Query 042574
Match_columns 929
No_of_seqs 593 out of 5454
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 07:30:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042574.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042574hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6.2E-90 1.3E-94 811.4 45.1 822 11-920 9-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.6E-61 5.7E-66 602.6 51.3 666 139-880 184-911 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.9E-42 4.1E-47 372.2 16.9 276 147-425 2-284 (287)
4 PLN00113 leucine-rich repeat r 99.8 2E-20 4.4E-25 235.5 19.1 361 496-883 92-496 (968)
5 KOG0444 Cytoskeletal regulator 99.8 4.9E-23 1.1E-27 219.3 -6.3 341 478-879 36-379 (1255)
6 PLN00113 leucine-rich repeat r 99.8 8.1E-20 1.8E-24 230.1 20.0 176 495-673 186-364 (968)
7 PLN03210 Resistant to P. syrin 99.8 2.1E-18 4.5E-23 217.1 20.4 338 496-879 588-947 (1153)
8 KOG4194 Membrane glycoprotein 99.8 5.2E-20 1.1E-24 195.5 3.3 366 497-908 78-462 (873)
9 KOG0444 Cytoskeletal regulator 99.7 1.5E-20 3.3E-25 200.5 -8.9 359 488-912 23-391 (1255)
10 KOG4194 Membrane glycoprotein 99.7 8.2E-18 1.8E-22 179.1 11.3 353 496-892 51-425 (873)
11 KOG0472 Leucine-rich repeat pr 99.6 8E-18 1.7E-22 171.6 -4.8 370 485-880 148-544 (565)
12 KOG0618 Serine/threonine phosp 99.5 5.2E-16 1.1E-20 174.5 -2.9 111 759-875 373-489 (1081)
13 PRK15387 E3 ubiquitin-protein 99.5 4.5E-13 9.7E-18 156.5 16.4 144 482-649 209-352 (788)
14 KOG4658 Apoptotic ATPase [Sign 99.5 4.5E-14 9.8E-19 168.6 6.8 325 484-881 533-866 (889)
15 KOG0472 Leucine-rich repeat pr 99.5 1.9E-16 4E-21 161.8 -11.7 187 485-678 79-265 (565)
16 KOG0617 Ras suppressor protein 99.4 1.6E-15 3.4E-20 137.1 -5.2 149 497-649 33-183 (264)
17 PRK04841 transcriptional regul 99.4 1.2E-11 2.5E-16 155.5 24.4 289 139-472 14-332 (903)
18 PRK15387 E3 ubiquitin-protein 99.4 2E-12 4.2E-17 151.2 14.1 254 499-873 203-456 (788)
19 KOG0617 Ras suppressor protein 99.4 1.1E-14 2.4E-19 131.7 -3.7 150 484-638 43-195 (264)
20 PRK15370 E3 ubiquitin-protein 99.4 1.4E-12 3E-17 153.5 11.1 134 499-649 180-314 (754)
21 PRK15370 E3 ubiquitin-protein 99.3 1.1E-11 2.3E-16 146.1 12.7 149 482-649 186-335 (754)
22 KOG0618 Serine/threonine phosp 99.2 8E-13 1.7E-17 149.3 -0.4 144 502-649 3-147 (1081)
23 KOG4237 Extracellular matrix p 99.2 7.5E-13 1.6E-17 135.7 -2.7 125 524-649 70-198 (498)
24 COG2909 MalT ATP-dependent tra 99.2 2.4E-09 5.2E-14 121.5 23.0 286 151-474 25-340 (894)
25 TIGR03015 pepcterm_ATPase puta 99.2 3.6E-09 7.7E-14 112.5 23.1 182 160-346 41-242 (269)
26 PRK00411 cdc6 cell division co 99.1 1E-08 2.3E-13 115.4 25.1 290 139-452 30-358 (394)
27 TIGR02928 orc1/cdc6 family rep 99.1 2.9E-08 6.3E-13 110.6 26.4 294 139-452 15-350 (365)
28 TIGR00635 ruvB Holliday juncti 99.1 3.3E-09 7.1E-14 114.8 16.9 274 139-455 4-292 (305)
29 PF01637 Arch_ATPase: Archaeal 99.1 3.3E-10 7.2E-15 117.8 8.7 193 141-341 1-233 (234)
30 PRK00080 ruvB Holliday junctio 99.0 1.9E-09 4.1E-14 117.3 14.2 274 139-455 25-313 (328)
31 KOG4237 Extracellular matrix p 99.0 5.5E-11 1.2E-15 122.3 1.6 199 477-680 49-337 (498)
32 PF05729 NACHT: NACHT domain 99.0 1.4E-09 3.1E-14 106.2 11.1 142 163-310 1-163 (166)
33 COG3899 Predicted ATPase [Gene 98.9 1.6E-08 3.5E-13 122.0 16.6 310 140-474 1-388 (849)
34 KOG0532 Leucine-rich repeat (L 98.9 1.7E-10 3.8E-15 124.0 -2.8 160 485-650 86-245 (722)
35 cd00116 LRR_RI Leucine-rich re 98.8 2.2E-09 4.9E-14 117.4 2.9 62 519-581 21-93 (319)
36 COG2256 MGS1 ATPase related to 98.8 3.2E-08 7E-13 103.4 10.4 172 139-338 24-208 (436)
37 PF14580 LRR_9: Leucine-rich r 98.8 7.3E-09 1.6E-13 99.5 5.1 77 499-579 21-98 (175)
38 PRK06893 DNA replication initi 98.7 7.2E-08 1.6E-12 98.8 11.5 172 139-342 16-203 (229)
39 KOG1259 Nischarin, modulator o 98.7 2.6E-09 5.7E-14 105.8 -0.8 131 497-632 284-416 (490)
40 PF14580 LRR_9: Leucine-rich r 98.7 1.9E-08 4.1E-13 96.6 5.1 123 519-645 17-146 (175)
41 PRK13342 recombination factor 98.6 4E-07 8.7E-12 102.2 13.2 176 139-344 12-198 (413)
42 KOG3207 Beta-tubulin folding c 98.6 8.6E-09 1.9E-13 108.0 -0.5 137 494-630 118-261 (505)
43 PTZ00112 origin recognition co 98.6 4.8E-06 1E-10 96.0 20.9 206 139-346 755-986 (1164)
44 KOG4341 F-box protein containi 98.5 3E-09 6.6E-14 110.7 -4.8 277 546-899 138-431 (483)
45 KOG3207 Beta-tubulin folding c 98.5 1.3E-08 2.8E-13 106.6 -0.7 179 495-674 144-335 (505)
46 COG4886 Leucine-rich repeat (L 98.5 8.5E-08 1.8E-12 108.1 5.2 160 485-649 127-287 (394)
47 cd00116 LRR_RI Leucine-rich re 98.5 3.8E-08 8.3E-13 107.6 2.2 180 497-678 81-291 (319)
48 TIGR03420 DnaA_homol_Hda DnaA 98.5 4.8E-07 1E-11 93.3 10.2 173 139-343 15-202 (226)
49 KOG0532 Leucine-rich repeat (L 98.5 2E-08 4.3E-13 108.5 -0.5 142 487-633 111-252 (722)
50 PF13401 AAA_22: AAA domain; P 98.5 5.5E-07 1.2E-11 83.9 8.4 117 162-280 4-125 (131)
51 PRK07003 DNA polymerase III su 98.4 7.3E-06 1.6E-10 94.2 17.9 177 139-342 16-221 (830)
52 KOG1259 Nischarin, modulator o 98.4 3.7E-08 7.9E-13 97.9 -1.0 117 545-664 283-399 (490)
53 PF13173 AAA_14: AAA domain 98.4 4.9E-07 1.1E-11 83.5 6.6 119 162-302 2-127 (128)
54 cd01128 rho_factor Transcripti 98.4 6.1E-07 1.3E-11 92.0 7.6 92 161-254 15-114 (249)
55 COG1474 CDC6 Cdc6-related prot 98.4 2.4E-05 5.2E-10 85.2 20.2 199 139-342 17-238 (366)
56 PRK12402 replication factor C 98.4 4.4E-06 9.6E-11 92.0 14.6 195 139-340 15-224 (337)
57 cd00009 AAA The AAA+ (ATPases 98.3 2.5E-06 5.4E-11 81.3 10.1 120 147-282 4-131 (151)
58 KOG2028 ATPase related to the 98.3 3.7E-06 7.9E-11 86.3 11.5 174 139-336 138-330 (554)
59 PF05496 RuvB_N: Holliday junc 98.3 8.1E-06 1.8E-10 80.2 13.4 174 139-347 24-226 (233)
60 PRK12323 DNA polymerase III su 98.3 5.1E-06 1.1E-10 94.2 13.1 176 139-341 16-224 (700)
61 TIGR02903 spore_lon_C ATP-depe 98.3 4.4E-05 9.5E-10 89.6 21.0 198 139-344 154-397 (615)
62 PLN03025 replication factor C 98.3 8.3E-06 1.8E-10 88.4 14.0 178 139-338 13-196 (319)
63 PRK09376 rho transcription ter 98.3 2.7E-06 5.8E-11 90.7 9.7 92 161-254 168-267 (416)
64 PRK14961 DNA polymerase III su 98.3 1.6E-05 3.5E-10 87.6 16.0 188 139-339 16-217 (363)
65 PRK04195 replication factor C 98.3 3.6E-05 7.8E-10 88.4 19.2 176 139-343 14-203 (482)
66 PRK14956 DNA polymerase III su 98.3 2.9E-06 6.2E-11 93.8 9.7 186 139-337 18-217 (484)
67 COG4886 Leucine-rich repeat (L 98.3 6.2E-07 1.3E-11 101.1 4.6 169 497-674 116-286 (394)
68 KOG4341 F-box protein containi 98.3 4.1E-08 8.9E-13 102.4 -4.7 85 518-602 161-252 (483)
69 PRK05564 DNA polymerase III su 98.2 1.9E-05 4E-10 85.5 15.3 176 139-341 4-189 (313)
70 PRK06645 DNA polymerase III su 98.2 1.4E-05 3.1E-10 90.4 14.8 174 139-339 21-226 (507)
71 PRK14963 DNA polymerase III su 98.2 1.9E-05 4.1E-10 89.9 15.6 184 139-339 14-214 (504)
72 PRK14949 DNA polymerase III su 98.2 1.3E-05 2.7E-10 94.2 14.3 179 139-340 16-218 (944)
73 PRK08084 DNA replication initi 98.2 1.5E-05 3.3E-10 82.0 13.6 170 139-341 23-208 (235)
74 PRK08727 hypothetical protein; 98.2 1.1E-05 2.4E-10 82.9 12.3 168 139-339 19-201 (233)
75 PRK00440 rfc replication facto 98.2 2E-05 4.4E-10 86.0 15.1 177 139-339 17-200 (319)
76 PRK14960 DNA polymerase III su 98.2 1.2E-05 2.6E-10 91.5 13.2 175 139-340 15-217 (702)
77 PF13855 LRR_8: Leucine rich r 98.2 1.1E-06 2.3E-11 69.2 3.5 57 522-579 2-59 (61)
78 PF13855 LRR_8: Leucine rich r 98.2 1.2E-06 2.5E-11 69.0 3.5 58 592-649 1-59 (61)
79 PRK14962 DNA polymerase III su 98.2 2.6E-05 5.7E-10 88.0 14.7 184 139-345 14-222 (472)
80 PRK09087 hypothetical protein; 98.2 1.2E-05 2.7E-10 81.8 11.0 141 161-342 43-195 (226)
81 PRK09112 DNA polymerase III su 98.2 4.6E-05 9.9E-10 82.7 16.0 195 139-343 23-241 (351)
82 PF00308 Bac_DnaA: Bacterial d 98.1 2.6E-05 5.6E-10 79.1 12.9 158 162-340 34-206 (219)
83 PF14516 AAA_35: AAA-like doma 98.1 0.00076 1.7E-08 73.3 25.1 199 138-349 10-246 (331)
84 PF13191 AAA_16: AAA ATPase do 98.1 9.7E-06 2.1E-10 80.6 9.4 48 140-189 1-51 (185)
85 PLN03150 hypothetical protein; 98.1 5.2E-06 1.1E-10 98.2 8.3 102 548-649 420-525 (623)
86 PRK14957 DNA polymerase III su 98.1 4.5E-05 9.7E-10 86.9 15.3 181 139-342 16-221 (546)
87 PRK07471 DNA polymerase III su 98.1 5.4E-05 1.2E-09 82.7 15.2 196 139-343 19-239 (365)
88 PLN03150 hypothetical protein; 98.1 5.4E-06 1.2E-10 98.0 7.6 103 523-626 420-526 (623)
89 PTZ00202 tuzin; Provisional 98.1 4.8E-05 1E-09 81.6 13.6 164 133-310 256-434 (550)
90 TIGR00678 holB DNA polymerase 98.1 4.8E-05 1E-09 75.7 13.1 158 152-337 3-186 (188)
91 COG3903 Predicted ATPase [Gene 98.1 3.2E-06 7E-11 89.4 4.7 294 162-474 14-316 (414)
92 TIGR00767 rho transcription te 98.1 1.1E-05 2.4E-10 86.7 8.7 92 161-254 167-266 (415)
93 PRK07940 DNA polymerase III su 98.1 7.6E-05 1.7E-09 82.2 15.4 171 139-342 5-213 (394)
94 PRK14087 dnaA chromosomal repl 98.0 5.5E-05 1.2E-09 85.3 14.2 187 140-343 117-320 (450)
95 TIGR02397 dnaX_nterm DNA polym 98.0 9.2E-05 2E-09 82.2 15.7 180 139-342 14-218 (355)
96 PRK13341 recombination factor 98.0 3.5E-05 7.6E-10 91.1 12.8 168 139-336 28-211 (725)
97 PRK07994 DNA polymerase III su 98.0 7.3E-05 1.6E-09 86.6 14.7 190 139-341 16-219 (647)
98 PRK08691 DNA polymerase III su 98.0 7.5E-05 1.6E-09 86.0 14.4 175 139-340 16-218 (709)
99 PRK14964 DNA polymerase III su 98.0 0.0001 2.2E-09 82.8 15.2 178 139-339 13-214 (491)
100 KOG3665 ZYG-1-like serine/thre 98.0 2.3E-06 5.1E-11 100.5 2.4 131 497-628 122-263 (699)
101 PRK08903 DnaA regulatory inact 98.0 5E-05 1.1E-09 78.2 11.8 171 139-346 18-203 (227)
102 PRK15386 type III secretion pr 98.0 1.1E-05 2.4E-10 87.1 6.7 21 862-883 156-176 (426)
103 KOG2120 SCF ubiquitin ligase, 98.0 3.9E-07 8.5E-12 90.9 -4.0 60 771-846 314-373 (419)
104 PRK05896 DNA polymerase III su 98.0 6.8E-05 1.5E-09 85.5 12.9 191 139-342 16-221 (605)
105 PRK05642 DNA replication initi 98.0 7.4E-05 1.6E-09 76.8 12.2 148 162-341 45-207 (234)
106 PRK14951 DNA polymerase III su 98.0 0.0001 2.2E-09 85.3 14.4 193 139-340 16-223 (618)
107 PRK14955 DNA polymerase III su 98.0 9.2E-05 2E-09 82.7 13.7 196 139-340 16-226 (397)
108 PRK14970 DNA polymerase III su 97.9 0.0002 4.3E-09 79.6 15.6 177 139-338 17-205 (367)
109 TIGR01242 26Sp45 26S proteasom 97.9 8.6E-05 1.9E-09 82.2 12.3 170 139-336 122-328 (364)
110 PF05621 TniB: Bacterial TniB 97.9 0.0002 4.3E-09 74.1 13.6 192 148-342 44-261 (302)
111 PRK14969 DNA polymerase III su 97.9 0.00021 4.5E-09 82.3 15.4 172 139-337 16-215 (527)
112 PRK14958 DNA polymerase III su 97.9 0.00017 3.7E-09 82.4 14.3 178 139-339 16-217 (509)
113 KOG1859 Leucine-rich repeat pr 97.8 7.1E-07 1.5E-11 99.2 -5.3 121 547-672 165-286 (1096)
114 TIGR00362 DnaA chromosomal rep 97.8 0.00029 6.2E-09 79.3 15.3 178 141-339 113-307 (405)
115 PRK07764 DNA polymerase III su 97.8 0.00026 5.7E-09 85.0 15.5 173 139-339 15-218 (824)
116 TIGR02639 ClpA ATP-dependent C 97.8 0.00014 2.9E-09 88.0 13.2 154 139-310 182-358 (731)
117 PRK14088 dnaA chromosomal repl 97.8 0.00027 5.8E-09 79.8 14.7 180 140-339 107-302 (440)
118 PRK14971 DNA polymerase III su 97.8 0.00029 6.3E-09 82.3 15.3 177 139-339 17-219 (614)
119 PRK14959 DNA polymerase III su 97.8 0.0002 4.2E-09 82.3 13.2 195 139-346 16-225 (624)
120 PRK08451 DNA polymerase III su 97.8 0.00037 8E-09 79.1 15.2 181 139-342 14-218 (535)
121 PRK07133 DNA polymerase III su 97.8 0.00026 5.7E-09 82.5 14.3 185 139-341 18-219 (725)
122 PRK15386 type III secretion pr 97.8 7.7E-05 1.7E-09 80.8 8.9 61 497-564 52-113 (426)
123 TIGR02881 spore_V_K stage V sp 97.8 0.00015 3.2E-09 76.3 10.9 132 162-312 42-193 (261)
124 PRK06305 DNA polymerase III su 97.8 0.00033 7.1E-09 79.1 14.1 180 139-342 17-223 (451)
125 PRK14952 DNA polymerase III su 97.8 0.00048 1E-08 79.5 15.5 179 139-344 13-222 (584)
126 PRK00149 dnaA chromosomal repl 97.7 0.00044 9.5E-09 78.9 14.8 179 140-339 124-319 (450)
127 PRK11331 5-methylcytosine-spec 97.7 0.00018 4E-09 78.8 11.0 69 139-212 175-243 (459)
128 KOG0989 Replication factor C, 97.7 0.00017 3.8E-09 73.2 9.8 184 139-341 36-230 (346)
129 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00042 9E-09 84.4 15.1 178 139-335 187-389 (852)
130 PRK14954 DNA polymerase III su 97.7 0.00054 1.2E-08 79.6 15.3 193 139-337 16-223 (620)
131 PRK14953 DNA polymerase III su 97.7 0.00054 1.2E-08 77.9 15.0 177 139-342 16-220 (486)
132 KOG2120 SCF ubiquitin ligase, 97.7 2.1E-06 4.7E-11 85.7 -3.7 62 543-604 207-272 (419)
133 PRK09111 DNA polymerase III su 97.7 0.00064 1.4E-08 78.9 15.7 194 139-341 24-232 (598)
134 PF12799 LRR_4: Leucine Rich r 97.7 3.1E-05 6.8E-10 55.6 3.1 40 592-631 1-40 (44)
135 PRK06620 hypothetical protein; 97.7 0.00017 3.7E-09 72.8 9.7 155 139-338 17-185 (214)
136 PRK14950 DNA polymerase III su 97.7 0.0005 1.1E-08 80.6 14.7 192 139-342 16-221 (585)
137 KOG2227 Pre-initiation complex 97.7 0.0033 7.1E-08 67.8 18.7 199 137-342 148-368 (529)
138 COG2255 RuvB Holliday junction 97.7 0.0053 1.2E-07 62.0 18.8 171 139-344 26-225 (332)
139 TIGR02880 cbbX_cfxQ probable R 97.6 0.00025 5.5E-09 75.1 10.4 130 164-312 60-210 (284)
140 CHL00095 clpC Clp protease ATP 97.6 0.00027 5.9E-09 86.4 12.1 155 139-309 179-353 (821)
141 PRK06647 DNA polymerase III su 97.6 0.00078 1.7E-08 77.9 15.0 190 139-341 16-219 (563)
142 CHL00181 cbbX CbbX; Provisiona 97.6 0.00056 1.2E-08 72.4 12.2 132 163-313 60-212 (287)
143 PHA02544 44 clamp loader, smal 97.6 0.0004 8.8E-09 75.5 11.5 144 139-308 21-171 (316)
144 PRK03992 proteasome-activating 97.6 0.00073 1.6E-08 75.1 13.4 169 139-335 131-336 (389)
145 PRK14086 dnaA chromosomal repl 97.6 0.004 8.7E-08 71.4 19.3 156 163-339 315-485 (617)
146 KOG2543 Origin recognition com 97.6 0.00048 1E-08 72.1 10.4 163 139-309 6-192 (438)
147 PF12799 LRR_4: Leucine Rich r 97.5 7.8E-05 1.7E-09 53.5 3.3 33 547-579 2-34 (44)
148 KOG1859 Leucine-rich repeat pr 97.5 1.8E-06 4E-11 96.0 -7.6 126 498-629 165-293 (1096)
149 PRK07399 DNA polymerase III su 97.5 0.0012 2.5E-08 70.8 13.4 196 139-342 4-221 (314)
150 KOG2982 Uncharacterized conser 97.5 4E-05 8.7E-10 76.9 2.0 84 544-627 69-158 (418)
151 smart00382 AAA ATPases associa 97.5 0.00033 7.3E-09 65.9 8.2 90 163-257 3-92 (148)
152 PRK05563 DNA polymerase III su 97.5 0.0028 6.1E-08 73.7 16.8 188 139-339 16-217 (559)
153 KOG0531 Protein phosphatase 1, 97.5 2.4E-05 5.1E-10 88.4 -0.2 107 543-652 92-199 (414)
154 COG3267 ExeA Type II secretory 97.5 0.0049 1.1E-07 61.5 15.8 191 148-344 38-247 (269)
155 PRK11034 clpA ATP-dependent Cl 97.5 0.00098 2.1E-08 79.6 12.9 154 139-310 186-362 (758)
156 PRK08118 topology modulation p 97.5 6.7E-05 1.5E-09 72.6 2.7 36 163-198 2-37 (167)
157 KOG0531 Protein phosphatase 1, 97.5 2E-05 4.4E-10 89.0 -1.2 147 495-650 93-243 (414)
158 PRK12422 chromosomal replicati 97.4 0.0017 3.7E-08 73.0 14.1 150 163-335 142-306 (445)
159 PRK14948 DNA polymerase III su 97.4 0.0028 6.1E-08 74.3 16.3 193 139-342 16-222 (620)
160 TIGR00602 rad24 checkpoint pro 97.4 0.00054 1.2E-08 79.5 10.3 46 139-186 84-134 (637)
161 PTZ00361 26 proteosome regulat 97.4 0.0011 2.4E-08 73.8 11.7 129 162-312 217-369 (438)
162 PRK08181 transposase; Validate 97.4 0.0042 9.2E-08 64.7 15.0 78 155-254 101-178 (269)
163 PRK14965 DNA polymerase III su 97.4 0.0028 6.1E-08 74.0 15.1 191 139-342 16-221 (576)
164 PF00004 AAA: ATPase family as 97.4 0.00043 9.3E-09 64.3 6.8 68 165-254 1-69 (132)
165 PRK10865 protein disaggregatio 97.3 0.0017 3.6E-08 79.5 13.2 153 139-310 178-354 (857)
166 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0019 4.1E-08 79.4 13.7 152 139-310 173-349 (852)
167 COG1223 Predicted ATPase (AAA+ 97.3 0.0012 2.6E-08 65.2 9.1 172 139-336 121-319 (368)
168 KOG3665 ZYG-1-like serine/thre 97.3 0.00013 2.8E-09 86.1 3.0 128 521-649 122-260 (699)
169 KOG0741 AAA+-type ATPase [Post 97.3 0.004 8.8E-08 67.8 13.8 155 162-346 538-716 (744)
170 PRK10787 DNA-binding ATP-depen 97.3 0.0042 9.2E-08 74.8 15.7 46 139-186 322-373 (784)
171 PTZ00454 26S protease regulato 97.3 0.0029 6.2E-08 70.1 13.0 149 162-336 179-351 (398)
172 COG1373 Predicted ATPase (AAA+ 97.3 0.0026 5.5E-08 70.8 12.5 132 148-306 24-163 (398)
173 KOG1644 U2-associated snRNP A' 97.2 0.00069 1.5E-08 64.7 6.6 100 522-624 43-149 (233)
174 PRK12608 transcription termina 97.2 0.0026 5.7E-08 68.3 11.6 102 151-254 121-231 (380)
175 COG0466 Lon ATP-dependent Lon 97.2 0.016 3.5E-07 66.1 18.1 153 140-310 324-508 (782)
176 CHL00176 ftsH cell division pr 97.2 0.0049 1.1E-07 72.3 14.6 171 139-335 183-387 (638)
177 PF04665 Pox_A32: Poxvirus A32 97.2 0.0011 2.3E-08 67.1 7.9 36 163-201 14-49 (241)
178 PF05673 DUF815: Protein of un 97.2 0.022 4.9E-07 57.2 16.9 49 137-187 25-77 (249)
179 TIGR00763 lon ATP-dependent pr 97.2 0.017 3.7E-07 70.4 19.6 46 139-186 320-371 (775)
180 PRK08116 hypothetical protein; 97.2 0.00073 1.6E-08 70.8 6.5 101 163-280 115-220 (268)
181 KOG1644 U2-associated snRNP A' 97.1 0.00073 1.6E-08 64.5 5.7 104 545-649 41-150 (233)
182 KOG4579 Leucine-rich repeat (L 97.1 6.4E-05 1.4E-09 66.8 -1.4 81 498-580 54-134 (177)
183 PRK05707 DNA polymerase III su 97.1 0.0045 9.8E-08 66.7 12.3 155 162-342 22-203 (328)
184 KOG2982 Uncharacterized conser 97.1 0.00024 5.2E-09 71.5 2.3 103 547-649 46-156 (418)
185 KOG4579 Leucine-rich repeat (L 97.1 6.9E-05 1.5E-09 66.6 -1.4 91 519-610 51-141 (177)
186 TIGR01241 FtsH_fam ATP-depende 97.1 0.01 2.2E-07 68.6 15.9 171 139-335 55-259 (495)
187 KOG1909 Ran GTPase-activating 97.1 0.00015 3.2E-09 74.9 0.4 179 497-677 92-310 (382)
188 COG0593 DnaA ATPase involved i 97.1 0.0078 1.7E-07 65.6 13.5 157 139-314 88-261 (408)
189 TIGR03689 pup_AAA proteasome A 97.1 0.0027 5.8E-08 71.9 10.3 137 162-312 216-380 (512)
190 KOG1909 Ran GTPase-activating 97.0 0.00027 5.9E-09 73.0 1.8 133 496-628 156-311 (382)
191 PRK09183 transposase/IS protei 97.0 0.011 2.5E-07 61.6 13.8 25 162-186 102-126 (259)
192 PF00448 SRP54: SRP54-type pro 97.0 0.0054 1.2E-07 60.9 10.8 88 162-252 1-92 (196)
193 PRK07261 topology modulation p 97.0 0.0012 2.6E-08 64.2 6.0 35 164-198 2-36 (171)
194 PRK10536 hypothetical protein; 97.0 0.00088 1.9E-08 68.0 5.0 54 140-198 56-109 (262)
195 PRK08058 DNA polymerase III su 97.0 0.0073 1.6E-07 65.6 12.4 159 140-308 6-180 (329)
196 PRK08769 DNA polymerase III su 97.0 0.019 4.1E-07 61.4 15.0 181 147-343 10-209 (319)
197 TIGR02237 recomb_radB DNA repa 96.9 0.005 1.1E-07 62.4 9.6 47 162-212 12-58 (209)
198 KOG0734 AAA+-type ATPase conta 96.9 0.0031 6.7E-08 68.8 7.9 93 140-254 305-407 (752)
199 KOG0991 Replication factor C, 96.8 0.0033 7.2E-08 61.2 7.2 68 139-209 27-94 (333)
200 COG1222 RPT1 ATP-dependent 26S 96.8 0.012 2.6E-07 61.6 11.6 160 161-346 184-371 (406)
201 PF13207 AAA_17: AAA domain; P 96.8 0.001 2.2E-08 60.7 3.6 23 164-186 1-23 (121)
202 cd00544 CobU Adenosylcobinamid 96.8 0.0015 3.1E-08 63.1 4.3 149 164-337 1-167 (169)
203 TIGR02640 gas_vesic_GvpN gas v 96.7 0.037 8E-07 58.1 14.9 56 147-210 8-63 (262)
204 PRK12727 flagellar biosynthesi 96.7 0.064 1.4E-06 60.4 17.2 87 162-252 350-437 (559)
205 KOG0733 Nuclear AAA ATPase (VC 96.7 0.021 4.6E-07 63.6 12.9 71 162-254 223-293 (802)
206 KOG0731 AAA+-type ATPase conta 96.7 0.017 3.8E-07 67.2 12.7 177 139-340 311-522 (774)
207 PRK10865 protein disaggregatio 96.7 0.069 1.5E-06 65.7 18.7 46 139-186 568-622 (857)
208 COG0542 clpA ATP-binding subun 96.6 0.032 6.9E-07 65.6 14.6 104 139-254 491-604 (786)
209 KOG2004 Mitochondrial ATP-depe 96.6 0.028 6.1E-07 63.9 13.5 63 140-210 412-480 (906)
210 PRK06871 DNA polymerase III su 96.6 0.067 1.5E-06 57.3 15.9 175 148-339 9-200 (325)
211 COG1875 NYN ribonuclease and A 96.6 0.0055 1.2E-07 64.0 7.3 51 147-197 230-280 (436)
212 cd01120 RecA-like_NTPases RecA 96.5 0.013 2.8E-07 56.5 9.5 40 164-206 1-40 (165)
213 PRK12377 putative replication 96.5 0.0042 9.1E-08 63.8 6.1 73 162-253 101-173 (248)
214 KOG1969 DNA replication checkp 96.5 0.0068 1.5E-07 68.9 7.9 74 162-255 326-399 (877)
215 CHL00195 ycf46 Ycf46; Provisio 96.5 0.014 3E-07 66.3 10.6 151 162-336 259-429 (489)
216 PF13306 LRR_5: Leucine rich r 96.5 0.0051 1.1E-07 56.7 6.1 121 513-641 4-128 (129)
217 PRK06526 transposase; Provisio 96.5 0.0018 3.9E-08 67.1 3.1 26 162-187 98-123 (254)
218 PRK00771 signal recognition pa 96.5 0.035 7.6E-07 62.0 13.3 87 161-252 94-184 (437)
219 TIGR01425 SRP54_euk signal rec 96.5 0.075 1.6E-06 58.9 15.6 38 161-201 99-136 (429)
220 KOG1514 Origin recognition com 96.5 0.05 1.1E-06 62.0 14.2 165 140-312 397-591 (767)
221 cd01393 recA_like RecA is a b 96.5 0.016 3.5E-07 59.5 10.0 50 162-211 19-71 (226)
222 PF10443 RNA12: RNA12 protein; 96.4 0.13 2.9E-06 56.0 16.9 195 147-352 2-288 (431)
223 PF13177 DNA_pol3_delta2: DNA 96.4 0.014 2.9E-07 56.2 8.7 40 147-186 3-43 (162)
224 PRK09361 radB DNA repair and r 96.4 0.014 3.1E-07 59.8 9.4 45 162-210 23-67 (225)
225 PRK08939 primosomal protein Dn 96.4 0.28 6.1E-06 52.4 19.3 99 161-279 155-259 (306)
226 PRK07993 DNA polymerase III su 96.4 0.077 1.7E-06 57.5 15.1 177 148-340 9-202 (334)
227 cd01123 Rad51_DMC1_radA Rad51_ 96.4 0.013 2.9E-07 60.5 9.1 91 162-253 19-125 (235)
228 PRK04296 thymidine kinase; Pro 96.4 0.0031 6.6E-08 62.6 4.0 112 163-283 3-118 (190)
229 TIGR03345 VI_ClpV1 type VI sec 96.4 0.006 1.3E-07 74.5 7.2 46 139-186 566-620 (852)
230 COG1618 Predicted nucleotide k 96.4 0.0047 1E-07 57.0 4.6 25 163-187 6-30 (179)
231 KOG2739 Leucine-rich acidic nu 96.4 0.0011 2.4E-08 66.2 0.6 81 547-628 44-129 (260)
232 TIGR02902 spore_lonB ATP-depen 96.3 0.015 3.2E-07 67.5 9.8 46 139-186 65-110 (531)
233 cd01133 F1-ATPase_beta F1 ATP 96.3 0.026 5.6E-07 58.4 10.4 92 161-254 68-174 (274)
234 PRK10867 signal recognition pa 96.3 0.11 2.3E-06 58.1 15.8 57 161-220 99-157 (433)
235 TIGR02012 tigrfam_recA protein 96.3 0.012 2.6E-07 62.6 8.1 85 162-254 55-144 (321)
236 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.011 2.3E-07 56.0 6.8 116 163-281 3-138 (159)
237 PRK14722 flhF flagellar biosyn 96.3 0.017 3.7E-07 62.8 9.3 88 162-253 137-225 (374)
238 KOG1947 Leucine rich repeat pr 96.3 0.00066 1.4E-08 78.9 -1.6 43 835-877 400-442 (482)
239 COG0541 Ffh Signal recognition 96.3 0.24 5.1E-06 53.9 17.5 72 149-223 78-159 (451)
240 TIGR03346 chaperone_ClpB ATP-d 96.3 0.0079 1.7E-07 74.0 7.5 46 139-186 565-619 (852)
241 COG1484 DnaC DNA replication p 96.3 0.022 4.7E-07 59.2 9.6 82 152-254 97-178 (254)
242 TIGR02238 recomb_DMC1 meiotic 96.2 0.021 4.6E-07 61.1 9.6 91 162-253 96-201 (313)
243 PRK06696 uridine kinase; Valid 96.2 0.0069 1.5E-07 62.0 5.7 40 147-186 4-46 (223)
244 TIGR02639 ClpA ATP-dependent C 96.2 0.01 2.2E-07 72.0 7.9 102 139-254 454-564 (731)
245 TIGR03499 FlhF flagellar biosy 96.2 0.027 5.8E-07 59.7 10.1 86 162-251 194-280 (282)
246 KOG2228 Origin recognition com 96.2 0.02 4.4E-07 59.3 8.6 169 139-312 24-221 (408)
247 CHL00095 clpC Clp protease ATP 96.2 0.0085 1.8E-07 73.6 7.1 46 139-186 509-563 (821)
248 PRK06090 DNA polymerase III su 96.2 0.11 2.4E-06 55.5 14.6 176 148-342 10-201 (319)
249 smart00763 AAA_PrkA PrkA AAA d 96.2 0.011 2.3E-07 63.5 6.7 58 139-198 51-118 (361)
250 PRK06921 hypothetical protein; 96.1 0.022 4.8E-07 59.6 8.9 39 161-201 116-154 (266)
251 PRK07952 DNA replication prote 96.1 0.04 8.6E-07 56.6 10.5 88 149-254 84-173 (244)
252 PRK11889 flhF flagellar biosyn 96.1 0.024 5.3E-07 61.2 9.1 86 162-252 241-329 (436)
253 TIGR01243 CDC48 AAA family ATP 96.1 0.032 6.8E-07 68.0 11.5 150 162-337 212-382 (733)
254 PRK09354 recA recombinase A; P 96.1 0.018 3.9E-07 61.8 8.2 85 162-254 60-149 (349)
255 cd00983 recA RecA is a bacter 96.1 0.013 2.7E-07 62.5 6.9 84 162-253 55-143 (325)
256 PRK06835 DNA replication prote 96.1 0.0066 1.4E-07 65.3 4.8 36 163-201 184-219 (329)
257 KOG0730 AAA+-type ATPase [Post 96.1 0.16 3.4E-06 57.8 15.4 133 161-315 467-620 (693)
258 PRK11034 clpA ATP-dependent Cl 96.1 0.011 2.4E-07 70.7 7.0 46 139-186 458-512 (758)
259 PLN00020 ribulose bisphosphate 96.0 0.017 3.7E-07 61.5 7.4 26 161-186 147-172 (413)
260 PRK06547 hypothetical protein; 96.0 0.0091 2E-07 57.9 5.1 34 153-186 6-39 (172)
261 COG1102 Cmk Cytidylate kinase 96.0 0.028 6E-07 52.0 7.7 45 164-222 2-46 (179)
262 PHA00729 NTP-binding motif con 96.0 0.0094 2E-07 59.7 5.1 36 151-186 6-41 (226)
263 cd03115 SRP The signal recogni 96.0 0.035 7.7E-07 54.2 9.3 24 164-187 2-25 (173)
264 KOG2739 Leucine-rich acidic nu 96.0 0.0039 8.6E-08 62.4 2.4 83 544-626 63-154 (260)
265 COG2812 DnaX DNA polymerase II 96.0 0.029 6.4E-07 63.2 9.4 185 139-336 16-214 (515)
266 TIGR01243 CDC48 AAA family ATP 95.9 0.046 9.9E-07 66.6 11.8 149 162-336 487-657 (733)
267 COG0542 clpA ATP-binding subun 95.9 0.017 3.6E-07 67.9 7.5 154 139-309 170-345 (786)
268 PRK05800 cobU adenosylcobinami 95.9 0.0024 5.2E-08 61.8 0.5 24 163-186 2-25 (170)
269 PRK05541 adenylylsulfate kinas 95.9 0.022 4.7E-07 55.9 7.3 36 161-199 6-41 (176)
270 TIGR03877 thermo_KaiC_1 KaiC d 95.9 0.054 1.2E-06 56.0 10.4 48 161-213 20-67 (237)
271 PF01695 IstB_IS21: IstB-like 95.9 0.015 3.3E-07 56.8 5.9 73 162-254 47-119 (178)
272 PF07693 KAP_NTPase: KAP famil 95.8 0.13 2.8E-06 56.2 13.9 39 150-188 5-46 (325)
273 cd01394 radB RadB. The archaea 95.8 0.044 9.5E-07 55.9 9.5 42 162-206 19-60 (218)
274 PRK06964 DNA polymerase III su 95.8 0.2 4.2E-06 54.3 14.7 91 242-343 131-226 (342)
275 PRK04132 replication factor C 95.8 0.1 2.2E-06 62.8 13.7 151 170-341 574-730 (846)
276 PF01583 APS_kinase: Adenylyls 95.8 0.0084 1.8E-07 56.4 3.6 36 162-200 2-37 (156)
277 PLN03187 meiotic recombination 95.8 0.063 1.4E-06 58.0 10.7 59 162-221 126-187 (344)
278 PF00485 PRK: Phosphoribulokin 95.8 0.008 1.7E-07 60.0 3.6 24 164-187 1-24 (194)
279 TIGR00064 ftsY signal recognit 95.8 0.061 1.3E-06 56.5 10.3 55 161-219 71-127 (272)
280 KOG0743 AAA+-type ATPase [Post 95.8 0.51 1.1E-05 51.5 17.2 167 147-349 211-417 (457)
281 COG0470 HolB ATPase involved i 95.8 0.037 8.1E-07 60.4 9.2 41 147-187 7-49 (325)
282 PF03215 Rad17: Rad17 cell cyc 95.7 0.034 7.5E-07 63.6 8.9 49 147-200 25-78 (519)
283 PF13238 AAA_18: AAA domain; P 95.7 0.0086 1.9E-07 55.2 3.4 22 165-186 1-22 (129)
284 PRK12726 flagellar biosynthesi 95.7 0.055 1.2E-06 58.3 9.6 88 161-252 205-294 (407)
285 PRK14974 cell division protein 95.7 0.1 2.2E-06 56.2 11.8 90 161-254 139-233 (336)
286 KOG0733 Nuclear AAA ATPase (VC 95.7 0.089 1.9E-06 58.9 11.3 152 161-336 544-718 (802)
287 cd02019 NK Nucleoside/nucleoti 95.6 0.0098 2.1E-07 47.8 3.0 23 164-186 1-23 (69)
288 cd03247 ABCC_cytochrome_bd The 95.6 0.025 5.4E-07 55.6 6.5 25 162-186 28-52 (178)
289 PRK12724 flagellar biosynthesi 95.6 0.04 8.6E-07 60.4 8.4 83 162-251 223-307 (432)
290 PTZ00301 uridine kinase; Provi 95.6 0.015 3.3E-07 58.3 4.9 26 162-187 3-28 (210)
291 COG0563 Adk Adenylate kinase a 95.6 0.024 5.1E-07 55.3 6.1 23 164-186 2-24 (178)
292 KOG0728 26S proteasome regulat 95.6 0.17 3.7E-06 50.1 11.8 148 161-330 180-351 (404)
293 KOG2123 Uncharacterized conser 95.6 0.0014 3E-08 65.6 -2.5 77 521-602 19-98 (388)
294 TIGR00708 cobA cob(I)alamin ad 95.6 0.056 1.2E-06 51.8 8.4 117 162-281 5-140 (173)
295 COG0468 RecA RecA/RadA recombi 95.6 0.081 1.7E-06 55.1 10.2 48 162-212 60-107 (279)
296 TIGR02236 recomb_radA DNA repa 95.6 0.078 1.7E-06 57.3 10.7 57 162-219 95-154 (310)
297 TIGR02858 spore_III_AA stage I 95.6 0.014 3.1E-07 60.8 4.7 117 159-283 108-231 (270)
298 PLN03186 DNA repair protein RA 95.6 0.056 1.2E-06 58.5 9.4 58 162-220 123-183 (342)
299 PRK08533 flagellar accessory p 95.6 0.088 1.9E-06 54.0 10.4 48 162-214 24-71 (230)
300 PRK05480 uridine/cytidine kina 95.6 0.012 2.7E-07 59.5 4.1 27 160-186 4-30 (209)
301 KOG2123 Uncharacterized conser 95.6 0.00085 1.8E-08 67.0 -4.2 97 497-598 19-123 (388)
302 TIGR02239 recomb_RAD51 DNA rep 95.5 0.054 1.2E-06 58.2 9.0 58 162-220 96-156 (316)
303 PRK12723 flagellar biosynthesi 95.5 0.064 1.4E-06 59.0 9.7 90 161-253 173-264 (388)
304 PRK06067 flagellar accessory p 95.5 0.072 1.6E-06 55.0 9.7 47 162-213 25-71 (234)
305 KOG0735 AAA+-type ATPase [Post 95.5 0.028 6.1E-07 63.8 6.9 72 162-253 431-504 (952)
306 PRK06851 hypothetical protein; 95.5 0.25 5.4E-06 53.7 14.0 44 159-204 211-254 (367)
307 TIGR03878 thermo_KaiC_2 KaiC d 95.5 0.06 1.3E-06 56.3 9.1 40 162-204 36-75 (259)
308 PTZ00035 Rad51 protein; Provis 95.5 0.089 1.9E-06 57.1 10.6 58 162-220 118-178 (337)
309 TIGR00390 hslU ATP-dependent p 95.5 0.028 6E-07 61.3 6.5 25 162-186 47-71 (441)
310 COG0572 Udk Uridine kinase [Nu 95.5 0.014 3.1E-07 57.6 3.9 26 161-186 7-32 (218)
311 PF08423 Rad51: Rad51; InterP 95.5 0.12 2.7E-06 53.7 11.2 57 162-219 38-97 (256)
312 COG1419 FlhF Flagellar GTP-bin 95.5 0.13 2.8E-06 55.7 11.4 86 148-234 185-275 (407)
313 PRK08233 hypothetical protein; 95.4 0.011 2.4E-07 58.3 3.3 25 162-186 3-27 (182)
314 PRK15455 PrkA family serine pr 95.4 0.018 3.9E-07 64.9 5.1 46 139-186 76-127 (644)
315 cd02025 PanK Pantothenate kina 95.4 0.069 1.5E-06 54.2 8.9 23 164-186 1-23 (220)
316 PRK07667 uridine kinase; Provi 95.4 0.021 4.6E-07 56.8 5.1 36 152-187 5-42 (193)
317 COG1066 Sms Predicted ATP-depe 95.4 0.056 1.2E-06 57.9 8.3 86 162-254 93-179 (456)
318 cd03214 ABC_Iron-Siderophores_ 95.4 0.041 8.8E-07 54.2 7.0 116 162-283 25-160 (180)
319 PF00006 ATP-synt_ab: ATP synt 95.4 0.055 1.2E-06 54.3 7.9 87 162-253 15-115 (215)
320 PF07728 AAA_5: AAA domain (dy 95.4 0.038 8.2E-07 51.7 6.5 42 165-212 2-43 (139)
321 COG2884 FtsE Predicted ATPase 95.4 0.049 1.1E-06 51.9 6.9 123 162-291 28-207 (223)
322 COG3854 SpoIIIAA ncharacterize 95.4 0.027 5.8E-07 55.2 5.3 119 153-281 128-253 (308)
323 PRK06762 hypothetical protein; 95.4 0.015 3.2E-07 56.5 3.7 25 162-186 2-26 (166)
324 cd01121 Sms Sms (bacterial rad 95.4 0.058 1.2E-06 59.2 8.6 86 162-253 82-168 (372)
325 TIGR00235 udk uridine kinase. 95.3 0.016 3.5E-07 58.5 4.0 27 160-186 4-30 (207)
326 COG3640 CooC CO dehydrogenase 95.3 0.032 6.9E-07 55.1 5.8 43 164-208 2-44 (255)
327 PRK06217 hypothetical protein; 95.3 0.025 5.3E-07 55.9 5.2 23 164-186 3-25 (183)
328 TIGR00959 ffh signal recogniti 95.3 0.1 2.2E-06 58.2 10.5 91 161-253 98-192 (428)
329 COG4608 AppF ABC-type oligopep 95.3 0.068 1.5E-06 54.5 8.2 123 162-290 39-179 (268)
330 PRK08699 DNA polymerase III su 95.3 0.19 4.1E-06 54.3 12.2 25 162-186 21-45 (325)
331 PRK04328 hypothetical protein; 95.3 0.072 1.6E-06 55.4 8.8 41 161-204 22-62 (249)
332 PF13671 AAA_33: AAA domain; P 95.3 0.016 3.4E-07 54.6 3.5 23 164-186 1-23 (143)
333 COG1428 Deoxynucleoside kinase 95.3 0.033 7.2E-07 54.3 5.6 47 162-214 4-50 (216)
334 cd01135 V_A-ATPase_B V/A-type 95.2 0.12 2.7E-06 53.3 10.1 94 161-254 68-177 (276)
335 cd03223 ABCD_peroxisomal_ALDP 95.2 0.05 1.1E-06 52.7 6.9 115 162-284 27-151 (166)
336 PRK05703 flhF flagellar biosyn 95.2 0.061 1.3E-06 60.3 8.5 87 162-252 221-308 (424)
337 PRK12678 transcription termina 95.2 0.035 7.7E-07 62.4 6.4 93 161-254 415-514 (672)
338 PF13481 AAA_25: AAA domain; P 95.2 0.067 1.4E-06 53.4 8.0 42 163-204 33-81 (193)
339 PRK04301 radA DNA repair and r 95.2 0.12 2.6E-06 55.9 10.6 57 162-219 102-161 (317)
340 TIGR01360 aden_kin_iso1 adenyl 95.2 0.017 3.7E-07 57.4 3.7 26 161-186 2-27 (188)
341 PRK03839 putative kinase; Prov 95.1 0.018 3.9E-07 56.8 3.6 23 164-186 2-24 (180)
342 COG2607 Predicted ATPase (AAA+ 95.1 0.2 4.4E-06 49.7 10.5 50 138-187 59-110 (287)
343 PF03205 MobB: Molybdopterin g 95.1 0.041 8.9E-07 51.3 5.6 39 163-203 1-39 (140)
344 KOG0727 26S proteasome regulat 95.0 1.1 2.4E-05 44.6 15.3 27 160-186 187-213 (408)
345 cd01124 KaiC KaiC is a circadi 95.0 0.05 1.1E-06 53.9 6.5 38 164-204 1-38 (187)
346 KOG1947 Leucine rich repeat pr 95.0 0.0045 9.8E-08 71.9 -1.3 60 567-626 186-254 (482)
347 PF08433 KTI12: Chromatin asso 95.0 0.032 6.9E-07 58.3 5.1 25 163-187 2-26 (270)
348 TIGR00554 panK_bact pantothena 95.0 0.11 2.4E-06 54.7 9.2 27 160-186 60-86 (290)
349 PF06745 KaiC: KaiC; InterPro 95.0 0.035 7.5E-07 57.0 5.3 88 162-254 19-126 (226)
350 PRK06995 flhF flagellar biosyn 95.0 0.11 2.4E-06 58.6 9.5 60 162-222 256-316 (484)
351 cd02027 APSK Adenosine 5'-phos 94.9 0.11 2.4E-06 49.2 8.2 23 164-186 1-23 (149)
352 PRK05201 hslU ATP-dependent pr 94.9 0.046 1E-06 59.7 6.2 77 139-217 15-106 (443)
353 PRK14721 flhF flagellar biosyn 94.9 0.16 3.5E-06 56.3 10.5 61 162-223 191-252 (420)
354 PTZ00088 adenylate kinase 1; P 94.9 0.03 6.6E-07 57.0 4.6 23 164-186 8-30 (229)
355 PRK08972 fliI flagellum-specif 94.9 0.091 2E-06 58.1 8.5 88 162-254 162-263 (444)
356 PF07726 AAA_3: ATPase family 94.9 0.018 4E-07 51.6 2.5 22 165-186 2-23 (131)
357 PRK04040 adenylate kinase; Pro 94.9 0.023 5.1E-07 56.0 3.6 24 163-186 3-26 (188)
358 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.9 0.036 7.8E-07 52.2 4.7 25 162-186 26-50 (144)
359 PRK09270 nucleoside triphospha 94.9 0.043 9.4E-07 56.3 5.7 36 152-187 22-58 (229)
360 PF00910 RNA_helicase: RNA hel 94.9 0.021 4.5E-07 50.6 2.9 23 165-187 1-23 (107)
361 PRK06002 fliI flagellum-specif 94.8 0.081 1.8E-06 58.8 7.9 89 162-254 165-265 (450)
362 PRK14723 flhF flagellar biosyn 94.8 0.2 4.4E-06 59.4 11.6 87 162-253 185-273 (767)
363 COG1121 ZnuC ABC-type Mn/Zn tr 94.8 0.1 2.2E-06 53.1 8.0 25 162-186 30-54 (254)
364 PRK00625 shikimate kinase; Pro 94.8 0.024 5.2E-07 55.0 3.3 23 164-186 2-24 (173)
365 PRK10733 hflB ATP-dependent me 94.8 0.086 1.9E-06 62.7 8.7 128 163-312 186-337 (644)
366 PRK13531 regulatory ATPase Rav 94.8 0.05 1.1E-06 60.7 6.1 44 139-186 20-63 (498)
367 PRK12597 F0F1 ATP synthase sub 94.8 0.15 3.3E-06 57.1 9.9 92 161-254 142-248 (461)
368 PF00560 LRR_1: Leucine Rich R 94.7 0.014 2.9E-07 34.8 0.9 21 547-567 1-21 (22)
369 KOG0744 AAA+-type ATPase [Post 94.7 0.11 2.4E-06 53.6 7.9 28 162-189 177-204 (423)
370 cd03230 ABC_DR_subfamily_A Thi 94.7 0.077 1.7E-06 51.8 6.8 25 162-186 26-50 (173)
371 TIGR01359 UMP_CMP_kin_fam UMP- 94.7 0.022 4.7E-07 56.3 2.9 23 164-186 1-23 (183)
372 PF13306 LRR_5: Leucine rich r 94.7 0.083 1.8E-06 48.5 6.6 114 496-617 11-128 (129)
373 cd02024 NRK1 Nicotinamide ribo 94.7 0.023 5.1E-07 55.6 2.9 23 164-186 1-23 (187)
374 cd02023 UMPK Uridine monophosp 94.6 0.023 4.9E-07 57.0 2.8 23 164-186 1-23 (198)
375 cd03216 ABC_Carb_Monos_I This 94.6 0.059 1.3E-06 52.0 5.6 113 162-283 26-144 (163)
376 PF13245 AAA_19: Part of AAA d 94.6 0.087 1.9E-06 43.1 5.6 26 161-186 9-34 (76)
377 KOG0736 Peroxisome assembly fa 94.6 0.094 2E-06 60.4 7.7 92 139-254 672-775 (953)
378 TIGR03305 alt_F1F0_F1_bet alte 94.5 0.13 2.9E-06 57.2 8.6 92 161-254 137-243 (449)
379 COG0464 SpoVK ATPases of the A 94.5 0.28 6E-06 57.0 11.9 130 161-312 275-425 (494)
380 COG0465 HflB ATP-dependent Zn 94.5 0.13 2.9E-06 58.8 8.8 48 139-186 150-207 (596)
381 KOG2035 Replication factor C, 94.5 0.74 1.6E-05 46.8 12.8 223 147-387 19-282 (351)
382 COG1703 ArgK Putative periplas 94.5 0.074 1.6E-06 54.6 6.0 60 151-211 38-99 (323)
383 PRK00131 aroK shikimate kinase 94.5 0.035 7.6E-07 54.3 3.7 25 162-186 4-28 (175)
384 CHL00081 chlI Mg-protoporyphyr 94.4 0.05 1.1E-06 58.7 5.1 50 136-187 14-63 (350)
385 PF06309 Torsin: Torsin; Inte 94.4 0.17 3.8E-06 45.3 7.5 48 139-186 25-77 (127)
386 PF12775 AAA_7: P-loop contain 94.4 0.022 4.8E-07 59.8 2.3 35 151-186 23-57 (272)
387 cd03228 ABCC_MRP_Like The MRP 94.4 0.11 2.3E-06 50.7 6.9 25 162-186 28-52 (171)
388 PRK09519 recA DNA recombinatio 94.4 0.14 3.1E-06 60.9 9.1 85 162-254 60-149 (790)
389 cd02028 UMPK_like Uridine mono 94.4 0.032 6.9E-07 54.7 3.2 23 164-186 1-23 (179)
390 cd02020 CMPK Cytidine monophos 94.4 0.031 6.7E-07 52.8 3.0 23 164-186 1-23 (147)
391 PRK05439 pantothenate kinase; 94.4 0.24 5.3E-06 52.6 9.9 27 160-186 84-110 (311)
392 TIGR02322 phosphon_PhnN phosph 94.4 0.034 7.3E-07 54.7 3.4 24 163-186 2-25 (179)
393 TIGR00150 HI0065_YjeE ATPase, 94.4 0.063 1.4E-06 49.1 4.8 25 162-186 22-46 (133)
394 TIGR02655 circ_KaiC circadian 94.4 0.13 2.7E-06 59.3 8.4 41 161-204 262-302 (484)
395 cd03281 ABC_MSH5_euk MutS5 hom 94.3 0.04 8.6E-07 55.7 3.8 24 162-185 29-52 (213)
396 COG1224 TIP49 DNA helicase TIP 94.3 0.078 1.7E-06 55.5 5.8 54 139-193 39-95 (450)
397 PRK10751 molybdopterin-guanine 94.3 0.045 9.7E-07 52.7 3.9 27 161-187 5-31 (173)
398 cd01131 PilT Pilus retraction 94.3 0.048 1E-06 54.5 4.3 108 163-282 2-110 (198)
399 TIGR01039 atpD ATP synthase, F 94.3 0.29 6.3E-06 54.5 10.6 92 161-254 142-248 (461)
400 PF07724 AAA_2: AAA domain (Cd 94.3 0.046 1E-06 53.0 4.0 41 162-204 3-43 (171)
401 cd01122 GP4d_helicase GP4d_hel 94.3 0.31 6.7E-06 51.6 10.7 51 162-216 30-80 (271)
402 PRK00889 adenylylsulfate kinas 94.3 0.047 1E-06 53.5 4.1 26 161-186 3-28 (175)
403 PF10236 DAP3: Mitochondrial r 94.3 2.4 5.1E-05 45.6 17.4 49 291-339 258-306 (309)
404 PF00154 RecA: recA bacterial 94.3 0.095 2.1E-06 55.7 6.6 85 162-254 53-142 (322)
405 PRK07132 DNA polymerase III su 94.3 1.3 2.8E-05 47.1 15.1 165 150-341 5-184 (299)
406 PRK08927 fliI flagellum-specif 94.3 0.24 5.1E-06 55.1 9.9 89 161-254 157-259 (442)
407 TIGR02030 BchI-ChlI magnesium 94.3 0.067 1.5E-06 57.8 5.5 47 138-186 3-49 (337)
408 cd00227 CPT Chloramphenicol (C 94.3 0.039 8.6E-07 54.0 3.5 24 163-186 3-26 (175)
409 KOG3864 Uncharacterized conser 94.2 0.009 2E-07 57.4 -1.0 73 762-851 118-191 (221)
410 PRK05986 cob(I)alamin adenolsy 94.2 0.16 3.5E-06 49.4 7.5 117 162-281 22-158 (191)
411 PF03308 ArgK: ArgK protein; 94.2 0.11 2.3E-06 52.8 6.4 58 152-210 17-76 (266)
412 KOG1970 Checkpoint RAD17-RFC c 94.2 0.32 7E-06 54.1 10.5 48 147-199 88-142 (634)
413 PRK11823 DNA repair protein Ra 94.2 0.1 2.2E-06 59.1 7.1 86 162-253 80-166 (446)
414 cd02021 GntK Gluconate kinase 94.2 0.034 7.4E-07 52.8 2.8 23 164-186 1-23 (150)
415 PRK14530 adenylate kinase; Pro 94.1 0.041 9E-07 55.9 3.5 24 163-186 4-27 (215)
416 KOG3864 Uncharacterized conser 94.1 0.007 1.5E-07 58.1 -2.1 73 730-811 119-191 (221)
417 COG0529 CysC Adenylylsulfate k 94.1 0.17 3.7E-06 47.7 7.0 29 159-187 20-48 (197)
418 PF02562 PhoH: PhoH-like prote 94.0 0.091 2E-06 52.1 5.5 47 151-200 10-56 (205)
419 PRK05342 clpX ATP-dependent pr 94.0 0.1 2.3E-06 58.0 6.7 24 163-186 109-132 (412)
420 KOG1532 GTPase XAB1, interacts 94.0 0.05 1.1E-06 54.6 3.6 58 162-220 19-85 (366)
421 KOG0729 26S proteasome regulat 94.0 0.079 1.7E-06 52.8 5.0 71 161-253 210-280 (435)
422 PRK09280 F0F1 ATP synthase sub 94.0 0.29 6.3E-06 54.7 10.0 92 161-254 143-249 (463)
423 PRK13947 shikimate kinase; Pro 94.0 0.043 9.4E-07 53.5 3.3 23 164-186 3-25 (171)
424 PRK13949 shikimate kinase; Pro 94.0 0.045 9.8E-07 53.0 3.3 23 164-186 3-25 (169)
425 cd01136 ATPase_flagellum-secre 94.0 0.29 6.3E-06 52.4 9.6 88 162-254 69-170 (326)
426 PRK10416 signal recognition pa 94.0 0.37 8E-06 51.8 10.5 27 161-187 113-139 (318)
427 TIGR03881 KaiC_arch_4 KaiC dom 94.0 0.4 8.7E-06 49.2 10.6 40 162-204 20-59 (229)
428 PRK13765 ATP-dependent proteas 94.0 0.093 2E-06 61.5 6.4 75 139-220 31-105 (637)
429 TIGR03498 FliI_clade3 flagella 93.9 0.18 3.8E-06 56.1 8.1 88 162-254 140-241 (418)
430 PRK08149 ATP synthase SpaL; Va 93.9 0.27 5.8E-06 54.6 9.5 89 161-254 150-252 (428)
431 cd01134 V_A-ATPase_A V/A-type 93.9 0.17 3.8E-06 53.9 7.6 48 162-214 157-205 (369)
432 TIGR03263 guanyl_kin guanylate 93.9 0.042 9.1E-07 54.1 3.0 24 163-186 2-25 (180)
433 PRK14527 adenylate kinase; Pro 93.9 0.055 1.2E-06 53.8 3.9 26 161-186 5-30 (191)
434 PF00560 LRR_1: Leucine Rich R 93.9 0.027 5.9E-07 33.5 1.0 20 593-612 1-20 (22)
435 COG0003 ArsA Predicted ATPase 93.9 0.1 2.2E-06 55.7 6.0 48 162-212 2-49 (322)
436 TIGR01069 mutS2 MutS2 family p 93.9 0.025 5.5E-07 68.2 1.5 181 161-364 321-522 (771)
437 TIGR01040 V-ATPase_V1_B V-type 93.9 0.18 3.9E-06 55.9 7.9 94 161-254 140-258 (466)
438 PRK10463 hydrogenase nickel in 93.9 0.13 2.8E-06 53.8 6.4 36 151-186 93-128 (290)
439 COG1936 Predicted nucleotide k 93.8 0.048 1E-06 51.3 2.9 20 164-183 2-21 (180)
440 TIGR00073 hypB hydrogenase acc 93.8 0.065 1.4E-06 54.1 4.2 31 156-186 16-46 (207)
441 COG0467 RAD55 RecA-superfamily 93.8 0.08 1.7E-06 55.6 5.0 41 161-204 22-62 (260)
442 COG4240 Predicted kinase [Gene 93.8 0.29 6.3E-06 48.0 8.2 84 158-243 46-133 (300)
443 PF00625 Guanylate_kin: Guanyl 93.8 0.079 1.7E-06 52.3 4.7 36 162-200 2-37 (183)
444 PF03266 NTPase_1: NTPase; In 93.8 0.056 1.2E-06 52.2 3.4 23 165-187 2-24 (168)
445 TIGR00416 sms DNA repair prote 93.7 0.16 3.5E-06 57.6 7.5 39 162-203 94-132 (454)
446 TIGR01041 ATP_syn_B_arch ATP s 93.7 0.23 5E-06 55.7 8.5 92 162-254 141-249 (458)
447 TIGR03600 phage_DnaB phage rep 93.7 7.8 0.00017 43.9 21.2 52 162-217 194-245 (421)
448 PF02374 ArsA_ATPase: Anion-tr 93.7 0.084 1.8E-06 56.5 4.9 44 163-209 2-45 (305)
449 cd00820 PEPCK_HprK Phosphoenol 93.7 0.058 1.2E-06 47.1 3.0 22 162-183 15-36 (107)
450 PTZ00185 ATPase alpha subunit; 93.7 0.34 7.4E-06 54.2 9.6 94 161-254 188-300 (574)
451 CHL00060 atpB ATP synthase CF1 93.7 0.34 7.3E-06 54.4 9.7 92 161-254 160-273 (494)
452 PRK14529 adenylate kinase; Pro 93.7 0.23 4.9E-06 50.2 7.7 22 165-186 3-24 (223)
453 cd01125 repA Hexameric Replica 93.7 0.34 7.3E-06 50.2 9.3 23 164-186 3-25 (239)
454 COG1124 DppF ABC-type dipeptid 93.6 0.054 1.2E-06 54.0 3.1 25 162-186 33-57 (252)
455 PF06068 TIP49: TIP49 C-termin 93.6 0.1 2.2E-06 55.6 5.3 48 139-186 24-74 (398)
456 cd00464 SK Shikimate kinase (S 93.6 0.058 1.3E-06 51.5 3.3 22 165-186 2-23 (154)
457 cd00071 GMPK Guanosine monopho 93.6 0.05 1.1E-06 50.7 2.7 23 164-186 1-23 (137)
458 TIGR00764 lon_rel lon-related 93.6 0.21 4.5E-06 58.9 8.4 74 139-219 18-91 (608)
459 PRK00300 gmk guanylate kinase; 93.6 0.057 1.2E-06 54.5 3.3 25 162-186 5-29 (205)
460 TIGR00176 mobB molybdopterin-g 93.6 0.099 2.1E-06 49.8 4.7 24 164-187 1-24 (155)
461 PRK13407 bchI magnesium chelat 93.6 0.087 1.9E-06 56.8 4.8 48 137-186 6-53 (334)
462 PRK12339 2-phosphoglycerate ki 93.6 0.067 1.5E-06 53.1 3.7 25 162-186 3-27 (197)
463 PRK05922 type III secretion sy 93.6 0.38 8.2E-06 53.5 9.8 89 161-254 156-258 (434)
464 PRK06936 type III secretion sy 93.5 0.35 7.6E-06 53.8 9.4 89 161-254 161-263 (439)
465 cd01132 F1_ATPase_alpha F1 ATP 93.5 0.45 9.8E-06 49.3 9.7 88 162-254 69-172 (274)
466 TIGR01313 therm_gnt_kin carboh 93.5 0.048 1E-06 52.7 2.5 22 165-186 1-22 (163)
467 PRK03846 adenylylsulfate kinas 93.5 0.075 1.6E-06 53.2 4.0 27 160-186 22-48 (198)
468 PRK13975 thymidylate kinase; P 93.5 0.068 1.5E-06 53.5 3.7 24 163-186 3-26 (196)
469 COG2019 AdkA Archaeal adenylat 93.5 0.076 1.7E-06 49.5 3.5 25 162-186 4-28 (189)
470 PRK10078 ribose 1,5-bisphospho 93.4 0.059 1.3E-06 53.4 3.1 24 163-186 3-26 (186)
471 PF08477 Miro: Miro-like prote 93.4 0.068 1.5E-06 48.3 3.2 22 165-186 2-23 (119)
472 KOG0651 26S proteasome regulat 93.4 0.19 4.1E-06 51.7 6.5 70 162-253 166-235 (388)
473 PRK05057 aroK shikimate kinase 93.4 0.067 1.5E-06 52.1 3.3 24 163-186 5-28 (172)
474 PF13521 AAA_28: AAA domain; P 93.3 0.065 1.4E-06 51.7 3.2 21 165-185 2-22 (163)
475 PF01078 Mg_chelatase: Magnesi 93.3 0.12 2.7E-06 50.8 5.0 44 139-186 3-46 (206)
476 TIGR01287 nifH nitrogenase iro 93.3 0.11 2.4E-06 55.1 5.2 39 163-204 1-39 (275)
477 PLN02200 adenylate kinase fami 93.3 0.074 1.6E-06 54.5 3.6 25 162-186 43-67 (234)
478 PRK13695 putative NTPase; Prov 93.3 0.12 2.7E-06 50.4 5.0 34 164-199 2-35 (174)
479 TIGR03496 FliI_clade1 flagella 93.2 0.32 6.8E-06 54.1 8.6 88 162-254 137-238 (411)
480 cd01672 TMPK Thymidine monopho 93.2 0.19 4.2E-06 50.2 6.6 24 164-187 2-25 (200)
481 TIGR00041 DTMP_kinase thymidyl 93.2 0.21 4.5E-06 49.8 6.7 25 163-187 4-28 (195)
482 COG0194 Gmk Guanylate kinase [ 93.2 0.083 1.8E-06 50.5 3.4 25 162-186 4-28 (191)
483 COG0488 Uup ATPase components 93.1 0.13 2.7E-06 59.2 5.5 129 162-295 348-510 (530)
484 cd00984 DnaB_C DnaB helicase C 93.1 0.75 1.6E-05 47.7 11.0 50 162-215 13-62 (242)
485 PRK15429 formate hydrogenlyase 93.1 0.15 3.3E-06 61.7 6.5 46 139-186 376-423 (686)
486 PF05970 PIF1: PIF1-like helic 93.1 0.19 4.2E-06 55.5 6.8 40 148-187 8-47 (364)
487 PRK06731 flhF flagellar biosyn 93.1 0.5 1.1E-05 49.3 9.4 89 161-253 74-164 (270)
488 KOG0927 Predicted transporter 93.1 1.8 4E-05 48.3 13.9 97 162-258 416-542 (614)
489 PRK15453 phosphoribulokinase; 93.1 0.098 2.1E-06 54.1 4.1 27 160-186 3-29 (290)
490 PRK14737 gmk guanylate kinase; 93.1 0.08 1.7E-06 52.2 3.4 26 161-186 3-28 (186)
491 cd02029 PRK_like Phosphoribulo 93.1 0.4 8.6E-06 49.3 8.3 24 164-187 1-24 (277)
492 PF13086 AAA_11: AAA domain; P 93.1 0.21 4.5E-06 51.4 6.7 23 164-186 19-41 (236)
493 TIGR02655 circ_KaiC circadian 93.1 0.34 7.3E-06 55.8 8.9 42 161-204 20-61 (484)
494 PLN02796 D-glycerate 3-kinase 93.0 0.58 1.3E-05 50.2 9.9 26 161-186 99-124 (347)
495 CHL00059 atpA ATP synthase CF1 93.0 0.5 1.1E-05 52.9 9.7 89 161-254 140-244 (485)
496 KOG0739 AAA+-type ATPase [Post 93.0 0.27 5.8E-06 50.2 6.8 71 162-254 166-236 (439)
497 KOG0738 AAA+-type ATPase [Post 93.0 0.2 4.3E-06 53.2 6.1 25 162-186 245-269 (491)
498 PRK13946 shikimate kinase; Pro 93.0 0.08 1.7E-06 52.3 3.3 25 162-186 10-34 (184)
499 PRK07594 type III secretion sy 93.0 0.24 5.2E-06 55.0 7.3 89 161-254 154-256 (433)
500 PF03193 DUF258: Protein of un 93.0 0.14 3.1E-06 48.4 4.7 34 149-185 25-58 (161)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.2e-90 Score=811.36 Aligned_cols=822 Identities=30% Similarity=0.444 Sum_probs=620.9
Q ss_pred hhhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 042574 11 CKCVGPPICQYVRRHRKLSEIMRNLERALQELNSKKADIEATLKAECDLGNKQPSNEVNDWLENVERINNEAHSIEEEVK 90 (929)
Q Consensus 11 ~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~~~v~~Wl~~v~~~~~~~~d~~d~~~ 90 (929)
++++++.+.++...+.+.++++..+++++..|++++.|+++ .+.....+..|...+++++|+++++++.+.
T Consensus 9 ~~~~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a---------~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~ 79 (889)
T KOG4658|consen 9 VEKLDQLLNRESECLDGKDNYILELKENLKALQSALEDLDA---------KRDDLERRVNWEEDVGDLVYLAEDIIWLFL 79 (889)
T ss_pred hhhHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh---------hcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788999999999999999999999999999999999875 223346689999999999999999976532
Q ss_pred c-------Ccc---------------------cccccchHHHHHHHHHHHHHHHhhcCCcccccCCCCCCCCcccc---c
Q 042574 91 K-------GKY---------------------FSRARLGKHAEEKIQEVKEYHQKACSFTSLVIAPPPTGGLTLTT---A 139 (929)
Q Consensus 91 ~-------~~~---------------------~~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 139 (929)
- ... ..-+.+++++...+++++.+..++....+-.....+......|. .
T Consensus 80 v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 159 (889)
T KOG4658|consen 80 VEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSES 159 (889)
T ss_pred HHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCccc
Confidence 1 000 01124556667777777766655433221110111111111222 3
Q ss_pred cccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhc
Q 042574 140 TLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALK 219 (929)
Q Consensus 140 ~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 219 (929)
. ||. +..++++++.|.+++..+|+|+||||+||||||++++|+...+.++|+.++||+||+.++...++++|+..++
T Consensus 160 ~-VG~--e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~ 236 (889)
T KOG4658|consen 160 D-VGL--ETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLG 236 (889)
T ss_pred c-ccH--HHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhc
Confidence 3 998 7899999999999888999999999999999999999998558899999999999999999999999999988
Q ss_pred CCCCCCcc--HHHHHHHHHHHHHhcCcEEEEEecCCCcCCccccccCCCCCCCCcEEEEEeCccccccc-CCcce-Eecc
Q 042574 220 QSLPENED--KVRRAGRLSEMLKAKAKFVLILDDMWEAFPLEEVGIPEPSEENGCKLVITTRSLGVSRS-MDCKE-IGVE 295 (929)
Q Consensus 220 ~~~~~~~~--~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~-~~~~~-~~l~ 295 (929)
.......+ ....+..+.+.+ +++||+|||||||+..+|+.++.|+|...+||||++|||+++||.. |++.. ++++
T Consensus 237 ~~~~~~~~~~~~~~~~~i~~~L-~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~ 315 (889)
T KOG4658|consen 237 LLDEEWEDKEEDELASKLLNLL-EGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVE 315 (889)
T ss_pred cCCcccchhhHHHHHHHHHHHh-ccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccccc
Confidence 74332222 245566666666 5899999999999999999999999998899999999999999998 88766 9999
Q ss_pred cCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHHhhhcCCCChhHHHHHHHHHhhhhc-cCCCCch
Q 042574 296 LLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVASCMRGVDEIHEWRNALNELRGLVR-SRNGVNA 374 (929)
Q Consensus 296 ~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~l~~l~~~~~-~~~~~~~ 374 (929)
.|+++|||.||++.++....+..+.++++|++++++|+|+|||++++|++|+.|.+..+|+++.+.+..... ...++.+
T Consensus 316 ~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~ 395 (889)
T KOG4658|consen 316 CLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEE 395 (889)
T ss_pred ccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhh
Confidence 999999999999999887554556699999999999999999999999999999999999999999877733 3346678
Q ss_pred hhhhhHHhhcccCCChhhhhHhhhhccCCCCCccCHHHHHHHHHHcCcccchhcHHHHHHhHHHHHHHHHHccccccccC
Q 042574 375 DVLGRLEFSYHRLKDDKVQQCFLYCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLERAED 454 (929)
Q Consensus 375 ~~~~~l~~sy~~L~~~~~k~cfl~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~ 454 (929)
.++.++++||+.|| +++|.||+|||+||+||.|+++.|+.+||||||+.+.+++...+++|+.|+.+|++++|++...+
T Consensus 396 ~i~~iLklSyd~L~-~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 396 SILPILKLSYDNLP-EELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hhHHhhhccHhhhh-HHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 99999999999999 99999999999999999999999999999999999977788899999999999999999998753
Q ss_pred ---CCeEEechHHHHHHHHHhc-----cCCceEEEcCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEE
Q 042574 455 ---GGCVKMHDLIRDMALRIKS-----KSPLFMVKAGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTL 526 (929)
Q Consensus 455 ---~~~~~mHdlv~~~a~~~~~-----~~~~~~~~~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L 526 (929)
..+|+|||+|||+|.++++ +++ .++..+.++.++|....| ..+|++++.+|.+..++.. ..+++|++|
T Consensus 475 ~~~~~~~kmHDvvRe~al~ias~~~~~~e~-~iv~~~~~~~~~~~~~~~-~~~rr~s~~~~~~~~~~~~--~~~~~L~tL 550 (889)
T KOG4658|consen 475 EGRKETVKMHDVVREMALWIASDFGKQEEN-QIVSDGVGLSEIPQVKSW-NSVRRMSLMNNKIEHIAGS--SENPKLRTL 550 (889)
T ss_pred ccceeEEEeeHHHHHHHHHHhccccccccc-eEEECCcCccccccccch-hheeEEEEeccchhhccCC--CCCCccceE
Confidence 2789999999999999999 565 556666666777776555 6789999999998887654 367799999
Q ss_pred EcccCCc-CccCcHHHHccCCCCcEEEecCCC-CcccCcccccccccceeecccccccccCc-cccccCCCCEEEccCC-
Q 042574 527 LLQRNGY-LQRIPECFFMHMRGLKVLNLSHTN-IEVLPSSVSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLERT- 602 (929)
Q Consensus 527 ~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~- 602 (929)
.+.+|.. +..++..+|..++.|++|||++|. +.++|++|+.|.|||||+++++ .+..+| ++++|.+|.+|++..+
T Consensus 551 ll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 551 LLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTG 629 (889)
T ss_pred EEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheecccccc
Confidence 9999973 778888889999999999999875 7799999999999999999985 566777 7888888888888877
Q ss_pred CCccccccccCCCCCCEEEccCCCC--ccCCCCccCCCCCccEEEeecCCchhcccHHHHhcccccccEeEEEecccccc
Q 042574 603 WIEEVPEGMEMLENLSHLYLSSPPL--KKFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDGLDSFEGHFSELKDF 680 (929)
Q Consensus 603 ~i~~lp~~i~~l~~L~~L~l~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~~l~~l 680 (929)
.+..+|..+..|++|++|.+..... ...-.+.+.+|.+|+.|.+..... ..++.+..+. .|..+.....
T Consensus 630 ~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~---~~~e~l~~~~-~L~~~~~~l~----- 700 (889)
T KOG4658|consen 630 RLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV---LLLEDLLGMT-RLRSLLQSLS----- 700 (889)
T ss_pred ccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh---HhHhhhhhhH-HHHHHhHhhh-----
Confidence 4445554455588888888765431 111112234444444444432111 1111111111 1111100000
Q ss_pred hhcccccCCCCceeEEEEecccccccccccCcCCCceeEeecccccCCCCcccCcccccceeeecccCcccccccCcccc
Q 042574 681 NIYVKSTDGRGSKHYCLLLSAYRMGAFMITGLELPKSVILNNYKICRGEEPIVLPEDVQFLRMFEVSDVASLNDVLPREQ 760 (929)
Q Consensus 681 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~L~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~ 760 (929)
+..+........+..+.+|+.|.|.+|...+...+..
T Consensus 701 ---------------------------------------~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~---- 737 (889)
T KOG4658|consen 701 ---------------------------------------IEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWE---- 737 (889)
T ss_pred ---------------------------------------hcccccceeecccccccCcceEEEEcCCCchhhcccc----
Confidence 0000001111234567789999999998764332111
Q ss_pred Cccccc-ccccceeEEEEecCCCccccchhchhhhcCCccEEEEecCcchhhhhccCcchhhhhhccccccccccCCCcc
Q 042574 761 GLVNIG-KFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDSIKEIIAVEDEETEKELATNTIINTVTLPRLK 839 (929)
Q Consensus 761 ~l~~l~-~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~ 839 (929)
+-.... .|+ ++..+.+.+|..+.++.+.. -.|+|+.|.+..|+.++++++........ ......|+++.
T Consensus 738 ~~~~~~~~f~-~l~~~~~~~~~~~r~l~~~~---f~~~L~~l~l~~~~~~e~~i~~~k~~~~l------~~~i~~f~~~~ 807 (889)
T KOG4658|consen 738 ESLIVLLCFP-NLSKVSILNCHMLRDLTWLL---FAPHLTSLSLVSCRLLEDIIPKLKALLEL------KELILPFNKLE 807 (889)
T ss_pred cccchhhhHH-HHHHHHhhccccccccchhh---ccCcccEEEEecccccccCCCHHHHhhhc------ccEEecccccc
Confidence 111112 377 89999999999888865533 34689999999999998887544221100 01234688888
Q ss_pred ee-ecccccccccccccCccccCCCccEEEEeccCCCccccCCCCccCCCCCCCC-CCcceEechhhhhhhcccCCcccc
Q 042574 840 KL-RFYFLREFKRFCSNNGVLVCNSLQEIKVRGCPKLKRLSLSLPLLDNGQPSPP-PALEVIEIEKELWESLEWDQPNAK 917 (929)
Q Consensus 840 ~L-~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~~L~~lP~~l~~l~~~~~~~~-~~L~~i~~~~~~w~~l~w~~~~~~ 917 (929)
.+ .+.+.+.+..+.. ....++.|+.+.|..||+++++|... ...+..| +.++.+ -+.+|-+.++|.+...+
T Consensus 808 ~l~~~~~l~~l~~i~~--~~l~~~~l~~~~ve~~p~l~~~P~~~----~~~i~~~~~~~~~~-~~~~~~~~v~~~~~~~~ 880 (889)
T KOG4658|consen 808 GLRMLCSLGGLPQLYW--LPLSFLKLEELIVEECPKLGKLPLLS----TLTIVGCEEKLKEY-PDGEWLEGVYWEDELTK 880 (889)
T ss_pred cceeeecCCCCceeEe--cccCccchhheehhcCcccccCcccc----ccceeccccceeec-CCccceeeEEehhhhhh
Confidence 88 6888888888877 56677889999999999999998742 2334454 433333 36678889999999887
Q ss_pred ccc
Q 042574 918 DVL 920 (929)
Q Consensus 918 ~~~ 920 (929)
..+
T Consensus 881 ~~~ 883 (889)
T KOG4658|consen 881 LRF 883 (889)
T ss_pred hhc
Confidence 766
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.6e-61 Score=602.62 Aligned_cols=666 Identities=21% Similarity=0.303 Sum_probs=457.0
Q ss_pred ccccccchHHHHHHHHHHhc--CCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEE---CCC---------
Q 042574 139 ATLAGKKTKKVVERIWEDLM--GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV---SQP--------- 204 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~---s~~--------- 204 (929)
..+||+ +..++++..++. .+++++|+||||||+||||||+++|++. ...|+..+|+.. +..
T Consensus 184 ~~~vG~--~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 184 EDFVGI--EDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred ccccch--HHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhcccccc
Confidence 578998 667777777763 4568999999999999999999999987 357888777642 111
Q ss_pred --CC-HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCCccccccCCCCCCCCcEEEEEeCcc
Q 042574 205 --LD-LIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFPLEEVGIPEPSEENGCKLVITTRSL 281 (929)
Q Consensus 205 --~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~ 281 (929)
++ ...++.+++.++......... ....+.+.+ +++|+||||||||+..+|+.+.....+.++||+||||||+.
