Query 042574
Match_columns 929
No_of_seqs 593 out of 5454
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 12:52:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042574.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042574hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 5.9E-45 2E-49 424.7 22.1 310 142-476 131-472 (549)
2 1vt4_I APAF-1 related killer D 100.0 2.1E-37 7.2E-42 362.0 18.0 285 140-469 129-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-36 4E-41 394.4 26.5 311 136-475 121-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.5E-33 5.3E-38 334.0 25.8 308 137-473 122-450 (591)
5 3vq2_A TLR4, TOLL-like recepto 99.9 3E-22 1E-26 238.5 27.2 159 478-639 15-177 (606)
6 2z63_A TOLL-like receptor 4, v 99.9 6.4E-23 2.2E-27 242.5 21.1 159 479-641 12-175 (570)
7 4ecn_A Leucine-rich repeat pro 99.9 6E-23 2.1E-27 248.1 19.3 353 512-894 440-838 (876)
8 4ecn_A Leucine-rich repeat pro 99.9 3.2E-22 1.1E-26 241.8 20.9 354 485-879 436-843 (876)
9 4eco_A Uncharacterized protein 99.9 2E-22 7E-27 239.7 16.3 348 517-894 202-598 (636)
10 4fmz_A Internalin; leucine ric 99.9 3.4E-21 1.2E-25 212.2 23.7 167 495-674 42-208 (347)
11 3t6q_A CD180 antigen; protein- 99.9 3.9E-21 1.3E-25 228.8 24.7 169 479-650 17-190 (606)
12 1o6v_A Internalin A; bacterial 99.9 4.1E-21 1.4E-25 220.3 23.1 336 485-880 57-392 (466)
13 2z7x_B TOLL-like receptor 1, v 99.9 5.2E-21 1.8E-25 223.1 24.2 376 481-881 7-462 (520)
14 1o6v_A Internalin A; bacterial 99.9 9.9E-21 3.4E-25 217.1 25.9 325 496-879 45-369 (466)
15 3vq2_A TLR4, TOLL-like recepto 99.9 9.3E-21 3.2E-25 225.5 26.3 146 485-631 43-197 (606)
16 2z81_A CD282 antigen, TOLL-lik 99.9 1.1E-20 3.8E-25 222.0 26.0 390 482-900 13-457 (549)
17 3o6n_A APL1; leucine-rich repe 99.9 3.2E-21 1.1E-25 216.0 19.5 289 520-880 44-335 (390)
18 3v47_A TOLL-like receptor 5B a 99.9 8.3E-21 2.8E-25 217.5 23.3 357 479-880 15-388 (455)
19 2id5_A Lingo-1, leucine rich r 99.9 1.1E-20 3.8E-25 217.7 23.2 165 482-649 19-186 (477)
20 3rgz_A Protein brassinosteroid 99.9 6.7E-21 2.3E-25 232.1 21.6 352 497-883 200-559 (768)
21 4fmz_A Internalin; leucine ric 99.9 2.6E-20 9E-25 205.1 24.0 292 483-873 53-344 (347)
22 3j0a_A TOLL-like receptor 5; m 99.9 1.8E-20 6.1E-25 230.8 24.2 364 478-881 8-399 (844)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.1E-20 1.4E-24 217.4 26.1 142 479-627 36-181 (562)
24 4eco_A Uncharacterized protein 99.9 3.2E-21 1.1E-25 229.4 16.7 327 489-879 239-603 (636)
25 3t6q_A CD180 antigen; protein- 99.8 2.3E-20 7.8E-25 222.2 23.3 369 494-894 126-558 (606)
26 3bz5_A Internalin-J, INLJ; leu 99.8 1.7E-20 5.9E-25 213.3 20.2 163 495-677 40-203 (457)
27 3o6n_A APL1; leucine-rich repe 99.8 6E-21 2.1E-25 213.7 16.0 303 496-873 44-350 (390)
28 3oja_B Anopheles plasmodium-re 99.8 2E-20 7E-25 221.2 19.7 129 520-649 50-181 (597)
29 1ziw_A TOLL-like receptor 3; i 99.8 4.2E-20 1.4E-24 223.0 21.7 386 479-878 9-445 (680)
30 3rgz_A Protein brassinosteroid 99.8 2.2E-20 7.7E-25 227.5 19.1 368 488-881 284-723 (768)
31 3oja_B Anopheles plasmodium-re 99.8 1.3E-20 4.5E-25 222.9 15.8 150 496-650 50-203 (597)
32 2z81_A CD282 antigen, TOLL-lik 99.8 4.2E-20 1.4E-24 217.1 19.2 359 491-894 44-508 (549)
33 2z63_A TOLL-like receptor 4, v 99.8 8.9E-20 3E-24 215.4 21.4 351 493-880 48-511 (570)
34 4g8a_A TOLL-like receptor 4; l 99.8 2.7E-19 9.4E-24 214.2 25.8 153 480-636 37-194 (635)
35 1ziw_A TOLL-like receptor 3; i 99.8 8.6E-19 2.9E-23 211.5 25.5 160 485-645 36-201 (680)
36 2z7x_B TOLL-like receptor 1, v 99.8 9.3E-19 3.2E-23 204.0 24.5 142 500-650 3-149 (520)
37 3bz5_A Internalin-J, INLJ; leu 99.8 4.2E-19 1.4E-23 201.8 18.8 310 518-903 39-348 (457)
38 4fcg_A Uncharacterized protein 99.8 2.6E-19 8.9E-24 194.6 16.3 150 497-650 81-240 (328)
39 2id5_A Lingo-1, leucine rich r 99.8 8.3E-19 2.8E-23 202.0 21.2 285 484-847 42-331 (477)
40 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.6E-18 5.4E-23 203.9 23.2 144 498-650 32-180 (562)
41 3v47_A TOLL-like receptor 5B a 99.8 9.7E-19 3.3E-23 200.3 19.5 332 499-878 12-362 (455)
42 4fcg_A Uncharacterized protein 99.8 9.1E-19 3.1E-23 190.3 18.2 239 544-912 79-319 (328)
43 2ft3_A Biglycan; proteoglycan, 99.8 1.9E-18 6.6E-23 188.7 18.1 144 498-649 34-182 (332)
44 1jl5_A Outer protein YOPM; leu 99.8 7.9E-18 2.7E-22 191.2 23.2 315 483-877 80-410 (454)
45 1xku_A Decorin; proteoglycan, 99.8 1.8E-17 6E-22 180.9 22.2 145 498-649 32-181 (330)
46 3g06_A SSPH2 (leucine-rich rep 99.8 1.4E-17 4.6E-22 195.0 22.1 131 498-649 41-171 (622)
47 1ogq_A PGIP-2, polygalacturona 99.8 2.4E-18 8.1E-23 185.9 13.3 250 497-853 50-308 (313)
48 3j0a_A TOLL-like receptor 5; m 99.8 6.4E-17 2.2E-21 199.1 27.3 242 615-880 266-521 (844)
49 4g8a_A TOLL-like receptor 4; l 99.7 4.9E-17 1.7E-21 194.6 23.6 367 482-880 60-559 (635)
50 2z80_A TOLL-like receptor 2, v 99.7 1.8E-17 6E-22 182.7 15.6 191 481-677 38-234 (353)
51 1jl5_A Outer protein YOPM; leu 99.7 1.9E-16 6.5E-21 179.7 24.3 309 497-885 71-382 (454)
52 1xku_A Decorin; proteoglycan, 99.7 1.4E-16 4.7E-21 173.8 21.9 122 522-649 32-155 (330)
53 2z80_A TOLL-like receptor 2, v 99.7 8.1E-17 2.8E-21 177.4 19.2 145 500-649 34-184 (353)
54 2ft3_A Biglycan; proteoglycan, 99.7 1.1E-16 3.8E-21 174.6 18.0 280 481-847 40-331 (332)
55 3zyj_A Leucine-rich repeat-con 99.7 1.4E-16 4.7E-21 181.1 19.1 164 480-649 49-217 (440)
56 1ogq_A PGIP-2, polygalacturona 99.7 2.2E-17 7.6E-22 178.2 11.6 252 521-880 50-309 (313)
57 3zyi_A Leucine-rich repeat-con 99.7 1.3E-16 4.6E-21 181.9 18.6 164 480-649 60-228 (452)
58 3o53_A Protein LRIM1, AGAP0063 99.7 3.4E-18 1.1E-22 185.2 4.8 144 499-650 12-155 (317)
59 3zyj_A Leucine-rich repeat-con 99.7 2.5E-16 8.6E-21 179.0 20.4 243 498-848 44-291 (440)
60 1ozn_A Reticulon 4 receptor; N 99.7 3.8E-17 1.3E-21 174.2 11.5 166 481-649 18-187 (285)
61 3zyi_A Leucine-rich repeat-con 99.7 4.1E-16 1.4E-20 177.9 20.8 242 498-847 55-301 (452)
62 1ozn_A Reticulon 4 receptor; N 99.7 1.1E-16 3.9E-21 170.5 14.5 146 500-649 14-163 (285)
63 2z66_A Variable lymphocyte rec 99.7 1.2E-16 4.2E-21 172.2 13.3 164 482-649 15-185 (306)
64 2z66_A Variable lymphocyte rec 99.7 2.9E-16 1E-20 169.2 15.6 243 500-807 10-259 (306)
65 3g06_A SSPH2 (leucine-rich rep 99.7 1.7E-15 5.9E-20 177.2 22.4 148 479-650 45-192 (622)
66 2o6q_A Variable lymphocyte rec 99.7 1.2E-15 4E-20 161.1 17.2 192 479-675 21-215 (270)
67 2z62_A TOLL-like receptor 4, v 99.6 2.1E-15 7.2E-20 159.8 16.1 135 497-632 28-166 (276)
68 3ogk_B Coronatine-insensitive 99.6 2.3E-16 8E-21 187.0 9.0 334 495-877 162-527 (592)
69 3m19_A Variable lymphocyte rec 99.6 4.7E-15 1.6E-19 154.5 16.9 167 480-650 20-190 (251)
70 2xwt_C Thyrotropin receptor; s 99.6 1.2E-15 4.1E-20 157.8 11.7 159 486-649 23-189 (239)
71 2qen_A Walker-type ATPase; unk 99.6 1.2E-14 4.2E-19 159.8 18.4 292 137-469 10-349 (350)
72 1p9a_G Platelet glycoprotein I 99.6 5.3E-15 1.8E-19 157.4 14.5 164 482-650 18-183 (290)
73 2o6q_A Variable lymphocyte rec 99.6 1.3E-14 4.5E-19 153.0 16.9 165 484-650 47-216 (270)
74 3oja_A Leucine-rich immune mol 99.6 1.3E-15 4.5E-20 174.7 9.9 121 521-649 34-154 (487)
75 3oja_A Leucine-rich immune mol 99.6 6E-16 2E-20 177.5 6.8 145 496-649 33-179 (487)
76 2fna_A Conserved hypothetical 99.6 3.8E-14 1.3E-18 156.3 21.0 290 137-468 11-356 (357)
77 1z7x_W Ribonuclease inhibitor; 99.6 1.5E-16 5.2E-21 182.3 0.9 333 497-876 28-411 (461)
78 3o53_A Protein LRIM1, AGAP0063 99.6 8.1E-16 2.8E-20 166.4 6.5 266 496-877 33-301 (317)
79 4ay9_X Follicle-stimulating ho 99.6 1.7E-14 5.8E-19 158.3 14.1 119 525-647 13-136 (350)
80 1w5s_A Origin recognition comp 99.6 4.8E-14 1.6E-18 158.8 17.7 291 139-452 22-371 (412)
81 1wwl_A Monocyte differentiatio 99.5 1.1E-15 3.9E-20 164.9 3.9 126 520-650 42-184 (312)
82 3ogk_B Coronatine-insensitive 99.5 1.3E-15 4.6E-20 180.5 4.8 368 497-893 112-523 (592)