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~~~~---~~~~~~~~L-~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~ 334 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDIKIY---HLGAMEERL-KHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDK 334 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCcccC---CHHHHHHHH-hCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcH
Confidence 11 123444555544322111110 012334444 57999999999999888888876666667899999999999
Q ss_pred cccccCCcce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHHhhhcCCCChhHHHHHHH
Q 042574 282 GVSRSMDCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVASCMRGVDEIHEWRNALN 360 (929)
Q Consensus 282 ~v~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~l~ 360 (929)
.++..+++.. |+++.|++++||+||+++|+.... .++.+.+++++|+++|+|+|||++++|+.|+++ +..+|+.+++
T Consensus 335 ~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~-~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~ 412 (1153)
T PLN03210 335 HFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNS-PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLP 412 (1153)
T ss_pred HHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCC-CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 9998777666 999999999999999999987543 455688999999999999999999999999985 6789999999
Q ss_pred HHhhhhccCCCCchhhhhhHHhhcccCCChhhhhHhhhhccCCCCCccCHHHHHHHHHHcCcccchhcHHHHHHhHHHHH
Q 042574 361 ELRGLVRSRNGVNADVLGRLEFSYHRLKDDKVQQCFLYCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQAKYDRGHTIL 440 (929)
Q Consensus 361 ~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l 440 (929)
+++... ...+.++|++||+.|+++..|.||+++|+|+.++.+ ..+..|++.+.... +..+
T Consensus 413 ~L~~~~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~-----------~~~l 472 (1153)
T PLN03210 413 RLRNGL------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV-----------NIGL 472 (1153)
T ss_pred HHHhCc------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc-----------hhCh
Confidence 987532 368999999999999855699999999999988655 34677887765432 2238
Q ss_pred HHHHHccccccccCCCeEEechHHHHHHHHHhccCC------ceEEEcC------------cccc-------c-----C-
Q 042574 441 NRLVNCCLLERAEDGGCVKMHDLIRDMALRIKSKSP------LFMVKAG------------LRLL-------K-----F- 489 (929)
Q Consensus 441 ~~L~~~~ll~~~~~~~~~~mHdlv~~~a~~~~~~~~------~~~~~~~------------~~l~-------~-----~- 489 (929)
+.|+++||++... +.+.|||++|+||+++++++. .+..... .... . +
T Consensus 473 ~~L~~ksLi~~~~--~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~ 550 (1153)
T PLN03210 473 KNLVDKSLIHVRE--DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIH 550 (1153)
T ss_pred HHHHhcCCEEEcC--CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeec
Confidence 8999999998743 479999999999999987542 1111100 0000 0 0
Q ss_pred CCcccccccccEEEcccCCCC-------cCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccC
Q 042574 490 PGEQEWEENLERVSLMDNHIE-------EIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLP 562 (929)
Q Consensus 490 p~~~~~~~~l~~L~l~~~~~~-------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp 562 (929)
+.....+.+++.|.+..+... .+|..+..-.++|+.|.+.++. +..+|..+ .+.+|+.|+++++.+..+|
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f--~~~~L~~L~L~~s~l~~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNF--RPENLVKLQMQGSKLEKLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC-CCCCCCcC--CccCCcEEECcCccccccc
Confidence 001223456666766544211 2343333223468888888876 77788765 5789999999999999999
Q ss_pred cccccccccceeecccccccccCccccccCCCCEEEccCC-CCccccccccCCCCCCEEEccCCC-CccCCCCccCCCCC
Q 042574 563 SSVSNLTNLRSLLLRWCRRLKRVPSVAKLLALQYLDLERT-WIEEVPEGMEMLENLSHLYLSSPP-LKKFPTGILPRLRN 640 (929)
Q Consensus 563 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~ 640 (929)
..+..+++|++|++++|..+..+|.++.+++|++|++++| .+..+|..+.++++|++|++++|. +..+|.+. ++++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~s 705 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKS 705 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCC
Confidence 9999999999999999988899999999999999999998 778999999999999999999975 77787753 7999
Q ss_pred ccEEEeecCCchhcccHHHHhcccccccEeEEEecccccchhcccccCCCCceeEEEEecccccccccccCcCCCceeEe
Q 042574 641 LYKLKLSFGNEALRETVEEAARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMITGLELPKSVIL 720 (929)
Q Consensus 641 L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~L 720 (929)
|+.|++++|.... .+.....+|+.|.+....+..++... ...+|..+.+........ .
T Consensus 706 L~~L~Lsgc~~L~-----~~p~~~~nL~~L~L~~n~i~~lP~~~---~l~~L~~L~l~~~~~~~l--~------------ 763 (1153)
T PLN03210 706 LYRLNLSGCSRLK-----SFPDISTNISWLDLDETAIEEFPSNL---RLENLDELILCEMKSEKL--W------------ 763 (1153)
T ss_pred CCEEeCCCCCCcc-----ccccccCCcCeeecCCCccccccccc---cccccccccccccchhhc--c------------
Confidence 9999998764221 11111226777776555444433221 111222221110000000 0
Q ss_pred ecccccCCCCcccCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchhhhcCCccE
Q 042574 721 NNYKICRGEEPIVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEV 800 (929)
Q Consensus 721 ~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~ 800 (929)
..+. .-.......+++|+.|.+.+|..+..+ +.+++.++ +|+.|+|++|+.++.+|... ++++|+.
T Consensus 764 ~~~~-~l~~~~~~~~~sL~~L~Ls~n~~l~~l---------P~si~~L~-~L~~L~Ls~C~~L~~LP~~~---~L~sL~~ 829 (1153)
T PLN03210 764 ERVQ-PLTPLMTMLSPSLTRLFLSDIPSLVEL---------PSSIQNLH-KLEHLEIENCINLETLPTGI---NLESLES 829 (1153)
T ss_pred cccc-ccchhhhhccccchheeCCCCCCcccc---------ChhhhCCC-CCCEEECCCCCCcCeeCCCC---CccccCE
Confidence 0000 000001223467888888777655443 22345666 88888888888888776522 5678888
Q ss_pred EEEecCcchhhhhccCcchhhhh--hccccc--cccccCCCcceeecccccccccccccCccccCCCccEEEEeccCCCc
Q 042574 801 LKVYGCDSIKEIIAVEDEETEKE--LATNTI--INTVTLPRLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCPKLK 876 (929)
Q Consensus 801 L~i~~c~~l~~i~~~~~~~~~~~--~~~~~~--~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~~L~ 876 (929)
|++++|..+..++........-. .+.... .....+++|+.|++++|++|+.++. ....+++|+.+++.+|++|+
T Consensus 830 L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~--~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 830 LDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL--NISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred EECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc--ccccccCCCeeecCCCcccc
Confidence 88888877766543211000000 000000 1122577788888888888877776 45566778888888888777
Q ss_pred cccC
Q 042574 877 RLSL 880 (929)
Q Consensus 877 ~lP~ 880 (929)
.++.
T Consensus 908 ~~~l 911 (1153)
T PLN03210 908 EASW 911 (1153)
T ss_pred cccC
Confidence 6553
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.9e-42 Score=372.15 Aligned_cols=276 Identities=37% Similarity=0.666 Sum_probs=223.6
Q ss_pred HHHHHHHHHHhcC--CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCC-
Q 042574 147 KKVVERIWEDLMG--DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLP- 223 (929)
Q Consensus 147 ~~~~~~l~~~l~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~- 223 (929)
+.++++|.+.|.+ ++.++|+|+||||+||||||++++++.. ...+|+.++|+.++...+...++..|+.+++....
T Consensus 2 e~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~-~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLR-IKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHH-HCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccc-cccccccccccccccccccccccccccccccccccc
Confidence 6788999999988 7799999999999999999999999863 67899999999999999999999999999987743
Q ss_pred --CCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCCccccccCCCCCCCCcEEEEEeCcccccccCCc-ce-EecccCCH
Q 042574 224 --ENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFPLEEVGIPEPSEENGCKLVITTRSLGVSRSMDC-KE-IGVELLSQ 299 (929)
Q Consensus 224 --~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~~~-~~-~~l~~L~~ 299 (929)
...+.......+.+.+ +++++||||||||+...|+.+..+++....|++||||||+..++..++. .. +++++|++
T Consensus 81 ~~~~~~~~~~~~~l~~~L-~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELL-KDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHH-CCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhh-ccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2345555666677766 5679999999999998888888777777789999999999999877664 33 99999999
Q ss_pred HHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHHhhhcCCCChhHHHHHHHHHhhhhccCCCCchhhhhh
Q 042574 300 EEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVASCMRGVDEIHEWRNALNELRGLVRSRNGVNADVLGR 379 (929)
Q Consensus 300 ~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~ 379 (929)
++|++||.+.++.......+..++.+++|+++|+|+||||+++|++|+.+.+..+|+.+++.+........+....++.+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999998766522345567789999999999999999999999776678899999999887765434456889999
Q ss_pred HHhhcccCCChhhhhHhhhhccCCCCCccCHHHHHHHHHHcCcccc
Q 042574 380 LEFSYHRLKDDKVQQCFLYCALYPEDFAIPKEELIDYWIAEGFIEE 425 (929)
Q Consensus 380 l~~sy~~L~~~~~k~cfl~~a~fp~~~~i~~~~li~~w~a~g~i~~ 425 (929)
+.+||+.|| +++|+||+|||+||+++.|+++.++++|+++|||..
T Consensus 240 l~~s~~~L~-~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 240 LELSYDSLP-DELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHSSH-TCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ceechhcCC-ccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 999999999 699999999999999999999999999999999976
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.84 E-value=2e-20 Score=235.53 Aligned_cols=361 Identities=18% Similarity=0.174 Sum_probs=156.0
Q ss_pred cccccEEEcccCCCC-cCCCCCCCCCCcccEEEcccCCcCcc----------------------CcHHHHccCCCCcEEE
Q 042574 496 EENLERVSLMDNHIE-EIPSNMSPHCKILSTLLLQRNGYLQR----------------------IPECFFMHMRGLKVLN 552 (929)
Q Consensus 496 ~~~l~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~----------------------~~~~~~~~l~~L~~L~ 552 (929)
.++++.|++++|.+. .+|...+..+++|++|++++|..... +|..+ +++++|++|+
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~ 170 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLD 170 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHH-hcCCCCCEEE
Confidence 344555555555544 34444444455555555555543333 33332 4444444444
Q ss_pred ecCCCCc-ccCcccccccccceeecccccccccCc-cccccCCCCEEEccCCCCc-cccccccCCCCCCEEEccCCCCcc
Q 042574 553 LSHTNIE-VLPSSVSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIE-EVPEGMEMLENLSHLYLSSPPLKK 629 (929)
Q Consensus 553 l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~ 629 (929)
+++|.+. .+|..++++++|++|++++|.....+| .++++++|++|++++|.+. .+|..++++++|++|++++|.+..
T Consensus 171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 250 (968)
T PLN00113 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250 (968)
T ss_pred CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc
Confidence 4444433 344444444444444444444333334 3444444555555444443 344444444555555554444433
Q ss_pred CCCCccCCCCCccEEEeecCCchhcccHHHHhcccccccEeEEEeccccc-chhcccccCCCCceeEEEEeccccc-ccc
Q 042574 630 FPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDGLDSFEGHFSELKD-FNIYVKSTDGRGSKHYCLLLSAYRM-GAF 707 (929)
Q Consensus 630 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~~l~~-l~~~~~~~~~~~l~~l~~~~~~~~~-~~~ 707 (929)
..+..++++++|++|+++.|.. .......+..+. +|+.|.+..+.+.. .+... .....|+.+.+..+.... ...
T Consensus 251 ~~p~~l~~l~~L~~L~L~~n~l-~~~~p~~l~~l~-~L~~L~Ls~n~l~~~~p~~~--~~l~~L~~L~l~~n~~~~~~~~ 326 (968)
T PLN00113 251 PIPSSLGNLKNLQYLFLYQNKL-SGPIPPSIFSLQ-KLISLDLSDNSLSGEIPELV--IQLQNLEILHLFSNNFTGKIPV 326 (968)
T ss_pred ccChhHhCCCCCCEEECcCCee-eccCchhHhhcc-CcCEEECcCCeeccCCChhH--cCCCCCcEEECCCCccCCcCCh
Confidence 3233344455555555443321 111122333444 44444443322211 11000 011233333332222211 111
Q ss_pred cccCcCCCceeEeecccccCCC-CcccCcccccceeeecccCcccccccCcc---------------ccCcccccccccc
Q 042574 708 MITGLELPKSVILNNYKICRGE-EPIVLPEDVQFLRMFEVSDVASLNDVLPR---------------EQGLVNIGKFSHD 771 (929)
Q Consensus 708 ~~~~~~~~~~l~L~~~~~~~~~-~~~~~~~~L~~L~i~~~~~~~~l~~~~~~---------------~~~l~~l~~~~~~ 771 (929)
....++.++.+.+..+.+.+.. ..+..+++|+.|++.++.-...+++.... ......++.++ +
T Consensus 327 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~-~ 405 (968)
T PLN00113 327 ALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR-S 405 (968)
T ss_pred hHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCC-C
Confidence 1222344555555544443222 22334555666666554322111100000 00011123334 5
Q ss_pred eeEEEEecCCCccccchhchhhhcCCccEEEEecCcchhhhhccCcchhhhhhccccccccccCCCcceeeccccccccc
Q 042574 772 LKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDSIKEIIAVEDEETEKELATNTIINTVTLPRLKKLRFYFLREFKR 851 (929)
Q Consensus 772 L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~ 851 (929)
|+.|.+.+|.-...+|. .+..+++|+.|+++++. +...+. .....+|+|+.|++++|.-...
T Consensus 406 L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~Ls~N~-l~~~~~---------------~~~~~l~~L~~L~L~~n~~~~~ 467 (968)
T PLN00113 406 LRRVRLQDNSFSGELPS--EFTKLPLVYFLDISNNN-LQGRIN---------------SRKWDMPSLQMLSLARNKFFGG 467 (968)
T ss_pred CCEEECcCCEeeeECCh--hHhcCCCCCEEECcCCc-ccCccC---------------hhhccCCCCcEEECcCceeeee
Confidence 55555555432222221 23445555555555542 221110 1122578888888888766555
Q ss_pred ccccCccccCCCccEEEEeccCCCccccCCCC
Q 042574 852 FCSNNGVLVCNSLQEIKVRGCPKLKRLSLSLP 883 (929)
Q Consensus 852 i~~~~~~~~~p~L~~L~I~~C~~L~~lP~~l~ 883 (929)
++. ....++|+.|++++|.--..+|..+.
T Consensus 468 ~p~---~~~~~~L~~L~ls~n~l~~~~~~~~~ 496 (968)
T PLN00113 468 LPD---SFGSKRLENLDLSRNQFSGAVPRKLG 496 (968)
T ss_pred cCc---ccccccceEEECcCCccCCccChhhh
Confidence 553 23457888888888865556665443
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.83 E-value=4.9e-23 Score=219.26 Aligned_cols=341 Identities=20% Similarity=0.250 Sum_probs=243.3
Q ss_pred eEEEcCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCc-CccCcHHHHccCCCCcEEEecCC
Q 042574 478 FMVKAGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGY-LQRIPECFFMHMRGLKVLNLSHT 556 (929)
Q Consensus 478 ~~~~~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~ 556 (929)
+.......+..+|+....+.++++|++..|++.++-..+ ..++.||.+.+..|+. ...+|..+| ++..|.+|||++|
T Consensus 36 WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShN 113 (1255)
T KOG0444|consen 36 WLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGEL-SDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHN 113 (1255)
T ss_pred EEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhh-ccchhhHHHhhhccccccCCCCchhc-ccccceeeecchh
Confidence 344455677888988888899999999999988775554 4789999999999873 345899986 7999999999999
Q ss_pred CCcccCcccccccccceeecccccccccCc--cccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCc
Q 042574 557 NIEVLPSSVSNLTNLRSLLLRWCRRLKRVP--SVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGI 634 (929)
Q Consensus 557 ~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~ 634 (929)
.+.+.|..+..-+++-.|+|++| .+..+| -+-+|+-|-+|||++|+++.+|+.+.+|..|++|.|++|++..+....
T Consensus 114 qL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ 192 (1255)
T KOG0444|consen 114 QLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ 192 (1255)
T ss_pred hhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc
Confidence 99999999999999999999997 567777 378999999999999999999999999999999999999987766666
Q ss_pred cCCCCCccEEEeecCCchhcccHHHHhcccccccEeEEEecccccchhcccccCCCCceeEEEEecccccccccccCcCC
Q 042574 635 LPRLRNLYKLKLSFGNEALRETVEEAARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMITGLEL 714 (929)
Q Consensus 635 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 714 (929)
+..+++|+.|++++...........+..+. +|..++++.++++.++..+-.. ..
T Consensus 193 LPsmtsL~vLhms~TqRTl~N~Ptsld~l~-NL~dvDlS~N~Lp~vPecly~l-------------------------~~ 246 (1255)
T KOG0444|consen 193 LPSMTSLSVLHMSNTQRTLDNIPTSLDDLH-NLRDVDLSENNLPIVPECLYKL-------------------------RN 246 (1255)
T ss_pred CccchhhhhhhcccccchhhcCCCchhhhh-hhhhccccccCCCcchHHHhhh-------------------------hh
Confidence 788999999999865433333334455555 6667777666665554432111 11
Q ss_pred CceeEeecccccCCCCcccCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchhhh
Q 042574 715 PKSVILNNYKICRGEEPIVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPA 794 (929)
Q Consensus 715 ~~~l~L~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~ 794 (929)
++.++|+...+..-......-.+|+.|.++... ++.+ +..+..++ +|++|++.+ ++++.-.....+..
T Consensus 247 LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~L---------P~avcKL~-kL~kLy~n~-NkL~FeGiPSGIGK 314 (1255)
T KOG0444|consen 247 LRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVL---------PDAVCKLT-KLTKLYANN-NKLTFEGIPSGIGK 314 (1255)
T ss_pred hheeccCcCceeeeeccHHHHhhhhhhccccch-hccc---------hHHHhhhH-HHHHHHhcc-CcccccCCccchhh
Confidence 223333322222221223334456666665543 2222 12234566 888888777 45543212235677
Q ss_pred cCCccEEEEecCcchhhhhccCcchhhhhhccccccccccCCCcceeecccccccccccccCccccCCCccEEEEeccCC
Q 042574 795 LQNLEVLKVYGCDSIKEIIAVEDEETEKELATNTIINTVTLPRLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCPK 874 (929)
Q Consensus 795 L~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~~ 874 (929)
|.+|+.++..+ +.++-++ .....+++|+.|.|.. ..|..+|. +...+|.|+.|++++.|+
T Consensus 315 L~~Levf~aan-N~LElVP----------------EglcRC~kL~kL~L~~-NrLiTLPe--aIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 315 LIQLEVFHAAN-NKLELVP----------------EGLCRCVKLQKLKLDH-NRLITLPE--AIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred hhhhHHHHhhc-cccccCc----------------hhhhhhHHHHHhcccc-cceeechh--hhhhcCCcceeeccCCcC
Confidence 77888877776 4454443 2233688999999954 66777876 677789999999999999
Q ss_pred Ccccc
Q 042574 875 LKRLS 879 (929)
Q Consensus 875 L~~lP 879 (929)
|..-|
T Consensus 375 LVMPP 379 (1255)
T KOG0444|consen 375 LVMPP 379 (1255)
T ss_pred ccCCC
Confidence 98655
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=8.1e-20 Score=230.12 Aligned_cols=176 Identities=26% Similarity=0.231 Sum_probs=90.1
Q ss_pred ccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCc-ccCcccccccccce
Q 042574 495 WEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIE-VLPSSVSNLTNLRS 573 (929)
Q Consensus 495 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~ 573 (929)
..+++++|++++|.+....+..+..+++|++|++++|.....+|..+ +++++|++|++++|.+. .+|..++++++|++
T Consensus 186 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 264 (968)
T PLN00113 186 NLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264 (968)
T ss_pred hCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhCCCCCCE
Confidence 34455556665555442222222355556666665555444444443 45556666666655554 45555555666666
Q ss_pred eecccccccccCc-cccccCCCCEEEccCCCCc-cccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCCc
Q 042574 574 LLLRWCRRLKRVP-SVAKLLALQYLDLERTWIE-EVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGNE 651 (929)
Q Consensus 574 L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 651 (929)
|++++|.....+| .+.++++|++|++++|.+. .+|..+.++++|++|++++|.+....+..+.++++|+.|+++.|..
T Consensus 265 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 344 (968)
T PLN00113 265 LFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344 (968)
T ss_pred EECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC
Confidence 6665554444444 4555556666666655554 3444455555666666655555444344455555566655554421
Q ss_pred hhcccHHHHhcccccccEeEEE
Q 042574 652 ALRETVEEAARLSDGLDSFEGH 673 (929)
Q Consensus 652 ~~~~~~~~l~~l~~~L~~L~~~ 673 (929)
.......+..+. +|+.|.++
T Consensus 345 -~~~~p~~l~~~~-~L~~L~Ls 364 (968)
T PLN00113 345 -SGEIPKNLGKHN-NLTVLDLS 364 (968)
T ss_pred -cCcCChHHhCCC-CCcEEECC
Confidence 111223344444 55555543
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.79 E-value=2.1e-18 Score=217.10 Aligned_cols=338 Identities=21% Similarity=0.232 Sum_probs=214.0
Q ss_pred cccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCC-CcccCccccccccccee
Q 042574 496 EENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTN-IEVLPSSVSNLTNLRSL 574 (929)
Q Consensus 496 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L 574 (929)
+.+++.|.+.++.+..+|..+ .+.+|+.|++.+|. +..++..+ ..+++|++|+|+++. +..+| .++.+++|++|
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~-l~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L 662 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSK-LEKLWDGV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETL 662 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcC--CccCCcEEECcCcc-cccccccc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEE
Confidence 457999999999888888765 56899999999987 77787765 789999999999875 66777 48889999999
Q ss_pred ecccccccccCc-cccccCCCCEEEccCC-CCccccccccCCCCCCEEEccCCC-CccCCCCccCCCCCccEEEeecCCc
Q 042574 575 LLRWCRRLKRVP-SVAKLLALQYLDLERT-WIEEVPEGMEMLENLSHLYLSSPP-LKKFPTGILPRLRNLYKLKLSFGNE 651 (929)
Q Consensus 575 ~l~~~~~~~~~~-~~~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~ 651 (929)
++++|..+..+| +++++++|+.|++++| .++.+|..+ ++++|++|++++|. +..+|. ..++|+.|+++.+..
T Consensus 663 ~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i 737 (1153)
T PLN03210 663 KLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAI 737 (1153)
T ss_pred EecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCcc
Confidence 999999888888 7999999999999998 788898776 78999999999986 344442 246788888886542
Q ss_pred hhcccHHHHhcccccccEeEEEecccccchhccc------ccCCCCceeEEEEeccc-ccccccccCcCCCceeEeeccc
Q 042574 652 ALRETVEEAARLSDGLDSFEGHFSELKDFNIYVK------STDGRGSKHYCLLLSAY-RMGAFMITGLELPKSVILNNYK 724 (929)
Q Consensus 652 ~~~~~~~~l~~l~~~L~~L~~~~~~l~~l~~~~~------~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~l~L~~~~ 724 (929)
. .+.....+. +|..|.+.......+..... ....++|..+.+..+.. ...+.....+..++.+.+.+|.
T Consensus 738 ~---~lP~~~~l~-~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~ 813 (1153)
T PLN03210 738 E---EFPSNLRLE-NLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI 813 (1153)
T ss_pred c---ccccccccc-ccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence 1 111111234 55544443211000000000 00011223222221110 0011111223334444444433
Q ss_pred ccCCCCcccCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchhhhcCCccEEEEe
Q 042574 725 ICRGEEPIVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVY 804 (929)
Q Consensus 725 ~~~~~~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~ 804 (929)
..........+++|+.|.+.+|..+..++ ..+++|+.|+|++ +.++.+|. .+..+++|+.|+++
T Consensus 814 ~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p-------------~~~~nL~~L~Ls~-n~i~~iP~--si~~l~~L~~L~L~ 877 (1153)
T PLN03210 814 NLETLPTGINLESLESLDLSGCSRLRTFP-------------DISTNISDLNLSR-TGIEEVPW--WIEKFSNLSFLDMN 877 (1153)
T ss_pred CcCeeCCCCCccccCEEECCCCCcccccc-------------ccccccCEeECCC-CCCccChH--HHhcCCCCCEEECC
Confidence 22111111134555555555555443321 1113677777766 35565554 46678999999999
Q ss_pred cCcchhhhhccCcchhhhhhccccccccccCCCcceeecccccccccccccCc-----------cccCCCccEEEEeccC
Q 042574 805 GCDSIKEIIAVEDEETEKELATNTIINTVTLPRLKKLRFYFLREFKRFCSNNG-----------VLVCNSLQEIKVRGCP 873 (929)
Q Consensus 805 ~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~-----------~~~~p~L~~L~I~~C~ 873 (929)
+|++++.++. ....+++|+.|.+++|++|..++.... ...+|+...+.+.+|.
T Consensus 878 ~C~~L~~l~~----------------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~ 941 (1153)
T PLN03210 878 GCNNLQRVSL----------------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCF 941 (1153)
T ss_pred CCCCcCccCc----------------ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhcccccccc
Confidence 9999988752 223589999999999999987754211 1235566777888998
Q ss_pred CCcccc
Q 042574 874 KLKRLS 879 (929)
Q Consensus 874 ~L~~lP 879 (929)
+|..-+
T Consensus 942 ~L~~~a 947 (1153)
T PLN03210 942 NLDQEA 947 (1153)
T ss_pred CCCchh
Confidence 876543
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.78 E-value=5.2e-20 Score=195.54 Aligned_cols=366 Identities=19% Similarity=0.201 Sum_probs=181.4
Q ss_pred ccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccC-cccccccccceee
Q 042574 497 ENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLP-SSVSNLTNLRSLL 575 (929)
Q Consensus 497 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~ 575 (929)
...+.|++++|.+.++....|.++++|+.+++.+|. +..+|... ....+|+.|+|.+|.|+++- +++..++.|+.||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccch-hhhccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 345666666666666655555666666666666664 55566532 33445666666666666542 3456666666666
Q ss_pred cccccccccCc--cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCCch
Q 042574 576 LRWCRRLKRVP--SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGNEA 652 (929)
Q Consensus 576 l~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 652 (929)
|+.| .+..+| ++..-.++++|+|++|+|+.+-.+ +.++.+|..|.|+.|.++.+|..+|.+|++|+.|++..|...
T Consensus 156 LSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 156 LSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hhhc-hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence 6665 344444 455556666777776666655443 566666666666666666666666666667776666655322
Q ss_pred hcccHHHHhcccccccEeEEEecccccchhcccccCCCCceeEEEEecccccccccccCcCCCceeEeecccccCCC-Cc
Q 042574 653 LRETVEEAARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMITGLELPKSVILNNYKICRGE-EP 731 (929)
Q Consensus 653 ~~~~~~~l~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~L~~~~~~~~~-~~ 731 (929)
.... ..+..|. +|+.|.+.-.++..+.. ...-++...+.+.|+..++.... ..
T Consensus 235 ive~-ltFqgL~-Sl~nlklqrN~I~kL~D------------------------G~Fy~l~kme~l~L~~N~l~~vn~g~ 288 (873)
T KOG4194|consen 235 IVEG-LTFQGLP-SLQNLKLQRNDISKLDD------------------------GAFYGLEKMEHLNLETNRLQAVNEGW 288 (873)
T ss_pred eehh-hhhcCch-hhhhhhhhhcCcccccC------------------------cceeeecccceeecccchhhhhhccc
Confidence 1111 0111122 22222221111111100 00111222333444333322221 12
Q ss_pred ccCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchhhhcCCccEEEEecCcchhh
Q 042574 732 IVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDSIKE 811 (929)
Q Consensus 732 ~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~l~~ 811 (929)
+-.+..|+.|+++...--..-.+ .| .|.++|+.|+|++ +.++.+++ +.+..|..|++|.++. +.+..
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d---~W-------sftqkL~~LdLs~-N~i~~l~~-~sf~~L~~Le~LnLs~-Nsi~~ 355 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHID---SW-------SFTQKLKELDLSS-NRITRLDE-GSFRVLSQLEELNLSH-NSIDH 355 (873)
T ss_pred ccccchhhhhccchhhhheeecc---hh-------hhcccceeEeccc-cccccCCh-hHHHHHHHhhhhcccc-cchHH
Confidence 23345555555544321110000 01 2334666666666 45555543 3344455555555554 23333
Q ss_pred hhccCcchhh---------hh---hccccccccccCCCcceeecccccccccccccCccccCCCccEEEEeccCCCccc-
Q 042574 812 IIAVEDEETE---------KE---LATNTIINTVTLPRLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCPKLKRL- 878 (929)
Q Consensus 812 i~~~~~~~~~---------~~---~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~~L~~l- 878 (929)
+-...-.... .+ +-.........+|+|++|.+.+ .+|+.|+. ..+..+++||.|++.+.+ +.++
T Consensus 356 l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~k-rAfsgl~~LE~LdL~~Na-iaSIq 432 (873)
T KOG4194|consen 356 LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPK-RAFSGLEALEHLDLGDNA-IASIQ 432 (873)
T ss_pred HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecch-hhhccCcccceecCCCCc-ceeec
Confidence 2110000000 00 0000012233588888888887 46888876 345568888888888876 5555
Q ss_pred cCCCCccCCCCCCCCCCcceE-echhhhhhh
Q 042574 879 SLSLPLLDNGQPSPPPALEVI-EIEKELWES 908 (929)
Q Consensus 879 P~~l~~l~~~~~~~~~~L~~i-~~~~~~w~~ 908 (929)
|..+..+ ++.-..+.+.-.+ +|+-.|...
T Consensus 433 ~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~q 462 (873)
T KOG4194|consen 433 PNAFEPM-ELKELVMNSSSFLCDCQLKWLAQ 462 (873)
T ss_pred ccccccc-hhhhhhhcccceEEeccHHHHHH
Confidence 3333322 2222333444455 788777543
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=1.5e-20 Score=200.50 Aligned_cols=359 Identities=20% Similarity=0.262 Sum_probs=228.0
Q ss_pred cCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCc--ccCccc
Q 042574 488 KFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIE--VLPSSV 565 (929)
Q Consensus 488 ~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~--~lp~~i 565 (929)
.+|.+...+.+++-|.+...++..+|..+. .+.+|..|.+.+|. +..+...+ ..++.||.+++..|++. .+|..|
T Consensus 23 ~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~-~lqkLEHLs~~HN~-L~~vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~di 99 (1255)
T KOG0444|consen 23 RFPHDVEQMTQMTWLKLNRTKLEQVPEELS-RLQKLEHLSMAHNQ-LISVHGEL-SDLPRLRSVIVRDNNLKNSGIPTDI 99 (1255)
T ss_pred cCchhHHHhhheeEEEechhhhhhChHHHH-HHhhhhhhhhhhhh-hHhhhhhh-ccchhhHHHhhhccccccCCCCchh
Confidence 456665566677778777777777876654 67888888888887 44454444 67888888888888876 678888
Q ss_pred ccccccceeecccccccccCc-cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCccCCCCccCCCCCccE
Q 042574 566 SNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNLYK 643 (929)
Q Consensus 566 ~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 643 (929)
..+..|.+|+|+.| .++..| .+..-+++-+|+|++|+|..+|.. +.+|+.|-+|+|++|.+..+|+. +.+|.+|++
T Consensus 100 F~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ-~RRL~~Lqt 177 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQT 177 (1255)
T ss_pred cccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHH-HHHHhhhhh
Confidence 88888888999886 567777 788888888899998888888876 67888888889988888888887 588888888
Q ss_pred EEeecCCchhcccHHHHhcccccccEeEEEecc--cccchhcccccCCCCceeEEEEecccccccccccCcCCCceeEee
Q 042574 644 LKLSFGNEALRETVEEAARLSDGLDSFEGHFSE--LKDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMITGLELPKSVILN 721 (929)
Q Consensus 644 L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~~--l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~L~ 721 (929)
|.+++|. .....+..+.+++ +|+.|.++.+. +.+++.. ..++..+..+.++
T Consensus 178 L~Ls~NP-L~hfQLrQLPsmt-sL~vLhms~TqRTl~N~Pts-------------------------ld~l~NL~dvDlS 230 (1255)
T KOG0444|consen 178 LKLSNNP-LNHFQLRQLPSMT-SLSVLHMSNTQRTLDNIPTS-------------------------LDDLHNLRDVDLS 230 (1255)
T ss_pred hhcCCCh-hhHHHHhcCccch-hhhhhhcccccchhhcCCCc-------------------------hhhhhhhhhcccc
Confidence 8888664 2233344444445 55555544322 1111111 1111222222232
Q ss_pred cccccCCCCcccCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchhhhcCCccEE
Q 042574 722 NYKICRGEEPIVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVL 801 (929)
Q Consensus 722 ~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L 801 (929)
...+...+..+-.+++|..|.+++.. ++.+.-. .+... +|+.|+++. ++++.+|. .+-.|+.|+.|
T Consensus 231 ~N~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~---------~~~W~-~lEtLNlSr-NQLt~LP~--avcKL~kL~kL 296 (1255)
T KOG0444|consen 231 ENNLPIVPECLYKLRNLRRLNLSGNK-ITELNMT---------EGEWE-NLETLNLSR-NQLTVLPD--AVCKLTKLTKL 296 (1255)
T ss_pred ccCCCcchHHHhhhhhhheeccCcCc-eeeeecc---------HHHHh-hhhhhcccc-chhccchH--HHhhhHHHHHH
Confidence 22222222334445666666666543 2211100 12223 677777777 56666654 34456666666
Q ss_pred EEecCc-chhhhhccCcchhhhhhccccccccccCCCcceeecccccccccccccCccccCCCccEEEEeccCCCccccC
Q 042574 802 KVYGCD-SIKEIIAVEDEETEKELATNTIINTVTLPRLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCPKLKRLSL 880 (929)
Q Consensus 802 ~i~~c~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~~L~~lP~ 880 (929)
.+.+.. ..+.|+ .....+-.|+.+...+ .+|+-+|. +.+.|+.|+.|.+. |..|-.||.
T Consensus 297 y~n~NkL~FeGiP----------------SGIGKL~~Levf~aan-N~LElVPE--glcRC~kL~kL~L~-~NrLiTLPe 356 (1255)
T KOG0444|consen 297 YANNNKLTFEGIP----------------SGIGKLIQLEVFHAAN-NKLELVPE--GLCRCVKLQKLKLD-HNRLITLPE 356 (1255)
T ss_pred HhccCcccccCCc----------------cchhhhhhhHHHHhhc-cccccCch--hhhhhHHHHHhccc-ccceeechh
Confidence 555421 222222 1122466777777766 56877887 88889999999997 778999999
Q ss_pred CCCccCC---CCCCCCCCcceEechhhhhhhcccC
Q 042574 881 SLPLLDN---GQPSPPPALEVIEIEKELWESLEWD 912 (929)
Q Consensus 881 ~l~~l~~---~~~~~~~~L~~i~~~~~~w~~l~w~ 912 (929)
++..|.. ++...-|+|.--..+.+--.+++|=
T Consensus 357 aIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefY 391 (1255)
T KOG0444|consen 357 AIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFY 391 (1255)
T ss_pred hhhhcCCcceeeccCCcCccCCCCcchhhhcceee
Confidence 7655544 4555556665444444444555554
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=8.2e-18 Score=179.06 Aligned_cols=353 Identities=21% Similarity=0.226 Sum_probs=236.9
Q ss_pred cccccEEEcccCCCCcCCCCCCC--CCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccce
Q 042574 496 EENLERVSLMDNHIEEIPSNMSP--HCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRS 573 (929)
Q Consensus 496 ~~~l~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~ 573 (929)
.-+.+.|+.+++.++.+...-.. -.+..++|++++|. +..+...+|.++++|+.+++..|.++.+|...+...||+.
T Consensus 51 ~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~ 129 (873)
T KOG4194|consen 51 PCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEK 129 (873)
T ss_pred CCCceeeecCccccccccccccCCcCccceeeeeccccc-cccCcHHHHhcCCcceeeeeccchhhhcccccccccceeE
Confidence 34567788888877765321111 23567889999997 7777777789999999999999999999988888889999
Q ss_pred eecccccccccCc--cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCC
Q 042574 574 LLLRWCRRLKRVP--SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGN 650 (929)
Q Consensus 574 L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 650 (929)
|+|.+| .+..+. ++..++.|+.|||+.|.|+.+|.. +..=.++++|+|++|.++.+..+.|.++.+|.+|.++.|.
T Consensus 130 L~L~~N-~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr 208 (873)
T KOG4194|consen 130 LDLRHN-LISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR 208 (873)
T ss_pred Eeeecc-ccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence 999997 445554 589999999999999999988765 5555789999999999999999999999999999999664
Q ss_pred chhcccHHHHhcccccccEeEEEecccccchhcccccCCCCceeEEEEecccccccccccCcCCCceeEeecccccCCC-
Q 042574 651 EALRETVEEAARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMITGLELPKSVILNNYKICRGE- 729 (929)
Q Consensus 651 ~~~~~~~~~l~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~L~~~~~~~~~- 729 (929)
...-....+..|. +|+.|.++...+.-... . ...+++.++.+.+....+..-.
T Consensus 209 -ittLp~r~Fk~L~-~L~~LdLnrN~irive~----l--------------------tFqgL~Sl~nlklqrN~I~kL~D 262 (873)
T KOG4194|consen 209 -ITTLPQRSFKRLP-KLESLDLNRNRIRIVEG----L--------------------TFQGLPSLQNLKLQRNDISKLDD 262 (873)
T ss_pred -ccccCHHHhhhcc-hhhhhhccccceeeehh----h--------------------hhcCchhhhhhhhhhcCcccccC
Confidence 3444556677777 88888776655433211 0 0112233333444333333221
Q ss_pred CcccCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchhhhcCCccEEEEecCcch
Q 042574 730 EPIVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDSI 809 (929)
Q Consensus 730 ~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~l 809 (929)
..+-.+.+++.|++.... +..+. -.++-.+. .|+.|+++. +.+..+. .......++|+.|++++ +.+
T Consensus 263 G~Fy~l~kme~l~L~~N~-l~~vn--------~g~lfgLt-~L~~L~lS~-NaI~rih-~d~WsftqkL~~LdLs~-N~i 329 (873)
T KOG4194|consen 263 GAFYGLEKMEHLNLETNR-LQAVN--------EGWLFGLT-SLEQLDLSY-NAIQRIH-IDSWSFTQKLKELDLSS-NRI 329 (873)
T ss_pred cceeeecccceeecccch-hhhhh--------cccccccc-hhhhhccch-hhhheee-cchhhhcccceeEeccc-ccc
Confidence 234456778888776543 22211 11123455 899999998 5666653 23456778999999998 566
Q ss_pred hhhhccCcchhh--hh-------hccccccccccCCCcceeecccccccccccccCc---cccCCCccEEEEeccCCCcc
Q 042574 810 KEIIAVEDEETE--KE-------LATNTIINTVTLPRLKKLRFYFLREFKRFCSNNG---VLVCNSLQEIKVRGCPKLKR 877 (929)
Q Consensus 810 ~~i~~~~~~~~~--~~-------~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~---~~~~p~L~~L~I~~C~~L~~ 877 (929)
+++....-.... .+ ..+........+.+|++|+|.++. -+|+.+++ +..+|+|+.|.+.|. +|++
T Consensus 330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~--ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~ 406 (873)
T KOG4194|consen 330 TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE--LSWCIEDAAVAFNGLPSLRKLRLTGN-QLKS 406 (873)
T ss_pred ccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe--EEEEEecchhhhccchhhhheeecCc-eeee
Confidence 665432211000 00 111112334467889999998743 23444333 235899999999986 7999
Q ss_pred ccC----CCCccCCCCCCC
Q 042574 878 LSL----SLPLLDNGQPSP 892 (929)
Q Consensus 878 lP~----~l~~l~~~~~~~ 892 (929)
+|. +++.|+.++..+
T Consensus 407 I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 407 IPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred cchhhhccCcccceecCCC
Confidence 985 555555554433
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.63 E-value=8e-18 Score=171.61 Aligned_cols=370 Identities=18% Similarity=0.189 Sum_probs=210.8
Q ss_pred ccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcc
Q 042574 485 RLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSS 564 (929)
Q Consensus 485 ~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~ 564 (929)
++.++|+....+.++..+.+.+|++..+|+... .++.|+.|++..|- ++.+|+.+ +.+.+|..|++..|++..+| +
T Consensus 148 ~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~-L~tlP~~l-g~l~~L~~LyL~~Nki~~lP-e 223 (565)
T KOG0472|consen 148 QISSLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNL-LETLPPEL-GGLESLELLYLRRNKIRFLP-E 223 (565)
T ss_pred ccccCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhh-hhcCChhh-cchhhhHHHHhhhcccccCC-C
Confidence 345566665556666777777777777776655 37778888887775 77788776 77888888888888888888 6
Q ss_pred cccccccceeecccccccccCc-c-ccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCcc
Q 042574 565 VSNLTNLRSLLLRWCRRLKRVP-S-VAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLY 642 (929)
Q Consensus 565 i~~l~~L~~L~l~~~~~~~~~~-~-~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 642 (929)
|.++..|..|+++.| .++.+| . ..++.+|.+||++.|+++++|.++..+.+|.+||+++|.++.+|.. ++++ +|+
T Consensus 224 f~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~s-Lgnl-hL~ 300 (565)
T KOG0472|consen 224 FPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYS-LGNL-HLK 300 (565)
T ss_pred CCccHHHHHHHhccc-HHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcc-cccc-eee
Confidence 788888888888765 566777 3 4588999999999999999999999999999999999999999887 7888 888
Q ss_pred EEEeecCCchhcc------cH-HHHhcccccccEeEEEecccccc-hhcccccCCC------CceeEEEEecc---cccc
Q 042574 643 KLKLSFGNEALRE------TV-EEAARLSDGLDSFEGHFSELKDF-NIYVKSTDGR------GSKHYCLLLSA---YRMG 705 (929)
Q Consensus 643 ~L~l~~~~~~~~~------~~-~~l~~l~~~L~~L~~~~~~l~~l-~~~~~~~~~~------~l~~l~~~~~~---~~~~ 705 (929)
.|.+.+|...+.. +- +-+.-++.....-.++.+.-... .........+ ..+.+...... ....
T Consensus 301 ~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdE 380 (565)
T KOG0472|consen 301 FLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDE 380 (565)
T ss_pred ehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHH
Confidence 8888877533211 00 11111110011000100000000 0000000000 00001000000 0000
Q ss_pred cccccCcCCCceeEeecccccCCCCcccCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccc
Q 042574 706 AFMITGLELPKSVILNNYKICRGEEPIVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKN 785 (929)
Q Consensus 706 ~~~~~~~~~~~~l~L~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~ 785 (929)
.+..........+.++..+++.-+..+..+..+...-+.....+... ...+..|+ +|..|++++ +-+.+
T Consensus 381 Vfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv---------~~~l~~l~-kLt~L~L~N-N~Ln~ 449 (565)
T KOG0472|consen 381 VFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFV---------PLELSQLQ-KLTFLDLSN-NLLND 449 (565)
T ss_pred HHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccc---------hHHHHhhh-cceeeeccc-chhhh
Confidence 11111111122223332222222222222222222111111111100 22235677 999999999 56677
Q ss_pred cchhchhhhcCCccEEEEecCcchhhhhccCcchhhh----hh-ccccc---cccccCCCcceeecccccccccccccCc
Q 042574 786 LFSLWLLPALQNLEVLKVYGCDSIKEIIAVEDEETEK----EL-ATNTI---INTVTLPRLKKLRFYFLREFKRFCSNNG 857 (929)
Q Consensus 786 l~~~~~l~~L~~L~~L~i~~c~~l~~i~~~~~~~~~~----~~-~~~~~---~~~~~~p~L~~L~l~~~~~L~~i~~~~~ 857 (929)
+|. -+..+..|+.|+|+.. ....++..--...+- .. +.... .....+.+|..|++.+ ..++.+|. +
T Consensus 450 LP~--e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp--~ 523 (565)
T KOG0472|consen 450 LPE--EMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPP--I 523 (565)
T ss_pred cch--hhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC-CchhhCCh--h
Confidence 765 3456778999999974 454443221110000 00 11111 1233678889999977 46888887 7
Q ss_pred cccCCCccEEEEeccCCCccccC
Q 042574 858 VLVCNSLQEIKVRGCPKLKRLSL 880 (929)
Q Consensus 858 ~~~~p~L~~L~I~~C~~L~~lP~ 880 (929)
...|.+|++|.++|.| ++ .|.
T Consensus 524 LgnmtnL~hLeL~gNp-fr-~Pr 544 (565)
T KOG0472|consen 524 LGNMTNLRHLELDGNP-FR-QPR 544 (565)
T ss_pred hccccceeEEEecCCc-cC-CCH
Confidence 7788999999999987 44 554
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.52 E-value=5.2e-16 Score=174.55 Aligned_cols=111 Identities=19% Similarity=0.237 Sum_probs=64.0
Q ss_pred ccCcccccccccceeEEEEecCCCccccchhchhhhcCCccEEEEecCcchhhhhccCcchh---h--hhhccccc-ccc
Q 042574 759 EQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDSIKEIIAVEDEET---E--KELATNTI-INT 832 (929)
Q Consensus 759 ~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~l~~i~~~~~~~~---~--~~~~~~~~-~~~ 832 (929)
+.|.+-+.+|. +||.|+|++ +.+..+|. ..+.+|+.|++|++++ ++++.++..--... . ..++.... ...
T Consensus 373 d~c~p~l~~~~-hLKVLhLsy-NrL~~fpa-s~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~ 448 (1081)
T KOG0618|consen 373 DSCFPVLVNFK-HLKVLHLSY-NRLNSFPA-SKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSNQLLSFPEL 448 (1081)
T ss_pred ccchhhhcccc-ceeeeeecc-cccccCCH-HHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCCceeechhh
Confidence 44566667888 999999999 67777644 5678889999999998 57777752110000 0 00110000 122
Q ss_pred ccCCCcceeecccccccccccccCccccCCCccEEEEeccCCC
Q 042574 833 VTLPRLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCPKL 875 (929)
Q Consensus 833 ~~~p~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~~L 875 (929)
..+|.|+.++++. .+|..+... .....|.|++|+++|.+++
T Consensus 449 ~~l~qL~~lDlS~-N~L~~~~l~-~~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 449 AQLPQLKVLDLSC-NNLSEVTLP-EALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hhcCcceEEeccc-chhhhhhhh-hhCCCcccceeeccCCccc
Confidence 2456666666653 455555431 1122366777777776653
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=4.5e-13 Score=156.51 Aligned_cols=144 Identities=23% Similarity=0.283 Sum_probs=93.1
Q ss_pred cCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCccc
Q 042574 482 AGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVL 561 (929)
Q Consensus 482 ~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l 561 (929)
....++++|... ..+++.|++.+|++..+|. ..++|++|++++|. +..+|. ..++|+.|++++|.++.+
T Consensus 209 s~~~LtsLP~~l--~~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~-LtsLP~----lp~sL~~L~Ls~N~L~~L 277 (788)
T PRK15387 209 GESGLTTLPDCL--PAHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQ-LTSLPV----LPPGLLELSIFSNPLTHL 277 (788)
T ss_pred CCCCCCcCCcch--hcCCCEEEccCCcCCCCCC----CCCCCcEEEecCCc-cCcccC----cccccceeeccCCchhhh
Confidence 334556666632 3567778888887777764 24677888887775 556663 245777778888777777
Q ss_pred CcccccccccceeecccccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCc
Q 042574 562 PSSVSNLTNLRSLLLRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNL 641 (929)
Q Consensus 562 p~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 641 (929)
|.. ..+|+.|++++| .++.+|. .+++|+.|++++|.++.+|.. ..+|+.|++++|.++.+|. + ..+|
T Consensus 278 p~l---p~~L~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~--l--p~~L 344 (788)
T PRK15387 278 PAL---PSGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPT--L--PSGL 344 (788)
T ss_pred hhc---hhhcCEEECcCC-ccccccc--cccccceeECCCCccccCCCC---cccccccccccCccccccc--c--cccc
Confidence 652 245677777776 4455553 245677788877777777652 2356677777777776654 1 1467
Q ss_pred cEEEeecC
Q 042574 642 YKLKLSFG 649 (929)
Q Consensus 642 ~~L~l~~~ 649 (929)
+.|++++|
T Consensus 345 q~LdLS~N 352 (788)
T PRK15387 345 QELSVSDN 352 (788)
T ss_pred ceEecCCC
Confidence 77777755
No 14
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.46 E-value=4.5e-14 Score=168.56 Aligned_cols=325 Identities=22% Similarity=0.252 Sum_probs=192.9
Q ss_pred cccccCCCcccccccccEEEcccCC--CCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCccc
Q 042574 484 LRLLKFPGEQEWEENLERVSLMDNH--IEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVL 561 (929)
Q Consensus 484 ~~l~~~p~~~~~~~~l~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l 561 (929)
.....++..... +++++|-+..|. +..++..+|..++.|++|++++|....++|..+ +++-+||||+++++.++.+
T Consensus 533 ~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~L 610 (889)
T KOG4658|consen 533 NKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHL 610 (889)
T ss_pred cchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCcccc
Confidence 333444444333 379999999986 778888888899999999999999899999998 8999999999999999999
Q ss_pred CcccccccccceeecccccccccCcc-ccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccC-CCCccCCCC
Q 042574 562 PSSVSNLTNLRSLLLRWCRRLKRVPS-VAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKF-PTGILPRLR 639 (929)
Q Consensus 562 p~~i~~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~-~~~~l~~l~ 639 (929)
|.++++|..|.+|++..+..+..+|. ...+++|++|.+.......-...++.+.+|++|..-.+..... ....+..++
T Consensus 611 P~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~ 690 (889)
T KOG4658|consen 611 PSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMT 690 (889)
T ss_pred chHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhH
Confidence 99999999999999999888777785 5559999999998775332222234444444444333222211 000122333
Q ss_pred CccEEEeecC--CchhcccHHHHhcccccccEeEEEecccccchhcccccCCCCceeEEEEecccccccccccCcCCCce
Q 042574 640 NLYKLKLSFG--NEALRETVEEAARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMITGLELPKS 717 (929)
Q Consensus 640 ~L~~L~l~~~--~~~~~~~~~~l~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 717 (929)
.|..+...-. ..........+..+. +|+.|.+............ ..
T Consensus 691 ~L~~~~~~l~~~~~~~~~~~~~~~~l~-~L~~L~i~~~~~~e~~~~~------------------------------~~- 738 (889)
T KOG4658|consen 691 RLRSLLQSLSIEGCSKRTLISSLGSLG-NLEELSILDCGISEIVIEW------------------------------EE- 738 (889)
T ss_pred HHHHHhHhhhhcccccceeeccccccc-CcceEEEEcCCCchhhccc------------------------------cc-
Confidence 3332211100 011112223334444 5555544332211100000 00
Q ss_pred eEeecccccCCCCccc-CcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchhhhcC
Q 042574 718 VILNNYKICRGEEPIV-LPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQ 796 (929)
Q Consensus 718 l~L~~~~~~~~~~~~~-~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~ 796 (929)
..... .++++..+.+.+|.....+. | ..|+|+|+.|.+..|+.+++..+ ....+.
T Consensus 739 -----------~~~~~~~f~~l~~~~~~~~~~~r~l~-----~------~~f~~~L~~l~l~~~~~~e~~i~--~~k~~~ 794 (889)
T KOG4658|consen 739 -----------SLIVLLCFPNLSKVSILNCHMLRDLT-----W------LLFAPHLTSLSLVSCRLLEDIIP--KLKALL 794 (889)
T ss_pred -----------ccchhhhHHHHHHHHhhccccccccc-----h------hhccCcccEEEEecccccccCCC--HHHHhh
Confidence 00000 13456666666776554321 1 24556999999999999888544 334444
Q ss_pred CccEEEEecCcchhhhh-ccCcchhhhhhccccccccccCCCcceeecccccccccccccCccccCCCccEEEEecc-CC
Q 042574 797 NLEVLKVYGCDSIKEII-AVEDEETEKELATNTIINTVTLPRLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGC-PK 874 (929)
Q Consensus 797 ~L~~L~i~~c~~l~~i~-~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C-~~ 874 (929)
.++.+.+.. +.+..+. ..+..+... -......+|+|+.+.+..||++..+ |.+.++.|.+| ++
T Consensus 795 ~l~~~i~~f-~~~~~l~~~~~l~~l~~-----i~~~~l~~~~l~~~~ve~~p~l~~~---------P~~~~~~i~~~~~~ 859 (889)
T KOG4658|consen 795 ELKELILPF-NKLEGLRMLCSLGGLPQ-----LYWLPLSFLKLEELIVEECPKLGKL---------PLLSTLTIVGCEEK 859 (889)
T ss_pred hcccEEecc-cccccceeeecCCCCce-----eEecccCccchhheehhcCcccccC---------ccccccceeccccc
Confidence 444432222 2222221 000000000 0022335667777777777776655 56888899997 99
Q ss_pred CccccCC
Q 042574 875 LKRLSLS 881 (929)
Q Consensus 875 L~~lP~~ 881 (929)
+..+|.+
T Consensus 860 ~~~~~~~ 866 (889)
T KOG4658|consen 860 LKEYPDG 866 (889)
T ss_pred eeecCCc
Confidence 9999886
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.46 E-value=1.9e-16 Score=161.76 Aligned_cols=187 Identities=22% Similarity=0.301 Sum_probs=112.6
Q ss_pred ccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcc
Q 042574 485 RLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSS 564 (929)
Q Consensus 485 ~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~ 564 (929)
.+.++|..+.....+.+++.+.|++.++|..+. ...+++.+++++|. ...+|+++ +.+..|..|+..+|++.++|..
T Consensus 79 ~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~-s~~~l~~l~~s~n~-~~el~~~i-~~~~~l~dl~~~~N~i~slp~~ 155 (565)
T KOG0472|consen 79 KLSQLPAAIGELEALKSLNVSHNKLSELPEQIG-SLISLVKLDCSSNE-LKELPDSI-GRLLDLEDLDATNNQISSLPED 155 (565)
T ss_pred hhhhCCHHHHHHHHHHHhhcccchHhhccHHHh-hhhhhhhhhccccc-eeecCchH-HHHhhhhhhhccccccccCchH
Confidence 344555555555566666667776666666554 55666667777665 55566665 4566667777777777777777
Q ss_pred cccccccceeecccccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEE
Q 042574 565 VSNLTNLRSLLLRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKL 644 (929)
Q Consensus 565 i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 644 (929)
++++..|..|++.+|......|..-+++.|++||...|-++.+|+.++.|.+|..|++..|++..+|. |+.+..|.+|
T Consensus 156 ~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPe--f~gcs~L~El 233 (565)
T KOG0472|consen 156 MVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPE--FPGCSLLKEL 233 (565)
T ss_pred HHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCC--CCccHHHHHH
Confidence 77777777777776543333334444666777777666667777777777777777777777666662 5666666666
Q ss_pred EeecCCchhcccHHHHhcccccccEeEEEecccc
Q 042574 645 KLSFGNEALRETVEEAARLSDGLDSFEGHFSELK 678 (929)
Q Consensus 645 ~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~~l~ 678 (929)
++..|. ......+....+. ++..|++.-..+.
T Consensus 234 h~g~N~-i~~lpae~~~~L~-~l~vLDLRdNklk 265 (565)
T KOG0472|consen 234 HVGENQ-IEMLPAEHLKHLN-SLLVLDLRDNKLK 265 (565)
T ss_pred HhcccH-HHhhHHHHhcccc-cceeeeccccccc
Confidence 665432 1111223333444 5555555444333
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=1.6e-15 Score=137.14 Aligned_cols=149 Identities=24% Similarity=0.388 Sum_probs=104.5
Q ss_pred ccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceeec
Q 042574 497 ENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLL 576 (929)
Q Consensus 497 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l 576 (929)
.++++|.++.|++..+|+.+. .+.+|++|++++|. ++++|.++ +.++.||.|++..|.+..+|..++.++.|+.|++
T Consensus 33 s~ITrLtLSHNKl~~vppnia-~l~nlevln~~nnq-ie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIA-ELKNLEVLNLSNNQ-IEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCceeecCCcHH-Hhhhhhhhhcccch-hhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 466777777777777776664 66777777777775 67777766 6677777777777777777777777777777777
Q ss_pred ccccccc-cCc-cccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecC
Q 042574 577 RWCRRLK-RVP-SVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFG 649 (929)
Q Consensus 577 ~~~~~~~-~~~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 649 (929)
++|+... .+| .+..+..|+.|.++.|.++-+|+.++++++|+.|.+..|.+-.+|.. ++.++.|++|++.+|
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGN 183 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccc
Confidence 7765332 455 56667777777777777777777777777777777777776666655 467777777777654
No 17
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.42 E-value=1.2e-11 Score=155.50 Aligned_cols=289 Identities=16% Similarity=0.206 Sum_probs=178.4
Q ss_pred ccccccchHHHHHHHHHHhcC-CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECC-CCCHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMG-DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQTEIAT 216 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~ 216 (929)
..++-| + +|.+.|.. ...+++.|+|++|.||||++.++.... + .++|+++.. +.+...+...++.
T Consensus 14 ~~~~~R--~----rl~~~l~~~~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 14 HNTVVR--E----RLLAKLSGANNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred cccCcc--h----HHHHHHhcccCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHH
Confidence 456666 3 34444433 357899999999999999999987532 2 589999864 4566677777777
Q ss_pred HhcCCCCCC-------------ccHHHHHHHHHHHHHh-cCcEEEEEecCCCcCC--c-cccccCCCCCCCCcEEEEEeC
Q 042574 217 ALKQSLPEN-------------EDKVRRAGRLSEMLKA-KAKFVLILDDMWEAFP--L-EEVGIPEPSEENGCKLVITTR 279 (929)
Q Consensus 217 ~l~~~~~~~-------------~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~~--~-~~l~~~~~~~~~gs~ilvTtR 279 (929)
.++...... .+.......+...+.. +++++|||||+....+ . +.+...+.....+.++|||||
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR 160 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSR 160 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 774221110 1112233344444433 6799999999965321 1 122222222345678989999
Q ss_pred cccccc--cCC--cceEecc----cCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHHhhhcCCCC
Q 042574 280 SLGVSR--SMD--CKEIGVE----LLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVASCMRGVDE 351 (929)
Q Consensus 280 ~~~v~~--~~~--~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~ 351 (929)
...-.. ... .....+. +|+.+|+.++|....+... ..+.+..|.+.|+|.|+++..++..+.....
T Consensus 161 ~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~------~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~ 234 (903)
T PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI------EAAESSRLCDDVEGWATALQLIALSARQNNS 234 (903)
T ss_pred CCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC------CHHHHHHHHHHhCChHHHHHHHHHHHhhCCC
Confidence 843211 111 1114444 9999999999987665432 2456788999999999999998877754321
Q ss_pred hhHHHHHHHHHhhhhccCCCCchhhhhhHHh-hcccCCChhhhhHhhhhccCCCCCccCHHHHHHHHHHcCcccchhcHH
Q 042574 352 IHEWRNALNELRGLVRSRNGVNADVLGRLEF-SYHRLKDDKVQQCFLYCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQ 430 (929)
Q Consensus 352 ~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~-sy~~L~~~~~k~cfl~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~ 430 (929)
.. ......+.. .....+...+.- .++.|| +..+..++..|+++ . ++.. +.. .+..
T Consensus 235 ~~--~~~~~~~~~------~~~~~~~~~l~~~v~~~l~-~~~~~~l~~~a~~~-~--~~~~-l~~-----~l~~------ 290 (903)
T PRK04841 235 SL--HDSARRLAG------INASHLSDYLVEEVLDNVD-LETRHFLLRCSVLR-S--MNDA-LIV-----RVTG------ 290 (903)
T ss_pred ch--hhhhHhhcC------CCchhHHHHHHHHHHhcCC-HHHHHHHHHhcccc-c--CCHH-HHH-----HHcC------
Confidence 10 011111100 011234444333 378999 89999999999986 3 3322 211 1111
Q ss_pred HHHHhHHHHHHHHHHcccccc-cc-CCCeEEechHHHHHHHHHh
Q 042574 431 AKYDRGHTILNRLVNCCLLER-AE-DGGCVKMHDLIRDMALRIK 472 (929)
Q Consensus 431 ~~~~~~~~~l~~L~~~~ll~~-~~-~~~~~~mHdlv~~~a~~~~ 472 (929)
.+.+...+++|.+.+++.. .+ ++..|.+|++++++.....
T Consensus 291 --~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 --EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred --CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 1345678999999999753 33 2357899999999998765
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.40 E-value=2e-12 Score=151.21 Aligned_cols=254 Identities=20% Similarity=0.242 Sum_probs=174.7
Q ss_pred ccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceeeccc
Q 042574 499 LERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLRW 578 (929)
Q Consensus 499 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~ 578 (929)
-..|+++.+.+..+|..+. ++|+.|.+.+|. ++.+|. .+++|++|++++|.++.+|.. .++|+.|++++
T Consensus 203 ~~~LdLs~~~LtsLP~~l~---~~L~~L~L~~N~-Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP---AHITTLVIPDNN-LTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCCcCCcchh---cCCCEEEccCCc-CCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccC
Confidence 4568999999999988664 479999999987 777874 368999999999999999853 46889999998
Q ss_pred ccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCCchhcccHH
Q 042574 579 CRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGNEALRETVE 658 (929)
Q Consensus 579 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 658 (929)
|. +..+|. .+.+|+.|++++|.++.+|.. +++|+.|++++|.++.+|.. ..+|+.|++++|...
T Consensus 272 N~-L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l----p~~L~~L~Ls~N~L~------ 335 (788)
T PRK15387 272 NP-LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL----PSELCKLWAYNNQLT------ 335 (788)
T ss_pred Cc-hhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC----cccccccccccCccc------
Confidence 74 556664 236788999999999999863 47899999999999887652 235677777755311
Q ss_pred HHhcccccccEeEEEecccccchhcccccCCCCceeEEEEecccccccccccCcCCCceeEeecccccCCCCcccCcccc
Q 042574 659 EAARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMITGLELPKSVILNNYKICRGEEPIVLPEDV 738 (929)
Q Consensus 659 ~l~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~L~~~~~~~~~~~~~~~~~L 738 (929)
.+..+..+|+.|.++.+.+..++ ..+++|
T Consensus 336 ~LP~lp~~Lq~LdLS~N~Ls~LP---------------------------------------------------~lp~~L 364 (788)
T PRK15387 336 SLPTLPSGLQELSVSDNQLASLP---------------------------------------------------TLPSEL 364 (788)
T ss_pred cccccccccceEecCCCccCCCC---------------------------------------------------CCCccc
Confidence 01111113444443322221110 012345
Q ss_pred cceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchhhhcCCccEEEEecCcchhhhhccCcc
Q 042574 739 QFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDSIKEIIAVEDE 818 (929)
Q Consensus 739 ~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~l~~i~~~~~~ 818 (929)
+.|.+.++. +..+ ..++.+|+.|+++++ .++.+|.. .++|+.|+++++ .++.++.
T Consensus 365 ~~L~Ls~N~-L~~L-------------P~l~~~L~~LdLs~N-~Lt~LP~l-----~s~L~~LdLS~N-~LssIP~---- 419 (788)
T PRK15387 365 YKLWAYNNR-LTSL-------------PALPSGLKELIVSGN-RLTSLPVL-----PSELKELMVSGN-RLTSLPM---- 419 (788)
T ss_pred ceehhhccc-cccC-------------cccccccceEEecCC-cccCCCCc-----ccCCCEEEccCC-cCCCCCc----
Confidence 555554432 2211 112238999999985 67766642 258999999996 4665541
Q ss_pred hhhhhhccccccccccCCCcceeecccccccccccccCccccCCCccEEEEeccC
Q 042574 819 ETEKELATNTIINTVTLPRLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCP 873 (929)
Q Consensus 819 ~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~ 873 (929)
.+.+|+.|+++++ +++.+|. ....+++|+.|++++++
T Consensus 420 ---------------l~~~L~~L~Ls~N-qLt~LP~--sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 420 ---------------LPSGLLSLSVYRN-QLTRLPE--SLIHLSSETTVNLEGNP 456 (788)
T ss_pred ---------------chhhhhhhhhccC-cccccCh--HHhhccCCCeEECCCCC
Confidence 2457889999884 5888886 56678999999999987
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.39 E-value=1.1e-14 Score=131.69 Aligned_cols=150 Identities=31% Similarity=0.406 Sum_probs=132.6
Q ss_pred cccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCc--cc
Q 042574 484 LRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIE--VL 561 (929)
Q Consensus 484 ~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~--~l 561 (929)
..+..+|..+....+++.|++++|+++++|..+. .+++|+.|++.-|. +..+|..| +.++.|++|||++|++. .+
T Consensus 43 NKl~~vppnia~l~nlevln~~nnqie~lp~~is-sl~klr~lnvgmnr-l~~lprgf-gs~p~levldltynnl~e~~l 119 (264)
T KOG0617|consen 43 NKLTVVPPNIAELKNLEVLNLSNNQIEELPTSIS-SLPKLRILNVGMNR-LNILPRGF-GSFPALEVLDLTYNNLNENSL 119 (264)
T ss_pred CceeecCCcHHHhhhhhhhhcccchhhhcChhhh-hchhhhheecchhh-hhcCcccc-CCCchhhhhhccccccccccC
Confidence 3456677777778899999999999999998875 89999999999887 77788886 99999999999999987 78
Q ss_pred CcccccccccceeecccccccccCc-cccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCC
Q 042574 562 PSSVSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRL 638 (929)
Q Consensus 562 p~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l 638 (929)
|..+..+..|+-|.++.|.. ..+| .++++++||.|.++.|.+-++|..++.++.|+.|.+.+|.++-+|+. ++++
T Consensus 120 pgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppe-l~~l 195 (264)
T KOG0617|consen 120 PGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPE-LANL 195 (264)
T ss_pred CcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChh-hhhh
Confidence 99999999999999999754 5555 89999999999999999999999999999999999999999999886 3443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.37 E-value=1.4e-12 Score=153.53 Aligned_cols=134 Identities=23% Similarity=0.414 Sum_probs=73.4
Q ss_pred ccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceeeccc
Q 042574 499 LERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLRW 578 (929)
Q Consensus 499 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~ 578 (929)
...|.+.++++..+|..+. ++|+.|++++|. +..+|..++ .+|++|++++|.++.+|..+. .+|+.|++++
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip---~~L~~L~Ls~N~-LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP---EQITTLILDNNE-LKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcCcCCcccc---cCCcEEEecCCC-CCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 4455666666665554332 356666666664 555665442 356666666666666665432 3566666666
Q ss_pred ccccccCc-cccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecC
Q 042574 579 CRRLKRVP-SVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFG 649 (929)
Q Consensus 579 ~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 649 (929)
|. +..+| .+. .+|+.|++++|.++.+|..+. ++|++|++++|+++.+|... . ++|+.|++++|
T Consensus 251 N~-L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l-p--~sL~~L~Ls~N 314 (754)
T PRK15370 251 NR-ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHL-P--SGITHLNVQSN 314 (754)
T ss_pred Cc-cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccc-h--hhHHHHHhcCC
Confidence 53 33444 232 356666666666666665443 35666666666666555431 1 24555555443
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.30 E-value=1.1e-11 Score=146.13 Aligned_cols=149 Identities=24% Similarity=0.378 Sum_probs=120.0
Q ss_pred cCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCccc
Q 042574 482 AGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVL 561 (929)
Q Consensus 482 ~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l 561 (929)
.+..++++|.. .+++++.|++++|.+..+|...+ ++|++|++++|. +..+|..+ ..+|+.|+|++|.+..+
T Consensus 186 ~~~~LtsLP~~--Ip~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~-LtsLP~~l---~~~L~~L~Ls~N~L~~L 256 (754)
T PRK15370 186 KILGLTTIPAC--IPEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQ-LTSIPATL---PDTIQEMELSINRITEL 256 (754)
T ss_pred CCCCcCcCCcc--cccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCc-cccCChhh---hccccEEECcCCccCcC
Confidence 44566778764 35789999999999999987654 589999999997 77888765 35799999999999999
Q ss_pred CcccccccccceeecccccccccCc-cccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCC
Q 042574 562 PSSVSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRN 640 (929)
Q Consensus 562 p~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 640 (929)
|..+. .+|++|++++| .+..+| .+. .+|++|++++|.++.+|..+. ++|++|++++|.++.+|... .++
T Consensus 257 P~~l~--s~L~~L~Ls~N-~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l---~~s 326 (754)
T PRK15370 257 PERLP--SALQSLDLFHN-KISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTALPETL---PPG 326 (754)
T ss_pred ChhHh--CCCCEEECcCC-ccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCccccCCccc---ccc
Confidence 98765 58999999976 556677 453 589999999999999987654 57999999999998887643 257
Q ss_pred ccEEEeecC
Q 042574 641 LYKLKLSFG 649 (929)
Q Consensus 641 L~~L~l~~~ 649 (929)
|+.|++++|
T Consensus 327 L~~L~Ls~N 335 (754)
T PRK15370 327 LKTLEAGEN 335 (754)
T ss_pred ceeccccCC
Confidence 888888765
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.25 E-value=8e-13 Score=149.33 Aligned_cols=144 Identities=31% Similarity=0.399 Sum_probs=106.0
Q ss_pred EEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceeecccccc
Q 042574 502 VSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLRWCRR 581 (929)
Q Consensus 502 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~ 581 (929)
+++++..++.||..++.+- .+..|++..|. +-..|-.+..+..+|+.|++++|.+..+|..|..+++|+.|+++.| .
T Consensus 3 vd~s~~~l~~ip~~i~~~~-~~~~ln~~~N~-~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~ 79 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNNE-ALQILNLRRNS-LLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-Y 79 (1081)
T ss_pred cccccccCcccchhhccHH-HHHhhhccccc-cccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchh-h
Confidence 4455666666776665333 37777777775 4444555555566688888888888888888888888888888875 6
Q ss_pred cccCc-cccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecC
Q 042574 582 LKRVP-SVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFG 649 (929)
Q Consensus 582 ~~~~~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 649 (929)
+..+| +++++.+|++|+|.+|.+..+|.++..+++|++|+++.|.+..+|.- +..++.+..+..++|
T Consensus 80 i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~-i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 80 IRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLV-IEVLTAEEELAASNN 147 (1081)
T ss_pred HhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccCCCchh-HHhhhHHHHHhhhcc
Confidence 67777 68888888888888888888888888888888888888888777764 466666666666655
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.21 E-value=7.5e-13 Score=135.69 Aligned_cols=125 Identities=26% Similarity=0.382 Sum_probs=73.6
Q ss_pred cEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCccc-CcccccccccceeecccccccccCc--cccccCCCCEEEcc
Q 042574 524 STLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVL-PSSVSNLTNLRSLLLRWCRRLKRVP--SVAKLLALQYLDLE 600 (929)
Q Consensus 524 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~ 600 (929)
..|.|..|. ++.+|+..|+.+++||.|||++|.|+.+ |..+.++..|-.|-+.+++.++.+| .+++|..|+.|.+.
T Consensus 70 veirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 70 VEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred eEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 344444443 5555555555555555555555555544 4555555555555555545555555 36666666666666
Q ss_pred CCCCcccccc-ccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecC
Q 042574 601 RTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFG 649 (929)
Q Consensus 601 ~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 649 (929)
-|.+..++.. +..|++|..|.+..|.+..++.+.+..+..++++++.-|
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcC
Confidence 6666655444 666677777777776666666666666666666665543
No 24
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.18 E-value=2.4e-09 Score=121.51 Aligned_cols=286 Identities=19% Similarity=0.262 Sum_probs=185.3
Q ss_pred HHHHHHhcCC-CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCC-CCHHHHHHHHHHHhcCCCCCCccH
Q 042574 151 ERIWEDLMGD-KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LDLIKLQTEIATALKQSLPENEDK 228 (929)
Q Consensus 151 ~~l~~~l~~~-~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~ 228 (929)
.++++.|.+. +.+.+.|..|+|.|||||+.+..... ..-..+.|.+.+.. .++..+...++..++.-.+...+.
T Consensus 25 ~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~----~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~ 100 (894)
T COG2909 25 PRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELA----ADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDE 100 (894)
T ss_pred HHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhc----CcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHH
Confidence 4566666554 68999999999999999999998733 34456999998764 578888888888887544332222
Q ss_pred -------------HHHHHHHHHHHH-hcCcEEEEEecCCCc--CCc-cccccCCCCCCCCcEEEEEeCccccccc--CCc
Q 042574 229 -------------VRRAGRLSEMLK-AKAKFVLILDDMWEA--FPL-EEVGIPEPSEENGCKLVITTRSLGVSRS--MDC 289 (929)
Q Consensus 229 -------------~~~~~~l~~~l~-~~~~~LlvlDdv~~~--~~~-~~l~~~~~~~~~gs~ilvTtR~~~v~~~--~~~ 289 (929)
......+...+. -.++..|||||..-. ..+ +.+...+.....+-.+|||||+..-... +..
T Consensus 101 a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRl 180 (894)
T COG2909 101 AQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRL 180 (894)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceee
Confidence 223334444432 246899999997532 122 2222223333467899999998753221 111
Q ss_pred ce--Eec----ccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHHhhhcCCCChhHHHHHHHHHh
Q 042574 290 KE--IGV----ELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVASCMRGVDEIHEWRNALNELR 363 (929)
Q Consensus 290 ~~--~~l----~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~l~~l~ 363 (929)
.. +++ =.++.+|+-++|....+... .+.-++.+.+...|-+-|+..++-.++.+.+...--..++
T Consensus 181 r~~llEi~~~~Lrf~~eE~~~fl~~~~~l~L------d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~Ls--- 251 (894)
T COG2909 181 RDELLEIGSEELRFDTEEAAAFLNDRGSLPL------DAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLS--- 251 (894)
T ss_pred hhhHHhcChHhhcCChHHHHHHHHHcCCCCC------ChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhcc---
Confidence 11 333 24888999999987654432 2456788999999999999999988884333322211111
Q ss_pred hhhccCCCCchhhhh-hHHhhcccCCChhhhhHhhhhccCCCCCccCHHHHHHHHHHcCcccchhcHHHHHHhHHHHHHH
Q 042574 364 GLVRSRNGVNADVLG-RLEFSYHRLKDDKVQQCFLYCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQAKYDRGHTILNR 442 (929)
Q Consensus 364 ~~~~~~~~~~~~~~~-~l~~sy~~L~~~~~k~cfl~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~ 442 (929)
+....+.. ...--++.|| +.+|..++-||+++.- -+.|+.. -.-++.+..++++
T Consensus 252 -------G~~~~l~dYL~eeVld~Lp-~~l~~FLl~~svl~~f----~~eL~~~-------------Ltg~~ng~amLe~ 306 (894)
T COG2909 252 -------GAASHLSDYLVEEVLDRLP-PELRDFLLQTSVLSRF----NDELCNA-------------LTGEENGQAMLEE 306 (894)
T ss_pred -------chHHHHHHHHHHHHHhcCC-HHHHHHHHHHHhHHHh----hHHHHHH-------------HhcCCcHHHHHHH
Confidence 11111211 2334567899 8999999999988542 1222222 1223567788999
Q ss_pred HHHccccccc--cCCCeEEechHHHHHHHHHhcc
Q 042574 443 LVNCCLLERA--EDGGCVKMHDLIRDMALRIKSK 474 (929)
Q Consensus 443 L~~~~ll~~~--~~~~~~~mHdlv~~~a~~~~~~ 474 (929)
|.+++|+-.. +.+..|+.|.+..||-......
T Consensus 307 L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 307 LERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 9999998643 3358999999999998876654
No 25
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.18 E-value=3.6e-09 Score=112.46 Aligned_cols=182 Identities=17% Similarity=0.228 Sum_probs=113.9
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHH---
Q 042574 160 DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLS--- 236 (929)
Q Consensus 160 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~--- 236 (929)
...+++.|+|++|+||||+++.+++... . ... .+.|+ +....+..+++..|+..++.+... .+.......+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~-~-~~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l 115 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLD-Q-ERV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFL 115 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcC-C-CCe-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHH
Confidence 3456899999999999999999998863 1 111 22333 334457778889999988775432 22222222332
Q ss_pred -HHHHhcCcEEEEEecCCCcC--Ccccccc---CCCCCCCCcEEEEEeCcccc---cc-c---CC---cceEecccCCHH
Q 042574 237 -EMLKAKAKFVLILDDMWEAF--PLEEVGI---PEPSEENGCKLVITTRSLGV---SR-S---MD---CKEIGVELLSQE 300 (929)
Q Consensus 237 -~~l~~~~~~LlvlDdv~~~~--~~~~l~~---~~~~~~~gs~ilvTtR~~~v---~~-~---~~---~~~~~l~~L~~~ 300 (929)
.....+++.++|+||++... .++.+.. ..........|++|....-. .. . .. ...+.+++++.+
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 22335788999999998743 3333321 11112223355666553211 10 0 11 112789999999
Q ss_pred HHHHHHHhhhcccCCC-CCcchHHHHHHHHHhcCCccHHHHHHHhhh
Q 042574 301 EALNLFLDKVRISTSQ-IPNLDKEIINSVVEECDGLPLAIVTVASCM 346 (929)
Q Consensus 301 ~~~~Lf~~~~~~~~~~-~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 346 (929)
|..+++...+...... ...-.++..+.|++.++|.|..|..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999998776543211 122346789999999999999999888775
No 26
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.13 E-value=1e-08 Score=115.37 Aligned_cols=290 Identities=16% Similarity=0.153 Sum_probs=163.6
Q ss_pred ccccccchHHHHHHHHHHhc----CCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLM----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEI 214 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 214 (929)
..++|| +.+++++...+. +.....+.|+|++|+|||++++.++++.... ...-..+++.+....+...++..|
T Consensus 30 ~~l~~R--e~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~-~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 30 ENLPHR--EEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEI-AVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred CCCCCH--HHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEECCcCCCHHHHHHHH
Confidence 578999 677777777762 3445678999999999999999999987432 223346777777777888889999
Q ss_pred HHHhcCC-CC-CCccHHHHHHHHHHHHHh-cCcEEEEEecCCCcC---C---ccccccCCCCCCCCc--EEEEEeCcccc
Q 042574 215 ATALKQS-LP-ENEDKVRRAGRLSEMLKA-KAKFVLILDDMWEAF---P---LEEVGIPEPSEENGC--KLVITTRSLGV 283 (929)
Q Consensus 215 ~~~l~~~-~~-~~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~---~---~~~l~~~~~~~~~gs--~ilvTtR~~~v 283 (929)
+.++... .+ ...+.......+.+.+.+ +++.+||||+++... . +..+..... ...++ .||.++....+
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~vI~i~~~~~~ 185 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGVIGISSDLTF 185 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEEEEEECCcch
Confidence 9998752 21 112233444455555542 456899999997632 1 222221111 11232 35666665433
Q ss_pred cc--------cCCcceEecccCCHHHHHHHHHhhhccc--CCCCC-cchHHHHHHHHHhcCCccHHHHHHHhhh--c--C
Q 042574 284 SR--------SMDCKEIGVELLSQEEALNLFLDKVRIS--TSQIP-NLDKEIINSVVEECDGLPLAIVTVASCM--R--G 348 (929)
Q Consensus 284 ~~--------~~~~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~-~~~~~~~~~i~~~c~g~Plai~~~~~~L--~--~ 348 (929)
.. ..+...+.+++++.++..+++..++... ..... ..++.+++......|..+.|+..+-.+. . .
T Consensus 186 ~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 186 LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 22 2222338999999999999998876432 11112 2223333333333456777777664322 1 1
Q ss_pred -C--CChhHHHHHHHHHhhhhccCCCCchhhhhhHHhhcccCCChhhhhHhhhhccC-C-CCCccCHHHHHHH--HHHc-
Q 042574 349 -V--DEIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDDKVQQCFLYCALY-P-EDFAIPKEELIDY--WIAE- 420 (929)
Q Consensus 349 -~--~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~a~f-p-~~~~i~~~~li~~--w~a~- 420 (929)
. -+.+....+++.+. .....-.+..|| .+.|..+..++.. . ....+...++... .+++
T Consensus 266 ~~~~I~~~~v~~a~~~~~-------------~~~~~~~~~~L~-~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKSE-------------IVHLSEVLRTLP-LHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred CCCCcCHHHHHHHHHHHH-------------HHHHHHHHhcCC-HHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 1 13445555555431 122344677888 4444333333322 1 1123455554432 1221
Q ss_pred -CcccchhcHHHHHHhHHHHHHHHHHccccccc
Q 042574 421 -GFIEEVKDVQAKYDRGHTILNRLVNCCLLERA 452 (929)
Q Consensus 421 -g~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 452 (929)
|.-. ........|+++|...|++...
T Consensus 332 ~~~~~------~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 332 LGYEP------RTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCCCc------CcHHHHHHHHHHHHhcCCeEEE
Confidence 2111 0124567789999999999864
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.09 E-value=2.9e-08 Score=110.56 Aligned_cols=294 Identities=16% Similarity=0.179 Sum_probs=165.2
Q ss_pred ccccccchHHHHHHHHHHhc----CCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCC---cEEEEEEECCCCCHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLM----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKF---NVVIWVTVSQPLDLIKLQ 211 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~~~~~~~~~ 211 (929)
..++|| +.++++|..++. +.....+.|+|++|+|||++++.++++........ -..+|+.+....+...++
T Consensus 15 ~~l~gR--e~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 15 DRIVHR--DEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCc--HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 578999 677777777764 34456899999999999999999999874322211 246778877777788899
Q ss_pred HHHHHHhc---CCCCC-CccHHHHHHHHHHHHH-hcCcEEEEEecCCCcC-C----ccccccC--CCC-CCCCcEEEEEe
Q 042574 212 TEIATALK---QSLPE-NEDKVRRAGRLSEMLK-AKAKFVLILDDMWEAF-P----LEEVGIP--EPS-EENGCKLVITT 278 (929)
Q Consensus 212 ~~i~~~l~---~~~~~-~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~-~----~~~l~~~--~~~-~~~gs~ilvTt 278 (929)
..|+.++. ...+. ..+..+....+.+.+. .+++++||||+++... . +..+... ... .+....+|++|
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 99999883 32221 1123333444555553 3568899999998641 1 1122111 011 11233445555
Q ss_pred Ccccc--------cccCCcceEecccCCHHHHHHHHHhhhccc--CCCCCcchHHHHHHHHHhcCCccHH-HHHHHhhh-
Q 042574 279 RSLGV--------SRSMDCKEIGVELLSQEEALNLFLDKVRIS--TSQIPNLDKEIINSVVEECDGLPLA-IVTVASCM- 346 (929)
Q Consensus 279 R~~~v--------~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~g~Pla-i~~~~~~L- 346 (929)
..... ...+....+.+++.+.++..+++..++... .....++..+.+..++....|.|-. +.++-.+.