83 3m19_A Variable lymphocyte rec 99.5 3.7E-14 1.3E-18 147.7 15.2 175 497-677 14-191 (251)
84 1h6u_A Internalin H; cell adhe 99.5 4.9E-14 1.7E-18 151.5 16.6 142 498-649 42-183 (308)
85 3rfs_A Internalin B, repeat mo 99.5 5.9E-14 2E-18 148.1 16.1 150 496-649 62-215 (272)
86 2p1m_B Transport inhibitor res 99.5 1.8E-15 6E-20 179.5 4.8 352 497-874 105-518 (594)
87 1p9a_G Platelet glycoprotein I 99.5 5.7E-14 1.9E-18 149.4 15.9 178 496-681 9-188 (290)
88 4ay9_X Follicle-stimulating ho 99.5 2.3E-14 8E-19 157.2 13.3 166 480-649 15-187 (350)
89 1h6u_A Internalin H; cell adhe 99.5 9.7E-14 3.3E-18 149.2 17.8 183 482-679 49-231 (308)
90 2xwt_C Thyrotropin receptor; s 99.5 2.3E-14 7.7E-19 148.2 11.4 167 482-650 39-216 (239)
91 3e6j_A Variable lymphocyte rec 99.5 7.5E-14 2.6E-18 143.0 15.0 147 499-650 21-170 (229)
92 1h6t_A Internalin B; cell adhe 99.5 7E-14 2.4E-18 148.9 15.1 170 495-678 44-213 (291)
93 2v9t_B SLIT homolog 2 protein 99.5 9E-14 3.1E-18 141.4 14.4 146 500-650 14-163 (220)
94 1z7x_W Ribonuclease inhibitor; 99.5 1.2E-15 3.9E-20 175.0 -0.2 352 496-892 2-407 (461)
95 3rfs_A Internalin B, repeat mo 99.5 1.2E-13 4.3E-18 145.6 15.3 174 495-675 39-215 (272)
96 2v70_A SLIT-2, SLIT homolog 2 99.5 1.4E-13 4.9E-18 139.9 15.0 149 499-651 13-165 (220)
97 4ezg_A Putative uncharacterize 99.5 1.2E-13 3.9E-18 138.1 14.0 149 494-650 41-192 (197)
98 2p1m_B Transport inhibitor res 99.5 5.8E-15 2E-19 175.1 5.1 380 496-894 65-517 (594)
99 2xot_A Amphoterin-induced prot 99.5 5.5E-14 1.9E-18 154.9 10.7 167 481-650 25-200 (361)
100 1wwl_A Monocyte differentiatio 99.5 4.8E-15 1.7E-19 159.9 1.0 241 497-806 43-306 (312)
101 2ast_B S-phase kinase-associat 99.5 2.6E-14 9E-19 156.1 6.0 150 497-649 70-232 (336)
102 1h6t_A Internalin B; cell adhe 99.5 5.7E-13 1.9E-17 141.8 15.9 156 484-650 56-211 (291)
103 1xeu_A Internalin C; cellular 99.5 5.5E-13 1.9E-17 139.6 15.2 146 494-650 38-183 (263)
104 2z62_A TOLL-like receptor 4, v 99.5 2.5E-13 8.5E-18 143.8 12.7 189 485-677 39-236 (276)
105 3e6j_A Variable lymphocyte rec 99.5 5.1E-13 1.7E-17 136.8 14.5 146 480-629 25-173 (229)
106 2o6s_A Variable lymphocyte rec 99.4 7.8E-13 2.7E-17 133.3 15.1 146 500-650 10-159 (208)
107 1m9s_A Internalin B; cell inva 99.4 2.6E-13 9E-18 158.6 13.2 168 496-677 42-209 (605)
108 2o6s_A Variable lymphocyte rec 99.4 3E-13 1E-17 136.5 11.8 158 481-649 14-175 (208)
109 2v9t_B SLIT homolog 2 protein 99.4 4.8E-13 1.6E-17 136.0 13.2 147 479-628 16-165 (220)
110 2v70_A SLIT-2, SLIT homolog 2 99.4 9.5E-13 3.3E-17 133.7 12.8 146 480-628 17-166 (220)
111 3cvr_A Invasion plasmid antige 99.4 4.4E-12 1.5E-16 146.4 18.0 132 497-649 59-190 (571)
112 4glp_A Monocyte differentiatio 99.4 1.2E-12 4.3E-17 140.8 12.3 153 497-649 91-261 (310)
113 2xot_A Amphoterin-induced prot 99.4 1.7E-12 5.8E-17 143.0 13.2 170 499-675 20-199 (361)
114 1m9s_A Internalin B; cell inva 99.4 2.4E-12 8.2E-17 150.4 14.7 155 485-650 54-208 (605)
115 1xeu_A Internalin C; cellular 99.4 5.8E-13 2E-17 139.4 8.1 168 496-678 18-185 (263)
116 4ezg_A Putative uncharacterize 99.3 3.1E-12 1.1E-16 127.6 11.7 143 482-629 52-195 (197)
117 2ca6_A RAN GTPase-activating p 99.3 4.9E-13 1.7E-17 149.0 5.8 156 495-650 30-227 (386)
118 2ell_A Acidic leucine-rich nuc 99.3 1.9E-12 6.6E-17 125.5 8.5 131 497-632 24-164 (168)
119 4glp_A Monocyte differentiatio 99.3 1.6E-12 5.4E-17 140.0 8.4 175 494-677 114-306 (310)
120 2ell_A Acidic leucine-rich nuc 99.3 3.3E-12 1.1E-16 123.9 9.5 130 519-650 22-158 (168)
121 2ca6_A RAN GTPase-activating p 99.3 5.5E-13 1.9E-17 148.6 4.3 39 589-627 91-134 (386)
122 2ast_B S-phase kinase-associat 99.3 5.4E-13 1.8E-17 145.7 4.0 177 494-673 90-280 (336)
123 2wfh_A SLIT homolog 2 protein 99.3 1.2E-11 4.2E-16 122.5 12.8 122 525-650 14-137 (193)
124 3goz_A Leucine-rich repeat-con 99.3 1.5E-12 5.3E-17 143.4 6.7 107 521-628 22-151 (362)
125 2je0_A Acidic leucine-rich nuc 99.3 1.7E-12 6E-17 123.0 6.1 103 543-646 39-147 (149)
126 3cvr_A Invasion plasmid antige 99.3 2E-11 6.8E-16 141.0 15.3 170 482-678 67-243 (571)
127 2qby_A CDC6 homolog 1, cell di 99.3 1.3E-10 4.3E-15 129.4 21.3 291 139-452 20-348 (386)
128 2v1u_A Cell division control p 99.3 1.7E-10 5.7E-15 128.5 21.7 291 139-452 19-351 (387)
129 1w8a_A SLIT protein; signaling 99.2 1.8E-11 6E-16 121.4 10.8 104 547-650 30-137 (192)
130 1fnn_A CDC6P, cell division co 99.2 2E-10 6.9E-15 128.0 20.6 290 139-453 17-352 (389)
131 3goz_A Leucine-rich repeat-con 99.2 8.5E-12 2.9E-16 137.5 9.0 262 526-847 3-295 (362)
132 1w8a_A SLIT protein; signaling 99.2 3.4E-11 1.2E-15 119.4 11.8 126 499-628 10-139 (192)
133 1a9n_A U2A', U2A'; complex (nu 99.2 1.1E-11 3.7E-16 121.1 7.8 128 519-650 17-151 (176)
134 2qby_B CDC6 homolog 3, cell di 99.2 3.3E-10 1.1E-14 126.0 20.2 287 139-452 20-339 (384)
135 2wfh_A SLIT homolog 2 protein 99.2 6.3E-11 2.2E-15 117.4 12.8 124 500-628 13-139 (193)
136 2je0_A Acidic leucine-rich nuc 99.2 2.1E-11 7.2E-16 115.5 8.4 123 496-623 16-148 (149)
137 4b8c_D Glucose-repressible alc 99.2 2.2E-11 7.5E-16 146.1 10.3 149 497-650 173-327 (727)
138 2o6r_A Variable lymphocyte rec 99.2 1.3E-10 4.5E-15 113.5 12.8 103 547-650 29-135 (177)
139 1dce_A Protein (RAB geranylger 99.2 6.6E-11 2.2E-15 137.4 10.7 120 522-645 442-566 (567)
140 2o6r_A Variable lymphocyte rec 99.1 2E-10 6.7E-15 112.3 12.5 127 498-629 8-138 (177)
141 1a9n_A U2A', U2A'; complex (nu 99.1 5E-11 1.7E-15 116.4 8.0 128 496-628 18-153 (176)
142 4b8c_D Glucose-repressible alc 99.1 2.8E-11 9.5E-16 145.2 6.9 110 517-629 220-330 (727)
143 3qfl_A MLA10; coiled-coil, (CC 99.1 1.7E-10 5.9E-15 101.9 9.0 74 10-90 6-79 (115)
144 2chg_A Replication factor C sm 99.1 1.6E-09 5.5E-14 110.2 14.8 183 139-343 17-204 (226)
145 1ds9_A Outer arm dynein; leuci 99.0 1.7E-12 5.8E-17 129.7 -7.5 104 543-649 45-150 (198)
146 1njg_A DNA polymerase III subu 99.0 7.4E-10 2.5E-14 114.5 12.1 193 139-345 23-230 (250)
147 1dce_A Protein (RAB geranylger 99.0 4.5E-10 1.5E-14 130.4 11.4 120 498-622 442-567 (567)
148 3g39_A Variable lymphocyte rec 99.0 1.4E-09 4.6E-14 105.3 10.7 101 548-650 11-113 (170)
149 2r9u_A Variable lymphocyte rec 99.0 1.6E-09 5.5E-14 105.1 10.8 100 549-650 15-116 (174)
150 1ds9_A Outer arm dynein; leuci 98.9 2.4E-11 8E-16 121.3 -4.4 143 498-645 24-180 (198)
151 2r9u_A Variable lymphocyte rec 98.9 4.1E-09 1.4E-13 102.3 9.9 103 524-631 15-121 (174)
152 3g39_A Variable lymphocyte rec 98.9 7E-09 2.4E-13 100.2 9.9 102 524-630 12-117 (170)
153 1sxj_B Activator 1 37 kDa subu 98.8 1.6E-08 5.6E-13 109.2 11.1 184 139-343 21-210 (323)
154 3sb4_A Hypothetical leucine ri 98.7 1.1E-08 3.7E-13 110.9 8.2 171 497-673 49-305 (329)
155 3sb4_A Hypothetical leucine ri 98.7 1.9E-08 6.7E-13 108.8 10.0 77 568-647 225-305 (329)
156 3te6_A Regulatory protein SIR3 98.7 1.3E-07 4.5E-12 99.5 15.7 170 140-312 21-213 (318)
157 1hqc_A RUVB; extended AAA-ATPa 98.7 3.1E-07 1E-11 99.1 17.1 171 139-346 12-214 (324)
158 2ifg_A High affinity nerve gro 98.6 6.1E-08 2.1E-12 105.9 10.2 96 552-649 14-113 (347)
159 1iqp_A RFCS; clamp loader, ext 98.6 5.5E-08 1.9E-12 105.2 8.5 184 139-344 25-213 (327)
160 2ifg_A High affinity nerve gro 98.5 1.6E-07 5.6E-12 102.4 9.7 75 502-579 13-90 (347)
161 2chq_A Replication factor C sm 98.5 8.2E-07 2.8E-11 95.5 13.0 179 139-342 17-203 (319)
162 1jbk_A CLPB protein; beta barr 98.4 3E-07 1E-11 90.7 7.9 47 139-187 22-68 (195)
163 3un9_A NLR family member X1; l 98.4 1.5E-08 5.2E-13 111.1 -3.2 153 497-650 72-250 (372)
164 4fdw_A Leucine rich hypothetic 98.4 5.4E-06 1.8E-10 91.7 16.5 143 498-649 136-281 (401)
165 1jr3_A DNA polymerase III subu 98.3 1.7E-06 5.9E-11 95.3 11.9 191 139-343 16-221 (373)
166 3un9_A NLR family member X1; l 98.3 1.8E-07 6.1E-12 102.5 1.6 156 520-679 71-253 (372)
167 2z4s_A Chromosomal replication 98.2 4.2E-06 1.4E-10 93.6 12.4 182 139-340 105-303 (440)
168 1sxj_D Activator 1 41 kDa subu 98.2 2.1E-06 7.2E-11 93.8 9.3 192 139-342 37-234 (353)