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 43322 112222238899999999999999876421 1112233334455567777788743 33322211
Q ss_pred ---cC---CCChhHHHHHHHHHhhhhccCCCCchhhhhhHHhhcccCCChhhhhHhhhhccC--CCCCccCHHHHHHHHH
Q 042574 347 ---RG---VDEIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDDKVQQCFLYCALY--PEDFAIPKEELIDYWI 418 (929)
Q Consensus 347 ---~~---~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~a~f--p~~~~i~~~~li~~w~ 418 (929)
.. .-+.+....+.+.+. .....-++..|| .+.+..+..++.. ..+..+...++...+-
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~~-------------~~~~~~~i~~l~-~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKIE-------------KDRLLELIRGLP-THSKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 11 122334444443331 122344566787 5555444443321 1334466666655331
Q ss_pred --HcCcccchhcHHHHHHhHHHHHHHHHHccccccc
Q 042574 419 --AEGFIEEVKDVQAKYDRGHTILNRLVNCCLLERA 452 (929)
Q Consensus 419 --a~g~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 452 (929)
++. +. -....+.+...++++|...|++...
T Consensus 319 ~~~~~-~~---~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 319 EVCED-IG---VDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHHHh-cC---CCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 111 10 0112246778889999999999875
No 28
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.07 E-value=3.3e-09 Score=114.84 Aligned_cols=274 Identities=16% Similarity=0.163 Sum_probs=143.6
Q ss_pred ccccccchHHHHHHHHHHhc-----CCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLM-----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTE 213 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~-----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 213 (929)
.+|+|+ +..++.+..++. ......+.++|++|+|||+||+.+++... ..+ ..+..+.......+ ..
T Consensus 4 ~~~iG~--~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~---~~~---~~~~~~~~~~~~~l-~~ 74 (305)
T TIGR00635 4 AEFIGQ--EKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMG---VNL---KITSGPALEKPGDL-AA 74 (305)
T ss_pred HHHcCH--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhC---CCE---EEeccchhcCchhH-HH
Confidence 468998 566666766664 23356688999999999999999999862 122 12221111111111 22
Q ss_pred HHHHhcCCCC---CC-cc-HHHHHHHHHHHHHhcCcEEEEEecCCCcCCccccccCCCCCCCCcEEEEEeCcccccccCC
Q 042574 214 IATALKQSLP---EN-ED-KVRRAGRLSEMLKAKAKFVLILDDMWEAFPLEEVGIPEPSEENGCKLVITTRSLGVSRSMD 288 (929)
Q Consensus 214 i~~~l~~~~~---~~-~~-~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~~ 288 (929)
.+..++...- ++ .. .......+...+ .+.+..+|+|+..+...+.. +.+ +.+-|..||+...+.....
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~-~~~~~~~v~~~~~~~~~~~~---~~~---~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPAVEELLYPAM-EDFRLDIVIGKGPSARSVRL---DLP---PFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHHHHHHhhHHH-hhhheeeeeccCccccceee---cCC---CeEEEEecCCccccCHHHH
Confidence 2222221100 00 00 001111222222 34455666766554443321 122 2556677888755443211
Q ss_pred --cce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHHhhhcCCCChhHHHHHHHHHhhh
Q 042574 289 --CKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVASCMRGVDEIHEWRNALNELRGL 365 (929)
Q Consensus 289 --~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~l~~l~~~ 365 (929)
... +.+++++.++..+++.+.+..... .-.++.+..|++.|+|.|-.+..++..+. ..+ .....
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~~~---~~~~~al~~ia~~~~G~pR~~~~ll~~~~--------~~a--~~~~~ 214 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLLNV---EIEPEAALEIARRSRGTPRIANRLLRRVR--------DFA--QVRGQ 214 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHHhCCCcchHHHHHHHHH--------HHH--HHcCC
Confidence 122 789999999999999988764322 22356778899999999966655444321 100 00000
Q ss_pred hccCCCCchhhhhhHHhhcccCCChhhhhHhh-hhccCCCCCccCHHHHHHHHHHcCcccchhcHHHHHHhHHHHHH-HH
Q 042574 366 VRSRNGVNADVLGRLEFSYHRLKDDKVQQCFL-YCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQAKYDRGHTILN-RL 443 (929)
Q Consensus 366 ~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~-~L 443 (929)
..-....-......+...|..++ ++.+..+. ..+.++.+ .+..+.+.... | .....+...++ .|
T Consensus 215 ~~it~~~v~~~l~~l~~~~~~l~-~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g---------~~~~~~~~~~e~~L 280 (305)
T TIGR00635 215 KIINRDIALKALEMLMIDELGLD-EIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G---------EDADTIEDVYEPYL 280 (305)
T ss_pred CCcCHHHHHHHHHHhCCCCCCCC-HHHHHHHHHHHHHhCCC-cccHHHHHHHh---C---------CCcchHHHhhhHHH
Confidence 00000001122223566778888 56555555 44555433 34443333221 1 12245666778 69
Q ss_pred HHccccccccCC
Q 042574 444 VNCCLLERAEDG 455 (929)
Q Consensus 444 ~~~~ll~~~~~~ 455 (929)
++++|++....|
T Consensus 281 i~~~li~~~~~g 292 (305)
T TIGR00635 281 LQIGFLQRTPRG 292 (305)
T ss_pred HHcCCcccCCch
Confidence 999999865433
No 29
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.06 E-value=3.3e-10 Score=117.77 Aligned_cols=193 Identities=25% Similarity=0.333 Sum_probs=102.2
Q ss_pred ccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHH---------
Q 042574 141 LAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQ--------- 211 (929)
Q Consensus 141 ~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~--------- 211 (929)
|+|| ++++++|.+++.++..+.+.|+|+.|+|||+|++++.+... . ..+ .++|+...+........
T Consensus 1 F~gR--~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~-~-~~~-~~~y~~~~~~~~~~~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGR--EKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK-E-KGY-KVVYIDFLEESNESSLRSFIEETSLA 75 (234)
T ss_dssp S-S---HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT----EE-CCCHHCCTTBSHHHHHHHHHHHHHHH
T ss_pred CCCH--HHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh-h-cCC-cEEEEecccchhhhHHHHHHHHHHHH
Confidence 6899 88999999999887778999999999999999999999762 1 111 34444443433221111
Q ss_pred HHHHHHhcCCCCC----------CccHHHHHHHHHHHHHh-cCcEEEEEecCCCcC-Ccc---c-------cccCCCCCC
Q 042574 212 TEIATALKQSLPE----------NEDKVRRAGRLSEMLKA-KAKFVLILDDMWEAF-PLE---E-------VGIPEPSEE 269 (929)
Q Consensus 212 ~~i~~~l~~~~~~----------~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~-~~~---~-------l~~~~~~~~ 269 (929)
..+...+...... ..........+.+.+.+ +++++||+||+.... ... . +........
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 155 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ 155 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC
Confidence 1122222221111 11223334445555442 456999999997654 111 1 111112223
Q ss_pred CCcEEEEEeCccccccc--------CCcce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHH
Q 042574 270 NGCKLVITTRSLGVSRS--------MDCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIV 340 (929)
Q Consensus 270 ~gs~ilvTtR~~~v~~~--------~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 340 (929)
+. .+|+++....+... .+... +.+++|+.+++++++...+... ... +.-++..++|+..+||+|..|.
T Consensus 156 ~~-~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 156 NV-SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp TE-EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHH
T ss_pred Cc-eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHh
Confidence 33 44454444333221 12222 8999999999999998865443 112 2235567999999999998886
Q ss_pred H
Q 042574 341 T 341 (929)
Q Consensus 341 ~ 341 (929)
.
T Consensus 233 ~ 233 (234)
T PF01637_consen 233 E 233 (234)
T ss_dssp H
T ss_pred c
Confidence 4
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.05 E-value=1.9e-09 Score=117.34 Aligned_cols=274 Identities=15% Similarity=0.151 Sum_probs=143.6
Q ss_pred ccccccchHHHHHHHHHHhc-----CCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLM-----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTE 213 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~-----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 213 (929)
.+|+|+ +..++.+..++. +.....+.|+|++|+||||+|+.+++... ..+ .++..+. ......+..
T Consensus 25 ~~~vG~--~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~---~~~---~~~~~~~-~~~~~~l~~ 95 (328)
T PRK00080 25 DEFIGQ--EKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG---VNI---RITSGPA-LEKPGDLAA 95 (328)
T ss_pred HHhcCc--HHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC---CCe---EEEeccc-ccChHHHHH
Confidence 789999 555555555443 23356789999999999999999999862 111 1222211 111112223
Q ss_pred HHHHhcCCCC---CC-ccH-HHHHHHHHHHHHhcCcEEEEEecCCCcCCccccccCCCCCCCCcEEEEEeCcccccccCC
Q 042574 214 IATALKQSLP---EN-EDK-VRRAGRLSEMLKAKAKFVLILDDMWEAFPLEEVGIPEPSEENGCKLVITTRSLGVSRSMD 288 (929)
Q Consensus 214 i~~~l~~~~~---~~-~~~-~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~~ 288 (929)
++..+....- ++ ... ......+...+ .+.+..+|+|+..+...+.. .++ +.+-|..|||...+.....
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~-e~~~~~~~l~~~~~~~~~~~---~l~---~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAM-EDFRLDIMIGKGPAARSIRL---DLP---PFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHH-HhcceeeeeccCccccceee---cCC---CceEEeecCCcccCCHHHH
Confidence 3333221100 00 000 00111122222 34455566665544322211 111 2456667777654433221
Q ss_pred --cce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHHhhhcCCCChhHHHHHHHHHhhh
Q 042574 289 --CKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVASCMRGVDEIHEWRNALNELRGL 365 (929)
Q Consensus 289 --~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~l~~l~~~ 365 (929)
... +.++++++++..+++.+.+..... .-.++.+..|++.|+|.|-.+..+...+. .|.... ...
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~---~~~~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~---~~~ 236 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGV---EIDEEGALEIARRSRGTPRIANRLLRRVR------DFAQVK---GDG 236 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHc---CCC
Confidence 122 899999999999999988765432 22356788999999999965544443321 111100 000
Q ss_pred hccCCCCchhhhhhHHhhcccCCChhhhhHhh-hhccCCCCCccCHHHHHHHHHHcCcccchhcHHHHHHhHHHHHH-HH
Q 042574 366 VRSRNGVNADVLGRLEFSYHRLKDDKVQQCFL-YCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQAKYDRGHTILN-RL 443 (929)
Q Consensus 366 ~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~-~L 443 (929)
... ...-......+...+..|+ +..+..+. ....|+.+ .+..+.+.... ....+.++..++ .|
T Consensus 237 ~I~-~~~v~~~l~~~~~~~~~l~-~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------------g~~~~~~~~~~e~~L 301 (328)
T PRK00080 237 VIT-KEIADKALDMLGVDELGLD-EMDRKYLRTIIEKFGGG-PVGLDTLAAAL------------GEERDTIEDVYEPYL 301 (328)
T ss_pred CCC-HHHHHHHHHHhCCCcCCCC-HHHHHHHHHHHHHcCCC-ceeHHHHHHHH------------CCCcchHHHHhhHHH
Confidence 000 0011233345566777887 55666664 55666655 45555443221 112245555677 89
Q ss_pred HHccccccccCC
Q 042574 444 VNCCLLERAEDG 455 (929)
Q Consensus 444 ~~~~ll~~~~~~ 455 (929)
++.+|++....|
T Consensus 302 i~~~li~~~~~g 313 (328)
T PRK00080 302 IQQGFIQRTPRG 313 (328)
T ss_pred HHcCCcccCCch
Confidence 999999865433
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.04 E-value=5.5e-11 Score=122.26 Aligned_cols=199 Identities=23% Similarity=0.261 Sum_probs=130.0
Q ss_pred ceEEEcCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecC-
Q 042574 477 LFMVKAGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSH- 555 (929)
Q Consensus 477 ~~~~~~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~- 555 (929)
......+.++.++|.. .++....+.+..|.++.+|+..|..+++||.|+|++|. +..|.+..|.+++.|-.|-+-+
T Consensus 49 ~~VdCr~~GL~eVP~~--LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPAN--LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred ceEEccCCCcccCccc--CCCcceEEEeccCCcccCChhhccchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcC
Confidence 3455677888999975 57788899999999999999999999999999999997 7777777778888877766555
Q ss_pred CCCcccCcc-cccccccceeecccccc-----------------------cccCc--cccccCCCCEEEccCCC-C----
Q 042574 556 TNIEVLPSS-VSNLTNLRSLLLRWCRR-----------------------LKRVP--SVAKLLALQYLDLERTW-I---- 604 (929)
Q Consensus 556 ~~i~~lp~~-i~~l~~L~~L~l~~~~~-----------------------~~~~~--~~~~l~~L~~L~l~~~~-i---- 604 (929)
|+|+.+|+. +++|..|+.|.+.-|.. +..++ ++..+..++++.+..|. +
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCn 205 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCN 205 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccc
Confidence 788888764 45666666555544321 12222 23334444444433221 0
Q ss_pred -------------------------------------------ccc--------------cc-cccCCCCCCEEEccCCC
Q 042574 605 -------------------------------------------EEV--------------PE-GMEMLENLSHLYLSSPP 626 (929)
Q Consensus 605 -------------------------------------------~~l--------------p~-~i~~l~~L~~L~l~~~~ 626 (929)
+++ |. .+.+|++|+.|++++|.
T Consensus 206 L~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~ 285 (498)
T KOG4237|consen 206 LPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNK 285 (498)
T ss_pred cchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCc
Confidence 000 11 13457778888888888
Q ss_pred CccCCCCccCCCCCccEEEeecCCchhcccHHHHhcccccccEeEEEecccccc
Q 042574 627 LKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDGLDSFEGHFSELKDF 680 (929)
Q Consensus 627 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~~l~~l 680 (929)
++.+..+.|..+.++++|++..|... ...-..+..+. .|+.|+++...++.+
T Consensus 286 i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls-~L~tL~L~~N~it~~ 337 (498)
T KOG4237|consen 286 ITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLS-GLKTLSLYDNQITTV 337 (498)
T ss_pred cchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccc-cceeeeecCCeeEEE
Confidence 87777777777788888877755321 11223344555 777777766655543
No 32
>PF05729 NACHT: NACHT domain
Probab=99.03 E-value=1.4e-09 Score=106.22 Aligned_cols=142 Identities=23% Similarity=0.309 Sum_probs=89.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhhcCC---CcEEEEEEECCCCCHH---HHHHHHHHHhcCCCCCCccHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNK---FNVVIWVTVSQPLDLI---KLQTEIATALKQSLPENEDKVRRAGRLS 236 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~s~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 236 (929)
+++.|+|.+|+||||+++.++.+....... +..++|...++..... .+...|..+...... .... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~---~~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIA---PIEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchh---hhHH---HHH
Confidence 589999999999999999999988433211 4567777766544322 344444444332211 1111 222
Q ss_pred HHHHhcCcEEEEEecCCCcCC---------cccccc-CCCC-CCCCcEEEEEeCcccc---cccCCcce-EecccCCHHH
Q 042574 237 EMLKAKAKFVLILDDMWEAFP---------LEEVGI-PEPS-EENGCKLVITTRSLGV---SRSMDCKE-IGVELLSQEE 301 (929)
Q Consensus 237 ~~l~~~~~~LlvlDdv~~~~~---------~~~l~~-~~~~-~~~gs~ilvTtR~~~v---~~~~~~~~-~~l~~L~~~~ 301 (929)
......+++++|+|++++... +..+.. .+.. ...+.+++||||.... ........ +.+++|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 333457899999999986432 111111 1111 2468999999998766 23333333 9999999999
Q ss_pred HHHHHHhhh
Q 042574 302 ALNLFLDKV 310 (929)
Q Consensus 302 ~~~Lf~~~~ 310 (929)
..+++.+.+
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999998765
No 33
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.92 E-value=1.6e-08 Score=121.97 Aligned_cols=310 Identities=14% Similarity=0.203 Sum_probs=178.9
Q ss_pred cccccchHHHHHHHHHHhc---CCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCH---HHHHHH
Q 042574 140 TLAGKKTKKVVERIWEDLM---GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDL---IKLQTE 213 (929)
Q Consensus 140 ~~vGr~~~~~~~~l~~~l~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~---~~~~~~ 213 (929)
.++|| +.+++.|...+. .+...++.+.|..|+|||+++++|.....+.++.|-...+-....+... .+.+++
T Consensus 1 ~l~GR--e~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGR--ETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCch--HhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHH
Confidence 36899 567777777664 4567799999999999999999999987444232222222222222222 222222
Q ss_pred HHHHh-------------------cCCCCC----------------------CccHHHHH-----HHHHHHHHhcCcEEE
Q 042574 214 IATAL-------------------KQSLPE----------------------NEDKVRRA-----GRLSEMLKAKAKFVL 247 (929)
Q Consensus 214 i~~~l-------------------~~~~~~----------------------~~~~~~~~-----~~l~~~l~~~~~~Ll 247 (929)
+..++ +..... ......+. ..+.....+.++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 32222 211000 00001111 112222235679999
Q ss_pred EEecC-CCcCC-ccccccCCCCCC----CCcEEE--EEeCcc--cccccCCcce-EecccCCHHHHHHHHHhhhcccCCC
Q 042574 248 ILDDM-WEAFP-LEEVGIPEPSEE----NGCKLV--ITTRSL--GVSRSMDCKE-IGVELLSQEEALNLFLDKVRISTSQ 316 (929)
Q Consensus 248 vlDdv-~~~~~-~~~l~~~~~~~~----~gs~il--vTtR~~--~v~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~ 316 (929)
|+||+ |-+.. ++-+........ ....|. .|.+.. .+-....... +.|.||+..+...+.....+...
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~-- 236 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK-- 236 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc--
Confidence 99999 54322 211111110000 011222 233322 1111122223 99999999999999998887642
Q ss_pred CCcchHHHHHHHHHhcCCccHHHHHHHhhhcCC------CChhHHHHHHHHHhhhhccCCCCchhhhhhHHhhcccCCCh
Q 042574 317 IPNLDKEIINSVVEECDGLPLAIVTVASCMRGV------DEIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDD 390 (929)
Q Consensus 317 ~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~------~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~ 390 (929)
....+..+.|+++..|+|+.+..+-..+..+ .+...|..-...+... +..+.+...+..-.+.|| .
T Consensus 237 --~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~-----~~~~~vv~~l~~rl~kL~-~ 308 (849)
T COG3899 237 --LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL-----ATTDAVVEFLAARLQKLP-G 308 (849)
T ss_pred --cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc-----hhhHHHHHHHHHHHhcCC-H
Confidence 2345678889999999999999998887663 3445565444333222 222346667899999999 7
Q ss_pred hhhhHhhhhccCCCCCccCHHHHHHHHHHcCcccchhcHHHHHHhHHHHHHHHHHccccccc-----cC-C--C-eEEec
Q 042574 391 KVQQCFLYCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLERA-----ED-G--G-CVKMH 461 (929)
Q Consensus 391 ~~k~cfl~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~-----~~-~--~-~~~mH 461 (929)
..|..+...|++...+. ...|...+-. ....++....+.|.....+-.. .. . . +-+.|
T Consensus 309 ~t~~Vl~~AA~iG~~F~--l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H 375 (849)
T COG3899 309 TTREVLKAAACIGNRFD--LDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLH 375 (849)
T ss_pred HHHHHHHHHHHhCccCC--HHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhH
Confidence 89999999999986654 4555444411 2334566666666665555421 11 1 2 34789
Q ss_pred hHHHHHHHHHhcc
Q 042574 462 DLIRDMALRIKSK 474 (929)
Q Consensus 462 dlv~~~a~~~~~~ 474 (929)
|+|++.|.....+
T Consensus 376 ~~vqqaaY~~i~~ 388 (849)
T COG3899 376 DRVQQAAYNLIPE 388 (849)
T ss_pred HHHHHHHhccCch
Confidence 9999999766544
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.86 E-value=1.7e-10 Score=123.96 Aligned_cols=160 Identities=26% Similarity=0.352 Sum_probs=115.1
Q ss_pred ccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcc
Q 042574 485 RLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSS 564 (929)
Q Consensus 485 ~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~ 564 (929)
++.++|........+..+.++.|.+..+|.... ++..|..|+++.|. +..+|..++ .--|++|-+++|+++.+|..
T Consensus 86 R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~-~L~~lt~l~ls~Nq-lS~lp~~lC--~lpLkvli~sNNkl~~lp~~ 161 (722)
T KOG0532|consen 86 RFSELPEEACAFVSLESLILYHNCIRTIPEAIC-NLEALTFLDLSSNQ-LSHLPDGLC--DLPLKVLIVSNNKLTSLPEE 161 (722)
T ss_pred ccccCchHHHHHHHHHHHHHHhccceecchhhh-hhhHHHHhhhccch-hhcCChhhh--cCcceeEEEecCccccCCcc
Confidence 345666655555566777777777777766554 67777778888776 666777662 33478888888888888888
Q ss_pred cccccccceeecccccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEE
Q 042574 565 VSNLTNLRSLLLRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKL 644 (929)
Q Consensus 565 i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 644 (929)
|+.+.+|..|+.+.|...+..+.++.+.+|+.|+++.|.+..+|..+..|+ |..||++.|++..+|.. |.+|++|++|
T Consensus 162 ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNkis~iPv~-fr~m~~Lq~l 239 (722)
T KOG0532|consen 162 IGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKISYLPVD-FRKMRHLQVL 239 (722)
T ss_pred cccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCceeecchh-hhhhhhheee
Confidence 887778888888876443333368888888888888888888887777554 77888888888777766 6788888888
Q ss_pred EeecCC
Q 042574 645 KLSFGN 650 (929)
Q Consensus 645 ~l~~~~ 650 (929)
-|.+|.
T Consensus 240 ~LenNP 245 (722)
T KOG0532|consen 240 QLENNP 245 (722)
T ss_pred eeccCC
Confidence 877665
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.79 E-value=2.2e-09 Score=117.39 Aligned_cols=62 Identities=21% Similarity=0.104 Sum_probs=27.0
Q ss_pred CCCcccEEEcccCCcCc----cCcHHHHccCCCCcEEEecCCCCcc-------cCcccccccccceeecccccc
Q 042574 519 HCKILSTLLLQRNGYLQ----RIPECFFMHMRGLKVLNLSHTNIEV-------LPSSVSNLTNLRSLLLRWCRR 581 (929)
Q Consensus 519 ~~~~L~~L~l~~~~~~~----~~~~~~~~~l~~L~~L~l~~~~i~~-------lp~~i~~l~~L~~L~l~~~~~ 581 (929)
.+.+|+.|.+.++.... .++.. +...+.|+.|+++++.+.. ++..+..+++|+.|++++|..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 93 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence 34445555555554211 12222 2344455555555554331 122333444555555555433
No 36
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.77 E-value=3.2e-08 Score=103.37 Aligned_cols=172 Identities=19% Similarity=0.266 Sum_probs=103.3
Q ss_pred ccccccch-HHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 139 ATLAGKKT-KKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 139 ~~~vGr~~-~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
.++||+++ -.+-.-|-..+..+.+.-+.+||++|+||||||+.+..... ..| ..++...+-.+-++++++
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~---~~f-----~~~sAv~~gvkdlr~i~e- 94 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN---AAF-----EALSAVTSGVKDLREIIE- 94 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC---Cce-----EEeccccccHHHHHHHHH-
Confidence 67788643 00123344556678889999999999999999999998652 333 333333322222222222
Q ss_pred hcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCC--cCCccccccCCCCCCCCcEEEE--EeCccccc--ccC--Cc
Q 042574 218 LKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWE--AFPLEEVGIPEPSEENGCKLVI--TTRSLGVS--RSM--DC 289 (929)
Q Consensus 218 l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~gs~ilv--TtR~~~v~--~~~--~~ 289 (929)
.-.+....+++++|++|.|.. ..+.+.+ .|.. .+|.-|+| ||.+.... ... .+
T Consensus 95 ----------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~l-Lp~v--E~G~iilIGATTENPsF~ln~ALlSR~ 155 (436)
T COG2256 95 ----------------EARKNRLLGRRTILFLDEIHRFNKAQQDAL-LPHV--ENGTIILIGATTENPSFELNPALLSRA 155 (436)
T ss_pred ----------------HHHHHHhcCCceEEEEehhhhcChhhhhhh-hhhh--cCCeEEEEeccCCCCCeeecHHHhhhh
Confidence 122223347899999999975 3333333 3333 56766665 77765432 112 23
Q ss_pred ceEecccCCHHHHHHHHHhhhcccCCCC---Cc-chHHHHHHHHHhcCCccHH
Q 042574 290 KEIGVELLSQEEALNLFLDKVRISTSQI---PN-LDKEIINSVVEECDGLPLA 338 (929)
Q Consensus 290 ~~~~l~~L~~~~~~~Lf~~~~~~~~~~~---~~-~~~~~~~~i~~~c~g~Pla 338 (929)
..+.+++|+.++..+++.+.+....... .. -.++....++..++|---+
T Consensus 156 ~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 156 RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 3389999999999999988543222111 11 2345667788888887543
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.76 E-value=7.3e-09 Score=99.48 Aligned_cols=77 Identities=29% Similarity=0.409 Sum_probs=15.8
Q ss_pred ccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCccc-ccccccceeecc
Q 042574 499 LERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSV-SNLTNLRSLLLR 577 (929)
Q Consensus 499 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L~l~ 577 (929)
++.|++.+|.++.+. .+...+.+|++|++++|. +..+.. +..++.|+.|++++|.++.++..+ ..+++|+.|+++
T Consensus 21 ~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 21 LRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp ----------------S--TT-TT--EEE-TTS---S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred ccccccccccccccc-chhhhhcCCCEEECCCCC-CccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 455555555555442 122234455555555554 333332 234455555555555555443333 234445555544
Q ss_pred cc
Q 042574 578 WC 579 (929)
Q Consensus 578 ~~ 579 (929)
+|
T Consensus 97 ~N 98 (175)
T PF14580_consen 97 NN 98 (175)
T ss_dssp TS
T ss_pred CC
Confidence 43
No 38
>PRK06893 DNA replication initiation factor; Validated
Probab=98.73 E-value=7.2e-08 Score=98.84 Aligned_cols=172 Identities=14% Similarity=0.201 Sum_probs=99.9
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHh
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATAL 218 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 218 (929)
.+|+|.+.......+.....+...+.+.|+|++|+|||+||+.+++..... ...+.|+++.... ..
T Consensus 16 d~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~---~~~~~y~~~~~~~---~~-------- 81 (229)
T PRK06893 16 DNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN---QRTAIYIPLSKSQ---YF-------- 81 (229)
T ss_pred cccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCCeEEeeHHHhh---hh--------
Confidence 556654322223333333333334678999999999999999999987322 2345666653110 00
Q ss_pred cCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCc---CCccc-cccCCCC-CCCCcEEEEE-eCc---------ccc
Q 042574 219 KQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEA---FPLEE-VGIPEPS-EENGCKLVIT-TRS---------LGV 283 (929)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~---~~~~~-l~~~~~~-~~~gs~ilvT-tR~---------~~v 283 (929)
...+.+.+ .+.-+|||||+|.. ..|+. +...+.. ...|..+||+ ++. .++
T Consensus 82 -------------~~~~~~~~--~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L 146 (229)
T PRK06893 82 -------------SPAVLENL--EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDL 146 (229)
T ss_pred -------------hHHHHhhc--ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhH
Confidence 00112222 13458999999863 23432 2211211 1235556554 443 345
Q ss_pred cccCCcce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHH
Q 042574 284 SRSMDCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTV 342 (929)
Q Consensus 284 ~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 342 (929)
.+++.... ++++++++++.++++++.+....- .-.+++..-|++.+.|..-++..+
T Consensus 147 ~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l---~l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 147 ASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGI---ELSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhccCCHHHHHHH
Confidence 55555555 899999999999999988764321 223567788888888776555443
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.68 E-value=2.6e-09 Score=105.85 Aligned_cols=131 Identities=24% Similarity=0.338 Sum_probs=105.0
Q ss_pred ccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceeec
Q 042574 497 ENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLL 576 (929)
Q Consensus 497 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l 576 (929)
+.++.+++++|.++.+..++. -.|.+|.|++++|. +..+.. ++.+++|..|||++|.++++-..-.+|-|.++|.|
T Consensus 284 q~LtelDLS~N~I~~iDESvK-L~Pkir~L~lS~N~-i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVK-LAPKLRRLILSQNR-IRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhhhhhhhh-hccceeEEeccccc-eeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 468889999998888776553 57899999999997 555544 36788999999999988877554466778889999
Q ss_pred ccccccccCccccccCCCCEEEccCCCCcccc--ccccCCCCCCEEEccCCCCccCCC
Q 042574 577 RWCRRLKRVPSVAKLLALQYLDLERTWIEEVP--EGMEMLENLSHLYLSSPPLKKFPT 632 (929)
Q Consensus 577 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~~~~~~~~~ 632 (929)
.+| .+..+..+++|.+|..||+++|+|..+. .+|++|+.|+++.+.+|++..++.
T Consensus 360 a~N-~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 360 AQN-KIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhh-hHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 986 6677788899999999999999888663 358999999999999988876654
No 40
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.68 E-value=1.9e-08 Score=96.62 Aligned_cols=123 Identities=26% Similarity=0.305 Sum_probs=32.8
Q ss_pred CCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceeecccccccccCc-cc-cccCCCCE
Q 042574 519 HCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLRWCRRLKRVP-SV-AKLLALQY 596 (929)
Q Consensus 519 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~-~~l~~L~~ 596 (929)
++.+++.|++.+|. +..+.. +-..+.+|+.|++++|.++.++ .+..+++|++|++++|. ++.++ .+ ..+++|++
T Consensus 17 n~~~~~~L~L~~n~-I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ-ISTIEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--E
T ss_pred cccccccccccccc-cccccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCE
Confidence 34455666666664 333321 1113556666666666666554 35556666666666553 33332 23 24566666
Q ss_pred EEccCCCCccccc--cccCCCCCCEEEccCCCCccCCC---CccCCCCCccEEE
Q 042574 597 LDLERTWIEEVPE--GMEMLENLSHLYLSSPPLKKFPT---GILPRLRNLYKLK 645 (929)
Q Consensus 597 L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~ 645 (929)
|++++|.|..+-. .+..+++|++|++.+|++...+. .++..+++|+.||
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 6666665553321 24455566666666655543321 1233445555544
No 41
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.58 E-value=4e-07 Score=102.22 Aligned_cols=176 Identities=16% Similarity=0.256 Sum_probs=101.9
Q ss_pred ccccccchHHHHHH---HHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVER---IWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIA 215 (929)
Q Consensus 139 ~~~vGr~~~~~~~~---l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 215 (929)
.+++|+ +..+.. +..++.++....+.|+|++|+||||+|+.+++... ..| +.++....-.+-.+.+.
T Consensus 12 ~d~vGq--~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~---~~~-----~~l~a~~~~~~~ir~ii 81 (413)
T PRK13342 12 DEVVGQ--EHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD---APF-----EALSAVTSGVKDLREVI 81 (413)
T ss_pred HHhcCc--HHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC---CCE-----EEEecccccHHHHHHHH
Confidence 678887 344333 66777777778899999999999999999998752 222 22222111111111121
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEE--EeCccc--ccccC--
Q 042574 216 TALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVI--TTRSLG--VSRSM-- 287 (929)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilv--TtR~~~--v~~~~-- 287 (929)
.. .......+++.+|++|+++... ..+.+...+. .|..++| ||.+.. +...+
T Consensus 82 ~~-----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~S 141 (413)
T PRK13342 82 EE-----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLS 141 (413)
T ss_pred HH-----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhc
Confidence 11 1111123578899999998642 2233332222 2445554 344322 11111
Q ss_pred CcceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHHh
Q 042574 288 DCKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVAS 344 (929)
Q Consensus 288 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 344 (929)
.+..+.+.+++.++.+.++.+.+...........++..+.|++.|+|.|..+..+..
T Consensus 142 R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 142 RAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred cceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 122389999999999999988654321111123356778899999999876654443
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=8.6e-09 Score=107.96 Aligned_cols=137 Identities=25% Similarity=0.230 Sum_probs=66.6
Q ss_pred cccccccEEEcccCCCCcCCC-CCCCCCCcccEEEcccCCcCccC-cHHHHccCCCCcEEEecCCCCcccCcc--ccccc
Q 042574 494 EWEENLERVSLMDNHIEEIPS-NMSPHCKILSTLLLQRNGYLQRI-PECFFMHMRGLKVLNLSHTNIEVLPSS--VSNLT 569 (929)
Q Consensus 494 ~~~~~l~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~i~~lp~~--i~~l~ 569 (929)
...++++.+++.+..+...+. .....|++++.|+++.|-+.... -..+...+++|+.|+|+.|.+.....+ -..+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 345667777777665554432 23446777777777776422111 123345677777777777765533222 13455
Q ss_pred ccceeecccccccc-cCc-cccccCCCCEEEccCCC-CccccccccCCCCCCEEEccCCCCccC
Q 042574 570 NLRSLLLRWCRRLK-RVP-SVAKLLALQYLDLERTW-IEEVPEGMEMLENLSHLYLSSPPLKKF 630 (929)
Q Consensus 570 ~L~~L~l~~~~~~~-~~~-~~~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~l~~~~~~~~ 630 (929)
+|+.|.+++|.... .+. -+-.+++|+.|++.+|. +..-.....-++.|+.|+|++|++..+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~ 261 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDF 261 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccc
Confidence 55555555553221 111 13334555555555552 111111122234455555555554433
No 43
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.57 E-value=4.8e-06 Score=95.98 Aligned_cols=206 Identities=14% Similarity=0.107 Sum_probs=117.4
Q ss_pred ccccccchHHHHHHHHHHhcC----CC-eeEEEEEcCCCChHHHHHHHHHHHHhhhc--CCCc--EEEEEEECCCCCHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMG----DK-VTKIGVWGMGGIGKTTIMKEINNRLQKET--NKFN--VVIWVTVSQPLDLIK 209 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~----~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~--~~~wv~~s~~~~~~~ 209 (929)
..++|| ++++++|..+|.. .. ..++.|+|++|+|||+.++.|..++.... .... .+++|.+..-.+...
T Consensus 755 D~LPhR--EeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 755 KYLPCR--EKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CcCCCh--HHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 567898 6777777666632 22 35778999999999999999998874321 1111 367777777778888
Q ss_pred HHHHHHHHhcCCCCC-CccHHHHHHHHHHHHHh--cCcEEEEEecCCCcC--CccccccCCC-CCCCCcEEEE--EeCcc
Q 042574 210 LQTEIATALKQSLPE-NEDKVRRAGRLSEMLKA--KAKFVLILDDMWEAF--PLEEVGIPEP-SEENGCKLVI--TTRSL 281 (929)
Q Consensus 210 ~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~~--~~~~LlvlDdv~~~~--~~~~l~~~~~-~~~~gs~ilv--TtR~~ 281 (929)
+...|.+++....+. ..........+...+.. +...+||||+|+... .-+.+...+. ....+++|+| +|...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 899999888543322 12223334444444321 234689999997532 1111110010 0123445444 33322
Q ss_pred --------cccccCCcceEecccCCHHHHHHHHHhhhcccCCCCC-cchHHHHHHHHHhcCCccHHHHHHHhhh
Q 042574 282 --------GVSRSMDCKEIGVELLSQEEALNLFLDKVRISTSQIP-NLDKEIINSVVEECDGLPLAIVTVASCM 346 (929)
Q Consensus 282 --------~v~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~-~~~~~~~~~i~~~c~g~Plai~~~~~~L 346 (929)
.+...++...+...|++.++..+++..++........ ..++-+|+.++...|-.=.||.++-.+.
T Consensus 913 DLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 913 DLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 2223333333677999999999999988764321112 2233334434444444456666554443
No 44
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.54 E-value=3e-09 Score=110.66 Aligned_cols=277 Identities=22% Similarity=0.202 Sum_probs=148.2
Q ss_pred CCCcEEEecCCCCc---ccCcccccccccceeecccccccccCc--c-ccccCCCCEEEccCC-CCccc--cccccCCCC
Q 042574 546 RGLKVLNLSHTNIE---VLPSSVSNLTNLRSLLLRWCRRLKRVP--S-VAKLLALQYLDLERT-WIEEV--PEGMEMLEN 616 (929)
Q Consensus 546 ~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~l~~~~~~~~~~--~-~~~l~~L~~L~l~~~-~i~~l--p~~i~~l~~ 616 (929)
..|+.|.+.++.-. .+-....++++++.|.+.+|..++.-. + -..+.+|++|++..| .++.. ......+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 34677788877522 232334677888888888887666544 3 345777888888886 55532 112345677
Q ss_pred CCEEEccCCC-CccCCC-CccCCCCCccEEEeecCCchhcccHHHHhcccccccEeEEEecccccchhcccccCCCCcee
Q 042574 617 LSHLYLSSPP-LKKFPT-GILPRLRNLYKLKLSFGNEALRETVEEAARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKH 694 (929)
Q Consensus 617 L~~L~l~~~~-~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~ 694 (929)
|.+|+++.|. +++-.. ....+++.|+.+...++.......+..+..-...+-.++
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~ln----------------------- 274 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLN----------------------- 274 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccc-----------------------
Confidence 7777777765 332100 012334444444333222111111111111000011110
Q ss_pred EEEEecccccccccccCcCCCceeEeecccccCCCC---cccCcccccceeeecccCcccccccCccccCcccccccccc
Q 042574 695 YCLLLSAYRMGAFMITGLELPKSVILNNYKICRGEE---PIVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHD 771 (929)
Q Consensus 695 l~~~~~~~~~~~~~~~~~~~~~~l~L~~~~~~~~~~---~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~ 771 (929)
+.+|..-.+.. --.....|+.|...+|....... +..++.-.++
T Consensus 275 -------------------------l~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~--------l~aLg~~~~~ 321 (483)
T KOG4341|consen 275 -------------------------LQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEV--------LWALGQHCHN 321 (483)
T ss_pred -------------------------hhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHH--------HHHHhcCCCc
Confidence 11111000000 01124567788888887655322 3344333348
Q ss_pred eeEEEEecCCCccccchhchhhhcCCccEEEEecCcchhhhhccCcchhhhhhccccccccccCCCcceeeccccccccc
Q 042574 772 LKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDSIKEIIAVEDEETEKELATNTIINTVTLPRLKKLRFYFLREFKR 851 (929)
Q Consensus 772 L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~ 851 (929)
|+.|.+..|.++++..-...-.+.+.|+.|++.+|..+..-. .. .....+|.|+.|.++.|...++
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t-L~-------------sls~~C~~lr~lslshce~itD 387 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT-LA-------------SLSRNCPRLRVLSLSHCELITD 387 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh-Hh-------------hhccCCchhccCChhhhhhhhh
Confidence 999999999887775332333567788888888885443220 00 1223688999999988877665
Q ss_pred ccc---cCccccCCCccEEEEeccCCCccccCCCCccCCCCCCCCCCcceE
Q 042574 852 FCS---NNGVLVCNSLQEIKVRGCPKLKRLSLSLPLLDNGQPSPPPALEVI 899 (929)
Q Consensus 852 i~~---~~~~~~~p~L~~L~I~~C~~L~~lP~~l~~l~~~~~~~~~~L~~i 899 (929)
... ..+......|+.+.+.+||.++.- .+.++ ..|++|+.|
T Consensus 388 ~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~--~Le~l-----~~c~~Leri 431 (483)
T KOG4341|consen 388 EGIRHLSSSSCSLEGLEVLELDNCPLITDA--TLEHL-----SICRNLERI 431 (483)
T ss_pred hhhhhhhhccccccccceeeecCCCCchHH--HHHHH-----hhCccccee
Confidence 511 113345667888899999877642 12222 337777776
No 45
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.3e-08 Score=106.63 Aligned_cols=179 Identities=20% Similarity=0.153 Sum_probs=118.5
Q ss_pred ccccccEEEcccCCCCcCC--CCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCc--ccCcccccccc
Q 042574 495 WEENLERVSLMDNHIEEIP--SNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIE--VLPSSVSNLTN 570 (929)
Q Consensus 495 ~~~~l~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~--~lp~~i~~l~~ 570 (929)
.+++++.|+++.|-+..+- ..+...+|+|+.|+++.|..........-..+++|+.|.|+.|.++ .+-...-.+++
T Consensus 144 ~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 144 ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 4567888888888554321 1223468889999999887443333222235788888999998877 33333456788
Q ss_pred cceeecccccccccCc-cccccCCCCEEEccCCCCccccc--cccCCCCCCEEEccCCCCccC--CCC-c---cCCCCCc
Q 042574 571 LRSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIEEVPE--GMEMLENLSHLYLSSPPLKKF--PTG-I---LPRLRNL 641 (929)
Q Consensus 571 L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~--~~~-~---l~~l~~L 641 (929)
|..|+|.+|..+..-. +..-++.|+.|||++|.+-..+. .++.++.|..|+++.|.+.++ |+. . ...+++|
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL 303 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL 303 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence 8888888875332222 45567788888998887776663 478888888888888877643 222 1 2457788
Q ss_pred cEEEeecCCchhcccHHHHhcccccccEeEEEe
Q 042574 642 YKLKLSFGNEALRETVEEAARLSDGLDSFEGHF 674 (929)
Q Consensus 642 ~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~ 674 (929)
+.|++..|.......+.++..+. +|+.|.+..
T Consensus 304 ~~L~i~~N~I~~w~sl~~l~~l~-nlk~l~~~~ 335 (505)
T KOG3207|consen 304 EYLNISENNIRDWRSLNHLRTLE-NLKHLRITL 335 (505)
T ss_pred eeeecccCccccccccchhhccc-hhhhhhccc
Confidence 88888877655555566666565 666555443
No 46
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.51 E-value=8.5e-08 Score=108.11 Aligned_cols=160 Identities=30% Similarity=0.400 Sum_probs=99.6
Q ss_pred ccccCCCcccccc-cccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCc
Q 042574 485 RLLKFPGEQEWEE-NLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPS 563 (929)
Q Consensus 485 ~l~~~p~~~~~~~-~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~ 563 (929)
.+.+++....... +++.|++++|.+..++... ..+++|+.|+++.|. +..+|... ...+.|+.|++++|.+..+|.
T Consensus 127 ~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~-~~l~~L~~L~l~~N~-l~~l~~~~-~~~~~L~~L~ls~N~i~~l~~ 203 (394)
T COG4886 127 NITDIPPLIGLLKSNLKELDLSDNKIESLPSPL-RNLPNLKNLDLSFND-LSDLPKLL-SNLSNLNNLDLSGNKISDLPP 203 (394)
T ss_pred ccccCccccccchhhcccccccccchhhhhhhh-hccccccccccCCch-hhhhhhhh-hhhhhhhheeccCCccccCch
Confidence 3445555444442 6667777777666664222 356667777777665 55555543 256667777777777777666
Q ss_pred ccccccccceeecccccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccE
Q 042574 564 SVSNLTNLRSLLLRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYK 643 (929)
Q Consensus 564 ~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 643 (929)
.+..+.+|++|.+++|..+..+..+.++.++..|.+.++.+..++..++.+++|+.|++++|.++.++. ++.+.+|+.
T Consensus 204 ~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~ 281 (394)
T COG4886 204 EIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRE 281 (394)
T ss_pred hhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc--ccccCccCE
Confidence 655666677777766544444445666666666666666666656666666677777777776666655 566667777
Q ss_pred EEeecC
Q 042574 644 LKLSFG 649 (929)
Q Consensus 644 L~l~~~ 649 (929)
|+++.+
T Consensus 282 L~~s~n 287 (394)
T COG4886 282 LDLSGN 287 (394)
T ss_pred EeccCc
Confidence 766644
No 47
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.51 E-value=3.8e-08 Score=107.64 Aligned_cols=180 Identities=19% Similarity=0.198 Sum_probs=101.5
Q ss_pred ccccEEEcccCCCCcCCCCCCCCC---CcccEEEcccCCcCc----cCcHHHHccC-CCCcEEEecCCCCc-----ccCc
Q 042574 497 ENLERVSLMDNHIEEIPSNMSPHC---KILSTLLLQRNGYLQ----RIPECFFMHM-RGLKVLNLSHTNIE-----VLPS 563 (929)
Q Consensus 497 ~~l~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~----~~~~~~~~~l-~~L~~L~l~~~~i~-----~lp~ 563 (929)
.+++.|++++|.+.......+..+ ++|+.|++++|.... .+... +..+ ++|+.|++++|.++ .++.
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 467778887776653221111122 448888888776321 12222 2445 77888888888766 3344
Q ss_pred ccccccccceeecccccccc----cCc-cccccCCCCEEEccCCCCc-----cccccccCCCCCCEEEccCCCCccCCCC
Q 042574 564 SVSNLTNLRSLLLRWCRRLK----RVP-SVAKLLALQYLDLERTWIE-----EVPEGMEMLENLSHLYLSSPPLKKFPTG 633 (929)
Q Consensus 564 ~i~~l~~L~~L~l~~~~~~~----~~~-~~~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 633 (929)
.+..+.+|++|++++|.... .++ .+..+++|++|++++|.+. .++..+..+++|++|++++|.++.....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 55666778888888765331 122 3455568888888888665 2334456677788888888776532111
Q ss_pred -----ccCCCCCccEEEeecCCchh---cccHHHHhcccccccEeEEEecccc
Q 042574 634 -----ILPRLRNLYKLKLSFGNEAL---RETVEEAARLSDGLDSFEGHFSELK 678 (929)
Q Consensus 634 -----~l~~l~~L~~L~l~~~~~~~---~~~~~~l~~l~~~L~~L~~~~~~l~ 678 (929)
.....+.|++|++++|.... ......+..+. +|+.+++....+.
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~-~L~~l~l~~N~l~ 291 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKE-SLLELDLRGNKFG 291 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCC-CccEEECCCCCCc
Confidence 11124678888887654211 11123344444 6666666544443
No 48
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.50 E-value=4.8e-07 Score=93.32 Aligned_cols=173 Identities=14% Similarity=0.168 Sum_probs=102.3
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHh
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATAL 218 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 218 (929)
.+|++......++.+..++.......|.|+|++|+|||+||+.+++.... .....++++++.-.+ ..
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~---~~~~~~~i~~~~~~~------~~---- 81 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE---RGKSAIYLPLAELAQ------AD---- 81 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh---cCCcEEEEeHHHHHH------hH----
Confidence 34443223556777777765666778999999999999999999988632 223455665432211 00
Q ss_pred cCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC---C-ccccccCCCC-CCCCcEEEEEeCccc---------cc
Q 042574 219 KQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF---P-LEEVGIPEPS-EENGCKLVITTRSLG---------VS 284 (929)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---~-~~~l~~~~~~-~~~gs~ilvTtR~~~---------v~ 284 (929)
..+...+. +.-+||+||++... . .+.+...+.. ...+..+|+||+... +.
T Consensus 82 --------------~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~ 145 (226)
T TIGR03420 82 --------------PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLR 145 (226)
T ss_pred --------------HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHH
Confidence 01111221 23489999997532 1 2223222211 123457889888532 11
Q ss_pred ccCCcce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHH
Q 042574 285 RSMDCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVA 343 (929)
Q Consensus 285 ~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 343 (929)
..+.... +++.++++++...++...+.... ..-.++..+.+++.++|.|..+..+.
T Consensus 146 ~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~---~~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 146 TRLAWGLVFQLPPLSDEEKIAALQSRAARRG---LQLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHhcCeeEecCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 2222223 89999999999999877543221 12235667778888899887776554
No 49
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.49 E-value=2e-08 Score=108.50 Aligned_cols=142 Identities=26% Similarity=0.342 Sum_probs=122.9
Q ss_pred ccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccc
Q 042574 487 LKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVS 566 (929)
Q Consensus 487 ~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~ 566 (929)
..+|........+..++++.|.+..+|..++ . --|++|.+++|+ ++.+|+.+ +.+.+|..||.+.|.+..+|..++
T Consensus 111 r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC-~-lpLkvli~sNNk-l~~lp~~i-g~~~tl~~ld~s~nei~slpsql~ 186 (722)
T KOG0532|consen 111 RTIPEAICNLEALTFLDLSSNQLSHLPDGLC-D-LPLKVLIVSNNK-LTSLPEEI-GLLPTLAHLDVSKNEIQSLPSQLG 186 (722)
T ss_pred eecchhhhhhhHHHHhhhccchhhcCChhhh-c-CcceeEEEecCc-cccCCccc-ccchhHHHhhhhhhhhhhchHHhh
Confidence 4567766777788999999999999988775 3 358999999997 88899988 689999999999999999999999
Q ss_pred cccccceeecccccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCC
Q 042574 567 NLTNLRSLLLRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTG 633 (929)
Q Consensus 567 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 633 (929)
.+..|+.|+++.|..+..++.++ --.|..||++.|+|..+|-.+.+|+.|++|.|.+|.+..-|..
T Consensus 187 ~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 187 YLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred hHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHH
Confidence 99999999999986555444777 4468999999999999999999999999999999999876654
No 50
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.46 E-value=5.5e-07 Score=83.93 Aligned_cols=117 Identities=22% Similarity=0.238 Sum_probs=80.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhc--CCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKET--NKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEML 239 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 239 (929)
-+.+.|+|.+|+|||++++.+.+...... ..-..++|+.+....+...+...|+.+++...............+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 46899999999999999999999873211 1134577999888889999999999999987655445566667777777
Q ss_pred HhcCcEEEEEecCCCc-C--CccccccCCCCCCCCcEEEEEeCc
Q 042574 240 KAKAKFVLILDDMWEA-F--PLEEVGIPEPSEENGCKLVITTRS 280 (929)
Q Consensus 240 ~~~~~~LlvlDdv~~~-~--~~~~l~~~~~~~~~gs~ilvTtR~ 280 (929)
.+.+..+||+||++.. . .++.+..... ..+.+||+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 7666679999999764 2 1223322222 567778887765
No 51
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=7.3e-06 Score=94.21 Aligned_cols=177 Identities=15% Similarity=0.183 Sum_probs=107.0
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHHhhhc------------------CCCcEEEEE
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKET------------------NKFNVVIWV 199 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 199 (929)
.+++|+ +..++.|..++..++ .+.+.++|..|+||||+|+.+.+.+.... +.|.-++++
T Consensus 16 dEVIGQ--e~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEI 93 (830)
T PRK07003 16 ASLVGQ--EHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEM 93 (830)
T ss_pred HHHcCc--HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEe
Confidence 678998 677888888888776 45778999999999999999988763110 011112222
Q ss_pred EECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH----HhcCcEEEEEecCCCcC--CccccccCCCCCCCCcE
Q 042574 200 TVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEML----KAKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCK 273 (929)
Q Consensus 200 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ 273 (929)
..+....+.+ +..+.+.. ..++.-++|||+++... .+..+...+.....+.+
T Consensus 94 DAas~rgVDd----------------------IReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~ 151 (830)
T PRK07003 94 DAASNRGVDE----------------------MAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVK 151 (830)
T ss_pred cccccccHHH----------------------HHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeE
Confidence 2221111111 11222221 12456688999998643 23333332322234667
Q ss_pred EEEEeCcc-cccccC--CcceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCcc-HHHHHH
Q 042574 274 LVITTRSL-GVSRSM--DCKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLP-LAIVTV 342 (929)
Q Consensus 274 ilvTtR~~-~v~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~ 342 (929)
+|+||.+. .+.... .+..+.+..++.++..+.+.+.+..... ....+..+.|++.++|.. -|+..+
T Consensus 152 FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI---~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 152 FILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI---AFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred EEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 77776653 333222 2333999999999999999887655422 123566788999998865 455543
No 52
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.41 E-value=3.7e-08 Score=97.90 Aligned_cols=117 Identities=28% Similarity=0.321 Sum_probs=60.6
Q ss_pred CCCCcEEEecCCCCcccCcccccccccceeecccccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccC
Q 042574 545 MRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSS 624 (929)
Q Consensus 545 l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~ 624 (929)
++.|..|||++|.|+.+-.++.-++.++.|++++| .+..+.++..|++|++|||++|.+.++-..=.+|-+.++|.+.+
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQN-RIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEecccc-ceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 34555666666666655555555666666666654 33334445555666666666665554433233444555555655
Q ss_pred CCCccCCCCccCCCCCccEEEeecCCchhcccHHHHhccc
Q 042574 625 PPLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLS 664 (929)
Q Consensus 625 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~ 664 (929)
|.+..+.. +++|-+|..|++..|.......+..++++.
T Consensus 362 N~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LP 399 (490)
T KOG1259|consen 362 NKIETLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLP 399 (490)
T ss_pred hhHhhhhh--hHhhhhheeccccccchhhHHHhccccccc
Confidence 55544422 455555555555555433333333333333
No 53
>PF13173 AAA_14: AAA domain
Probab=98.41 E-value=4.9e-07 Score=83.54 Aligned_cols=119 Identities=20% Similarity=0.209 Sum_probs=75.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKA 241 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (929)
-+++.|.|+.|+||||++++++.+.. ....+++++..+......... + ....+.+.. .
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~----~~~~~~yi~~~~~~~~~~~~~--------------~---~~~~~~~~~-~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL----PPENILYINFDDPRDRRLADP--------------D---LLEYFLELI-K 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc----ccccceeeccCCHHHHHHhhh--------------h---hHHHHHHhh-c
Confidence 36899999999999999999998862 234467776554322110000 0 111122221 2
Q ss_pred cCcEEEEEecCCCcCCccccccCCCCCCCCcEEEEEeCccccc-----ccCCcce--EecccCCHHHH
Q 042574 242 KAKFVLILDDMWEAFPLEEVGIPEPSEENGCKLVITTRSLGVS-----RSMDCKE--IGVELLSQEEA 302 (929)
Q Consensus 242 ~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~-----~~~~~~~--~~l~~L~~~~~ 302 (929)
.++.+++||++....+|......+-+.....+|++|+...... ....... ++|.||+..|.
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 3678899999998878776655555444567999999875443 2222222 89999998763
No 54
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.40 E-value=6.1e-07 Score=92.03 Aligned_cols=92 Identities=16% Similarity=0.177 Sum_probs=62.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCC--CCHHHHHHHHHHHhcCCCCCCccHH-----HHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP--LDLIKLQTEIATALKQSLPENEDKV-----RRAG 233 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~-----~~~~ 233 (929)
....++|+|++|+|||||++++++... . .+|+.++|+.+... .++.++++.+...+-....+..... ..+.
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~-~-~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAIT-K-NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccc-c-ccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 356899999999999999999999873 2 38999999997776 7899999988332221111111111 1111
Q ss_pred HHHHH-HHhcCcEEEEEecCCC
Q 042574 234 RLSEM-LKAKAKFVLILDDMWE 254 (929)
Q Consensus 234 ~l~~~-l~~~~~~LlvlDdv~~ 254 (929)
...+. ...++++++++|++..
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHH
Confidence 12222 2357899999999964
No 55
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=2.4e-05 Score=85.20 Aligned_cols=199 Identities=19% Similarity=0.241 Sum_probs=125.4
Q ss_pred ccccccchHHHHHHHHHHh----cCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDL----MGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEI 214 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 214 (929)
..+.+| +.+++++...+ .++.+.-+.|+|.+|+|||+.++.+...........+ +++|.+-...+..+++..|
T Consensus 17 ~~l~~R--e~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 17 EELPHR--EEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccc--HHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHH
Confidence 347888 66666666555 3445556999999999999999999999854433333 7899999999999999999
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHHHh-cCcEEEEEecCCCcCCc--c---ccccCCCCCCCCcEEE--EEeCccc----
Q 042574 215 ATALKQSLPENEDKVRRAGRLSEMLKA-KAKFVLILDDMWEAFPL--E---EVGIPEPSEENGCKLV--ITTRSLG---- 282 (929)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~~~--~---~l~~~~~~~~~gs~il--vTtR~~~---- 282 (929)
+++++..........+....+.+.+.. ++.+++|||+++....- + .+..... ..+++|+ ..+-+..
T Consensus 94 ~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~--~~~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 94 LNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPG--ENKVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred HHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcc--ccceeEEEEEEeccHHHHHH
Confidence 999974433334444555556666543 67899999999753221 1 1211111 1144443 3333322
Q ss_pred ----ccccCCcceEecccCCHHHHHHHHHhhhccc--CCCCCcchHHHHHHHHHhcCC-ccHHHHHH
Q 042574 283 ----VSRSMDCKEIGVELLSQEEALNLFLDKVRIS--TSQIPNLDKEIINSVVEECDG-LPLAIVTV 342 (929)
Q Consensus 283 ----v~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~~~~~~i~~~c~g-~Plai~~~ 342 (929)
|...++...+..+|-+.++-...+..++... .....+..-+++..++..-+| -=.|+..+
T Consensus 172 ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 172 LDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 2333444447889999999999998876432 222344444444445555554 33444443
No 56
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.38 E-value=4.4e-06 Score=92.03 Aligned_cols=195 Identities=14% Similarity=0.167 Sum_probs=105.7
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCc-EEEEEEECCCCCH-HHHHH---H
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFN-VVIWVTVSQPLDL-IKLQT---E 213 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~-~~~~~---~ 213 (929)
..++|+ +..++.+..++..+..+.+.++|++|+||||+|+.+++.... ..+. ..+.+++++-.+. ..... .
T Consensus 15 ~~~~g~--~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQ--DEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG--DPWENNFTEFNVADFFDQGKKYLVEDPR 90 (337)
T ss_pred HHhcCC--HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC--cccccceEEechhhhhhcchhhhhcCcc
Confidence 678898 677888888888877667889999999999999999987631 2222 2344444321100 00000 0
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHHH-----hcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEEEeCcc-cccc
Q 042574 214 IATALKQSLPENEDKVRRAGRLSEMLK-----AKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVITTRSL-GVSR 285 (929)
Q Consensus 214 i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~-~v~~ 285 (929)
....++...............+.+... .+.+-+||+||+.... ....+...+......+++|+||... .+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIP 170 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCch
Confidence 000000000000011112222222221 1234589999996532 1222222222223446777777542 2222
Q ss_pred cCCcc--eEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHH
Q 042574 286 SMDCK--EIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIV 340 (929)
Q Consensus 286 ~~~~~--~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 340 (929)
.+... .+.+.+++.++....+.+.+..... .-..+.+..+++.++|.+-.+.
T Consensus 171 ~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~---~~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 171 PIRSRCLPLFFRAPTDDELVDVLESIAEAEGV---DYDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhcCCceEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 22222 2889999999999999887654332 1235677889999988764443
No 57
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.34 E-value=2.5e-06 Score=81.27 Aligned_cols=120 Identities=18% Similarity=0.169 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCc
Q 042574 147 KKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENE 226 (929)
Q Consensus 147 ~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 226 (929)
+..+..+...+.....+.+.|+|++|+||||+|+.+++... ..-..++++...+..........+...
T Consensus 4 ~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~--------- 71 (151)
T cd00009 4 EEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDLLEGLVVAELFGHF--------- 71 (151)
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhhhhhhHHHHHhhhh---------
Confidence 56777788887776678899999999999999999999873 222346677665543322211111000
Q ss_pred cHHHHHHHHHHHHHhcCcEEEEEecCCCc-----CCccccccCCCC---CCCCcEEEEEeCccc
Q 042574 227 DKVRRAGRLSEMLKAKAKFVLILDDMWEA-----FPLEEVGIPEPS---EENGCKLVITTRSLG 282 (929)
Q Consensus 227 ~~~~~~~~l~~~l~~~~~~LlvlDdv~~~-----~~~~~l~~~~~~---~~~gs~ilvTtR~~~ 282 (929)
............++.++|+||++.. ..+......... ...+..||+||....
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0000111112346889999999853 112221112211 135778888887653
No 58
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.34 E-value=3.7e-06 Score=86.28 Aligned_cols=174 Identities=19% Similarity=0.266 Sum_probs=104.8
Q ss_pred ccccccch-HHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 139 ATLAGKKT-KKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 139 ~~~vGr~~-~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
.++||++. -..-.-|-..++.+++..+.+||++|+||||||+.+..... ... ..||..|....-..-.+.|.++
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk--~~S---yrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSK--KHS---YRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcC--CCc---eEEEEEeccccchHHHHHHHHH
Confidence 56677632 00123455666778899999999999999999999988652 122 5677777654443334444433
Q ss_pred hcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCC--cCCccccccCCCCCCCCcEEEE--EeCccccc----ccCCc
Q 042574 218 LKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWE--AFPLEEVGIPEPSEENGCKLVI--TTRSLGVS----RSMDC 289 (929)
Q Consensus 218 l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~gs~ilv--TtR~~~v~----~~~~~ 289 (929)
-.. . ....++|.+|++|.|.. ..+. +.+.|.- .+|.-++| ||.+...- -.-.+
T Consensus 213 aq~--------------~--~~l~krkTilFiDEiHRFNksQQ-D~fLP~V--E~G~I~lIGATTENPSFqln~aLlSRC 273 (554)
T KOG2028|consen 213 AQN--------------E--KSLTKRKTILFIDEIHRFNKSQQ-DTFLPHV--ENGDITLIGATTENPSFQLNAALLSRC 273 (554)
T ss_pred HHH--------------H--HhhhcceeEEEeHHhhhhhhhhh-hccccee--ccCceEEEecccCCCccchhHHHHhcc
Confidence 211 1 11246899999999964 3333 3333333 56666655 77775431 11223
Q ss_pred ceEecccCCHHHHHHHHHhhhc---ccC---CCCCc----chHHHHHHHHHhcCCcc
Q 042574 290 KEIGVELLSQEEALNLFLDKVR---IST---SQIPN----LDKEIINSVVEECDGLP 336 (929)
Q Consensus 290 ~~~~l~~L~~~~~~~Lf~~~~~---~~~---~~~~~----~~~~~~~~i~~~c~g~P 336 (929)
..+.|++|..++...++.+... ... ...+. -...+..-++..|.|-.
T Consensus 274 ~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 274 RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 3389999999999999987432 111 11122 12455666777787765
No 59
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.34 E-value=8.1e-06 Score=80.18 Aligned_cols=174 Identities=19% Similarity=0.233 Sum_probs=91.2
Q ss_pred ccccccchHHHHHH---HHHHhc--CCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHH
Q 042574 139 ATLAGKKTKKVVER---IWEDLM--GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTE 213 (929)
Q Consensus 139 ~~~vGr~~~~~~~~---l~~~l~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 213 (929)
.+|+|++ ..++. +++... ++.+.-+.+||++|+||||||.-+++... ..| .+++...-....++
T Consensus 24 ~efiGQ~--~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~---~~~---~~~sg~~i~k~~dl--- 92 (233)
T PF05496_consen 24 DEFIGQE--HLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG---VNF---KITSGPAIEKAGDL--- 92 (233)
T ss_dssp CCS-S-H--HHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT-----E---EEEECCC--SCHHH---
T ss_pred HHccCcH--HHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC---CCe---EeccchhhhhHHHH---
Confidence 7899984 33333 333332 34577899999999999999999999862 233 22222110011111
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC--C-------ccccccC-CCCCC-----------CCc
Q 042574 214 IATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF--P-------LEEVGIP-EPSEE-----------NGC 272 (929)
Q Consensus 214 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~-------~~~l~~~-~~~~~-----------~gs 272 (929)
..+...+ +++.+|++|++..-. + .|+...- .-..+ +=+
T Consensus 93 -------------------~~il~~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 93 -------------------AAILTNL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp -------------------HHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred -------------------HHHHHhc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 1112222 246678888886421 0 1111110 00011 123
Q ss_pred EEEEEeCcccccccCCcce---EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHHhhhc
Q 042574 273 KLVITTRSLGVSRSMDCKE---IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVASCMR 347 (929)
Q Consensus 273 ~ilvTtR~~~v~~~~~~~~---~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~ 347 (929)
-|=.|||...+..-+.... .+++..+.+|-.++..+.+..-. -+-.++.+.+|++++.|-|--+.-+-..++
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~---i~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN---IEIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC---CCcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 4557999876665555444 47999999999999988765432 233467899999999999966555444443
No 60
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=5.1e-06 Score=94.17 Aligned_cols=176 Identities=14% Similarity=0.169 Sum_probs=105.0
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhhhc---C--------------------CCc
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKET---N--------------------KFN 194 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~--------------------~f~ 194 (929)
.++||. +..++.|.+++..+++ +.+.++|..|+||||+|+.+.+.+.... . .|.
T Consensus 16 ddVIGQ--e~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hp 93 (700)
T PRK12323 16 TTLVGQ--EHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFV 93 (700)
T ss_pred HHHcCc--HHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCC
Confidence 678998 6777788888887774 5779999999999999999998773210 0 000
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH----HhcCcEEEEEecCCCcC--CccccccCCCCC
Q 042574 195 VVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEML----KAKAKFVLILDDMWEAF--PLEEVGIPEPSE 268 (929)
Q Consensus 195 ~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~ 268 (929)
-++++..+...++ +.+..+.+.. ..++.-++|+|+++... ..+.+...+..-
T Consensus 94 DviEIdAas~~gV----------------------DdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEP 151 (700)
T PRK12323 94 DYIEMDAASNRGV----------------------DEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP 151 (700)
T ss_pred cceEecccccCCH----------------------HHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccC
Confidence 1112211111111 1122222222 13567789999997642 233333333222
Q ss_pred CCCcE-EEEEeCcccccccCC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHH
Q 042574 269 ENGCK-LVITTRSLGVSRSMD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVT 341 (929)
Q Consensus 269 ~~gs~-ilvTtR~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 341 (929)
..+.+ |++||....+..... +..+.+..++.++..+.+.+.+..... ....+..+.|++.++|.|.....
T Consensus 152 P~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi---~~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 152 PEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI---AHEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred CCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 23445 455555555543222 223999999999999998877654322 12245567899999999854443
No 61
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.30 E-value=4.4e-05 Score=89.55 Aligned_cols=198 Identities=13% Similarity=0.096 Sum_probs=105.1
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCC---cEEEEEEECC---CCCHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKF---NVVIWVTVSQ---PLDLIKLQT 212 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f---~~~~wv~~s~---~~~~~~~~~ 212 (929)
..++|+ +..+..+...+.......+.|+|++|+||||+|+.+++... ....+ ...-|+.+.. ..+...+..
T Consensus 154 ~~iiGq--s~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~-~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 154 SEIVGQ--ERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAK-KLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred HhceeC--cHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhh-hccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 678898 45566677777666677899999999999999999988752 22222 1223444432 122222211
Q ss_pred HH---------------HHHhcCCC------------------CCCccHHHHHHHHHHHHHhcCcEEEEEecCCCc--CC
Q 042574 213 EI---------------ATALKQSL------------------PENEDKVRRAGRLSEMLKAKAKFVLILDDMWEA--FP 257 (929)
Q Consensus 213 ~i---------------~~~l~~~~------------------~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~ 257 (929)
.+ +...+... ....+ ......+.+.+ ..+++.++-|+.|.. ..
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~L-e~~~v~~~~~~~~~~~~~~ 308 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVL-EDKRVEFSSSYYDPDDPNV 308 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHH-hhCeEEeecceeccCCccc
Confidence 11 11111000 00001 11233444454 345677776655542 34
Q ss_pred ccccccCCCCCCCCcEEEE--EeCccc-ccccCCc--ceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhc
Q 042574 258 LEEVGIPEPSEENGCKLVI--TTRSLG-VSRSMDC--KEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEEC 332 (929)
Q Consensus 258 ~~~l~~~~~~~~~gs~ilv--TtR~~~-v~~~~~~--~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c 332 (929)
|+.+...+....+...|++ ||++.. +...+.. ..+.+.+++.+|.+.++.+.+..... .-.+++.+.|.+.+
T Consensus 309 ~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v---~ls~eal~~L~~ys 385 (615)
T TIGR02903 309 PKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV---HLAAGVEELIARYT 385 (615)
T ss_pred chhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHCC
Confidence 5555544554444444555 566433 2221211 12788999999999999987654321 11234555555555
Q ss_pred CCccHHHHHHHh
Q 042574 333 DGLPLAIVTVAS 344 (929)
Q Consensus 333 ~g~Plai~~~~~ 344 (929)
..-+-|+..++.
T Consensus 386 ~~gRraln~L~~ 397 (615)
T TIGR02903 386 IEGRKAVNILAD 397 (615)
T ss_pred CcHHHHHHHHHH
Confidence 433455544433
No 62
>PLN03025 replication factor C subunit; Provisional
Probab=98.30 E-value=8.3e-06 Score=88.42 Aligned_cols=178 Identities=15% Similarity=0.177 Sum_probs=102.1
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCc-EEEEEEECCCCCHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFN-VVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
.+++|. +..++.|..++..++.+-+.++|++|+||||+|+.+++.... ..|. .++-+..++..+... .++++..
T Consensus 13 ~~~~g~--~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~--~~~~~~~~eln~sd~~~~~~-vr~~i~~ 87 (319)
T PLN03025 13 DDIVGN--EDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG--PNYKEAVLELNASDDRGIDV-VRNKIKM 87 (319)
T ss_pred HHhcCc--HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc--ccCccceeeecccccccHHH-HHHHHHH
Confidence 678887 566777777777777666889999999999999999998621 2222 122223333323222 2222221
Q ss_pred hcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEEEeCcc-cccccCC--cceE
Q 042574 218 LKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVITTRSL-GVSRSMD--CKEI 292 (929)
Q Consensus 218 l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~-~v~~~~~--~~~~ 292 (929)
+..... ....++.-++|+|+++... ....+...+......+++++++... .+..... +..+
T Consensus 88 ~~~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i 153 (319)
T PLN03025 88 FAQKKV--------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIV 153 (319)
T ss_pred HHhccc--------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcc
Confidence 110000 0002346789999997632 1122221122123456777766542 2221111 2228
Q ss_pred ecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHH
Q 042574 293 GVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLA 338 (929)
Q Consensus 293 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 338 (929)
++.++++++....+...+...... -.++....|++.++|..-.
T Consensus 154 ~f~~l~~~~l~~~L~~i~~~egi~---i~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 154 RFSRLSDQEILGRLMKVVEAEKVP---YVPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHH
Confidence 999999999999998877554321 1245678899999887633
No 63
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.29 E-value=2.7e-06 Score=90.72 Aligned_cols=92 Identities=16% Similarity=0.168 Sum_probs=62.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCC--CHHHHHHHHHHHhcCCCCCCccHH-H----HHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL--DLIKLQTEIATALKQSLPENEDKV-R----RAG 233 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i~~~l~~~~~~~~~~~-~----~~~ 233 (929)
.....+|+|++|+||||||+++++.... .+|+.++||.+.+.. .+.++++.|...+-....+..... . .+.
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~~--nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSITT--NHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHHh--hcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999999743 389999999998887 777888887633222211111111 1 111
Q ss_pred HHHHHH-HhcCcEEEEEecCCC
Q 042574 234 RLSEML-KAKAKFVLILDDMWE 254 (929)
Q Consensus 234 ~l~~~l-~~~~~~LlvlDdv~~ 254 (929)
...+.+ ..+++++|++|++..
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHH
Confidence 122222 357999999999954
No 64
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.6e-05 Score=87.62 Aligned_cols=188 Identities=16% Similarity=0.219 Sum_probs=102.2
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
.+++|. +..++.+...+..++ .+.+.++|+.|+||||+|+.+++...... ... ......-....++...
T Consensus 16 ~~iiGq--~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~-~~~-------~~pc~~c~~c~~~~~~ 85 (363)
T PRK14961 16 RDIIGQ--KHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQN-GIT-------SNPCRKCIICKEIEKG 85 (363)
T ss_pred hhccCh--HHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCC-CCC-------CCCCCCCHHHHHHhcC
Confidence 678997 667777888887766 46789999999999999999998763110 000 0000000000111110
Q ss_pred hcCCC---C-CCccHHHHHHHHHHHHH----hcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEEEeCc-cccccc
Q 042574 218 LKQSL---P-ENEDKVRRAGRLSEMLK----AKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVITTRS-LGVSRS 286 (929)
Q Consensus 218 l~~~~---~-~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~-~~v~~~ 286 (929)
...+. . ...........+...+. .+++-++|+|++.... .++.+...+.......++|++|.+ ..+...
T Consensus 86 ~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~t 165 (363)
T PRK14961 86 LCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKT 165 (363)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHH
Confidence 00000 0 00001111222222221 2346689999997643 233333333322345566666644 333322
Q ss_pred CC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHH
Q 042574 287 MD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAI 339 (929)
Q Consensus 287 ~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 339 (929)
.. +..+++.+++.++..+.+...+..... .-.++.+..|++.++|.|-.+
T Consensus 166 I~SRc~~~~~~~l~~~el~~~L~~~~~~~g~---~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 166 ILSRCLQFKLKIISEEKIFNFLKYILIKESI---DTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHhhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 22 223999999999999988876544321 123456778999999988543
No 65
>PRK04195 replication factor C large subunit; Provisional
Probab=98.27 E-value=3.6e-05 Score=88.39 Aligned_cols=176 Identities=16% Similarity=0.189 Sum_probs=103.4
Q ss_pred ccccccchHHHHHHHHHHhcC---C-CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMG---D-KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEI 214 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~---~-~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 214 (929)
.+++|+ +..++.+.+|+.. + ..+.+.|+|++|+||||+|+.++++. .++ ++-+++++..+... ...+
T Consensus 14 ~dlvg~--~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~-~ielnasd~r~~~~-i~~~ 84 (482)
T PRK04195 14 SDVVGN--EKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWE-VIELNASDQRTADV-IERV 84 (482)
T ss_pred HHhcCC--HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCC-EEEEcccccccHHH-HHHH
Confidence 678998 6677777777753 2 26889999999999999999999976 133 33344444333222 2222
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC------ccccccCCCCCCCCcEEEEEeCcc-cccc-c
Q 042574 215 ATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP------LEEVGIPEPSEENGCKLVITTRSL-GVSR-S 286 (929)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~------~~~l~~~~~~~~~gs~ilvTtR~~-~v~~-~ 286 (929)
+....... .+...++-+||+|+++.... +..+...+. ..+..||+|+.+. .... .
T Consensus 85 i~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 85 AGEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HHHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhh
Confidence 22211100 01112578999999976321 222322222 2233466655432 2211 1
Q ss_pred CC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHH
Q 042574 287 MD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVA 343 (929)
Q Consensus 287 ~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 343 (929)
.. +..+.+.+++.++....+.+.+...... -..+....|++.++|..-.+....
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~---i~~eaL~~Ia~~s~GDlR~ain~L 203 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIE---CDDEALKEIAERSGGDLRSAINDL 203 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 2228999999999999888776543321 225678889999999875554433
No 66
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=2.9e-06 Score=93.84 Aligned_cols=186 Identities=14% Similarity=0.152 Sum_probs=103.9
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
.+++|. +..+..|..++.++.+ +.+.++|+.|+||||+|+.+++...... ... ...+....+-. .|...
T Consensus 18 ~dvVGQ--e~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~--~~~--~~pCg~C~sC~----~i~~g 87 (484)
T PRK14956 18 RDVIHQ--DLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCEN--PIG--NEPCNECTSCL----EITKG 87 (484)
T ss_pred HHHhCh--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCccc--ccC--ccccCCCcHHH----HHHcc
Confidence 678997 5667778888888775 4689999999999999999998763211 000 00111111111 11111
Q ss_pred hcCCC---CC-CccHHHHHHHHHHHH----HhcCcEEEEEecCCCc--CCccccccCCCCCCCCcEEE-EEeCccccccc
Q 042574 218 LKQSL---PE-NEDKVRRAGRLSEML----KAKAKFVLILDDMWEA--FPLEEVGIPEPSEENGCKLV-ITTRSLGVSRS 286 (929)
Q Consensus 218 l~~~~---~~-~~~~~~~~~~l~~~l----~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~il-vTtR~~~v~~~ 286 (929)
..... .. .......+..+...+ ..+++-++|+|++... ..++.+...+........+| .||....+...
T Consensus 88 ~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~T 167 (484)
T PRK14956 88 ISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPET 167 (484)
T ss_pred CCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHH
Confidence 11000 00 000111122222222 2356779999999753 23444433332222344444 55554555432
Q ss_pred CC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccH
Q 042574 287 MD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPL 337 (929)
Q Consensus 287 ~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 337 (929)
.. +..+.+.+++.++..+.+.+.+..... .-.++....|++.++|.+-
T Consensus 168 I~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi---~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 168 ILSRCQDFIFKKVPLSVLQDYSEKLCKIENV---QYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHhhhheeeecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCChHH
Confidence 22 333899999999999988877654321 1235567889999999873
No 67
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.27 E-value=6.2e-07 Score=101.13 Aligned_cols=169 Identities=31% Similarity=0.403 Sum_probs=127.0
Q ss_pred ccccEEEcccCCCCcCCCCCCCCCC-cccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceee
Q 042574 497 ENLERVSLMDNHIEEIPSNMSPHCK-ILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLL 575 (929)
Q Consensus 497 ~~l~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~ 575 (929)
..+..+++.+|.+.+++.... ..+ +|+.|++++|. +..+|..+ ..++.|+.|++++|++..+|...+.+++|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~-~~~~nL~~L~l~~N~-i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIG-LLKSNLKELDLSDNK-IESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCccccc-cchhhcccccccccc-hhhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 457888888888888876543 443 89999999887 67775444 688999999999999998888777888999999
Q ss_pred cccccccccCc-cccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCCchhc
Q 042574 576 LRWCRRLKRVP-SVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGNEALR 654 (929)
Q Consensus 576 l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 654 (929)
+++| .+..+| .+..+..|++|.+++|.+...+..+.++.++..|.+.+|.+..++.. ++++++|+.|+++.|.....
T Consensus 193 ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~-~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 193 LSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPES-IGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred ccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccch-hccccccceecccccccccc
Confidence 9986 556666 45677779999998887777777788888888888888877665443 68888899998886653322
Q ss_pred ccHHHHhcccccccEeEEEe
Q 042574 655 ETVEEAARLSDGLDSFEGHF 674 (929)
Q Consensus 655 ~~~~~l~~l~~~L~~L~~~~ 674 (929)
.. ++.+. +++.|.++.
T Consensus 271 ~~---~~~~~-~l~~L~~s~ 286 (394)
T COG4886 271 SS---LGSLT-NLRELDLSG 286 (394)
T ss_pred cc---ccccC-ccCEEeccC
Confidence 22 55555 666666544
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.26 E-value=4.1e-08 Score=102.44 Aligned_cols=85 Identities=20% Similarity=0.227 Sum_probs=54.3
Q ss_pred CCCCcccEEEcccCCcCccC-cHHHHccCCCCcEEEecCCC-Cccc-Cc-ccccccccceeecccccccccCc---cccc
Q 042574 518 PHCKILSTLLLQRNGYLQRI-PECFFMHMRGLKVLNLSHTN-IEVL-PS-SVSNLTNLRSLLLRWCRRLKRVP---SVAK 590 (929)
Q Consensus 518 ~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~-i~~l-p~-~i~~l~~L~~L~l~~~~~~~~~~---~~~~ 590 (929)
..|+++..|.+.+|..++.- -.++-..++.|++|++..|. ++.. .+ -...+++|++|++++|..++.-. -...
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 46888888888887654432 23334567888888888854 5521 22 23568888999999887665522 2444
Q ss_pred cCCCCEEEccCC
Q 042574 591 LLALQYLDLERT 602 (929)
Q Consensus 591 l~~L~~L~l~~~ 602 (929)
+.+|+.+.+.||
T Consensus 241 ~~~l~~~~~kGC 252 (483)
T KOG4341|consen 241 CKELEKLSLKGC 252 (483)
T ss_pred chhhhhhhhccc
Confidence 555666666665
No 69
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.25 E-value=1.9e-05 Score=85.53 Aligned_cols=176 Identities=16% Similarity=0.267 Sum_probs=108.8
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHHhh---hcCCCcEEEEEEE-CCCCCHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQK---ETNKFNVVIWVTV-SQPLDLIKLQTE 213 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~-s~~~~~~~~~~~ 213 (929)
.+++|. +..++.+...+..+. .+...++|+.|+||||+|+.++..... ...|.|...|... +....+.++. +
T Consensus 4 ~~i~g~--~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir-~ 80 (313)
T PRK05564 4 HTIIGH--ENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIR-N 80 (313)
T ss_pred hhccCc--HHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHH-H
Confidence 457886 677888888888776 467799999999999999999987521 2345666556542 2333333322 2
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCC--cCCccccccCCCCCCCCcEEEEEeCccc-ccccC--C
Q 042574 214 IATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWE--AFPLEEVGIPEPSEENGCKLVITTRSLG-VSRSM--D 288 (929)
Q Consensus 214 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~gs~ilvTtR~~~-v~~~~--~ 288 (929)
+.+.+.... . .+++-++|+|+++. ...+..+...+..-..++.+|++|.+.+ +.... .
T Consensus 81 ~~~~~~~~p----------------~-~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR 143 (313)
T PRK05564 81 IIEEVNKKP----------------Y-EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR 143 (313)
T ss_pred HHHHHhcCc----------------c-cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh
Confidence 333322110 0 23456777777754 3334444444443356788888886543 21111 2
Q ss_pred cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHH
Q 042574 289 CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVT 341 (929)
Q Consensus 289 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 341 (929)
+..+.+.++++++....+.+.... ..++.+..++..++|.|..+..
T Consensus 144 c~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 144 CQIYKLNRLSKEEIEKFISYKYND-------IKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred ceeeeCCCcCHHHHHHHHHHHhcC-------CCHHHHHHHHHHcCCCHHHHHH
Confidence 333899999999998888665421 1134467789999999865543
No 70
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=1.4e-05 Score=90.39 Aligned_cols=174 Identities=16% Similarity=0.175 Sum_probs=103.1
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHHhhhcC---------CCc-------------E
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETN---------KFN-------------V 195 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---------~f~-------------~ 195 (929)
.+++|. +..+..+...+..+. .+.+.++|+.|+||||+|+.+++....... .+. -
T Consensus 21 ~dliGq--~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~D 98 (507)
T PRK06645 21 AELQGQ--EVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPD 98 (507)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCc
Confidence 678997 566777777676666 468999999999999999999998732110 000 0
Q ss_pred EEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH----HhcCcEEEEEecCCCc--CCccccccCCCCCC
Q 042574 196 VIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEML----KAKAKFVLILDDMWEA--FPLEEVGIPEPSEE 269 (929)
Q Consensus 196 ~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~ 269 (929)
++.+......++.+ +..+.... ..+++-++|+|+++.. ..++.+...+....