169 4fdw_A Leucine rich hypothetic 98.2 6.7E-06 2.3E-10 90.9 13.3 145 495-647 178-331 (401)
170 1d2n_A N-ethylmaleimide-sensit 98.2 2.5E-05 8.7E-10 81.5 16.7 177 159-365 61-264 (272)
171 3bos_A Putative DNA replicatio 98.2 4.2E-07 1.4E-11 93.3 2.9 172 139-342 28-216 (242)
172 3h4m_A Proteasome-activating n 98.2 1.5E-05 5E-10 84.1 14.5 175 139-341 17-229 (285)
173 3pvs_A Replication-associated 98.1 1.4E-05 4.8E-10 89.1 13.5 174 139-342 26-214 (447)
174 4fs7_A Uncharacterized protein 98.1 6.2E-05 2.1E-09 83.3 18.8 66 509-577 59-125 (394)
175 1sxj_A Activator 1 95 kDa subu 98.1 1.3E-05 4.3E-10 92.0 12.5 188 139-343 39-253 (516)
176 3uk6_A RUVB-like 2; hexameric 98.1 1.1E-05 3.7E-10 88.6 11.2 48 139-186 44-94 (368)
177 2qz4_A Paraplegin; AAA+, SPG7, 98.1 0.00011 3.8E-09 76.1 18.0 180 139-342 6-221 (262)
178 3e4g_A ATP synthase subunit S, 98.0 3.6E-06 1.2E-10 80.0 5.2 92 771-877 62-154 (176)
179 1sxj_E Activator 1 40 kDa subu 98.0 1.5E-05 5.3E-10 86.9 10.7 193 139-343 14-237 (354)
180 3d8b_A Fidgetin-like protein 1 98.0 7.8E-05 2.7E-09 81.0 15.6 178 139-343 84-295 (357)
181 3syl_A Protein CBBX; photosynt 98.0 1.2E-05 4E-10 85.9 8.6 133 161-312 66-219 (309)
182 2p65_A Hypothetical protein PF 98.0 2E-05 6.7E-10 76.9 9.3 47 139-187 22-68 (187)
183 3e4g_A ATP synthase subunit S, 97.9 7.1E-06 2.4E-10 77.9 5.4 91 736-852 61-155 (176)
184 3eie_A Vacuolar protein sortin 97.9 8.8E-05 3E-09 79.4 14.6 177 139-342 18-227 (322)
185 3pfi_A Holliday junction ATP-d 97.9 3.5E-05 1.2E-09 83.3 11.7 168 139-342 29-226 (338)
186 3b9p_A CG5977-PA, isoform A; A 97.9 0.00031 1.1E-08 74.3 18.8 176 139-342 21-232 (297)
187 3u61_B DNA polymerase accessor 97.9 5.5E-05 1.9E-09 81.3 12.8 173 139-339 26-212 (324)
188 1xwi_A SKD1 protein; VPS4B, AA 97.9 0.00026 8.9E-09 75.6 18.0 179 139-343 12-223 (322)
189 1l8q_A Chromosomal replication 97.9 3.1E-05 1.1E-09 83.2 10.3 175 139-338 11-203 (324)
190 1a5t_A Delta prime, HOLB; zinc 97.9 6.3E-05 2.2E-09 81.0 12.5 169 147-342 8-204 (334)
191 1sxj_C Activator 1 40 kDa subu 97.8 5.8E-05 2E-09 81.6 10.8 179 139-340 25-209 (340)
192 3vfd_A Spastin; ATPase, microt 97.8 0.00026 9E-09 78.0 16.1 177 138-342 114-325 (389)
193 3pxg_A Negative regulator of g 97.8 0.00015 5E-09 81.8 13.4 148 139-311 180-339 (468)
194 2qp9_X Vacuolar protein sortin 97.7 0.00014 4.9E-09 78.8 11.9 177 139-342 51-260 (355)
195 1qvr_A CLPB protein; coiled co 97.7 8.8E-05 3E-09 90.5 11.1 155 139-310 170-345 (854)
196 2ra8_A Uncharacterized protein 97.7 4.1E-05 1.4E-09 83.0 7.0 126 519-649 170-317 (362)
197 2zan_A Vacuolar protein sortin 97.7 0.00033 1.1E-08 78.3 14.0 178 139-342 134-344 (444)
198 3cf0_A Transitional endoplasmi 97.7 0.00045 1.5E-08 73.1 14.2 172 139-338 15-223 (301)
199 4b4t_J 26S protease regulatory 97.6 0.0012 4.1E-08 71.2 16.9 149 162-336 182-354 (405)
200 2ra8_A Uncharacterized protein 97.6 3.4E-05 1.2E-09 83.6 4.8 134 540-677 166-319 (362)
201 4b4t_L 26S protease subunit RP 97.6 0.0015 5.2E-08 71.7 17.8 149 162-336 215-387 (437)
202 3n70_A Transport activator; si 97.5 2.7E-05 9.2E-10 72.5 2.5 45 140-186 2-48 (145)
203 4b4t_I 26S protease regulatory 97.5 0.0027 9.4E-08 68.6 18.0 149 162-336 216-388 (437)
204 3pxi_A Negative regulator of g 97.5 0.00063 2.1E-08 82.0 14.6 148 139-311 180-339 (758)
205 4b4t_M 26S protease regulatory 97.5 0.0011 3.8E-08 72.6 15.2 170 139-336 181-387 (434)
206 4gt6_A Cell surface protein; l 97.5 0.0033 1.1E-07 69.3 18.5 132 509-647 51-190 (394)
207 4b4t_H 26S protease regulatory 97.4 0.0031 1.1E-07 69.0 16.8 150 161-336 242-415 (467)
208 4b4t_K 26S protease regulatory 97.4 0.0029 1E-07 69.2 16.8 149 162-336 206-379 (428)
209 1r6b_X CLPA protein; AAA+, N-t 97.4 0.0012 3.9E-08 79.8 14.6 155 139-310 186-362 (758)
210 1io0_A Tropomodulin; LRR prote 97.4 0.00012 4E-09 71.3 4.7 62 589-650 90-162 (185)
211 1in4_A RUVB, holliday junction 97.4 0.00095 3.3E-08 71.7 12.3 48 292-342 175-222 (334)
212 1io0_A Tropomodulin; LRR prote 97.3 5.9E-05 2E-09 73.5 2.0 109 518-628 33-164 (185)
213 1lv7_A FTSH; alpha/beta domain 97.3 0.0077 2.6E-07 61.8 17.7 176 139-340 12-222 (257)
214 3hu3_A Transitional endoplasmi 97.3 0.003 1E-07 71.0 15.5 174 139-340 204-412 (489)
215 2ce7_A Cell division protein F 97.3 0.0021 7.3E-08 71.7 14.1 172 139-336 16-221 (476)
216 3ec2_A DNA replication protein 97.3 0.00042 1.4E-08 67.0 7.4 115 147-280 20-142 (180)
217 2gno_A DNA polymerase III, gam 97.3 0.00053 1.8E-08 72.2 8.5 145 147-310 3-152 (305)
218 3rw6_A Nuclear RNA export fact 97.2 0.00022 7.6E-09 73.0 5.0 78 543-621 167-257 (267)
219 4fcw_A Chaperone protein CLPB; 97.2 0.00031 1.1E-08 74.8 6.3 45 140-186 18-71 (311)
220 4gt6_A Cell surface protein; l 97.2 0.014 4.8E-07 64.1 19.9 144 498-647 65-213 (394)
221 2w58_A DNAI, primosome compone 97.2 0.00069 2.4E-08 66.9 8.2 122 139-280 25-158 (202)
222 1ofh_A ATP-dependent HSL prote 97.2 0.00092 3.1E-08 71.0 9.3 46 139-186 15-74 (310)
223 2r62_A Cell division protease 97.2 0.00034 1.2E-08 72.7 5.7 48 139-186 11-68 (268)
224 3rw6_A Nuclear RNA export fact 97.1 0.00053 1.8E-08 70.3 6.3 55 543-598 193-257 (267)
225 1ojl_A Transcriptional regulat 96.8 0.00043 1.5E-08 73.2 2.7 45 140-186 3-49 (304)
226 2bjv_A PSP operon transcriptio 96.8 0.0005 1.7E-08 71.3 3.0 46 139-186 6-53 (265)
227 3pxi_A Negative regulator of g 96.7 0.00063 2.1E-08 82.0 3.7 60 139-203 491-559 (758)
228 2cvh_A DNA repair and recombin 96.7 0.0055 1.9E-07 61.1 9.6 44 162-211 20-63 (220)
229 4fs7_A Uncharacterized protein 96.6 0.0057 2E-07 67.3 10.3 142 498-648 231-375 (394)
230 3cf2_A TER ATPase, transitiona 96.5 0.0098 3.3E-07 70.4 11.9 149 162-336 238-407 (806)
231 2vhj_A Ntpase P4, P4; non- hyd 96.5 0.0019 6.4E-08 67.2 4.9 69 162-254 123-193 (331)
232 2kjq_A DNAA-related protein; s 96.4 0.004 1.4E-07 57.8 6.2 40 161-203 35-74 (149)
233 1n0w_A DNA repair protein RAD5 96.4 0.013 4.4E-07 59.5 10.5 92 162-254 24-130 (243)
234 3io5_A Recombination and repai 96.3 0.01 3.5E-07 61.4 9.2 86 164-255 30-123 (333)
235 4h09_A Hypothetical leucine ri 96.2 0.012 4.2E-07 64.3 9.9 130 512-647 208-341 (379)
236 3t15_A Ribulose bisphosphate c 96.2 0.004 1.4E-07 65.3 5.6 25 162-186 36-60 (293)
237 3hr8_A Protein RECA; alpha and 96.2 0.013 4.4E-07 62.6 9.5 85 162-254 61-150 (356)
238 3m6a_A ATP-dependent protease 96.2 0.024 8.1E-07 64.9 12.3 26 161-186 107-132 (543)
239 3ice_A Transcription terminati 96.2 0.0066 2.3E-07 64.4 6.8 91 160-254 172-272 (422)
240 1v5w_A DMC1, meiotic recombina 96.2 0.025 8.5E-07 60.6 11.6 57 162-219 122-181 (343)
241 2z43_A DNA repair and recombin 96.1 0.018 6.2E-07 61.2 10.3 91 162-253 107-213 (324)
242 3dm5_A SRP54, signal recogniti 96.1 0.11 3.7E-06 57.0 16.2 27 161-187 99-125 (443)
243 2c9o_A RUVB-like 1; hexameric 96.1 0.011 3.8E-07 66.3 8.6 48 139-186 37-87 (456)
244 1r6b_X CLPA protein; AAA+, N-t 96.1 0.0054 1.9E-07 73.9 6.5 46 139-186 458-512 (758)
245 2i1q_A DNA repair and recombin 96.1 0.017 6E-07 61.4 9.7 58 162-220 98-168 (322)
246 1ypw_A Transitional endoplasmi 96.0 0.019 6.4E-07 69.0 10.9 128 162-312 238-387 (806)
247 2dhr_A FTSH; AAA+ protein, hex 96.0 0.019 6.3E-07 64.5 9.9 48 139-186 31-88 (499)
248 4h09_A Hypothetical leucine ri 96.0 0.022 7.7E-07 62.1 10.3 137 496-639 216-356 (379)
249 2xxa_A Signal recognition part 95.9 0.21 7.1E-06 55.0 17.9 90 161-252 99-192 (433)
250 3c8u_A Fructokinase; YP_612366 95.9 0.0088 3E-07 59.1 6.0 40 148-187 6-47 (208)
251 2qgz_A Helicase loader, putati 95.8 0.014 4.7E-07 61.5 7.2 51 149-201 136-189 (308)
252 2zr9_A Protein RECA, recombina 95.8 0.021 7.2E-07 61.2 8.7 84 162-254 61-150 (349)
253 2x8a_A Nuclear valosin-contain 95.7 0.028 9.7E-07 58.0 9.3 125 164-310 46-191 (274)
254 1qvr_A CLPB protein; coiled co 95.7 0.0056 1.9E-07 74.5 4.5 46 139-186 558-612 (854)