T Consensus 99 v~eidaas~~~vd~----------------------Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp 156 (507)
T PRK06645 99 IIEIDAASKTSVDD----------------------IRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPP 156 (507)
T ss_pred EEEeeccCCCCHHH----------------------HHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcC
Confidence 11111111111111 11122211 1246778999999863 23444433333223
Q ss_pred CCcEEE-EEeCcccccccCC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHH
Q 042574 270 NGCKLV-ITTRSLGVSRSMD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAI 339 (929)
Q Consensus 270 ~gs~il-vTtR~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 339 (929)
..+.+| +||+...+..... +..+++.+++.++....+.+.+..... ...++....|++.++|.+--+
T Consensus 157 ~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi---~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 157 PHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL---KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred CCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 455555 4555555543222 223899999999999999988765432 123456677999999877433
No 71
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.9e-05 Score=89.86 Aligned_cols=184 Identities=16% Similarity=0.147 Sum_probs=104.7
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECC-------CCCHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-------PLDLIKL 210 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-------~~~~~~~ 210 (929)
.+++|. +..++.|..++.++.. +.+.++|++|+||||+|+.+++..... +.+....|+|.+. ..++..
T Consensus 14 ~dvvGq--~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~-~~~~~~cg~C~sc~~i~~~~h~dv~e- 89 (504)
T PRK14963 14 DEVVGQ--EHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS-GEDPKPCGECESCLAVRRGAHPDVLE- 89 (504)
T ss_pred HHhcCh--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc-CCCCCCCCcChhhHHHhcCCCCceEE-
Confidence 678997 5667778888877764 567999999999999999999987321 1122122222111 000000
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHHH----hcCcEEEEEecCCCc--CCccccccCCCCCCCCcEEEEEe-Ccccc
Q 042574 211 QTEIATALKQSLPENEDKVRRAGRLSEMLK----AKAKFVLILDDMWEA--FPLEEVGIPEPSEENGCKLVITT-RSLGV 283 (929)
Q Consensus 211 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTt-R~~~v 283 (929)
++.. .. .....+..+...+. .+++-++|+|+++.. ..++.+...+........+|++| +...+
T Consensus 90 -------l~~~--~~-~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl 159 (504)
T PRK14963 90 -------IDAA--SN-NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKM 159 (504)
T ss_pred -------eccc--cc-CCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhC
Confidence 0000 00 00111122222211 245678999999753 22344433333223344555544 33444
Q ss_pred cccCC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHH
Q 042574 284 SRSMD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAI 339 (929)
Q Consensus 284 ~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 339 (929)
..... +..+++.+++.++..+.+.+.+..... ...++.+..|++.++|.+--+
T Consensus 160 ~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi---~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 160 PPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR---EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred ChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 33222 223999999999999999887654432 123567788999999988544
No 72
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.3e-05 Score=94.19 Aligned_cols=179 Identities=13% Similarity=0.175 Sum_probs=104.0
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhhhcC-----C-------------CcEEEEE
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETN-----K-------------FNVVIWV 199 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----~-------------f~~~~wv 199 (929)
.+++|. +..+..|..++..+++ +.+.++|+.|+||||+|+.+++.+..... + |.-++++
T Consensus 16 ddIIGQ--e~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEi 93 (944)
T PRK14949 16 EQMVGQ--SHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEV 93 (944)
T ss_pred HHhcCc--HHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEe
Confidence 678998 6667778888877775 45689999999999999999988732100 0 1111222
Q ss_pred EECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCc--CCccccccCCCCCCCCcEEEEE
Q 042574 200 TVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEA--FPLEEVGIPEPSEENGCKLVIT 277 (929)
Q Consensus 200 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilvT 277 (929)
..+....+..+ ++|... +...-..+++-++|||++... ...+.+...+.......++|++
T Consensus 94 dAas~~kVDdI-ReLie~-----------------v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 94 DAASRTKVDDT-RELLDN-----------------VQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred ccccccCHHHH-HHHHHH-----------------HHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 11111111111 112111 111111356789999999763 2333333222222234555554
Q ss_pred e-CcccccccC--CcceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHH
Q 042574 278 T-RSLGVSRSM--DCKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIV 340 (929)
Q Consensus 278 t-R~~~v~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 340 (929)
| ....+.... .+..+++.+|+.++....+.+.+.... .....+.+..|++.++|.|--+.
T Consensus 156 TTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg---I~~edeAL~lIA~~S~Gd~R~AL 218 (944)
T PRK14949 156 TTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ---LPFEAEALTLLAKAANGSMRDAL 218 (944)
T ss_pred CCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHH
Confidence 4 444443221 233499999999999999988765432 12235677889999999885443
No 73
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.23 E-value=1.5e-05 Score=82.00 Aligned_cols=170 Identities=15% Similarity=0.178 Sum_probs=100.4
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHh
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATAL 218 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 218 (929)
..++| .-...+..+..+......+.+.|+|+.|+|||+|++.+++.... ....+.|+++.....
T Consensus 23 ~f~~~-~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~---~~~~v~y~~~~~~~~------------ 86 (235)
T PRK08084 23 SFYPG-DNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ---RGRAVGYVPLDKRAW------------ 86 (235)
T ss_pred ccccC-ccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEEHHHHhh------------
Confidence 33456 33445555655555555678999999999999999999998632 223466776532100
Q ss_pred cCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCc---CCccc-cccCCCC-CCCC-cEEEEEeCcc---------cc
Q 042574 219 KQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEA---FPLEE-VGIPEPS-EENG-CKLVITTRSL---------GV 283 (929)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~---~~~~~-l~~~~~~-~~~g-s~ilvTtR~~---------~v 283 (929)
....+.+.+. +--+|++||+... ..|+. +...+.. ...| .++|+||+.. ++
T Consensus 87 ------------~~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L 152 (235)
T PRK08084 87 ------------FVPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDL 152 (235)
T ss_pred ------------hhHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHH
Confidence 0011122221 1247899999642 23332 1111110 0123 4799999853 23
Q ss_pred cccCCcce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHH
Q 042574 284 SRSMDCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVT 341 (929)
Q Consensus 284 ~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 341 (929)
..++.... ++++++++++-.+++.+++.... -.-.+++..-|++.+.|..-++..
T Consensus 153 ~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~---~~l~~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 153 ASRLDWGQIYKLQPLSDEEKLQALQLRARLRG---FELPEDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred HHHHhCCceeeecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhhcCCHHHHHH
Confidence 33444444 89999999999999887664432 122366777888888876544443
No 74
>PRK08727 hypothetical protein; Validated
Probab=98.22 E-value=1.1e-05 Score=82.92 Aligned_cols=168 Identities=13% Similarity=0.147 Sum_probs=96.9
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHh
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATAL 218 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 218 (929)
..|++.+ ......+.....+.....+.|+|+.|+|||+|++.+++... .. ...+.|+++.+ ....+
T Consensus 19 ~~f~~~~-~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~-~~--~~~~~y~~~~~------~~~~~---- 84 (233)
T PRK08727 19 DSYIAAP-DGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAE-QA--GRSSAYLPLQA------AAGRL---- 84 (233)
T ss_pred hhccCCc-HHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHH-Hc--CCcEEEEeHHH------hhhhH----
Confidence 4455442 23344443333333345699999999999999999999863 22 23456665322 11111
Q ss_pred cCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC---CccccccCCCC--CCCCcEEEEEeCcc---------ccc
Q 042574 219 KQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF---PLEEVGIPEPS--EENGCKLVITTRSL---------GVS 284 (929)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---~~~~l~~~~~~--~~~gs~ilvTtR~~---------~v~ 284 (929)
....+.+ .+.-+||+||+.... .++.....+.. ...|..||+||+.. ++.
T Consensus 85 --------------~~~~~~l--~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~ 148 (233)
T PRK08727 85 --------------RDALEAL--EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLR 148 (233)
T ss_pred --------------HHHHHHH--hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHH
Confidence 1122222 235689999996432 22221111111 13466799999852 222
Q ss_pred ccCCcce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHH
Q 042574 285 RSMDCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAI 339 (929)
Q Consensus 285 ~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 339 (929)
+++.... +++++++.++-.+++.+.+.... -.-.++....|++.++|..-.+
T Consensus 149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~---l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 149 SRLAQCIRIGLPVLDDVARAAVLRERAQRRG---LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHhcCceEEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhCCCCHHHH
Confidence 2333333 89999999999999998665432 1223566777888887665444
No 75
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.22 E-value=2e-05 Score=86.04 Aligned_cols=177 Identities=12% Similarity=0.185 Sum_probs=102.0
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEE--CCCCCHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV--SQPLDLIKLQTEIAT 216 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~i~~ 216 (929)
.+++|+ +..++.+..++..+..+.+.|+|++|+||||+|+.+++..... .+. ..++.+ +.......+...+ .
T Consensus 17 ~~~~g~--~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~--~~~-~~~i~~~~~~~~~~~~~~~~i-~ 90 (319)
T PRK00440 17 DEIVGQ--EEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGE--DWR-ENFLELNASDERGIDVIRNKI-K 90 (319)
T ss_pred HHhcCc--HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCC--ccc-cceEEeccccccchHHHHHHH-H
Confidence 678898 6778888888887777778999999999999999999986321 221 122222 2222221111111 1
Q ss_pred HhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEEEeCcc-cccccCC--cce
Q 042574 217 ALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVITTRSL-GVSRSMD--CKE 291 (929)
Q Consensus 217 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~-~v~~~~~--~~~ 291 (929)
.+....+ .....+-++++|+++... ....+...+......+++|+++... .+..... +..
T Consensus 91 ~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 91 EFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred HHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 1110000 001235689999986432 1222222222223345677766432 2221111 112
Q ss_pred EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHH
Q 042574 292 IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAI 339 (929)
Q Consensus 292 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 339 (929)
+++.++++++....+...+..... .-.++.+..+++.++|.+--+
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~---~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGI---EITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 889999999999988887654332 123567788999999987553
No 76
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=1.2e-05 Score=91.55 Aligned_cols=175 Identities=16% Similarity=0.187 Sum_probs=103.8
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHHhhhc------------------CCCcEEEEE
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKET------------------NKFNVVIWV 199 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 199 (929)
.+++|+ +..++.|..++.+++ .+.+.++|+.|+||||+|+.+++...... +.|.-++.+
T Consensus 15 ddVIGQ--e~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEI 92 (702)
T PRK14960 15 NELVGQ--NHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEI 92 (702)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEe
Confidence 678998 667888888888776 46889999999999999999988762110 001011122
Q ss_pred EECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH----HhcCcEEEEEecCCCcC--CccccccCCCCCCCCcE
Q 042574 200 TVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEML----KAKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCK 273 (929)
Q Consensus 200 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ 273 (929)
..+....+ ..++.+.... ..+++-++|+|++.... ....+...+.....+.+
T Consensus 93 DAAs~~~V----------------------ddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~ 150 (702)
T PRK14960 93 DAASRTKV----------------------EDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVK 150 (702)
T ss_pred cccccCCH----------------------HHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcE
Confidence 21111111 1112222211 13566789999997532 23333322222234556
Q ss_pred EEEEeCc-cccccc--CCcceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHH
Q 042574 274 LVITTRS-LGVSRS--MDCKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIV 340 (929)
Q Consensus 274 ilvTtR~-~~v~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 340 (929)
+|+||.+ ..+... -.+..+++.+++.++..+.+.+.+..... ....+....|++.++|.+-.+.
T Consensus 151 FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI---~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 151 FLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI---AADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred EEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 7776654 222211 12233899999999999999887654422 2235567789999999874443
No 77
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.22 E-value=1.1e-06 Score=69.21 Aligned_cols=57 Identities=39% Similarity=0.496 Sum_probs=28.0
Q ss_pred cccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccC-cccccccccceeecccc
Q 042574 522 ILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLP-SSVSNLTNLRSLLLRWC 579 (929)
Q Consensus 522 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~ 579 (929)
+|++|++++|. +..+|...|.++++|++|++++|.++.+| ..+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~-l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNK-LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSST-ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCC-CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 34445555443 44444444455555555555555555443 23455555555555544
No 78
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.20 E-value=1.2e-06 Score=68.98 Aligned_cols=58 Identities=34% Similarity=0.433 Sum_probs=42.6
Q ss_pred CCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecC
Q 042574 592 LALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFG 649 (929)
Q Consensus 592 ~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 649 (929)
++|++|++++|.++.+|.. +.++++|++|++++|.++.++++.|.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3567777777777777754 667777777777777777777777777777777777755
No 79
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=2.6e-05 Score=87.95 Aligned_cols=184 Identities=17% Similarity=0.180 Sum_probs=102.7
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhhhcCC------------------CcEEEEE
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNK------------------FNVVIWV 199 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~------------------f~~~~wv 199 (929)
.+++|. +.....+...+.++.+ +.+.++|++|+||||+|+.+++........ +..+..+
T Consensus 14 ~divGq--~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el 91 (472)
T PRK14962 14 SEVVGQ--DHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIEL 91 (472)
T ss_pred HHccCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEE
Confidence 678998 5566777777777775 568999999999999999998876321100 0011222
Q ss_pred EECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCc--CCccccccCCCCCCCCcEEEEE
Q 042574 200 TVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEA--FPLEEVGIPEPSEENGCKLVIT 277 (929)
Q Consensus 200 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilvT 277 (929)
..+...++..+. +|...... .-..+++-++|+|+++.- ...+.+...+........+|++
T Consensus 92 ~aa~~~gid~iR-~i~~~~~~-----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ila 153 (472)
T PRK14962 92 DAASNRGIDEIR-KIRDAVGY-----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLA 153 (472)
T ss_pred eCcccCCHHHHH-HHHHHHhh-----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 222222222111 12111110 001245679999999643 2223333233222233444444
Q ss_pred -eCcccccccCCc--ceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCc-cHHHHHHHhh
Q 042574 278 -TRSLGVSRSMDC--KEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGL-PLAIVTVASC 345 (929)
Q Consensus 278 -tR~~~v~~~~~~--~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~~~~ 345 (929)
|....+...... ..+.+.+++.++....+.+.+..... .-.++....|++.++|. +.|+..+-.+
T Consensus 154 ttn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi---~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 154 TTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI---EIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred eCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 433344332222 22889999999999988887644321 12355677788888654 6666666543
No 80
>PRK09087 hypothetical protein; Validated
Probab=98.16 E-value=1.2e-05 Score=81.75 Aligned_cols=141 Identities=10% Similarity=0.104 Sum_probs=86.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLK 240 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 240 (929)
..+.+.|+|+.|+|||+|++.++.... ..+++.. .+...+ ...+.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~--------~~~i~~~------~~~~~~---------------------~~~~~ 87 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSD--------ALLIHPN------EIGSDA---------------------ANAAA 87 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcC--------CEEecHH------HcchHH---------------------HHhhh
Confidence 346799999999999999998887541 1233221 111111 11111
Q ss_pred hcCcEEEEEecCCCcC-CccccccCCC-CCCCCcEEEEEeCc---------ccccccCCcce-EecccCCHHHHHHHHHh
Q 042574 241 AKAKFVLILDDMWEAF-PLEEVGIPEP-SEENGCKLVITTRS---------LGVSRSMDCKE-IGVELLSQEEALNLFLD 308 (929)
Q Consensus 241 ~~~~~LlvlDdv~~~~-~~~~l~~~~~-~~~~gs~ilvTtR~---------~~v~~~~~~~~-~~l~~L~~~~~~~Lf~~ 308 (929)
.-+|++||+.... +-+.+...+. -...|..||+|++. .++..++.... +++++++.++-.+++++
T Consensus 88 ---~~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 88 ---EGPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred ---cCeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 1278889996431 1122221111 01346789999874 23334444445 99999999999999998
Q ss_pred hhcccCCCCCcchHHHHHHHHHhcCCccHHHHHH
Q 042574 309 KVRISTSQIPNLDKEIINSVVEECDGLPLAIVTV 342 (929)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 342 (929)
++....- .-.+++..-|++.+.|..-++..+
T Consensus 165 ~~~~~~~---~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 165 LFADRQL---YVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHcCC---CCCHHHHHHHHHHhhhhHHHHHHH
Confidence 8755321 223677888888888877666543
No 81
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=4.6e-05 Score=82.71 Aligned_cols=195 Identities=15% Similarity=0.160 Sum_probs=108.3
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHHhhhcC-CCcEEEEEEECCCCCHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETN-KFNVVIWVTVSQPLDLIKLQTEIAT 216 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~s~~~~~~~~~~~i~~ 216 (929)
..++|. +.....+...+.+++ ...+.|+|+.|+||||+|..++........ .+... .......-....+.|..
T Consensus 23 ~~l~Gh--~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~~ 97 (351)
T PRK09112 23 TRLFGH--EEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIAQ 97 (351)
T ss_pred hhccCc--HHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHHc
Confidence 778997 677888888888776 457999999999999999999998732110 01111 00001111112222322
Q ss_pred Hhc-------CCCCC------CccHHHHHHHHHHHHH----hcCcEEEEEecCCCcC--CccccccCCCCCCCCcE-EEE
Q 042574 217 ALK-------QSLPE------NEDKVRRAGRLSEMLK----AKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCK-LVI 276 (929)
Q Consensus 217 ~l~-------~~~~~------~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~-ilv 276 (929)
.-. .+... ..-..+.+..+.+++. .+++-++|+|+++... ..+.+...+.....+.. |++
T Consensus 98 ~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLi 177 (351)
T PRK09112 98 GAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILI 177 (351)
T ss_pred CCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEE
Confidence 110 00000 0011223334444443 3567799999997642 22222221111122334 455
Q ss_pred EeCcccccccCC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHH
Q 042574 277 TTRSLGVSRSMD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVA 343 (929)
Q Consensus 277 TtR~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 343 (929)
|++...+..... +..+++.+++.++..+++.+..... . ..++.+..+++.++|.|.....+.
T Consensus 178 t~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~----~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 178 SHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ----G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc----C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 555444432222 2239999999999999998742111 1 224557789999999998665443
No 82
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.15 E-value=2.6e-05 Score=79.15 Aligned_cols=158 Identities=18% Similarity=0.241 Sum_probs=91.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKA 241 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (929)
...+.|+|..|+|||.|.+++++...... .-..++|++ ..++...+...+... ....+...+.
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-~~~~v~y~~------~~~f~~~~~~~~~~~---------~~~~~~~~~~- 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQH-PGKRVVYLS------AEEFIREFADALRDG---------EIEEFKDRLR- 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHC-TTS-EEEEE------HHHHHHHHHHHHHTT---------SHHHHHHHHC-
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhcc-ccccceeec------HHHHHHHHHHHHHcc---------cchhhhhhhh-
Confidence 45689999999999999999999874332 233466775 345555565555431 1123444442
Q ss_pred cCcEEEEEecCCCcCC---cc-ccccCCC-CCCCCcEEEEEeCccc---------ccccCCcce-EecccCCHHHHHHHH
Q 042574 242 KAKFVLILDDMWEAFP---LE-EVGIPEP-SEENGCKLVITTRSLG---------VSRSMDCKE-IGVELLSQEEALNLF 306 (929)
Q Consensus 242 ~~~~LlvlDdv~~~~~---~~-~l~~~~~-~~~~gs~ilvTtR~~~---------v~~~~~~~~-~~l~~L~~~~~~~Lf 306 (929)
.-=+|++||++.... |+ .+...+. ....|.+||+|++... +.+++.... +++++++.++..+++
T Consensus 97 -~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il 175 (219)
T PF00308_consen 97 -SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRIL 175 (219)
T ss_dssp -TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHH
T ss_pred -cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHH
Confidence 355889999975322 22 1211111 0135678999997532 222333444 899999999999999
Q ss_pred HhhhcccCCCCCcchHHHHHHHHHhcCCccHHHH
Q 042574 307 LDKVRISTSQIPNLDKEIINSVVEECDGLPLAIV 340 (929)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 340 (929)
.+.+....- .-.++++.-|++.+.+..-.+.
T Consensus 176 ~~~a~~~~~---~l~~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 176 QKKAKERGI---ELPEEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHTT-----S-HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHHhCC---CCcHHHHHHHHHhhcCCHHHHH
Confidence 988765432 1235667777777765544443
No 83
>PF14516 AAA_35: AAA-like domain
Probab=98.14 E-value=0.00076 Score=73.26 Aligned_cols=199 Identities=14% Similarity=0.160 Sum_probs=113.2
Q ss_pred cccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCC-----CCHHHHHH
Q 042574 138 TATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-----LDLIKLQT 212 (929)
Q Consensus 138 ~~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-----~~~~~~~~ 212 (929)
+...|+|. ..-+++.+.+.+. ...+.|.|+-.+|||||...+.+.... ..+ .++++++..- .+..++++
T Consensus 10 ~~~Yi~R~--~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~--~~~-~~v~id~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 10 SPFYIERP--PAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQ--QGY-RCVYIDLQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CCcccCch--HHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHH--CCC-EEEEEEeecCCCcccCCHHHHHH
Confidence 35567883 2345556666553 368999999999999999999988742 233 4567776542 24566665
Q ss_pred HHHHHhcCCCCCCc-----------cHHHHHHHHHHHHH--hcCcEEEEEecCCCcCC---c-cccccCCC----C----
Q 042574 213 EIATALKQSLPENE-----------DKVRRAGRLSEMLK--AKAKFVLILDDMWEAFP---L-EEVGIPEP----S---- 267 (929)
Q Consensus 213 ~i~~~l~~~~~~~~-----------~~~~~~~~l~~~l~--~~~~~LlvlDdv~~~~~---~-~~l~~~~~----~---- 267 (929)
.++..+.....-.. .......-+.+.+. .+++.+|+||+|+.... + .++...+. .
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~ 163 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNN 163 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccC
Confidence 55554433221110 00111111222222 25899999999975322 1 11111110 0
Q ss_pred CCCCcEEEEEeCcccc---cc----cCCcce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHH
Q 042574 268 EENGCKLVITTRSLGV---SR----SMDCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAI 339 (929)
Q Consensus 268 ~~~gs~ilvTtR~~~v---~~----~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 339 (929)
.....-.+|...+.+. .. -+.... +.|++++.+|...|..+.-..- -.+..++|...+||+|.-+
T Consensus 164 ~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-------~~~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 164 PIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-------SQEQLEQLMDWTGGHPYLV 236 (331)
T ss_pred cccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-------CHHHHHHHHHHHCCCHHHH
Confidence 0011112222221111 11 112222 8999999999999987753221 1223888999999999999
Q ss_pred HHHHhhhcCC
Q 042574 340 VTVASCMRGV 349 (929)
Q Consensus 340 ~~~~~~L~~~ 349 (929)
..++..+...
T Consensus 237 ~~~~~~l~~~ 246 (331)
T PF14516_consen 237 QKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHc
Confidence 9999999763
No 84
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.13 E-value=9.7e-06 Score=80.64 Aligned_cols=48 Identities=23% Similarity=0.462 Sum_probs=33.1
Q ss_pred cccccchHHHHHHHHHHh---cCCCeeEEEEEcCCCChHHHHHHHHHHHHhhh
Q 042574 140 TLAGKKTKKVVERIWEDL---MGDKVTKIGVWGMGGIGKTTIMKEINNRLQKE 189 (929)
Q Consensus 140 ~~vGr~~~~~~~~l~~~l---~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 189 (929)
.|+|| +++++++...+ .....+.+.|+|++|+|||+|+++++......
T Consensus 1 ~fvgR--~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGR--EEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT---HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCH--HHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47999 78899999988 33457899999999999999999999988443
No 85
>PLN03150 hypothetical protein; Provisional
Probab=98.12 E-value=5.2e-06 Score=98.15 Aligned_cols=102 Identities=23% Similarity=0.325 Sum_probs=62.2
Q ss_pred CcEEEecCCCCc-ccCcccccccccceeecccccccccCc-cccccCCCCEEEccCCCCc-cccccccCCCCCCEEEccC
Q 042574 548 LKVLNLSHTNIE-VLPSSVSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIE-EVPEGMEMLENLSHLYLSS 624 (929)
Q Consensus 548 L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~ 624 (929)
++.|+|++|.+. .+|..++.+++|+.|+|++|.....+| .++.+++|+.|+|++|.+. .+|..++++++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 566666666665 566666667777777776665555555 5666777777777777665 4566666677777777776
Q ss_pred CCCccCCCCccCC-CCCccEEEeecC
Q 042574 625 PPLKKFPTGILPR-LRNLYKLKLSFG 649 (929)
Q Consensus 625 ~~~~~~~~~~l~~-l~~L~~L~l~~~ 649 (929)
|.++...+..+.. +.++..+++..|
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CcccccCChHHhhccccCceEEecCC
Confidence 6665332222333 234555555544
No 86
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=4.5e-05 Score=86.93 Aligned_cols=181 Identities=17% Similarity=0.185 Sum_probs=102.9
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhhhcC------------------CCcEEEEE
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETN------------------KFNVVIWV 199 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv 199 (929)
.+++|. +..++.+...+..+++ +.+.++|+.|+||||+|+.+++....... .|.-.+++
T Consensus 16 ~diiGq--~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 16 AEVAGQ--QHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 678997 6677788888877664 56889999999999999999987631100 11112222
Q ss_pred EECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEE-E
Q 042574 200 TVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLV-I 276 (929)
Q Consensus 200 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~il-v 276 (929)
.......+.++ ++|++ .+...-..+++-++|+|++.... ..+.+...+......+++| +
T Consensus 94 daas~~gvd~i-r~ii~-----------------~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 94 DAASRTGVEET-KEILD-----------------NIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred ecccccCHHHH-HHHHH-----------------HHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEE
Confidence 22122222111 11111 11111113567799999997532 2333332232223345555 5
Q ss_pred EeCcccccccCC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCcc-HHHHHH
Q 042574 277 TTRSLGVSRSMD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLP-LAIVTV 342 (929)
Q Consensus 277 TtR~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~ 342 (929)
||....+..... +..+++.+++.++....+.+.+.... ....++....|++.++|.+ .|+..+
T Consensus 156 Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg---i~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 156 TTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN---INSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred ECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 554444432222 23389999999998888877654432 1223556677999999866 344444
No 87
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=5.4e-05 Score=82.66 Aligned_cols=196 Identities=13% Similarity=0.073 Sum_probs=106.5
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHHhhhcC-CCc-EEEEEEECCCCCHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETN-KFN-VVIWVTVSQPLDLIKLQTEIA 215 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~-~~~wv~~s~~~~~~~~~~~i~ 215 (929)
..++|. +..++.+.+.+.++. ...+.++|+.|+||||+|..++..+--... ... +..-...-.....-...+.|.
T Consensus 19 ~~iiGq--~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~ 96 (365)
T PRK07471 19 TALFGH--AAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIA 96 (365)
T ss_pred hhccCh--HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHH
Confidence 679997 677788888888877 457999999999999999999887732111 000 000000000000001111111
Q ss_pred HHhcCC-------CCC------CccHHHHHHHHHHHHH----hcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEE
Q 042574 216 TALKQS-------LPE------NEDKVRRAGRLSEMLK----AKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVI 276 (929)
Q Consensus 216 ~~l~~~-------~~~------~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilv 276 (929)
..-..+ ... ..-..+.++.+.+.+. .+++.++|+||++... ....+...+..-..++.+|+
T Consensus 97 ~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL 176 (365)
T PRK07471 97 AGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLL 176 (365)
T ss_pred ccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 110000 000 0011233444444432 3567899999997542 22222222222234556666
Q ss_pred EeCcc-cccccC--CcceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHH
Q 042574 277 TTRSL-GVSRSM--DCKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVA 343 (929)
Q Consensus 277 TtR~~-~v~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 343 (929)
+|.+. .+.... .+..+.+.+++.++..+++.+..... ..+....+++.++|.|.....+.
T Consensus 177 ~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~-------~~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 177 VSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL-------PDDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC-------CHHHHHHHHHHcCCCHHHHHHHh
Confidence 66654 332222 23339999999999999998764221 11222678999999998665543
No 88
>PLN03150 hypothetical protein; Provisional
Probab=98.09 E-value=5.4e-06 Score=98.01 Aligned_cols=103 Identities=24% Similarity=0.364 Sum_probs=72.6
Q ss_pred ccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCc-ccCcccccccccceeecccccccccCc-cccccCCCCEEEcc
Q 042574 523 LSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIE-VLPSSVSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLE 600 (929)
Q Consensus 523 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~ 600 (929)
++.|+|++|.....+|..+ .++++|+.|+|++|.+. .+|..++.+++|++|+|++|.....+| .++++++|++|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 6677777776555666664 67777888888777776 677777777778888887776665666 57777778888887
Q ss_pred CCCCc-cccccccCC-CCCCEEEccCCC
Q 042574 601 RTWIE-EVPEGMEML-ENLSHLYLSSPP 626 (929)
Q Consensus 601 ~~~i~-~lp~~i~~l-~~L~~L~l~~~~ 626 (929)
+|.+. .+|..+..+ .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 77666 666665543 355667776664
No 89
>PTZ00202 tuzin; Provisional
Probab=98.08 E-value=4.8e-05 Score=81.58 Aligned_cols=164 Identities=15% Similarity=0.123 Sum_probs=95.9
Q ss_pred CCccccccccccchHHHHHHHHHHhcC---CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHH
Q 042574 133 GLTLTTATLAGKKTKKVVERIWEDLMG---DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIK 209 (929)
Q Consensus 133 ~~~~~~~~~vGr~~~~~~~~l~~~l~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 209 (929)
..|.+...|+|| +.+...+...|.+ +..+++.|+|++|+|||||++.+.... + + ...+++.. +..+
T Consensus 256 ~lPa~~~~FVGR--eaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l----~-~-~qL~vNpr---g~eE 324 (550)
T PTZ00202 256 SAPAVIRQFVSR--EAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE----G-M-PAVFVDVR---GTED 324 (550)
T ss_pred CCCCCccCCCCc--HHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC----C-c-eEEEECCC---CHHH
Confidence 344555889999 6677777777643 235699999999999999999998764 1 1 12333322 6799
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHH----Hh-cCcEEEEEecCCCcCCccccc---cCCCCCCCCcEEEEEeCcc
Q 042574 210 LQTEIATALKQSLPENEDKVRRAGRLSEML----KA-KAKFVLILDDMWEAFPLEEVG---IPEPSEENGCKLVITTRSL 281 (929)
Q Consensus 210 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~-~~~~LlvlDdv~~~~~~~~l~---~~~~~~~~gs~ilvTtR~~ 281 (929)
++..|+.+||.+.. .........+.+.+ .. +++.+||+-= .+-..+..+. ..+.....-|.|++----+
T Consensus 325 lLr~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~l-reg~~l~rvyne~v~la~drr~ch~v~evple 401 (550)
T PTZ00202 325 TLRSVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKL-REGSSLQRVYNEVVALACDRRLCHVVIEVPLE 401 (550)
T ss_pred HHHHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEe-cCCCcHHHHHHHHHHHHccchhheeeeeehHh
Confidence 99999999997422 22223333333333 23 6677777632 2211111100 0111113456777644333
Q ss_pred cccccCCc---ce-EecccCCHHHHHHHHHhhh
Q 042574 282 GVSRSMDC---KE-IGVELLSQEEALNLFLDKV 310 (929)
Q Consensus 282 ~v~~~~~~---~~-~~l~~L~~~~~~~Lf~~~~ 310 (929)
.+...... -. |.+++++.++|.++-.+..
T Consensus 402 slt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 402 SLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 33211111 12 7889999999998876653
No 90
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.08 E-value=4.8e-05 Score=75.71 Aligned_cols=158 Identities=15% Similarity=0.198 Sum_probs=89.4
Q ss_pred HHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhhhc-------------------CCCcEEEEEEE-CCCCCHHHH
Q 042574 152 RIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKET-------------------NKFNVVIWVTV-SQPLDLIKL 210 (929)
Q Consensus 152 ~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~wv~~-s~~~~~~~~ 210 (929)
.+.+.+..+.+ ..+.++|+.|+||||+|+.+........ .+.+. .++.. +....++.+
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHHH
Confidence 45566666665 6899999999999999999988863210 11121 11211 111111111
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEEEeCcc-cccccC
Q 042574 211 QTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVITTRSL-GVSRSM 287 (929)
Q Consensus 211 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~-~v~~~~ 287 (929)
+++.+.+... -..+.+-++|+||+.... ..+.+...+......+.+|++|++. .+....
T Consensus 82 -~~i~~~~~~~-----------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i 143 (188)
T TIGR00678 82 -RELVEFLSRT-----------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTI 143 (188)
T ss_pred -HHHHHHHccC-----------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHH
Confidence 1122211100 012456789999986532 2333333333223455676666543 332222
Q ss_pred C--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccH
Q 042574 288 D--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPL 337 (929)
Q Consensus 288 ~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 337 (929)
. +..+.+.+++.++..+.+.+. + . .++.+..|++.++|.|.
T Consensus 144 ~sr~~~~~~~~~~~~~~~~~l~~~-g--i------~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 144 RSRCQVLPFPPLSEEALLQWLIRQ-G--I------SEEAAELLLALAGGSPG 186 (188)
T ss_pred HhhcEEeeCCCCCHHHHHHHHHHc-C--C------CHHHHHHHHHHcCCCcc
Confidence 1 223899999999999888776 2 1 14568889999999885
No 91
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.07 E-value=3.2e-06 Score=89.43 Aligned_cols=294 Identities=18% Similarity=0.188 Sum_probs=176.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKA 241 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (929)
.+-+.++|.|||||||++-++.. .. ..+=+.+.++....-.+...+.-.....++......... ...+...+ .
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~---~~~~~~~~-~ 86 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSA---VDTLVRRI-G 86 (414)
T ss_pred hheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhcccccccchHH---HHHHHHHH-h
Confidence 57899999999999999999988 42 233345777777777777777777777777655332222 22333343 4
Q ss_pred cCcEEEEEecCCCcCC-ccccccCCCCCCCCcEEEEEeCcccccccCCcceEecccCCHH-HHHHHHHhhhcccCC--CC
Q 042574 242 KAKFVLILDDMWEAFP-LEEVGIPEPSEENGCKLVITTRSLGVSRSMDCKEIGVELLSQE-EALNLFLDKVRISTS--QI 317 (929)
Q Consensus 242 ~~~~LlvlDdv~~~~~-~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~~~~~~~l~~L~~~-~~~~Lf~~~~~~~~~--~~ 317 (929)
.+|.++|+||..+-.+ -..+...+..+...-.|+.|+|...... +.....+.+|+.- ++.++|...+..... ..
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~--ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA--GEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc--ccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 6899999999755321 1111111222233456888888754332 2222677777775 788998776543322 12
Q ss_pred CcchHHHHHHHHHhcCCccHHHHHHHhhhcCCCC---hhHHHHHHHHHhhhhccCCCCchhhhhhHHhhcccCCChhhhh
Q 042574 318 PNLDKEIINSVVEECDGLPLAIVTVASCMRGVDE---IHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDDKVQQ 394 (929)
Q Consensus 318 ~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~---~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~ 394 (929)
.........+|.++.+|.|++|...++..+.-.. .....+....+.................+.+||.-|. .-.+.
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLt-gwe~~ 243 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLT-GWERA 243 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhh-hHHHH
Confidence 3334667888999999999999999988876321 1112222222222211111122456778999999998 67888
Q ss_pred HhhhhccCCCCCccCHHHHHHHHHHcCcccchhcHHHHHHhHHHHHHHHHHccccccccC--CCeEEechHHHHHHHHHh
Q 042574 395 CFLYCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQAKYDRGHTILNRLVNCCLLERAED--GGCVKMHDLIRDMALRIK 472 (929)
Q Consensus 395 cfl~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~--~~~~~mHdlv~~~a~~~~ 472 (929)
.|.-++.|...|... ...|.+.|-... ...-.....+..++++++...-.. ...|+.-+-+|.|+....
T Consensus 244 ~~~rLa~~~g~f~~~----l~~~~a~g~~~~-----~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL 314 (414)
T COG3903 244 LFGRLAVFVGGFDLG----LALAVAAGADVD-----VPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAEL 314 (414)
T ss_pred Hhcchhhhhhhhccc----HHHHHhcCCccc-----cchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 899999888776544 223444432210 011233444667788887765322 134555566666666555
Q ss_pred cc
Q 042574 473 SK 474 (929)
Q Consensus 473 ~~ 474 (929)
.+
T Consensus 315 ~r 316 (414)
T COG3903 315 HR 316 (414)
T ss_pred Hh
Confidence 43
No 92
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.07 E-value=1.1e-05 Score=86.68 Aligned_cols=92 Identities=15% Similarity=0.191 Sum_probs=63.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCC--CCHHHHHHHHHHHhcCCCCCCccHH--H---HHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP--LDLIKLQTEIATALKQSLPENEDKV--R---RAG 233 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~--~---~~~ 233 (929)
....++|+|++|+|||||++.+++... ..+|+..+||.+.+. .++.++++.|...+-....+..... . .+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~--~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAIT--RNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhc--ccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 346899999999999999999999873 347999999998866 7889999988544322211111111 1 111
Q ss_pred -HHHHHHHhcCcEEEEEecCCC
Q 042574 234 -RLSEMLKAKAKFVLILDDMWE 254 (929)
Q Consensus 234 -~l~~~l~~~~~~LlvlDdv~~ 254 (929)
........+++++|++|++..
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 112222368999999999964
No 93
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=7.6e-05 Score=82.17 Aligned_cols=171 Identities=12% Similarity=0.128 Sum_probs=98.4
Q ss_pred ccccccchHHHHHHHHHHhcCCC----------eeEEEEEcCCCChHHHHHHHHHHHHhhhcC-----------------
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDK----------VTKIGVWGMGGIGKTTIMKEINNRLQKETN----------------- 191 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~----------~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----------------- 191 (929)
..++|. +..++.|..++..+. .+.+.++|+.|+||||+|+.++....-...
T Consensus 5 ~~IiGq--~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 5 DDLVGQ--EAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhccCh--HHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 467887 667777888877653 567899999999999999999886522110
Q ss_pred -CCcEEEEEEEC-CCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHH----hcCcEEEEEecCCCcC--Ccccccc
Q 042574 192 -KFNVVIWVTVS-QPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLK----AKAKFVLILDDMWEAF--PLEEVGI 263 (929)
Q Consensus 192 -~f~~~~wv~~s-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~ 263 (929)
|-| +.++... ....+. .++.+.+... .+++-++|+|+++... ....+..
T Consensus 83 ~hpD-~~~i~~~~~~i~i~----------------------~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk 139 (394)
T PRK07940 83 THPD-VRVVAPEGLSIGVD----------------------EVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLK 139 (394)
T ss_pred CCCC-EEEeccccccCCHH----------------------HHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHH
Confidence 111 1111111 111111 1222222221 2455688889997642 1122222
Q ss_pred CCCCCCCCcEEEEEeCc-ccccccCC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHH
Q 042574 264 PEPSEENGCKLVITTRS-LGVSRSMD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIV 340 (929)
Q Consensus 264 ~~~~~~~gs~ilvTtR~-~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 340 (929)
.+.....+..+|++|.+ ..+..... +..+.+.+++.++..+.+.+..+. .++.+..+++.++|.|....
T Consensus 140 ~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~--------~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 140 AVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV--------DPETARRAARASQGHIGRAR 211 (394)
T ss_pred HhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC--------CHHHHHHHHHHcCCCHHHHH
Confidence 22212334555555554 44432222 333999999999999888754321 13557789999999997554
Q ss_pred HH
Q 042574 341 TV 342 (929)
Q Consensus 341 ~~ 342 (929)
.+
T Consensus 212 ~l 213 (394)
T PRK07940 212 RL 213 (394)
T ss_pred HH
Confidence 43
No 94
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.04 E-value=5.5e-05 Score=85.25 Aligned_cols=187 Identities=14% Similarity=0.130 Sum_probs=109.6
Q ss_pred cccccchHHHHHHHHHHhcCC--CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 140 TLAGKKTKKVVERIWEDLMGD--KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 140 ~~vGr~~~~~~~~l~~~l~~~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
.++|..-............++ ...-+.|+|..|+|||+|++++++..... ..-..+++++. .++...+...
T Consensus 117 Fv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~-~~~~~v~yv~~------~~f~~~~~~~ 189 (450)
T PRK14087 117 FVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESN-FSDLKVSYMSG------DEFARKAVDI 189 (450)
T ss_pred ccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEH------HHHHHHHHHH
Confidence 356753222333333333332 23468999999999999999999976322 22234556543 4566666666
Q ss_pred hcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC---C-ccccccCCCC-CCCCcEEEEEeCcc---------cc
Q 042574 218 LKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF---P-LEEVGIPEPS-EENGCKLVITTRSL---------GV 283 (929)
Q Consensus 218 l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---~-~~~l~~~~~~-~~~gs~ilvTtR~~---------~v 283 (929)
++... .....+.+.+ ...-+||+||+.... . .+.+...+.. ...|..||+|+... .+
T Consensus 190 l~~~~-------~~~~~~~~~~--~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL 260 (450)
T PRK14087 190 LQKTH-------KEIEQFKNEI--CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRL 260 (450)
T ss_pred HHHhh-------hHHHHHHHHh--ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHH
Confidence 54210 1122333333 235588999996432 1 1222221111 13455788887643 22
Q ss_pred cccCCcce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHH
Q 042574 284 SRSMDCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVA 343 (929)
Q Consensus 284 ~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 343 (929)
..++.... +.+++++.++-.+++.+++..... ...-.++++.-|++.++|.|-.+..+.
T Consensus 261 ~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl-~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 261 ITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNI-KQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHhCCceeccCCcCHHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 23344344 789999999999999988754321 012346788899999999987665544
No 95
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.03 E-value=9.2e-05 Score=82.17 Aligned_cols=180 Identities=13% Similarity=0.209 Sum_probs=104.0
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhhhc-------------------CCCcEEEE
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKET-------------------NKFNVVIW 198 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~~f~~~~w 198 (929)
.+++|. +..++.+.+++.++.. +.+.++|++|+||||+|+.+........ .+++. ++
T Consensus 14 ~~iig~--~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~ 90 (355)
T TIGR02397 14 EDVIGQ--EHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IE 90 (355)
T ss_pred hhccCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EE
Confidence 678997 6778888888877664 5789999999999999999988763110 02222 22
Q ss_pred EEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCc--CCccccccCCCCCCCCcEEEE
Q 042574 199 VTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEA--FPLEEVGIPEPSEENGCKLVI 276 (929)
Q Consensus 199 v~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilv 276 (929)
+..+...+... .+++...+... . ..+++-++|+|++... .....+...+......+.+|+
T Consensus 91 ~~~~~~~~~~~-~~~l~~~~~~~----------------p-~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 91 IDAASNNGVDD-IREILDNVKYA----------------P-SSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred eeccccCCHHH-HHHHHHHHhcC----------------c-ccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEE
Confidence 22211111111 11222221100 0 0234568899998653 223333322322234566666
Q ss_pred EeCccc-ccccCC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHH
Q 042574 277 TTRSLG-VSRSMD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTV 342 (929)
Q Consensus 277 TtR~~~-v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 342 (929)
+|.+.. +..... +..+++.++++++..+.+...+..... .-.++.+..+++.++|.|..+...
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~---~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI---KIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCChHHHHHH
Confidence 665432 222111 222888999999999988876654322 112467788999999998655443
No 96
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.03 E-value=3.5e-05 Score=91.14 Aligned_cols=168 Identities=19% Similarity=0.285 Sum_probs=93.8
Q ss_pred ccccccchHHHH---HHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHH
Q 042574 139 ATLAGKKTKKVV---ERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIA 215 (929)
Q Consensus 139 ~~~vGr~~~~~~---~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 215 (929)
.+++|++ ..+ ..+...+..+....+.|+|++|+||||+|+.+++... ..|. .+..+. ..+.++ +
T Consensus 28 dd~vGQe--~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~---~~f~---~lna~~-~~i~di-r--- 94 (725)
T PRK13341 28 EEFVGQD--HILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR---AHFS---SLNAVL-AGVKDL-R--- 94 (725)
T ss_pred HHhcCcH--HHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc---Ccce---eehhhh-hhhHHH-H---
Confidence 6789973 333 3466667777777889999999999999999998752 2331 111110 011110 0
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHHH-hcCcEEEEEecCCCc--CCccccccCCCCCCCCcEEEEE--eCccc--ccccCC
Q 042574 216 TALKQSLPENEDKVRRAGRLSEMLK-AKAKFVLILDDMWEA--FPLEEVGIPEPSEENGCKLVIT--TRSLG--VSRSMD 288 (929)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilvT--tR~~~--v~~~~~ 288 (929)
.........+. .+++.+|||||++.- ...+.+...+ ..|+.++|+ |++.. +.....
T Consensus 95 --------------~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL~ 157 (725)
T PRK13341 95 --------------AEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKALV 157 (725)
T ss_pred --------------HHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHhh
Confidence 01111111111 246789999999753 2233333222 235555553 33321 211111
Q ss_pred --cceEecccCCHHHHHHHHHhhhcccC----CCCCcchHHHHHHHHHhcCCcc
Q 042574 289 --CKEIGVELLSQEEALNLFLDKVRIST----SQIPNLDKEIINSVVEECDGLP 336 (929)
Q Consensus 289 --~~~~~l~~L~~~~~~~Lf~~~~~~~~----~~~~~~~~~~~~~i~~~c~g~P 336 (929)
+..+.+++|+.++...++.+.+.... .....-.++....|++.+.|.-
T Consensus 158 SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 158 SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 22289999999999999988764210 0011223566778888888764
No 97
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=7.3e-05 Score=86.58 Aligned_cols=190 Identities=16% Similarity=0.188 Sum_probs=103.7
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
.++||. +..++.|...+..+++ +.+.++|+.|+||||+|+.+++.+..... .. +.....-.....|...
T Consensus 16 ~divGQ--e~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~-~~-------~~pCg~C~~C~~i~~g 85 (647)
T PRK07994 16 AEVVGQ--EHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETG-IT-------ATPCGECDNCREIEQG 85 (647)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccC-CC-------CCCCCCCHHHHHHHcC
Confidence 678998 6677788888877764 56789999999999999999888732110 00 0000000111111110
Q ss_pred hcCC---CCCC-ccHHHHHHHHHHHH----HhcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEE-EEeCccccccc
Q 042574 218 LKQS---LPEN-EDKVRRAGRLSEML----KAKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLV-ITTRSLGVSRS 286 (929)
Q Consensus 218 l~~~---~~~~-~~~~~~~~~l~~~l----~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~il-vTtR~~~v~~~ 286 (929)
-..+ .... ....+.++.+...+ ..+++-++|+|++.... ..+.+...+..-....++| +||....+...
T Consensus 86 ~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~T 165 (647)
T PRK07994 86 RFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (647)
T ss_pred CCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchH
Confidence 0000 0000 01111122222222 13567799999997532 2333322222112344444 45554544322
Q ss_pred C--CcceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHH
Q 042574 287 M--DCKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVT 341 (929)
Q Consensus 287 ~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 341 (929)
. .+..+.+.+++.++....+.+.+..... ...++....|++.++|.+--+..
T Consensus 166 I~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i---~~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 166 ILSRCLQFHLKALDVEQIRQQLEHILQAEQI---PFEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred HHhhheEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 2 2334999999999999999877643321 12345667899999998854433
No 98
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=7.5e-05 Score=86.05 Aligned_cols=175 Identities=14% Similarity=0.188 Sum_probs=101.8
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhhhcC------------------CCcEEEEE
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETN------------------KFNVVIWV 199 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv 199 (929)
.+++|+ +..++.|..++..+++ +.+.++|+.|+||||+|+.+++.+..... .|.-++.+
T Consensus 16 ddIIGQ--e~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEi 93 (709)
T PRK08691 16 ADLVGQ--EHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEI 93 (709)
T ss_pred HHHcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEE
Confidence 678998 6777888888887764 57899999999999999999887521100 00001112
Q ss_pred EECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH----HhcCcEEEEEecCCCcCC--ccccccCCCCCCCCcE
Q 042574 200 TVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEML----KAKAKFVLILDDMWEAFP--LEEVGIPEPSEENGCK 273 (929)
Q Consensus 200 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~ 273 (929)
..+....+. .+..+.... ..+++-++|+|++..... ...+...+......++
T Consensus 94 daAs~~gVd----------------------~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~ 151 (709)
T PRK08691 94 DAASNTGID----------------------NIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (709)
T ss_pred eccccCCHH----------------------HHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcE
Confidence 211111111 111222111 124667899999975321 2222222221123456
Q ss_pred EEEEeCc-ccccccC--CcceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHH
Q 042574 274 LVITTRS-LGVSRSM--DCKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIV 340 (929)
Q Consensus 274 ilvTtR~-~~v~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 340 (929)
+|++|.+ ..+.... .+..+.+.+++.++....+.+.+..... ....+.+..|++.++|.+.-+.
T Consensus 152 fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi---~id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 152 FILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI---AYEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred EEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHHhCCCHHHHH
Confidence 6666643 3332211 1222888999999999999887654432 1235567889999999884443
No 99
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.0001 Score=82.81 Aligned_cols=178 Identities=15% Similarity=0.190 Sum_probs=103.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCee-EEEEEcCCCChHHHHHHHHHHHHhhhc------------------CCCcEEEEE
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVT-KIGVWGMGGIGKTTIMKEINNRLQKET------------------NKFNVVIWV 199 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 199 (929)
.+++|. +..++.+.+.+..+.+. .+.++|+.|+||||+|+.++....-.. +.+.-++.+
T Consensus 13 ~dliGQ--e~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ei 90 (491)
T PRK14964 13 KDLVGQ--DVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEI 90 (491)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEE
Confidence 678997 66677777778777754 899999999999999999987542110 011113334
Q ss_pred EECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEEE
Q 042574 200 TVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVIT 277 (929)
Q Consensus 200 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvT 277 (929)
..+...++.++. +|.+..... - ..+++-++|+|++.... ..+.+...+..-...+++|++
T Consensus 91 daas~~~vddIR-~Iie~~~~~----------------P-~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 91 DAASNTSVDDIK-VILENSCYL----------------P-ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred ecccCCCHHHHH-HHHHHHHhc----------------c-ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 433333333321 222211100 0 02456789999996532 233332222222345566655
Q ss_pred e-CcccccccCC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHH
Q 042574 278 T-RSLGVSRSMD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAI 339 (929)
Q Consensus 278 t-R~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 339 (929)
| ....+..... +..+.+.+++.++....+.+.+..... .-.++.+..|++.++|.+-.+
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi---~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI---EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 5 4444433222 223899999999999999887755432 223556778999998877433
No 100
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.01 E-value=2.3e-06 Score=100.48 Aligned_cols=131 Identities=21% Similarity=0.250 Sum_probs=94.9
Q ss_pred ccccEEEcccCCCC--cCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCccccccccccee
Q 042574 497 ENLERVSLMDNHIE--EIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSL 574 (929)
Q Consensus 497 ~~l~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L 574 (929)
.++++|++++...- ..+......+|+|++|.+++-.+...--...+.++++|+.||+|+++++.+ ..++.|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 46888888776321 233334557899999999986543332344567999999999999999988 689999999999
Q ss_pred ecccccccc--cCccccccCCCCEEEccCCCCccccc-------cccCCCCCCEEEccCCCCc
Q 042574 575 LLRWCRRLK--RVPSVAKLLALQYLDLERTWIEEVPE-------GMEMLENLSHLYLSSPPLK 628 (929)
Q Consensus 575 ~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~i~~lp~-------~i~~l~~L~~L~l~~~~~~ 628 (929)
.+++=.... .+-.+.+|++|++||++.......+. .-..|++||.||.+++.+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 998643222 12268999999999999874443321 1124899999999987654
No 101
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.00 E-value=5e-05 Score=78.20 Aligned_cols=171 Identities=11% Similarity=0.137 Sum_probs=95.8
Q ss_pred cccc-ccchHHHHHHHHHHhcC-CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHH
Q 042574 139 ATLA-GKKTKKVVERIWEDLMG-DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIAT 216 (929)
Q Consensus 139 ~~~v-Gr~~~~~~~~l~~~l~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 216 (929)
.+|+ |. .+..+..+.++... .....+.|+|..|+|||+||+.+++.... ... ...+++..+... .
T Consensus 18 d~f~~~~-~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~--~~~-~~~~i~~~~~~~------~--- 84 (227)
T PRK08903 18 DNFVAGE-NAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASY--GGR-NARYLDAASPLL------A--- 84 (227)
T ss_pred cccccCC-cHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHh--CCC-cEEEEehHHhHH------H---
Confidence 4444 43 23444555554442 33567899999999999999999997632 222 344554432110 0
Q ss_pred HhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC--ccccccCCCC-CCCCc-EEEEEeCcccccc-------
Q 042574 217 ALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP--LEEVGIPEPS-EENGC-KLVITTRSLGVSR------- 285 (929)
Q Consensus 217 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~--~~~l~~~~~~-~~~gs-~ilvTtR~~~v~~------- 285 (929)
+ ... ...-+||+||+..... .+.+...+.. ...+. .||+|++......
T Consensus 85 -~------------------~~~--~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~ 143 (227)
T PRK08903 85 -F------------------DFD--PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLR 143 (227)
T ss_pred -H------------------hhc--ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHH
Confidence 0 011 1234788999965322 1222222211 12333 4667766433221
Q ss_pred -cCCcce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHHhhh
Q 042574 286 -SMDCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVASCM 346 (929)
Q Consensus 286 -~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 346 (929)
.+.... ++++++++++-..++.+.+.... ..-.++..+.+++.+.|.+..+..+...+
T Consensus 144 sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~---v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 144 TRLGWGLVYELKPLSDADKIAALKAAAAERG---LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHhcCeEEEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 222223 89999999887777766443321 12235677888888999998877665544
No 102
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.98 E-value=1.1e-05 Score=87.06 Aligned_cols=21 Identities=33% Similarity=0.706 Sum_probs=13.9
Q ss_pred CCccEEEEeccCCCccccCCCC
Q 042574 862 NSLQEIKVRGCPKLKRLSLSLP 883 (929)
Q Consensus 862 p~L~~L~I~~C~~L~~lP~~l~ 883 (929)
++|++|.|.+|..+. +|..+|
T Consensus 156 sSLk~L~Is~c~~i~-LP~~LP 176 (426)
T PRK15386 156 PSLKTLSLTGCSNII-LPEKLP 176 (426)
T ss_pred CcccEEEecCCCccc-Cccccc
Confidence 578888888888664 444333
No 103
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=3.9e-07 Score=90.86 Aligned_cols=60 Identities=22% Similarity=0.201 Sum_probs=38.0
Q ss_pred ceeEEEEecCCCccccchhchhhhcCCccEEEEecCcchhhhhccCcchhhhhhccccccccccCCCcceeecccc
Q 042574 771 DLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDSIKEIIAVEDEETEKELATNTIINTVTLPRLKKLRFYFL 846 (929)
Q Consensus 771 ~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~ 846 (929)
+|.+|+|++|..+++ ...-.+-.++.|++|.++.|..+--- ........|+|.+|++.+|
T Consensus 314 ~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~---------------~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIPE---------------TLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCChH---------------HeeeeccCcceEEEEeccc
Confidence 888888888887776 22223446778888888888655210 0012235677777777765
No 104
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=6.8e-05 Score=85.50 Aligned_cols=191 Identities=14% Similarity=0.166 Sum_probs=100.4
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
.+++|+ +..++.+.+++..+. .+.+.++|+.|+||||+|+.+++.+... + |... ...+.-...+.+...
T Consensus 16 ~dIIGQ--e~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~-~------~~~~-~~Cg~C~sCr~i~~~ 85 (605)
T PRK05896 16 KQIIGQ--ELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL-N------PKDG-DCCNSCSVCESINTN 85 (605)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC-C------CCCC-CCCcccHHHHHHHcC
Confidence 678998 677788888887765 4579999999999999999999886311 1 1100 000001111111110
Q ss_pred hcCCC---CCC-ccHHHHHHHHHHHHH----hcCcEEEEEecCCCc--CCccccccCCCCCCCCcEEEE-EeCccccccc
Q 042574 218 LKQSL---PEN-EDKVRRAGRLSEMLK----AKAKFVLILDDMWEA--FPLEEVGIPEPSEENGCKLVI-TTRSLGVSRS 286 (929)
Q Consensus 218 l~~~~---~~~-~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilv-TtR~~~v~~~ 286 (929)
..... ... ......++.+..... .+++-++|+|+++.. .....+...+......+.+|+ |+....+...
T Consensus 86 ~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~T 165 (605)
T PRK05896 86 QSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLT 165 (605)
T ss_pred CCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHH
Confidence 00000 000 001111122222111 123457999999753 222333222221123445554 4444344321
Q ss_pred C--CcceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccH-HHHHH
Q 042574 287 M--DCKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPL-AIVTV 342 (929)
Q Consensus 287 ~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~ 342 (929)
. .+..+++.++++++....+...+..... .-.++.+..+++.++|.+- |+..+
T Consensus 166 I~SRcq~ieF~~Ls~~eL~~~L~~il~kegi---~Is~eal~~La~lS~GdlR~AlnlL 221 (605)
T PRK05896 166 IISRCQRYNFKKLNNSELQELLKSIAKKEKI---KIEDNAIDKIADLADGSLRDGLSIL 221 (605)
T ss_pred HHhhhhhcccCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 1 1233899999999999888876644321 1124567789999999764 44333
No 105
>PRK05642 DNA replication initiation factor; Validated
Probab=97.96 E-value=7.4e-05 Score=76.84 Aligned_cols=148 Identities=16% Similarity=0.213 Sum_probs=87.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKA 241 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (929)
...+.|+|..|+|||.||+.+++.... . ...++|++..+ +... ...+.+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~-~--~~~v~y~~~~~------~~~~------------------~~~~~~~~~~ 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQ-R--GEPAVYLPLAE------LLDR------------------GPELLDNLEQ 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh-C--CCcEEEeeHHH------HHhh------------------hHHHHHhhhh
Confidence 367899999999999999999987632 2 23467776432 1110 0123333322
Q ss_pred cCcEEEEEecCCCc---CCccc-cccCCCC-CCCCcEEEEEeCccc---------ccccCCcce-EecccCCHHHHHHHH
Q 042574 242 KAKFVLILDDMWEA---FPLEE-VGIPEPS-EENGCKLVITTRSLG---------VSRSMDCKE-IGVELLSQEEALNLF 306 (929)
Q Consensus 242 ~~~~LlvlDdv~~~---~~~~~-l~~~~~~-~~~gs~ilvTtR~~~---------v~~~~~~~~-~~l~~L~~~~~~~Lf 306 (929)
-=+||+||+... ..|+. +...+.. ...|..+|+||+... +.+++.... +++++++.++-.+++
T Consensus 98 --~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 98 --YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred --CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 126889999632 23332 2222211 134678999887532 122233334 889999999999999
Q ss_pred HhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHH
Q 042574 307 LDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVT 341 (929)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 341 (929)
+.++....- .-.+++..-|++.+.|..-++..
T Consensus 176 ~~ka~~~~~---~l~~ev~~~L~~~~~~d~r~l~~ 207 (234)
T PRK05642 176 QLRASRRGL---HLTDEVGHFILTRGTRSMSALFD 207 (234)
T ss_pred HHHHHHcCC---CCCHHHHHHHHHhcCCCHHHHHH
Confidence 866543211 12256777788888776544443
No 106
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.0001 Score=85.31 Aligned_cols=193 Identities=14% Similarity=0.183 Sum_probs=103.1
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhhhcCC-CcEEEEEEECCCCCHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNK-FNVVIWVTVSQPLDLIKLQTEIAT 216 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~-f~~~~wv~~s~~~~~~~~~~~i~~ 216 (929)
.+++|. +..+..|.+++..+++ ..+.++|+.|+||||+|+.+++.+...... ...... ...+.-.....|..
T Consensus 16 ~dviGQ--e~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i~~ 89 (618)
T PRK14951 16 SEMVGQ--EHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDIDS 89 (618)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHHHc
Confidence 678997 6677888888887775 677999999999999999998876311000 000000 00001111111110
Q ss_pred HhcCC---CCC-CccHHHHHHHHHHHHH----hcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEEEe-Ccccccc
Q 042574 217 ALKQS---LPE-NEDKVRRAGRLSEMLK----AKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVITT-RSLGVSR 285 (929)
Q Consensus 217 ~l~~~---~~~-~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTt-R~~~v~~ 285 (929)
.-..+ ... .....+.+..+..... .++.-++|||+++... ..+.+...+.......++|++| ....+..
T Consensus 90 g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 90 GRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred CCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhH
Confidence 00000 000 0001111222222221 2456688999998632 2333333332223345555554 4333332
Q ss_pred cC--CcceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHH
Q 042574 286 SM--DCKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIV 340 (929)
Q Consensus 286 ~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 340 (929)
.. .+..+++.+++.++..+.+.+.+...+. ....+....|++.++|.+--+.
T Consensus 170 TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi---~ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 170 TVLSRCLQFNLRPMAPETVLEHLTQVLAAENV---PAEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred HHHHhceeeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 11 2233899999999999999887654432 1234567788999998874443
No 107
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=9.2e-05 Score=82.68 Aligned_cols=196 Identities=12% Similarity=0.170 Sum_probs=104.4
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEE-ECCCCCHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT-VSQPLDLIKLQTEIAT 216 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~ 216 (929)
.+++|. +..++.|..++.++++ ..+.++|+.|+||||+|+.+++...-. ...+...|.. .....+.-...+.+..
T Consensus 16 ~eiiGq--~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~-~~~~~~~~~~~~~~~c~~c~~c~~~~~ 92 (397)
T PRK14955 16 ADITAQ--EHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ-RMIDDADYLQEVTEPCGECESCRDFDA 92 (397)
T ss_pred hhccCh--HHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC-CCcCcccccccCCCCCCCCHHHHHHhc
Confidence 678997 6677788888887775 468899999999999999999877321 1110000110 0000000011111111
Q ss_pred HhcCCC---CC-CccHHHHHHHHHHHHH----hcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEEEe-Ccccccc
Q 042574 217 ALKQSL---PE-NEDKVRRAGRLSEMLK----AKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVITT-RSLGVSR 285 (929)
Q Consensus 217 ~l~~~~---~~-~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTt-R~~~v~~ 285 (929)
....+. .. .......+..+.+.+. .+++-++|+|++.... .++.+...+......+.+|++| +...+..
T Consensus 93 ~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~ 172 (397)
T PRK14955 93 GTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (397)
T ss_pred CCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHH
Confidence 000000 00 0010112222223221 2456788999987542 3333333333223455665554 4444432
Q ss_pred cCC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHH
Q 042574 286 SMD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIV 340 (929)
Q Consensus 286 ~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 340 (929)
... +..+++.++++++..+.+...+.... ..-.++.+..+++.++|.+--+.
T Consensus 173 tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g---~~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 173 TIASRCQRFNFKRIPLEEIQQQLQGICEAEG---ISVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHH
Confidence 222 12288999999999988887664332 12235678889999999875443
No 108
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.0002 Score=79.64 Aligned_cols=177 Identities=8% Similarity=0.189 Sum_probs=98.6
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhhh-----cCCCcE-EEEEEECCCCCHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKE-----TNKFNV-VIWVTVSQPLDLIKLQ 211 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~-----~~~f~~-~~wv~~s~~~~~~~~~ 211 (929)
.+++|. +..++.+.+.+.++.. +.+.++|++|+||||+|+.+.+..... ...|.. ++-+......++..+
T Consensus 17 ~~iig~--~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i- 93 (367)
T PRK14970 17 DDVVGQ--SHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDDI- 93 (367)
T ss_pred HhcCCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHHH-
Confidence 678897 6677888888877664 589999999999999999998876321 011211 111111111111111
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEEEe-CcccccccCC
Q 042574 212 TEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVITT-RSLGVSRSMD 288 (929)
Q Consensus 212 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTt-R~~~v~~~~~ 288 (929)
..+++.+... .. .+++-++|+|++.... .++.+...+......+.+|++| +...+.....
T Consensus 94 ~~l~~~~~~~----------------p~-~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~ 156 (367)
T PRK14970 94 RNLIDQVRIP----------------PQ-TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156 (367)
T ss_pred HHHHHHHhhc----------------cc-cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHH
Confidence 1122211100 00 1345689999986432 2333322222112344555544 4333332211
Q ss_pred --cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHH
Q 042574 289 --CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLA 338 (929)
Q Consensus 289 --~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 338 (929)
+..++..++++++....+...+..... .-.++.+..+++.++|.+-.
T Consensus 157 sr~~~v~~~~~~~~~l~~~l~~~~~~~g~---~i~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGI---KFEDDALHIIAQKADGALRD 205 (367)
T ss_pred hcceeEecCCccHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhCCCCHHH
Confidence 222889999999999888876654322 12256778888889886643
No 109
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.90 E-value=8.6e-05 Score=82.19 Aligned_cols=170 Identities=17% Similarity=0.221 Sum_probs=92.6
Q ss_pred ccccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCC
Q 042574 139 ATLAGKKTKKVVERIWEDLM----G---------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 205 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~----~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 205 (929)
..+.|. +..++++.+.+. . ...+-|.++|++|+|||++|+.+++... ..| +.+.
T Consensus 122 ~di~Gl--~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~---~~~-----~~v~--- 188 (364)
T TIGR01242 122 EDIGGL--EEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN---ATF-----IRVV--- 188 (364)
T ss_pred HHhCCh--HHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC---CCE-----Eecc---
Confidence 567887 556666655542 2 1245699999999999999999999762 222 2221
Q ss_pred CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC----------------ccccccCCC--C
Q 042574 206 DLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP----------------LEEVGIPEP--S 267 (929)
Q Consensus 206 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~ 267 (929)
...+.... ++ ........+.+......+.+|+|||++.... +..+...+. .
T Consensus 189 -~~~l~~~~---~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~ 257 (364)
T TIGR01242 189 -GSELVRKY---IG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD 257 (364)
T ss_pred -hHHHHHHh---hh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC
Confidence 11111110 00 1112222333333344678999999974210 111111111 1
Q ss_pred CCCCcEEEEEeCcccc-----cccCCcce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCcc
Q 042574 268 EENGCKLVITTRSLGV-----SRSMDCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLP 336 (929)
Q Consensus 268 ~~~gs~ilvTtR~~~v-----~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 336 (929)
...+.+||.||...+. .+...... +.+...+.++..++|..++.......... ...+++.+.|..
T Consensus 258 ~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 258 PRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 1246678888875322 11111223 88999999999999988764432111112 355777777654
No 110
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.89 E-value=0.0002 Score=74.06 Aligned_cols=192 Identities=15% Similarity=0.160 Sum_probs=113.4
Q ss_pred HHHHHHHHHhcC---CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCC---CcEEEEEEECCCCCHHHHHHHHHHHhcCC
Q 042574 148 KVVERIWEDLMG---DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNK---FNVVIWVTVSQPLDLIKLQTEIATALKQS 221 (929)
Q Consensus 148 ~~~~~l~~~l~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 221 (929)
+.++++.+.+.. ...+-+.|||.+|+|||++++++...+...... --.++.|.....++...+...|+.+++.+
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 344555555543 335679999999999999999999877332211 11477888888999999999999999998
Q ss_pred CCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC---------ccccccCCCCCCCCcEEEEEeCc--------cccc
Q 042574 222 LPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP---------LEEVGIPEPSEENGCKLVITTRS--------LGVS 284 (929)
Q Consensus 222 ~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~---------~~~l~~~~~~~~~gs~ilvTtR~--------~~v~ 284 (929)
................-+..-+--+||+|++.+.-. +..+ ..+.+.-.-+-|.|-|+. .+.+
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~L-K~L~NeL~ipiV~vGt~~A~~al~~D~QLa 202 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNAL-KFLGNELQIPIVGVGTREAYRALRTDPQLA 202 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHH-HHHhhccCCCeEEeccHHHHHHhccCHHHH
Confidence 765544444443444444444567899999975211 1111 111112234456666654 2333
Q ss_pred ccCCcceEecccCCHH-HHHHHHHhhhcccC-C-CCCcchHHHHHHHHHhcCCccHHHHHH
Q 042574 285 RSMDCKEIGVELLSQE-EALNLFLDKVRIST-S-QIPNLDKEIINSVVEECDGLPLAIVTV 342 (929)
Q Consensus 285 ~~~~~~~~~l~~L~~~-~~~~Lf~~~~~~~~-~-~~~~~~~~~~~~i~~~c~g~Plai~~~ 342 (929)
..+.. +.++.-..+ +...|+......-. . ...-..+++++.|...++|+.--+..+
T Consensus 203 ~RF~~--~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 203 SRFEP--FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred hccCC--ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 33322 444444333 34444433221110 0 112345789999999999987555443
No 111
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00021 Score=82.32 Aligned_cols=172 Identities=15% Similarity=0.195 Sum_probs=99.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhhhcC------------------CCcEEEEE
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETN------------------KFNVVIWV 199 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv 199 (929)
.+++|. +..++.+..++..+++ +.+.++|+.|+||||+|+.++........ .|.-++++
T Consensus 16 ~divGq--~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei 93 (527)
T PRK14969 16 SELVGQ--EHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEV 93 (527)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEe
Confidence 678997 6677788888877664 56789999999999999999887621110 01111222
Q ss_pred EECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHH----hcCcEEEEEecCCCcC--CccccccCCCCCCCCcE
Q 042574 200 TVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLK----AKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCK 273 (929)
Q Consensus 200 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ 273 (929)
..+....+. .+..+..... .+++-++|+|+++... ..+.+...+......+.
T Consensus 94 ~~~~~~~vd----------------------~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~ 151 (527)
T PRK14969 94 DAASNTQVD----------------------AMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVK 151 (527)
T ss_pred eccccCCHH----------------------HHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEE
Confidence 211111111 1112222211 2456789999997542 22223222222223455
Q ss_pred EEEEe-CcccccccCC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccH
Q 042574 274 LVITT-RSLGVSRSMD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPL 337 (929)
Q Consensus 274 ilvTt-R~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 337 (929)
+|++| ..+.+..... +..+++.+++.++..+.+.+.+..... ...++.+..|++.++|.+-
T Consensus 152 fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi---~~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 152 FILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI---PFDATALQLLARAAAGSMR 215 (527)
T ss_pred EEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHH
Confidence 55544 4443332222 222899999999999888776644321 1234566789999999874
No 112
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00017 Score=82.37 Aligned_cols=178 Identities=13% Similarity=0.157 Sum_probs=101.1
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhhhc------------------CCCcEEEEE
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKET------------------NKFNVVIWV 199 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------~~f~~~~wv 199 (929)
.++||. +..++.|..++..+.+ ..+.++|+.|+||||+|+.+++...... +.|.-++.+
T Consensus 16 ~divGq--~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ei 93 (509)
T PRK14958 16 QEVIGQ--APVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEV 93 (509)
T ss_pred HHhcCC--HHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEE
Confidence 678998 6777888888877764 5679999999999999999998763211 011112233
Q ss_pred EECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCc--CCccccccCCCCCCCCcEEEEE
Q 042574 200 TVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEA--FPLEEVGIPEPSEENGCKLVIT 277 (929)
Q Consensus 200 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilvT 277 (929)
..+....+.++ +++++.+.. .-..++.-++|+|++... ...+.+...+......+++|++
T Consensus 94 daas~~~v~~i-R~l~~~~~~-----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 94 DAASRTKVEDT-RELLDNIPY-----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred cccccCCHHHH-HHHHHHHhh-----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEE
Confidence 32222222222 112221110 001356678999999753 2222222222222234566655
Q ss_pred e-CcccccccCC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHH
Q 042574 278 T-RSLGVSRSMD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAI 339 (929)
Q Consensus 278 t-R~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 339 (929)
| ....+..... +..+++.+++.++....+.+.+..... ...++....|++.++|.+--+
T Consensus 156 ttd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi---~~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 156 TTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV---EFENAALDLLARAANGSVRDA 217 (509)
T ss_pred ECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHH
Confidence 4 4333332221 222889999999988877766544322 112445677888999887444
No 113
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.84 E-value=7.1e-07 Score=99.22 Aligned_cols=121 Identities=26% Similarity=0.296 Sum_probs=63.4
Q ss_pred CCcEEEecCCCCcccCcccccccccceeecccccccccCccccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCC
Q 042574 547 GLKVLNLSHTNIEVLPSSVSNLTNLRSLLLRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSP 625 (929)
Q Consensus 547 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~ 625 (929)
.|.+.++++|.+..+-.++.-+++|+.|+|+.|+ ......+..|++|++|||++|.+..+|.- ...++ |+.|.+++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhhHHHHhcccccccccccchhccccccchhhhh-heeeeeccc
Confidence 3455555555555555555556666666666652 23333555666666666666666555542 22222 666666666
Q ss_pred CCccCCCCccCCCCCccEEEeecCCchhcccHHHHhcccccccEeEE
Q 042574 626 PLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDGLDSFEG 672 (929)
Q Consensus 626 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~ 672 (929)
.++.+.. +.+|++|+.|++++|-......+.-+..|. .|..|.+
T Consensus 243 ~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs-~L~~L~L 286 (1096)
T KOG1859|consen 243 ALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLS-SLIVLWL 286 (1096)
T ss_pred HHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHH-HHHHHhh
Confidence 5555432 456666666666655433333344444444 4444433
No 114
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.84 E-value=0.00029 Score=79.35 Aligned_cols=178 Identities=18% Similarity=0.248 Sum_probs=101.5
Q ss_pred ccccchHHHHHHHHHHhcCC--CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHh
Q 042574 141 LAGKKTKKVVERIWEDLMGD--KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATAL 218 (929)
Q Consensus 141 ~vGr~~~~~~~~l~~~l~~~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 218 (929)
++|..-......+.+..... ....+.|+|+.|+|||+||+++++..... ..-..++|+++ .++...+...+
T Consensus 113 i~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~-~~~~~v~yi~~------~~~~~~~~~~~ 185 (405)
T TIGR00362 113 VVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILEN-NPNAKVVYVSS------EKFTNDFVNAL 185 (405)
T ss_pred ccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHh-CCCCcEEEEEH------HHHHHHHHHHH
Confidence 56754332333444443332 23568999999999999999999987432 21234566643 33444455444
Q ss_pred cCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC---c-cccccCCCC-CCCCcEEEEEeCcc---------ccc
Q 042574 219 KQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP---L-EEVGIPEPS-EENGCKLVITTRSL---------GVS 284 (929)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~---~-~~l~~~~~~-~~~gs~ilvTtR~~---------~v~ 284 (929)
... . ...+.+.+. +.-+|||||+..... + +.+...+.. ...|..+|+||... .+.
T Consensus 186 ~~~-----~----~~~~~~~~~--~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~ 254 (405)
T TIGR00362 186 RNN-----K----MEEFKEKYR--SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLR 254 (405)
T ss_pred HcC-----C----HHHHHHHHH--hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhh
Confidence 321 1 112333332 234889999974211 1 122211110 12355688888642 123
Q ss_pred ccCCcce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHH
Q 042574 285 RSMDCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAI 339 (929)
Q Consensus 285 ~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 339 (929)
.++.... +.+++.+.++-..++.+.+..... .-.+++...|++.+.|..-.+
T Consensus 255 SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~---~l~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 255 SRFEWGLVVDIEPPDLETRLAILQKKAEEEGL---ELPDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred hhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhcCCCHHHH
Confidence 3444434 889999999999999988765422 223567777888888776543
No 115
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00026 Score=84.96 Aligned_cols=173 Identities=13% Similarity=0.110 Sum_probs=101.4
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhhhcC---------------------CCcEE
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETN---------------------KFNVV 196 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---------------------~f~~~ 196 (929)
.+++|. +..++.|..++.++++ +.+.++|+.|+||||+|+.+.+.+.-... +++ +
T Consensus 15 ~eiiGq--e~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v 91 (824)
T PRK07764 15 AEVIGQ--EHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-V 91 (824)
T ss_pred HHhcCc--HHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-E
Confidence 678997 6677788888887765 56899999999999999999988732110 111 1
Q ss_pred EEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH----HhcCcEEEEEecCCCcC--CccccccCCCCCCC
Q 042574 197 IWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEML----KAKAKFVLILDDMWEAF--PLEEVGIPEPSEEN 270 (929)
Q Consensus 197 ~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~ 270 (929)
+++.......+.++ +.+.+.. ..+++-++|||+++... ..+.|...+..-..
T Consensus 92 ~eidaas~~~Vd~i----------------------R~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~ 149 (824)
T PRK07764 92 TEIDAASHGGVDDA----------------------RELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPE 149 (824)
T ss_pred EEecccccCCHHHH----------------------HHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCC
Confidence 22221111111111 1121111 13456688999997632 22333322222233
Q ss_pred CcEEEEEe-CcccccccCC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHH
Q 042574 271 GCKLVITT-RSLGVSRSMD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAI 339 (929)
Q Consensus 271 gs~ilvTt-R~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 339 (929)
.+.+|++| ....+...+. +..|++..++.++..+.+.+.+..... ....+....|++.++|.+..+
T Consensus 150 ~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv---~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 150 HLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV---PVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred CeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 55555444 4444443222 333899999999999888876644322 112455677899999988433
No 116
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.82 E-value=0.00014 Score=87.95 Aligned_cols=154 Identities=21% Similarity=0.245 Sum_probs=89.6
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcC--C-CcEEEEEEECCCCCHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETN--K-FNVVIWVTVSQPLDLIKLQTEIA 215 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--~-f~~~~wv~~s~~~~~~~~~~~i~ 215 (929)
.+++|| +.+++++++.|......-+.++|++|+|||++|+.+++......- . .+..+|. + +...+.
T Consensus 182 ~~~igr--~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~---- 250 (731)
T TIGR02639 182 DPLIGR--EDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLL---- 250 (731)
T ss_pred CcccCc--HHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHh----
Confidence 578999 788889999888776667889999999999999999998732110 1 1223332 1 111111
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC----------CccccccCCCCCCCCcEEE-EEeCc----
Q 042574 216 TALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF----------PLEEVGIPEPSEENGCKLV-ITTRS---- 280 (929)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~----------~~~~l~~~~~~~~~gs~il-vTtR~---- 280 (929)
.. .. ...+...+...+...+...++.+|++|++..-. +...+..|....+ .-++| .||+.
T Consensus 251 a~--~~--~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g-~i~~IgaTt~~e~~~ 325 (731)
T TIGR02639 251 AG--TK--YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG-KLRCIGSTTYEEYKN 325 (731)
T ss_pred hh--cc--ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-CeEEEEecCHHHHHH
Confidence 00 00 112333445555555544568999999986321 1122222222122 22344 44441
Q ss_pred -----ccccccCCcceEecccCCHHHHHHHHHhhh
Q 042574 281 -----LGVSRSMDCKEIGVELLSQEEALNLFLDKV 310 (929)
Q Consensus 281 -----~~v~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 310 (929)
..+.+.+ ..+.++.++.++..++++...
T Consensus 326 ~~~~d~al~rRf--~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 326 HFEKDRALSRRF--QKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HhhhhHHHHHhC--ceEEeCCCCHHHHHHHHHHHH
Confidence 1222222 238999999999999998654
No 117
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.82 E-value=0.00027 Score=79.75 Aligned_cols=180 Identities=18% Similarity=0.218 Sum_probs=102.8
Q ss_pred cccccchHHHHHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHh
Q 042574 140 TLAGKKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATAL 218 (929)
Q Consensus 140 ~~vGr~~~~~~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 218 (929)
.++|..-........+...+++ ..-+.|+|++|+|||+||+.+++.... ...-..++|++. .++..++...+
T Consensus 107 Fv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~-~~~~~~v~yi~~------~~f~~~~~~~~ 179 (440)
T PRK14088 107 FVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITS------EKFLNDLVDSM 179 (440)
T ss_pred cccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEH------HHHHHHHHHHH
Confidence 3457533333444444444332 345999999999999999999998732 222234677754 34555555554
Q ss_pred cCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC---Cc-cccccCCCC-CCCCcEEEEEeCcc---------ccc
Q 042574 219 KQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF---PL-EEVGIPEPS-EENGCKLVITTRSL---------GVS 284 (929)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---~~-~~l~~~~~~-~~~gs~ilvTtR~~---------~v~ 284 (929)
... . ...+.+.+. .+.-+|++||+.... .. +.+...+.. ...|..||+||... .+.
T Consensus 180 ~~~-----~----~~~f~~~~~-~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~ 249 (440)
T PRK14088 180 KEG-----K----LNEFREKYR-KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLV 249 (440)
T ss_pred hcc-----c----HHHHHHHHH-hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHh
Confidence 321 1 112223332 235589999997431 11 122211110 12345788888531 122
Q ss_pred ccCCcce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHH
Q 042574 285 RSMDCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAI 339 (929)
Q Consensus 285 ~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 339 (929)
.++.... +.+++.+.+.-..++++.+..... .-.++++..|++.+.|.--.+
T Consensus 250 SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~---~l~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 250 SRFQMGLVAKLEPPDEETRKKIARKMLEIEHG---ELPEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred hHHhcCceEeeCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHhccccCHHHH
Confidence 3334334 789999999999999888754322 123567888888888764433
No 118
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00029 Score=82.34 Aligned_cols=177 Identities=11% Similarity=0.169 Sum_probs=103.2
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhh--------------------hcCCCcEEE
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQK--------------------ETNKFNVVI 197 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~--------------------~~~~f~~~~ 197 (929)
.+++|. +..++.+..++..+.+ +.+.++|+.|+||||+|+.++....- ...+|+. .