255 2w0m_A SSO2452; RECA, SSPF, un 95.7 0.029 9.8E-07 56.4 8.9 38 162-202 23-60 (235)
256 1xp8_A RECA protein, recombina 95.6 0.027 9.3E-07 60.5 8.8 85 162-254 74-163 (366)
257 1u94_A RECA protein, recombina 95.6 0.028 9.4E-07 60.3 8.7 84 162-254 63-152 (356)
258 1sky_E F1-ATPase, F1-ATP synth 95.5 0.034 1.2E-06 61.1 9.3 89 163-253 152-255 (473)
259 2px0_A Flagellar biosynthesis 95.4 0.042 1.4E-06 57.3 9.4 86 161-251 104-190 (296)
260 3lda_A DNA repair protein RAD5 95.4 0.05 1.7E-06 59.2 10.4 92 162-254 178-284 (400)
261 4a74_A DNA repair and recombin 95.3 0.06 2.1E-06 53.8 10.0 46 162-207 25-73 (231)
262 1odf_A YGR205W, hypothetical 3 95.2 0.092 3.1E-06 54.5 11.0 28 160-187 29-56 (290)
263 3kb2_A SPBC2 prophage-derived 95.2 0.011 3.9E-07 56.1 3.8 24 163-186 2-25 (173)
264 2ck3_D ATP synthase subunit be 95.1 0.096 3.3E-06 57.4 11.2 91 161-253 152-263 (482)
265 1rz3_A Hypothetical protein rb 95.0 0.023 8E-07 55.7 5.6 39 148-186 5-46 (201)
266 1qhx_A CPT, protein (chloramph 95.0 0.013 4.5E-07 56.1 3.6 24 163-186 4-27 (178)
267 1g5t_A COB(I)alamin adenosyltr 95.0 0.022 7.4E-07 54.7 5.0 116 163-281 29-163 (196)
268 3vaa_A Shikimate kinase, SK; s 94.9 0.015 5.1E-07 57.0 3.7 25 162-186 25-49 (199)
269 3lw7_A Adenylate kinase relate 94.8 0.014 4.6E-07 55.8 3.3 20 163-182 2-21 (179)
270 3co5_A Putative two-component 94.8 0.0057 1.9E-07 56.3 0.5 44 140-186 5-51 (143)
271 1vma_A Cell division protein F 94.8 0.099 3.4E-06 54.6 10.0 87 161-252 103-195 (306)
272 4a1f_A DNAB helicase, replicat 94.8 0.48 1.6E-05 50.0 15.2 51 162-217 46-96 (338)
273 3e70_C DPA, signal recognition 94.8 0.29 9.7E-06 51.7 13.6 58 160-220 127-185 (328)
274 3trf_A Shikimate kinase, SK; a 94.8 0.017 5.8E-07 55.8 3.8 25 162-186 5-29 (185)
275 3kl4_A SRP54, signal recogniti 94.7 0.12 4.3E-06 56.5 10.9 38 162-202 97-134 (433)
276 1kgd_A CASK, peripheral plasma 94.7 0.016 5.5E-07 55.7 3.5 24 163-186 6-29 (180)
277 3bh0_A DNAB-like replicative h 94.7 0.14 4.9E-06 53.9 11.1 51 162-217 68-118 (315)
278 3uie_A Adenylyl-sulfate kinase 94.7 0.02 6.9E-07 56.1 4.1 28 160-187 23-50 (200)
279 1ly1_A Polynucleotide kinase; 94.7 0.018 6.2E-07 55.2 3.6 22 163-184 3-24 (181)
280 2dr3_A UPF0273 protein PH0284; 94.7 0.1 3.6E-06 52.7 9.6 39 162-203 23-61 (247)
281 2r6a_A DNAB helicase, replicat 94.6 0.36 1.2E-05 53.8 14.7 50 162-215 203-252 (454)
282 1kag_A SKI, shikimate kinase I 94.6 0.016 5.4E-07 55.2 3.0 24 163-186 5-28 (173)
283 1zp6_A Hypothetical protein AT 94.6 0.017 5.9E-07 56.0 3.3 24 162-185 9-32 (191)
284 3rfe_A Platelet glycoprotein I 94.5 0.048 1.6E-06 49.0 5.9 54 501-558 12-67 (130)
285 3rfe_A Platelet glycoprotein I 94.5 0.048 1.6E-06 49.0 5.8 54 595-650 11-66 (130)
286 3t61_A Gluconokinase; PSI-biol 94.5 0.017 5.9E-07 56.7 3.1 25 162-186 18-42 (202)
287 3l0o_A Transcription terminati 94.5 0.027 9.1E-07 59.7 4.7 53 152-205 164-217 (427)
288 4eun_A Thermoresistant glucoki 94.5 0.022 7.5E-07 55.8 3.9 27 160-186 27-53 (200)
289 1jr3_D DNA polymerase III, del 94.5 0.14 4.9E-06 54.7 10.7 157 160-342 16-184 (343)
290 1nks_A Adenylate kinase; therm 94.5 0.022 7.4E-07 55.3 3.8 25 163-187 2-26 (194)
291 2q6t_A DNAB replication FORK h 94.5 0.39 1.3E-05 53.3 14.4 51 162-216 200-250 (444)
292 1pzn_A RAD51, DNA repair and r 94.5 0.13 4.4E-06 55.1 10.0 47 162-208 131-180 (349)
293 1kht_A Adenylate kinase; phosp 94.4 0.023 7.8E-07 55.1 3.7 24 163-186 4-27 (192)
294 2ze6_A Isopentenyl transferase 94.4 0.024 8.3E-07 57.8 3.9 24 163-186 2-25 (253)
295 3iij_A Coilin-interacting nucl 94.4 0.021 7E-07 54.9 3.2 25 162-186 11-35 (180)
296 1knq_A Gluconate kinase; ALFA/ 94.3 0.026 8.9E-07 53.8 3.9 25 162-186 8-32 (175)
297 2rhm_A Putative kinase; P-loop 94.3 0.027 9.1E-07 54.7 4.0 25 162-186 5-29 (193)
298 1via_A Shikimate kinase; struc 94.3 0.021 7.2E-07 54.5 3.2 24 163-186 5-28 (175)
299 1fx0_B ATP synthase beta chain 94.3 0.1 3.5E-06 57.4 8.8 91 161-253 164-276 (498)
300 1zuh_A Shikimate kinase; alpha 94.2 0.027 9.3E-07 53.3 3.8 25 162-186 7-31 (168)
301 1j8m_F SRP54, signal recogniti 94.2 0.13 4.5E-06 53.5 9.3 88 162-252 98-189 (297)
302 3tr0_A Guanylate kinase, GMP k 94.2 0.024 8.3E-07 55.6 3.4 25 162-186 7-31 (205)
303 1ls1_A Signal recognition part 94.2 0.14 4.6E-06 53.4 9.3 88 162-252 98-189 (295)
304 2ga8_A Hypothetical 39.9 kDa p 94.2 0.049 1.7E-06 57.5 5.8 31 157-187 19-49 (359)
305 3cmu_A Protein RECA, recombina 94.2 0.096 3.3E-06 67.7 9.4 86 161-254 1426-1516(2050)
306 3umf_A Adenylate kinase; rossm 94.1 0.033 1.1E-06 55.0 4.2 26 161-186 28-53 (217)
307 1tev_A UMP-CMP kinase; ploop, 94.1 0.03 1E-06 54.4 3.9 25 162-186 3-27 (196)
308 2jaq_A Deoxyguanosine kinase; 94.1 0.028 9.7E-07 55.1 3.7 23 164-186 2-24 (205)
309 3tau_A Guanylate kinase, GMP k 94.1 0.029 9.8E-07 55.4 3.7 26 161-186 7-32 (208)
310 2iyv_A Shikimate kinase, SK; t 94.1 0.023 7.9E-07 54.7 3.0 24 163-186 3-26 (184)
311 3a00_A Guanylate kinase, GMP k 94.1 0.022 7.7E-07 55.0 2.9 24 163-186 2-25 (186)
312 1ye8_A Protein THEP1, hypothet 94.1 0.03 1E-06 53.5 3.8 23 164-186 2-24 (178)
313 2bdt_A BH3686; alpha-beta prot 94.1 0.029 9.9E-07 54.3 3.6 22 163-184 3-24 (189)
314 1cke_A CK, MSSA, protein (cyti 94.0 0.03 1E-06 56.1 3.8 24 163-186 6-29 (227)
315 1xjc_A MOBB protein homolog; s 94.0 0.033 1.1E-06 52.3 3.8 27 161-187 3-29 (169)
316 3asz_A Uridine kinase; cytidin 94.0 0.033 1.1E-06 55.0 3.9 26 161-186 5-30 (211)
317 2yvu_A Probable adenylyl-sulfa 94.0 0.038 1.3E-06 53.3 4.3 27 161-187 12-38 (186)
318 2r44_A Uncharacterized protein 94.0 0.033 1.1E-06 59.5 4.1 44 139-186 27-70 (331)
319 1y63_A LMAJ004144AAA protein; 93.9 0.032 1.1E-06 53.8 3.6 24 162-185 10-33 (184)
320 2hf9_A Probable hydrogenase ni 93.9 0.044 1.5E-06 54.7 4.8 36 151-186 27-62 (226)
321 3cm0_A Adenylate kinase; ATP-b 93.9 0.035 1.2E-06 53.5 3.9 25 162-186 4-28 (186)
322 2qor_A Guanylate kinase; phosp 93.9 0.026 8.9E-07 55.5 3.0 25 162-186 12-36 (204)
323 2j41_A Guanylate kinase; GMP, 93.9 0.033 1.1E-06 54.8 3.8 25 162-186 6-30 (207)
324 1e6c_A Shikimate kinase; phosp 93.9 0.028 9.7E-07 53.4 3.2 24 163-186 3-26 (173)
325 2c95_A Adenylate kinase 1; tra 93.9 0.032 1.1E-06 54.2 3.6 25 162-186 9-33 (196)
326 2bwj_A Adenylate kinase 5; pho 93.9 0.032 1.1E-06 54.4 3.6 25 162-186 12-36 (199)
327 1uj2_A Uridine-cytidine kinase 93.9 0.033 1.1E-06 56.8 3.8 27 160-186 20-46 (252)
328 4gp7_A Metallophosphoesterase; 93.9 0.025 8.7E-07 53.7 2.7 22 162-183 9-30 (171)
329 2j37_W Signal recognition part 93.9 0.5 1.7E-05 52.9 13.6 38 161-201 100-137 (504)
330 1ukz_A Uridylate kinase; trans 93.9 0.039 1.3E-06 54.1 4.2 26 161-186 14-39 (203)
331 1uf9_A TT1252 protein; P-loop, 93.9 0.034 1.2E-06 54.4 3.7 26 160-185 6-31 (203)
332 1ixz_A ATP-dependent metallopr 93.9 0.081 2.8E-06 53.9 6.7 23 164-186 51-73 (254)
333 1gvn_B Zeta; postsegregational 93.8 0.049 1.7E-06 56.6 5.1 26 161-186 32-57 (287)
334 2if2_A Dephospho-COA kinase; a 93.8 0.031 1E-06 54.9 3.3 22 163-184 2-23 (204)
335 3fwy_A Light-independent proto 93.8 0.044 1.5E-06 57.6 4.7 41 160-203 46-86 (314)
336 2wsm_A Hydrogenase expression/ 93.8 0.039 1.3E-06 54.9 4.1 38 149-186 17-54 (221)
337 2bbw_A Adenylate kinase 4, AK4 93.8 0.035 1.2E-06 56.4 3.8 25 162-186 27-51 (246)
338 1g8p_A Magnesium-chelatase 38 93.8 0.037 1.3E-06 59.6 4.2 46 139-186 24-69 (350)
339 3hws_A ATP-dependent CLP prote 93.8 0.055 1.9E-06 58.6 5.6 45 140-186 16-75 (363)
340 2plr_A DTMP kinase, probable t 93.8 0.037 1.3E-06 54.6 3.9 24 163-186 5-28 (213)
341 2pt5_A Shikimate kinase, SK; a 93.7 0.039 1.3E-06 52.1 3.7 23 164-186 2-24 (168)
342 1lvg_A Guanylate kinase, GMP k 93.7 0.032 1.1E-06 54.5 3.2 24 163-186 5-28 (198)
343 1qf9_A UMP/CMP kinase, protein 93.7 0.039 1.3E-06 53.5 3.8 25 162-186 6-30 (194)
344 2cdn_A Adenylate kinase; phosp 93.7 0.039 1.3E-06 54.0 3.8 25 162-186 20-44 (201)
345 3ney_A 55 kDa erythrocyte memb 93.7 0.039 1.3E-06 53.4 3.6 26 161-186 18-43 (197)