T Consensus 17 ~~viGq--~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~-~ 93 (614)
T PRK14971 17 ESVVGQ--EALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI-H 93 (614)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-E
Confidence 678997 6778888888887765 56899999999999999998887621 0112332 2
Q ss_pred EEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEE
Q 042574 198 WVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLV 275 (929)
Q Consensus 198 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~il 275 (929)
.+..+...++.++. +++.++.... ..+++-++|+|++.... ..+.+...+..-..++.+|
T Consensus 94 ~ld~~~~~~vd~Ir-~li~~~~~~P-----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifI 155 (614)
T PRK14971 94 ELDAASNNSVDDIR-NLIEQVRIPP-----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFI 155 (614)
T ss_pred EecccccCCHHHHH-HHHHHHhhCc-----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEE
Confidence 22222222222222 1112111100 02345688999987532 2333332222223355555
Q ss_pred E-EeCcccccccCC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHH
Q 042574 276 I-TTRSLGVSRSMD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAI 339 (929)
Q Consensus 276 v-TtR~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 339 (929)
+ ||+...+..... +..+++.+++.++....+.+.+..... ....+.+..|++.++|..--+
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi---~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI---TAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 4 545444443222 223899999999999988876654322 122456788999999876433
No 119
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.0002 Score=82.31 Aligned_cols=195 Identities=14% Similarity=0.173 Sum_probs=104.9
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
.+++|. +..++.|...+.++. ...+.++|+.|+||||+|+.+++.+... ...+. ...+.-...+.|...
T Consensus 16 ~dIiGQ--e~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~-~~~~~-------~pCg~C~sC~~i~~g 85 (624)
T PRK14959 16 AEVAGQ--ETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCE-TAPTG-------EPCNTCEQCRKVTQG 85 (624)
T ss_pred HHhcCC--HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcccc-CCCCC-------CCCcccHHHHHHhcC
Confidence 678997 566777777777766 5788899999999999999999876321 00000 000000111111110
Q ss_pred hcCCC---CC-CccHHHHHHHHHHHH----HhcCcEEEEEecCCCc--CCccccccCCCCCCCCcEEEEEeCc-cccccc
Q 042574 218 LKQSL---PE-NEDKVRRAGRLSEML----KAKAKFVLILDDMWEA--FPLEEVGIPEPSEENGCKLVITTRS-LGVSRS 286 (929)
Q Consensus 218 l~~~~---~~-~~~~~~~~~~l~~~l----~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~-~~v~~~ 286 (929)
-.... .. .......+..+.+.+ ..+++-++|+|++... .....+...+........+|++|.. ..+...
T Consensus 86 ~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~T 165 (624)
T PRK14959 86 MHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVT 165 (624)
T ss_pred CCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHH
Confidence 00000 00 000011111122111 1346678999999753 2233333322211234455554443 444322
Q ss_pred CC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCcc-HHHHHHHhhh
Q 042574 287 MD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLP-LAIVTVASCM 346 (929)
Q Consensus 287 ~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~~~~L 346 (929)
+. +..+++.+++.++....+.+.+..... .-..+.+..|++.++|.+ .|+..+..++
T Consensus 166 I~SRcq~i~F~pLs~~eL~~~L~~il~~egi---~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 166 IVSRCQHFTFTRLSEAGLEAHLTKVLGREGV---DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHhhhhccccCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 21 223899999999999988876644321 123567788999999865 6776665544
No 120
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00037 Score=79.12 Aligned_cols=181 Identities=12% Similarity=0.151 Sum_probs=103.0
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhhhcC-C----------------Cc-EEEEE
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETN-K----------------FN-VVIWV 199 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-~----------------f~-~~~wv 199 (929)
.+++|. +..++.+..++..+++ ++..++|+.|+||||+|+.+++....... . +. -++.+
T Consensus 14 deiiGq--e~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~el 91 (535)
T PRK08451 14 DELIGQ--ESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEM 91 (535)
T ss_pred HHccCc--HHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEe
Confidence 678997 6677888888877775 46799999999999999999887621110 0 00 11222
Q ss_pred EECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEEE
Q 042574 200 TVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVIT 277 (929)
Q Consensus 200 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvT 277 (929)
..+....+..+.. ++..... .-..+++-++|+|++.... ..+.+...+......+++|++
T Consensus 92 daas~~gId~IRe-lie~~~~-----------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ 153 (535)
T PRK08451 92 DAASNRGIDDIRE-LIEQTKY-----------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILA 153 (535)
T ss_pred ccccccCHHHHHH-HHHHHhh-----------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEE
Confidence 2111112222211 1111100 0001456688999996532 222332222222345666666
Q ss_pred eCc-ccccccC--CcceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHH
Q 042574 278 TRS-LGVSRSM--DCKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTV 342 (929)
Q Consensus 278 tR~-~~v~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 342 (929)
|.+ ..+.... .+..+++.+++.++....+.+.+...+. ...++.+..|++.++|.+--+..+
T Consensus 154 ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi---~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 154 TTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV---SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred ECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 654 2222211 2233899999999999988876654332 123567788999999988544433
No 121
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00026 Score=82.53 Aligned_cols=185 Identities=15% Similarity=0.152 Sum_probs=100.9
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
.+++|. +..++.+..++..++ .+.+.++|+.|+||||+|+.++........... +-.+ ......
T Consensus 18 ~dIiGQ--e~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~---~~pC-------~~C~~~--- 82 (725)
T PRK07133 18 DDIVGQ--DHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDL---LEPC-------QECIEN--- 82 (725)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCC---CCch-------hHHHHh---
Confidence 678997 677788888888776 457789999999999999999887621110000 0000 000000
Q ss_pred hcCCC-----CC-CccHHHHHHHHHHHHH----hcCcEEEEEecCCCc--CCccccccCCCCCCCCcE-EEEEeCccccc
Q 042574 218 LKQSL-----PE-NEDKVRRAGRLSEMLK----AKAKFVLILDDMWEA--FPLEEVGIPEPSEENGCK-LVITTRSLGVS 284 (929)
Q Consensus 218 l~~~~-----~~-~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~-ilvTtR~~~v~ 284 (929)
.+... .. .......++.+..... .+++-++|+|++... ..+..+...+........ |++|++...+.
T Consensus 83 ~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 83 VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 00000 00 0001111222333222 256678999998653 223333222221122334 44555555554
Q ss_pred ccC--CcceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccH-HHHH
Q 042574 285 RSM--DCKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPL-AIVT 341 (929)
Q Consensus 285 ~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~ 341 (929)
... .+..+++.+++.++....+...+...+. ....+.+..|++.++|.+- |+..
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI---~id~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENI---SYEKNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 222 2334999999999999888876543321 1124567789999998764 4443
No 122
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.78 E-value=7.7e-05 Score=80.75 Aligned_cols=61 Identities=26% Similarity=0.442 Sum_probs=40.8
Q ss_pred ccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCC-CCcccCcc
Q 042574 497 ENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHT-NIEVLPSS 564 (929)
Q Consensus 497 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~i~~lp~~ 564 (929)
.++++|++++|.+..+|. + -++|++|.+.+|..+..+|..+ .++|++|++++| .+..+|.+
T Consensus 52 ~~l~~L~Is~c~L~sLP~-L---P~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV-L---PNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred cCCCEEEeCCCCCcccCC-C---CCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc
Confidence 456778888777777762 1 2357888887776666666543 356788888877 56666654
No 123
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.77 E-value=0.00015 Score=76.30 Aligned_cols=132 Identities=15% Similarity=0.164 Sum_probs=68.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKA 241 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (929)
..-+.++|++|+||||+|+.+++..... +.-....++.++.. ++. ... . . +.......+.+.
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~-~~~~~~~~v~~~~~----~l~----~~~---~-g--~~~~~~~~~~~~--- 103 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEM-NVLSKGHLIEVERA----DLV----GEY---I-G--HTAQKTREVIKK--- 103 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhc-CcccCCceEEecHH----Hhh----hhh---c-c--chHHHHHHHHHh---
Confidence 4568899999999999999999876221 11111123333221 111 110 0 0 111122222222
Q ss_pred cCcEEEEEecCCCcC----------CccccccCCCCCCCCcEEEEEeCcccc----------cccCCcceEecccCCHHH
Q 042574 242 KAKFVLILDDMWEAF----------PLEEVGIPEPSEENGCKLVITTRSLGV----------SRSMDCKEIGVELLSQEE 301 (929)
Q Consensus 242 ~~~~LlvlDdv~~~~----------~~~~l~~~~~~~~~gs~ilvTtR~~~v----------~~~~~~~~~~l~~L~~~~ 301 (929)
...-+|++|++..-. ..+.+............+|+++...+. ...+ ...+.+++++.++
T Consensus 104 a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf-~~~i~f~~~~~~e 182 (261)
T TIGR02881 104 ALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRF-PISIDFPDYTVEE 182 (261)
T ss_pred ccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhcc-ceEEEECCCCHHH
Confidence 123588999997421 122333333322333455566544322 2222 1127889999999
Q ss_pred HHHHHHhhhcc
Q 042574 302 ALNLFLDKVRI 312 (929)
Q Consensus 302 ~~~Lf~~~~~~ 312 (929)
-.+++.+.+..
T Consensus 183 l~~Il~~~~~~ 193 (261)
T TIGR02881 183 LMEIAERMVKE 193 (261)
T ss_pred HHHHHHHHHHH
Confidence 99999877654
No 124
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00033 Score=79.12 Aligned_cols=180 Identities=12% Similarity=0.167 Sum_probs=101.3
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhhhc--------------------CCCcEEE
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKET--------------------NKFNVVI 197 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~~f~~~~ 197 (929)
.+++|. +..++.+..++..+.+ ..+.++|+.|+||||+|+.+++...... .+++ .+
T Consensus 17 ~diiGq--~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~~ 93 (451)
T PRK06305 17 SEILGQ--DAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-VL 93 (451)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-eE
Confidence 678997 6777888888877764 6788999999999999999988763210 0111 11
Q ss_pred EEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEE
Q 042574 198 WVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLV 275 (929)
Q Consensus 198 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~il 275 (929)
++.......+.++. ++.+. +...-..+++-++|+|++.... ..+.+...+.....+..+|
T Consensus 94 ~i~g~~~~gid~ir-~i~~~-----------------l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~I 155 (451)
T PRK06305 94 EIDGASHRGIEDIR-QINET-----------------VLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFF 155 (451)
T ss_pred EeeccccCCHHHHH-HHHHH-----------------HHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEE
Confidence 11111111111111 11111 1100012467788999986432 2222322222222355566
Q ss_pred EEe-CcccccccCC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccH-HHHHH
Q 042574 276 ITT-RSLGVSRSMD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPL-AIVTV 342 (929)
Q Consensus 276 vTt-R~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~ 342 (929)
++| +...+..... +..+++.++++++....+.+.+..... ...++.+..|++.++|.+- |+..+
T Consensus 156 l~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~---~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 156 LATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI---ETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 555 3333332222 223899999999999888776544321 1235677889999999764 44433
No 125
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00048 Score=79.50 Aligned_cols=179 Identities=14% Similarity=0.120 Sum_probs=102.3
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhhhcCC--------------------CcEEE
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNK--------------------FNVVI 197 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~--------------------f~~~~ 197 (929)
.+++|. +..++.|..++.++++ +.+.++|+.|+||||+|+.++..+.-.... ..-++
T Consensus 13 ~eivGq--~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvi 90 (584)
T PRK14952 13 AEVVGQ--EHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVV 90 (584)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEE
Confidence 678997 6777888888888774 467999999999999999999876311100 00011
Q ss_pred EEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH----HhcCcEEEEEecCCCc--CCccccccCCCCCCCC
Q 042574 198 WVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEML----KAKAKFVLILDDMWEA--FPLEEVGIPEPSEENG 271 (929)
Q Consensus 198 wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~g 271 (929)
.+..+...++. .+..+.... ..+++-++|+|++... ...+.+...+..-...
T Consensus 91 eidaas~~gvd----------------------~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~ 148 (584)
T PRK14952 91 ELDAASHGGVD----------------------DTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEH 148 (584)
T ss_pred EeccccccCHH----------------------HHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCC
Confidence 12111111111 111222111 1245668899998753 2223332222222234
Q ss_pred cEEE-EEeCcccccccCC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccH-HHHHHHh
Q 042574 272 CKLV-ITTRSLGVSRSMD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPL-AIVTVAS 344 (929)
Q Consensus 272 s~il-vTtR~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~~~ 344 (929)
..+| +||....+..... +..+++.+++.++..+.+.+.+..... ....+.+..|++.++|.+- |+..+-.
T Consensus 149 ~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi---~i~~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 149 LIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV---VVDDAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred eEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4555 4555444432222 333899999999999888876654322 1124566778999999774 4444433
No 126
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.73 E-value=0.00044 Score=78.87 Aligned_cols=179 Identities=18% Similarity=0.239 Sum_probs=103.4
Q ss_pred cccccchHHHHHHHHHHhcCC--CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 140 TLAGKKTKKVVERIWEDLMGD--KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 140 ~~vGr~~~~~~~~l~~~l~~~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
.++|.........+..+.... ...-+.|+|++|+|||+||+.+++..... ..-..+++++.. ++...+...
T Consensus 124 fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~-~~~~~v~yi~~~------~~~~~~~~~ 196 (450)
T PRK00149 124 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEK-NPNAKVVYVTSE------KFTNDFVNA 196 (450)
T ss_pred cccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEEEHH------HHHHHHHHH
Confidence 345653333444444444432 23568999999999999999999987422 222345666543 333444444
Q ss_pred hcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC----ccccccCCCC-CCCCcEEEEEeCccc---------c
Q 042574 218 LKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP----LEEVGIPEPS-EENGCKLVITTRSLG---------V 283 (929)
Q Consensus 218 l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----~~~l~~~~~~-~~~gs~ilvTtR~~~---------v 283 (929)
+... . ...+.+.+. +.-+|||||+..... .+.+...+.. ...|..||+||.... +
T Consensus 197 ~~~~-----~----~~~~~~~~~--~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l 265 (450)
T PRK00149 197 LRNN-----T----MEEFKEKYR--SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERL 265 (450)
T ss_pred HHcC-----c----HHHHHHHHh--cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHH
Confidence 4211 1 122333332 355899999964211 1222211110 123456888886531 2
Q ss_pred cccCCcce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHH
Q 042574 284 SRSMDCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAI 339 (929)
Q Consensus 284 ~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 339 (929)
..++.... +.+++.+.++-..++++.+..... .-.++++..|++.+.|..-.+
T Consensus 266 ~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~---~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 266 RSRFEWGLTVDIEPPDLETRIAILKKKAEEEGI---DLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHcCcCCCHHHH
Confidence 33444444 899999999999999988764321 223567888999988876544
No 127
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.73 E-value=0.00018 Score=78.79 Aligned_cols=69 Identities=20% Similarity=0.180 Sum_probs=53.6
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQT 212 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 212 (929)
..+++. +...+.+...+... +.|.++|++|+|||++|+++++... ....++.+.||++++.++..++..
T Consensus 175 ~d~~i~--e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~-~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 175 NDLFIP--ETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLT-GEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hcccCC--HHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhc-CCcccceeeEEeecccccHHHHhc
Confidence 345554 66777888877643 4688899999999999999999873 335678899999999888776653
No 128
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.72 E-value=0.00017 Score=73.15 Aligned_cols=184 Identities=16% Similarity=0.207 Sum_probs=108.6
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEE-EEECCCCCHHHHHHHH--H
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIW-VTVSQPLDLIKLQTEI--A 215 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w-v~~s~~~~~~~~~~~i--~ 215 (929)
.+++|. +..+..+.+.+.....+...++|++|.|||+-|..++..+- -.+.|.+++- .++|....+.-+-..+ .
T Consensus 36 de~~gQ--e~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~-~~~~~~~rvl~lnaSderGisvvr~Kik~f 112 (346)
T KOG0989|consen 36 DELAGQ--EHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALN-CEQLFPCRVLELNASDERGISVVREKIKNF 112 (346)
T ss_pred Hhhcch--HHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhc-CccccccchhhhcccccccccchhhhhcCH
Confidence 667887 66777788888887789999999999999999999988873 2355655432 3444433322111111 0
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHH-HhcCc-EEEEEecCCCc--CCccccccCCCCCCCCcEEEEEeCc-ccccccC--C
Q 042574 216 TALKQSLPENEDKVRRAGRLSEML-KAKAK-FVLILDDMWEA--FPLEEVGIPEPSEENGCKLVITTRS-LGVSRSM--D 288 (929)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~l~~~l-~~~~~-~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~-~~v~~~~--~ 288 (929)
.++..... +.. ..-++ -++|||+++.. +.|..+..-.......++.++.+.. ..+-.-. .
T Consensus 113 akl~~~~~-------------~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SR 179 (346)
T KOG0989|consen 113 AKLTVLLK-------------RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSR 179 (346)
T ss_pred HHHhhccc-------------cccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhh
Confidence 00000000 000 01123 57789999863 4566665444443455565544433 2222211 2
Q ss_pred cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCcc-HHHHH
Q 042574 289 CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLP-LAIVT 341 (929)
Q Consensus 289 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~ 341 (929)
+..++-++|..++...-++..+..++. +-..+..+.|++.++|.- -|+.+
T Consensus 180 C~KfrFk~L~d~~iv~rL~~Ia~~E~v---~~d~~al~~I~~~S~GdLR~Ait~ 230 (346)
T KOG0989|consen 180 CQKFRFKKLKDEDIVDRLEKIASKEGV---DIDDDALKLIAKISDGDLRRAITT 230 (346)
T ss_pred HHHhcCCCcchHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 233889999999999888887755533 223556778999998863 34433
No 129
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.72 E-value=0.00042 Score=84.38 Aligned_cols=178 Identities=13% Similarity=0.187 Sum_probs=98.9
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhc---CCCcEEEE-EEECCCCCHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIW-VTVSQPLDLIKLQTEI 214 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~w-v~~s~~~~~~~~~~~i 214 (929)
.+++|| +.++.++++.|......-+.++|++|+||||+|+.++.+..... .-....+| +..+.-
T Consensus 187 d~~iGr--~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l---------- 254 (852)
T TIGR03345 187 DPVLGR--DDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL---------- 254 (852)
T ss_pred CcccCC--HHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh----------
Confidence 678999 67899999998887777788999999999999999999873210 01112222 222210
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHHH-hcCcEEEEEecCCCcC-------Ccc--ccccCCCCCCCCcEEEEEeCccc--
Q 042574 215 ATALKQSLPENEDKVRRAGRLSEMLK-AKAKFVLILDDMWEAF-------PLE--EVGIPEPSEENGCKLVITTRSLG-- 282 (929)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~-------~~~--~l~~~~~~~~~gs~ilvTtR~~~-- 282 (929)
........+...+...+..... .+++.+|++|++..-. ..+ .+..|....+ .-++|-||...+
T Consensus 255 ----~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G-~l~~IgaTT~~e~~ 329 (852)
T TIGR03345 255 ----QAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG-ELRTIAATTWAEYK 329 (852)
T ss_pred ----hcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC-CeEEEEecCHHHHh
Confidence 0000011122334444444443 2468999999986421 111 1333333222 234555554322
Q ss_pred --------ccccCCcceEecccCCHHHHHHHHHhhhcccCC-CCCcchHHHHHHHHHhcCCc
Q 042574 283 --------VSRSMDCKEIGVELLSQEEALNLFLDKVRISTS-QIPNLDKEIINSVVEECDGL 335 (929)
Q Consensus 283 --------v~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~-~~~~~~~~~~~~i~~~c~g~ 335 (929)
+.+++ ..+.+++++.+++.+++......-.. ....-..+....+++.+.+.
T Consensus 330 ~~~~~d~AL~rRf--~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 330 KYFEKDPALTRRF--QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hhhhccHHHHHhC--eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 22222 23999999999999997544322110 01112245556666666543
No 130
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.00054 Score=79.63 Aligned_cols=193 Identities=13% Similarity=0.209 Sum_probs=100.6
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEE-ECCCCCHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT-VSQPLDLIKLQTEIAT 216 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~~i~~ 216 (929)
.+++|. +..++.+..++.++.+ ..+.++|+.|+||||+|+.+++.+.-. ...+.-.|.. +....+.-...+.+..
T Consensus 16 ~eivGQ--e~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~-~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 16 ADITAQ--EHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ-RMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC-CcCCccccccccCCCCccCHHHHHHhc
Confidence 678997 6677778888877764 568999999999999999998887321 1110000110 0000000011111111
Q ss_pred HhcCC---CCC-CccHHHHHHHHHHHH----HhcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEE-EeCcccccc
Q 042574 217 ALKQS---LPE-NEDKVRRAGRLSEML----KAKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVI-TTRSLGVSR 285 (929)
Q Consensus 217 ~l~~~---~~~-~~~~~~~~~~l~~~l----~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilv-TtR~~~v~~ 285 (929)
.-..+ ... .......+..+.+.+ ..+++-++|+|+++... ..+.+...+..-...+.+|+ |++...+..
T Consensus 93 g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 93 GTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (620)
T ss_pred cCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 00000 000 001111222222222 12456688999986542 22333322222123455554 444444432
Q ss_pred cCC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccH
Q 042574 286 SMD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPL 337 (929)
Q Consensus 286 ~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 337 (929)
... +..+++.+++.++....+.+.+..... .-..+.+..+++.++|..-
T Consensus 173 TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi---~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 173 TIASRCQRFNFKRIPLDEIQSQLQMICRAEGI---QIDADALQLIARKAQGSMR 223 (620)
T ss_pred HHHhhceEEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCCHH
Confidence 222 223899999999988888776543321 1235677889999999654
No 131
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.00054 Score=77.87 Aligned_cols=177 Identities=13% Similarity=0.140 Sum_probs=99.7
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhhhcC------------------CCcEEEEE
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETN------------------KFNVVIWV 199 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------------------~f~~~~wv 199 (929)
.+++|. +..+..+..++..+.+ +.+.++|+.|+||||+|+.++........ .+.-++++
T Consensus 16 ~diiGq--~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 16 KEVIGQ--EIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred HHccCh--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 678897 6677888888877664 56788999999999999999887631100 01111122
Q ss_pred EECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHH----hcCcEEEEEecCCCcC--CccccccCCCCCCCCcE
Q 042574 200 TVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLK----AKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCK 273 (929)
Q Consensus 200 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ 273 (929)
..+....+ ..++.+..... .+++-++|+|+++... ..+.+...+........
T Consensus 94 daas~~gv----------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 94 DAASNRGI----------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred eCccCCCH----------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 11111111 11112222221 2456799999987532 22333222222223444
Q ss_pred EEE-EeCcccccccC--CcceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHH
Q 042574 274 LVI-TTRSLGVSRSM--DCKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTV 342 (929)
Q Consensus 274 ilv-TtR~~~v~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 342 (929)
+|+ ||+...+.... .+..+.+.+++.++....+.+.+..... ....+.+..|++.++|.+-.+...
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi---~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI---EYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 554 44443332211 1223889999999999888876654321 123456777888999877544433
No 132
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=2.1e-06 Score=85.74 Aligned_cols=62 Identities=19% Similarity=0.291 Sum_probs=31.6
Q ss_pred ccCCCCcEEEecCCCCc-ccCcccccccccceeecccccccccCc---cccccCCCCEEEccCCCC
Q 042574 543 MHMRGLKVLNLSHTNIE-VLPSSVSNLTNLRSLLLRWCRRLKRVP---SVAKLLALQYLDLERTWI 604 (929)
Q Consensus 543 ~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~~~---~~~~l~~L~~L~l~~~~i 604 (929)
..+.+|+.|.|.++.+. .+-..|.+-.+|+.|+++.|..++... -+.+++.|..|+++.|.+
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc
Confidence 44555555555555543 222334444555555655555554433 245555666666666533
No 133
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.00064 Score=78.92 Aligned_cols=194 Identities=12% Similarity=0.131 Sum_probs=105.1
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCc-EEEEEEECCCCCHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFN-VVIWVTVSQPLDLIKLQTEIAT 216 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~ 216 (929)
.+++|+ +..++.|.+++..+++ ..+.++|+.|+||||+|+.+++.+......-. ...+-.+ +.-.-.+.|..
T Consensus 24 ~dliGq--~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c----g~c~~C~~i~~ 97 (598)
T PRK09111 24 DDLIGQ--EAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC----GVGEHCQAIME 97 (598)
T ss_pred HHhcCc--HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC----cccHHHHHHhc
Confidence 678998 6778888888887774 47999999999999999999987632110000 0000000 00011111111
Q ss_pred HhcCCC---C-CCccHHHHHHHHHHHHH----hcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEEEe-Ccccccc
Q 042574 217 ALKQSL---P-ENEDKVRRAGRLSEMLK----AKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVITT-RSLGVSR 285 (929)
Q Consensus 217 ~l~~~~---~-~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTt-R~~~v~~ 285 (929)
.-..+. . ........++.+..... .+++-++|+|++.... ..+.+...+..-..++++|++| ....+..
T Consensus 98 g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 98 GRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhH
Confidence 111000 0 00001112222322221 2456678999996532 2333332222223455665544 4444332
Q ss_pred cCC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHH
Q 042574 286 SMD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVT 341 (929)
Q Consensus 286 ~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 341 (929)
... +..+.+..++.++....+.+.+..... ....+.+..|++.++|.+.-+..
T Consensus 178 tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi---~i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 178 TVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV---EVEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred HHHhheeEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 222 223899999999999999887654422 12246678899999998855543
No 134
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.71 E-value=3.1e-05 Score=55.59 Aligned_cols=40 Identities=33% Similarity=0.497 Sum_probs=30.6
Q ss_pred CCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCC
Q 042574 592 LALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFP 631 (929)
Q Consensus 592 ~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~ 631 (929)
++|++|++++|.|+.+|..+.+|++|+.|++++|+++.++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4678888888888888877888888888888888877654
No 135
>PRK06620 hypothetical protein; Validated
Probab=97.71 E-value=0.00017 Score=72.81 Aligned_cols=155 Identities=15% Similarity=0.077 Sum_probs=87.9
Q ss_pred ccccccchHHHHHHHHHHhcCC--Ce--eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGD--KV--TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEI 214 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~--~~--~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 214 (929)
..++|..-......+.++.... +. +.+.|+|++|+|||+|++.+++... . .++. ..+.
T Consensus 17 ~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~---~-----~~~~--~~~~-------- 78 (214)
T PRK06620 17 EFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSN---A-----YIIK--DIFF-------- 78 (214)
T ss_pred hhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccC---C-----EEcc--hhhh--------
Confidence 4567753344455555544321 12 6699999999999999998777541 1 1111 0000
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC--ccccccCCCCCCCCcEEEEEeCcccc-------cc
Q 042574 215 ATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP--LEEVGIPEPSEENGCKLVITTRSLGV-------SR 285 (929)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~ilvTtR~~~v-------~~ 285 (929)
.. ... +..-+|++||+....+ +-.+...+. ..|..||+|++...- .+
T Consensus 79 ------------~~--------~~~--~~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~S 134 (214)
T PRK06620 79 ------------NE--------EIL--EKYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSS 134 (214)
T ss_pred ------------ch--------hHH--hcCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHH
Confidence 00 011 1235788999974221 111111111 346689999985432 22
Q ss_pred cCCcce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHH
Q 042574 286 SMDCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLA 338 (929)
Q Consensus 286 ~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 338 (929)
++.... +++++++.++-..++++.+.... -.-.++++.-|++.+.|.--.
T Consensus 135 Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~---l~l~~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 135 RIKSVLSILLNSPDDELIKILIFKHFSISS---VTISRQIIDFLLVNLPREYSK 185 (214)
T ss_pred HHhCCceEeeCCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHccCCHHH
Confidence 334343 89999999998888887765321 112356777788777765433
No 136
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.0005 Score=80.65 Aligned_cols=192 Identities=15% Similarity=0.181 Sum_probs=104.3
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
.+++|. +..++.|..++..+.+ +.+.++|+.|+||||+|+.+++.+..... .. -....+.....+.|...
T Consensus 16 ~eiiGq--~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~-~~------~~~~c~~c~~c~~i~~~ 86 (585)
T PRK14950 16 AELVGQ--EHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTN-DP------KGRPCGTCEMCRAIAEG 86 (585)
T ss_pred HHhcCC--HHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCC-CC------CCCCCccCHHHHHHhcC
Confidence 688997 6677778888877664 56789999999999999999987621110 00 00001111222222221
Q ss_pred hcCCC---CC-CccHHHHHHHHHHHHH----hcCcEEEEEecCCCc--CCccccccCCCCCCCCcEEEEEeCc-cccccc
Q 042574 218 LKQSL---PE-NEDKVRRAGRLSEMLK----AKAKFVLILDDMWEA--FPLEEVGIPEPSEENGCKLVITTRS-LGVSRS 286 (929)
Q Consensus 218 l~~~~---~~-~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~-~~v~~~ 286 (929)
.+... .. .......+..+...+. .+++-++|+|++... ...+.+...+......+.+|++|.+ ..+...
T Consensus 87 ~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~t 166 (585)
T PRK14950 87 SAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPAT 166 (585)
T ss_pred CCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHH
Confidence 11100 00 0001111222222221 245678999999643 2233333222222335566655543 333221
Q ss_pred CC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHH
Q 042574 287 MD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTV 342 (929)
Q Consensus 287 ~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 342 (929)
.. +..+.+..++.++....+...+..... ....+.+..|++.++|.+..+...
T Consensus 167 I~SR~~~i~f~~l~~~el~~~L~~~a~~egl---~i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 167 ILSRCQRFDFHRHSVADMAAHLRKIAAAEGI---NLEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHhccceeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 11 222888999999998888877654332 123467788999999988655443
No 137
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.66 E-value=0.0033 Score=67.82 Aligned_cols=199 Identities=13% Similarity=0.202 Sum_probs=114.1
Q ss_pred ccccccccchHHHHHHHHHHh----cCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHH
Q 042574 137 TTATLAGKKTKKVVERIWEDL----MGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQT 212 (929)
Q Consensus 137 ~~~~~vGr~~~~~~~~l~~~l----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 212 (929)
++..++|| +.+...+-+++ .....+.+-|.|.+|.|||.+...++.+....... -.++++.+..-.....++.
T Consensus 148 ~p~~l~gR--e~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 148 PPGTLKGR--ELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCCccch--HHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHH
Confidence 34678998 55566565555 34557889999999999999999999987432222 2467777766556777777
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHHHhc-CcEEEEEecCCCc-----CCccccccCCCCCCCCcEEEEEeCcc--cc-
Q 042574 213 EIATALKQSLPENEDKVRRAGRLSEMLKAK-AKFVLILDDMWEA-----FPLEEVGIPEPSEENGCKLVITTRSL--GV- 283 (929)
Q Consensus 213 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-~~~LlvlDdv~~~-----~~~~~l~~~~~~~~~gs~ilvTtR~~--~v- 283 (929)
.|...+-..........+....+.+...+. ..+|+|+|..+.- ..+-.+ ..++ .-.++++|+.---. +.
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~l-Fewp-~lp~sr~iLiGiANslDlT 302 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTL-FEWP-KLPNSRIILIGIANSLDLT 302 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeee-hhcc-cCCcceeeeeeehhhhhHH
Confidence 777776222212222233334444444333 4799999998742 111111 1122 23455655432110 00
Q ss_pred -------cccCCcce--EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHH
Q 042574 284 -------SRSMDCKE--IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTV 342 (929)
Q Consensus 284 -------~~~~~~~~--~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 342 (929)
-....... +.-.|.+.++-.+++..+...... .......++.+++++.|.---+..+
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t--~~~~~~Aie~~ArKvaa~SGDlRka 368 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST--SIFLNAAIELCARKVAAPSGDLRKA 368 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc--cccchHHHHHHHHHhccCchhHHHH
Confidence 01112222 778999999999999988755432 2222334555555555444333333
No 138
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.65 E-value=0.0053 Score=61.99 Aligned_cols=171 Identities=19% Similarity=0.262 Sum_probs=96.9
Q ss_pred ccccccchHHHHHHHHHHhc-----CCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLM-----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTE 213 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~-----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 213 (929)
.+|+|+ ++.++.+--++. ++.+-=|.++|++|.||||||.-+++... + .+. +.+.+-+
T Consensus 26 ~efiGQ--~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emg-v--n~k------~tsGp~l------ 88 (332)
T COG2255 26 DEFIGQ--EKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELG-V--NLK------ITSGPAL------ 88 (332)
T ss_pred HHhcCh--HHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhc-C--CeE------ecccccc------
Confidence 789998 444444443332 33466799999999999999999999872 1 111 1111111
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC-C--------ccccccCC-CCCCCCcE----------
Q 042574 214 IATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF-P--------LEEVGIPE-PSEENGCK---------- 273 (929)
Q Consensus 214 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~-~--------~~~l~~~~-~~~~~gs~---------- 273 (929)
+...-...+...+ ...=+|++|.+.... . .+++..-. -..++++|
T Consensus 89 -------------eK~gDlaaiLt~L--e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 89 -------------EKPGDLAAILTNL--EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred -------------cChhhHHHHHhcC--CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 0111111222222 234456667765321 1 11111100 01223333
Q ss_pred -EEEEeCcccccccCCcce---EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHHh
Q 042574 274 -LVITTRSLGVSRSMDCKE---IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVAS 344 (929)
Q Consensus 274 -ilvTtR~~~v~~~~~~~~---~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 344 (929)
|=.|||.-.+..-+.... .+++..+.+|-.++..+.+..-.. .-.++-+.+|+++..|-|--...+-+
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i---~i~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI---EIDEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC---CCChHHHHHHHHhccCCcHHHHHHHH
Confidence 447999766654443333 688999999999999887754321 22356788999999999955544333
No 139
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.65 E-value=0.00025 Score=75.09 Aligned_cols=130 Identities=12% Similarity=0.105 Sum_probs=70.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcC
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKA 243 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 243 (929)
-|.++|++|+||||+|+.++..... .+.....-|+.++. .+ +...+.. ... .....+.+. -.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~-~g~~~~~~~v~v~~----~~----l~~~~~g----~~~--~~~~~~~~~---a~ 121 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHR-LGYVRKGHLVSVTR----DD----LVGQYIG----HTA--PKTKEILKR---AM 121 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH-cCCcccceEEEecH----HH----HhHhhcc----cch--HHHHHHHHH---cc
Confidence 4889999999999999988887632 22222223444442 12 2222111 111 112222222 23
Q ss_pred cEEEEEecCCCc------CC-----ccccccCCCCCCCCcEEEEEeCccccc----------ccCCcceEecccCCHHHH
Q 042574 244 KFVLILDDMWEA------FP-----LEEVGIPEPSEENGCKLVITTRSLGVS----------RSMDCKEIGVELLSQEEA 302 (929)
Q Consensus 244 ~~LlvlDdv~~~------~~-----~~~l~~~~~~~~~gs~ilvTtR~~~v~----------~~~~~~~~~l~~L~~~~~ 302 (929)
.-+|+||++... .. ++.+...+.....+.+||+++...... ..+ ...+.+++++.+|.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~-~~~i~fp~l~~edl 200 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRV-AHHVDFPDYSEAEL 200 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhC-CcEEEeCCcCHHHH
Confidence 468999999632 01 122333333333456677766532211 111 12288999999999
Q ss_pred HHHHHhhhcc
Q 042574 303 LNLFLDKVRI 312 (929)
Q Consensus 303 ~~Lf~~~~~~ 312 (929)
..++...+..
T Consensus 201 ~~I~~~~l~~ 210 (284)
T TIGR02880 201 LVIAGLMLKE 210 (284)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 140
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.65 E-value=0.00027 Score=86.44 Aligned_cols=155 Identities=15% Similarity=0.227 Sum_probs=90.8
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCC---CcEEEEEEECCCCCHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNK---FNVVIWVTVSQPLDLIKLQTEIA 215 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~s~~~~~~~~~~~i~ 215 (929)
..++|| +++++++++.|......-+.++|++|+|||++|..++.......-. -+..+|. + +...++.
T Consensus 179 ~~~igr--~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a--- 248 (821)
T CHL00095 179 DPVIGR--EKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA--- 248 (821)
T ss_pred CCCCCc--HHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc---
Confidence 468999 8899999999987666677899999999999999999987321100 1233442 1 1211110
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCc---------CCccccccCCCCCCCCcEEEEEeCcccccc-
Q 042574 216 TALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEA---------FPLEEVGIPEPSEENGCKLVITTRSLGVSR- 285 (929)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~---------~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~- 285 (929)
+..+ ..+.+.+...+...+...++.+|++|++..- .+...+..|....+ .-++|.+|...+...
T Consensus 249 ---g~~~--~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 249 ---GTKY--RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEYRKH 322 (821)
T ss_pred ---cCCC--ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHHHHH
Confidence 1111 2234445556666655567899999999531 11222322322222 234555554433211
Q ss_pred -----cCC--cceEecccCCHHHHHHHHHhh
Q 042574 286 -----SMD--CKEIGVELLSQEEALNLFLDK 309 (929)
Q Consensus 286 -----~~~--~~~~~l~~L~~~~~~~Lf~~~ 309 (929)
.+. ...+.+...+.++...++...
T Consensus 323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 323 IEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 111 112788889999988888653
No 141
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.00078 Score=77.89 Aligned_cols=190 Identities=15% Similarity=0.167 Sum_probs=101.9
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
.+++|. +..++.+..++.++.+ +.+.++|+.|+||||+|+.+++...... ... ...++...+- +.|...
T Consensus 16 ~diiGq--e~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~-~~~---~~pC~~C~~C----~~i~~~ 85 (563)
T PRK06647 16 NSLEGQ--DFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVN-GPT---PMPCGECSSC----KSIDND 85 (563)
T ss_pred HHccCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcccc-CCC---CCCCccchHH----HHHHcC
Confidence 678997 6777888888887764 5789999999999999999998863210 000 0000000000 011000
Q ss_pred hcCC---CCCC-ccHHHHHHHHHHHH----HhcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEEEe-Cccccccc
Q 042574 218 LKQS---LPEN-EDKVRRAGRLSEML----KAKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVITT-RSLGVSRS 286 (929)
Q Consensus 218 l~~~---~~~~-~~~~~~~~~l~~~l----~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTt-R~~~v~~~ 286 (929)
-..+ .... ......+..+...+ ..+++-++|+|++.... .++.+...+......+.+|++| ....+...
T Consensus 86 ~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~t 165 (563)
T PRK06647 86 NSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPAT 165 (563)
T ss_pred CCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHH
Confidence 0000 0000 00111111222111 12456689999986532 2333333333223455665555 33333221
Q ss_pred CC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHH
Q 042574 287 MD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVT 341 (929)
Q Consensus 287 ~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 341 (929)
.. +..++..+++.++..+.+.+.+..... .-.++.+..|++.++|.+-.+..
T Consensus 166 I~SRc~~~~f~~l~~~el~~~L~~i~~~egi---~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 166 IKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI---KYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHhceEEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 11 223888999999998888876644321 22356677799999998754433
No 142
>CHL00181 cbbX CbbX; Provisional
Probab=97.61 E-value=0.00056 Score=72.41 Aligned_cols=132 Identities=14% Similarity=0.112 Sum_probs=70.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhc
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAK 242 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 242 (929)
..|.++|++|+||||+|+.+++... ..+.-...-|+.++. .++ ...+.. ... .....+.+. .
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~-~~g~~~~~~~~~v~~----~~l----~~~~~g----~~~--~~~~~~l~~---a 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILY-KLGYIKKGHLLTVTR----DDL----VGQYIG----HTA--PKTKEVLKK---A 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH-HcCCCCCCceEEecH----HHH----HHHHhc----cch--HHHHHHHHH---c
Confidence 3588999999999999999988762 222211122444441 122 221111 111 111222222 2
Q ss_pred CcEEEEEecCCCc-----------CCccccccCCCCCCCCcEEEEEeCcccc----------cccCCcceEecccCCHHH
Q 042574 243 AKFVLILDDMWEA-----------FPLEEVGIPEPSEENGCKLVITTRSLGV----------SRSMDCKEIGVELLSQEE 301 (929)
Q Consensus 243 ~~~LlvlDdv~~~-----------~~~~~l~~~~~~~~~gs~ilvTtR~~~v----------~~~~~~~~~~l~~L~~~~ 301 (929)
..-+|++|++... +..+.+...+.....+.+||+++..... .+++. ..+..++++.++
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~-~~i~F~~~t~~e 200 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIA-NHVDFPDYTPEE 200 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCC-ceEEcCCcCHHH
Confidence 2359999999642 1112222333333345677777754332 22221 128899999999
Q ss_pred HHHHHHhhhccc
Q 042574 302 ALNLFLDKVRIS 313 (929)
Q Consensus 302 ~~~Lf~~~~~~~ 313 (929)
..+++...+...
T Consensus 201 l~~I~~~~l~~~ 212 (287)
T CHL00181 201 LLQIAKIMLEEQ 212 (287)
T ss_pred HHHHHHHHHHHh
Confidence 999988876543
No 143
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.60 E-value=0.0004 Score=75.55 Aligned_cols=144 Identities=16% Similarity=0.191 Sum_probs=79.5
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
.+++|. +...+.+..++..+. ..++.++|++|+||||+|+.+++... .. ...++.+. .....+...+ ..
T Consensus 21 ~~~~~~--~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~---~~---~~~i~~~~-~~~~~i~~~l-~~ 90 (316)
T PHA02544 21 DECILP--AADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG---AE---VLFVNGSD-CRIDFVRNRL-TR 90 (316)
T ss_pred HHhcCc--HHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC---cc---ceEeccCc-ccHHHHHHHH-HH
Confidence 678998 667778888887766 46777799999999999999988751 11 23444443 2221111111 11
Q ss_pred hcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC---ccccccCCCCCCCCcEEEEEeCccc-ccccC--Ccce
Q 042574 218 LKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP---LEEVGIPEPSEENGCKLVITTRSLG-VSRSM--DCKE 291 (929)
Q Consensus 218 l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~---~~~l~~~~~~~~~gs~ilvTtR~~~-v~~~~--~~~~ 291 (929)
+... ..+ .+.+-++|+||+..... .+.+...+.....++++|+||.... +.... .+..
T Consensus 91 ~~~~---------------~~~-~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~ 154 (316)
T PHA02544 91 FAST---------------VSL-TGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRV 154 (316)
T ss_pred HHHh---------------hcc-cCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceE
Confidence 1000 000 13456889999975411 1222211222245678888886532 11111 1112
Q ss_pred EecccCCHHHHHHHHHh
Q 042574 292 IGVELLSQEEALNLFLD 308 (929)
Q Consensus 292 ~~l~~L~~~~~~~Lf~~ 308 (929)
+.++..+.++..+++..
T Consensus 155 i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 155 IDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEeCCCCHHHHHHHHHH
Confidence 66667777777666543
No 144
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.59 E-value=0.00073 Score=75.15 Aligned_cols=169 Identities=16% Similarity=0.238 Sum_probs=90.2
Q ss_pred ccccccchHHHHHHHHHHhc----C---------CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCC
Q 042574 139 ATLAGKKTKKVVERIWEDLM----G---------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 205 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~----~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 205 (929)
..+.|+ +..++++.+.+. . ..++-|.++|++|+|||++|+.+++... .. |+.++.
T Consensus 131 ~di~Gl--~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~---~~-----~i~v~~-- 198 (389)
T PRK03992 131 EDIGGL--EEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN---AT-----FIRVVG-- 198 (389)
T ss_pred HHhCCc--HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC---CC-----EEEeeh--
Confidence 567787 455555555432 1 2356799999999999999999999762 22 222211
Q ss_pred CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC----------C------ccccccCCC--C
Q 042574 206 DLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF----------P------LEEVGIPEP--S 267 (929)
Q Consensus 206 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~----------~------~~~l~~~~~--~ 267 (929)
.++ ..... .........+........+.+|+|||++... . +..+...+. .
T Consensus 199 --~~l----~~~~~------g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~ 266 (389)
T PRK03992 199 --SEL----VQKFI------GEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD 266 (389)
T ss_pred --HHH----hHhhc------cchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC
Confidence 111 11110 0112222333333334567899999997421 0 001111111 1
Q ss_pred CCCCcEEEEEeCccccc-ccC----Ccce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCc
Q 042574 268 EENGCKLVITTRSLGVS-RSM----DCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGL 335 (929)
Q Consensus 268 ~~~gs~ilvTtR~~~v~-~~~----~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 335 (929)
...+..||.||...+.. ..+ .-.. +.++..+.++..++|+.++.......... ...+++.+.|.
T Consensus 267 ~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 267 PRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred CCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 12355677777653321 111 1122 88999999999999987764432111122 34466666665
No 145
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.58 E-value=0.004 Score=71.41 Aligned_cols=156 Identities=12% Similarity=0.175 Sum_probs=92.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhc
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAK 242 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 242 (929)
..+.|+|..|+|||.|++.+++..... .....++|++. .++..++...+... ....+.+.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~-~~g~~V~Yita------eef~~el~~al~~~---------~~~~f~~~y~-- 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRL-YPGTRVRYVSS------EEFTNEFINSIRDG---------KGDSFRRRYR-- 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEeeH------HHHHHHHHHHHHhc---------cHHHHHHHhh--
Confidence 458999999999999999999987322 12234566653 33444444433211 1112333332
Q ss_pred CcEEEEEecCCCcC---Ccc-ccccCCCC-CCCCcEEEEEeCcc---------cccccCCcce-EecccCCHHHHHHHHH
Q 042574 243 AKFVLILDDMWEAF---PLE-EVGIPEPS-EENGCKLVITTRSL---------GVSRSMDCKE-IGVELLSQEEALNLFL 307 (929)
Q Consensus 243 ~~~LlvlDdv~~~~---~~~-~l~~~~~~-~~~gs~ilvTtR~~---------~v~~~~~~~~-~~l~~L~~~~~~~Lf~ 307 (929)
+.=+|||||+.... .++ .++..+.. ...|..|||||+.. .+..++.... +.++..+.+.-..++.
T Consensus 377 ~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 377 EMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred cCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 24588999996431 121 22211111 13356788888862 2333444444 8999999999999999
Q ss_pred hhhcccCCCCCcchHHHHHHHHHhcCCccHHH
Q 042574 308 DKVRISTSQIPNLDKEIINSVVEECDGLPLAI 339 (929)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 339 (929)
+++....- .--++++.-|++.+.+..-.+
T Consensus 457 kka~~r~l---~l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 457 KKAVQEQL---NAPPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHhcCC---CCCHHHHHHHHHhccCCHHHH
Confidence 88755422 223567777888777654333
No 146
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.55 E-value=0.00048 Score=72.12 Aligned_cols=163 Identities=13% Similarity=0.171 Sum_probs=99.8
Q ss_pred ccccccchHHHHHHHHHHhcCCC---eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDK---VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIA 215 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~---~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 215 (929)
+.+.+| +..+..+...+.+.. +++|-|+|.+|.|||.+.+++.+... . ..+|+++-+.++..-++..|+
T Consensus 6 ~~v~~R--e~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n---~---~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 6 PNVPCR--ESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN---L---ENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred cCccch--HHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC---C---cceeeehHHhccHHHHHHHHH
Confidence 456788 667777877775543 56679999999999999999999762 1 258999999999999999999
Q ss_pred HHhcCCCCCCccH---HHHHHHHHHHHH-------hcCcEEEEEecCCCcCCccccccC----CC-CCCCCcEEEEEeCc
Q 042574 216 TALKQSLPENEDK---VRRAGRLSEMLK-------AKAKFVLILDDMWEAFPLEEVGIP----EP-SEENGCKLVITTRS 280 (929)
Q Consensus 216 ~~l~~~~~~~~~~---~~~~~~l~~~l~-------~~~~~LlvlDdv~~~~~~~~l~~~----~~-~~~~gs~ilvTtR~ 280 (929)
.+.+....+.... .+........+. .++.+.||||+++.-.+.+....+ +. -.....-+|+++-.
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~ 157 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAP 157 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEecc
Confidence 9986221111111 111222222111 246899999999865443332111 00 00112234444433
Q ss_pred cc--c-cccCCcce---EecccCCHHHHHHHHHhh
Q 042574 281 LG--V-SRSMDCKE---IGVELLSQEEALNLFLDK 309 (929)
Q Consensus 281 ~~--v-~~~~~~~~---~~l~~L~~~~~~~Lf~~~ 309 (929)
.- . ...++... +..+.-+.+|...++.+.
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 21 1 12234443 667888889998888554
No 147
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.55 E-value=7.8e-05 Score=53.54 Aligned_cols=33 Identities=42% Similarity=0.533 Sum_probs=18.5
Q ss_pred CCcEEEecCCCCcccCcccccccccceeecccc
Q 042574 547 GLKVLNLSHTNIEVLPSSVSNLTNLRSLLLRWC 579 (929)
Q Consensus 547 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~ 579 (929)
+|++|++++|.|+.+|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 456666666666666555556666655555555
No 148
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.55 E-value=1.8e-06 Score=96.03 Aligned_cols=126 Identities=25% Similarity=0.281 Sum_probs=92.8
Q ss_pred cccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcc-cccccccceeec
Q 042574 498 NLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSS-VSNLTNLRSLLL 576 (929)
Q Consensus 498 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l 576 (929)
.+...+++.|.+..+...+ .-++.|+.|+|++|. +.+.. .+..+++|++|||++|.+..+|.- ...+. |+.|++
T Consensus 165 ~L~~a~fsyN~L~~mD~SL-qll~ale~LnLshNk-~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESL-QLLPALESLNLSHNK-FTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHHhHHHHH-HHHHHhhhhccchhh-hhhhH--HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 5777788888766544332 346789999999997 44443 346889999999999998888752 23343 899999
Q ss_pred ccccccccCccccccCCCCEEEccCCCCccccc--cccCCCCCCEEEccCCCCcc
Q 042574 577 RWCRRLKRVPSVAKLLALQYLDLERTWIEEVPE--GMEMLENLSHLYLSSPPLKK 629 (929)
Q Consensus 577 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~ 629 (929)
++| -++.+-.+.+|.+|+.||+++|-|..... -++.|..|+.|+|.||++--
T Consensus 240 rnN-~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 240 RNN-ALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred ccc-HHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 876 56777788899999999999986653322 26778889999999987643
No 149
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.53 E-value=0.0012 Score=70.84 Aligned_cols=196 Identities=13% Similarity=0.124 Sum_probs=104.6
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHHhhhcC------------CCcEEEEEEECCCC
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETN------------KFNVVIWVTVSQPL 205 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~------------~f~~~~wv~~s~~~ 205 (929)
.+++|. +..++.+...+.+++ .+...++|+.|+||+++|..++...-.... ...-..|+.-....
T Consensus 4 ~~iiGq--~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 4 ANLIGQ--PLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred HHhCCH--HHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 467887 677888888888877 489999999999999999999887632211 11112333211000
Q ss_pred CHHHHHHHHHHHhcCCC-CCCccHHHHHHHHHHHHH----hcCcEEEEEecCCCcCC--ccccccCCCCCCCCcEEEEEe
Q 042574 206 DLIKLQTEIATALKQSL-PENEDKVRRAGRLSEMLK----AKAKFVLILDDMWEAFP--LEEVGIPEPSEENGCKLVITT 278 (929)
Q Consensus 206 ~~~~~~~~i~~~l~~~~-~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~ilvTt 278 (929)
+-..+-...+...+... ....-..+.++.+.+.+. .+++-++|+|++..... ...+...+..-.+..-|++|+
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~ 161 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAP 161 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEEC
Confidence 00000001111111000 000111223344444442 25677899999875422 222221111112233444554
Q ss_pred CcccccccCC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHH
Q 042574 279 RSLGVSRSMD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTV 342 (929)
Q Consensus 279 R~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 342 (929)
....+..... +..+++.++++++..+.+.+...... .......++..++|.|..+...
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHH
Confidence 4444433222 23399999999999999987643221 1111357889999999766543
No 150
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=4e-05 Score=76.88 Aligned_cols=84 Identities=21% Similarity=0.256 Sum_probs=42.0
Q ss_pred cCCCCcEEEecCCCCc---ccCcccccccccceeecccccccccCccc-cccCCCCEEEccCCCCc--cccccccCCCCC
Q 042574 544 HMRGLKVLNLSHTNIE---VLPSSVSNLTNLRSLLLRWCRRLKRVPSV-AKLLALQYLDLERTWIE--EVPEGMEMLENL 617 (929)
Q Consensus 544 ~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L 617 (929)
...+++.|||.+|.|+ .+-.-+.++++|++|+++.|..-..+.++ -.+.+|++|-|.++.+. .....+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 4455666666666554 22222345666666666655332222222 23445666666665433 333335556666
Q ss_pred CEEEccCCCC
Q 042574 618 SHLYLSSPPL 627 (929)
Q Consensus 618 ~~L~l~~~~~ 627 (929)
+.|.++.|++
T Consensus 149 telHmS~N~~ 158 (418)
T KOG2982|consen 149 TELHMSDNSL 158 (418)
T ss_pred hhhhhccchh
Confidence 6666666543
No 151
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.50 E-value=0.00033 Score=65.86 Aligned_cols=90 Identities=20% Similarity=0.146 Sum_probs=49.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhc
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAK 242 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 242 (929)
..+.|+|++|+||||+|+.++..... ....++++..+........... ....... ............+.......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP---PGGGVIYIDGEDILEEVLDQLL-LIIVGGK-KASGSGELRLRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC---CCCCEEEECCEEccccCHHHHH-hhhhhcc-CCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999998732 1123556654443322211111 1111111 11222333333444444333
Q ss_pred CcEEEEEecCCCcCC
Q 042574 243 AKFVLILDDMWEAFP 257 (929)
Q Consensus 243 ~~~LlvlDdv~~~~~ 257 (929)
+..++++|++.....
T Consensus 78 ~~~viiiDei~~~~~ 92 (148)
T smart00382 78 KPDVLILDEITSLLD 92 (148)
T ss_pred CCCEEEEECCcccCC
Confidence 359999999987543
No 152
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.48 E-value=0.0028 Score=73.67 Aligned_cols=188 Identities=12% Similarity=0.150 Sum_probs=99.2
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
.+++|+ +..++.+.+++..+. .+.+.++|+.|+||||+|+.++........ -+ ....+.-.....|...
T Consensus 16 ~~viGq--~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~-~~-------~~pC~~C~~C~~i~~g 85 (559)
T PRK05563 16 EDVVGQ--EHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNP-PD-------GEPCNECEICKAITNG 85 (559)
T ss_pred HhccCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCC-CC-------CCCCCccHHHHHHhcC
Confidence 678998 667778888887765 567788999999999999999887631110 00 0000000111111110
Q ss_pred hcCCC---CC-CccHHHHHHHHHHHHH----hcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEE-EEeCccccccc
Q 042574 218 LKQSL---PE-NEDKVRRAGRLSEMLK----AKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLV-ITTRSLGVSRS 286 (929)
Q Consensus 218 l~~~~---~~-~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~il-vTtR~~~v~~~ 286 (929)
...+. .. .......+..+..... .+++-++|+|++.... .+..+...+........+| .||....+...
T Consensus 86 ~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~t 165 (559)
T PRK05563 86 SLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPAT 165 (559)
T ss_pred CCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHH
Confidence 00000 00 0011111222222211 3456788999997532 2333322222112234444 45554444322
Q ss_pred CC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHH
Q 042574 287 MD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAI 339 (929)
Q Consensus 287 ~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 339 (929)
.. +..+...+++.++....+...+...+. .-..+.+..|++.++|.+..+
T Consensus 166 I~SRc~~~~f~~~~~~ei~~~L~~i~~~egi---~i~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 166 ILSRCQRFDFKRISVEDIVERLKYILDKEGI---EYEDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHhHheEEecCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHH
Confidence 22 223888999999998888876644321 112456778888888877543
No 153
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.48 E-value=2.4e-05 Score=88.43 Aligned_cols=107 Identities=26% Similarity=0.388 Sum_probs=67.0
Q ss_pred ccCCCCcEEEecCCCCcccCcccccccccceeecccccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEc
Q 042574 543 MHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYL 622 (929)
Q Consensus 543 ~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l 622 (929)
..+++|.+|++.+|.|..+...+..+.+|++|++++| .++.+..+..++.|+.|++.+|.|..++ ++..+++|+.+++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDL 169 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheecccc-ccccccchhhccchhhheeccCcchhcc-CCccchhhhcccC
Confidence 4566666677777766666544666667777777665 4555555666666777777777666653 3445667777777
Q ss_pred cCCCCccCCC-CccCCCCCccEEEeecCCch
Q 042574 623 SSPPLKKFPT-GILPRLRNLYKLKLSFGNEA 652 (929)
Q Consensus 623 ~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~ 652 (929)
++|.+..+.. . +..+.+|+.+++..|...
T Consensus 170 ~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 170 SYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred Ccchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 7776666554 2 355666666666655433
No 154
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.47 E-value=0.0049 Score=61.51 Aligned_cols=191 Identities=18% Similarity=0.210 Sum_probs=107.8
Q ss_pred HHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECC-CCCHHHHHHHHHHHhcCCCCCCc
Q 042574 148 KVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQTEIATALKQSLPENE 226 (929)
Q Consensus 148 ~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~ 226 (929)
+.+..+...+. ++-+++.++|.-|+|||.+++.+..... -+.++-|.+.. ..+...+...|...+........
T Consensus 38 e~l~~l~~~i~-d~qg~~~vtGevGsGKTv~~Ral~~s~~-----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~ 111 (269)
T COG3267 38 EALLMLHAAIA-DGQGILAVTGEVGSGKTVLRRALLASLN-----EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNV 111 (269)
T ss_pred HHHHHHHHHHh-cCCceEEEEecCCCchhHHHHHHHHhcC-----CCceEEEEecCcchhHHHHHHHHHHHhccCccchh
Confidence 34444444443 4457999999999999999996555442 12222233333 34666777888887776221111
Q ss_pred --cHHHHHHHHHHHHHhcCc-EEEEEecCCCc--CCccccc---cCCCCCCCCcEEEEEeCcc-------cccccCC--c
Q 042574 227 --DKVRRAGRLSEMLKAKAK-FVLILDDMWEA--FPLEEVG---IPEPSEENGCKLVITTRSL-------GVSRSMD--C 289 (929)
Q Consensus 227 --~~~~~~~~l~~~l~~~~~-~LlvlDdv~~~--~~~~~l~---~~~~~~~~gs~ilvTtR~~-------~v~~~~~--~ 289 (929)
-.......+.....+++| ..++.||..+. ..++.+. ..-.++..--+|+..-..+ .+.+..+ .
T Consensus 112 ~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~ 191 (269)
T COG3267 112 NAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRI 191 (269)
T ss_pred HHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheE
Confidence 112223344444456677 99999998653 2222221 1111111111233322211 1111111 2
Q ss_pred ce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHHh
Q 042574 290 KE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVAS 344 (929)
Q Consensus 290 ~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 344 (929)
.- |.+.|++.++...+++.+........+-...+....|.....|.|.+|..++.
T Consensus 192 ~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 192 DIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred EEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 22 89999999999998888765553322333456778899999999999987653
No 155
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.46 E-value=0.00098 Score=79.56 Aligned_cols=154 Identities=20% Similarity=0.227 Sum_probs=89.4
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCC---CcEEEEEEECCCCCHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNK---FNVVIWVTVSQPLDLIKLQTEIA 215 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~~~wv~~s~~~~~~~~~~~i~ 215 (929)
..++|| +.++.++++.|......-+.++|++|+|||++|+.++......... .++.+|.. ++..++ +
T Consensus 186 ~~liGR--~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~ll---a 255 (758)
T PRK11034 186 DPLIGR--EKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSLL---A 255 (758)
T ss_pred CcCcCC--CHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHHh---c
Confidence 468999 7888999998877655566789999999999999999875322111 23344421 111111 0
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCc--------C--CccccccCCCCCCCCcEEEEEeCccc---
Q 042574 216 TALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEA--------F--PLEEVGIPEPSEENGCKLVITTRSLG--- 282 (929)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--------~--~~~~l~~~~~~~~~gs~ilvTtR~~~--- 282 (929)
+.. ...+...+...+...+.+.++.+|++|++..- . +...+..++...+ .-+||-+|...+
T Consensus 256 ---G~~--~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E~~~ 329 (758)
T PRK11034 256 ---GTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQEFSN 329 (758)
T ss_pred ---ccc--hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHHHHH
Confidence 111 11233344455555555556789999999632 1 1111222332222 234444444333
Q ss_pred -------ccccCCcceEecccCCHHHHHHHHHhhh
Q 042574 283 -------VSRSMDCKEIGVELLSQEEALNLFLDKV 310 (929)
Q Consensus 283 -------v~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 310 (929)
+.+++ ..+.++..+.+++.+++....
T Consensus 330 ~~~~D~AL~rRF--q~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 330 IFEKDRALARRF--QKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HhhccHHHHhhC--cEEEeCCCCHHHHHHHHHHHH
Confidence 22322 238999999999999998653
No 156
>PRK08118 topology modulation protein; Reviewed
Probab=97.46 E-value=6.7e-05 Score=72.59 Aligned_cols=36 Identities=28% Similarity=0.664 Sum_probs=29.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEE
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIW 198 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 198 (929)
+.|.|+|++|+||||||+++++......-+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 368999999999999999999987444456777776
No 157
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.45 E-value=2e-05 Score=88.95 Aligned_cols=147 Identities=29% Similarity=0.358 Sum_probs=93.6
Q ss_pred ccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCccccccccccee
Q 042574 495 WEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSL 574 (929)
Q Consensus 495 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L 574 (929)
...+++.+++.+|.+..+... ...+++|++|++++|. +..+.. +..++.|+.|++++|.|..+. .+..+..|+.+
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~-I~~i~~--l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l 167 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNK-ITKLEG--LSTLTLLKELNLSGNLISDIS-GLESLKSLKLL 167 (414)
T ss_pred cccceeeeeccccchhhcccc-hhhhhcchheeccccc-cccccc--hhhccchhhheeccCcchhcc-CCccchhhhcc
Confidence 345678888888887776542 2367888888888886 555544 346777888888888877664 35557888888
Q ss_pred ecccccccccCcc--ccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCC--ccEEEeecCC
Q 042574 575 LLRWCRRLKRVPS--VAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRN--LYKLKLSFGN 650 (929)
Q Consensus 575 ~l~~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~l~~~~ 650 (929)
++++|. +..+.. +..+.+|+.+.+.+|.+..+. .+..+..+..+++..|.++.+.. +..+.. |+.+++..+.
T Consensus 168 ~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 168 DLSYNR-IVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNR 243 (414)
T ss_pred cCCcch-hhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCc
Confidence 888864 344443 577788888888887666542 23334444444555665554432 223333 6666666554
No 158
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.45 E-value=0.0017 Score=73.03 Aligned_cols=150 Identities=16% Similarity=0.223 Sum_probs=86.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhc
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAK 242 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 242 (929)
.-+.|+|+.|+|||+||+.+++..... ...+++++. ..+...+...+... . ...+...+ .
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~---~~~v~yi~~------~~f~~~~~~~l~~~-----~----~~~f~~~~--~ 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES---GGKILYVRS------ELFTEHLVSAIRSG-----E----MQRFRQFY--R 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc---CCCEEEeeH------HHHHHHHHHHHhcc-----h----HHHHHHHc--c
Confidence 568899999999999999999987321 233556642 33444444444311 1 11222222 2
Q ss_pred CcEEEEEecCCCcCC----ccccccCCCC-CCCCcEEEEEeCcc---------cccccCCcce-EecccCCHHHHHHHHH
Q 042574 243 AKFVLILDDMWEAFP----LEEVGIPEPS-EENGCKLVITTRSL---------GVSRSMDCKE-IGVELLSQEEALNLFL 307 (929)
Q Consensus 243 ~~~LlvlDdv~~~~~----~~~l~~~~~~-~~~gs~ilvTtR~~---------~v~~~~~~~~-~~l~~L~~~~~~~Lf~ 307 (929)
..-+|++||+..... .+.+...+.. ...|..||+||... .+..++.... +.+++++.++...+++
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 355889999864321 1222222110 02355788888542 2233444444 8899999999999998
Q ss_pred hhhcccCCCCCcchHHHHHHHHHhcCCc
Q 042574 308 DKVRISTSQIPNLDKEIINSVVEECDGL 335 (929)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 335 (929)
+++..... .-.+++..-|+..+.|.
T Consensus 282 ~k~~~~~~---~l~~evl~~la~~~~~d 306 (445)
T PRK12422 282 RKAEALSI---RIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHcCC---CCCHHHHHHHHHhcCCC
Confidence 87755322 12245666677766644
No 159
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.0028 Score=74.26 Aligned_cols=193 Identities=14% Similarity=0.164 Sum_probs=102.7
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
..++|. +..+..|..++..+.. +.+.++|+.|+||||+|+.++..+... ..+... ....+.-...+.|...
T Consensus 16 ~~liGq--~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~--~~~~~~----~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 16 DELVGQ--EAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL--NSDKPT----PEPCGKCELCRAIAAG 87 (620)
T ss_pred hhccCh--HHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC--CcCCCC----CCCCcccHHHHHHhcC
Confidence 678897 6677788888877653 678999999999999999999987321 110000 0011111122222211
Q ss_pred hcCCC---CC-CccHHHHHHHHHHHHH----hcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEE-EeCccccccc
Q 042574 218 LKQSL---PE-NEDKVRRAGRLSEMLK----AKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVI-TTRSLGVSRS 286 (929)
Q Consensus 218 l~~~~---~~-~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilv-TtR~~~v~~~ 286 (929)
..... .. .......++.+..... .+++-++|+|++.... ..+.+...+..-.....+|+ |+....+...
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHH
Confidence 11100 00 0111122222322221 2456688999997532 23333322222223444554 4433333222
Q ss_pred CC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHH
Q 042574 287 MD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTV 342 (929)
Q Consensus 287 ~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 342 (929)
.. +..+++..++.++....+...+..... ....+.+..|++.++|.+..+...
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~kegi---~is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKESI---EIEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22 223788899999988888776654322 112456788999999987555433
No 160
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.44 E-value=0.00054 Score=79.51 Aligned_cols=46 Identities=28% Similarity=0.297 Sum_probs=36.5
Q ss_pred ccccccchHHHHHHHHHHhcCC-----CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGD-----KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~-----~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+++|. ++.++++..++... ..+++.|+|++|+||||+++.++...
T Consensus 84 del~~~--~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 84 HELAVH--KKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHhcCc--HHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 678886 56677777777542 24679999999999999999999876
No 161
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.40 E-value=0.0011 Score=73.80 Aligned_cols=129 Identities=16% Similarity=0.176 Sum_probs=71.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKA 241 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (929)
.+-|.++|++|+|||++|+.+++... ..| +.+..+. + ..... .........+......
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~el~---~~f---i~V~~se------L----~~k~~------Ge~~~~vr~lF~~A~~ 274 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANETS---ATF---LRVVGSE------L----IQKYL------GDGPKLVRELFRVAEE 274 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC---CCE---EEEecch------h----hhhhc------chHHHHHHHHHHHHHh
Confidence 46788999999999999999999762 233 2221111 1 11110 0112223333333334
Q ss_pred cCcEEEEEecCCCcC----C------------ccccccCCC--CCCCCcEEEEEeCcccccc-c-C---Ccce-EecccC
Q 042574 242 KAKFVLILDDMWEAF----P------------LEEVGIPEP--SEENGCKLVITTRSLGVSR-S-M---DCKE-IGVELL 297 (929)
Q Consensus 242 ~~~~LlvlDdv~~~~----~------------~~~l~~~~~--~~~~gs~ilvTtR~~~v~~-~-~---~~~~-~~l~~L 297 (929)
..+.+|+||+++... . +..+...+. ....+.+||+||...+... . . .... +.+...
T Consensus 275 ~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~P 354 (438)
T PTZ00361 275 NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNP 354 (438)
T ss_pred CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCC
Confidence 578899999985311 0 001111111 1123567888877543321 1 1 1122 889999
Q ss_pred CHHHHHHHHHhhhcc
Q 042574 298 SQEEALNLFLDKVRI 312 (929)
Q Consensus 298 ~~~~~~~Lf~~~~~~ 312 (929)
+.++..++|..+...
T Consensus 355 d~~~R~~Il~~~~~k 369 (438)
T PTZ00361 355 DEKTKRRIFEIHTSK 369 (438)
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999876543
No 162
>PRK08181 transposase; Validated
Probab=97.38 E-value=0.0042 Score=64.68 Aligned_cols=78 Identities=21% Similarity=0.163 Sum_probs=46.8
Q ss_pred HHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHH
Q 042574 155 EDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGR 234 (929)
Q Consensus 155 ~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 234 (929)
+|+.. ..-+.|+|++|+|||.||..+.+.... ....+.|+++ .++...+..... ... ...
T Consensus 101 ~~~~~--~~nlll~Gp~GtGKTHLa~Aia~~a~~---~g~~v~f~~~------~~L~~~l~~a~~-----~~~----~~~ 160 (269)
T PRK08181 101 SWLAK--GANLLLFGPPGGGKSHLAAAIGLALIE---NGWRVLFTRT------TDLVQKLQVARR-----ELQ----LES 160 (269)
T ss_pred HHHhc--CceEEEEecCCCcHHHHHHHHHHHHHH---cCCceeeeeH------HHHHHHHHHHHh-----CCc----HHH
Confidence 45543 345999999999999999999998732 2234566643 445554433211 111 112
Q ss_pred HHHHHHhcCcEEEEEecCCC
Q 042574 235 LSEMLKAKAKFVLILDDMWE 254 (929)
Q Consensus 235 l~~~l~~~~~~LlvlDdv~~ 254 (929)
..+.+ .+.=||||||+..
T Consensus 161 ~l~~l--~~~dLLIIDDlg~ 178 (269)
T PRK08181 161 AIAKL--DKFDLLILDDLAY 178 (269)
T ss_pred HHHHH--hcCCEEEEecccc
Confidence 33333 2456999999953
No 163
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.0028 Score=74.04 Aligned_cols=191 Identities=15% Similarity=0.207 Sum_probs=100.1
Q ss_pred ccccccchHHHHHHHHHHhcCCCe-eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKV-TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
.+++|. +..++.|..++..+.+ +.+.++|+.|+||||+|+.+++....... .+ ....+.-.....|...
T Consensus 16 ~~iiGq--~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~-~~-------~~~c~~c~~c~~i~~g 85 (576)
T PRK14965 16 SDLTGQ--EHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQG-LT-------AEPCNVCPPCVEITEG 85 (576)
T ss_pred HHccCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCC-CC-------CCCCCccHHHHHHhcC
Confidence 678997 6677888888877764 56789999999999999999887631110 00 0000000000011000
Q ss_pred hcCC---CCC-CccHHHHHHHHHHHHH----hcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEE-EEeCccccccc
Q 042574 218 LKQS---LPE-NEDKVRRAGRLSEMLK----AKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLV-ITTRSLGVSRS 286 (929)
Q Consensus 218 l~~~---~~~-~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~il-vTtR~~~v~~~ 286 (929)
-..+ ... .......+..+..... .+++-++|+|++.... ..+.+...+..-...+.+| +||....+...
T Consensus 86 ~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~t 165 (576)
T PRK14965 86 RSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPIT 165 (576)
T ss_pred CCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHH
Confidence 0000 000 0001111222222221 2455688999996532 2222222222112344555 55555544432
Q ss_pred CC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCcc-HHHHHH
Q 042574 287 MD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLP-LAIVTV 342 (929)
Q Consensus 287 ~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~ 342 (929)
.. +..+++.+++.++....+...+..... .-..+.+..|++.++|.. .|+..+
T Consensus 166 I~SRc~~~~f~~l~~~~i~~~L~~i~~~egi---~i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 166 ILSRCQRFDFRRIPLQKIVDRLRYIADQEGI---SISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 222888999999988888776544321 122456777889998865 444443
No 164
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.36 E-value=0.00043 Score=64.29 Aligned_cols=68 Identities=25% Similarity=0.312 Sum_probs=41.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcC-
Q 042574 165 IGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKA- 243 (929)
Q Consensus 165 v~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~- 243 (929)
|.|+|++|+||||+|+.+++... + ..+.++.+.-.+ ....+.......+.+......
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~-----~-~~~~i~~~~~~~----------------~~~~~~~~~i~~~~~~~~~~~~ 58 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG-----F-PFIEIDGSELIS----------------SYAGDSEQKIRDFFKKAKKSAK 58 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT-----S-EEEEEETTHHHT----------------SSTTHHHHHHHHHHHHHHHTST
T ss_pred CEEECcCCCCeeHHHHHHHhhcc-----c-cccccccccccc----------------cccccccccccccccccccccc
Confidence 57999999999999999999862 1 134444322110 012233334444444443344
Q ss_pred cEEEEEecCCC
Q 042574 244 KFVLILDDMWE 254 (929)
Q Consensus 244 ~~LlvlDdv~~ 254 (929)
+.+|++||++.
T Consensus 59 ~~vl~iDe~d~ 69 (132)
T PF00004_consen 59 PCVLFIDEIDK 69 (132)
T ss_dssp SEEEEEETGGG
T ss_pred ceeeeeccchh
Confidence 89999999964
No 165
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.33 E-value=0.0017 Score=79.55 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=87.0
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhc--C--CCcEEEEEEECCCCCHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKET--N--KFNVVIWVTVSQPLDLIKLQTEI 214 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~--~f~~~~wv~~s~~~~~~~~~~~i 214 (929)
.+++|| +.++.++++.|......-+.++|++|+||||+|+.++....... . .-..++++..+. +..
T Consensus 178 ~~vigr--~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l~a-- 247 (857)
T PRK10865 178 DPVIGR--DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LVA-- 247 (857)
T ss_pred CcCCCC--HHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------hhh--
Confidence 578999 77899999999887777788999999999999999999862110 0 011233333221 110
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHHH-hcCcEEEEEecCCCcC---------CccccccCCCCCCCCcEEEEEeCcccc-
Q 042574 215 ATALKQSLPENEDKVRRAGRLSEMLK-AKAKFVLILDDMWEAF---------PLEEVGIPEPSEENGCKLVITTRSLGV- 283 (929)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~---------~~~~l~~~~~~~~~gs~ilvTtR~~~v- 283 (929)
+. ....+...+...+...+. .+++.+|++|++..-. +...+..|....+ .-++|-||...+.
T Consensus 248 ----g~--~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt~~e~r 320 (857)
T PRK10865 248 ----GA--KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTLDEYR 320 (857)
T ss_pred ----cc--chhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCCCHHHH
Confidence 00 011122334444444432 3568999999986421 1222333333222 2344444443332
Q ss_pred ---------cccCCcceEecccCCHHHHHHHHHhhh
Q 042574 284 ---------SRSMDCKEIGVELLSQEEALNLFLDKV 310 (929)
Q Consensus 284 ---------~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 310 (929)
.+.+ ..+.+..-+.++...+++...
T Consensus 321 ~~~~~d~al~rRf--~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 321 QYIEKDAALERRF--QKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHhhhcHHHHhhC--CEEEeCCCCHHHHHHHHHHHh
Confidence 1222 126666668899988886543
No 166
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.33 E-value=0.0019 Score=79.42 Aligned_cols=152 Identities=13% Similarity=0.166 Sum_probs=87.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCC----CcEEEE-EEECCCCCHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNK----FNVVIW-VTVSQPLDLIKLQTE 213 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~----f~~~~w-v~~s~~~~~~~~~~~ 213 (929)
..++|| +.++.++++.|......-+.++|++|+|||++|..++.+... ... ....+| +.+ ..+..
T Consensus 173 ~~~igr--~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~-~~~p~~l~~~~~~~l~~------~~l~a- 242 (852)
T TIGR03346 173 DPVIGR--DEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN-GDVPESLKNKRLLALDM------GALIA- 242 (852)
T ss_pred CcCCCc--HHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc-cCCchhhcCCeEEEeeH------HHHhh-
Confidence 568999 678999999998776677789999999999999999988622 110 112222 221 11110
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHHHh-cCcEEEEEecCCCcC---------CccccccCCCCCCCCcEEEEEeCcccc
Q 042574 214 IATALKQSLPENEDKVRRAGRLSEMLKA-KAKFVLILDDMWEAF---------PLEEVGIPEPSEENGCKLVITTRSLGV 283 (929)
Q Consensus 214 i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~---------~~~~l~~~~~~~~~gs~ilvTtR~~~v 283 (929)
+.. ...+...+...+...+.+ +++.+|++|++..-. +...+..|....+ .-++|-+|...+.
T Consensus 243 -----~~~--~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~~e~ 314 (852)
T TIGR03346 243 -----GAK--YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTLDEY 314 (852)
T ss_pred -----cch--hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcHHHH
Confidence 000 011233344455555432 468999999997421 1112223333222 2344444443322
Q ss_pred ----------cccCCcceEecccCCHHHHHHHHHhhh
Q 042574 284 ----------SRSMDCKEIGVELLSQEEALNLFLDKV 310 (929)
Q Consensus 284 ----------~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 310 (929)
.+.+ ..+.++..+.++...++....
T Consensus 315 r~~~~~d~al~rRf--~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 315 RKYIEKDAALERRF--QPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHhhcCHHHHhcC--CEEEeCCCCHHHHHHHHHHHH
Confidence 2222 127888889999999887653
No 167
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.30 E-value=0.0012 Score=65.25 Aligned_cols=172 Identities=17% Similarity=0.211 Sum_probs=97.9
Q ss_pred ccccccch-HHHHHHHHHHhcCC------CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHH
Q 042574 139 ATLAGKKT-KKVVERIWEDLMGD------KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQ 211 (929)
Q Consensus 139 ~~~vGr~~-~~~~~~l~~~l~~~------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 211 (929)
.+++|.+. .....-|++.|.++ .++-|..+|++|.|||.+|+++++... -.| +-|. ..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k---vp~---l~vk---------at 185 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK---VPL---LLVK---------AT 185 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC---Cce---EEec---------hH
Confidence 67888743 22344577778764 378999999999999999999999862 222 1111 11
Q ss_pred HHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCc----------CC----ccccccCCCC--CCCCcEEE
Q 042574 212 TEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEA----------FP----LEEVGIPEPS--EENGCKLV 275 (929)
Q Consensus 212 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~----------~~----~~~l~~~~~~--~~~gs~il 275 (929)
+-|.+.+ .+...++..+...-.+.-++++++|.++.- .+ ...+...+.. .+.|..-|
T Consensus 186 ~liGehV-------Gdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 186 ELIGEHV-------GDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred HHHHHHh-------hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 2222222 345666777777666667999999998631 11 1222222221 23454445
Q ss_pred EEeCcccccc-cCCcce---EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCcc
Q 042574 276 ITTRSLGVSR-SMDCKE---IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLP 336 (929)
Q Consensus 276 vTtR~~~v~~-~~~~~~---~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 336 (929)
-.|.+.+... ...... |+..--+++|-..++...+..-.. ....-.+.++++.+|+-
T Consensus 259 aaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Pl----pv~~~~~~~~~~t~g~S 319 (368)
T COG1223 259 AATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPL----PVDADLRYLAAKTKGMS 319 (368)
T ss_pred eecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCC----ccccCHHHHHHHhCCCC
Confidence 4454433322 222221 566666788888888777643221 11222445666666653
No 168
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.30 E-value=0.00013 Score=86.07 Aligned_cols=128 Identities=19% Similarity=0.133 Sum_probs=88.7
Q ss_pred CcccEEEcccCCc-CccCcHHHHccCCCCcEEEecCCCCc--ccCcccccccccceeecccccccccCccccccCCCCEE
Q 042574 521 KILSTLLLQRNGY-LQRIPECFFMHMRGLKVLNLSHTNIE--VLPSSVSNLTNLRSLLLRWCRRLKRVPSVAKLLALQYL 597 (929)
Q Consensus 521 ~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 597 (929)
.+|+.|++++... ....|..+...+|+|+.|.+++-.+. .+..-..++++|..||++++ .++.+..+++|++|++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcHHHhccccHHHH
Confidence 5788888888653 33455666567899999999887654 33333467888999999985 66777778899999999
Q ss_pred EccCCCCcccc--ccccCCCCCCEEEccCCCCccCCC------CccCCCCCccEEEeecC
Q 042574 598 DLERTWIEEVP--EGMEMLENLSHLYLSSPPLKKFPT------GILPRLRNLYKLKLSFG 649 (929)
Q Consensus 598 ~l~~~~i~~lp--~~i~~l~~L~~L~l~~~~~~~~~~------~~l~~l~~L~~L~l~~~ 649 (929)
.+.+=.++.-. ..+.+|++|++||++.......+. ..-..|++|+.|+.+..
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 88776665432 357788999999998754332221 00134788888888743
No 169
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.004 Score=67.80 Aligned_cols=155 Identities=15% Similarity=0.204 Sum_probs=91.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHH-
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLK- 240 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~- 240 (929)
...+.+.|++|+|||+||.+++.. ..|..+--++..+-. ...+......+.+.+.
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSpe~mi-------------------G~sEsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISPEDMI-------------------GLSESAKCAHIKKIFED 593 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeChHHcc-------------------CccHHHHHHHHHHHHHH
Confidence 667889999999999999998875 467665444321111 1112222222322222
Q ss_pred --hcCcEEEEEecCCCcCCccccccCC---------------CCCCCCcEEEEEeCcccccccCCcce-----EecccCC
Q 042574 241 --AKAKFVLILDDMWEAFPLEEVGIPE---------------PSEENGCKLVITTRSLGVSRSMDCKE-----IGVELLS 298 (929)
Q Consensus 241 --~~~~~LlvlDdv~~~~~~~~l~~~~---------------~~~~~gs~ilvTtR~~~v~~~~~~~~-----~~l~~L~ 298 (929)
+..--.||+||+....+|-.++..+ |..++.--|+-||....|.+.|+-.. |.++.++
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 3456789999998776666554333 22233333445777777877776332 8899988
Q ss_pred H-HHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHHhhh
Q 042574 299 Q-EEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVASCM 346 (929)
Q Consensus 299 ~-~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 346 (929)
. ++..+.+...--- .+...+.++++...+| +-..|+.+-.++
T Consensus 674 ~~~~~~~vl~~~n~f----sd~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 674 TGEQLLEVLEELNIF----SDDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred chHHHHHHHHHccCC----CcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 7 7777777654211 1334556667777666 333444444443
No 170
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.29 E-value=0.0042 Score=74.85 Aligned_cols=46 Identities=28% Similarity=0.305 Sum_probs=36.8
Q ss_pred ccccccchHHHHHHHHHHhcC------CCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMG------DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...+|. ++.+++|++++.. ....++.++|++|+||||+|+.++...