346 1ex7_A Guanylate kinase; subst 93.7 0.032 1.1E-06 53.5 3.0 24 163-186 2-25 (186)
347 2qt1_A Nicotinamide riboside k 93.7 0.036 1.2E-06 54.6 3.5 25 162-186 21-45 (207)
348 2pbr_A DTMP kinase, thymidylat 93.6 0.04 1.4E-06 53.4 3.8 23 164-186 2-24 (195)
349 3vr4_D V-type sodium ATPase su 93.6 0.11 3.8E-06 56.6 7.4 89 162-253 151-258 (465)
350 2grj_A Dephospho-COA kinase; T 93.6 0.042 1.5E-06 53.2 3.8 26 161-186 11-36 (192)
351 1jjv_A Dephospho-COA kinase; P 93.6 0.035 1.2E-06 54.5 3.3 22 163-184 3-24 (206)
352 1um8_A ATP-dependent CLP prote 93.6 0.065 2.2E-06 58.3 5.7 25 162-186 72-96 (376)
353 1aky_A Adenylate kinase; ATP:A 93.5 0.045 1.5E-06 54.5 3.9 25 162-186 4-28 (220)
354 2p5t_B PEZT; postsegregational 93.5 0.054 1.8E-06 55.2 4.5 26 161-186 31-56 (253)
355 2vli_A Antibiotic resistance p 93.4 0.033 1.1E-06 53.5 2.7 25 162-186 5-29 (183)
356 3fb4_A Adenylate kinase; psych 93.4 0.045 1.5E-06 54.2 3.8 23 164-186 2-24 (216)
357 3aez_A Pantothenate kinase; tr 93.4 0.044 1.5E-06 57.6 3.9 28 160-187 88-115 (312)
358 2jeo_A Uridine-cytidine kinase 93.4 0.05 1.7E-06 55.1 4.2 26 161-186 24-49 (245)
359 2ffh_A Protein (FFH); SRP54, s 93.4 0.43 1.5E-05 52.1 11.7 26 162-187 98-123 (425)
360 3a4m_A L-seryl-tRNA(SEC) kinas 93.4 0.046 1.6E-06 56.0 3.9 25 162-186 4-28 (260)
361 1rj9_A FTSY, signal recognitio 93.4 0.059 2E-06 56.4 4.7 27 161-187 101-127 (304)
362 1znw_A Guanylate kinase, GMP k 93.4 0.043 1.5E-06 54.0 3.5 25 162-186 20-44 (207)
363 2wwf_A Thymidilate kinase, put 93.3 0.046 1.6E-06 53.9 3.7 32 162-195 10-41 (212)
364 4e22_A Cytidylate kinase; P-lo 93.3 0.043 1.5E-06 55.9 3.4 26 161-186 26-51 (252)
365 2z0h_A DTMP kinase, thymidylat 93.3 0.05 1.7E-06 52.9 3.8 23 164-186 2-24 (197)
366 1nn5_A Similar to deoxythymidy 93.3 0.052 1.8E-06 53.6 4.0 32 162-195 9-40 (215)
367 1tue_A Replication protein E1; 93.3 0.091 3.1E-06 50.6 5.4 37 150-186 45-82 (212)
368 1htw_A HI0065; nucleotide-bind 93.3 0.052 1.8E-06 50.6 3.6 26 161-186 32-57 (158)
369 1gtv_A TMK, thymidylate kinase 93.2 0.029 1E-06 55.5 2.0 24 163-186 1-24 (214)
370 1z6g_A Guanylate kinase; struc 93.2 0.04 1.4E-06 54.7 2.9 25 162-186 23-47 (218)
371 3dl0_A Adenylate kinase; phosp 93.1 0.048 1.6E-06 54.1 3.3 23 164-186 2-24 (216)
372 3sr0_A Adenylate kinase; phosp 93.0 0.059 2E-06 52.8 3.8 23 164-186 2-24 (206)
373 3nbx_X ATPase RAVA; AAA+ ATPas 93.0 0.055 1.9E-06 60.7 4.0 43 140-186 23-65 (500)
374 3tlx_A Adenylate kinase 2; str 93.0 0.064 2.2E-06 54.3 4.1 26 161-186 28-53 (243)
375 1zd8_A GTP:AMP phosphotransfer 93.0 0.048 1.6E-06 54.5 3.2 25 162-186 7-31 (227)
376 2b8t_A Thymidine kinase; deoxy 92.9 0.028 9.5E-07 55.7 1.3 110 162-282 12-127 (223)
377 1zak_A Adenylate kinase; ATP:A 92.9 0.053 1.8E-06 54.0 3.3 25 162-186 5-29 (222)
378 1s96_A Guanylate kinase, GMP k 92.9 0.056 1.9E-06 53.6 3.4 25 162-186 16-40 (219)
379 2i3b_A HCR-ntpase, human cance 92.9 0.053 1.8E-06 52.3 3.2 25 163-187 2-26 (189)
380 2yhs_A FTSY, cell division pro 92.8 0.42 1.4E-05 52.8 10.6 26 162-187 293-318 (503)
381 3tqc_A Pantothenate kinase; bi 92.8 0.082 2.8E-06 55.5 4.7 26 161-186 91-116 (321)
382 2pez_A Bifunctional 3'-phospho 92.8 0.069 2.4E-06 51.0 3.9 25 162-186 5-29 (179)
383 2f1r_A Molybdopterin-guanine d 92.8 0.048 1.6E-06 51.6 2.6 25 163-187 3-27 (171)
384 3b9q_A Chloroplast SRP recepto 92.8 0.084 2.9E-06 55.2 4.8 26 162-187 100-125 (302)
385 1m7g_A Adenylylsulfate kinase; 92.7 0.069 2.4E-06 52.7 3.9 27 161-187 24-50 (211)
386 3r20_A Cytidylate kinase; stru 92.7 0.067 2.3E-06 53.3 3.8 25 162-186 9-33 (233)
387 1g41_A Heat shock protein HSLU 92.7 0.062 2.1E-06 58.9 3.8 46 139-186 15-74 (444)
388 3ake_A Cytidylate kinase; CMP 92.7 0.068 2.3E-06 52.5 3.8 23 164-186 4-26 (208)
389 3d3q_A TRNA delta(2)-isopenten 92.6 0.063 2.2E-06 56.6 3.6 24 163-186 8-31 (340)
390 3nwj_A ATSK2; P loop, shikimat 92.6 0.058 2E-06 54.6 3.2 24 163-186 49-72 (250)
391 2v54_A DTMP kinase, thymidylat 92.6 0.061 2.1E-06 52.6 3.3 25 162-186 4-28 (204)
392 1np6_A Molybdopterin-guanine d 92.6 0.077 2.6E-06 50.3 3.8 25 162-186 6-30 (174)
393 2c61_A A-type ATP synthase non 92.4 0.15 5E-06 55.9 6.2 92 162-253 152-259 (469)
394 2xb4_A Adenylate kinase; ATP-b 92.4 0.077 2.6E-06 52.9 3.7 23 164-186 2-24 (223)
395 1e4v_A Adenylate kinase; trans 92.4 0.075 2.6E-06 52.5 3.6 23 164-186 2-24 (214)
396 3be4_A Adenylate kinase; malar 92.3 0.076 2.6E-06 52.6 3.6 24 163-186 6-29 (217)
397 2ehv_A Hypothetical protein PH 92.3 0.068 2.3E-06 54.3 3.3 24 162-185 30-53 (251)
398 2onk_A Molybdate/tungstate ABC 92.3 0.075 2.6E-06 53.5 3.5 24 163-186 25-48 (240)
399 3lnc_A Guanylate kinase, GMP k 92.3 0.048 1.7E-06 54.7 2.1 25 162-186 27-52 (231)
400 1sq5_A Pantothenate kinase; P- 92.3 0.077 2.6E-06 55.8 3.8 26 161-186 79-104 (308)
401 2f6r_A COA synthase, bifunctio 92.2 0.074 2.5E-06 55.1 3.5 23 161-183 74-96 (281)
402 1vht_A Dephospho-COA kinase; s 92.2 0.078 2.7E-06 52.6 3.6 23 162-184 4-26 (218)
403 1a7j_A Phosphoribulokinase; tr 92.2 0.053 1.8E-06 56.4 2.3 26 161-186 4-29 (290)
404 3p32_A Probable GTPase RV1496/ 92.1 0.16 5.5E-06 54.5 6.1 36 151-186 66-103 (355)
405 1ak2_A Adenylate kinase isoenz 92.1 0.097 3.3E-06 52.5 4.1 25 162-186 16-40 (233)
406 2og2_A Putative signal recogni 92.0 0.12 4E-06 55.3 4.9 26 162-187 157-182 (359)
407 2zts_A Putative uncharacterize 92.0 0.26 8.9E-06 49.8 7.4 48 162-213 30-77 (251)
408 3b85_A Phosphate starvation-in 91.9 0.068 2.3E-06 52.5 2.6 31 162-193 22-52 (208)
409 3tif_A Uncharacterized ABC tra 91.9 0.071 2.4E-06 53.5 2.8 25 162-186 31-55 (235)
410 1iy2_A ATP-dependent metallopr 91.9 0.082 2.8E-06 54.7 3.4 23 164-186 75-97 (278)
411 3crm_A TRNA delta(2)-isopenten 91.9 0.094 3.2E-06 54.9 3.7 24 163-186 6-29 (323)
412 2pcj_A ABC transporter, lipopr 91.8 0.069 2.4E-06 53.2 2.6 25 162-186 30-54 (224)
413 1zu4_A FTSY; GTPase, signal re 91.8 0.14 4.7E-06 54.0 5.0 27 161-187 104-130 (320)
414 3exa_A TRNA delta(2)-isopenten 91.8 0.085 2.9E-06 54.6 3.2 25 162-186 3-27 (322)
415 1cr0_A DNA primase/helicase; R 91.7 0.29 9.8E-06 51.1 7.4 50 162-215 35-84 (296)
416 1q57_A DNA primase/helicase; d 91.7 0.66 2.2E-05 52.5 10.9 51 162-216 242-292 (503)
417 3k1j_A LON protease, ATP-depen 91.7 0.11 3.8E-06 60.4 4.5 44 139-186 41-84 (604)
418 3cmu_A Protein RECA, recombina 91.6 0.38 1.3E-05 62.2 9.5 85 162-254 383-472 (2050)
419 2cbz_A Multidrug resistance-as 91.5 0.083 2.8E-06 53.1 2.8 25 162-186 31-55 (237)
420 3gqb_B V-type ATP synthase bet 91.5 0.27 9.1E-06 53.6 6.8 92 162-253 147-261 (464)
421 3end_A Light-independent proto 91.5 0.18 6.2E-06 53.0 5.6 43 160-205 39-81 (307)
422 3a8t_A Adenylate isopentenyltr 91.4 0.084 2.9E-06 55.4 2.8 25 162-186 40-64 (339)
423 2d2e_A SUFC protein; ABC-ATPas 91.4 0.1 3.5E-06 52.9 3.3 24 162-185 29-52 (250)
424 3io3_A DEHA2D07832P; chaperone 91.3 0.23 7.9E-06 52.9 6.2 50 157-207 13-62 (348)
425 3gfo_A Cobalt import ATP-bindi 91.3 0.087 3E-06 54.1 2.8 25 162-186 34-58 (275)
426 3mfy_A V-type ATP synthase alp 91.3 0.58 2E-05 52.0 9.3 49 161-214 226-275 (588)
427 3foz_A TRNA delta(2)-isopenten 91.3 0.12 4.1E-06 53.4 3.8 25 162-186 10-34 (316)
428 1b0u_A Histidine permease; ABC 91.3 0.088 3E-06 53.8 2.8 25 162-186 32-56 (262)
429 3bgw_A DNAB-like replicative h 91.2 0.72 2.5E-05 51.0 10.3 49 162-215 197-245 (444)
430 1sgw_A Putative ABC transporte 91.2 0.078 2.7E-06 52.2 2.2 24 163-186 36-59 (214)
431 1ji0_A ABC transporter; ATP bi 91.2 0.093 3.2E-06 52.9 2.8 25 162-186 32-56 (240)
432 2zu0_C Probable ATP-dependent 91.1 0.11 3.7E-06 53.3 3.3 24 162-185 46-69 (267)
433 4g1u_C Hemin import ATP-bindin 91.1 0.093 3.2E-06 53.7 2.8 25 162-186 37-61 (266)
434 2olj_A Amino acid ABC transpor 91.1 0.094 3.2E-06 53.5 2.8 25 162-186 50-74 (263)
435 1oix_A RAS-related protein RAB 91.1 0.11 3.9E-06 50.1 3.3 25 162-186 29-53 (191)