T Consensus 322 ~~~~g~--~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 322 TDHYGL--ERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhccCH--HHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457786 6778888877642 245689999999999999999999876
No 171
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.27 E-value=0.0029 Score=70.09 Aligned_cols=149 Identities=13% Similarity=0.156 Sum_probs=79.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKA 241 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (929)
.+-|.++|++|+|||++|+.+++... ..| +.+.. ..+ ..... .........+......
T Consensus 179 pkgvLL~GppGTGKT~LAkalA~~l~---~~f---i~i~~------s~l----~~k~~------ge~~~~lr~lf~~A~~ 236 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVAHHTT---ATF---IRVVG------SEF----VQKYL------GEGPRMVRDVFRLARE 236 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcC---CCE---EEEeh------HHH----HHHhc------chhHHHHHHHHHHHHh
Confidence 57899999999999999999998752 222 22211 111 11110 0112233334444445
Q ss_pred cCcEEEEEecCCCcC--------C--------ccccccCCC--CCCCCcEEEEEeCccccc-cc-C---Ccce-EecccC
Q 042574 242 KAKFVLILDDMWEAF--------P--------LEEVGIPEP--SEENGCKLVITTRSLGVS-RS-M---DCKE-IGVELL 297 (929)
Q Consensus 242 ~~~~LlvlDdv~~~~--------~--------~~~l~~~~~--~~~~gs~ilvTtR~~~v~-~~-~---~~~~-~~l~~L 297 (929)
..+.+|+||+++... . +..+...+. ....+..||+||...+.. .. . .-.. +.++..
T Consensus 237 ~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P 316 (398)
T PTZ00454 237 NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 316 (398)
T ss_pred cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCc
Confidence 678999999986420 0 011111111 122456778777754322 11 1 1222 888889
Q ss_pred CHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCcc
Q 042574 298 SQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLP 336 (929)
Q Consensus 298 ~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 336 (929)
+.++...+|.............+ ..++++.+.|.-
T Consensus 317 ~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 317 DRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 99998888886654322111222 334566665553
No 172
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.26 E-value=0.0026 Score=70.80 Aligned_cols=132 Identities=23% Similarity=0.237 Sum_probs=81.3
Q ss_pred HHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCC-CHHHHHHHHHHHhcCCCCCCc
Q 042574 148 KVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQTEIATALKQSLPENE 226 (929)
Q Consensus 148 ~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~ 226 (929)
....++.+.+..... ++.|.|+-++||||+++.+..... +. .+++..-+.. +-.++ .+...
T Consensus 24 ~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~---~~---~iy~~~~d~~~~~~~l-~d~~~---------- 85 (398)
T COG1373 24 KLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLL---EE---IIYINFDDLRLDRIEL-LDLLR---------- 85 (398)
T ss_pred hhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCC---cc---eEEEEecchhcchhhH-HHHHH----------
Confidence 344555555554444 999999999999999977666542 11 4555433321 11111 11111
Q ss_pred cHHHHHHHHHHHHHhcCcEEEEEecCCCcCCccccccCCCCCCCCcEEEEEeCccccc-----ccCCcce--EecccCCH
Q 042574 227 DKVRRAGRLSEMLKAKAKFVLILDDMWEAFPLEEVGIPEPSEENGCKLVITTRSLGVS-----RSMDCKE--IGVELLSQ 299 (929)
Q Consensus 227 ~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~-----~~~~~~~--~~l~~L~~ 299 (929)
...... ..++..++||.|.....|+.....+.+.++. +|++|+-+.... +...... +.+-||+.
T Consensus 86 -------~~~~~~-~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF 156 (398)
T COG1373 86 -------AYIELK-EREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSF 156 (398)
T ss_pred -------HHHHhh-ccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCH
Confidence 111111 1267899999999999998877666655555 888888875432 2222223 89999999
Q ss_pred HHHHHHH
Q 042574 300 EEALNLF 306 (929)
Q Consensus 300 ~~~~~Lf 306 (929)
.|-..+-
T Consensus 157 ~Efl~~~ 163 (398)
T COG1373 157 REFLKLK 163 (398)
T ss_pred HHHHhhc
Confidence 8887654
No 173
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.25 E-value=0.00069 Score=64.68 Aligned_cols=100 Identities=22% Similarity=0.285 Sum_probs=50.7
Q ss_pred cccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccc-cccccceeeccccccc--ccCccccccCCCCEEE
Q 042574 522 ILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVS-NLTNLRSLLLRWCRRL--KRVPSVAKLLALQYLD 598 (929)
Q Consensus 522 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~-~l~~L~~L~l~~~~~~--~~~~~~~~l~~L~~L~ 598 (929)
+...++++.|. +..++. |..++.|..|.+++|.|+.+-..+. .+++|..|.|.+|... ..+..+..++.|++|.
T Consensus 43 ~~d~iDLtdNd-l~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDND-LRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccc-hhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 34445555554 333322 3455555556666665555533332 2344556655554321 1222345556666666
Q ss_pred ccCCCCccccc----cccCCCCCCEEEccC
Q 042574 599 LERTWIEEVPE----GMEMLENLSHLYLSS 624 (929)
Q Consensus 599 l~~~~i~~lp~----~i~~l~~L~~L~l~~ 624 (929)
+-+|.++.-+. -+..+++|+.||...
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 66665553322 256667777777654
No 174
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.23 E-value=0.0026 Score=68.29 Aligned_cols=102 Identities=13% Similarity=0.154 Sum_probs=66.5
Q ss_pred HHHHHHhcC-CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcE-EEEEEECCC-CCHHHHHHHHHHHhcCCCCCCcc
Q 042574 151 ERIWEDLMG-DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNV-VIWVTVSQP-LDLIKLQTEIATALKQSLPENED 227 (929)
Q Consensus 151 ~~l~~~l~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~ 227 (929)
.++++.+.- +....+.|+|.+|+|||||++++++.... ++-+. ++|+.+.+. ..+.++.+.+...+.....+...
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~--~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAA--NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHh--cCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 446666543 34467899999999999999999998732 22233 477777765 46788888888877654432222
Q ss_pred HHH-----HHHHHHHHH-HhcCcEEEEEecCCC
Q 042574 228 KVR-----RAGRLSEML-KAKAKFVLILDDMWE 254 (929)
Q Consensus 228 ~~~-----~~~~l~~~l-~~~~~~LlvlDdv~~ 254 (929)
... .+..+.+.+ ..+++++||+|++..
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 111 122233333 358999999999853
No 175
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.016 Score=66.14 Aligned_cols=153 Identities=22% Similarity=0.237 Sum_probs=82.1
Q ss_pred cccccchHHHHHHHHHHhcC------CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHH
Q 042574 140 TLAGKKTKKVVERIWEDLMG------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTE 213 (929)
Q Consensus 140 ~~vGr~~~~~~~~l~~~l~~------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 213 (929)
+=+|- ++.+++|++.|.- -..+++.+||++|+|||+|++.++.... ..| +-++++.--|..++...
T Consensus 324 dHYGL--ekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~---Rkf---vR~sLGGvrDEAEIRGH 395 (782)
T COG0466 324 DHYGL--EKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG---RKF---VRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccCc--hhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC---CCE---EEEecCccccHHHhccc
Confidence 34554 7788899988842 2357999999999999999999999873 233 33444544444333210
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHHH--hcCcEEEEEecCCCcCC----------cc--------ccccCCCCC-CCCc
Q 042574 214 IATALKQSLPENEDKVRRAGRLSEMLK--AKAKFVLILDDMWEAFP----------LE--------EVGIPEPSE-ENGC 272 (929)
Q Consensus 214 i~~~l~~~~~~~~~~~~~~~~l~~~l~--~~~~~LlvlDdv~~~~~----------~~--------~l~~~~~~~-~~gs 272 (929)
...+-... .. ++.+.+. +.+.=+++||.++.... ++ .+...+..- --=|
T Consensus 396 -----RRTYIGam--PG---rIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 396 -----RRTYIGAM--PG---KIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred -----cccccccC--Ch---HHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchh
Confidence 00000011 11 1222222 34567889999974210 11 111111000 0124
Q ss_pred EEE-EEeCcc-c-cc-ccCCcce-EecccCCHHHHHHHHHhhh
Q 042574 273 KLV-ITTRSL-G-VS-RSMDCKE-IGVELLSQEEALNLFLDKV 310 (929)
Q Consensus 273 ~il-vTtR~~-~-v~-~~~~~~~-~~l~~L~~~~~~~Lf~~~~ 310 (929)
+|+ |||-+. + +. ..++-.. |++.+-+++|-.++-+++.
T Consensus 466 ~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred heEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 444 444432 1 21 1122223 8999999999888877764
No 176
>CHL00176 ftsH cell division protein; Validated
Probab=97.20 E-value=0.0049 Score=72.30 Aligned_cols=171 Identities=16% Similarity=0.206 Sum_probs=92.4
Q ss_pred ccccccch-HHHHHHHHHHhcCCC---------eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHH
Q 042574 139 ATLAGKKT-KKVVERIWEDLMGDK---------VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLI 208 (929)
Q Consensus 139 ~~~vGr~~-~~~~~~l~~~l~~~~---------~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 208 (929)
.++.|.+. .+.+.+++..+.... .+-|.++|++|+|||++|+.+++... .. |+.++. .
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~---~p-----~i~is~----s 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAE---VP-----FFSISG----S 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC---CC-----eeeccH----H
Confidence 56778632 344556666665422 45699999999999999999988751 11 222221 1
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC----------------CccccccCCC--CCCC
Q 042574 209 KLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF----------------PLEEVGIPEP--SEEN 270 (929)
Q Consensus 209 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~----------------~~~~l~~~~~--~~~~ 270 (929)
++.... .+ ........+........+.+|++||++.-. .+..+...+. ....
T Consensus 251 ~f~~~~---~g-------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~ 320 (638)
T CHL00176 251 EFVEMF---VG-------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK 320 (638)
T ss_pred HHHHHh---hh-------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC
Confidence 111100 00 011223333444445678999999996421 0111211111 1234
Q ss_pred CcEEEEEeCcccc-cccC----Ccce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCc
Q 042574 271 GCKLVITTRSLGV-SRSM----DCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGL 335 (929)
Q Consensus 271 gs~ilvTtR~~~v-~~~~----~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 335 (929)
+..||.||...+. ...+ .-.. +.++..+.++-.++++.++..... ........+++.+.|.
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~----~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL----SPDVSLELIARRTPGF 387 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc----chhHHHHHHHhcCCCC
Confidence 5566666655332 1111 1122 788888999999999887755321 1123356677777763
No 177
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.20 E-value=0.0011 Score=67.07 Aligned_cols=36 Identities=31% Similarity=0.502 Sum_probs=30.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEE
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 201 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 201 (929)
-.++|+|..|+|||||+..+.... .+.|.++++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 468999999999999999998876 467888877754
No 178
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.19 E-value=0.022 Score=57.23 Aligned_cols=49 Identities=24% Similarity=0.420 Sum_probs=36.2
Q ss_pred ccccccccchHHHHHHH----HHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 137 TTATLAGKKTKKVVERI----WEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 137 ~~~~~vGr~~~~~~~~l----~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
+...++|- +..++.+ ..++......-|.+||..|+|||++++++.+.+.
T Consensus 25 ~l~~L~Gi--e~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~ 77 (249)
T PF05673_consen 25 RLDDLIGI--ERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYA 77 (249)
T ss_pred CHHHhcCH--HHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHh
Confidence 34788996 3444444 3455555566788899999999999999999873
No 179
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.18 E-value=0.017 Score=70.41 Aligned_cols=46 Identities=39% Similarity=0.398 Sum_probs=35.1
Q ss_pred ccccccchHHHHHHHHHHhc------CCCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLM------GDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~------~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...+|. +..++++.+++. ....+++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~--~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGL--KKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCCh--HHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457786 566677766553 1234689999999999999999999987
No 180
>PRK08116 hypothetical protein; Validated
Probab=97.15 E-value=0.00073 Score=70.80 Aligned_cols=101 Identities=29% Similarity=0.302 Sum_probs=57.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhc
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAK 242 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 242 (929)
..+.++|.+|+|||.||..+++..... ...+++++ ..+++..|........ ..+ ...+.+.+. +
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~------~~~ll~~i~~~~~~~~--~~~----~~~~~~~l~-~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVN------FPQLLNRIKSTYKSSG--KED----ENEIIRSLV-N 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEE------HHHHHHHHHHHHhccc--ccc----HHHHHHHhc-C
Confidence 458999999999999999999998422 33456665 3445555554443211 111 112334442 2
Q ss_pred CcEEEEEecCCC--cCCcc--ccccCCCC-CCCCcEEEEEeCc
Q 042574 243 AKFVLILDDMWE--AFPLE--EVGIPEPS-EENGCKLVITTRS 280 (929)
Q Consensus 243 ~~~LlvlDdv~~--~~~~~--~l~~~~~~-~~~gs~ilvTtR~ 280 (929)
-=||||||+-. ..+|. .+..-+.. ...|..+||||..
T Consensus 179 -~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 179 -ADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred -CCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 23899999942 23332 12211111 1345679999864
No 181
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.14 E-value=0.00073 Score=64.51 Aligned_cols=104 Identities=22% Similarity=0.280 Sum_probs=73.1
Q ss_pred CCCCcEEEecCCCCcccCcccccccccceeecccccccccCcccc-ccCCCCEEEccCCCCccccc--cccCCCCCCEEE
Q 042574 545 MRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLRWCRRLKRVPSVA-KLLALQYLDLERTWIEEVPE--GMEMLENLSHLY 621 (929)
Q Consensus 545 l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~ 621 (929)
+...-.+||++|.+..++ .+..++.|.+|.+.+|.....-|.+. .+++|..|.+.+|+|.++-. .+..+++|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 345567888888877665 46678888888888876555555544 35678888888887775532 366778888888
Q ss_pred ccCCCCccCC---CCccCCCCCccEEEeecC
Q 042574 622 LSSPPLKKFP---TGILPRLRNLYKLKLSFG 649 (929)
Q Consensus 622 l~~~~~~~~~---~~~l~~l~~L~~L~l~~~ 649 (929)
+-+|++..-. .-++.++++|+.|++...
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 8888765432 234678888888888744
No 182
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.12 E-value=6.4e-05 Score=66.76 Aligned_cols=81 Identities=26% Similarity=0.364 Sum_probs=66.5
Q ss_pred cccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceeecc
Q 042574 498 NLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLR 577 (929)
Q Consensus 498 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~ 577 (929)
.+..+++++|.++++|..+..+++.+++|++.+|. +..+|..+ ..++.||.|+++.|++...|.-|..|.+|-+|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~-Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEEL-AAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHH-hhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 36678889999998888887788888889998886 78888884 78889999999999888888877778888777777
Q ss_pred ccc
Q 042574 578 WCR 580 (929)
Q Consensus 578 ~~~ 580 (929)
+|.
T Consensus 132 ~na 134 (177)
T KOG4579|consen 132 ENA 134 (177)
T ss_pred CCc
Confidence 653
No 183
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.12 E-value=0.0045 Score=66.73 Aligned_cols=155 Identities=15% Similarity=0.188 Sum_probs=85.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCC------------------CcEEEEEEECCCCCHHHHHHHHHHHhcCCCC
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNK------------------FNVVIWVTVSQPLDLIKLQTEIATALKQSLP 223 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~------------------f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 223 (929)
.+.+.++|+.|+||||+|+.++....-.... ..-..|+.-...
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~------------------- 82 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA------------------- 82 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-------------------
Confidence 5688999999999999999998887321100 000122211000
Q ss_pred CCccHHHHHHHHHHHHH----hcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEEEeCcc-cccccCC--cceEec
Q 042574 224 ENEDKVRRAGRLSEMLK----AKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVITTRSL-GVSRSMD--CKEIGV 294 (929)
Q Consensus 224 ~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~-~v~~~~~--~~~~~l 294 (929)
...-..+.++.+.+.+. .+++-++|+|+++... ....+...+..-..++.+|+||.+. .+..... +..+.+
T Consensus 83 ~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~ 162 (328)
T PRK05707 83 DKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQAC 162 (328)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeC
Confidence 00011222233333322 2344455779997642 2222222222112456666666654 3432222 333999
Q ss_pred ccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHH
Q 042574 295 ELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTV 342 (929)
Q Consensus 295 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 342 (929)
.+++.+++.+.+.+..... ..+.+..++..++|.|..+..+
T Consensus 163 ~~~~~~~~~~~L~~~~~~~-------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 163 PLPSNEESLQWLQQALPES-------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CCcCHHHHHHHHHHhcccC-------ChHHHHHHHHHcCCCHHHHHHH
Confidence 9999999999987653111 1334567889999999766544
No 184
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.00024 Score=71.49 Aligned_cols=103 Identities=23% Similarity=0.191 Sum_probs=54.7
Q ss_pred CCcEEEecCCCCcccCc--cc-ccccccceeecccccccc--cCc-cccccCCCCEEEccCCCCccccccc-cCCCCCCE
Q 042574 547 GLKVLNLSHTNIEVLPS--SV-SNLTNLRSLLLRWCRRLK--RVP-SVAKLLALQYLDLERTWIEEVPEGM-EMLENLSH 619 (929)
Q Consensus 547 ~L~~L~l~~~~i~~lp~--~i-~~l~~L~~L~l~~~~~~~--~~~-~~~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~ 619 (929)
-+..|-+.++.|...-. .+ ...++++.|+|.+|.... .+. -+.+++.|++|+++.|.+...-..+ ..+++|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 34456666666553321 22 345677777877764322 122 2566777777777777554221111 24456777
Q ss_pred EEccCCCCcc-CCCCccCCCCCccEEEeecC
Q 042574 620 LYLSSPPLKK-FPTGILPRLRNLYKLKLSFG 649 (929)
Q Consensus 620 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~ 649 (929)
|-|.++.+.- -....+..++.+++|+++.|
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 7776665431 11223455666666666644
No 185
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.11 E-value=6.9e-05 Score=66.56 Aligned_cols=91 Identities=25% Similarity=0.366 Sum_probs=73.3
Q ss_pred CCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceeecccccccccCccccccCCCCEEE
Q 042574 519 HCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLRWCRRLKRVPSVAKLLALQYLD 598 (929)
Q Consensus 519 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~ 598 (929)
....|..+++++|. +.++|+.+...++.+..|++++|.++.+|..+..++.|+.|+++.|.......-+..|.+|-.|+
T Consensus 51 ~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 51 KGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred CCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 34567888999987 78888888778888999999999999999888899999999999875544433566688888888
Q ss_pred ccCCCCcccccc
Q 042574 599 LERTWIEEVPEG 610 (929)
Q Consensus 599 l~~~~i~~lp~~ 610 (929)
..++.+..+|-.
T Consensus 130 s~~na~~eid~d 141 (177)
T KOG4579|consen 130 SPENARAEIDVD 141 (177)
T ss_pred CCCCccccCcHH
Confidence 888877777765
No 186
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.10 E-value=0.01 Score=68.64 Aligned_cols=171 Identities=15% Similarity=0.180 Sum_probs=88.3
Q ss_pred ccccccch-HHHHHHHHHHhcC---------CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHH
Q 042574 139 ATLAGKKT-KKVVERIWEDLMG---------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLI 208 (929)
Q Consensus 139 ~~~vGr~~-~~~~~~l~~~l~~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 208 (929)
.+++|.+. .+.+.+++.++.. ...+-+.++|++|+|||++|+.+++... ..| +.++. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~---~~~-----~~i~~----~ 122 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAG---VPF-----FSISG----S 122 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC---CCe-----eeccH----H
Confidence 56778632 2234445554432 1245689999999999999999998751 122 22221 1
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC----C------------ccccccCCC--CCCC
Q 042574 209 KLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF----P------------LEEVGIPEP--SEEN 270 (929)
Q Consensus 209 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~----~------------~~~l~~~~~--~~~~ 270 (929)
++. ..... ........+........+.+|+|||++.-. . +..+...+. ....
T Consensus 123 ~~~----~~~~g------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 123 DFV----EMFVG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHH----HHHhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 111 11100 011223333333334567899999996421 0 001111111 1223
Q ss_pred CcEEEEEeCccc-ccccC----Ccce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCc
Q 042574 271 GCKLVITTRSLG-VSRSM----DCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGL 335 (929)
Q Consensus 271 gs~ilvTtR~~~-v~~~~----~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 335 (929)
+..||.||.... +...+ .-.. +.++..+.++-.++|+..+..... .. ......+++.+.|.
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~--~~--~~~l~~la~~t~G~ 259 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL--AP--DVDLKAVARRTPGF 259 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC--Cc--chhHHHHHHhCCCC
Confidence 445666665432 21111 1223 888889999999999877644321 11 11234677777764
No 187
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.08 E-value=0.00015 Score=74.87 Aligned_cols=179 Identities=17% Similarity=0.138 Sum_probs=108.8
Q ss_pred ccccEEEcccCCCCc--CC--CCCCCCCCcccEEEcccCCcCccCcHHH-------------HccCCCCcEEEecCCCCc
Q 042574 497 ENLERVSLMDNHIEE--IP--SNMSPHCKILSTLLLQRNGYLQRIPECF-------------FMHMRGLKVLNLSHTNIE 559 (929)
Q Consensus 497 ~~l~~L~l~~~~~~~--~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~~i~ 559 (929)
++++.+++++|-+.. ++ ..+..++..|+.|.+.+|. +....... .+.-+.||++...+|.+.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 367888888885431 11 1122357788888888886 33211111 134567888888888766
Q ss_pred ccC-----cccccccccceeeccccccccc-C---c-cccccCCCCEEEccCCCCc-----cccccccCCCCCCEEEccC
Q 042574 560 VLP-----SSVSNLTNLRSLLLRWCRRLKR-V---P-SVAKLLALQYLDLERTWIE-----EVPEGMEMLENLSHLYLSS 624 (929)
Q Consensus 560 ~lp-----~~i~~l~~L~~L~l~~~~~~~~-~---~-~~~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~ 624 (929)
.-+ ..+...+.|+.+.+..|..-.. + . .+..+++|+.|||..|.++ .+...+..+++|+.|+++.
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 443 2345567788888877653221 1 1 4777888888888888665 2334466677888888888
Q ss_pred CCCccCCCCc-----cCCCCCccEEEeecCCchhccc---HHHHhcccccccEeEEEeccc
Q 042574 625 PPLKKFPTGI-----LPRLRNLYKLKLSFGNEALRET---VEEAARLSDGLDSFEGHFSEL 677 (929)
Q Consensus 625 ~~~~~~~~~~-----l~~l~~L~~L~l~~~~~~~~~~---~~~l~~l~~~L~~L~~~~~~l 677 (929)
|.+..-.... -...++|+.|.+.+|....... ...+...+ .|..|.++.+.+
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~-dL~kLnLngN~l 310 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKP-DLEKLNLNGNRL 310 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcch-hhHHhcCCcccc
Confidence 8775432211 1346788888888765332221 23344444 777777766554
No 188
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.07 E-value=0.0078 Score=65.62 Aligned_cols=157 Identities=17% Similarity=0.202 Sum_probs=88.3
Q ss_pred ccccccchHHHHHHHHHHhcCC--CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGD--KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIAT 216 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 216 (929)
..++|..-.........+-..+ ....+.|||..|.|||.|++++.+.... ...-..+++++ .......++.
T Consensus 88 nFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~-~~~~a~v~y~~------se~f~~~~v~ 160 (408)
T COG0593 88 NFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALA-NGPNARVVYLT------SEDFTNDFVK 160 (408)
T ss_pred heeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHh-hCCCceEEecc------HHHHHHHHHH
Confidence 3445643222333333333332 3678999999999999999999998732 22222344443 2233333333
Q ss_pred HhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCc---CCc-cccccCCCC-CCCCcEEEEEeCcc---------c
Q 042574 217 ALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEA---FPL-EEVGIPEPS-EENGCKLVITTRSL---------G 282 (929)
Q Consensus 217 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~---~~~-~~l~~~~~~-~~~gs~ilvTtR~~---------~ 282 (929)
.+.. .....+.+.. .-=++++||++-- +.+ ++++..+.. ...|..||+|++.. .
T Consensus 161 a~~~---------~~~~~Fk~~y---~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~r 228 (408)
T COG0593 161 ALRD---------NEMEKFKEKY---SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDR 228 (408)
T ss_pred HHHh---------hhHHHHHHhh---ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHH
Confidence 3321 1122333333 2338899999642 122 222222211 13444899999752 3
Q ss_pred ccccCCcce-EecccCCHHHHHHHHHhhhcccC
Q 042574 283 VSRSMDCKE-IGVELLSQEEALNLFLDKVRIST 314 (929)
Q Consensus 283 v~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~ 314 (929)
+.+++...- +.+.+.+.+....++.+++....
T Consensus 229 L~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~ 261 (408)
T COG0593 229 LRSRLEWGLVVEIEPPDDETRLAILRKKAEDRG 261 (408)
T ss_pred HHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcC
Confidence 334455555 89999999999999998765543
No 189
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.07 E-value=0.0027 Score=71.86 Aligned_cols=137 Identities=14% Similarity=0.191 Sum_probs=72.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhc--CCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKET--NKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEML 239 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 239 (929)
.+-|.++|++|+|||++|+.+++...... ..+....|+.+... + ++.. + ..........+....
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~----e----Ll~k----y--vGete~~ir~iF~~A 281 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP----E----LLNK----Y--VGETERQIRLIFQRA 281 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch----h----hccc----c--cchHHHHHHHHHHHH
Confidence 56799999999999999999999873210 01122334443321 1 1110 0 011112222222222
Q ss_pred ----HhcCcEEEEEecCCCcC---------Cc-----cccccCCCC--CCCCcEEEEEeCcccccc-cC----Ccce-Ee
Q 042574 240 ----KAKAKFVLILDDMWEAF---------PL-----EEVGIPEPS--EENGCKLVITTRSLGVSR-SM----DCKE-IG 293 (929)
Q Consensus 240 ----~~~~~~LlvlDdv~~~~---------~~-----~~l~~~~~~--~~~gs~ilvTtR~~~v~~-~~----~~~~-~~ 293 (929)
..+++++|+||+++... +. ..+...+.. ...+..||.||...+... .+ .-.. +.
T Consensus 282 r~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~ 361 (512)
T TIGR03689 282 REKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIR 361 (512)
T ss_pred HHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEE
Confidence 23578999999997421 11 112111221 123445555665433211 11 1122 89
Q ss_pred cccCCHHHHHHHHHhhhcc
Q 042574 294 VELLSQEEALNLFLDKVRI 312 (929)
Q Consensus 294 l~~L~~~~~~~Lf~~~~~~ 312 (929)
++..+.++..++|+.++..
T Consensus 362 ~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 362 IERPDAEAAADIFSKYLTD 380 (512)
T ss_pred eCCCCHHHHHHHHHHHhhc
Confidence 9999999999999888643
No 190
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.03 E-value=0.00027 Score=72.96 Aligned_cols=133 Identities=21% Similarity=0.201 Sum_probs=93.1
Q ss_pred cccccEEEcccCCCCcCCC----CCCCCCCcccEEEcccCCcCcc---CcHHHHccCCCCcEEEecCCCCc-----ccCc
Q 042574 496 EENLERVSLMDNHIEEIPS----NMSPHCKILSTLLLQRNGYLQR---IPECFFMHMRGLKVLNLSHTNIE-----VLPS 563 (929)
Q Consensus 496 ~~~l~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~l~~L~~L~l~~~~i~-----~lp~ 563 (929)
.+++|.+...+|.+..-+. ..+..++.|..+.+..|..-.. +...-|..+++|++|||.+|.++ .+..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 3578999999998765442 2345678999999999873221 12223578999999999999876 3445
Q ss_pred ccccccccceeecccccccccCc-c-----ccccCCCCEEEccCCCCcc-----ccccccCCCCCCEEEccCCCCc
Q 042574 564 SVSNLTNLRSLLLRWCRRLKRVP-S-----VAKLLALQYLDLERTWIEE-----VPEGMEMLENLSHLYLSSPPLK 628 (929)
Q Consensus 564 ~i~~l~~L~~L~l~~~~~~~~~~-~-----~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~ 628 (929)
.++.+++|+.|++++|..-..-. . -...++|++|.+.+|.|+. +-..+...+.|..|++++|.+.
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 67788899999999984322211 1 2346889999999997762 2233556788888888888773
No 191
>PRK09183 transposase/IS protein; Provisional
Probab=97.02 E-value=0.011 Score=61.58 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...+.|+|++|+|||+||..+++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999998875
No 192
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.00 E-value=0.0054 Score=60.88 Aligned_cols=88 Identities=19% Similarity=0.248 Sum_probs=54.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECC-CCCHHHHHHHHHHHhcCCCC---CCccHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQTEIATALKQSLP---ENEDKVRRAGRLSE 237 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 237 (929)
++||.++|+.|+||||.+.+++...... -..+..++... .....+.++..++.++.+.. ...+.........+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 4789999999999999999998887432 44577777643 23456677888888887532 22233344433344
Q ss_pred HHHhcCcEEEEEecC
Q 042574 238 MLKAKAKFVLILDDM 252 (929)
Q Consensus 238 ~l~~~~~~LlvlDdv 252 (929)
....++.=++++|-.
T Consensus 78 ~~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 78 KFRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHHTTSSEEEEEE-
T ss_pred HHhhcCCCEEEEecC
Confidence 433333346666765
No 193
>PRK07261 topology modulation protein; Provisional
Probab=97.00 E-value=0.0012 Score=64.20 Aligned_cols=35 Identities=20% Similarity=0.456 Sum_probs=26.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEE
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIW 198 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 198 (929)
.|.|+|++|+||||||+++........-+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 58999999999999999998775322224455555
No 194
>PRK10536 hypothetical protein; Provisional
Probab=96.99 E-value=0.00088 Score=67.99 Aligned_cols=54 Identities=15% Similarity=0.131 Sum_probs=37.1
Q ss_pred cccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEE
Q 042574 140 TLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIW 198 (929)
Q Consensus 140 ~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~w 198 (929)
.+.++ ......++.++.+. .+|.+.|++|+|||+||.++..+.-. .+.|+.++-
T Consensus 56 ~i~p~--n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~-~~~~~kIiI 109 (262)
T PRK10536 56 PILAR--NEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALI-HKDVDRIIV 109 (262)
T ss_pred cccCC--CHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHh-cCCeeEEEE
Confidence 34555 45556677777654 49999999999999999999886421 234554433
No 195
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.97 E-value=0.0073 Score=65.61 Aligned_cols=159 Identities=13% Similarity=0.102 Sum_probs=80.9
Q ss_pred cccc-cchHHHHHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 140 TLAG-KKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 140 ~~vG-r~~~~~~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
.++| . +..++.+...+..++ .+...++|+.|+||||+|+.+.+..... ...... .++. -...+.+...
T Consensus 6 ~i~~~q--~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~-~~~~~~---~cg~----C~~c~~~~~~ 75 (329)
T PRK08058 6 QLTALQ--PVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCL-ERNGVE---PCGT----CTNCKRIDSG 75 (329)
T ss_pred HHHhhH--HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCC-CCCCCC---CCCc----CHHHHHHhcC
Confidence 3556 4 556777888887776 5677999999999999999998876211 100000 0000 0000000000
Q ss_pred hcCC-----CCCCccHHHHHHHHHHHHH----hcCcEEEEEecCCCcCC--ccccccCCCCCCCCcEEEEEeCcc-cccc
Q 042574 218 LKQS-----LPENEDKVRRAGRLSEMLK----AKAKFVLILDDMWEAFP--LEEVGIPEPSEENGCKLVITTRSL-GVSR 285 (929)
Q Consensus 218 l~~~-----~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~ilvTtR~~-~v~~ 285 (929)
-..+ ........+.+..+.+.+. .+++-++|+|++..... ...+...+..-..++.+|++|.+. .+..
T Consensus 76 ~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~ 155 (329)
T PRK08058 76 NHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILP 155 (329)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcH
Confidence 0000 0000011122222332221 24566789999865322 222322222223466677666553 3333
Q ss_pred cCC--cceEecccCCHHHHHHHHHh
Q 042574 286 SMD--CKEIGVELLSQEEALNLFLD 308 (929)
Q Consensus 286 ~~~--~~~~~l~~L~~~~~~~Lf~~ 308 (929)
... +..+++.+++.++..+.+.+
T Consensus 156 TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 156 TILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHhhceeeeCCCCCHHHHHHHHHH
Confidence 222 22389999999999888864
No 196
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.95 E-value=0.019 Score=61.36 Aligned_cols=181 Identities=13% Similarity=0.150 Sum_probs=96.2
Q ss_pred HHHHHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcE-----EEEEEECCCCCHHHHHHHHHHHhcC
Q 042574 147 KKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNV-----VIWVTVSQPLDLIKLQTEIATALKQ 220 (929)
Q Consensus 147 ~~~~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-----~~wv~~s~~~~~~~~~~~i~~~l~~ 220 (929)
+...+.+...+..++ ...+.++|+.|+||+++|..++...--.. ...+ .-|+..+..+|+.-+. ...
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~-~~~~~~c~~c~~~~~g~HPD~~~i~------~~p 82 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG-PDPAAAQRTRQLIAAGTHPDLQLVS------FIP 82 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC-CCCCCcchHHHHHhcCCCCCEEEEe------cCC
Confidence 445677777777776 45799999999999999999988763211 0100 0011111111110000 000
Q ss_pred CCCC----CccHHHHHHHHHHHHH----hcCcEEEEEecCCCcCC--ccccccCCCCCCCCcEEEEEeCc-ccccccCC-
Q 042574 221 SLPE----NEDKVRRAGRLSEMLK----AKAKFVLILDDMWEAFP--LEEVGIPEPSEENGCKLVITTRS-LGVSRSMD- 288 (929)
Q Consensus 221 ~~~~----~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~ilvTtR~-~~v~~~~~- 288 (929)
.... ..-..+.++.+.+.+. .+++-++|+|+++.... -..+..-+..-..++.+|++|.+ ..+.....
T Consensus 83 ~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrS 162 (319)
T PRK08769 83 NRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRS 162 (319)
T ss_pred CcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHh
Confidence 0000 0011223333443332 24567899999976422 11121111111345666666654 44443222
Q ss_pred -cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHH
Q 042574 289 -CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVA 343 (929)
Q Consensus 289 -~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 343 (929)
+..+.+.+++.+++.+.+.+. +. . ++.+..++..++|.|+.+..+.
T Consensus 163 RCq~i~~~~~~~~~~~~~L~~~-~~-----~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 163 RCQRLEFKLPPAHEALAWLLAQ-GV-----S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred hheEeeCCCcCHHHHHHHHHHc-CC-----C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 333899999999999888653 11 1 2336678999999998765443
No 197
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.88 E-value=0.005 Score=62.40 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=36.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQT 212 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 212 (929)
.+++.|+|++|+|||++|.+++.... .....++|++... ++...+.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~---~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAA---RQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---hCCCeEEEEECCC-CCHHHHHH
Confidence 57999999999999999999988763 2346789999875 66555443
No 198
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0031 Score=68.76 Aligned_cols=93 Identities=22% Similarity=0.248 Sum_probs=62.3
Q ss_pred cccccch-HHHHHHHHHHhcCCC---------eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHH
Q 042574 140 TLAGKKT-KKVVERIWEDLMGDK---------VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIK 209 (929)
Q Consensus 140 ~~vGr~~-~~~~~~l~~~l~~~~---------~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 209 (929)
++-|-+. ..++++|+++|.++. ++-|.++|++|.|||-||++++.+. .+ .+| ...+..|+.
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA-~V-PFF-----~~sGSEFdE-- 375 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA-GV-PFF-----YASGSEFDE-- 375 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc-CC-CeE-----eccccchhh--
Confidence 4445432 567889999998742 6789999999999999999999876 22 222 223333331
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCC
Q 042574 210 LQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWE 254 (929)
Q Consensus 210 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~ 254 (929)
+.- .-...+++.+...-++.-+++|++|.++.
T Consensus 376 ----m~V---------GvGArRVRdLF~aAk~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 376 ----MFV---------GVGARRVRDLFAAAKARAPCIIFIDEIDA 407 (752)
T ss_pred ----hhh---------cccHHHHHHHHHHHHhcCCeEEEEechhh
Confidence 111 12244566666666667799999999864
No 199
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.84 E-value=0.0033 Score=61.19 Aligned_cols=68 Identities=19% Similarity=0.199 Sum_probs=48.3
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIK 209 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 209 (929)
.++||- +..++++.-...+++.+-+.|.||+|+||||-+..+++.+-.. ..-+.+.=..+|+.-.++-
T Consensus 27 ~dIVGN--e~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~-~~ke~vLELNASdeRGIDv 94 (333)
T KOG0991|consen 27 QDIVGN--EDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGD-SYKEAVLELNASDERGIDV 94 (333)
T ss_pred HHhhCC--HHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhCh-hhhhHhhhccCccccccHH
Confidence 688996 6677777777788889999999999999999999888887321 1223344444555444433
No 200
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.012 Score=61.61 Aligned_cols=160 Identities=18% Similarity=0.210 Sum_probs=90.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLK 240 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 240 (929)
.++-|.++|++|.|||-||++|+++. ...| +.|.. .++.+..- .+.......+.+.-+
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T---~AtF-----Irvvg--------SElVqKYi------GEGaRlVRelF~lAr 241 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQT---DATF-----IRVVG--------SELVQKYI------GEGARLVRELFELAR 241 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhcc---CceE-----EEecc--------HHHHHHHh------ccchHHHHHHHHHHh
Confidence 36889999999999999999999975 2333 22221 12222211 123344555555555
Q ss_pred hcCcEEEEEecCCCc----C------C------ccccccCCCC--CCCCcEEEEEeCcccccc--cCCc---ce-Eeccc
Q 042574 241 AKAKFVLILDDMWEA----F------P------LEEVGIPEPS--EENGCKLVITTRSLGVSR--SMDC---KE-IGVEL 296 (929)
Q Consensus 241 ~~~~~LlvlDdv~~~----~------~------~~~l~~~~~~--~~~gs~ilvTtR~~~v~~--~~~~---~~-~~l~~ 296 (929)
.+.+.+|++|.++.- . + +-++...+.. ....-|||..|...++.. .+.. .. ++++.
T Consensus 242 ekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfpl 321 (406)
T COG1222 242 EKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPL 321 (406)
T ss_pred hcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCC
Confidence 678999999998631 0 0 1112222221 234668888877655432 1111 12 77876
Q ss_pred CCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCcc----HHHHHHHhhh
Q 042574 297 LSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLP----LAIVTVASCM 346 (929)
Q Consensus 297 L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P----lai~~~~~~L 346 (929)
-+.+.-.++|+-+...-.....-+++. +++.|.|.- .|+.+=|+++
T Consensus 322 Pd~~gR~~Il~IHtrkM~l~~dvd~e~----la~~~~g~sGAdlkaictEAGm~ 371 (406)
T COG1222 322 PDEEGRAEILKIHTRKMNLADDVDLEL----LARLTEGFSGADLKAICTEAGMF 371 (406)
T ss_pred CCHHHHHHHHHHHhhhccCccCcCHHH----HHHhcCCCchHHHHHHHHHHhHH
Confidence 666666778877765443323334444 556666654 3455555554
No 201
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.82 E-value=0.001 Score=60.70 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+|+|.|++|+||||+|+++++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999976
No 202
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.76 E-value=0.0015 Score=63.12 Aligned_cols=149 Identities=17% Similarity=0.209 Sum_probs=77.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhc-
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAK- 242 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~- 242 (929)
++.|.|.+|+|||++|.++.... ...++++.-.+.++.+ +.+.|....... +......+....+.+.+...
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~------~~~~~y~at~~~~d~e-m~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~~ 72 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL------GGPVTYIATAEAFDDE-MAERIARHRKRR-PAHWRTIETPRDLVSALKELD 72 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc------CCCeEEEEccCcCCHH-HHHHHHHHHHhC-CCCceEeecHHHHHHHHHhcC
Confidence 36899999999999999987641 2356777766666553 444443322211 11111112222333333221
Q ss_pred CcEEEEEecCCC--cCCc--------c---c----cccCCCCCCCCcEEEEEeCcccccccCCcceEecccCCHHHHHHH
Q 042574 243 AKFVLILDDMWE--AFPL--------E---E----VGIPEPSEENGCKLVITTRSLGVSRSMDCKEIGVELLSQEEALNL 305 (929)
Q Consensus 243 ~~~LlvlDdv~~--~~~~--------~---~----l~~~~~~~~~gs~ilvTtR~~~v~~~~~~~~~~l~~L~~~~~~~L 305 (929)
+.-.+++|.+.. .... + . +...+. ..+..+|+||.. +-.+....+..-+.
T Consensus 73 ~~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~viVsnE-----------vG~g~vp~~~~~r~ 139 (169)
T cd00544 73 PGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVR--NKPGTLILVSNE-----------VGLGVVPENALGRR 139 (169)
T ss_pred CCCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHH--cCCCcEEEEECC-----------cCCCCCCCCHHHHH
Confidence 344799999731 1110 1 1 111122 345566777642 23344556667777
Q ss_pred HHhhhcccCCCCCcchHHHHHHHHHhcCCccH
Q 042574 306 FLDKVRISTSQIPNLDKEIINSVVEECDGLPL 337 (929)
Q Consensus 306 f~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 337 (929)
|...+|.- ...+...+.++.....|+|+
T Consensus 140 f~d~lG~l----nq~la~~ad~v~~vv~Gip~ 167 (169)
T cd00544 140 FRDELGRL----NQRLAALADEVYLVVSGIPL 167 (169)
T ss_pred HHHHHHHH----HHHHHHHCCEEEEEECCcce
Confidence 87766552 22334444444444567764
No 203
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.72 E-value=0.037 Score=58.10 Aligned_cols=56 Identities=23% Similarity=0.311 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHH
Q 042574 147 KKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKL 210 (929)
Q Consensus 147 ~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 210 (929)
.+..+++..++..+. -|.+.|++|+|||++|+.++... .. ..+.+++....+..++
T Consensus 8 ~~l~~~~l~~l~~g~--~vLL~G~~GtGKT~lA~~la~~l---g~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 8 KRVTSRALRYLKSGY--PVHLRGPAGTGKTTLAMHVARKR---DR---PVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHHHhcCC--eEEEEcCCCCCHHHHHHHHHHHh---CC---CEEEEeCCccCCHHHH
Confidence 345566777666543 46689999999999999998754 11 2355666555554444
No 204
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.72 E-value=0.064 Score=60.41 Aligned_cols=87 Identities=20% Similarity=0.180 Sum_probs=46.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECC-CCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLK 240 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 240 (929)
..+|+|+|++|+||||++.+++..+.. .+....+..++... ...-.+.+......++.......+... .....+.+
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~-~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~-L~~aL~~l- 426 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAA-QHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAES-LLDLLERL- 426 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH-hcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHH-HHHHHHHh-
Confidence 479999999999999999999887632 22233455555422 111222333333334433322222222 22333333
Q ss_pred hcCcEEEEEecC
Q 042574 241 AKAKFVLILDDM 252 (929)
Q Consensus 241 ~~~~~LlvlDdv 252 (929)
...=+||+|..
T Consensus 427 -~~~DLVLIDTa 437 (559)
T PRK12727 427 -RDYKLVLIDTA 437 (559)
T ss_pred -ccCCEEEecCC
Confidence 23557788876
No 205
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.021 Score=63.64 Aligned_cols=71 Identities=23% Similarity=0.406 Sum_probs=47.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKA 241 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (929)
.+-|.++|++|.|||.||++++++.. + .| +.++.. +|...+. ...++.++.+...-.+
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel~-v--Pf-----~~isAp--------eivSGvS------GESEkkiRelF~~A~~ 280 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLANAIAGELG-V--PF-----LSISAP--------EIVSGVS------GESEKKIRELFDQAKS 280 (802)
T ss_pred CCceeeeCCCCccHHHHHHHHhhhcC-C--ce-----Eeecch--------hhhcccC------cccHHHHHHHHHHHhc
Confidence 57899999999999999999999872 2 12 222221 2222221 2234455666665556
Q ss_pred cCcEEEEEecCCC
Q 042574 242 KAKFVLILDDMWE 254 (929)
Q Consensus 242 ~~~~LlvlDdv~~ 254 (929)
.-++++++|+++.
T Consensus 281 ~aPcivFiDeIDA 293 (802)
T KOG0733|consen 281 NAPCIVFIDEIDA 293 (802)
T ss_pred cCCeEEEeecccc
Confidence 6799999999964
No 206
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.017 Score=67.21 Aligned_cols=177 Identities=16% Similarity=0.164 Sum_probs=104.6
Q ss_pred ccccccch-HHHHHHHHHHhcCCC---------eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHH
Q 042574 139 ATLAGKKT-KKVVERIWEDLMGDK---------VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLI 208 (929)
Q Consensus 139 ~~~vGr~~-~~~~~~l~~~l~~~~---------~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 208 (929)
.++.|-+. ..++.+++.+|.+++ ++-|.++|++|+|||-||++++... .+ . |++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-gV-P------F~svSGS---- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-GV-P------FFSVSGS---- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-CC-c------eeeechH----
Confidence 55666532 456778888887743 6789999999999999999999976 22 1 2333321
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC-----------------ccccccCCCCCC--
Q 042574 209 KLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP-----------------LEEVGIPEPSEE-- 269 (929)
Q Consensus 209 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-----------------~~~l~~~~~~~~-- 269 (929)
+..+.+.. -...++..+...-+...+.++.+|+++...- +..+....+...
T Consensus 379 ----EFvE~~~g------~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 379 ----EFVEMFVG------VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred ----HHHHHhcc------cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 22222221 1133455565555566799999999864211 112222222222
Q ss_pred CCcEEEEEeCcccccc--cC--Ccc-e-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHH
Q 042574 270 NGCKLVITTRSLGVSR--SM--DCK-E-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIV 340 (929)
Q Consensus 270 ~gs~ilvTtR~~~v~~--~~--~~~-~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 340 (929)
.+--++-+|+..++.. .+ |-. . +.++.-+.....++|+-++..... ..+..++++ |+...-|.+-|..
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~--~~e~~dl~~-~a~~t~gf~gadl 522 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL--DDEDVDLSK-LASLTPGFSGADL 522 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC--CcchhhHHH-HHhcCCCCcHHHH
Confidence 2233334555544432 11 111 1 777777888888999888765433 244556666 8888888886553
No 207
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.66 E-value=0.069 Score=65.67 Aligned_cols=46 Identities=22% Similarity=0.381 Sum_probs=33.2
Q ss_pred ccccccchHHHHHHHHHHhc-------CCC--eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLM-------GDK--VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~-------~~~--~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..++|. +..++.+...+. +++ ..++.++|+.|+|||++|+.+++..
T Consensus 568 ~~viGQ--~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQ--NEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCC--HHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 567887 455555555543 122 3578999999999999999998865
No 208
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.032 Score=65.60 Aligned_cols=104 Identities=17% Similarity=0.346 Sum_probs=58.5
Q ss_pred ccccccchHHHHHHHHHHhc-------CC--CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLM-------GD--KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIK 209 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~-------~~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 209 (929)
..++|+ +..+..+.+.+. ++ ...+..++|+.|||||.||++++..+ ++.=+..+-++.|+-..
T Consensus 491 ~rViGQ--d~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~E--- 562 (786)
T COG0542 491 KRVIGQ--DEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYME--- 562 (786)
T ss_pred cceeCh--HHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHH---
Confidence 457887 566666666653 22 25688889999999999999999977 22223333333332111
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcE-EEEEecCCC
Q 042574 210 LQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKF-VLILDDMWE 254 (929)
Q Consensus 210 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~-LlvlDdv~~ 254 (929)
-..+.+-+|.+..-... +....+-+..+ .++| ++.||+|..
T Consensus 563 -kHsVSrLIGaPPGYVGy--eeGG~LTEaVR-r~PySViLlDEIEK 604 (786)
T COG0542 563 -KHSVSRLIGAPPGYVGY--EEGGQLTEAVR-RKPYSVILLDEIEK 604 (786)
T ss_pred -HHHHHHHhCCCCCCcee--ccccchhHhhh-cCCCeEEEechhhh
Confidence 12233334443221111 11223444444 3455 888899975
No 209
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.028 Score=63.89 Aligned_cols=63 Identities=27% Similarity=0.300 Sum_probs=44.2
Q ss_pred cccccchHHHHHHHHHHhcC------CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHH
Q 042574 140 TLAGKKTKKVVERIWEDLMG------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKL 210 (929)
Q Consensus 140 ~~vGr~~~~~~~~l~~~l~~------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 210 (929)
+=+|- +..+++|++++.- -..+++.++|++|+|||++|+.++.-+.+ .+ +-++++.-.|..++
T Consensus 412 DHYgm--~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnR--kF----fRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 412 DHYGM--EDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNR--KF----FRFSVGGMTDVAEI 480 (906)
T ss_pred cccch--HHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCC--ce----EEEeccccccHHhh
Confidence 34554 6678889888742 24689999999999999999999998842 22 23455555554443
No 210
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.60 E-value=0.067 Score=57.33 Aligned_cols=175 Identities=10% Similarity=0.087 Sum_probs=93.9
Q ss_pred HHHHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHHhhhcC-----CCcE--EEEEEECCCCCHHHHHHHHHHHhc
Q 042574 148 KVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETN-----KFNV--VIWVTVSQPLDLIKLQTEIATALK 219 (929)
Q Consensus 148 ~~~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----~f~~--~~wv~~s~~~~~~~~~~~i~~~l~ 219 (929)
...+.+...+..+. .....+.|+.|+||+++|+.++...--... +..| .-++..+..+|+..+.
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~-------- 80 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILE-------- 80 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEc--------
Confidence 34556777777766 478899999999999999999887632110 0000 0000111111111000
Q ss_pred CCCCCCccHHHHHHHHHHHHH----hcCcEEEEEecCCCcCC--ccccccCCCCCCCCcEEEEEeCc-ccccccCC--cc
Q 042574 220 QSLPENEDKVRRAGRLSEMLK----AKAKFVLILDDMWEAFP--LEEVGIPEPSEENGCKLVITTRS-LGVSRSMD--CK 290 (929)
Q Consensus 220 ~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~ilvTtR~-~~v~~~~~--~~ 290 (929)
. .....-..+.++.+.+.+. .+++-++|+|+++.... ...+..-+..-..++.+|++|.+ ..+..... +.
T Consensus 81 p-~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 81 P-IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred c-ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhce
Confidence 0 0000112233333433332 35567888999986432 22222112111345566666654 34443322 33
Q ss_pred eEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHH
Q 042574 291 EIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAI 339 (929)
Q Consensus 291 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 339 (929)
.+.+.+++++++.+.+.+..... ...+...+..++|.|+.+
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 49999999999998887653211 123556788999999644
No 211
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.59 E-value=0.0055 Score=64.04 Aligned_cols=51 Identities=18% Similarity=0.258 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEE
Q 042574 147 KKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVI 197 (929)
Q Consensus 147 ~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~ 197 (929)
..+-.-.+++|.++++..|.+.|.+|+|||.||.+..-...-.+..|..++
T Consensus 230 n~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Kii 280 (436)
T COG1875 230 NAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKII 280 (436)
T ss_pred cHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEE
Confidence 334455678889999999999999999999998876554433344555433
No 212
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.55 E-value=0.013 Score=56.52 Aligned_cols=40 Identities=28% Similarity=0.435 Sum_probs=31.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCC
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 206 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 206 (929)
++.|+|++|+||||+|..+...... .-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCcchH
Confidence 4789999999999999999988732 345678887765543
No 213
>PRK12377 putative replication protein; Provisional
Probab=96.53 E-value=0.0042 Score=63.85 Aligned_cols=73 Identities=26% Similarity=0.321 Sum_probs=45.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKA 241 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (929)
...+.|+|.+|+|||+||.++++... . ....++++++. ++...|-..... .... ..+.+.+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~-~--~g~~v~~i~~~------~l~~~l~~~~~~----~~~~----~~~l~~l-- 161 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL-A--KGRSVIVVTVP------DVMSRLHESYDN----GQSG----EKFLQEL-- 161 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH-H--cCCCeEEEEHH------HHHHHHHHHHhc----cchH----HHHHHHh--
Confidence 46799999999999999999999984 2 22335666543 344444333221 1111 1234444
Q ss_pred cCcEEEEEecCC
Q 042574 242 KAKFVLILDDMW 253 (929)
Q Consensus 242 ~~~~LlvlDdv~ 253 (929)
.+-=||||||+-
T Consensus 162 ~~~dLLiIDDlg 173 (248)
T PRK12377 162 CKVDLLVLDEIG 173 (248)
T ss_pred cCCCEEEEcCCC
Confidence 357799999994
No 214
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.52 E-value=0.0068 Score=68.88 Aligned_cols=74 Identities=19% Similarity=0.259 Sum_probs=54.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKA 241 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (929)
-+|+.++|++|+||||||..++++. .| .++=+.+|+.-+...+-..|...+....-.. ..
T Consensus 326 kKilLL~GppGlGKTTLAHViAkqa-----GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~--------------ad 385 (877)
T KOG1969|consen 326 KKILLLCGPPGLGKTTLAHVIAKQA-----GY-SVVEINASDERTAPMVKEKIENAVQNHSVLD--------------AD 385 (877)
T ss_pred cceEEeecCCCCChhHHHHHHHHhc-----Cc-eEEEecccccccHHHHHHHHHHHHhhccccc--------------cC
Confidence 5799999999999999999998864 23 4788889988887777777766554321100 12
Q ss_pred cCcEEEEEecCCCc
Q 042574 242 KAKFVLILDDMWEA 255 (929)
Q Consensus 242 ~~~~LlvlDdv~~~ 255 (929)
+++.-||+|.++..
T Consensus 386 srP~CLViDEIDGa 399 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGA 399 (877)
T ss_pred CCcceEEEecccCC
Confidence 57889999999754
No 215
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.51 E-value=0.014 Score=66.34 Aligned_cols=151 Identities=17% Similarity=0.182 Sum_probs=78.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKA 241 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (929)
.+-|.++|++|+|||.+|+.+++... -.| +-+..+. +. ... ..........+.+....
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~---~~~---~~l~~~~------l~--------~~~--vGese~~l~~~f~~A~~ 316 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQ---LPL---LRLDVGK------LF--------GGI--VGESESRMRQMIRIAEA 316 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhC---CCE---EEEEhHH------hc--------ccc--cChHHHHHHHHHHHHHh
Confidence 56799999999999999999999862 122 2222211 11 011 01122233344443344
Q ss_pred cCcEEEEEecCCCcCC----c----------cccccCCCCCCCCcEEEEEeCccc-ccccC----Ccce-EecccCCHHH
Q 042574 242 KAKFVLILDDMWEAFP----L----------EEVGIPEPSEENGCKLVITTRSLG-VSRSM----DCKE-IGVELLSQEE 301 (929)
Q Consensus 242 ~~~~LlvlDdv~~~~~----~----------~~l~~~~~~~~~gs~ilvTtR~~~-v~~~~----~~~~-~~l~~L~~~~ 301 (929)
..+++|++|+++.... . ..+...+.....+--||.||.+.. +...+ .-.. +.++.-+.++
T Consensus 317 ~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~e 396 (489)
T CHL00195 317 LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEE 396 (489)
T ss_pred cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHH
Confidence 5799999999974210 0 001111111223334555665432 21111 2223 7788888999
Q ss_pred HHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCcc
Q 042574 302 ALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLP 336 (929)
Q Consensus 302 ~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 336 (929)
-.++|+.+.......... ......+++.+.|.-
T Consensus 397 R~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 397 REKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCC
Confidence 999998776543210000 112345666666654
No 216
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.51 E-value=0.0051 Score=56.74 Aligned_cols=121 Identities=20% Similarity=0.331 Sum_probs=49.0
Q ss_pred CCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCc-ccccccccceeecccccccccCc--ccc
Q 042574 513 PSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPS-SVSNLTNLRSLLLRWCRRLKRVP--SVA 589 (929)
Q Consensus 513 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~~~--~~~ 589 (929)
+...|.++++|+.+.+..+ +..++...|.++..|+.+.+.++ +..++. .+.++.+|+.+.+.. .+..++ .+.
T Consensus 4 ~~~~F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~ 78 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFS 78 (129)
T ss_dssp -TTTTTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTT
T ss_pred CHHHHhCCCCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--ccccccccccc
Confidence 3445556666666666532 45555555666666666666653 454443 244555566666643 223333 345
Q ss_pred ccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCccCCCCccCCCCCc
Q 042574 590 KLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNL 641 (929)
Q Consensus 590 ~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 641 (929)
.+.+|+.+++..+ +..++.. +.+. +|+.+.+.. .+..++...+.++++|
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp T-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 5666666666543 4444443 4444 666666654 4555555556555554
No 217
>PRK06526 transposase; Provisional
Probab=96.48 E-value=0.0018 Score=67.06 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
..-+.|+|++|+|||+||..+.+...
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHH
Confidence 45689999999999999999998863
No 218
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.47 E-value=0.035 Score=62.05 Aligned_cols=87 Identities=23% Similarity=0.230 Sum_probs=51.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECC-CCCHHHHHHHHHHHhcCCCCCC---ccHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQTEIATALKQSLPEN---EDKVRRAGRLS 236 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~ 236 (929)
.+.+|.++|.+|+||||.|.+++..+. .. .+ .+..|++.. .+...+.++.++.+++.+.... .+....+....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~-~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al 170 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK-KK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGL 170 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-Hc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 467999999999999999999998874 22 23 344454432 1223455666777766543221 22222233333
Q ss_pred HHHHhcCcEEEEEecC
Q 042574 237 EMLKAKAKFVLILDDM 252 (929)
Q Consensus 237 ~~l~~~~~~LlvlDdv 252 (929)
+... + .-++|+|..
T Consensus 171 ~~~~-~-~DvVIIDTA 184 (437)
T PRK00771 171 EKFK-K-ADVIIVDTA 184 (437)
T ss_pred HHhh-c-CCEEEEECC
Confidence 3332 2 356788886
No 219
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.46 E-value=0.075 Score=58.90 Aligned_cols=38 Identities=29% Similarity=0.286 Sum_probs=28.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEE
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 201 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 201 (929)
...+|.++|+.|+||||+|.+++..+. .. .+ .+..|+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~-~~-G~-kV~lV~~ 136 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQ-RK-GF-KPCLVCA 136 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HC-CC-CEEEEcC
Confidence 368999999999999999999998773 22 23 3555544
No 220
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.46 E-value=0.05 Score=62.01 Aligned_cols=165 Identities=16% Similarity=0.119 Sum_probs=96.3
Q ss_pred cccccchHHHHHHHHHHhc----C-CCeeEEEEEcCCCChHHHHHHHHHHHHhhh-----cCCCcEEEEEEECCCCCHHH
Q 042574 140 TLAGKKTKKVVERIWEDLM----G-DKVTKIGVWGMGGIGKTTIMKEINNRLQKE-----TNKFNVVIWVTVSQPLDLIK 209 (929)
Q Consensus 140 ~~vGr~~~~~~~~l~~~l~----~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-----~~~f~~~~wv~~s~~~~~~~ 209 (929)
.+-+| +.+..+|-.++. . +..+.+-|.|.+|+|||..+..|.+.+... -..|+ .+.|..-.-....+
T Consensus 397 sLpcR--e~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 397 SLPCR--ENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred cccch--hHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 45566 455556655553 3 335699999999999999999999976421 12343 23444444456889
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHHH----hcCcEEEEEecCCCc-----CCccccccCCCCCCCCcEEEEEeCc
Q 042574 210 LQTEIATALKQSLPENEDKVRRAGRLSEMLK----AKAKFVLILDDMWEA-----FPLEEVGIPEPSEENGCKLVITTRS 280 (929)
Q Consensus 210 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~-----~~~~~l~~~~~~~~~gs~ilvTtR~ 280 (929)
+...|..++..... ........+..++. +.+.+++++|+++.. +.+-.++. . ...++||++|.+=.
T Consensus 474 ~Y~~I~~~lsg~~~---~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fd-W-pt~~~sKLvvi~Ia 548 (767)
T KOG1514|consen 474 IYEKIWEALSGERV---TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFD-W-PTLKNSKLVVIAIA 548 (767)
T ss_pred HHHHHHHhcccCcc---cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhc-C-CcCCCCceEEEEec
Confidence 99999998876422 11222233333333 346788999998542 11212211 1 13457777664421
Q ss_pred -----------ccccccCCcceEecccCCHHHHHHHHHhhhcc
Q 042574 281 -----------LGVSRSMDCKEIGVELLSQEEALNLFLDKVRI 312 (929)
Q Consensus 281 -----------~~v~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 312 (929)
..++..+|-..+..++.+.++-.++...+...
T Consensus 549 NTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~ 591 (767)
T KOG1514|consen 549 NTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKG 591 (767)
T ss_pred ccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcc
Confidence 12333444444777777777777777655433
No 221
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.45 E-value=0.016 Score=59.52 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=36.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhc---CCCcEEEEEEECCCCCHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLDLIKLQ 211 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~ 211 (929)
..++.|+|.+|+|||+||.+++....... +.=..++|++....++...+.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 57999999999999999999877642110 001457899887777765543
No 222
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.44 E-value=0.13 Score=56.04 Aligned_cols=195 Identities=15% Similarity=0.155 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHH-HHHHHHHhhhcCCCcEEEEEEECCC---CCHHHHHHHHHHHhcC--
Q 042574 147 KKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIM-KEINNRLQKETNKFNVVIWVTVSQP---LDLIKLQTEIATALKQ-- 220 (929)
Q Consensus 147 ~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~~wv~~s~~---~~~~~~~~~i~~~l~~-- 220 (929)
.+.+++|-.||.+..-..|.|.||-|+||+.|+ .++.++. ..+..+++.+- .+-..+...++.++|-
T Consensus 2 ~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 2 KEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred chHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 356788999998877789999999999999999 6665542 12666665432 1223333444444331
Q ss_pred ----------------------CCCCCccHHHHHHHHHH----HHH-------------------------hcCcEEEEE
Q 042574 221 ----------------------SLPENEDKVRRAGRLSE----MLK-------------------------AKAKFVLIL 249 (929)
Q Consensus 221 ----------------------~~~~~~~~~~~~~~l~~----~l~-------------------------~~~~~Llvl 249 (929)
...-....+.+...+.. .++ ..++=++|+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 10001122222221111 000 012568999
Q ss_pred ecCCCcCC-----------ccccccCCCCCCCCcEEEEEeCccccc----ccCCcce---EecccCCHHHHHHHHHhhhc
Q 042574 250 DDMWEAFP-----------LEEVGIPEPSEENGCKLVITTRSLGVS----RSMDCKE---IGVELLSQEEALNLFLDKVR 311 (929)
Q Consensus 250 Ddv~~~~~-----------~~~l~~~~~~~~~gs~ilvTtR~~~v~----~~~~~~~---~~l~~L~~~~~~~Lf~~~~~ 311 (929)
|+.-.... |... +. ..+-.+||++|-+.... ..+.... +.|...+++.|.++...+..
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~---Lv-~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAAS---LV-QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred cchhccCcccchHHHHHHHHHHH---HH-hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 99854321 2221 11 23456899988875443 3443333 89999999999999998875
Q ss_pred ccCCC-------------CC----cchHHHHHHHHHhcCCccHHHHHHHhhhcCCCCh
Q 042574 312 ISTSQ-------------IP----NLDKEIINSVVEECDGLPLAIVTVASCMRGVDEI 352 (929)
Q Consensus 312 ~~~~~-------------~~----~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~ 352 (929)
..... .. .....-....+...||==.-+..+++.++...++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 43110 00 1233445668888999999999999998876554
No 223
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.44 E-value=0.014 Score=56.25 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 147 KKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 147 ~~~~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
++..+.+.+.+..++ ...+.++|+.|+||+|+|..++...
T Consensus 3 ~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 3 EEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 556777777887777 4588999999999999999998876
No 224
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.43 E-value=0.014 Score=59.85 Aligned_cols=45 Identities=24% Similarity=0.299 Sum_probs=35.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKL 210 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 210 (929)
..++.|+|.+|+|||++|.+++..... ....++|++.. .++...+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~---~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAK---NGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEECC-CCCHHHH
Confidence 579999999999999999999887632 24568899887 5555444
No 225
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.42 E-value=0.28 Score=52.43 Aligned_cols=99 Identities=19% Similarity=0.224 Sum_probs=57.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLK 240 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 240 (929)
..+-+.|+|..|+|||.||.++++... . ..+ .+.++++. +++..+....... .. ....+.+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~-~-~g~-~v~~~~~~------~l~~~lk~~~~~~-----~~----~~~l~~l- 215 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELA-K-KGV-SSTLLHFP------EFIRELKNSISDG-----SV----KEKIDAV- 215 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-H-cCC-CEEEEEHH------HHHHHHHHHHhcC-----cH----HHHHHHh-
Confidence 356799999999999999999999984 2 223 35566543 4555554444211 11 1233333
Q ss_pred hcCcEEEEEecCCC--cCCcc--ccccCC-CCC-CCCcEEEEEeC
Q 042574 241 AKAKFVLILDDMWE--AFPLE--EVGIPE-PSE-ENGCKLVITTR 279 (929)
Q Consensus 241 ~~~~~LlvlDdv~~--~~~~~--~l~~~~-~~~-~~gs~ilvTtR 279 (929)
.+-=||||||+-. ...|. .+...+ ... ..+-.+|+||-
T Consensus 216 -~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 216 -KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred -cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 3566899999953 23343 232222 111 23456777775
No 226
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.40 E-value=0.077 Score=57.50 Aligned_cols=177 Identities=12% Similarity=0.100 Sum_probs=95.0
Q ss_pred HHHHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHHhhhcC-----CCcE--EEEEEECCCCCHHHHHHHHHHHhc
Q 042574 148 KVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETN-----KFNV--VIWVTVSQPLDLIKLQTEIATALK 219 (929)
Q Consensus 148 ~~~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----~f~~--~~wv~~s~~~~~~~~~~~i~~~l~ 219 (929)
..-+++.+.+.+++ ...+.+.|+.|+||+|+|..++...--... +-.| .-++..+..+|+..+.
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~-------- 80 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLT-------- 80 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEe--------
Confidence 44567777777766 578999999999999999998887632110 0000 0011111111111000
Q ss_pred CCCCCCccHHHHHHHHHHHHH----hcCcEEEEEecCCCcCC--ccccccCCCCCCCCcEEEEEeCc-ccccccCC--cc
Q 042574 220 QSLPENEDKVRRAGRLSEMLK----AKAKFVLILDDMWEAFP--LEEVGIPEPSEENGCKLVITTRS-LGVSRSMD--CK 290 (929)
Q Consensus 220 ~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~ilvTtR~-~~v~~~~~--~~ 290 (929)
.......-..+.++.+.+.+. .+++-++|+|+++.... -..+...+..-..++.+|++|.+ ..+..... +.
T Consensus 81 p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq 160 (334)
T PRK07993 81 PEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCR 160 (334)
T ss_pred cccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccc
Confidence 000000111233334444332 35677889999976422 12222111111335566655554 44443222 33
Q ss_pred eEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHH
Q 042574 291 EIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIV 340 (929)
Q Consensus 291 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 340 (929)
.+.+.+++.+++.+.+.+..+.+ .+.+..++..++|.|..+.
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~~~~--------~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSREVTMS--------QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred cccCCCCCHHHHHHHHHHccCCC--------HHHHHHHHHHcCCCHHHHH
Confidence 48999999999998886543211 2346778999999996543
No 227
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.40 E-value=0.013 Score=60.53 Aligned_cols=91 Identities=14% Similarity=0.173 Sum_probs=53.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhc---CCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCC---------CCc---
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLDLIKLQTEIATALKQSLP---------ENE--- 226 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~~~--- 226 (929)
..++.|+|.+|+|||+||.+++....... +....++|++....++..++. ++++..+.... ...
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCHH
Confidence 57999999999999999999975531111 113578999988777655443 33333332110 001
Q ss_pred cHHHHHHHHHHHHHhc-CcEEEEEecCC
Q 042574 227 DKVRRAGRLSEMLKAK-AKFVLILDDMW 253 (929)
Q Consensus 227 ~~~~~~~~l~~~l~~~-~~~LlvlDdv~ 253 (929)
+.......+...+.+. +.-++|+|.+.
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis 125 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVT 125 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcH
Confidence 1122223344444444 67788888874
No 228
>PRK04296 thymidine kinase; Provisional
Probab=96.39 E-value=0.0031 Score=62.61 Aligned_cols=112 Identities=9% Similarity=0.021 Sum_probs=59.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCC--CccHHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPE--NEDKVRRAGRLSEMLK 240 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~ 240 (929)
.++.|+|+.|.||||+|..++.+... ....+..+. ..++.......++.+++..... ..........+.. .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~---~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEE---RGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH---cCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--h
Confidence 57889999999999999999988732 223333342 1112122223345555543221 1111222222222 2
Q ss_pred hcCcEEEEEecCCCc--CCccccccCCCCCCCCcEEEEEeCcccc
Q 042574 241 AKAKFVLILDDMWEA--FPLEEVGIPEPSEENGCKLVITTRSLGV 283 (929)
Q Consensus 241 ~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~~v 283 (929)
.++.-+||+|.+.-- +++.++...+ ...|..||+|.++.+.
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 345568999999432 1122222221 2467889999988554
No 229
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.38 E-value=0.006 Score=74.52 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=35.1
Q ss_pred ccccccchHHHHHHHHHHhc-------CC--CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLM-------GD--KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~-------~~--~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..++|. +..++.+.+.+. ++ ...++.++|+.|+|||.+|+.++...
T Consensus 566 ~~v~GQ--~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 566 ERVIGQ--DHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CeEcCh--HHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 578888 566666666652 12 24578999999999999999998876
No 230
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.37 E-value=0.0047 Score=56.96 Aligned_cols=25 Identities=40% Similarity=0.602 Sum_probs=23.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
--|+|.|++|+||||+++++.+.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHH
Confidence 4689999999999999999999984
No 231
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.36 E-value=0.0011 Score=66.23 Aligned_cols=81 Identities=23% Similarity=0.282 Sum_probs=35.5
Q ss_pred CCcEEEecCCCCcccCcccccccccceeecccc--cccccCc-cccccCCCCEEEccCCCCcccc--ccccCCCCCCEEE
Q 042574 547 GLKVLNLSHTNIEVLPSSVSNLTNLRSLLLRWC--RRLKRVP-SVAKLLALQYLDLERTWIEEVP--EGMEMLENLSHLY 621 (929)
Q Consensus 547 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~--~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~ 621 (929)
.|+.|++.+..++.+- .+-.|++|++|.++.| .....++ ...++++|++|++++|+|..+. ..+..+++|..|+
T Consensus 44 ~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 44 ELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred chhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence 3444444444433221 2233455555555554 2222333 2334455555555555444211 1234445555555
Q ss_pred ccCCCCc
Q 042574 622 LSSPPLK 628 (929)
Q Consensus 622 l~~~~~~ 628 (929)
++.|..+
T Consensus 123 l~n~~~~ 129 (260)
T KOG2739|consen 123 LFNCSVT 129 (260)
T ss_pred cccCCcc
Confidence 5555433
No 232
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.35 E-value=0.015 Score=67.51 Aligned_cols=46 Identities=17% Similarity=0.361 Sum_probs=36.2
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+++|+ +..++.+...+......-|.|+|++|+|||++|+.+++..
T Consensus 65 ~~iiGq--s~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 65 DEIIGQ--EEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHeeCc--HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 578998 5566667666666555667899999999999999998754
No 233
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.33 E-value=0.026 Score=58.43 Aligned_cols=92 Identities=20% Similarity=0.297 Sum_probs=56.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCC-HHHHHHHHHHHhcC-------CCCCCccHH---
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQTEIATALKQ-------SLPENEDKV--- 229 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~-------~~~~~~~~~--- 229 (929)
.-..++|.|.+|+||||||+++++..... +-+.++++-+++... +.++.+++...-.. ...++....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~--~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKA--HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 34679999999999999999999987422 234577777877654 44555555442111 011111111
Q ss_pred --HHHHHHHHHHH-h-cCcEEEEEecCCC
Q 042574 230 --RRAGRLSEMLK-A-KAKFVLILDDMWE 254 (929)
Q Consensus 230 --~~~~~l~~~l~-~-~~~~LlvlDdv~~ 254 (929)
..+..+.+++. + ++.+|+++||+..
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 11223445553 3 8999999999854
No 234
>PRK10867 signal recognition particle protein; Provisional
Probab=96.30 E-value=0.11 Score=58.13 Aligned_cols=57 Identities=23% Similarity=0.263 Sum_probs=35.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCH--HHHHHHHHHHhcC
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDL--IKLQTEIATALKQ 220 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~ 220 (929)
.+.+|.++|++|+||||.|.+++..+... . ...+..|++. .+.. .+.++..++..+.
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~-~-G~kV~lV~~D-~~R~aa~eQL~~~a~~~gv 157 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK-K-KKKVLLVAAD-VYRPAAIEQLKTLGEQIGV 157 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh-c-CCcEEEEEcc-ccchHHHHHHHHHHhhcCC
Confidence 36899999999999999999998877322 1 2234445443 2322 2334445555554
No 235
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.30 E-value=0.012 Score=62.58 Aligned_cols=85 Identities=16% Similarity=0.213 Sum_probs=52.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLP-----ENEDKVRRAGRLS 236 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 236 (929)
-+++-|+|++|+||||||.+++..... .-..++|++....++.. .+++++.+.. .....++....+.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~---~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 579999999999999999998877632 23457888877665543 2344443211 1122223333333
Q ss_pred HHHHhcCcEEEEEecCCC
Q 042574 237 EMLKAKAKFVLILDDMWE 254 (929)
Q Consensus 237 ~~l~~~~~~LlvlDdv~~ 254 (929)
..+.++..-++|+|.|-.
T Consensus 127 ~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHhhccCCcEEEEcchhh
Confidence 333345677899999853
No 236
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.29 E-value=0.011 Score=55.99 Aligned_cols=116 Identities=22% Similarity=0.161 Sum_probs=62.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECC---CCCHHHHHHHHH----HHhcCC--CCCCccHH--HH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ---PLDLIKLQTEIA----TALKQS--LPENEDKV--RR 231 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~----~~l~~~--~~~~~~~~--~~ 231 (929)
..|-|++..|.||||+|...+-+.. ++-..+.++..-. ..+....++.+- .+.+.. +....... ..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~---~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL---GHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHH
Confidence 4788999999999999999888763 2333455554333 334444444331 000110 00011111 11
Q ss_pred H----HHHHHHHHhcCcEEEEEecCCCc-----CCccccccCCCCCCCCcEEEEEeCcc
Q 042574 232 A----GRLSEMLKAKAKFVLILDDMWEA-----FPLEEVGIPEPSEENGCKLVITTRSL 281 (929)
Q Consensus 232 ~----~~l~~~l~~~~~~LlvlDdv~~~-----~~~~~l~~~~~~~~~gs~ilvTtR~~ 281 (929)
+ ....+.+..+.-=|||||++-.. .+.+++...+.....+.-||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1 12223333456789999998532 23334443344445577899999984
No 237
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.017 Score=62.82 Aligned_cols=88 Identities=16% Similarity=0.097 Sum_probs=51.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECC-CCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLK 240 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 240 (929)
..+++++|+.|+||||++.+++...... .....+..++... .....+.++...+.++.+.....+...... ....+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~-~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~-~l~~l- 213 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMR-FGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQL-ALAEL- 213 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHH-HHHHh-
Confidence 4699999999999999999999876322 1223456665332 223455566666666655432222222222 22333
Q ss_pred hcCcEEEEEecCC
Q 042574 241 AKAKFVLILDDMW 253 (929)
Q Consensus 241 ~~~~~LlvlDdv~ 253 (929)
. ++=++++|..-
T Consensus 214 ~-~~DlVLIDTaG 225 (374)
T PRK14722 214 R-NKHMVLIDTIG 225 (374)
T ss_pred c-CCCEEEEcCCC
Confidence 2 34566688873
No 238
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.29 E-value=0.00066 Score=78.93 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=24.2
Q ss_pred CCCcceeecccccccccccccCccccCCCccEEEEeccCCCcc
Q 042574 835 LPRLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCPKLKR 877 (929)
Q Consensus 835 ~p~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~~L~~ 877 (929)
+++|+.|.+..|...+.-........+..++.+.+.+|+.+..
T Consensus 400 ~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 400 SDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred CCccceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence 3447777777776655443311111155666677777766654
No 239
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.29 E-value=0.24 Score=53.87 Aligned_cols=72 Identities=25% Similarity=0.234 Sum_probs=47.7
Q ss_pred HHHHHHHHhcC---------CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEEC-CCCCHHHHHHHHHHHh
Q 042574 149 VVERIWEDLMG---------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVS-QPLDLIKLQTEIATAL 218 (929)
Q Consensus 149 ~~~~l~~~l~~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s-~~~~~~~~~~~i~~~l 218 (929)
..++|++.+.. ..+.||-.+|.-|.||||.|-++++.+.. ..+ .+.-|++. ..+...+.++.++.++
T Consensus 78 V~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk--~~~-kvllVaaD~~RpAA~eQL~~La~q~ 154 (451)
T COG0541 78 VYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK--KGK-KVLLVAADTYRPAAIEQLKQLAEQV 154 (451)
T ss_pred HHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH--cCC-ceEEEecccCChHHHHHHHHHHHHc
Confidence 34556666542 23689999999999999999999999843 222 23334332 2334556677888888
Q ss_pred cCCCC
Q 042574 219 KQSLP 223 (929)
Q Consensus 219 ~~~~~ 223 (929)
+.++-
T Consensus 155 ~v~~f 159 (451)
T COG0541 155 GVPFF 159 (451)
T ss_pred CCcee
Confidence 77643
No 240
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.27 E-value=0.0079 Score=74.05 Aligned_cols=46 Identities=22% Similarity=0.375 Sum_probs=34.7
Q ss_pred ccccccchHHHHHHHHHHhcC-------C--CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMG-------D--KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~-------~--~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..++|+ +..++.+...+.. + ...++.++|+.|+|||++|+.+....
T Consensus 565 ~~v~GQ--~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 565 ERVVGQ--DEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred cccCCC--hHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 568887 5566666666542 1 13578899999999999999999876
No 241
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.26 E-value=0.022 Score=59.17 Aligned_cols=82 Identities=26% Similarity=0.348 Sum_probs=51.1
Q ss_pred HHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHH
Q 042574 152 RIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRR 231 (929)
Q Consensus 152 ~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 231 (929)
.+.+++. ...-+.++|.+|+|||.||.++.++.. . ..+ .+.+++ ..++..++...... . ..
T Consensus 97 ~~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~-~g~-sv~f~~------~~el~~~Lk~~~~~----~----~~ 157 (254)
T COG1484 97 SLVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-K-AGI-SVLFIT------APDLLSKLKAAFDE----G----RL 157 (254)
T ss_pred HHHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-H-cCC-eEEEEE------HHHHHHHHHHHHhc----C----ch
Confidence 3444444 566799999999999999999999984 2 223 356664 34555555554432 1 11
Q ss_pred HHHHHHHHHhcCcEEEEEecCCC
Q 042574 232 AGRLSEMLKAKAKFVLILDDMWE 254 (929)
Q Consensus 232 ~~~l~~~l~~~~~~LlvlDdv~~ 254 (929)
...+.+.+ .+-=||||||+-.
T Consensus 158 ~~~l~~~l--~~~dlLIiDDlG~ 178 (254)
T COG1484 158 EEKLLREL--KKVDLLIIDDIGY 178 (254)
T ss_pred HHHHHHHh--hcCCEEEEecccC
Confidence 12233333 2455899999843
No 242
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.24 E-value=0.021 Score=61.08 Aligned_cols=91 Identities=14% Similarity=0.125 Sum_probs=56.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhh---cCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCC---------CccHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKE---TNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPE---------NEDKV 229 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 229 (929)
.+++-|+|++|+|||+||.+++-..... ...-..++|++....++..++. ++++.++.+... ..+..
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~e 174 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTSE 174 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCHH
Confidence 5789999999999999999876543111 1123468999998888888775 456666543211 01112
Q ss_pred H---HHHHHHHHHHhcCcEEEEEecCC
Q 042574 230 R---RAGRLSEMLKAKAKFVLILDDMW 253 (929)
Q Consensus 230 ~---~~~~l~~~l~~~~~~LlvlDdv~ 253 (929)
. ....+...+...+--|+|+|.+-
T Consensus 175 ~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 175 HQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 2 22233333334455678888874
No 243
>PRK06696 uridine kinase; Validated
Probab=96.24 E-value=0.0069 Score=61.98 Aligned_cols=40 Identities=20% Similarity=0.434 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhc---CCCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 147 KKVVERIWEDLM---GDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 147 ~~~~~~l~~~l~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+.+++|.+.+. .+...+|+|.|.+|+||||+|+++...+
T Consensus 4 ~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 4 KQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 344555555553 4567899999999999999999999987
No 244
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.22 E-value=0.01 Score=71.99 Aligned_cols=102 Identities=19% Similarity=0.291 Sum_probs=55.8
Q ss_pred ccccccchHHHHHHHHHHhcC-------C-C-eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMG-------D-K-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIK 209 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~-------~-~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 209 (929)
..++|. +..++.+...+.. + . ..++.++|+.|+|||+||+.++.... ...+.++.++-.+..
T Consensus 454 ~~v~GQ--~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~------~~~~~~d~se~~~~~- 524 (731)
T TIGR02639 454 AKIFGQ--DEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG------VHLERFDMSEYMEKH- 524 (731)
T ss_pred cceeCc--HHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc------CCeEEEeCchhhhcc-
Confidence 456776 4555666655531 1 1 34689999999999999999988761 223444444322111
Q ss_pred HHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCC
Q 042574 210 LQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWE 254 (929)
Q Consensus 210 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~ 254 (929)
.+...++...... .......+.+.+.....-+++||+++.