436 1g6h_A High-affinity branched- 91.1 0.095 3.2E-06 53.4 2.8 25 162-186 33-57 (257)
437 3lv8_A DTMP kinase, thymidylat 91.1 0.29 1E-05 48.8 6.3 36 162-199 27-62 (236)
438 2pze_A Cystic fibrosis transme 91.1 0.097 3.3E-06 52.3 2.8 25 162-186 34-58 (229)
439 1q3t_A Cytidylate kinase; nucl 91.0 0.14 4.9E-06 51.4 4.1 25 162-186 16-40 (236)
440 2ff7_A Alpha-hemolysin translo 91.0 0.098 3.4E-06 52.9 2.8 25 162-186 35-59 (247)
441 1mv5_A LMRA, multidrug resista 91.0 0.1 3.5E-06 52.7 2.9 25 162-186 28-52 (243)
442 2r8r_A Sensor protein; KDPD, P 91.0 0.24 8.2E-06 48.6 5.4 37 164-203 8-44 (228)
443 4eaq_A DTMP kinase, thymidylat 91.0 0.14 4.9E-06 51.1 3.9 25 162-186 26-50 (229)
444 1yrb_A ATP(GTP)binding protein 90.9 0.14 4.9E-06 52.2 4.1 25 162-186 14-38 (262)
445 2v9p_A Replication protein E1; 90.9 0.12 4.1E-06 53.7 3.4 26 161-186 125-150 (305)
446 3cmw_A Protein RECA, recombina 90.9 0.36 1.2E-05 61.6 8.3 85 162-254 383-472 (1706)
447 1vpl_A ABC transporter, ATP-bi 90.9 0.1 3.5E-06 53.0 2.8 25 162-186 41-65 (256)
448 1cp2_A CP2, nitrogenase iron p 90.9 0.26 8.8E-06 50.6 6.0 39 163-204 2-40 (269)
449 2qmh_A HPR kinase/phosphorylas 90.9 0.11 3.8E-06 49.7 2.9 24 163-186 35-58 (205)
450 2eyu_A Twitching motility prot 90.9 0.14 4.9E-06 52.1 3.9 26 161-186 24-49 (261)
451 4tmk_A Protein (thymidylate ki 90.9 0.34 1.2E-05 47.5 6.5 25 163-187 4-28 (213)
452 1ltq_A Polynucleotide kinase; 90.8 0.13 4.4E-06 53.9 3.6 23 163-185 3-25 (301)
453 3iqw_A Tail-anchored protein t 90.8 0.27 9.4E-06 52.0 6.1 47 158-207 12-58 (334)
454 3zvl_A Bifunctional polynucleo 90.7 0.12 4E-06 57.0 3.3 27 160-186 256-282 (416)
455 2ghi_A Transport protein; mult 90.7 0.11 3.7E-06 53.0 2.8 25 162-186 46-70 (260)
456 2qi9_C Vitamin B12 import ATP- 90.7 0.11 3.8E-06 52.5 2.8 25 162-186 26-50 (249)
457 2ixe_A Antigen peptide transpo 90.7 0.11 3.8E-06 53.4 2.8 25 162-186 45-69 (271)
458 2yz2_A Putative ABC transporte 90.5 0.12 4E-06 53.0 2.8 25 162-186 33-57 (266)
459 2nq2_C Hypothetical ABC transp 90.5 0.12 4E-06 52.6 2.8 25 162-186 31-55 (253)
460 2f9l_A RAB11B, member RAS onco 90.5 0.15 5.1E-06 49.6 3.5 24 162-185 5-28 (199)
461 3eph_A TRNA isopentenyltransfe 90.4 0.16 5.3E-06 54.7 3.8 24 163-186 3-26 (409)
462 2ihy_A ABC transporter, ATP-bi 90.4 0.12 4E-06 53.3 2.8 25 162-186 47-71 (279)
463 1nlf_A Regulatory protein REPA 90.3 0.13 4.5E-06 53.1 3.1 25 162-186 30-54 (279)
464 2dyk_A GTP-binding protein; GT 90.3 0.17 5.8E-06 46.9 3.6 23 163-185 2-24 (161)
465 2r9v_A ATP synthase subunit al 90.3 0.34 1.2E-05 53.4 6.4 87 162-253 175-277 (515)
466 2wji_A Ferrous iron transport 90.3 0.16 5.6E-06 47.5 3.5 23 163-185 4-26 (165)
467 4edh_A DTMP kinase, thymidylat 90.2 0.45 1.5E-05 46.7 6.7 26 162-187 6-31 (213)
468 1svm_A Large T antigen; AAA+ f 90.2 0.16 5.5E-06 54.7 3.7 27 160-186 167-193 (377)
469 3oaa_A ATP synthase subunit al 90.2 1 3.4E-05 49.5 9.9 90 161-254 161-265 (513)
470 3cf2_A TER ATPase, transitiona 90.2 0.26 8.9E-06 58.3 5.7 71 162-254 511-581 (806)
471 3cmw_A Protein RECA, recombina 90.1 0.47 1.6E-05 60.6 8.3 84 162-253 1431-1519(1706)
472 3gmt_A Adenylate kinase; ssgci 90.0 0.19 6.6E-06 49.7 3.7 24 163-186 9-32 (230)
473 3kjh_A CO dehydrogenase/acetyl 89.9 0.36 1.2E-05 48.8 6.0 42 165-209 3-44 (254)
474 3sop_A Neuronal-specific septi 89.9 0.16 5.6E-06 52.0 3.3 23 164-186 4-26 (270)
475 2v3c_C SRP54, signal recogniti 89.8 0.14 4.9E-06 56.2 3.0 26 162-187 99-124 (432)
476 2ck3_A ATP synthase subunit al 89.7 0.51 1.8E-05 52.1 7.2 94 161-254 161-273 (510)
477 2ocp_A DGK, deoxyguanosine kin 89.7 0.2 6.8E-06 50.5 3.8 25 162-186 2-26 (241)
478 2pjz_A Hypothetical protein ST 89.6 0.15 5.1E-06 52.0 2.7 24 162-185 30-53 (263)
479 2zej_A Dardarin, leucine-rich 89.6 0.16 5.5E-06 48.6 2.9 22 164-185 4-25 (184)
480 2vp4_A Deoxynucleoside kinase; 89.6 0.13 4.5E-06 51.4 2.3 25 161-185 19-43 (230)
481 3ld9_A DTMP kinase, thymidylat 89.6 0.43 1.5E-05 47.1 5.9 28 160-187 19-46 (223)
482 2afh_E Nitrogenase iron protei 89.5 0.31 1.1E-05 50.6 5.3 39 163-204 3-41 (289)
483 3nh6_A ATP-binding cassette SU 89.5 0.15 5.1E-06 53.2 2.7 25 162-186 80-104 (306)
484 1u0j_A DNA replication protein 89.4 0.44 1.5E-05 48.1 5.9 40 147-186 87-128 (267)
485 2orw_A Thymidine kinase; TMTK, 89.4 0.23 7.7E-06 47.6 3.7 24 163-186 4-27 (184)
486 3fvq_A Fe(3+) IONS import ATP- 89.3 0.18 6.3E-06 53.6 3.2 25 162-186 30-54 (359)
487 2ce2_X GTPase HRAS; signaling 89.2 0.2 6.7E-06 46.6 3.1 22 164-185 5-26 (166)
488 2ged_A SR-beta, signal recogni 89.2 0.39 1.3E-05 46.1 5.4 24 162-185 48-71 (193)
489 1z2a_A RAS-related protein RAB 89.2 0.21 7.1E-06 46.7 3.2 24 162-185 5-28 (168)
490 2wjg_A FEOB, ferrous iron tran 89.1 0.2 6.8E-06 48.0 3.2 24 162-185 7-30 (188)
491 3tui_C Methionine import ATP-b 89.0 0.2 6.9E-06 53.3 3.3 25 162-186 54-78 (366)
492 2bbs_A Cystic fibrosis transme 89.0 0.17 5.8E-06 52.4 2.7 25 162-186 64-88 (290)
493 1tf7_A KAIC; homohexamer, hexa 88.9 0.57 2E-05 53.3 7.3 26 162-187 281-306 (525)
494 3upu_A ATP-dependent DNA helic 88.9 0.37 1.3E-05 53.8 5.6 40 147-187 31-70 (459)
495 1z47_A CYSA, putative ABC-tran 88.9 0.21 7.3E-06 53.1 3.3 25 162-186 41-65 (355)
496 4dzz_A Plasmid partitioning pr 88.8 0.33 1.1E-05 47.3 4.6 42 163-207 2-44 (206)
497 2qe7_A ATP synthase subunit al 88.8 1 3.4E-05 49.7 8.6 88 161-253 161-264 (502)
498 1pgv_A TMD-1, tropomodulin TMD 88.8 0.32 1.1E-05 46.8 4.2 36 590-625 96-136 (197)
499 3vr4_A V-type sodium ATPase ca 88.7 1.1 3.7E-05 50.1 8.9 48 161-213 231-279 (600)
500 3con_A GTPase NRAS; structural 88.7 0.23 7.8E-06 47.7 3.2 23 163-185 22-44 (190)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=5.9e-45 Score=424.66 Aligned_cols=310 Identities=18% Similarity=0.227 Sum_probs=241.8
Q ss_pred cccchHHHHHHHHHHhcCC---CeeEEEEEcCCCChHHHHHHHHHH--HHhhhcCCCcEEEEEEECCCC--CHHHHHHHH
Q 042574 142 AGKKTKKVVERIWEDLMGD---KVTKIGVWGMGGIGKTTIMKEINN--RLQKETNKFNVVIWVTVSQPL--DLIKLQTEI 214 (929)
Q Consensus 142 vGr~~~~~~~~l~~~l~~~---~~~vv~I~G~gGiGKTtLa~~v~~--~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~i 214 (929)
||| +.++++|.++|.++ +.++|+|+||||+||||||+++|+ +. ....+|+.++||++++.+ ++..++..|
T Consensus 131 ~GR--~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIR--EYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQ-LIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCC--HHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSS-TBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCc--hHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhH-HHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 699 78888999988643 589999999999999999999998 33 456899999999999985 889999999
Q ss_pred HHHhcCCCC-------CCccHHHHHHHHHHHHHhcC-cEEEEEecCCCcCCccccccCCCCCCCCcEEEEEeCccccccc
Q 042574 215 ATALKQSLP-------ENEDKVRRAGRLSEMLKAKA-KFVLILDDMWEAFPLEEVGIPEPSEENGCKLVITTRSLGVSRS 286 (929)
Q Consensus 215 ~~~l~~~~~-------~~~~~~~~~~~l~~~l~~~~-~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~~ 286 (929)
+.+++.... ...+.......+.+.+ +++ |+||||||||+..++ .+. ..+||+||||||++.++..
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~ 280 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNAL-IDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNA 280 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHH-TTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHH-cCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHH
Confidence 999986421 1123344455666666 454 999999999997644 111 1279999999999999988
Q ss_pred CCcc-e-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHHhhhcCCCChhHHHHHHHHHhh
Q 042574 287 MDCK-E-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVASCMRGVDEIHEWRNALNELRG 364 (929)
Q Consensus 287 ~~~~-~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~l~~l~~ 364 (929)
++.. . |+|++|++++||+||.+.++... .++.+++++++|+++|+|+||||+++|+.|+.+ .|.+. +.+..
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~----~w~~~-~~l~~ 353 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK----TFEKM-AQLNN 353 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS----SHHHH-HHHHH
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc----hHHHH-HHhHH
Confidence 7633 4 99999999999999999976543 246788899999999999999999999999875 25544 44433
Q ss_pred hhccCCCCchhhhhhHHhhcccCCChhhhhHhh-----------hhccCCCCCccCHHHHHHHHHHc--CcccchhcHHH
Q 042574 365 LVRSRNGVNADVLGRLEFSYHRLKDDKVQQCFL-----------YCALYPEDFAIPKEELIDYWIAE--GFIEEVKDVQA 431 (929)
Q Consensus 365 ~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-----------~~a~fp~~~~i~~~~li~~w~a~--g~i~~~~~~~~ 431 (929)
..... ....+..++.+||+.|| +++|.||+ |||+||+++.|+ ++.|+|+ ||+...+....
T Consensus 354 ~l~~~--~~~~i~~~l~~Sy~~L~-~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~ 426 (549)
T 2a5y_B 354 KLESR--GLVGVECITPYSYKSLA-MALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQL 426 (549)
T ss_dssp HHHHH--CSSTTCCCSSSSSSSHH-HHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCC
T ss_pred Hhhcc--cHHHHHHHHhccccccc-HHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCC
Confidence 32211 13578999999999999 89999999 999999999998 8899999 99976432223
Q ss_pred HHHhHHHHHHHHHHccccccccC--CCeEEechHHHHHHHHHhccCC
Q 042574 432 KYDRGHTILNRLVNCCLLERAED--GGCVKMHDLIRDMALRIKSKSP 476 (929)
Q Consensus 432 ~~~~~~~~l~~L~~~~ll~~~~~--~~~~~mHdlv~~~a~~~~~~~~ 476 (929)
.++.++ |+++|+++||++.... ..+|+|||+||++|++++.+++
T Consensus 427 ~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 427 DDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp THHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 445565 9999999999998643 3689999999999999887653
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.1e-37 Score=361.95 Aligned_cols=285 Identities=16% Similarity=0.229 Sum_probs=221.9
Q ss_pred cccccchHHHHHHHHHHhcC-CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcE-EEEEEECCCCCHHHHHHHHHHH
Q 042574 140 TLAGKKTKKVVERIWEDLMG-DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNV-VIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 140 ~~vGr~~~~~~~~l~~~l~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
..||| +.++++|.++|.+ +..++|+|+||||+||||||+++|++. ....+|+. ++|+++++.++...++..|+..
T Consensus 129 ~~VGR--e~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~-rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 129 YNVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp SCCCC--HHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHC-HHHHHHSSCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CCCCc--HHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhh-HHHHhCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 34999 7788889888865 458999999999999999999999875 33457886 9999999999988888888775
Q ss_pred hcCC---CCCC--------ccHHHHHHHHHHHH--HhcCcEEEEEecCCCcCCccccccCCCCCCCCcEEEEEeCccccc
Q 042574 218 LKQS---LPEN--------EDKVRRAGRLSEML--KAKAKFVLILDDMWEAFPLEEVGIPEPSEENGCKLVITTRSLGVS 284 (929)
Q Consensus 218 l~~~---~~~~--------~~~~~~~~~l~~~l--~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~ 284 (929)
++.. .... .+.......+.+.+ ..++|+||||||||+...|+.+ ..||+||||||++.++
T Consensus 206 L~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va 278 (1221)
T 1vt4_I 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVT 278 (1221)
T ss_dssp HHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHH
T ss_pred HhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHH
Confidence 4321 1111 01122233344433 1468999999999997777654 2689999999999988
Q ss_pred ccCCcce-Eecc------cCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHHhhhcCCC-ChhHHH
Q 042574 285 RSMDCKE-IGVE------LLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVASCMRGVD-EIHEWR 356 (929)
Q Consensus 285 ~~~~~~~-~~l~------~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~-~~~~w~ 356 (929)
..+.... +.++ +|+++|||+||.+.++.. ..++..++ |+|+||||+++|+.|+.+. +..+|.
T Consensus 279 ~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~ 348 (1221)
T 1vt4_I 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWK 348 (1221)
T ss_dssp HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHH
T ss_pred HhcCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHh
Confidence 6544333 6666 999999999999885332 12233333 9999999999999999863 567786
Q ss_pred HHHHHHhhhhccCCCCchhhhhhHHhhcccCCChhh-hhHhhhhccCCCCCccCHHHHHHHHHHcCcccchhcHHHHHHh
Q 042574 357 NALNELRGLVRSRNGVNADVLGRLEFSYHRLKDDKV-QQCFLYCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQAKYDR 435 (929)
Q Consensus 357 ~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~-k~cfl~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~ 435 (929)
.. ....+..+|.+||+.|| ++. |.||+|||+||+++.|+.+.++..|+++| . +.
T Consensus 349 ~~-------------~~~~I~aaLelSYd~Lp-~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG---e--------ed 403 (1221)
T 1vt4_I 349 HV-------------NCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI---K--------SD 403 (1221)
T ss_dssp HC-------------SCHHHHHHHHHHHHHSC-TTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC---S--------HH
T ss_pred cC-------------ChhHHHHHHHHHHHhCC-HHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC---H--------HH
Confidence 42 13679999999999999 677 99999999999999999999999999887 1 35
Q ss_pred HHHHHHHHHHccccccccCCCeEEechHHHHHHH
Q 042574 436 GHTILNRLVNCCLLERAEDGGCVKMHDLIRDMAL 469 (929)
Q Consensus 436 ~~~~l~~L~~~~ll~~~~~~~~~~mHdlv~~~a~ 469 (929)
++.++++|+++||++......+|+|||++++++.
T Consensus 404 Ae~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 7789999999999998544578999999999653
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-36 Score=394.41 Aligned_cols=311 Identities=23% Similarity=0.366 Sum_probs=245.2
Q ss_pred cccccccccchHHHHHHHHHHhc--CCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcC-CCcEEEEEEECCCCC--HHHH
Q 042574 136 LTTATLAGKKTKKVVERIWEDLM--GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETN-KFNVVIWVTVSQPLD--LIKL 210 (929)
Q Consensus 136 ~~~~~~vGr~~~~~~~~l~~~l~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-~f~~~~wv~~s~~~~--~~~~ 210 (929)
.+...|||| ++++++|.+.|. +++.++|+|+||||+||||||+++|++...... +++.++||++++..+ ....
T Consensus 121 ~~~~~~vgR--~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 121 QRPVIFVTR--KKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCSSCCCC--HHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCceeccH--HHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 344679999 788899999884 456899999999999999999999998643344 456788999998543 4445
Q ss_pred HHHHHHHhcCCCCC----CccHHHHHHHHHHHHHhcC--cEEEEEecCCCcCCccccccCCCCCCCCcEEEEEeCccccc
Q 042574 211 QTEIATALKQSLPE----NEDKVRRAGRLSEMLKAKA--KFVLILDDMWEAFPLEEVGIPEPSEENGCKLVITTRSLGVS 284 (929)
Q Consensus 211 ~~~i~~~l~~~~~~----~~~~~~~~~~l~~~l~~~~--~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~ 284 (929)
+..++..+...... ..+.......+...+ .++ |+||||||||+..+|+.+ ++||+||||||++.++
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLM-LRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHT-SSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHH-hccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHH
Confidence 66777777654321 223344444444444 444 999999999988766654 5689999999999998
Q ss_pred cc-CCcce-Eeccc-CCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHHhhhcCCCChhHHHHHHHH
Q 042574 285 RS-MDCKE-IGVEL-LSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVASCMRGVDEIHEWRNALNE 361 (929)
Q Consensus 285 ~~-~~~~~-~~l~~-L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~l~~ 361 (929)
.. ++... +.+.+ |++++|++||...++.. .+..++++++|+++|+|+||||+++|++|+.+. ..|...++.
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~ 344 (1249)
T 3sfz_A 271 DSVMGPKHVVPVESGLGREKGLEILSLFVNMK----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQ 344 (1249)
T ss_dssp TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHH
T ss_pred HhhcCCceEEEecCCCCHHHHHHHHHHhhCCC----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHH
Confidence 54 34444 89986 99999999999887543 334556799999999999999999999998754 479999998
Q ss_pred HhhhhccC-----CCCchhhhhhHHhhcccCCChhhhhHhhhhccCCCCCccCHHHHHHHHHHcCcccchhcHHHHHHhH
Q 042574 362 LRGLVRSR-----NGVNADVLGRLEFSYHRLKDDKVQQCFLYCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQAKYDRG 436 (929)
Q Consensus 362 l~~~~~~~-----~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~ 436 (929)
+....... ......+..++.+||+.|| ++.|.||+|||+||+++.|+++.++..|.++ .+.+
T Consensus 345 l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~-~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~~ 411 (1249)
T 3sfz_A 345 LQNKQFKRIRKSSSYDYEALDEAMSISVEMLR-EDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEEV 411 (1249)
T ss_dssp HHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSC-TTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHHH
T ss_pred HhhhhhhhcccccccchHHHHHHHHHHHHhCC-HHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHHH
Confidence 87654321 1223579999999999999 7899999999999999999999999999654 2567
Q ss_pred HHHHHHHHHccccccccCC--CeEEechHHHHHHHHHhccC
Q 042574 437 HTILNRLVNCCLLERAEDG--GCVKMHDLIRDMALRIKSKS 475 (929)
Q Consensus 437 ~~~l~~L~~~~ll~~~~~~--~~~~mHdlv~~~a~~~~~~~ 475 (929)
+.++++|+++||++...++ .+|+|||+||++|+..+.++
T Consensus 412 ~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 412 EDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 8899999999999976554 36999999999999887654
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=334.01 Aligned_cols=308 Identities=23% Similarity=0.349 Sum_probs=233.3
Q ss_pred ccccccccchHHHHHHHHHHhcC--CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCC-cEEEEEEECCCCCHHHHHH-
Q 042574 137 TTATLAGKKTKKVVERIWEDLMG--DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKF-NVVIWVTVSQPLDLIKLQT- 212 (929)
Q Consensus 137 ~~~~~vGr~~~~~~~~l~~~l~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f-~~~~wv~~s~~~~~~~~~~- 212 (929)
+++.+||| +.++++|.+.+.. ++.++|+|+||||+||||||++++++......+| +.++|++++.. +...+..
T Consensus 122 ~~~~~vGR--~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 122 RPVVFVTR--KKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCSSCCCC--HHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCeeccc--HHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 34679999 7888999999873 5678999999999999999999998752214567 57999999876 3333333
Q ss_pred --HHHHHhcCCC----CCCccHHHHHHHHHHHHHh-cCcEEEEEecCCCcCCccccccCCCCCCCCcEEEEEeCcccccc
Q 042574 213 --EIATALKQSL----PENEDKVRRAGRLSEMLKA-KAKFVLILDDMWEAFPLEEVGIPEPSEENGCKLVITTRSLGVSR 285 (929)
Q Consensus 213 --~i~~~l~~~~----~~~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v~~ 285 (929)
.++..++... ....+.......+...+.. .+++||||||+|+...++.+ ..|++||||||+..++.