T Consensus 525 ---~~~~lig~~~gyv--g~~~~~~l~~~~~~~p~~VvllDEiek 564 (731)
T TIGR02639 525 ---TVSRLIGAPPGYV--GFEQGGLLTEAVRKHPHCVLLLDEIEK 564 (731)
T ss_pred ---cHHHHhcCCCCCc--ccchhhHHHHHHHhCCCeEEEEechhh
Confidence 1122222221100 011122234444444567999999975
No 245
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.21 E-value=0.027 Score=59.70 Aligned_cols=86 Identities=19% Similarity=0.200 Sum_probs=47.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCC-CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLK 240 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 240 (929)
.++++|+|++|+||||++.+++..+.. ...-..+..|+..... ...+.+....+.++.+.....+.... ....+.+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~-~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l-~~~l~~~- 270 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVL-EHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKEL-RKALDRL- 270 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-HcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHH-HHHHHHc-
Confidence 579999999999999999999887732 2111345666644311 22333334444455443322232222 2333333
Q ss_pred hcCcEEEEEec
Q 042574 241 AKAKFVLILDD 251 (929)
Q Consensus 241 ~~~~~LlvlDd 251 (929)
. ..=++++|.
T Consensus 271 ~-~~d~vliDt 280 (282)
T TIGR03499 271 R-DKDLILIDT 280 (282)
T ss_pred c-CCCEEEEeC
Confidence 2 245677775
No 246
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.20 E-value=0.02 Score=59.29 Aligned_cols=169 Identities=20% Similarity=0.253 Sum_probs=92.7
Q ss_pred ccccccchHHHHHHHHHHh----cCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHH-HHHH
Q 042574 139 ATLAGKKTKKVVERIWEDL----MGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIK-LQTE 213 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~-~~~~ 213 (929)
..++|- ..+...+-+++ ..++..-|.|+|+.|.|||+|...+..+.+...++| .-|......-.++ .++.
T Consensus 24 ~~l~g~--~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 24 INLFGV--QDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKG 98 (408)
T ss_pred cceeeh--HHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHH
Confidence 456664 33333444443 235566789999999999999888777743333333 4444444332222 3455
Q ss_pred HHHHhcCC----CCCCccHHHHHHHHHHHHHh-----cCcEEEEEecCCCcCC------c-cccccCCCCCCCCcEEEEE
Q 042574 214 IATALKQS----LPENEDKVRRAGRLSEMLKA-----KAKFVLILDDMWEAFP------L-EEVGIPEPSEENGCKLVIT 277 (929)
Q Consensus 214 i~~~l~~~----~~~~~~~~~~~~~l~~~l~~-----~~~~LlvlDdv~~~~~------~-~~l~~~~~~~~~gs~ilvT 277 (929)
|..++... ........+....+...+.+ +.+++.|+|.++--.. + .-+-..-....+-|-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 55554332 11122333344555555542 2368888888753211 0 1111111223566788899
Q ss_pred eCcc-------cccccCCcce-EecccCCHHHHHHHHHhhhcc
Q 042574 278 TRSL-------GVSRSMDCKE-IGVELLSQEEALNLFLDKVRI 312 (929)
Q Consensus 278 tR~~-------~v~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~ 312 (929)
||-. .|-.++.... +-++++.-++...++++....
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~v 221 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLSV 221 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhcC
Confidence 9963 2334444444 556778888888888876533
No 247
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.19 E-value=0.0085 Score=73.55 Aligned_cols=46 Identities=17% Similarity=0.322 Sum_probs=34.7
Q ss_pred ccccccchHHHHHHHHHHhcC-------CC--eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMG-------DK--VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~-------~~--~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..++|. +..++.+...+.. .+ ...+.++|+.|+|||+||+.+++.+
T Consensus 509 ~~v~GQ--~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 509 KRIIGQ--DEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CcCcCh--HHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 567887 5667777666531 11 3467899999999999999999876
No 248
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.19 E-value=0.11 Score=55.53 Aligned_cols=176 Identities=11% Similarity=0.109 Sum_probs=91.7
Q ss_pred HHHHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCc----E--EEEEEECCCCCHHHHHHHHHHHhcC
Q 042574 148 KVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFN----V--VIWVTVSQPLDLIKLQTEIATALKQ 220 (929)
Q Consensus 148 ~~~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~----~--~~wv~~s~~~~~~~~~~~i~~~l~~ 220 (929)
...+++...+..++ ...+.+.|+.|+||+++|+.++...--...... | .-++..+..+|+..+ ..
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p 81 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI--------KP 81 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------ec
Confidence 34566777776666 568999999999999999999887632110000 0 000000011111000 00
Q ss_pred CCCCCccHHHHHHHHHHHHH----hcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEEEeCc-ccccccCC--cce
Q 042574 221 SLPENEDKVRRAGRLSEMLK----AKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVITTRS-LGVSRSMD--CKE 291 (929)
Q Consensus 221 ~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~-~~v~~~~~--~~~ 291 (929)
......-..+.++.+.+.+. .+++-++|+|+++... ....+..-+..-..++.+|++|.+ ..+..... +..
T Consensus 82 ~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~ 161 (319)
T PRK06090 82 EKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQ 161 (319)
T ss_pred CcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccee
Confidence 00000011222233333331 2446688899997642 222222111111335566655554 44443332 333
Q ss_pred EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHH
Q 042574 292 IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTV 342 (929)
Q Consensus 292 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 342 (929)
+.+.+++.+++.+.+.... . . .+..+++.++|.|+.+..+
T Consensus 162 ~~~~~~~~~~~~~~L~~~~-~-----~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 162 WVVTPPSTAQAMQWLKGQG-I-----T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred EeCCCCCHHHHHHHHHHcC-C-----c-----hHHHHHHHcCCCHHHHHHH
Confidence 8999999999999886531 1 1 1346789999999877654
No 249
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.16 E-value=0.011 Score=63.51 Aligned_cols=58 Identities=16% Similarity=0.307 Sum_probs=43.2
Q ss_pred ccccccchHHHHHHHHHHhcC------CCeeEEEEEcCCCChHHHHHHHHHHHHhhh----cCCCcEEEE
Q 042574 139 ATLAGKKTKKVVERIWEDLMG------DKVTKIGVWGMGGIGKTTIMKEINNRLQKE----TNKFNVVIW 198 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~~f~~~~w 198 (929)
..++|. ++.++++++++.. ...+++.++|++|+||||||+.+++..... .+.|...-|
T Consensus 51 ~~~~G~--~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 51 HDFFGM--EEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hhccCc--HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 368886 6777888877743 235899999999999999999999988331 124555556
No 250
>PRK06921 hypothetical protein; Provisional
Probab=96.13 E-value=0.022 Score=59.63 Aligned_cols=39 Identities=23% Similarity=0.384 Sum_probs=29.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEE
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 201 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 201 (929)
...-+.++|..|+|||.||.++++.... .. ...++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~-~~-g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMR-KK-GVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhh-hc-CceEEEEEH
Confidence 3567999999999999999999998732 21 344667764
No 251
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.12 E-value=0.04 Score=56.58 Aligned_cols=88 Identities=15% Similarity=0.226 Sum_probs=50.8
Q ss_pred HHHHHHHHhcC--CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCc
Q 042574 149 VVERIWEDLMG--DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENE 226 (929)
Q Consensus 149 ~~~~l~~~l~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~ 226 (929)
.+..+.++..+ .....+.++|.+|+|||+||.++++.... ....+++++ ..++...+-..... ...
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~---~g~~v~~it------~~~l~~~l~~~~~~---~~~ 151 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL---RGKSVLIIT------VADIMSAMKDTFSN---SET 151 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEE------HHHHHHHHHHHHhh---ccc
Confidence 34444444432 22357899999999999999999998742 223456664 34444444333321 111
Q ss_pred cHHHHHHHHHHHHHhcCcEEEEEecCCC
Q 042574 227 DKVRRAGRLSEMLKAKAKFVLILDDMWE 254 (929)
Q Consensus 227 ~~~~~~~~l~~~l~~~~~~LlvlDdv~~ 254 (929)
. ...+.+.+. +.=+||+||+..
T Consensus 152 ~----~~~~l~~l~--~~dlLvIDDig~ 173 (244)
T PRK07952 152 S----EEQLLNDLS--NVDLLVIDEIGV 173 (244)
T ss_pred c----HHHHHHHhc--cCCEEEEeCCCC
Confidence 1 112334442 355889999954
No 252
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.12 E-value=0.024 Score=61.19 Aligned_cols=86 Identities=16% Similarity=0.233 Sum_probs=47.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCC--HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD--LIKLQTEIATALKQSLPENEDKVRRAGRLSEML 239 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 239 (929)
.++|+|+|++|+||||++.+++..+. . .. ..+..++.. .+. ..+.++..++.++.+.....+...... ....+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~-~-~G-kkVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~-aL~~l 315 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH-G-KK-KTVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTR-ALTYF 315 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH-H-cC-CcEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHHHHHH-HHHHH
Confidence 57999999999999999999998773 2 22 234555543 232 223334444455544322223333332 22333
Q ss_pred Hh-cCcEEEEEecC
Q 042574 240 KA-KAKFVLILDDM 252 (929)
Q Consensus 240 ~~-~~~~LlvlDdv 252 (929)
.. .+.=++++|-.
T Consensus 316 k~~~~~DvVLIDTa 329 (436)
T PRK11889 316 KEEARVDYILIDTA 329 (436)
T ss_pred HhccCCCEEEEeCc
Confidence 21 12346677776
No 253
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.11 E-value=0.032 Score=67.97 Aligned_cols=150 Identities=14% Similarity=0.202 Sum_probs=76.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKA 241 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (929)
.+-|.++|++|+||||||+.+++... ..| +.+..+ ++ ... . ..........+.+....
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~---~~~---i~i~~~------~i----~~~----~--~g~~~~~l~~lf~~a~~ 269 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAG---AYF---ISINGP------EI----MSK----Y--YGESEERLREIFKEAEE 269 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhC---CeE---EEEecH------HH----hcc----c--ccHHHHHHHHHHHHHHh
Confidence 46789999999999999999998762 222 222211 11 100 0 01122233344444444
Q ss_pred cCcEEEEEecCCCcCC-------------ccccccCCCC-CCCCcEEEE-EeCcc-cccccC---C-cce-EecccCCHH
Q 042574 242 KAKFVLILDDMWEAFP-------------LEEVGIPEPS-EENGCKLVI-TTRSL-GVSRSM---D-CKE-IGVELLSQE 300 (929)
Q Consensus 242 ~~~~LlvlDdv~~~~~-------------~~~l~~~~~~-~~~gs~ilv-TtR~~-~v~~~~---~-~~~-~~l~~L~~~ 300 (929)
..+.+|+|||++.... ...+...+.. ...+..++| ||... .+...+ + -.. +.+...+.+
T Consensus 270 ~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~ 349 (733)
T TIGR01243 270 NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKR 349 (733)
T ss_pred cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHH
Confidence 5678999999854210 0111111111 123334444 44332 222111 1 112 777778888
Q ss_pred HHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccH
Q 042574 301 EALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPL 337 (929)
Q Consensus 301 ~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 337 (929)
+-.+++......... . .......+++.+.|.--
T Consensus 350 ~R~~Il~~~~~~~~l--~--~d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 350 ARKEILKVHTRNMPL--A--EDVDLDKLAEVTHGFVG 382 (733)
T ss_pred HHHHHHHHHhcCCCC--c--cccCHHHHHHhCCCCCH
Confidence 888888755432211 1 11224567788877653
No 254
>PRK09354 recA recombinase A; Provisional
Probab=96.11 E-value=0.018 Score=61.81 Aligned_cols=85 Identities=15% Similarity=0.207 Sum_probs=53.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLP-----ENEDKVRRAGRLS 236 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 236 (929)
-+++-|+|++|+||||||.+++..... .-..++|++....++.. .+++++.+.. .....++....+.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~---~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 579999999999999999998877632 23567899887777653 3444443211 1112233333333
Q ss_pred HHHHhcCcEEEEEecCCC
Q 042574 237 EMLKAKAKFVLILDDMWE 254 (929)
Q Consensus 237 ~~l~~~~~~LlvlDdv~~ 254 (929)
..+.++..-++|+|.|-.
T Consensus 132 ~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHhhcCCCCEEEEeChhh
Confidence 333445677899999853
No 255
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.08 E-value=0.013 Score=62.50 Aligned_cols=84 Identities=19% Similarity=0.229 Sum_probs=52.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCC-----CCCccHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSL-----PENEDKVRRAGRLS 236 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 236 (929)
-+++-|+|++|+||||||.+++..... ....++|++....++.. .+.+++.+. ....+.++....+.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~---~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQK---LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 578999999999999999998877632 23457899877766653 233333221 11112222333333
Q ss_pred HHHHhcCcEEEEEecCC
Q 042574 237 EMLKAKAKFVLILDDMW 253 (929)
Q Consensus 237 ~~l~~~~~~LlvlDdv~ 253 (929)
..+.++..-++|+|.|-
T Consensus 127 ~li~s~~~~lIVIDSva 143 (325)
T cd00983 127 SLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHhccCCCEEEEcchH
Confidence 33334567789999985
No 256
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.08 E-value=0.0066 Score=65.29 Aligned_cols=36 Identities=28% Similarity=0.357 Sum_probs=28.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEE
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 201 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 201 (929)
.-+.++|..|+|||.||..+++... .. ...++|+++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~-~~--g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL-DR--GKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-HC--CCeEEEEEH
Confidence 6799999999999999999999873 22 234677764
No 257
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.16 Score=57.81 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=71.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLK 240 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 240 (929)
..+-|..+|++|.|||++|+++++.. .-.| +.+... ++ .... ..+.+..+..+.+.-+
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~---~~nF-----lsvkgp----EL----~sk~------vGeSEr~ir~iF~kAR 524 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEA---GMNF-----LSVKGP----EL----FSKY------VGESERAIREVFRKAR 524 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhh---cCCe-----eeccCH----HH----HHHh------cCchHHHHHHHHHHHh
Confidence 46889999999999999999999976 2233 222211 11 1111 1122333344444444
Q ss_pred hcCcEEEEEecCCCcCC-------------ccccccCCCCCCCCcEEEE---EeCcccccc-cCC---cce-EecccCCH
Q 042574 241 AKAKFVLILDDMWEAFP-------------LEEVGIPEPSEENGCKLVI---TTRSLGVSR-SMD---CKE-IGVELLSQ 299 (929)
Q Consensus 241 ~~~~~LlvlDdv~~~~~-------------~~~l~~~~~~~~~gs~ilv---TtR~~~v~~-~~~---~~~-~~l~~L~~ 299 (929)
+-.+.+++||.++.... +..+...+........|+| |-|...+-. .+. -.. +.++.-+.
T Consensus 525 ~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~ 604 (693)
T KOG0730|consen 525 QVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDL 604 (693)
T ss_pred hcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccH
Confidence 45679999999864210 1112222222222223333 444433322 222 222 66777777
Q ss_pred HHHHHHHHhhhcccCC
Q 042574 300 EEALNLFLDKVRISTS 315 (929)
Q Consensus 300 ~~~~~Lf~~~~~~~~~ 315 (929)
+.-.++|+.++....-
T Consensus 605 ~aR~~Ilk~~~kkmp~ 620 (693)
T KOG0730|consen 605 EARLEILKQCAKKMPF 620 (693)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 7788899988766543
No 258
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.05 E-value=0.011 Score=70.73 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=34.5
Q ss_pred ccccccchHHHHHHHHHHhcC-------C--CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMG-------D--KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~-------~--~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..++|. +..++.+.+.+.. . ....+.++|++|+|||++|+.++...
T Consensus 458 ~~ViGQ--~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQ--DKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCc--HHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 457887 5666666666541 1 14578999999999999999998876
No 259
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.04 E-value=0.017 Score=61.50 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=24.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
-+..++|||++|.|||.+|+.+++..
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 46899999999999999999999987
No 260
>PRK06547 hypothetical protein; Provisional
Probab=96.03 E-value=0.0091 Score=57.91 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=28.2
Q ss_pred HHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 153 IWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 153 l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+...+......+|+|.|++|+||||+|+.+....
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444556678899999999999999999998864
No 261
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.02 E-value=0.028 Score=52.05 Aligned_cols=45 Identities=31% Similarity=0.425 Sum_probs=33.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCC
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSL 222 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~ 222 (929)
+|.|-|++|+||||+|+.++++.. ..+ | +--.++++|++..+.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g-----l~~---v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG-----LKL---V------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC-----Cce---e------eccHHHHHHHHHcCCCH
Confidence 689999999999999999999872 111 1 23356777887776543
No 262
>PHA00729 NTP-binding motif containing protein
Probab=96.01 E-value=0.0094 Score=59.66 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=30.0
Q ss_pred HHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 151 ERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 151 ~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.++++.+...+...|.|+|.+|+||||||..+.+..
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345566666677789999999999999999999975
No 263
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.00 E-value=0.035 Score=54.22 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
++.++|++|+||||+++.++....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~ 25 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLK 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998873
No 264
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.99 E-value=0.0039 Score=62.37 Aligned_cols=83 Identities=23% Similarity=0.215 Sum_probs=47.3
Q ss_pred cCCCCcEEEecCC--CCc-ccCcccccccccceeecccccc--cccCccccccCCCCEEEccCCCCccccc----cccCC
Q 042574 544 HMRGLKVLNLSHT--NIE-VLPSSVSNLTNLRSLLLRWCRR--LKRVPSVAKLLALQYLDLERTWIEEVPE----GMEML 614 (929)
Q Consensus 544 ~l~~L~~L~l~~~--~i~-~lp~~i~~l~~L~~L~l~~~~~--~~~~~~~~~l~~L~~L~l~~~~i~~lp~----~i~~l 614 (929)
.+++|++|.++.| .+. .++.....+++|++|++++|+. +..++.+..+.+|..|++.+|..+.+-. .+.-+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll 142 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLL 142 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHh
Confidence 4556666666666 332 3433344456666666666542 2333456666777777777775554321 24456
Q ss_pred CCCCEEEccCCC
Q 042574 615 ENLSHLYLSSPP 626 (929)
Q Consensus 615 ~~L~~L~l~~~~ 626 (929)
++|.+|+-....
T Consensus 143 ~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 143 PSLKYLDGCDVD 154 (260)
T ss_pred hhhccccccccC
Confidence 777777655443
No 265
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.97 E-value=0.029 Score=63.18 Aligned_cols=185 Identities=16% Similarity=0.224 Sum_probs=100.2
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
.++||. +..+..|...+..+. ..--...|+-|+||||+|+-++.-+.-... ......+.-...++|...
T Consensus 16 ~evvGQ--e~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~--------~~~ePC~~C~~Ck~I~~g 85 (515)
T COG2812 16 DDVVGQ--EHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG--------PTAEPCGKCISCKEINEG 85 (515)
T ss_pred HHhccc--HHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC--------CCCCcchhhhhhHhhhcC
Confidence 678997 556677777777665 456788999999999999998887632210 011111111222222221
Q ss_pred hcCCC---CC-CccHHHHHHHHHHHHH----hcCcEEEEEecCCC--cCCccccccCCCCCCCCcEEE-EEeCccccccc
Q 042574 218 LKQSL---PE-NEDKVRRAGRLSEMLK----AKAKFVLILDDMWE--AFPLEEVGIPEPSEENGCKLV-ITTRSLGVSRS 286 (929)
Q Consensus 218 l~~~~---~~-~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~gs~il-vTtR~~~v~~~ 286 (929)
-..+. +. .....+.++.+.+... .++.=+.|+|+|.- ...+..+..-+..--.+.+.| .||-.+.+...
T Consensus 86 ~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~T 165 (515)
T COG2812 86 SLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNT 165 (515)
T ss_pred CcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchh
Confidence 00000 00 0111222333443332 45677889999963 233433332222112244444 45555555432
Q ss_pred C--CcceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCcc
Q 042574 287 M--DCKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLP 336 (929)
Q Consensus 287 ~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 336 (929)
. .++.+.+..++.++-...+...+....- ...++....|++..+|..
T Consensus 166 IlSRcq~f~fkri~~~~I~~~L~~i~~~E~I---~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 166 ILSRCQRFDFKRLDLEEIAKHLAAILDKEGI---NIEEDALSLIARAAEGSL 214 (515)
T ss_pred hhhccccccccCCCHHHHHHHHHHHHHhcCC---ccCHHHHHHHHHHcCCCh
Confidence 2 2333999999999998888887765432 223455566777766654
No 266
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.94 E-value=0.046 Score=66.57 Aligned_cols=149 Identities=14% Similarity=0.154 Sum_probs=79.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKA 241 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (929)
.+-|.++|++|+|||++|+++++... ..| +.+..+ + ++.. + ..........+......
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~---~~f---i~v~~~------~----l~~~----~--vGese~~i~~~f~~A~~ 544 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESG---ANF---IAVRGP------E----ILSK----W--VGESEKAIREIFRKARQ 544 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcC---CCE---EEEehH------H----Hhhc----c--cCcHHHHHHHHHHHHHh
Confidence 45689999999999999999999762 222 222211 1 1111 1 11122334444444445
Q ss_pred cCcEEEEEecCCCcC-----C---------ccccccCCCC--CCCCcEEEEEeCcccccc-c-C---Ccce-EecccCCH
Q 042574 242 KAKFVLILDDMWEAF-----P---------LEEVGIPEPS--EENGCKLVITTRSLGVSR-S-M---DCKE-IGVELLSQ 299 (929)
Q Consensus 242 ~~~~LlvlDdv~~~~-----~---------~~~l~~~~~~--~~~gs~ilvTtR~~~v~~-~-~---~~~~-~~l~~L~~ 299 (929)
..+.+|++|+++.-. . ...+...+.. ...+..||.||...+... . . .... +.++..+.
T Consensus 545 ~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~ 624 (733)
T TIGR01243 545 AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE 624 (733)
T ss_pred cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH
Confidence 678999999986321 0 0111111211 123445555665433221 1 1 1223 78888899
Q ss_pred HHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCcc
Q 042574 300 EEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLP 336 (929)
Q Consensus 300 ~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 336 (929)
++-.++|+............+ ...+++.+.|.-
T Consensus 625 ~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 625 EARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred HHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 999999976654322111122 345667777654
No 267
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.017 Score=67.88 Aligned_cols=154 Identities=15% Similarity=0.166 Sum_probs=91.3
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcC-----CCcEEEEEEECCCCCHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETN-----KFNVVIWVTVSQPLDLIKLQTE 213 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----~f~~~~wv~~s~~~~~~~~~~~ 213 (929)
.+++|| ++++.++++.|....-.--.++|.+|+|||++|.-++.+.. ... ....++-. |+..+
T Consensus 170 DPvIGR--d~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv-~g~VP~~L~~~~i~sL------D~g~L--- 237 (786)
T COG0542 170 DPVIGR--DEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIV-NGDVPESLKDKRIYSL------DLGSL--- 237 (786)
T ss_pred CCCcCh--HHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHh-cCCCCHHHcCCEEEEe------cHHHH---
Confidence 578999 78999999999765444456789999999999999888762 211 01111111 11111
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC--------Ccc--ccccCCCCCCCCcEEEEEeCcccc
Q 042574 214 IATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF--------PLE--EVGIPEPSEENGCKLVITTRSLGV 283 (929)
Q Consensus 214 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--------~~~--~l~~~~~~~~~gs~ilvTtR~~~v 283 (929)
+.. ..-..+-+++...+.+.+.+.++.+|++|.+..-. ..+ .+..|-...+.--.|-.||-++--
T Consensus 238 ----vAG-akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYR 312 (786)
T COG0542 238 ----VAG-AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYR 312 (786)
T ss_pred ----hcc-ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHH
Confidence 111 11234566777778888876669999999986421 122 233333222333345566654211
Q ss_pred -------cccCCcceEecccCCHHHHHHHHHhh
Q 042574 284 -------SRSMDCKEIGVELLSQEEALNLFLDK 309 (929)
Q Consensus 284 -------~~~~~~~~~~l~~L~~~~~~~Lf~~~ 309 (929)
|-...-+.+.++.-+.+++..+++..
T Consensus 313 k~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 313 KYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 11112223888889999999888654
No 268
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.91 E-value=0.0024 Score=61.77 Aligned_cols=24 Identities=21% Similarity=0.172 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.++.|.|.+|+||||+|..+....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHc
Confidence 368999999999999999998764
No 269
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.90 E-value=0.022 Score=55.90 Aligned_cols=36 Identities=39% Similarity=0.550 Sum_probs=28.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEE
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 199 (929)
...+|.|.|+.|+||||+|+.++..+. ..+..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~---~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK---LKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEE
Confidence 356999999999999999999999873 234444444
No 270
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.89 E-value=0.054 Score=55.98 Aligned_cols=48 Identities=13% Similarity=0.122 Sum_probs=34.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTE 213 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 213 (929)
..+++.|.|.+|+|||++|.++..... .....++||+... +..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~---~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH---HcCCcEEEEEeeC--CHHHHHHH
Confidence 357999999999999999999766542 2245688888765 34444443
No 271
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.86 E-value=0.015 Score=56.79 Aligned_cols=73 Identities=30% Similarity=0.356 Sum_probs=43.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKA 241 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (929)
..-+.|+|..|+|||.||..+.+.... .. ..+.|+.+ .+++..+ ...... ... ..+.+.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~--~g-~~v~f~~~------~~L~~~l----~~~~~~-~~~----~~~~~~l~- 107 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR--KG-YSVLFITA------SDLLDEL----KQSRSD-GSY----EELLKRLK- 107 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH--TT---EEEEEH------HHHHHHH----HCCHCC-TTH----CHHHHHHH-
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc--CC-cceeEeec------Cceeccc----cccccc-cch----hhhcCccc-
Confidence 457999999999999999999998743 22 33666653 3444443 222111 111 12334443
Q ss_pred cCcEEEEEecCCC
Q 042574 242 KAKFVLILDDMWE 254 (929)
Q Consensus 242 ~~~~LlvlDdv~~ 254 (929)
+-=||||||+-.
T Consensus 108 -~~dlLilDDlG~ 119 (178)
T PF01695_consen 108 -RVDLLILDDLGY 119 (178)
T ss_dssp -TSSCEEEETCTS
T ss_pred -cccEecccccce
Confidence 355888999853
No 272
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.85 E-value=0.13 Score=56.15 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=30.9
Q ss_pred HHHHHHHhcC---CCeeEEEEEcCCCChHHHHHHHHHHHHhh
Q 042574 150 VERIWEDLMG---DKVTKIGVWGMGGIGKTTIMKEINNRLQK 188 (929)
Q Consensus 150 ~~~l~~~l~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 188 (929)
.+.+.+.+.+ +...+|+|.|.=|+||||+.+++.+....
T Consensus 5 a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~ 46 (325)
T PF07693_consen 5 AKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKE 46 (325)
T ss_pred HHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3445555544 45789999999999999999999998843
No 273
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.85 E-value=0.044 Score=55.91 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=32.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCC
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 206 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 206 (929)
..++.|.|.+|+||||+|.+++.... ..-..++|++....+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~---~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETA---GQGKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEECCCCCH
Confidence 57999999999999999999988763 2234578887655543
No 274
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.84 E-value=0.2 Score=54.26 Aligned_cols=91 Identities=14% Similarity=0.217 Sum_probs=52.3
Q ss_pred cCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEE-EeCcccccccCC--cceEecccCCHHHHHHHHHhhhcccCCC
Q 042574 242 KAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVI-TTRSLGVSRSMD--CKEIGVELLSQEEALNLFLDKVRISTSQ 316 (929)
Q Consensus 242 ~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilv-TtR~~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 316 (929)
+++-++|+|+++... ....+...+..-..++.+|+ |++...+..... +..+.+.+++.++..+.+.+. +.
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~~---- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-GV---- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-CC----
Confidence 456688899997642 22222222221234555554 444455443222 334999999999999988764 11
Q ss_pred CCcchHHHHHHHHHhcCCccHHHHHHH
Q 042574 317 IPNLDKEIINSVVEECDGLPLAIVTVA 343 (929)
Q Consensus 317 ~~~~~~~~~~~i~~~c~g~Plai~~~~ 343 (929)
.+ ...++..++|.|..+..+.
T Consensus 206 -~~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 -AD-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred -Ch-----HHHHHHHcCCCHHHHHHHH
Confidence 11 1235778899997655443
No 275
>PRK04132 replication factor C small subunit; Provisional
Probab=95.83 E-value=0.1 Score=62.79 Aligned_cols=151 Identities=9% Similarity=0.086 Sum_probs=88.1
Q ss_pred CCCChHHHHHHHHHHHHhhhcCCC-cEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEE
Q 042574 170 MGGIGKTTIMKEINNRLQKETNKF-NVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLI 248 (929)
Q Consensus 170 ~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~Llv 248 (929)
|.++||||+|..++++.-. +.+ ..++-+++++..++..+.. ++..+....+. ...+.-++|
T Consensus 574 Ph~lGKTT~A~ala~~l~g--~~~~~~~lElNASd~rgid~IR~-iIk~~a~~~~~---------------~~~~~KVvI 635 (846)
T PRK04132 574 PTVLHNTTAALALARELFG--ENWRHNFLELNASDERGINVIRE-KVKEFARTKPI---------------GGASFKIIF 635 (846)
T ss_pred CCcccHHHHHHHHHHhhhc--ccccCeEEEEeCCCcccHHHHHH-HHHHHHhcCCc---------------CCCCCEEEE
Confidence 7889999999999998621 122 2366777777656554443 33322111000 012467999
Q ss_pred EecCCCcC--CccccccCCCCCCCCcEEEEEeCc-ccccccCC--cceEecccCCHHHHHHHHHhhhcccCCCCCcchHH
Q 042574 249 LDDMWEAF--PLEEVGIPEPSEENGCKLVITTRS-LGVSRSMD--CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKE 323 (929)
Q Consensus 249 lDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~-~~v~~~~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~ 323 (929)
+|+++... +...+...+......+++|++|.+ ..+..... +..+++.+++.++....+...+..... .-.++
T Consensus 636 IDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi---~i~~e 712 (846)
T PRK04132 636 LDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL---ELTEE 712 (846)
T ss_pred EECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC---CCCHH
Confidence 99998643 233332222221235566655544 34433222 333999999999998888766543221 11255
Q ss_pred HHHHHHHhcCCccHHHHH
Q 042574 324 IINSVVEECDGLPLAIVT 341 (929)
Q Consensus 324 ~~~~i~~~c~g~Plai~~ 341 (929)
....|++.++|.+-.+..
T Consensus 713 ~L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 713 GLQAILYIAEGDMRRAIN 730 (846)
T ss_pred HHHHHHHHcCCCHHHHHH
Confidence 778899999998854433
No 276
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.79 E-value=0.0084 Score=56.41 Aligned_cols=36 Identities=28% Similarity=0.296 Sum_probs=27.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEE
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT 200 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 200 (929)
..||-|.|.+|+||||||+++...+.. ....+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~---~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFA---RGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHH---TTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEec
Confidence 358999999999999999999999842 223455553
No 277
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.78 E-value=0.063 Score=57.98 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=42.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhh--h-cCCCcEEEEEEECCCCCHHHHHHHHHHHhcCC
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQK--E-TNKFNVVIWVTVSQPLDLIKLQTEIATALKQS 221 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~--~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 221 (929)
.+++-|+|.+|+|||+|+.+++-.... . .+.-..++|++....|++.++.+ +++.++.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 578899999999999999988644311 1 11234689999999899888754 56666543
No 278
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.78 E-value=0.008 Score=60.00 Aligned_cols=24 Identities=42% Similarity=0.603 Sum_probs=22.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
||+|.|++|+||||+|+++...+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999999884
No 279
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.76 E-value=0.061 Score=56.49 Aligned_cols=55 Identities=27% Similarity=0.349 Sum_probs=35.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCH--HHHHHHHHHHhc
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDL--IKLQTEIATALK 219 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~ 219 (929)
..++|.++|++|+||||++.+++..+. . ....+..++.. .+.. .+-+...++..+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~-~--~g~~V~li~~D-~~r~~a~~ql~~~~~~~~ 127 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK-K--QGKSVLLAAGD-TFRAAAIEQLEEWAKRLG 127 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-h--cCCEEEEEeCC-CCCHHHHHHHHHHHHhCC
Confidence 468999999999999999999998773 2 22346666543 2332 233344455544
No 280
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.51 Score=51.54 Aligned_cols=167 Identities=15% Similarity=0.174 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhcCCC---------eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 147 KKVVERIWEDLMGDK---------VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 147 ~~~~~~l~~~l~~~~---------~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
++.++.+..++.+.+ -|--.++||+|.||||+..++++.+ .|+.. -...+..
T Consensus 211 ~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L-----~ydIy-dLeLt~v------------- 271 (457)
T KOG0743|consen 211 ERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL-----NYDIY-DLELTEV------------- 271 (457)
T ss_pred HHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc-----CCceE-Eeeeccc-------------
Confidence 344555556665432 2456789999999999999999987 24321 1111111
Q ss_pred hcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCCc-----------cc---------cccCCC---CCCCCcEE
Q 042574 218 LKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFPL-----------EE---------VGIPEP---SEENGCKL 274 (929)
Q Consensus 218 l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~-----------~~---------l~~~~~---~~~~gs~i 274 (929)
.+..+ ...|... ...+-+||+.|++-..++ +. +...+. ....+-||
T Consensus 272 --------~~n~d-Lr~LL~~--t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERI 340 (457)
T KOG0743|consen 272 --------KLDSD-LRHLLLA--TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERI 340 (457)
T ss_pred --------cCcHH-HHHHHHh--CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceE
Confidence 11111 2222222 245778888888643111 10 111111 11112355
Q ss_pred -EEEeCcccccc--cC---Ccce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHHh-hh
Q 042574 275 -VITTRSLGVSR--SM---DCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVAS-CM 346 (929)
Q Consensus 275 -lvTtR~~~v~~--~~---~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~-~L 346 (929)
|+||-..+-.. .+ .... +.|.--+.+.-..||....+.+.. + .+..+|.+...|.-+.=..++. +|
T Consensus 341 ivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~--h----~L~~eie~l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 341 IVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEED--H----RLFDEIERLIEETEVTPAQVAEELM 414 (457)
T ss_pred EEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCC--c----chhHHHHHHhhcCccCHHHHHHHHh
Confidence 55776543221 11 1122 889999999999999998877531 2 2344444444444444344444 44
Q ss_pred cCC
Q 042574 347 RGV 349 (929)
Q Consensus 347 ~~~ 349 (929)
..+
T Consensus 415 ~~~ 417 (457)
T KOG0743|consen 415 KNK 417 (457)
T ss_pred hcc
Confidence 444
No 281
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.76 E-value=0.037 Score=60.44 Aligned_cols=41 Identities=22% Similarity=0.389 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhc-CCC-eeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 147 KKVVERIWEDLM-GDK-VTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 147 ~~~~~~l~~~l~-~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
+....++..+.. .++ ...+.++|++|+||||+|..+++.+-
T Consensus 7 ~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 7 QEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred hhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 455566666665 343 44599999999999999999999873
No 282
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.74 E-value=0.034 Score=63.57 Aligned_cols=49 Identities=33% Similarity=0.417 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcC-----CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEE
Q 042574 147 KKVVERIWEDLMG-----DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT 200 (929)
Q Consensus 147 ~~~~~~l~~~l~~-----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 200 (929)
.+.++++..||.+ ...+++.+.|++|+||||.++.++++. .|+.+-|..
T Consensus 25 kkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~n 78 (519)
T PF03215_consen 25 KKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWIN 78 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecC
Confidence 4556667777653 235799999999999999999999886 466677864
No 283
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.72 E-value=0.0086 Score=55.15 Aligned_cols=22 Identities=59% Similarity=0.904 Sum_probs=20.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 042574 165 IGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 165 v~I~G~gGiGKTtLa~~v~~~~ 186 (929)
|+|.|++|+||||+|+.+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998874
No 284
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.68 E-value=0.055 Score=58.32 Aligned_cols=88 Identities=16% Similarity=0.174 Sum_probs=51.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCC-CCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LDLIKLQTEIATALKQSLPENEDKVRRAGRLSEML 239 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 239 (929)
..++++|+|+.|+||||++..++.... .. ...+.+|++... ....+.++..++.++.+.....+...... ....+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~-~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~-al~~l 280 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL-KQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEE-AVQYM 280 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-Hc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHH-HHHHH
Confidence 357999999999999999999988763 22 234666765432 22344556666666654332233333322 22333
Q ss_pred H-hcCcEEEEEecC
Q 042574 240 K-AKAKFVLILDDM 252 (929)
Q Consensus 240 ~-~~~~~LlvlDdv 252 (929)
. .+..=++++|-.
T Consensus 281 ~~~~~~D~VLIDTA 294 (407)
T PRK12726 281 TYVNCVDHILIDTV 294 (407)
T ss_pred HhcCCCCEEEEECC
Confidence 2 123456777776
No 285
>PRK14974 cell division protein FtsY; Provisional
Probab=95.68 E-value=0.1 Score=56.22 Aligned_cols=90 Identities=26% Similarity=0.263 Sum_probs=49.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCC--HHHHHHHHHHHhcCCCCC---CccHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD--LIKLQTEIATALKQSLPE---NEDKVRRAGRL 235 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l 235 (929)
...+|.++|++|+||||++.+++..+. . ..+ .++.+. .+.+. ..+.++..+..++.+... ..+....+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~-~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~a 214 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-K-NGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDA 214 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-H-cCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHH
Confidence 468999999999999999999988763 2 233 344443 23332 233455566666654321 11222222222
Q ss_pred HHHHHhcCcEEEEEecCCC
Q 042574 236 SEMLKAKAKFVLILDDMWE 254 (929)
Q Consensus 236 ~~~l~~~~~~LlvlDdv~~ 254 (929)
.+.......=++++|-.-.
T Consensus 215 i~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 215 IEHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHHhCCCCEEEEECCCc
Confidence 2222222233888888743
No 286
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.089 Score=58.90 Aligned_cols=152 Identities=18% Similarity=0.246 Sum_probs=85.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLK 240 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 240 (929)
.+.-|.+||++|.|||-||++|+|.. +-.| ++|-.. +++..- ....+..++.+.++-+
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGP----ELlNkY----------VGESErAVR~vFqRAR 601 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGP----ELLNKY----------VGESERAVRQVFQRAR 601 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCH----HHHHHH----------hhhHHHHHHHHHHHhh
Confidence 36779999999999999999999986 2334 333221 121111 0112333444555555
Q ss_pred hcCcEEEEEecCCCc-------CC------ccccccCCCC--CCCCcEEEEEeCccccc-cc-CCcc---e-EecccCCH
Q 042574 241 AKAKFVLILDDMWEA-------FP------LEEVGIPEPS--EENGCKLVITTRSLGVS-RS-MDCK---E-IGVELLSQ 299 (929)
Q Consensus 241 ~~~~~LlvlDdv~~~-------~~------~~~l~~~~~~--~~~gs~ilvTtR~~~v~-~~-~~~~---~-~~l~~L~~ 299 (929)
..-+++|+||.++.. .. ...+...+.. ...|.-||-.|...++- .. +... . +-++.-+.
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 678999999999642 11 1122222322 23455566555544432 11 1111 2 66777788
Q ss_pred HHHHHHHHhhhcc--cCCCCCcchHHHHHHHHHhcCCcc
Q 042574 300 EEALNLFLDKVRI--STSQIPNLDKEIINSVVEECDGLP 336 (929)
Q Consensus 300 ~~~~~Lf~~~~~~--~~~~~~~~~~~~~~~i~~~c~g~P 336 (929)
+|-..+++..... ..-...-++.++|+. .+|.|.-
T Consensus 682 ~eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 682 EERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 8888999887663 222344456666653 3555554
No 287
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.64 E-value=0.0098 Score=47.79 Aligned_cols=23 Identities=35% Similarity=0.578 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+|+|.|..|+||||+|+.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 288
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.64 E-value=0.025 Score=55.60 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+++|.|+.|.|||||++.++...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4689999999999999999998865
No 289
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.63 E-value=0.04 Score=60.44 Aligned_cols=83 Identities=16% Similarity=0.141 Sum_probs=44.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCC--HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD--LIKLQTEIATALKQSLPENEDKVRRAGRLSEML 239 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 239 (929)
..++.++|++|+||||+|.+++..... ...+ .+..++. +.+. ....++..++.++.+.... .....+...+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~-~~G~-~V~Lit~-Dt~R~aA~eQLk~yAe~lgvp~~~~----~~~~~l~~~l 295 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFL-HMGK-SVSLYTT-DNYRIAAIEQLKRYADTMGMPFYPV----KDIKKFKETL 295 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-hcCC-eEEEecc-cchhhhHHHHHHHHHHhcCCCeeeh----HHHHHHHHHH
Confidence 468999999999999999999876522 2222 3344433 2222 2333444445545433211 1122344444
Q ss_pred HhcCcEEEEEec
Q 042574 240 KAKAKFVLILDD 251 (929)
Q Consensus 240 ~~~~~~LlvlDd 251 (929)
.....=++|+|-
T Consensus 296 ~~~~~D~VLIDT 307 (432)
T PRK12724 296 ARDGSELILIDT 307 (432)
T ss_pred HhCCCCEEEEeC
Confidence 333345577884
No 290
>PTZ00301 uridine kinase; Provisional
Probab=95.63 E-value=0.015 Score=58.32 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=23.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
..+|+|.|++|+||||||+.+...+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 36899999999999999999988763
No 291
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.62 E-value=0.024 Score=55.27 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.|.|.|++|+||||+|+.+.+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999985
No 292
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.17 Score=50.06 Aligned_cols=148 Identities=14% Similarity=0.167 Sum_probs=81.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLK 240 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 240 (929)
.++-|.++|++|.|||-||++|+++. ...|+.||.. ++.+..+. ........+.-.-+
T Consensus 180 QPKGvlLygppgtGktLlaraVahht--------~c~firvsgs----elvqk~ig----------egsrmvrelfvmar 237 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSGS----ELVQKYIG----------EGSRMVRELFVMAR 237 (404)
T ss_pred CCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEechH----HHHHHHhh----------hhHHHHHHHHHHHH
Confidence 46789999999999999999999864 2455666543 22222111 11223333333323
Q ss_pred hcCcEEEEEecCCCcC----------C------ccccccCCCC--CCCCcEEEEEeCccccccc--C---Ccce-Eeccc
Q 042574 241 AKAKFVLILDDMWEAF----------P------LEEVGIPEPS--EENGCKLVITTRSLGVSRS--M---DCKE-IGVEL 296 (929)
Q Consensus 241 ~~~~~LlvlDdv~~~~----------~------~~~l~~~~~~--~~~gs~ilvTtR~~~v~~~--~---~~~~-~~l~~ 296 (929)
..-+-++++|.++.-. + .-++...+.. ..++-|||..|..-++... . .... ++.++
T Consensus 238 ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~ 317 (404)
T KOG0728|consen 238 EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPP 317 (404)
T ss_pred hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCC
Confidence 4568889999986410 0 0012222221 2356678877765444321 1 1122 78888
Q ss_pred CCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHH
Q 042574 297 LSQEEALNLFLDKVRISTSQIPNLDKEIINSVVE 330 (929)
Q Consensus 297 L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~ 330 (929)
-+++.-.++++-+...-.-...-++..+|+++.-
T Consensus 318 p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~g 351 (404)
T KOG0728|consen 318 PNEEARLDILKIHSRKMNLTRGINLRKIAEKMPG 351 (404)
T ss_pred CCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCC
Confidence 8888777787665433222223345555554433
No 293
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=0.0014 Score=65.57 Aligned_cols=77 Identities=27% Similarity=0.298 Sum_probs=46.9
Q ss_pred CcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceeecccccccccCc---cccccCCCCEE
Q 042574 521 KILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLRWCRRLKRVP---SVAKLLALQYL 597 (929)
Q Consensus 521 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~---~~~~l~~L~~L 597 (929)
.+.+.|++.+|. +..+. +..+|+.|++|.|+-|+|+++. .+..|++|+.|.|+.|. +..+. -+.++++|++|
T Consensus 19 ~~vkKLNcwg~~-L~DIs--ic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCG-LDDIS--ICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCC-ccHHH--HHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhH
Confidence 345555666665 44443 3457788888888888777763 46677777777777652 23332 24555666666
Q ss_pred EccCC
Q 042574 598 DLERT 602 (929)
Q Consensus 598 ~l~~~ 602 (929)
.|..|
T Consensus 94 WL~EN 98 (388)
T KOG2123|consen 94 WLDEN 98 (388)
T ss_pred hhccC
Confidence 66555
No 294
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.60 E-value=0.056 Score=51.79 Aligned_cols=117 Identities=20% Similarity=0.074 Sum_probs=63.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEE---EECCCCCHHHHHHHHHH---HhcCC--CC--CCccHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV---TVSQPLDLIKLQTEIAT---ALKQS--LP--ENEDKVRR 231 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv---~~s~~~~~~~~~~~i~~---~l~~~--~~--~~~~~~~~ 231 (929)
...|-|++..|.||||.|..++-+.. ...+ .+..+ .-.........+....- +.+.. +. ........
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~-~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRAL--GHGK-KVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHH--HCCC-eEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHH
Confidence 36888999999999999999888763 2223 34333 33323344444433200 01111 10 11111111
Q ss_pred HH----HHHHHHHhcCcEEEEEecCCC-----cCCccccccCCCCCCCCcEEEEEeCcc
Q 042574 232 AG----RLSEMLKAKAKFVLILDDMWE-----AFPLEEVGIPEPSEENGCKLVITTRSL 281 (929)
Q Consensus 232 ~~----~l~~~l~~~~~~LlvlDdv~~-----~~~~~~l~~~~~~~~~gs~ilvTtR~~ 281 (929)
+. ...+.+..++-=|+|||.+-. ..+.+++...+.....+.-||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 22 223344456678999999853 223334443344445677999999984
No 295
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.60 E-value=0.081 Score=55.08 Aligned_cols=48 Identities=17% Similarity=0.203 Sum_probs=38.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQT 212 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 212 (929)
.+++=|+|+.|+||||+|.+++-... .....++|++....+++..+.+
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq---~~g~~a~fIDtE~~l~p~r~~~ 107 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQ---KPGGKAAFIDTEHALDPERAKQ 107 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhh---cCCCeEEEEeCCCCCCHHHHHH
Confidence 57999999999999999999877653 2334789999999898877643
No 296
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.58 E-value=0.078 Score=57.35 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=41.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhh---cCCCcEEEEEEECCCCCHHHHHHHHHHHhc
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKE---TNKFNVVIWVTVSQPLDLIKLQTEIATALK 219 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 219 (929)
.+++-|+|.+|+||||+|.+++...... ...-..++||+....++..++. ++++.++
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 5789999999999999999998765211 0011379999998888877654 3444444
No 297
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.58 E-value=0.014 Score=60.79 Aligned_cols=117 Identities=15% Similarity=0.194 Sum_probs=63.5
Q ss_pred CCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCC-------CCccHHHH
Q 042574 159 GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLP-------ENEDKVRR 231 (929)
Q Consensus 159 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------~~~~~~~~ 231 (929)
.++..-++|+|+.|.|||||++.++.... .....+++.- ......+-..+++.....-.. +..+....
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~~----~~~G~i~~~g-~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k 182 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARILS----TGISQLGLRG-KKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPK 182 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCccC----CCCceEEECC-EEeecchhHHHHHHHhcccccccccccccccccchH
Confidence 44567899999999999999999988762 2222333321 000000111233322211100 01111222
Q ss_pred HHHHHHHHHhcCcEEEEEecCCCcCCccccccCCCCCCCCcEEEEEeCcccc
Q 042574 232 AGRLSEMLKAKAKFVLILDDMWEAFPLEEVGIPEPSEENGCKLVITTRSLGV 283 (929)
Q Consensus 232 ~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v 283 (929)
...+...++...+=++++|.+-..+.+..+...+ ..|..||+||-+..+
T Consensus 183 ~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 183 AEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHH
Confidence 3344444444578899999987655454444333 247789999976544
No 298
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.58 E-value=0.056 Score=58.45 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=42.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhh--hc-CCCcEEEEEEECCCCCHHHHHHHHHHHhcC
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQK--ET-NKFNVVIWVTVSQPLDLIKLQTEIATALKQ 220 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~--~~-~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 220 (929)
..++-|+|.+|+|||+||..++-.... .. ..-..++|++....++..++. +|++.++.
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 578999999999999999988754311 11 122369999999988887764 55666654
No 299
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.57 E-value=0.088 Score=53.95 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=32.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEI 214 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 214 (929)
..++.|.|.+|+||||+|.+++..... . . ..+++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~-~-g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQ-N-G-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh-C-C-CcEEEEeCCC--CHHHHHHHH
Confidence 469999999999999998777665522 2 2 3467776333 445555544
No 300
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.55 E-value=0.012 Score=59.47 Aligned_cols=27 Identities=41% Similarity=0.528 Sum_probs=24.3
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 160 DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 160 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
....+|+|.|.+|+||||||+.+...+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 301
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.00085 Score=67.00 Aligned_cols=97 Identities=25% Similarity=0.309 Sum_probs=75.5
Q ss_pred ccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccC--ccccccccccee
Q 042574 497 ENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLP--SSVSNLTNLRSL 574 (929)
Q Consensus 497 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L 574 (929)
.+++.|+..++.+.+| .+..+++.|.+|.|+-|. +..+.+ +..++.|+.|+|..|.|..+- ..+.++++|+.|
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNk-IssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNK-ISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccc-cccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 4678899999998887 456689999999999997 666554 578999999999999988663 456889999999
Q ss_pred ecccccccccCc------cccccCCCCEEE
Q 042574 575 LLRWCRRLKRVP------SVAKLLALQYLD 598 (929)
Q Consensus 575 ~l~~~~~~~~~~------~~~~l~~L~~L~ 598 (929)
=|..|.-...-+ -+.-|++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 998876555443 155677777765
No 302
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.53 E-value=0.054 Score=58.23 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=40.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhh---hcCCCcEEEEEEECCCCCHHHHHHHHHHHhcC
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQK---ETNKFNVVIWVTVSQPLDLIKLQTEIATALKQ 220 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 220 (929)
..++.|+|.+|+||||||..++..... ....-..++|++....++..++ .++++.++.
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 579999999999999999988764311 1111236799998887777764 345555443
No 303
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.53 E-value=0.064 Score=58.97 Aligned_cols=90 Identities=14% Similarity=0.101 Sum_probs=52.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhc-CCCcEEEEEEECCC-CCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKET-NKFNVVIWVTVSQP-LDLIKLQTEIATALKQSLPENEDKVRRAGRLSEM 238 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 238 (929)
..++|.++|+.|+||||.+.+++..+.... ..-..+..+++... ......++..++.++.+.....+.......+ ..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L-~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEI-TQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHH-HH
Confidence 357999999999999999999988763221 12334556655432 1223335566666666543333322222222 22
Q ss_pred HHhcCcEEEEEecCC
Q 042574 239 LKAKAKFVLILDDMW 253 (929)
Q Consensus 239 l~~~~~~LlvlDdv~ 253 (929)
+ .+.-++++|..-
T Consensus 252 ~--~~~DlVLIDTaG 264 (388)
T PRK12723 252 S--KDFDLVLVDTIG 264 (388)
T ss_pred h--CCCCEEEEcCCC
Confidence 2 345678888873
No 304
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.52 E-value=0.072 Score=54.99 Aligned_cols=47 Identities=17% Similarity=0.109 Sum_probs=34.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTE 213 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 213 (929)
.+++.|+|.+|+|||+||.++...... .-..++|++..+. ..++.+.
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~---~g~~~~y~~~e~~--~~~~~~~ 71 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK---QGKKVYVITTENT--SKSYLKQ 71 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh---CCCEEEEEEcCCC--HHHHHHH
Confidence 579999999999999999999765422 3456889988654 3444443
No 305
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.028 Score=63.78 Aligned_cols=72 Identities=28% Similarity=0.274 Sum_probs=48.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCC--CCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP--LDLIKLQTEIATALKQSLPENEDKVRRAGRLSEML 239 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 239 (929)
..-|.|.|+.|+|||+||+++++.+. +....++.+|+++.- .....+++.+-.. +...+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~--k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~v-----------------fse~~ 491 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS--KDLIAHVEIVSCSTLDGSSLEKIQKFLNNV-----------------FSEAL 491 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc--cccceEEEEEechhccchhHHHHHHHHHHH-----------------HHHHH
Confidence 45789999999999999999999884 456666777877653 2233333322211 12222
Q ss_pred HhcCcEEEEEecCC
Q 042574 240 KAKAKFVLILDDMW 253 (929)
Q Consensus 240 ~~~~~~LlvlDdv~ 253 (929)
.-.+-++||||++
T Consensus 492 -~~~PSiIvLDdld 504 (952)
T KOG0735|consen 492 -WYAPSIIVLDDLD 504 (952)
T ss_pred -hhCCcEEEEcchh
Confidence 2468999999986
No 306
>PRK06851 hypothetical protein; Provisional
Probab=95.51 E-value=0.25 Score=53.70 Aligned_cols=44 Identities=23% Similarity=0.347 Sum_probs=32.6
Q ss_pred CCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCC
Q 042574 159 GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 204 (929)
Q Consensus 159 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 204 (929)
.+--+++.|.|++|+|||||+++++.... ...++..++-|.+++
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~--~~G~~v~~~hC~~dP 254 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAE--ERGFDVEVYHCGFDP 254 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHH--hCCCeEEEEeCCCCC
Confidence 44458899999999999999999999873 345555555544443
No 307
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.50 E-value=0.06 Score=56.35 Aligned_cols=40 Identities=25% Similarity=0.426 Sum_probs=31.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCC
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 204 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 204 (929)
.+++.|.|.+|+||||+|.+++..... .-..++|++....
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~---~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQAS---RGNPVLFVTVESP 75 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh---CCCcEEEEEecCC
Confidence 579999999999999999998776422 2346788887643
No 308
>PTZ00035 Rad51 protein; Provisional
Probab=95.50 E-value=0.089 Score=57.08 Aligned_cols=58 Identities=14% Similarity=0.155 Sum_probs=39.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhh---hcCCCcEEEEEEECCCCCHHHHHHHHHHHhcC
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQK---ETNKFNVVIWVTVSQPLDLIKLQTEIATALKQ 220 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~---~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~ 220 (929)
..++.|+|.+|+|||||+..++-.... ....-..++|++....++..++ .++++.++.
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 579999999999999999988755421 0112235779988777777664 344555443
No 309
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.47 E-value=0.028 Score=61.33 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+-|.++|++|+|||++|+.++...
T Consensus 47 p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 47 PKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999986
No 310
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.46 E-value=0.014 Score=57.65 Aligned_cols=26 Identities=50% Similarity=0.723 Sum_probs=24.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+.+|||.|.+|+||||+|+.+...+
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999999987
No 311
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.46 E-value=0.12 Score=53.72 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=40.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhh---cCCCcEEEEEEECCCCCHHHHHHHHHHHhc
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKE---TNKFNVVIWVTVSQPLDLIKLQTEIATALK 219 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 219 (929)
..+.=|+|.+|+|||.||.+++-..... .+.-..++|++-...++..++. +|++..+
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 4689999999999999999887553211 1223469999988889888775 4665543
No 312
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.46 E-value=0.13 Score=55.67 Aligned_cols=86 Identities=17% Similarity=0.192 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCC----CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCC-CCHHHHHHHHHHHhcCCC
Q 042574 148 KVVERIWEDLMGD----KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LDLIKLQTEIATALKQSL 222 (929)
Q Consensus 148 ~~~~~l~~~l~~~----~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~ 222 (929)
+....+..++.++ ..++|.++|+.|+||||-..+++.++.. ...-..+..++...- -...+.++.-++-++.+.
T Consensus 185 ~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~-~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~ 263 (407)
T COG1419 185 EKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVM-LKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL 263 (407)
T ss_pred HHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHh-hccCcceEEEEeccchhhHHHHHHHHHHHhCCce
Confidence 3445555555544 3689999999999997655555555521 223345667765331 234455666677777766
Q ss_pred CCCccHHHHHHH
Q 042574 223 PENEDKVRRAGR 234 (929)
Q Consensus 223 ~~~~~~~~~~~~ 234 (929)
....+..+....
T Consensus 264 ~vv~~~~el~~a 275 (407)
T COG1419 264 EVVYSPKELAEA 275 (407)
T ss_pred EEecCHHHHHHH
Confidence 544444444433
No 313
>PRK08233 hypothetical protein; Provisional
Probab=95.44 E-value=0.011 Score=58.33 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|+|.|++|+||||||+.++..+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999999876
No 314
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.43 E-value=0.018 Score=64.94 Aligned_cols=46 Identities=17% Similarity=0.328 Sum_probs=38.9
Q ss_pred ccccccchHHHHHHHHHHh------cCCCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDL------MGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l------~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+++|. ++.++++++.+ .+..-+++.++|++|+||||||+.+++-.
T Consensus 76 ~d~yGl--ee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 76 EEFYGM--EEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred hcccCc--HHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 457887 78888888887 34456899999999999999999999977
No 315
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.41 E-value=0.069 Score=54.25 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+|+|.|++|+||||+|+.+...+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 316
>PRK07667 uridine kinase; Provisional
Probab=95.40 E-value=0.021 Score=56.82 Aligned_cols=36 Identities=17% Similarity=0.347 Sum_probs=27.9
Q ss_pred HHHHHhcC--CCeeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 152 RIWEDLMG--DKVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 152 ~l~~~l~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
.+.+++.. +...+|+|.|.+|+||||+|+.+.....
T Consensus 5 ~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 5 ELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred HHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34444432 3357999999999999999999999873
No 317
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.056 Score=57.91 Aligned_cols=86 Identities=21% Similarity=0.207 Sum_probs=57.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCC-ccHHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPEN-EDKVRRAGRLSEMLK 240 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~l~ 240 (929)
-++|.|-|-+|+|||||..+++.+.... . .+.||+-.+...-. +--++.++.....- .-.+...+.+.+.+.
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~---~-~vLYVsGEES~~Qi---klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKR---G-KVLYVSGEESLQQI---KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhc---C-cEEEEeCCcCHHHH---HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 4799999999999999999999998422 2 68888755543222 22355565433211 112334456666676
Q ss_pred hcCcEEEEEecCCC
Q 042574 241 AKAKFVLILDDMWE 254 (929)
Q Consensus 241 ~~~~~LlvlDdv~~ 254 (929)
+.++-++|+|-+..
T Consensus 166 ~~~p~lvVIDSIQT 179 (456)
T COG1066 166 QEKPDLVVIDSIQT 179 (456)
T ss_pred hcCCCEEEEeccce
Confidence 77899999999854
No 318
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.39 E-value=0.041 Score=54.16 Aligned_cols=116 Identities=20% Similarity=0.224 Sum_probs=60.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEE---ECCCCCHHHHHH------HHHHHhcCCC------CCCc
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT---VSQPLDLIKLQT------EIATALKQSL------PENE 226 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---~s~~~~~~~~~~------~i~~~l~~~~------~~~~ 226 (929)
-.+++|+|..|.|||||++.++.... .....+++. +. ..+...... ++++.++... ..-.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~----~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK----PSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC----CCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 46899999999999999999988642 222333332 22 112222211 1344443321 1111
Q ss_pred cHHHHHHHHHHHHHhcCcEEEEEecCCCcCCc---cccccCCCCC-CC-CcEEEEEeCcccc
Q 042574 227 DKVRRAGRLSEMLKAKAKFVLILDDMWEAFPL---EEVGIPEPSE-EN-GCKLVITTRSLGV 283 (929)
Q Consensus 227 ~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~---~~l~~~~~~~-~~-gs~ilvTtR~~~v 283 (929)
..+.+...+.+.+. ..+-++++|+--..-+. +.+...+... .. |..||++|.+.+.
T Consensus 100 ~G~~qrl~laral~-~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 100 GGERQRVLLARALA-QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHHHHh-cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 23334445556665 46788999997543331 1221111111 22 5678888877554
No 319
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.38 E-value=0.055 Score=54.30 Aligned_cols=87 Identities=22% Similarity=0.422 Sum_probs=53.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCC-CHHHHHHHHHHHhc-------CCCCCCccHHH---
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQTEIATALK-------QSLPENEDKVR--- 230 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~-------~~~~~~~~~~~--- 230 (929)
-..++|.|.+|+|||+|+.++.+.. .-+.++++.+++.. .+.++.+++...-. ....++.....
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhcc-----cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 3579999999999999999999875 23456888888764 45555555533210 01111111111
Q ss_pred --HHHHHHHHHH-hcCcEEEEEecCC
Q 042574 231 --RAGRLSEMLK-AKAKFVLILDDMW 253 (929)
Q Consensus 231 --~~~~l~~~l~-~~~~~LlvlDdv~ 253 (929)
.+..+.+++. +++.+|+++||+.
T Consensus 90 ~~~a~t~AEyfrd~G~dVlli~Dslt 115 (215)
T PF00006_consen 90 PYTALTIAEYFRDQGKDVLLIIDSLT 115 (215)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEETHH
T ss_pred hccchhhhHHHhhcCCceeehhhhhH
Confidence 1122233333 5899999999984
No 320
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.38 E-value=0.038 Score=51.73 Aligned_cols=42 Identities=29% Similarity=0.295 Sum_probs=32.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHH
Q 042574 165 IGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQT 212 (929)
Q Consensus 165 v~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 212 (929)
|.++|++|+|||+||+.+++... ....-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~------~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG------RPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT------CEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhh------cceEEEEecccccccccee
Confidence 67999999999999999999861 2245567888777776653
No 321
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.38 E-value=0.049 Score=51.93 Aligned_cols=123 Identities=18% Similarity=0.189 Sum_probs=69.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEE---EC------------------CCCC--------------
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT---VS------------------QPLD-------------- 206 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~---~s------------------~~~~-------------- 206 (929)
...+.++|++|.|||||.+.+|....... ..+|+. ++ |++.
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt~----G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPTR----GKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCCC----ceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 46899999999999999999999863322 233331 11 1110
Q ss_pred -------HHHHHH---HHHHHhcCC-----CCCC-ccHHHHHHHHHHHHHhcCcEEEEEecC----CCcCCcccc--ccC
Q 042574 207 -------LIKLQT---EIATALKQS-----LPEN-EDKVRRAGRLSEMLKAKAKFVLILDDM----WEAFPLEEV--GIP 264 (929)
Q Consensus 207 -------~~~~~~---~i~~~l~~~-----~~~~-~~~~~~~~~l~~~l~~~~~~LlvlDdv----~~~~~~~~l--~~~ 264 (929)
..++.+ +.++..+.. .+.+ ...+++...+.+.+- +++-+|+-|.= +....|+-+ ...
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV-~~P~vLlADEPTGNLDp~~s~~im~lfee 182 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIV-NQPAVLLADEPTGNLDPDLSWEIMRLFEE 182 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHc-cCCCeEeecCCCCCCChHHHHHHHHHHHH
Confidence 112222 222332221 1111 123344445666664 57888888874 222333322 222
Q ss_pred CCCCCCCcEEEEEeCcccccccCCcce
Q 042574 265 EPSEENGCKLVITTRSLGVSRSMDCKE 291 (929)
Q Consensus 265 ~~~~~~gs~ilvTtR~~~v~~~~~~~~ 291 (929)
+ +..|..||++|-+.++...+....
T Consensus 183 i--nr~GtTVl~ATHd~~lv~~~~~rv 207 (223)
T COG2884 183 I--NRLGTTVLMATHDLELVNRMRHRV 207 (223)
T ss_pred H--hhcCcEEEEEeccHHHHHhccCcE
Confidence 2 257899999999988877665444
No 322
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.36 E-value=0.027 Score=55.16 Aligned_cols=119 Identities=20% Similarity=0.224 Sum_probs=65.0
Q ss_pred HHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCC-------CC
Q 042574 153 IWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLP-------EN 225 (929)
Q Consensus 153 l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------~~ 225 (929)
++..+-.....-..|.|++|+|||||.+.++.-.+.....|-..--+-+... .+|+..+..... +.
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDer-------sEIag~~~gvpq~~~g~R~dV 200 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDER-------SEIAGCLNGVPQHGRGRRMDV 200 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEecc-------chhhccccCCchhhhhhhhhh
Confidence 5555555555557899999999999999998877544444532111111111 122221111000 00
Q ss_pred ccHHHHHHHHHHHHHhcCcEEEEEecCCCcCCccccccCCCCCCCCcEEEEEeCcc
Q 042574 226 EDKVRRAGRLSEMLKAKAKFVLILDDMWEAFPLEEVGIPEPSEENGCKLVITTRSL 281 (929)
Q Consensus 226 ~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~ 281 (929)
.+..-....+...+++-.+=++|.|.+-..++-..+...+ ..|.+++.|.--.
T Consensus 201 ld~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~ 253 (308)
T COG3854 201 LDPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGN 253 (308)
T ss_pred cccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccc
Confidence 1111222334444455568899999997766544443333 4677888776543
No 323
>PRK06762 hypothetical protein; Provisional
Probab=95.36 E-value=0.015 Score=56.51 Aligned_cols=25 Identities=48% Similarity=0.629 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|.|.|++|+||||+|+.+....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 324
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.35 E-value=0.058 Score=59.24 Aligned_cols=86 Identities=20% Similarity=0.183 Sum_probs=50.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCc-cHHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENE-DKVRRAGRLSEMLK 240 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~ 240 (929)
..++.|.|.+|+|||||+.+++..... ....++|++..+. ..++ ..-+..++.....-. ........+.+.+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~---~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAK---RGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 479999999999999999999887632 2246788876443 3322 222344443221100 00111233444444
Q ss_pred hcCcEEEEEecCC
Q 042574 241 AKAKFVLILDDMW 253 (929)
Q Consensus 241 ~~~~~LlvlDdv~ 253 (929)
..+.-++|+|.+.
T Consensus 156 ~~~~~lVVIDSIq 168 (372)
T cd01121 156 ELKPDLVIIDSIQ 168 (372)
T ss_pred hcCCcEEEEcchH
Confidence 4567788888874
No 325
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.34 E-value=0.016 Score=58.53 Aligned_cols=27 Identities=41% Similarity=0.551 Sum_probs=24.0
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 160 DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 160 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+...+|+|+|++|+||||||+.++...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345799999999999999999999876
No 326
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.33 E-value=0.032 Score=55.10 Aligned_cols=43 Identities=35% Similarity=0.482 Sum_probs=31.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLI 208 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 208 (929)
.|+|+|-||+||||+|..+...... ++.| .+.=|+...++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~-~~~~-~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLS-KGGY-NVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHh-cCCc-eEEEEeCCCCCChH
Confidence 6899999999999999997776633 2323 35666666666543
No 327
>PRK06217 hypothetical protein; Validated
Probab=95.32 E-value=0.025 Score=55.89 Aligned_cols=23 Identities=35% Similarity=0.562 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.|.|.|++|+||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999876
No 328
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.31 E-value=0.1 Score=58.22 Aligned_cols=91 Identities=23% Similarity=0.170 Sum_probs=49.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCC-CCHHHHHHHHHHHhcCCCCC---CccHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LDLIKLQTEIATALKQSLPE---NEDKVRRAGRLS 236 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 236 (929)
.+.++.++|.+|+||||.|.+++..+... ..+ .+.-|++... +...+.++..+...+.+... ..+.........
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~-~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKK-QGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh-CCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 36799999999999999999998876211 222 3455544321 22334444555655544221 122333333333
Q ss_pred HHHHhcCcEEEEEecCC
Q 042574 237 EMLKAKAKFVLILDDMW 253 (929)
Q Consensus 237 ~~l~~~~~~LlvlDdv~ 253 (929)
+.......=++|+|-.-
T Consensus 176 ~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 176 EYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHhcCCCEEEEeCCC
Confidence 33323333367777653
No 329
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.28 E-value=0.068 Score=54.49 Aligned_cols=123 Identities=17% Similarity=0.147 Sum_probs=66.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECC-----CCCHHHHHHHHHHHhcCCC------CCCccH-H
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-----PLDLIKLQTEIATALKQSL------PENEDK-V 229 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-----~~~~~~~~~~i~~~l~~~~------~~~~~~-~ 229 (929)
..+++|+|.+|.||||+++.+..-.. .... .++..-.+ .....+-..+++..++... +.+-+. .
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~---pt~G-~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEE---PTSG-EILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcC---CCCc-eEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 46899999999999999999987652 2222 23332111 1122333455566655321 112222 2
Q ss_pred HHHHHHHHHHHhcCcEEEEEecCCCcCCc------cccccCCCCCCCCcEEEEEeCcccccccCCcc
Q 042574 230 RRAGRLSEMLKAKAKFVLILDDMWEAFPL------EEVGIPEPSEENGCKLVITTRSLGVSRSMDCK 290 (929)
Q Consensus 230 ~~~~~l~~~l~~~~~~LlvlDdv~~~~~~------~~l~~~~~~~~~gs~ilvTtR~~~v~~~~~~~ 290 (929)
.+...+.+.+ .-++-++|.|.--...+. -.+...+. ...|-..++.|-+-.++..+...
T Consensus 115 rQRi~IARAL-al~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~isdr 179 (268)
T COG4608 115 RQRIGIARAL-ALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYISDR 179 (268)
T ss_pred hhhHHHHHHH-hhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhhccc
Confidence 2233344554 467999999997543321 11111111 13456677777777776655443
No 330
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.27 E-value=0.19 Score=54.26 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...+.++|+.|+||||+|+.++...
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998876
No 331
>PRK04328 hypothetical protein; Provisional
Probab=95.27 E-value=0.072 Score=55.37 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=31.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCC
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 204 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 204 (929)
..+++.|.|.+|+|||+||.++..... .....++|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~---~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL---QMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEEeeCC
Confidence 357999999999999999999876642 22455788887664
No 332
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.26 E-value=0.016 Score=54.64 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+|.++|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998765
No 333
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.25 E-value=0.033 Score=54.29 Aligned_cols=47 Identities=26% Similarity=0.283 Sum_probs=33.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEI 214 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 214 (929)
-.+|+|-||-|+||||||+.++++.. | .+++-.+.+++=+..+.+++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~-----~-~~~~E~vednp~L~~FY~d~ 50 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG-----F-KVFYELVEDNPFLDLFYEDP 50 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC-----C-ceeeecccCChHHHHHHHhH
Confidence 36899999999999999999999872 2 24445555654444554444
No 334
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.24 E-value=0.12 Score=53.33 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=58.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhh-hcCCCcEEEEEEECCCC-CHHHHHHHHHHHhcCC-------CCCCccHHH-
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQK-ETNKFNVVIWVTVSQPL-DLIKLQTEIATALKQS-------LPENEDKVR- 230 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~- 230 (929)
.-..++|.|..|+|||+|+.++.+.... .++.-+.++++-+++.. .+.++.+++...-... ..++....+
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3467899999999999999998876521 12335778999998875 4556666555431111 011111111
Q ss_pred ----HHHHHHHHHH-h-cCcEEEEEecCCC
Q 042574 231 ----RAGRLSEMLK-A-KAKFVLILDDMWE 254 (929)
Q Consensus 231 ----~~~~l~~~l~-~-~~~~LlvlDdv~~ 254 (929)
.+..+.++++ + ++++|+++||+..
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 1223445554 2 6899999999854
No 335
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.23 E-value=0.05 Score=52.71 Aligned_cols=115 Identities=10% Similarity=0.101 Sum_probs=59.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCC-----cEEEEEEECCCCCH--HHHHHHHHHHhcCCCCCCccHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKF-----NVVIWVTVSQPLDL--IKLQTEIATALKQSLPENEDKVRRAGR 234 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f-----~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~~~ 234 (929)
-.+++|+|+.|.|||||++.+........+.. ..+.++ .+.+.. ..+.+.+... ....-...+.+...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 46899999999999999999988653221111 112232 333221 1233333211 11111223344445
Q ss_pred HHHHHHhcCcEEEEEecCCCcCCc---cccccCCCCCCCCcEEEEEeCccccc
Q 042574 235 LSEMLKAKAKFVLILDDMWEAFPL---EEVGIPEPSEENGCKLVITTRSLGVS 284 (929)
Q Consensus 235 l~~~l~~~~~~LlvlDdv~~~~~~---~~l~~~~~~~~~gs~ilvTtR~~~v~ 284 (929)
+.+.+. .++=++++|+--..-+. +.+...+... +..||++|.+....
T Consensus 102 laral~-~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 102 FARLLL-HKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHH-cCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 666665 46778899997543221 1121111111 35677777776554
No 336
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.21 E-value=0.061 Score=60.30 Aligned_cols=87 Identities=20% Similarity=0.176 Sum_probs=47.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCC-CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLK 240 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 240 (929)
.+++.++|++|+||||++.+++...... .....+..|+....- ...+.+....+.++.+.....+.......+ ..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~-~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l-~~~- 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALL-YGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKAL-EQL- 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHH-HHh-
Confidence 3689999999999999999998876311 223456667653321 112233334444554432222222222222 222
Q ss_pred hcCcEEEEEecC
Q 042574 241 AKAKFVLILDDM 252 (929)
Q Consensus 241 ~~~~~LlvlDdv 252 (929)
...=++|+|..
T Consensus 298 -~~~DlVlIDt~ 308 (424)
T PRK05703 298 -RDCDVILIDTA 308 (424)
T ss_pred -CCCCEEEEeCC
Confidence 23567788876
No 337
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.21 E-value=0.035 Score=62.41 Aligned_cols=93 Identities=17% Similarity=0.222 Sum_probs=51.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCC-HHHHHHHHHHHh-cCCCCCCccH----HHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQTEIATAL-KQSLPENEDK----VRRAGR 234 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l-~~~~~~~~~~----~~~~~~ 234 (929)
.-..++|+|++|+|||||++.+++.........+ ++.+-|.+.+. +.++.+.+-..+ .......... ...+..
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~-~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITTNNPECH-LMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeE-EEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 3467899999999999999999997632222222 23555666543 223322221111 1111111111 112223
Q ss_pred HHHHH-HhcCcEEEEEecCCC
Q 042574 235 LSEML-KAKAKFVLILDDMWE 254 (929)
Q Consensus 235 l~~~l-~~~~~~LlvlDdv~~ 254 (929)
+.+++ ..++.+||++|++..
T Consensus 494 ~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHcCCCEEEEEeCchH
Confidence 33444 258899999999853
No 338
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.21 E-value=0.067 Score=53.35 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=29.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhhcCCC-------cEEEEEEECCC
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKF-------NVVIWVTVSQP 204 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f-------~~~~wv~~s~~ 204 (929)
.++.|.|++|+||||++.++..........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 5899999999999999999998874322221 25778876655
No 339
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.19 E-value=0.12 Score=55.93 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=41.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhc---CCCcEEEEEEECCCCCHHHHHHHHHHHhc
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLDLIKLQTEIATALK 219 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 219 (929)
..++-|+|++|+|||++|.+++....... ..-..++|++....++..++. ++++.++
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 57899999999999999999987642111 112479999998888877665 3444444
No 340
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.18 E-value=0.017 Score=57.36 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+.++|.|+|++|+||||+|+.+...+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999998765
No 341
>PRK03839 putative kinase; Provisional
Probab=95.13 E-value=0.018 Score=56.77 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.|.|.|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999986
No 342
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.12 E-value=0.2 Score=49.68 Aligned_cols=50 Identities=24% Similarity=0.397 Sum_probs=35.0
Q ss_pred cccccccch--HHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 138 TATLAGKKT--KKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 138 ~~~~vGr~~--~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
-..++|-+. +..++.-.+++.+-..--|.+||.-|+|||+|++++.+.+.
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~ 110 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYA 110 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHH
Confidence 367888643 22233333444444455689999999999999999999873
No 343
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.08 E-value=0.041 Score=51.32 Aligned_cols=39 Identities=23% Similarity=0.416 Sum_probs=28.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECC
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 203 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 203 (929)
++|.|+|..|+|||||++.+.+.+.. ..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~--~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKR--RGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhH--cCCceEEEEEccC
Confidence 48999999999999999999999842 3455555666554
No 344
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=1.1 Score=44.59 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=24.3
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 160 DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 160 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+.++-|.++|++|.|||.||++|+++.
T Consensus 187 dpprgvllygppg~gktml~kava~~t 213 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHT 213 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhcc
Confidence 457889999999999999999999975
No 345
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.03 E-value=0.05 Score=53.93 Aligned_cols=38 Identities=21% Similarity=0.139 Sum_probs=28.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCC
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 204 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 204 (929)
++.|.|++|+|||+||.++...... .-..++|++....
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~---~g~~v~~~s~e~~ 38 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLA---RGEPGLYVTLEES 38 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH---CCCcEEEEECCCC
Confidence 3689999999999999998887632 2345778876543
No 346
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.01 E-value=0.0045 Score=71.92 Aligned_cols=60 Identities=25% Similarity=0.229 Sum_probs=34.7
Q ss_pred cccccceeecccccccccC---ccccccCCCCEEEccCC--CCcccc----ccccCCCCCCEEEccCCC
Q 042574 567 NLTNLRSLLLRWCRRLKRV---PSVAKLLALQYLDLERT--WIEEVP----EGMEMLENLSHLYLSSPP 626 (929)
Q Consensus 567 ~l~~L~~L~l~~~~~~~~~---~~~~~l~~L~~L~l~~~--~i~~lp----~~i~~l~~L~~L~l~~~~ 626 (929)
.+++|+.|.+.+|..+... +.....++|+.|++++| .+...+ .....+.+|+.|+++.+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 3677888888877666652 34667777888887763 211111 122334555666665554
No 347
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.01 E-value=0.032 Score=58.31 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
+.|.|.|.+|+||||+|+++...+.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~ 26 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLE 26 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHH
Confidence 4689999999999999999999874
No 348
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.01 E-value=0.11 Score=54.69 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=23.5
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 160 DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 160 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+.+|+|.|+.|+||||+|+.+..-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999887665
No 349
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.97 E-value=0.035 Score=57.03 Aligned_cols=88 Identities=17% Similarity=0.161 Sum_probs=50.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCC--------------CC-C--
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQS--------------LP-E-- 224 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~--------------~~-~-- 224 (929)
.+++.|.|.+|+|||+||.++....... .-..++||+..+.+ .++.+.+. .++.+ .. .
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~--~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKN--FGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHH--HT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhh--cCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 5799999999999999999977654222 03457888875543 33333321 22210 00 0
Q ss_pred ---CccHHHHHHHHHHHHHhcCcEEEEEecCCC
Q 042574 225 ---NEDKVRRAGRLSEMLKAKAKFVLILDDMWE 254 (929)
Q Consensus 225 ---~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~ 254 (929)
..+.......+.+.+...+...+|+|.+..
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~ 126 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSA 126 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHH
Confidence 123444445555555444567889998743
No 350
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.96 E-value=0.11 Score=58.59 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=38.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECC-CCCHHHHHHHHHHHhcCCC
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQTEIATALKQSL 222 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~ 222 (929)
.+|++++|+.|+||||++.+++..+....+ ...+..++... .....+.++..++.++...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G-~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHG-ASKVALLTTDSYRIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcC-CCeEEEEeCCccchhHHHHHHHHHHHhCCCe
Confidence 479999999999999999999987632222 22455555432 1233344555566665543
No 351
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.94 E-value=0.11 Score=49.24 Aligned_cols=23 Identities=35% Similarity=0.614 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+|.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999886
No 352
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.92 E-value=0.046 Score=59.70 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=45.0
Q ss_pred ccccccchHHHHHHHHHHhcC------------C--CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEEC-C
Q 042574 139 ATLAGKKTKKVVERIWEDLMG------------D--KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVS-Q 203 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~------------~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s-~ 203 (929)
..++|+ +..++.+..++.. . ..+-|.++|++|+||||+|+.+........-.++...|...+ .
T Consensus 15 ~~IiGQ--e~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQ--DDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCH--HHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcc
Confidence 457887 4555555555422 0 146789999999999999999999863222223332222211 1
Q ss_pred CCCHHHHHHHHHHH
Q 042574 204 PLDLIKLQTEIATA 217 (929)
Q Consensus 204 ~~~~~~~~~~i~~~ 217 (929)
..+...+.+.+...
T Consensus 93 G~d~e~~ir~L~~~ 106 (443)
T PRK05201 93 GRDVESIIRDLVEI 106 (443)
T ss_pred cCCHHHHHHHHHHH
Confidence 22455555555443
No 353
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.91 E-value=0.16 Score=56.29 Aligned_cols=61 Identities=18% Similarity=0.117 Sum_probs=37.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECC-CCCHHHHHHHHHHHhcCCCC
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQTEIATALKQSLP 223 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~ 223 (929)
..+|+++|+.|+||||++.+++.... .....+.+..+.... .....+.+...++.++.+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~-~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~ 252 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAV-IRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR 252 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee
Confidence 46999999999999999999987642 122223444444332 12333445556666665543
No 354
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.91 E-value=0.03 Score=56.97 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.|.|.|++|+||||+|+.+++.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998876
No 355
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.90 E-value=0.091 Score=58.09 Aligned_cols=88 Identities=16% Similarity=0.316 Sum_probs=53.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCC-HHHHHHHHHHHhcCCC------CCCccHHHH---
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQTEIATALKQSL------PENEDKVRR--- 231 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~------~~~~~~~~~--- 231 (929)
...++|+|..|+|||||++.++... ..+.++.+-+++... +.++.+.++..-+... ..+.....+
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~-----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT-----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC-----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 4689999999999999999888643 235666677777654 3455555544311110 011111111
Q ss_pred ---HHHHHHHHH-hcCcEEEEEecCCC
Q 042574 232 ---AGRLSEMLK-AKAKFVLILDDMWE 254 (929)
Q Consensus 232 ---~~~l~~~l~-~~~~~LlvlDdv~~ 254 (929)
+..+.++++ +++.+||++||+..
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 122334443 58999999999854
No 356
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.90 E-value=0.018 Score=51.59 Aligned_cols=22 Identities=36% Similarity=0.595 Sum_probs=17.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 042574 165 IGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 165 v~I~G~gGiGKTtLa~~v~~~~ 186 (929)
|.|+|.+|+||||+|+.++...
T Consensus 2 vLleg~PG~GKT~la~~lA~~~ 23 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSL 23 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHT
T ss_pred EeeECCCccHHHHHHHHHHHHc
Confidence 6799999999999999999876
No 357
>PRK04040 adenylate kinase; Provisional
Probab=94.89 E-value=0.023 Score=56.03 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=22.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+|+|+|++|+||||+++.+...+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999876
No 358
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.89 E-value=0.036 Score=52.21 Aligned_cols=25 Identities=40% Similarity=0.648 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
-.+++|+|..|.|||||++.+....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4689999999999999999998765
No 359
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.87 E-value=0.043 Score=56.33 Aligned_cols=36 Identities=28% Similarity=0.349 Sum_probs=28.1
Q ss_pred HHHHHhcC-CCeeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 152 RIWEDLMG-DKVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 152 ~l~~~l~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
++..+... +...+|+|.|+.|+|||||++.+.....
T Consensus 22 ~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 22 RLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred HHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 33333333 4578999999999999999999998873
No 360
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.87 E-value=0.021 Score=50.64 Aligned_cols=23 Identities=43% Similarity=0.703 Sum_probs=20.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHh
Q 042574 165 IGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 165 v~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
|-|+|++|+|||++|+.++.+..
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999988874
No 361
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.84 E-value=0.081 Score=58.78 Aligned_cols=89 Identities=18% Similarity=0.266 Sum_probs=49.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHh-----cCCCCCCccHHHH-----
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATAL-----KQSLPENEDKVRR----- 231 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l-----~~~~~~~~~~~~~----- 231 (929)
...++|+|..|+|||||++.+.... .....+++..-.+..++.++....+... ..-...+.....+
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~----~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD----AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC----CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 4689999999999999998887643 1222344443223445555444333322 1111111111111
Q ss_pred -HHHHHHHHH-hcCcEEEEEecCCC
Q 042574 232 -AGRLSEMLK-AKAKFVLILDDMWE 254 (929)
Q Consensus 232 -~~~l~~~l~-~~~~~LlvlDdv~~ 254 (929)
+..+.+++. +++.+|+++||+..
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccchHH
Confidence 122334443 57899999999854
No 362
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.83 E-value=0.2 Score=59.38 Aligned_cols=87 Identities=15% Similarity=0.167 Sum_probs=51.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCC--HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD--LIKLQTEIATALKQSLPENEDKVRRAGRLSEML 239 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 239 (929)
.+||+++|+.|+||||.+.+++..+.. ......+..++.. .+. ..+.++...+.++.+.....+..... ...+.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~-~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~-~al~~~ 261 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVA-REGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLR-FALAAL 261 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHH-HcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHH-HHHHHh
Confidence 479999999999999999999887632 2222345555543 233 44556666777766544333333332 233333
Q ss_pred HhcCcEEEEEecCC
Q 042574 240 KAKAKFVLILDDMW 253 (929)
Q Consensus 240 ~~~~~~LlvlDdv~ 253 (929)
++ +=++++|-.-
T Consensus 262 -~~-~D~VLIDTAG 273 (767)
T PRK14723 262 -GD-KHLVLIDTVG 273 (767)
T ss_pred -cC-CCEEEEeCCC
Confidence 23 3467777764
No 363
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.80 E-value=0.1 Score=53.13 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+++|+|+.|.|||||.+.+..-.
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999998844
No 364
>PRK00625 shikimate kinase; Provisional
Probab=94.80 E-value=0.024 Score=55.03 Aligned_cols=23 Identities=30% Similarity=0.428 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.|.++||+|+||||+++.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998876
No 365
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=94.80 E-value=0.086 Score=62.75 Aligned_cols=128 Identities=16% Similarity=0.176 Sum_probs=67.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhc
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAK 242 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 242 (929)
+-|.++|++|+|||++|+.+++... ..| +.++.++ +.. ... . ........+.......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~---~~f---~~is~~~------~~~----~~~----g--~~~~~~~~~f~~a~~~ 243 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAK---VPF---FTISGSD------FVE----MFV----G--VGASRVRDMFEQAKKA 243 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcC---CCE---EEEehHH------hHH----hhh----c--ccHHHHHHHHHHHHhc
Confidence 4599999999999999999988752 222 2222221 110 000 0 0111222233333345
Q ss_pred CcEEEEEecCCCcCC----------------ccccccCCCC--CCCCcEEEEEeCcccccc-c-C---Ccce-EecccCC
Q 042574 243 AKFVLILDDMWEAFP----------------LEEVGIPEPS--EENGCKLVITTRSLGVSR-S-M---DCKE-IGVELLS 298 (929)
Q Consensus 243 ~~~LlvlDdv~~~~~----------------~~~l~~~~~~--~~~gs~ilvTtR~~~v~~-~-~---~~~~-~~l~~L~ 298 (929)
.+.+|++|+++.... +..+...+.. ...+.-||.||...+... . . .... +.+...+
T Consensus 244 ~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 689999999965210 0111111111 123445555776544321 1 1 1122 7788888
Q ss_pred HHHHHHHHHhhhcc
Q 042574 299 QEEALNLFLDKVRI 312 (929)
Q Consensus 299 ~~~~~~Lf~~~~~~ 312 (929)
.++-.++++.+...
T Consensus 324 ~~~R~~Il~~~~~~ 337 (644)
T PRK10733 324 VRGREQILKVHMRR 337 (644)
T ss_pred HHHHHHHHHHHhhc
Confidence 88888888877654
No 366
>PRK13531 regulatory ATPase RavA; Provisional
Probab=94.78 E-value=0.05 Score=60.70 Aligned_cols=44 Identities=14% Similarity=0.208 Sum_probs=35.4
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..++|| ++.++.+...+..+. -|.|.|++|+|||++|+.+....
T Consensus 20 ~~i~gr--e~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 20 KGLYER--SHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhccCc--HHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHh
Confidence 457898 677777777766543 48999999999999999998875
No 367
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.76 E-value=0.15 Score=57.05 Aligned_cols=92 Identities=23% Similarity=0.319 Sum_probs=58.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCC-CHHHHHHHHHHHhcCC------CCCCccHHH---
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQTEIATALKQS------LPENEDKVR--- 230 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~--- 230 (929)
.-..++|.|.+|+|||||+.++...... .+-+.++++-+++.. .+.++...+...-... ...+.....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~--~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISK--QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh--hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 3468999999999999999999887632 356788888887665 3455555554431110 011111111
Q ss_pred ---HHHHHHHHHH-h-cCcEEEEEecCCC
Q 042574 231 ---RAGRLSEMLK-A-KAKFVLILDDMWE 254 (929)
Q Consensus 231 ---~~~~l~~~l~-~-~~~~LlvlDdv~~ 254 (929)
.+..+.++++ + ++.+||++||+..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 1223445554 3 7999999999954
No 368
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.73 E-value=0.014 Score=34.81 Aligned_cols=21 Identities=48% Similarity=0.673 Sum_probs=14.9
Q ss_pred CCcEEEecCCCCcccCccccc
Q 042574 547 GLKVLNLSHTNIEVLPSSVSN 567 (929)
Q Consensus 547 ~L~~L~l~~~~i~~lp~~i~~ 567 (929)
+|++|++++|.++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467778888877777766554
No 369
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.73 E-value=0.11 Score=53.64 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=25.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKE 189 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 189 (929)
-++|.++|++|.|||+|+++++..+..+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 4899999999999999999999998543
No 370
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.72 E-value=0.077 Score=51.82 Aligned_cols=25 Identities=40% Similarity=0.477 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
-.+++|+|+.|.|||||++.++...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998864
No 371
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.70 E-value=0.022 Score=56.32 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
||.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 372
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.68 E-value=0.083 Score=48.54 Aligned_cols=114 Identities=21% Similarity=0.364 Sum_probs=64.0
Q ss_pred cccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCc-cccccccccee
Q 042574 496 EENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPS-SVSNLTNLRSL 574 (929)
Q Consensus 496 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L 574 (929)
..+++.+.+.. .+..++...|..+++|+.+.+..+ +..++...|.+++.|+.+.+.+ .+..++. .+..+.+|+.+
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 44678888774 577888888889999999999874 7778888888998999999976 5555554 45668999999
Q ss_pred ecccccccccCc--cccccCCCCEEEccCCCCcccccc-ccCCCCC
Q 042574 575 LLRWCRRLKRVP--SVAKLLALQYLDLERTWIEEVPEG-MEMLENL 617 (929)
Q Consensus 575 ~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L 617 (929)
.+..+ +..++ .+.+. +|+.+.+.. .+..++.. +.+.++|
T Consensus 87 ~~~~~--~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 87 DIPSN--ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EETTT---BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccCcc--ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 98653 45555 46676 888888765 45555544 5555554
No 373
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.67 E-value=0.023 Score=55.65 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 374
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.62 E-value=0.023 Score=57.00 Aligned_cols=23 Identities=48% Similarity=0.666 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+|+|.|++|+||||||+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 375
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.60 E-value=0.059 Score=51.98 Aligned_cols=113 Identities=17% Similarity=0.140 Sum_probs=58.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECC--CCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ--PLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEML 239 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 239 (929)
..+++|+|+.|.|||||.+.++.... .....+++.-.. ..+..+.. ...++... .-...+.+...+.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~----~~~G~v~~~g~~~~~~~~~~~~---~~~i~~~~-qLS~G~~qrl~laral 97 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK----PDSGEILVDGKEVSFASPRDAR---RAGIAMVY-QLSVGERQMVEIARAL 97 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC----CCCeEEEECCEECCcCCHHHHH---hcCeEEEE-ecCHHHHHHHHHHHHH
Confidence 46899999999999999999987642 233344442111 11111111 11111110 0112333444455666
Q ss_pred HhcCcEEEEEecCCCcCCc---cccccCCCC-CCCCcEEEEEeCcccc
Q 042574 240 KAKAKFVLILDDMWEAFPL---EEVGIPEPS-EENGCKLVITTRSLGV 283 (929)
Q Consensus 240 ~~~~~~LlvlDdv~~~~~~---~~l~~~~~~-~~~gs~ilvTtR~~~v 283 (929)
. .++-++++|+--..-+. +.+...+.. ...|..||++|.+...
T Consensus 98 ~-~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 98 A-RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred h-cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 5 45788899997553331 111111111 1236678888887653
No 376
>PF13245 AAA_19: Part of AAA domain
Probab=94.59 E-value=0.087 Score=43.09 Aligned_cols=26 Identities=31% Similarity=0.238 Sum_probs=19.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+-+++.|.|++|.|||+++.......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34678899999999996555554444
No 377
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.094 Score=60.36 Aligned_cols=92 Identities=20% Similarity=0.311 Sum_probs=58.4
Q ss_pred ccccccchHHHHHHHHHHhcC---------C---CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCC
Q 042574 139 ATLAGKKTKKVVERIWEDLMG---------D---KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 206 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~---------~---~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 206 (929)
.++=|- ++.+.+|.+-+.- . ..+-|.++|++|.|||-+|++|+.+.. ..|++|-.+
T Consensus 672 dDVGGL--eevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs--------L~FlSVKGP-- 739 (953)
T KOG0736|consen 672 DDVGGL--EEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS--------LNFLSVKGP-- 739 (953)
T ss_pred hcccCH--HHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce--------eeEEeecCH--
Confidence 455554 6666777665531 1 145789999999999999999998762 345555432
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCC
Q 042574 207 LIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWE 254 (929)
Q Consensus 207 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~ 254 (929)
+++...- ...++..+++.++-+..++++|+||.++.
T Consensus 740 ------ELLNMYV------GqSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ------ELLNMYV------GQSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ------HHHHHHh------cchHHHHHHHHHHhhccCCeEEEeccccc
Confidence 1111110 11233445555555667899999999975
No 378
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.52 E-value=0.13 Score=57.19 Aligned_cols=92 Identities=22% Similarity=0.333 Sum_probs=58.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCC-HHHHHHHHHHHhcCCC------CCCccHHH---
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQTEIATALKQSL------PENEDKVR--- 230 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~------~~~~~~~~--- 230 (929)
.-..++|.|.+|+|||+|+.++..... ..+-+.++|+-+++... +.++.+++...-.... ..+.....
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~--~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV--GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH--hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 346799999999999999999888752 22346788888887654 4555555544311100 11111111
Q ss_pred ---HHHHHHHHHH--hcCcEEEEEecCCC
Q 042574 231 ---RAGRLSEMLK--AKAKFVLILDDMWE 254 (929)
Q Consensus 231 ---~~~~l~~~l~--~~~~~LlvlDdv~~ 254 (929)
.+..+.+.++ +++++|+++||+..
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR 243 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFR 243 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHH
Confidence 2234455655 47999999999854
No 379
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.28 Score=56.98 Aligned_cols=130 Identities=18% Similarity=0.211 Sum_probs=72.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLK 240 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 240 (929)
..+.|.++|++|.|||.||+++++.. ...|- .+... ++ .. .+ ....+..+..+...-.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~---~~~fi-----~v~~~----~l----~s----k~--vGesek~ir~~F~~A~ 332 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES---RSRFI-----SVKGS----EL----LS----KW--VGESEKNIRELFEKAR 332 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC---CCeEE-----EeeCH----HH----hc----cc--cchHHHHHHHHHHHHH
Confidence 35689999999999999999999964 22332 21111 11 11 00 1123334444444444
Q ss_pred hcCcEEEEEecCCCcCC-------------ccccccCCCC--CCCCcEEEEEeCcccccc-cC----Ccce-EecccCCH
Q 042574 241 AKAKFVLILDDMWEAFP-------------LEEVGIPEPS--EENGCKLVITTRSLGVSR-SM----DCKE-IGVELLSQ 299 (929)
Q Consensus 241 ~~~~~LlvlDdv~~~~~-------------~~~l~~~~~~--~~~gs~ilvTtR~~~v~~-~~----~~~~-~~l~~L~~ 299 (929)
+..+..|++|+++.... ...+...+.. ...+..||-||-...... .+ .-.. +.+..-+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 56799999999964211 1112222221 123333444444332221 11 1122 88899999
Q ss_pred HHHHHHHHhhhcc
Q 042574 300 EEALNLFLDKVRI 312 (929)
Q Consensus 300 ~~~~~Lf~~~~~~ 312 (929)
++..+.|+.+...
T Consensus 413 ~~r~~i~~~~~~~ 425 (494)
T COG0464 413 EERLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988764
No 380
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=0.13 Score=58.85 Aligned_cols=48 Identities=25% Similarity=0.301 Sum_probs=39.0
Q ss_pred ccccccch-HHHHHHHHHHhcCCC---------eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKT-KKVVERIWEDLMGDK---------VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~-~~~~~~l~~~l~~~~---------~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+.-|.+. .+++.++++.|.++. ++-|..+|++|.|||.||++++.+.
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA 207 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 207 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc
Confidence 56677533 566788888888653 6789999999999999999999986
No 381
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.49 E-value=0.74 Score=46.77 Aligned_cols=223 Identities=16% Similarity=0.189 Sum_probs=115.8
Q ss_pred HHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhh---cCCCcEEEEEEECCC----------C--------
Q 042574 147 KKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKE---TNKFNVVIWVTVSQP----------L-------- 205 (929)
Q Consensus 147 ~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~----------~-------- 205 (929)
++....+......++.+=+.++|++|.||-|.+..+.++.-.. +-.-+...|.+-|.. +
T Consensus 19 ~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSD 98 (351)
T KOG2035|consen 19 EELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSD 98 (351)
T ss_pred HHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhh
Confidence 4445555555555678889999999999999888888776211 112233445433221 1
Q ss_pred ---CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcE-EEEEecCCCc--CCccccccCCCCCCCCcEEEEEeC
Q 042574 206 ---DLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKF-VLILDDMWEA--FPLEEVGIPEPSEENGCKLVITTR 279 (929)
Q Consensus 206 ---~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~-LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR 279 (929)
.-+-+.++++.+.....+-+. ...+.| ++|+-.+++. ++...+..-.......+|+|+...
T Consensus 99 aG~~DRvViQellKevAQt~qie~-------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cn 165 (351)
T KOG2035|consen 99 AGNYDRVVIQELLKEVAQTQQIET-------------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCN 165 (351)
T ss_pred cCcccHHHHHHHHHHHHhhcchhh-------------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEec
Confidence 012234445544443211100 012233 3444444331 111122111112235667776433
Q ss_pred cc-cccccCCcce--EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCcc-HHHHHHHhhhcC-------
Q 042574 280 SL-GVSRSMDCKE--IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLP-LAIVTVASCMRG------- 348 (929)
Q Consensus 280 ~~-~v~~~~~~~~--~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P-lai~~~~~~L~~------- 348 (929)
+- .+-....... +++..-+++|....+.+.+....-.. -.+++++|+++++|.- -|+-++ ..++-
T Consensus 166 s~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~l---p~~~l~rIa~kS~~nLRrAllml-E~~~~~n~~~~a 241 (351)
T KOG2035|consen 166 STSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQL---PKELLKRIAEKSNRNLRRALLML-EAVRVNNEPFTA 241 (351)
T ss_pred CcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccC---cHHHHHHHHHHhcccHHHHHHHH-HHHHhccccccc
Confidence 21 1111122222 89999999999999988776554322 2788999999999874 444333 22221
Q ss_pred C---CChhHHHHHHHHHhhhhccCCCCchhhhhhHHhhcccC
Q 042574 349 V---DEIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRL 387 (929)
Q Consensus 349 ~---~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L 387 (929)
+ -..-+|+-++.++.+.-.... .+..+..+=..=|+-|
T Consensus 242 ~~~~i~~~dWe~~i~e~a~~i~~eQ-s~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 242 NSQVIPKPDWEIYIQEIARVILKEQ-SPAKLLEVRGRLYELL 282 (351)
T ss_pred cCCCCCCccHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHH
Confidence 1 124589998888765544321 2234444444444444
No 382
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.49 E-value=0.074 Score=54.63 Aligned_cols=60 Identities=23% Similarity=0.367 Sum_probs=43.3
Q ss_pred HHHHHHhc--CCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHH
Q 042574 151 ERIWEDLM--GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQ 211 (929)
Q Consensus 151 ~~l~~~l~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 211 (929)
.+++..+. .++..+|+|.|.||+|||||.-++...+ ...++--.++=|+-|.+++--.++
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCcccc
Confidence 34444443 3567899999999999999999999988 444555566667767776654444
No 383
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.46 E-value=0.035 Score=54.30 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...|.|+|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999986
No 384
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.44 E-value=0.05 Score=58.73 Aligned_cols=50 Identities=16% Similarity=0.350 Sum_probs=42.0
Q ss_pred cccccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 136 LTTATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 136 ~~~~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
.|-+.+||. ++.+..|+..+.++.+.-|.|.|..|+||||+|+.+++-..
T Consensus 14 ~pf~~ivGq--~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 14 FPFTAIVGQ--EEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CCHHHHhCh--HHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 345789998 67777888888888888888999999999999999988763
No 385
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.43 E-value=0.17 Score=45.31 Aligned_cols=48 Identities=27% Similarity=0.342 Sum_probs=33.7
Q ss_pred ccccccch--HHHHHHHHHHhcCC---CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKT--KKVVERIWEDLMGD---KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~--~~~~~~l~~~l~~~---~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..++|+.. +..++.|...+.+. .+-|++.+|.+|+|||-+|+.+++..
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 56788732 23334444444442 36699999999999999999998885
No 386
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.43 E-value=0.022 Score=59.78 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=26.1
Q ss_pred HHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 151 ERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 151 ~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+++.+...+ +=|.++|+.|+|||++++......
T Consensus 23 ~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 23 SYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp HHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCS
T ss_pred HHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccC
Confidence 44555555444 456999999999999999887654
No 387
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.42 E-value=0.11 Score=50.73 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
-.+++|+|+.|.|||||++.++.-.
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4689999999999999999998865
No 388
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.42 E-value=0.14 Score=60.85 Aligned_cols=85 Identities=16% Similarity=0.196 Sum_probs=55.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLP-----ENEDKVRRAGRLS 236 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 236 (929)
.+++-|+|.+|+||||||.+++..... .-..++|++....++. ..+++++.+.. .....+.....+.
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~---~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQA---AGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 578999999999999999887665422 2355799987777664 25666665432 1122233333333
Q ss_pred HHHHhcCcEEEEEecCCC
Q 042574 237 EMLKAKAKFVLILDDMWE 254 (929)
Q Consensus 237 ~~l~~~~~~LlvlDdv~~ 254 (929)
..+..++.-|+|+|.+-.
T Consensus 132 ~lv~~~~~~LVVIDSI~a 149 (790)
T PRK09519 132 MLIRSGALDIVVIDSVAA 149 (790)
T ss_pred HHhhcCCCeEEEEcchhh
Confidence 334455688899999853
No 389
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.40 E-value=0.032 Score=54.72 Aligned_cols=23 Identities=43% Similarity=0.716 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999887
No 390
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.38 E-value=0.031 Score=52.85 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+|.|.|++|+||||+|+.+....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999875
No 391
>PRK05439 pantothenate kinase; Provisional
Probab=94.37 E-value=0.24 Score=52.58 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=24.0
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 160 DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 160 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+...+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 446799999999999999999998866
No 392
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.37 E-value=0.034 Score=54.72 Aligned_cols=24 Identities=38% Similarity=0.452 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+++|+|++|+||||+++.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998875
No 393
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.37 E-value=0.063 Score=49.11 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|.+.|.-|+||||+++.++...
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999986
No 394
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.37 E-value=0.13 Score=59.31 Aligned_cols=41 Identities=20% Similarity=0.167 Sum_probs=31.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCC
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 204 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 204 (929)
.-+++.|.|++|+|||||+.++...... .-..+++++..+.
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~---~ge~~~y~s~eEs 302 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACA---NKERAILFAYEES 302 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEEeeCC
Confidence 3579999999999999999999887632 2355777776554
No 395
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.33 E-value=0.04 Score=55.72 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNR 185 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~ 185 (929)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999998743
No 396
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.30 E-value=0.078 Score=55.50 Aligned_cols=54 Identities=26% Similarity=0.301 Sum_probs=40.0
Q ss_pred ccccccch-HHHHHHHHHHhcCCC--eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCC
Q 042574 139 ATLAGKKT-KKVVERIWEDLMGDK--VTKIGVWGMGGIGKTTIMKEINNRLQKETNKF 193 (929)
Q Consensus 139 ~~~vGr~~-~~~~~~l~~~l~~~~--~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f 193 (929)
..+||+.. .++..-+++.+.++. .+.|.|+|++|.|||+||..+...+ ...-.|
T Consensus 39 dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL-G~dvPF 95 (450)
T COG1224 39 DGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL-GEDVPF 95 (450)
T ss_pred CcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh-CCCCCc
Confidence 67899733 233445666666653 6899999999999999999999998 333455
No 397
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.30 E-value=0.045 Score=52.68 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=24.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
...+++|+|..|+|||||++.+...+.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 457999999999999999999998873
No 398
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.30 E-value=0.048 Score=54.49 Aligned_cols=108 Identities=16% Similarity=0.218 Sum_probs=53.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHH-HHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHh
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLI-KLQTEIATALKQSLPENEDKVRRAGRLSEMLKA 241 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (929)
.+|.|+|+.|+||||++..+...... .....+++- .++.... .-...+..+-. . ..+.......+...+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~---~~~~~i~t~-e~~~E~~~~~~~~~i~q~~--v--g~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK---NKTHHILTI-EDPIEFVHESKRSLINQRE--V--GLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh---cCCcEEEEE-cCCccccccCccceeeecc--c--CCCccCHHHHHHHHhcC
Confidence 47999999999999999988877631 222233322 2211100 00001111100 0 11111223334445543
Q ss_pred cCcEEEEEecCCCcCCccccccCCCCCCCCcEEEEEeCccc
Q 042574 242 KAKFVLILDDMWEAFPLEEVGIPEPSEENGCKLVITTRSLG 282 (929)
Q Consensus 242 ~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~ 282 (929)
.+=++++|++.+.+......... ..|..|+.|+-..+
T Consensus 74 -~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~ 110 (198)
T cd01131 74 -DPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNS 110 (198)
T ss_pred -CcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCc
Confidence 46689999997655443322221 23555666665443
No 399
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.28 E-value=0.29 Score=54.51 Aligned_cols=92 Identities=22% Similarity=0.336 Sum_probs=57.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCC-CHHHHHHHHHHHhcCCC------CCCccHHH---
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQTEIATALKQSL------PENEDKVR--- 230 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~--- 230 (929)
.-..++|.|.+|+|||||+.++...... .+-..++++-+++.. .+.++.+++...-.... ..+.....
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~--~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAK--EHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHh--cCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3468999999999999999998876532 223467788887764 34566666644211110 11111111
Q ss_pred ---HHHHHHHHHH--hcCcEEEEEecCCC
Q 042574 231 ---RAGRLSEMLK--AKAKFVLILDDMWE 254 (929)
Q Consensus 231 ---~~~~l~~~l~--~~~~~LlvlDdv~~ 254 (929)
.+..+.++++ +++.+||++||+..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR 248 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhH
Confidence 1234455554 47899999999954
No 400
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.28 E-value=0.046 Score=52.95 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=30.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCC
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 204 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 204 (929)
..++.+.|+.|+|||.||+.++..+. . +.....+-++.+.-
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~-~-~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLF-V-GSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT---SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhc-c-CCccchHHHhhhcc
Confidence 46789999999999999999999872 1 33444555555543
No 401
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.28 E-value=0.31 Score=51.57 Aligned_cols=51 Identities=20% Similarity=0.203 Sum_probs=36.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIAT 216 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 216 (929)
..++.|.|.+|+||||++.+++..... .+-..++|++.... ..++...+..
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~--~~g~~vl~iS~E~~--~~~~~~r~~~ 80 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLIT--QHGVRVGTISLEEP--VVRTARRLLG 80 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH--hcCceEEEEEcccC--HHHHHHHHHH
Confidence 358899999999999999999887632 22356888887653 4455555444
No 402
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.28 E-value=0.047 Score=53.46 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...+|.|+|++|+||||+|+.++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999999987
No 403
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.27 E-value=2.4 Score=45.60 Aligned_cols=49 Identities=20% Similarity=0.169 Sum_probs=34.3
Q ss_pred eEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHH
Q 042574 291 EIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAI 339 (929)
Q Consensus 291 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 339 (929)
.+++++++++|+..++.-......-......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 3789999999999999876644432112344556677777779999544
No 404
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.27 E-value=0.095 Score=55.73 Aligned_cols=85 Identities=20% Similarity=0.238 Sum_probs=48.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCC----CccHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPE----NEDKVRRAGRLSE 237 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~l~~ 237 (929)
.+++-|+|+.|+||||||..+...... ....++|++....++... +.+++.+.+. ..+..+.+-.+..
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~---~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQK---QGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH---TT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhc---ccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 469999999999999999998887632 245689999877776543 3344433211 1111222223333
Q ss_pred H-HHhcCcEEEEEecCCC
Q 042574 238 M-LKAKAKFVLILDDMWE 254 (929)
Q Consensus 238 ~-l~~~~~~LlvlDdv~~ 254 (929)
. ++.+.--++|+|.|-.
T Consensus 125 ~lirsg~~~lVVvDSv~a 142 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAA 142 (322)
T ss_dssp HHHHTTSESEEEEE-CTT
T ss_pred HHhhcccccEEEEecCcc
Confidence 3 3445556888898854
No 405
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.26 E-value=1.3 Score=47.11 Aligned_cols=165 Identities=14% Similarity=0.066 Sum_probs=87.2
Q ss_pred HHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHHhh--------hcCCCcEEEEEEE-CCCCCHHHHHHHHHHHhc
Q 042574 150 VERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQK--------ETNKFNVVIWVTV-SQPLDLIKLQTEIATALK 219 (929)
Q Consensus 150 ~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~--------~~~~f~~~~wv~~-s~~~~~~~~~~~i~~~l~ 219 (929)
++.+...+..+. .++..++|..|.||+++|..+.+..-. ..+.++ +.++.. +....++++. ++.+.+.
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n-~~~~d~~g~~i~vd~Ir-~l~~~~~ 82 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPAN-IILFDIFDKDLSKSEFL-SAINKLY 82 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcc-eEEeccCCCcCCHHHHH-HHHHHhc
Confidence 344555665555 467789999999999999999887611 112222 222221 1222222222 2222221
Q ss_pred CCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC--ccccccCCCCCCCCcEEEEEe-CcccccccCC--cceEec
Q 042574 220 QSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP--LEEVGIPEPSEENGCKLVITT-RSLGVSRSMD--CKEIGV 294 (929)
Q Consensus 220 ~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~ilvTt-R~~~v~~~~~--~~~~~l 294 (929)
... ...+++-++|+||+..... ...+...+..-..++.+|++| ....+..... +..+++
T Consensus 83 ~~~----------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f 146 (299)
T PRK07132 83 FSS----------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNV 146 (299)
T ss_pred cCC----------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEEC
Confidence 110 0124677888899865422 222222222223456666555 4444443222 333899
Q ss_pred ccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHH
Q 042574 295 ELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVT 341 (929)
Q Consensus 295 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 341 (929)
.++++++..+.+... +. .++.+..++...+|.=-|+..
T Consensus 147 ~~l~~~~l~~~l~~~-~~--------~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 147 KEPDQQKILAKLLSK-NK--------EKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCCCHHHHHHHHHHc-CC--------ChhHHHHHHHHcCCHHHHHHH
Confidence 999999998877654 21 123456666666763344444
No 406
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.26 E-value=0.24 Score=55.11 Aligned_cols=89 Identities=9% Similarity=0.208 Sum_probs=52.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCC-HHHHHHHHHHHhcCC-------CCCCccHHH--
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQTEIATALKQS-------LPENEDKVR-- 230 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~~-- 230 (929)
....++|+|..|+|||||+++++... .-+.++++-+++... +.++..+.+..-+.. ..+......
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~-----~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA-----DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-----CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 34689999999999999999988764 224556677776654 334444443321111 111111111
Q ss_pred ---HHHHHHHHHH-hcCcEEEEEecCCC
Q 042574 231 ---RAGRLSEMLK-AKAKFVLILDDMWE 254 (929)
Q Consensus 231 ---~~~~l~~~l~-~~~~~LlvlDdv~~ 254 (929)
.+..+.+++. +++.+|+++||+..
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 1223344443 58999999999954
No 407
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.26 E-value=0.067 Score=57.79 Aligned_cols=47 Identities=19% Similarity=0.352 Sum_probs=37.5
Q ss_pred cccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 138 TATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 138 ~~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
-..+||. +..+..++-.+.++...-|.|.|..|+|||||++.+..-.
T Consensus 3 f~~ivgq--~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQ--DEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccH--HHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 3568997 5666677666667666678899999999999999998765
No 408
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.25 E-value=0.039 Score=53.98 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
++|.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998875
No 409
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.24 E-value=0.009 Score=57.37 Aligned_cols=73 Identities=23% Similarity=0.348 Sum_probs=38.4
Q ss_pred cccccccccceeEEEEecCCCccccchhchh-hhcCCccEEEEecCcchhhhhccCcchhhhhhccccccccccCCCcce
Q 042574 762 LVNIGKFSHDLKVLSFVHCHNLKNLFSLWLL-PALQNLEVLKVYGCDSIKEIIAVEDEETEKELATNTIINTVTLPRLKK 840 (929)
Q Consensus 762 l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l-~~L~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~ 840 (929)
++.+..++ .++.|.+.+|..+.+.. +..+ +-.++|+.|+|++|+.+++-- - .....|++|+.
T Consensus 118 le~L~~l~-~i~~l~l~~ck~~dD~~-L~~l~~~~~~L~~L~lsgC~rIT~~G--------L-------~~L~~lknLr~ 180 (221)
T KOG3864|consen 118 LEHLRDLR-SIKSLSLANCKYFDDWC-LERLGGLAPSLQDLDLSGCPRITDGG--------L-------ACLLKLKNLRR 180 (221)
T ss_pred HHHHhccc-hhhhheeccccchhhHH-HHHhcccccchheeeccCCCeechhH--------H-------HHHHHhhhhHH
Confidence 44445555 66666677766665531 1111 134566666666666665431 0 11224666666
Q ss_pred eeccccccccc
Q 042574 841 LRFYFLREFKR 851 (929)
Q Consensus 841 L~l~~~~~L~~ 851 (929)
|.|.++|....
T Consensus 181 L~l~~l~~v~~ 191 (221)
T KOG3864|consen 181 LHLYDLPYVAN 191 (221)
T ss_pred HHhcCchhhhc
Confidence 66666654443
No 410
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.23 E-value=0.16 Score=49.43 Aligned_cols=117 Identities=18% Similarity=0.078 Sum_probs=64.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECC---CCCHHHHHHHHH--H--HhcCC--CCCCcc--HHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ---PLDLIKLQTEIA--T--ALKQS--LPENED--KVR 230 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~--~--~l~~~--~~~~~~--~~~ 230 (929)
...|-|+|..|-||||.|..++-+.. ++-..+..+.+-. ..+....++.+- . +.+.. +..... ...
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~ra~---g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMALRAV---GHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHHHHH---HCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 46899999999999999999888763 2333444444433 234444444321 0 01111 111111 111
Q ss_pred HH----HHHHHHHHhcCcEEEEEecCCC-----cCCccccccCCCCCCCCcEEEEEeCcc
Q 042574 231 RA----GRLSEMLKAKAKFVLILDDMWE-----AFPLEEVGIPEPSEENGCKLVITTRSL 281 (929)
Q Consensus 231 ~~----~~l~~~l~~~~~~LlvlDdv~~-----~~~~~~l~~~~~~~~~gs~ilvTtR~~ 281 (929)
.+ ....+.+..++-=|+|||.+-. ..+.+++...+.....+.-||+|-|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11 2223444456778999999853 223344443344445677999999974
No 411
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.20 E-value=0.11 Score=52.75 Aligned_cols=58 Identities=28% Similarity=0.369 Sum_probs=34.9
Q ss_pred HHHHHhc--CCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHH
Q 042574 152 RIWEDLM--GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKL 210 (929)
Q Consensus 152 ~l~~~l~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 210 (929)
+++..+. .++..+|+|.|+||+|||||.-++...+. ..++--.++=|+-|..++--.+
T Consensus 17 ~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~-~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 17 ELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR-ERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH-HTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh-hcCCceEEEEECCCCCCCCCcc
Confidence 3444443 24578999999999999999999999884 3333334555555555554333
No 412
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.20 E-value=0.32 Score=54.11 Aligned_cols=48 Identities=25% Similarity=0.398 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhc-----CCC--eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEE
Q 042574 147 KKVVERIWEDLM-----GDK--VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199 (929)
Q Consensus 147 ~~~~~~l~~~l~-----~~~--~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 199 (929)
.+.++++-.||. .+. -+|+.|.|++|+||||.++.++..+ .+..+=|.
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel-----g~~~~Ew~ 142 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL-----GYQLIEWS 142 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh-----Cceeeeec
Confidence 345667777776 333 4699999999999999999998876 34556666
No 413
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.18 E-value=0.1 Score=59.07 Aligned_cols=86 Identities=15% Similarity=0.167 Sum_probs=48.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCC-ccHHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPEN-EDKVRRAGRLSEMLK 240 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~l~ 240 (929)
..++.|.|.+|+|||||+.+++..... .-..++|++..+. ..++. .-++.++.....- .........+.+.+.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~---~g~~vlYvs~Ees--~~qi~-~ra~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAA---AGGKVLYVSGEES--ASQIK-LRAERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEcccc--HHHHH-HHHHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 469999999999999999999887632 2245788876543 33332 2244444321100 000001223333333
Q ss_pred hcCcEEEEEecCC
Q 042574 241 AKAKFVLILDDMW 253 (929)
Q Consensus 241 ~~~~~LlvlDdv~ 253 (929)
+.+.-++|+|.+.
T Consensus 154 ~~~~~lVVIDSIq 166 (446)
T PRK11823 154 EEKPDLVVIDSIQ 166 (446)
T ss_pred hhCCCEEEEechh
Confidence 3456677887764
No 414
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.17 E-value=0.034 Score=52.83 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+|.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998764
No 415
>PRK14530 adenylate kinase; Provisional
Probab=94.15 E-value=0.041 Score=55.91 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+.|.|+|++|+||||+|+.++..+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998876
No 416
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.06 E-value=0.007 Score=58.09 Aligned_cols=73 Identities=19% Similarity=0.254 Sum_probs=54.9
Q ss_pred CcccCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchhhhcCCccEEEEecCcch
Q 042574 730 EPIVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDSI 809 (929)
Q Consensus 730 ~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~l 809 (929)
..+..++.++.|.+.+|....+ .|+..++...++|+.|+|++|+.+++- -+..+..+++|+.|+|.+.+.+
T Consensus 119 e~L~~l~~i~~l~l~~ck~~dD--------~~L~~l~~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 119 EHLRDLRSIKSLSLANCKYFDD--------WCLERLGGLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HHHhccchhhhheeccccchhh--------HHHHHhcccccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhh
Confidence 3455667788888888877663 356666555459999999999999984 3455778889999999887655
Q ss_pred hh
Q 042574 810 KE 811 (929)
Q Consensus 810 ~~ 811 (929)
..
T Consensus 190 ~~ 191 (221)
T KOG3864|consen 190 AN 191 (221)
T ss_pred hc
Confidence 43
No 417
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.06 E-value=0.17 Score=47.74 Aligned_cols=29 Identities=34% Similarity=0.508 Sum_probs=25.6
Q ss_pred CCCeeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 159 GDKVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 159 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
.....+|-+.|.+|.||||+|.+++..+.
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~ 48 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLF 48 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 44567999999999999999999999883
No 418
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=94.04 E-value=0.091 Score=52.08 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=33.2
Q ss_pred HHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEE
Q 042574 151 ERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT 200 (929)
Q Consensus 151 ~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 200 (929)
...++.+. +..+|.+.|++|+|||.||.+.+-+. ...+.|+.++++.
T Consensus 10 ~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~R 56 (205)
T PF02562_consen 10 KFALDALL--NNDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITR 56 (205)
T ss_dssp HHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE
T ss_pred HHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEe
Confidence 34445554 56799999999999999999998876 3447888888874
No 419
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.04 E-value=0.1 Score=58.03 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+-|.++|++|+|||++|+.++...
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHh
Confidence 568999999999999999998765
No 420
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.03 E-value=0.05 Score=54.61 Aligned_cols=58 Identities=28% Similarity=0.340 Sum_probs=36.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEE-------EECCCCCHHHHH--HHHHHHhcC
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV-------TVSQPLDLIKLQ--TEIATALKQ 220 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv-------~~s~~~~~~~~~--~~i~~~l~~ 220 (929)
..+|.++||+|+||||+.+.++.+....+. -..++-. ...-+.|+++.. ++..++.+.
T Consensus 19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~-ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~L 85 (366)
T KOG1532|consen 19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKT-PPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQL 85 (366)
T ss_pred CcEEEEEecCCCCchhHHHHHHHHHhhccC-CCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCC
Confidence 568899999999999999999998743322 1223332 222334565543 456666544
No 421
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.079 Score=52.81 Aligned_cols=71 Identities=24% Similarity=0.341 Sum_probs=45.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLK 240 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 240 (929)
.++-|..+|++|.|||-+|++|+|+. ...|-.++ -.++.+.. ..........+.+.-+
T Consensus 210 ppkgvllygppgtgktl~aravanrt---dacfirvi-------------gselvqky------vgegarmvrelf~mar 267 (435)
T KOG0729|consen 210 PPKGVLLYGPPGTGKTLCARAVANRT---DACFIRVI-------------GSELVQKY------VGEGARMVRELFEMAR 267 (435)
T ss_pred CCCceEEeCCCCCchhHHHHHHhccc---CceEEeeh-------------hHHHHHHH------hhhhHHHHHHHHHHhc
Confidence 36789999999999999999999974 23342111 11111111 1123344555555555
Q ss_pred hcCcEEEEEecCC
Q 042574 241 AKAKFVLILDDMW 253 (929)
Q Consensus 241 ~~~~~LlvlDdv~ 253 (929)
.+|-+++++|.++
T Consensus 268 tkkaciiffdeid 280 (435)
T KOG0729|consen 268 TKKACIIFFDEID 280 (435)
T ss_pred ccceEEEEeeccc
Confidence 6678999999986
No 422
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.02 E-value=0.29 Score=54.69 Aligned_cols=92 Identities=23% Similarity=0.348 Sum_probs=56.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCC-CHHHHHHHHHHHhcCCC------CCCccHHH---
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQTEIATALKQSL------PENEDKVR--- 230 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~--- 230 (929)
.-..++|.|.+|+|||||+.++....... +-+.++++-+++.. .+.++.+++...-.... ..+.....
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~--~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKE--HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc--CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 34689999999999999999987765322 22467788887765 34556666654311110 01111111
Q ss_pred ---HHHHHHHHHH--hcCcEEEEEecCCC
Q 042574 231 ---RAGRLSEMLK--AKAKFVLILDDMWE 254 (929)
Q Consensus 231 ---~~~~l~~~l~--~~~~~LlvlDdv~~ 254 (929)
.+..+.++++ +++.+||++||+..
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 1223445552 58999999999954
No 423
>PRK13947 shikimate kinase; Provisional
Probab=94.01 E-value=0.043 Score=53.48 Aligned_cols=23 Identities=39% Similarity=0.541 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
-|.|+|++|+||||+|+.+++.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999986
No 424
>PRK13949 shikimate kinase; Provisional
Probab=94.01 E-value=0.045 Score=53.04 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.|.|+|++|+||||+++.++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999986
No 425
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.99 E-value=0.29 Score=52.38 Aligned_cols=88 Identities=13% Similarity=0.247 Sum_probs=50.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCC-CCHHHHHHHHHHHhcCC-------CCCCccHH----
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LDLIKLQTEIATALKQS-------LPENEDKV---- 229 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~---- 229 (929)
...++|+|..|+|||||++.+..... -+..+..-++.. .++.++.......-+.. ..+.....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~-----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT-----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC-----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 46899999999999999998887541 233444555543 34555555554432211 11111111
Q ss_pred -HHHHHHHHHHH-hcCcEEEEEecCCC
Q 042574 230 -RRAGRLSEMLK-AKAKFVLILDDMWE 254 (929)
Q Consensus 230 -~~~~~l~~~l~-~~~~~LlvlDdv~~ 254 (929)
..+..+.+++. +++.+|+++||+..
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 11122333332 58899999999854
No 426
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.99 E-value=0.37 Score=51.83 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=24.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
...+|+++|++|+||||++.+++....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 468999999999999999999998873
No 427
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.98 E-value=0.4 Score=49.23 Aligned_cols=40 Identities=25% Similarity=0.234 Sum_probs=30.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCC
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 204 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 204 (929)
..++.|.|.+|+||||+|.++...... ....++|++....
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~---~g~~~~~is~e~~ 59 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLR---DGDPVIYVTTEES 59 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEEccCC
Confidence 579999999999999999998765422 2346788876443
No 428
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.97 E-value=0.093 Score=61.54 Aligned_cols=75 Identities=13% Similarity=0.145 Sum_probs=53.4
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHh
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATAL 218 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 218 (929)
..++|+ +..++.+...+... +.+.++|++|+||||+|+.+.+... ...++..+|..- ...+...+++.++.++
T Consensus 31 ~~vigq--~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~--~~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 31 DQVIGQ--EHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP--KEELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred HHcCCh--HHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC--hHhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 678887 56666666666554 4699999999999999999998762 234677788665 3345666666666555
Q ss_pred cC
Q 042574 219 KQ 220 (929)
Q Consensus 219 ~~ 220 (929)
+.
T Consensus 104 G~ 105 (637)
T PRK13765 104 GK 105 (637)
T ss_pred CH
Confidence 43
No 429
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.95 E-value=0.18 Score=56.07 Aligned_cols=88 Identities=15% Similarity=0.311 Sum_probs=49.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCC-CCHHHHHHHHHHHhcCC-------CCCCccHHH---
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LDLIKLQTEIATALKQS-------LPENEDKVR--- 230 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~--- 230 (929)
...++|+|..|+|||||++.+..... . +..+.+.+++. ..+.++....+..-+.. ..++.....
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~----~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD----A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 46899999999999999988887541 1 23333434443 33444555443332111 111111111
Q ss_pred --HHHHHHHHHH-hcCcEEEEEecCCC
Q 042574 231 --RAGRLSEMLK-AKAKFVLILDDMWE 254 (929)
Q Consensus 231 --~~~~l~~~l~-~~~~~LlvlDdv~~ 254 (929)
.+..+.+++. +++.+||++||+..
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr 241 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTR 241 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1223444443 57899999999854
No 430
>PRK08149 ATP synthase SpaL; Validated
Probab=93.94 E-value=0.27 Score=54.61 Aligned_cols=89 Identities=15% Similarity=0.272 Sum_probs=52.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCC-CHHHHHHHHHHHhcCC-------CCCCccHH---
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQTEIATALKQS-------LPENEDKV--- 229 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~--- 229 (929)
....++|+|..|+|||||+..++... .-+.++...+.... ++.++..+........ ..+.....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~-----~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS-----EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC-----CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 34689999999999999999888753 22344445555443 4555555555432211 11111111
Q ss_pred --HHHHHHHHHHH-hcCcEEEEEecCCC
Q 042574 230 --RRAGRLSEMLK-AKAKFVLILDDMWE 254 (929)
Q Consensus 230 --~~~~~l~~~l~-~~~~~LlvlDdv~~ 254 (929)
..+..+.+++. +++++||++||+..
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~DslTr 252 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSMTR 252 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccchHH
Confidence 11223334442 58999999999954
No 431
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.93 E-value=0.17 Score=53.87 Aligned_cols=48 Identities=21% Similarity=0.278 Sum_probs=36.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCC-HHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQTEI 214 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i 214 (929)
-..++|.|..|+|||+|++++.+.. +-+.++++-+++..+ +.+++.++
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~-----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYS-----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCC-----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 4589999999999999999988853 345788898887653 44555554
No 432
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.92 E-value=0.042 Score=54.11 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 589999999999999999998854
No 433
>PRK14527 adenylate kinase; Provisional
Probab=93.91 E-value=0.055 Score=53.81 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...+|.|+|++|+||||+|+.++..+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998876
No 434
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.90 E-value=0.027 Score=33.48 Aligned_cols=20 Identities=30% Similarity=0.634 Sum_probs=11.4
Q ss_pred CCCEEEccCCCCcccccccc
Q 042574 593 ALQYLDLERTWIEEVPEGME 612 (929)
Q Consensus 593 ~L~~L~l~~~~i~~lp~~i~ 612 (929)
+|++|++++|.++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35566666666666655543
No 435
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.88 E-value=0.1 Score=55.67 Aligned_cols=48 Identities=25% Similarity=0.271 Sum_probs=35.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQT 212 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 212 (929)
.+++.+.|.||+||||+|.+.+-.... ....+.-|+.....++.+++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~---~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAE---SGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHH---cCCcEEEEEeCCCCchHhhhc
Confidence 478999999999999999997766532 224477777766666666554
No 436
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.87 E-value=0.025 Score=68.18 Aligned_cols=181 Identities=15% Similarity=0.167 Sum_probs=85.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH-hhhcCCCcEEEEEEECCC--CC-HHHHH------HHHHHHhcCCCCCCccHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL-QKETNKFNVVIWVTVSQP--LD-LIKLQ------TEIATALKQSLPENEDKVR 230 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~-~~~~~~f~~~~wv~~s~~--~~-~~~~~------~~i~~~l~~~~~~~~~~~~ 230 (929)
+..+++|+|+.|.||||+.+.+.... ....+ .+|.+... .. ...+. +.+.+.+.. -.....
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G-----~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LSt----fS~~m~ 391 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSG-----IPIPANEHSEIPYFEEIFADIGDEQSIEQNLST----FSGHMK 391 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhC-----CCccCCccccccchhheeeecChHhHHhhhhhH----HHHHHH
Confidence 34799999999999999999987662 11111 12222111 00 00110 111111100 001111
Q ss_pred HHHHHHHHHHhcCcEEEEEecCCCcCCcc-------ccccCCCCCCCCcEEEEEeCcccccccCCcce----EecccCCH
Q 042574 231 RAGRLSEMLKAKAKFVLILDDMWEAFPLE-------EVGIPEPSEENGCKLVITTRSLGVSRSMDCKE----IGVELLSQ 299 (929)
Q Consensus 231 ~~~~l~~~l~~~~~~LlvlDdv~~~~~~~-------~l~~~~~~~~~gs~ilvTtR~~~v~~~~~~~~----~~l~~L~~ 299 (929)
....+.... ..+-|+++|+.-...+.. .+...+. ..|+.+|+||-..++........ ..+. ++.
T Consensus 392 ~~~~il~~~--~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~ 466 (771)
T TIGR01069 392 NISAILSKT--TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE 466 (771)
T ss_pred HHHHHHHhc--CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC
Confidence 222233332 468999999986533311 1112222 35789999999877643221111 1121 111
Q ss_pred HHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHHhhhcCCCChhHHHHHHHHHhh
Q 042574 300 EEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVASCMRGVDEIHEWRNALNELRG 364 (929)
Q Consensus 300 ~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~l~~l~~ 364 (929)
+ ... |..++... .+. ...|-.|++++ |+|-.+..-|..+.+. ...+...++.++..
T Consensus 467 ~-~l~-p~Ykl~~G---~~g--~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~~L~~ 522 (771)
T TIGR01069 467 E-TLS-PTYKLLKG---IPG--ESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIEKLSA 522 (771)
T ss_pred C-CCc-eEEEECCC---CCC--CcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 1 000 11111111 011 23466677776 7888887777766542 33455666665543
No 437
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.86 E-value=0.18 Score=55.92 Aligned_cols=94 Identities=15% Similarity=0.197 Sum_probs=57.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhh----------hcCCCcEEEEEEECCCCCHHHHHHHHHHHhc-CC-------C
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQK----------ETNKFNVVIWVTVSQPLDLIKLQTEIATALK-QS-------L 222 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~----------~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-~~-------~ 222 (929)
....++|.|.+|+|||||+.++.+.... ..+.-..++++-+++.....+.+...+..-+ .. .
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 3467999999999999999999887521 0011115677778887555555555554433 11 0
Q ss_pred CCCccHHH-----HHHHHHHHHH--hcCcEEEEEecCCC
Q 042574 223 PENEDKVR-----RAGRLSEMLK--AKAKFVLILDDMWE 254 (929)
Q Consensus 223 ~~~~~~~~-----~~~~l~~~l~--~~~~~LlvlDdv~~ 254 (929)
.++..... .+..+.+.++ +++++|+++||+..
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 11111111 1223455665 47999999999854
No 438
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.86 E-value=0.13 Score=53.83 Aligned_cols=36 Identities=31% Similarity=0.329 Sum_probs=29.7
Q ss_pred HHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 151 ERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 151 ~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
++.-+.+...+..+|.|.|.+|+|||||+..+.+..
T Consensus 93 ~~~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 93 ERNRARFAARKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred HHHHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334445556678999999999999999999999886
No 439
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.84 E-value=0.048 Score=51.31 Aligned_cols=20 Identities=40% Similarity=0.611 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEIN 183 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~ 183 (929)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999887
No 440
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.82 E-value=0.065 Score=54.10 Aligned_cols=31 Identities=23% Similarity=0.351 Sum_probs=27.0
Q ss_pred HhcCCCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 156 DLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 156 ~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+...++++|+++|..|+|||||..++....
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~ 46 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNL 46 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3455679999999999999999999998875
No 441
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.81 E-value=0.08 Score=55.63 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=34.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCC
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 204 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 204 (929)
..+++.|+|.+|+|||++|.++..... ..+..++||+..+.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~---~~ge~vlyvs~~e~ 62 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGA---REGEPVLYVSTEES 62 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHH---hcCCcEEEEEecCC
Confidence 468999999999999999999988763 34778999988765
No 442
>COG4240 Predicted kinase [General function prediction only]
Probab=93.80 E-value=0.29 Score=47.99 Aligned_cols=84 Identities=12% Similarity=0.060 Sum_probs=50.6
Q ss_pred cCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCC----CCCccHHHHHH
Q 042574 158 MGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSL----PENEDKVRRAG 233 (929)
Q Consensus 158 ~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~----~~~~~~~~~~~ 233 (929)
..+++-+++|.|+-|+||||++..+++.+. .++. ..+...+..+-+-...-+-.++++...-. ....-......
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L~-~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlgl 123 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLA-AKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGL 123 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHHH-Hhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHH
Confidence 345678999999999999999999999984 3332 35666665554433444445555542211 11122233444
Q ss_pred HHHHHHHhcC
Q 042574 234 RLSEMLKAKA 243 (929)
Q Consensus 234 ~l~~~l~~~~ 243 (929)
.+.+.+.+++
T Consensus 124 nVLnai~~g~ 133 (300)
T COG4240 124 NVLNAIARGG 133 (300)
T ss_pred HHHHHHhcCC
Confidence 5556665554
No 443
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.79 E-value=0.079 Score=52.29 Aligned_cols=36 Identities=31% Similarity=0.406 Sum_probs=28.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEE
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVT 200 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~ 200 (929)
.++|.|+|+.|+|||||++++.... ...|...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeec
Confidence 3789999999999999999999976 35565444443
No 444
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.75 E-value=0.056 Score=52.18 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=20.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHh
Q 042574 165 IGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 165 v~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
|.|.|.+|+|||||++.+++.+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 78999999999999999999873
No 445
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.74 E-value=0.16 Score=57.56 Aligned_cols=39 Identities=28% Similarity=0.375 Sum_probs=30.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECC
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 203 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 203 (929)
-.++.|.|.+|+|||||+.+++..... . -..++|++..+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~-~--g~kvlYvs~EE 132 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAK-N--QMKVLYVSGEE 132 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHh-c--CCcEEEEECcC
Confidence 579999999999999999999887632 1 23578887654
No 446
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=93.70 E-value=0.23 Score=55.70 Aligned_cols=92 Identities=14% Similarity=0.199 Sum_probs=56.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhc--CCCcEEEEEEECCCC-CHHHHHHHHHHHhcCC-------CCCCccHH--
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKET--NKFNVVIWVTVSQPL-DLIKLQTEIATALKQS-------LPENEDKV-- 229 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~-- 229 (929)
-..++|.|..|+|||||+.++.+...... .. ..++++-+++.. .+.++.+.+...-... ..+.....
T Consensus 141 GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~-~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~ 219 (458)
T TIGR01041 141 GQKLPIFSGSGLPHNELAAQIARQATVRGEESE-FAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERI 219 (458)
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCc-eEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 46799999999999999999888652110 11 157777777765 4455666555332111 01111111
Q ss_pred ---HHHHHHHHHHH--hcCcEEEEEecCCC
Q 042574 230 ---RRAGRLSEMLK--AKAKFVLILDDMWE 254 (929)
Q Consensus 230 ---~~~~~l~~~l~--~~~~~LlvlDdv~~ 254 (929)
-.+..+.+.++ +++++||++||+..
T Consensus 220 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR 249 (458)
T TIGR01041 220 VTPRMALTAAEYLAFEKDMHVLVILTDMTN 249 (458)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcChhH
Confidence 12234556665 58899999999854
No 447
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.69 E-value=7.8 Score=43.91 Aligned_cols=52 Identities=15% Similarity=0.200 Sum_probs=36.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
..++.|-|.+|+|||++|..++...... .-..++|++.. .+..++...++..
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~--~g~~v~~fSlE--m~~~~l~~Rl~~~ 245 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALR--EGKPVLFFSLE--MSAEQLGERLLAS 245 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECC--CCHHHHHHHHHHH
Confidence 3588999999999999999998765211 22346666543 4566666666554
No 448
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.69 E-value=0.084 Score=56.49 Aligned_cols=44 Identities=23% Similarity=0.327 Sum_probs=30.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIK 209 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 209 (929)
+++.+.|.||+||||+|.+.+-.... .+ ..+.-|+.....++.+
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~-~G--~rtLlvS~Dpa~~L~d 45 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR-RG--KRTLLVSTDPAHSLSD 45 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH-TT--S-EEEEESSTTTHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh-CC--CCeeEeecCCCccHHH
Confidence 68999999999999999988887743 22 3355555544444333
No 449
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.68 E-value=0.058 Score=47.14 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEIN 183 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~ 183 (929)
-..++|+|+.|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999999875
No 450
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.67 E-value=0.34 Score=54.19 Aligned_cols=94 Identities=14% Similarity=0.177 Sum_probs=54.6
Q ss_pred CeeEEEEEcCCCChHHHHH-HHHHHHHhh----hcCCCcEEEEEEECCCCCHHHHHHHHHHHhc-CCC-------CCCcc
Q 042574 161 KVTKIGVWGMGGIGKTTIM-KEINNRLQK----ETNKFNVVIWVTVSQPLDLIKLQTEIATALK-QSL-------PENED 227 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~----~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~-~~~-------~~~~~ 227 (929)
....++|.|..|+|||||| -.+.+.... ....-+.++++.+++..+...-+.+.+++-+ ... .++..
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 3467999999999999997 556665411 1123457889999887654333333333333 111 11111
Q ss_pred HHH-----HHHHHHHHHH-hcCcEEEEEecCCC
Q 042574 228 KVR-----RAGRLSEMLK-AKAKFVLILDDMWE 254 (929)
Q Consensus 228 ~~~-----~~~~l~~~l~-~~~~~LlvlDdv~~ 254 (929)
..+ .+..+.+.++ +++.+|+|+||+..
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 111 1223334443 57899999999854
No 451
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=93.66 E-value=0.34 Score=54.42 Aligned_cols=92 Identities=21% Similarity=0.310 Sum_probs=56.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCC-HHHHHHHHHHHhcCC--------------CCCC
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQTEIATALKQS--------------LPEN 225 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~--------------~~~~ 225 (929)
.-..++|.|.+|+|||||+.++...... .+-+.++++-+++... +.++...+...-... ..++
T Consensus 160 kGQR~gIfgg~GvGKs~L~~~~~~~~~~--~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~ 237 (494)
T CHL00060 160 RGGKIGLFGGAGVGKTVLIMELINNIAK--AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNE 237 (494)
T ss_pred cCCEEeeecCCCCChhHHHHHHHHHHHH--hcCCeEEEEEeccCchHHHHHHHHHHhcCccccCcccccceEEEEECCCC
Confidence 3468999999999999999998877421 2237788888887653 456666555411100 0011
Q ss_pred ccHH-----HHHHHHHHHHHh-c-CcEEEEEecCCC
Q 042574 226 EDKV-----RRAGRLSEMLKA-K-AKFVLILDDMWE 254 (929)
Q Consensus 226 ~~~~-----~~~~~l~~~l~~-~-~~~LlvlDdv~~ 254 (929)
.... ..+..+.++++. + +.+||++||+..
T Consensus 238 p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR 273 (494)
T CHL00060 238 PPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFR 273 (494)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchH
Confidence 1111 122345566643 4 499999999954
No 452
>PRK14529 adenylate kinase; Provisional
Probab=93.66 E-value=0.23 Score=50.20 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=20.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 042574 165 IGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 165 v~I~G~gGiGKTtLa~~v~~~~ 186 (929)
|.|.|++|+||||+|+.++..+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~ 24 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKY 24 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999999887
No 453
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.65 E-value=0.34 Score=50.17 Aligned_cols=23 Identities=17% Similarity=0.335 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+..|+|++|+|||+||..++-..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 56899999999999999998765
No 454
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.64 E-value=0.054 Score=54.01 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+++|+|.+|+|||||++.+.--.
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhccc
Confidence 4689999999999999999987754
No 455
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.63 E-value=0.1 Score=55.61 Aligned_cols=48 Identities=25% Similarity=0.309 Sum_probs=35.2
Q ss_pred ccccccch-HHHHHHHHHHhcCCC--eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKT-KKVVERIWEDLMGDK--VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~-~~~~~~l~~~l~~~~--~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+||+.. .++..-+++.+.++. .+.|.|.|++|.|||+||..++..+
T Consensus 24 ~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eL 74 (398)
T PF06068_consen 24 DGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKEL 74 (398)
T ss_dssp TTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHC
T ss_pred ccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHh
Confidence 67999743 334555667776665 6899999999999999999999988
No 456
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.63 E-value=0.058 Score=51.48 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=20.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 042574 165 IGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 165 v~I~G~gGiGKTtLa~~v~~~~ 186 (929)
|.|+|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 457
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.58 E-value=0.05 Score=50.66 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998864
No 458
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.57 E-value=0.21 Score=58.88 Aligned_cols=74 Identities=15% Similarity=0.207 Sum_probs=46.8
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHh
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATAL 218 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 218 (929)
.+++|+ ++.++.+...+.... -+.++|++|+||||+|+.+.+... ...|..++++.- ...+...++..++.++
T Consensus 18 ~~viG~--~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~--~~~~~~~~~~~n-~~~~~~~~~~~v~~~~ 90 (608)
T TIGR00764 18 DQVIGQ--EEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLP--DEELEDILVYPN-PEDPNMPRIVEVPAGE 90 (608)
T ss_pred hhccCH--HHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcC--chhheeEEEEeC-CCCCchHHHHHHHHhh
Confidence 678887 555555655555543 455999999999999999998773 223443443332 2224445566666555
Q ss_pred c
Q 042574 219 K 219 (929)
Q Consensus 219 ~ 219 (929)
+
T Consensus 91 g 91 (608)
T TIGR00764 91 G 91 (608)
T ss_pred c
Confidence 4
No 459
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.57 E-value=0.057 Score=54.45 Aligned_cols=25 Identities=32% Similarity=0.344 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|+|+|++|+||||||+.++...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998865
No 460
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.57 E-value=0.099 Score=49.76 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
|++|+|+.|+|||||+.++.....
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~ 24 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALK 24 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999873
No 461
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.56 E-value=0.087 Score=56.80 Aligned_cols=48 Identities=17% Similarity=0.329 Sum_probs=35.5
Q ss_pred ccccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 137 TTATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 137 ~~~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+-..++|+ +..+..+.-.+.+.+..=+.+.|.+|+||||+|+.+..-.
T Consensus 6 ~f~~i~Gq--~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 6 PFSAIVGQ--EEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CHHHhCCH--HHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 34678997 5556656644543444559999999999999999997765
No 462
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.56 E-value=0.067 Score=53.12 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998874
No 463
>PRK05922 type III secretion system ATPase; Validated
Probab=93.56 E-value=0.38 Score=53.48 Aligned_cols=89 Identities=18% Similarity=0.309 Sum_probs=50.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCC-CHHHHHHHHHHHhcCCC------CCCccHHH---
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQTEIATALKQSL------PENEDKVR--- 230 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~--- 230 (929)
....++|+|..|+|||||++.+.... ..+...++-++... .+.+.+.+......... ..+.....
T Consensus 156 ~GqrigI~G~nG~GKSTLL~~Ia~~~-----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 156 KGQRIGVFSEPGSGKSSLLSTIAKGS-----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccC-----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 34679999999999999999988753 22334444444432 33444444443322211 01111111
Q ss_pred ---HHHHHHHHHH-hcCcEEEEEecCCC
Q 042574 231 ---RAGRLSEMLK-AKAKFVLILDDMWE 254 (929)
Q Consensus 231 ---~~~~l~~~l~-~~~~~LlvlDdv~~ 254 (929)
.+..+.++++ +++++||++||+..
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR 258 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSR 258 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 1223444443 58999999999954
No 464
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.52 E-value=0.35 Score=53.77 Aligned_cols=89 Identities=12% Similarity=0.263 Sum_probs=53.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCC-HHHHHHHHHHHhcCCC------CCCccHHHH--
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQTEIATALKQSL------PENEDKVRR-- 231 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~~------~~~~~~~~~-- 231 (929)
....++|.|..|+|||||.+.+++.. .-+.++++-+++... +.++....+..-+... ..+.....+
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 34689999999999999999998864 235678888877653 4444434332211100 111111111
Q ss_pred ----HHHHHHHHH-hcCcEEEEEecCCC
Q 042574 232 ----AGRLSEMLK-AKAKFVLILDDMWE 254 (929)
Q Consensus 232 ----~~~l~~~l~-~~~~~LlvlDdv~~ 254 (929)
+..+.++++ +++++|+++||+..
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslTR 263 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVTR 263 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhH
Confidence 123344443 58999999999954
No 465
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.52 E-value=0.45 Score=49.31 Aligned_cols=88 Identities=17% Similarity=0.208 Sum_probs=50.5
Q ss_pred eeEEEEEcCCCChHHHHH-HHHHHHHhhhcCCCcE-EEEEEECCCC-CHHHHHHHHHHHhcCC-------CCCCccHHH-
Q 042574 162 VTKIGVWGMGGIGKTTIM-KEINNRLQKETNKFNV-VIWVTVSQPL-DLIKLQTEIATALKQS-------LPENEDKVR- 230 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~-~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~- 230 (929)
-..++|.|.+|+|||+|| ..+.+.. .-+. ++++-+++.. .+.++.+++...-... ..++.....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~-----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK-----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc-----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 467999999999999996 5555532 2233 3677777764 3455555555321110 111111111
Q ss_pred ----HHHHHHHHHH-hcCcEEEEEecCCC
Q 042574 231 ----RAGRLSEMLK-AKAKFVLILDDMWE 254 (929)
Q Consensus 231 ----~~~~l~~~l~-~~~~~LlvlDdv~~ 254 (929)
.+..+.+.+. +++.+|+++||+..
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslTr 172 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLSK 172 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChHH
Confidence 1123333333 47899999999954
No 466
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.50 E-value=0.048 Score=52.70 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=19.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 042574 165 IGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 165 v~I~G~gGiGKTtLa~~v~~~~ 186 (929)
|.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998875
No 467
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.49 E-value=0.075 Score=53.18 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=24.3
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 160 DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 160 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
....+|+|+|++|+||||||+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999999876
No 468
>PRK13975 thymidylate kinase; Provisional
Probab=93.48 E-value=0.068 Score=53.46 Aligned_cols=24 Identities=38% Similarity=0.418 Sum_probs=22.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+|.|.|+.|+||||+|+.+++.+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999987
No 469
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.47 E-value=0.076 Score=49.45 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.++|.|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999998776654
No 470
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.43 E-value=0.059 Score=53.35 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.++.|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997754
No 471
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.40 E-value=0.068 Score=48.32 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=20.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 042574 165 IGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 165 v~I~G~gGiGKTtLa~~v~~~~ 186 (929)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998764
No 472
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.19 Score=51.72 Aligned_cols=70 Identities=14% Similarity=0.245 Sum_probs=43.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKA 241 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (929)
+..++|||++|.|||-+|+.|+... .-.| +.+..+ +|... ...+....++...+....
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~m---g~nf---l~v~ss----------~lv~k------yiGEsaRlIRemf~yA~~ 223 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATM---GVNF---LKVVSS----------ALVDK------YIGESARLIRDMFRYARE 223 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhc---CCce---EEeeHh----------hhhhh------hcccHHHHHHHHHHHHhh
Confidence 5789999999999999999999876 2223 112111 11110 011233444445555445
Q ss_pred cCcEEEEEecCC
Q 042574 242 KAKFVLILDDMW 253 (929)
Q Consensus 242 ~~~~LlvlDdv~ 253 (929)
..++.|.+||++
T Consensus 224 ~~pciifmdeiD 235 (388)
T KOG0651|consen 224 VIPCIIFMDEID 235 (388)
T ss_pred hCceEEeehhhh
Confidence 568999999986
No 473
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.37 E-value=0.067 Score=52.07 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=22.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..|.|+|+.|+||||+|+.+....
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 469999999999999999999875
No 474
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.35 E-value=0.065 Score=51.73 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=17.5
Q ss_pred EEEEcCCCChHHHHHHHHHHH
Q 042574 165 IGVWGMGGIGKTTIMKEINNR 185 (929)
Q Consensus 165 v~I~G~gGiGKTtLa~~v~~~ 185 (929)
|+|.|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 899999999999999998865
No 475
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.33 E-value=0.12 Score=50.81 Aligned_cols=44 Identities=18% Similarity=0.318 Sum_probs=29.4
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+++|. +..+..+.-+..+. .=|.++|++|+|||++|+.+..-+
T Consensus 3 ~dI~GQ--e~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 3 SDIVGQ--EEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CCSSST--HHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhcCc--HHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHhC
Confidence 357887 44444444444443 579999999999999999987654
No 476
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.32 E-value=0.11 Score=55.07 Aligned_cols=39 Identities=31% Similarity=0.493 Sum_probs=28.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCC
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 204 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 204 (929)
+.|+|+|-||+||||+|..++..+.. . .+ .+.-|+....
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~-~-G~-~VlliD~D~q 39 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAE-M-GK-KVMIVGCDPK 39 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHH-C-CC-eEEEEeCCCC
Confidence 47899999999999999999998843 2 23 3555554433
No 477
>PLN02200 adenylate kinase family protein
Probab=93.31 E-value=0.074 Score=54.55 Aligned_cols=25 Identities=28% Similarity=0.167 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|.|.|++|+||||+|+.++..+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998765
No 478
>PRK13695 putative NTPase; Provisional
Probab=93.25 E-value=0.12 Score=50.39 Aligned_cols=34 Identities=35% Similarity=0.559 Sum_probs=25.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEE
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 199 (929)
.|+|+|.+|+|||||++.+++.... ..+....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~--~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE--EGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEE
Confidence 4789999999999999999988632 234444344
No 479
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.24 E-value=0.32 Score=54.08 Aligned_cols=88 Identities=15% Similarity=0.296 Sum_probs=50.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCC-CHHHHHHHHHHHhcC-------CCCCCccHHH---
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQTEIATALKQ-------SLPENEDKVR--- 230 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~-------~~~~~~~~~~--- 230 (929)
...++|+|..|+|||||++.+.... .-+..+.+.+++.. .+.++.......-.. ...+......
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~-----~~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a 211 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYT-----EADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRA 211 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC-----CCCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHH
Confidence 4679999999999999998888753 12344555566543 344444444332111 0111111111
Q ss_pred --HHHHHHHHHH-hcCcEEEEEecCCC
Q 042574 231 --RAGRLSEMLK-AKAKFVLILDDMWE 254 (929)
Q Consensus 231 --~~~~l~~~l~-~~~~~LlvlDdv~~ 254 (929)
.+..+.+++. +++++|+++||+..
T Consensus 212 ~~~a~tiAEyfr~~G~~Vll~~Dsltr 238 (411)
T TIGR03496 212 AFYATAIAEYFRDQGKDVLLLMDSLTR 238 (411)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEeChHH
Confidence 1123344443 57899999999853
No 480
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.23 E-value=0.19 Score=50.21 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
+|+|.|+.|+||||+++.+.+.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999873
No 481
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=93.20 E-value=0.21 Score=49.84 Aligned_cols=25 Identities=36% Similarity=0.397 Sum_probs=23.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
..|+|.|..|+||||+|+.+.+.+.
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999873
No 482
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.18 E-value=0.083 Score=50.52 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..++.|.|++|+|||||++++..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999999998864
No 483
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.14 E-value=0.13 Score=59.15 Aligned_cols=129 Identities=16% Similarity=0.144 Sum_probs=68.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcC-----CCcEEEEEEECC-CC----CH------------HHHHHHHHHHhc
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETN-----KFNVVIWVTVSQ-PL----DL------------IKLQTEIATALK 219 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----~f~~~~wv~~s~-~~----~~------------~~~~~~i~~~l~ 219 (929)
...|+|+|+.|+|||||.+.+........+ .--.+.|+.-.. .. ++ ....+..+..++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 457999999999999999999776532211 111233332211 10 11 122233333333
Q ss_pred CCCCCC------ccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC------ccccccCCCCCCCCcEEEEEeCcccccccC
Q 042574 220 QSLPEN------EDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP------LEEVGIPEPSEENGCKLVITTRSLGVSRSM 287 (929)
Q Consensus 220 ~~~~~~------~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~------~~~l~~~~~~~~~gs~ilvTtR~~~v~~~~ 287 (929)
-+.... -+.-++.+-....+.-.++-+||||.=-+.-+ +++....++ | .||+.|-++......
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~----G-tvl~VSHDr~Fl~~v 502 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE----G-TVLLVSHDRYFLDRV 502 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC----C-eEEEEeCCHHHHHhh
Confidence 322111 12233444444444556899999998655433 333333332 4 578888887766555
Q ss_pred CcceEecc
Q 042574 288 DCKEIGVE 295 (929)
Q Consensus 288 ~~~~~~l~ 295 (929)
....+.+.
T Consensus 503 a~~i~~~~ 510 (530)
T COG0488 503 ATRIWLVE 510 (530)
T ss_pred cceEEEEc
Confidence 43334443
No 484
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.14 E-value=0.75 Score=47.69 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=35.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIA 215 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 215 (929)
..++.|.|.+|+|||++|.+++.+.... +-..++|++... +..++...++
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~--~g~~vly~s~E~--~~~~~~~r~~ 62 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKK--QGKPVLFFSLEM--SKEQLLQRLL 62 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCceEEEeCCC--CHHHHHHHHH
Confidence 3689999999999999999988776322 134577777655 4455555554
No 485
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.14 E-value=0.15 Score=61.68 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=30.4
Q ss_pred ccccccch--HHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKT--KKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~--~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..++|++. ....+++..+.. ...-|.|+|..|+|||++|+.+.+..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~--~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ--SDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC--CCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 46888742 222223333222 23468999999999999999998764
No 486
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.13 E-value=0.19 Score=55.51 Aligned_cols=40 Identities=25% Similarity=0.382 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 148 KVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 148 ~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
...+.+++.+.......+.|.|+||+|||++.+.+.+...
T Consensus 8 ~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 8 RVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred HHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 4456666777666778999999999999999999999873
No 487
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.10 E-value=0.5 Score=49.30 Aligned_cols=89 Identities=17% Similarity=0.231 Sum_probs=48.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCC-CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQTEIATALKQSLPENEDKVRRAGRLSEML 239 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 239 (929)
...+++++|.+|+||||+++.+...... .-..+.+++..... .....++..++.++.+.....+..... ...+.+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~---~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~-~~l~~l 149 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHG---KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMT-RALTYF 149 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHH-HHHHHH
Confidence 3479999999999999999999887632 12345566554221 122222333444443322222332222 223333
Q ss_pred Hh-cCcEEEEEecCC
Q 042574 240 KA-KAKFVLILDDMW 253 (929)
Q Consensus 240 ~~-~~~~LlvlDdv~ 253 (929)
.+ .+.=++++|..-
T Consensus 150 ~~~~~~D~ViIDt~G 164 (270)
T PRK06731 150 KEEARVDYILIDTAG 164 (270)
T ss_pred HhcCCCCEEEEECCC
Confidence 22 245677888873
No 488
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=93.10 E-value=1.8 Score=48.34 Aligned_cols=97 Identities=19% Similarity=0.184 Sum_probs=53.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEE---EEEECC----C-----------------CCHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVI---WVTVSQ----P-----------------LDLIKLQTEIATA 217 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~---wv~~s~----~-----------------~~~~~~~~~i~~~ 217 (929)
-..|++||+.|+|||||.+-++-+.....+.-.... +-...+ . ....+..+.|+..
T Consensus 416 ~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgr 495 (614)
T KOG0927|consen 416 DSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGR 495 (614)
T ss_pred ccceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHH
Confidence 467999999999999999999988744332211111 100011 0 1123344556666
Q ss_pred hcCCCCCCc------cHHHHHHHHHHHHHhcCcEEEEEecCCCcCCc
Q 042574 218 LKQSLPENE------DKVRRAGRLSEMLKAKAKFVLILDDMWEAFPL 258 (929)
Q Consensus 218 l~~~~~~~~------~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~ 258 (929)
++.....+. ...++...+..++.=..+-+||||.-.+.-+.
T Consensus 496 fgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi 542 (614)
T KOG0927|consen 496 FGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDI 542 (614)
T ss_pred hCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCc
Confidence 665432211 12223333444444467999999997664443
No 489
>PRK15453 phosphoribulokinase; Provisional
Probab=93.09 E-value=0.098 Score=54.12 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.9
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 160 DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 160 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
....+|+|.|.+|+||||+|+.+.+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999999998776
No 490
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.09 E-value=0.08 Score=52.17 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...+|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35789999999999999999998764
No 491
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.08 E-value=0.4 Score=49.33 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
+|+|.|.+|+||||+|+.+.+.+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~ 24 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFA 24 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998873
No 492
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.06 E-value=0.21 Score=51.44 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=17.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+..|+|++|+||||++..+....
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 78999999999998777776665
No 493
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.06 E-value=0.34 Score=55.80 Aligned_cols=42 Identities=19% Similarity=0.041 Sum_probs=31.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCC
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 204 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 204 (929)
..+++.|.|++|+||||||.++...-.. ..-..++||+..+.
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~--~~ge~~lyvs~eE~ 61 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGII--HFDEPGVFVTFEES 61 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH--hCCCCEEEEEEecC
Confidence 3579999999999999999998665311 22356888887643
No 494
>PLN02796 D-glycerate 3-kinase
Probab=93.03 E-value=0.58 Score=50.17 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..-+|+|.|..|+||||||+.+....
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 35689999999999999999999876
No 495
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=93.02 E-value=0.5 Score=52.95 Aligned_cols=89 Identities=18% Similarity=0.249 Sum_probs=52.0
Q ss_pred CeeEEEEEcCCCChHHHHHH-HHHHHHhhhcCCCcEE-EEEEECCCC-CHHHHHHHHHHHhcCCC------CCCccHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMK-EINNRLQKETNKFNVV-IWVTVSQPL-DLIKLQTEIATALKQSL------PENEDKVRR 231 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~-~v~~~~~~~~~~f~~~-~wv~~s~~~-~~~~~~~~i~~~l~~~~------~~~~~~~~~ 231 (929)
....++|.|..|+||||||. .+.+.. .-+.+ +++-+++.. .+.++.+.+...-.... ........+
T Consensus 140 rGQR~~I~g~~g~GKt~Lal~~I~~q~-----~~dv~cV~~~IGer~rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r 214 (485)
T CHL00059 140 RGQRELIIGDRQTGKTAVATDTILNQK-----GQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIVVAETADSPATLQ 214 (485)
T ss_pred cCCEEEeecCCCCCHHHHHHHHHHhcc-----cCCeEEEEEEecCCchHHHHHHHHhhcccchhceEEEEeCCCCCHHHH
Confidence 34689999999999999965 455432 23444 888888765 45556555544311110 111111111
Q ss_pred ------HHHHHHHHH-hcCcEEEEEecCCC
Q 042574 232 ------AGRLSEMLK-AKAKFVLILDDMWE 254 (929)
Q Consensus 232 ------~~~l~~~l~-~~~~~LlvlDdv~~ 254 (929)
+..+.++++ +++++|+|+||+..
T Consensus 215 ~~ap~~a~aiAEyfr~~G~~VLlv~DdlTr 244 (485)
T CHL00059 215 YLAPYTGAALAEYFMYRGRHTLIIYDDLSK 244 (485)
T ss_pred HHHHHHHhhHHHHHHHcCCCEEEEEcChhH
Confidence 123334443 57899999999854
No 496
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=0.27 Score=50.21 Aligned_cols=71 Identities=18% Similarity=0.314 Sum_probs=45.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKA 241 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (929)
.+-|.++|++|.||+-||++|+.... . -|.+||.. ++... .++ ..+.....+.+--+.
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATEAn---S-----TFFSvSSS----DLvSK---WmG-------ESEkLVknLFemARe 223 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATEAN---S-----TFFSVSSS----DLVSK---WMG-------ESEKLVKNLFEMARE 223 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhhcC---C-----ceEEeehH----HHHHH---Hhc-------cHHHHHHHHHHHHHh
Confidence 57899999999999999999998752 2 22334332 11111 111 123344445554456
Q ss_pred cCcEEEEEecCCC
Q 042574 242 KAKFVLILDDMWE 254 (929)
Q Consensus 242 ~~~~LlvlDdv~~ 254 (929)
.++-+|++|.|+.
T Consensus 224 ~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 224 NKPSIIFIDEIDS 236 (439)
T ss_pred cCCcEEEeehhhh
Confidence 7899999999963
No 497
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.01 E-value=0.2 Score=53.21 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
-+-|..+|++|.|||-||++|+...
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhh
Confidence 4678999999999999999999986
No 498
>PRK13946 shikimate kinase; Provisional
Probab=93.00 E-value=0.08 Score=52.27 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+.|.++|++|+||||+++.+.+.+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999999986
No 499
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.00 E-value=0.24 Score=55.04 Aligned_cols=89 Identities=15% Similarity=0.304 Sum_probs=51.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCC-CHHHHHHHHHHHhcCC------CCCCccHHHH--
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQTEIATALKQS------LPENEDKVRR-- 231 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~------~~~~~~~~~~-- 231 (929)
....++|+|..|+|||||++.+.+.. ..+..+++.+++.. .+.++..+....-... .........+
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~-----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~ 228 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP-----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR 228 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC-----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence 45689999999999999999887753 34445666666543 3445555443210000 0011111111
Q ss_pred ----HHHHHHHHH-hcCcEEEEEecCCC
Q 042574 232 ----AGRLSEMLK-AKAKFVLILDDMWE 254 (929)
Q Consensus 232 ----~~~l~~~l~-~~~~~LlvlDdv~~ 254 (929)
+..+.+++. +++++||++||+..
T Consensus 229 a~~~a~tiAEyfrd~G~~VLl~~Dsltr 256 (433)
T PRK07594 229 ALFVATTIAEFFRDNGKRVVLLADSLTR 256 (433)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCHHH
Confidence 223344443 57899999999954
No 500
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.97 E-value=0.14 Score=48.42 Aligned_cols=34 Identities=24% Similarity=0.413 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHH
Q 042574 149 VVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNR 185 (929)
Q Consensus 149 ~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 185 (929)
.++++.+.+.+ +++.++|..|+|||||+..+..+
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhh
Confidence 35667777755 78999999999999999888775
Done!