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGT
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHH
Confidence 3444554211 1122334445555555543 27999999999986555432 46899999999999887
Q ss_pred cCCcceEec---ccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHHhhhcCCCChhHHHHHHHHH
Q 042574 286 SMDCKEIGV---ELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVASCMRGVDEIHEWRNALNEL 362 (929)
Q Consensus 286 ~~~~~~~~l---~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~l~~l 362 (929)
.+....+.+ ++|+.+||++||...++.. .....+.+.+|+++|+|+|+||..+|+.++.+. ..|...++.+
T Consensus 272 ~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l 345 (591)
T 1z6t_A 272 SVMGPKYVVPVESSLGKEKGLEILSLFVNMK----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQL 345 (591)
T ss_dssp TCCSCEEEEECCSSCCHHHHHHHHHHHHTSC----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHH
T ss_pred hcCCCceEeecCCCCCHHHHHHHHHHHhCCC----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHH
Confidence 654333443 5899999999999987652 222345788999999999999999999998753 4799999888
Q ss_pred hhhhccC-----CCCchhhhhhHHhhcccCCChhhhhHhhhhccCCCCCccCHHHHHHHHHHcCcccchhcHHHHHHhHH
Q 042574 363 RGLVRSR-----NGVNADVLGRLEFSYHRLKDDKVQQCFLYCALYPEDFAIPKEELIDYWIAEGFIEEVKDVQAKYDRGH 437 (929)
Q Consensus 363 ~~~~~~~-----~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~a~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~ 437 (929)
....... ......+..++..||+.|| ++.|.||++||+||+++.|+...+...|.++ .+.+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~-~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~~~~ 412 (591)
T 1z6t_A 346 QNKQFKRIRKSSSYDYEALDEAMSISVEMLR-EDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TEEVE 412 (591)
T ss_dssp HSCCCCCSSCCCSSCCHHHHHHHHHHHHTSC-TTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HHHHH
T ss_pred HHhHHHHhhhccccchHHHHHHHHHHHHhCC-HHHHHHHHHccccCCCCccCHHHHHHHhccC------------HHHHH
Confidence 7553211 1223578999999999999 7899999999999999999999999999543 13567
Q ss_pred HHHHHHHHccccccccCC--CeEEechHHHHHHHHHhc
Q 042574 438 TILNRLVNCCLLERAEDG--GCVKMHDLIRDMALRIKS 473 (929)
Q Consensus 438 ~~l~~L~~~~ll~~~~~~--~~~~mHdlv~~~a~~~~~ 473 (929)
.++++|+++||++...++ ..|.||+++|+++.....
T Consensus 413 ~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 413 DILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 889999999999865443 479999999999998743
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=3e-22 Score=238.46 Aligned_cols=159 Identities=23% Similarity=0.266 Sum_probs=132.5
Q ss_pred eEEEcCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCC
Q 042574 478 FMVKAGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTN 557 (929)
Q Consensus 478 ~~~~~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 557 (929)
.+...+.+++.+|.. .++++++|++++|.+..++...+.++++|++|++++|. +..+++..|.++++|++|++++|.
T Consensus 15 ~~~c~~~~l~~ip~~--~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 15 TYQCMDQKLSKVPDD--IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EEECTTSCCSSCCTT--SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEccCCCcccCCCC--CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc-ccccCHHHhhchhhcCEeECCCCc
Confidence 344566778888874 45789999999999999888778899999999999997 666766666899999999999999
Q ss_pred Cccc-CcccccccccceeecccccccccCc-cccccCCCCEEEccCCCCc--cccccccCCCCCCEEEccCCCCccCCCC
Q 042574 558 IEVL-PSSVSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIE--EVPEGMEMLENLSHLYLSSPPLKKFPTG 633 (929)
Q Consensus 558 i~~l-p~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~ 633 (929)
++.+ |..++++++|++|++++|......+ .++++++|++|++++|.+. .+|..++++++|++|++++|.++.+++.
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence 9977 7889999999999999986544444 6999999999999999888 4788899999999999999988877665
Q ss_pred ccCCCC
Q 042574 634 ILPRLR 639 (929)
Q Consensus 634 ~l~~l~ 639 (929)
.++.++
T Consensus 172 ~~~~l~ 177 (606)
T 3vq2_A 172 DLQFLR 177 (606)
T ss_dssp TTHHHH
T ss_pred hhhhhh
Confidence 444433
No 6
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=6.4e-23 Score=242.46 Aligned_cols=159 Identities=24% Similarity=0.275 Sum_probs=126.6
Q ss_pred EEEcCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCC
Q 042574 479 MVKAGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNI 558 (929)
Q Consensus 479 ~~~~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 558 (929)
....+.++.++|.. .++++++|++++|.+..++...+..+++|++|++++|. +..++...|.++++|++|++++|.+
T Consensus 12 ~~c~~~~l~~ip~~--l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 12 YQCMELNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp EECCSSCCSSCCSS--SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEeCCCCccccCCC--ccccccEEEccCCccCccChhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCcC
Confidence 34455677788864 45689999999999988887777789999999999996 6677766678899999999999998
Q ss_pred cccC-cccccccccceeecccccccccCc--cccccCCCCEEEccCCCCcc--ccccccCCCCCCEEEccCCCCccCCCC
Q 042574 559 EVLP-SSVSNLTNLRSLLLRWCRRLKRVP--SVAKLLALQYLDLERTWIEE--VPEGMEMLENLSHLYLSSPPLKKFPTG 633 (929)
Q Consensus 559 ~~lp-~~i~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~ 633 (929)
+.+| ..++++++|++|++++|. +..++ .++++++|++|++++|.+.. +|..+.++++|++|++++|.++.+++.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred CccCHhhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence 8775 678899999999999874 45554 58889999999999998875 688888899999999988887776554
Q ss_pred ccCCCCCc
Q 042574 634 ILPRLRNL 641 (929)
Q Consensus 634 ~l~~l~~L 641 (929)
.++.+++|
T Consensus 168 ~~~~l~~L 175 (570)
T 2z63_A 168 DLRVLHQM 175 (570)
T ss_dssp GGHHHHTC
T ss_pred Hccchhcc
Confidence 44444444
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=6e-23 Score=248.09 Aligned_cols=353 Identities=14% Similarity=0.145 Sum_probs=235.7
Q ss_pred CCCCCCCCCCcccEEEcccCCcCc-----------------cCcHHH-HccCCCCcEEEecCCCCc-ccCcccccccccc
Q 042574 512 IPSNMSPHCKILSTLLLQRNGYLQ-----------------RIPECF-FMHMRGLKVLNLSHTNIE-VLPSSVSNLTNLR 572 (929)
Q Consensus 512 ~~~~~~~~~~~L~~L~l~~~~~~~-----------------~~~~~~-~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~ 572 (929)
+|.. +.++++|++|++++|.... .+|..+ |.++++|++|+|++|.+. .+|..++++++|+
T Consensus 440 IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 4443 4478899999999998444 177775 348999999999999855 7888899999999
Q ss_pred eeecccccccc--cCc-cccccC-------CCCEEEccCCCCccccc--cccCCCCCCEEEccCCCCccCCCCccCCCCC
Q 042574 573 SLLLRWCRRLK--RVP-SVAKLL-------ALQYLDLERTWIEEVPE--GMEMLENLSHLYLSSPPLKKFPTGILPRLRN 640 (929)
Q Consensus 573 ~L~l~~~~~~~--~~~-~~~~l~-------~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 640 (929)
+|++++|..+. .+| .++++. +|++|++++|.+..+|. .+.++++|++|++++|.++.+| .++++++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~ 596 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVK 596 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSE
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCc
Confidence 99999986344 466 566665 99999999999889998 7999999999999999988777 4789999
Q ss_pred ccEEEeecCCchhcccHHHHhccccc-ccEeEEEecccccchhcccccCCCCceeEEEEecccccccccc----c--CcC
Q 042574 641 LYKLKLSFGNEALRETVEEAARLSDG-LDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMI----T--GLE 713 (929)
Q Consensus 641 L~~L~l~~~~~~~~~~~~~l~~l~~~-L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~----~--~~~ 713 (929)
|+.|++++|... .....+..+. + |+.|.+....+..++..........|..+.+..+......+.. . ...
T Consensus 597 L~~L~Ls~N~l~--~lp~~l~~l~-~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 597 LTDLKLDYNQIE--EIPEDFCAFT-DQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp ESEEECCSSCCS--CCCTTSCEEC-TTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred ceEEECcCCccc--cchHHHhhcc-ccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 999999877533 2223466677 6 8888887777665544333333334666665555443211110 0 112
Q ss_pred CCceeEeecccccCCCCcc-cCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchh
Q 042574 714 LPKSVILNNYKICRGEEPI-VLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLL 792 (929)
Q Consensus 714 ~~~~l~L~~~~~~~~~~~~-~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l 792 (929)
.++.+.++.+.+......+ ..+++|+.|.+.++. +..++..... ...+.+.+++ +|+.|+|++| .++.+|.....
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~-~~~~~l~nl~-~L~~L~Ls~N-~L~~lp~~l~~ 749 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNL-MTSIPENSLK-PKDGNYKNTY-LLTTIDLRFN-KLTSLSDDFRA 749 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSS-CTTSCCTTGG-GCCEEECCSS-CCCCCCGGGST
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc-CCccChHHhc-cccccccccC-CccEEECCCC-CCccchHHhhh
Confidence 3555666665555332222 356788888888774 2232211000 0011134455 8999999997 56677642211
Q ss_pred hhcCCccEEEEecCcchhhhhccCcchhhhhhccccccccccCCCcceeeccccc------ccccccccCccccCCCccE
Q 042574 793 PALQNLEVLKVYGCDSIKEIIAVEDEETEKELATNTIINTVTLPRLKKLRFYFLR------EFKRFCSNNGVLVCNSLQE 866 (929)
Q Consensus 793 ~~L~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~------~L~~i~~~~~~~~~p~L~~ 866 (929)
..+++|+.|++++| .++.++ .....+++|+.|+|++++ -...++. ....+++|+.
T Consensus 750 ~~l~~L~~L~Ls~N-~L~~lp----------------~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~--~l~~L~~L~~ 810 (876)
T 4ecn_A 750 TTLPYLSNMDVSYN-CFSSFP----------------TQPLNSSQLKAFGIRHQRDAEGNRILRQWPT--GITTCPSLIQ 810 (876)
T ss_dssp TTCTTCCEEECCSS-CCSSCC----------------CGGGGCTTCCEEECCCCBCTTCCBCCCCCCT--TGGGCSSCCE
T ss_pred ccCCCcCEEEeCCC-CCCccc----------------hhhhcCCCCCEEECCCCCCcccccccccChH--HHhcCCCCCE
Confidence 37889999999986 455443 122368899999997743 2334444 5567889999
Q ss_pred EEEeccCCCccccCCC-CccCCCCCCCCC
Q 042574 867 IKVRGCPKLKRLSLSL-PLLDNGQPSPPP 894 (929)
Q Consensus 867 L~I~~C~~L~~lP~~l-~~l~~~~~~~~~ 894 (929)
|++++|. +..+|..+ ++|+.++++.+|
T Consensus 811 L~Ls~N~-L~~Ip~~l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 811 LQIGSND-IRKVDEKLTPQLYILDIADNP 838 (876)
T ss_dssp EECCSSC-CCBCCSCCCSSSCEEECCSCT
T ss_pred EECCCCC-CCccCHhhcCCCCEEECCCCC
Confidence 9999985 58898865 356666666654
No 8
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=3.2e-22 Score=241.79 Aligned_cols=354 Identities=12% Similarity=0.110 Sum_probs=254.1
Q ss_pred ccccCCCcccccccccEEEcccCCCCc------------------CCCCC-CCCCCcccEEEcccCCcCccCcHHHHccC
Q 042574 485 RLLKFPGEQEWEENLERVSLMDNHIEE------------------IPSNM-SPHCKILSTLLLQRNGYLQRIPECFFMHM 545 (929)
Q Consensus 485 ~l~~~p~~~~~~~~l~~L~l~~~~~~~------------------~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l 545 (929)
++..+|.....+++++.|++++|.+.. +|..+ |..+++|++|++++|.....+|..+ .++
T Consensus 436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L 514 (876)
T 4ecn_A 436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDL 514 (876)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGC
T ss_pred cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCC
Confidence 344478777778899999999999987 77765 3489999999999998788888665 899
Q ss_pred CCCcEEEecCCC-Ccc--cCccccccc-------ccceeecccccccccCcc---ccccCCCCEEEccCCCCcccccccc
Q 042574 546 RGLKVLNLSHTN-IEV--LPSSVSNLT-------NLRSLLLRWCRRLKRVPS---VAKLLALQYLDLERTWIEEVPEGME 612 (929)
Q Consensus 546 ~~L~~L~l~~~~-i~~--lp~~i~~l~-------~L~~L~l~~~~~~~~~~~---~~~l~~L~~L~l~~~~i~~lp~~i~ 612 (929)
++|++|++++|. ++. +|..++.+. +|++|++++|... .+|. ++++++|++|++++|.+..+| .++
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~ 592 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-AFG 592 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-hhc
Confidence 999999999998 874 888887776 9999999998655 6665 999999999999999999999 899
Q ss_pred CCCCCCEEEccCCCCccCCCCccCCCCC-ccEEEeecCCchhcccHHHHhccc-ccccEeEEEecccccc----hhcccc
Q 042574 613 MLENLSHLYLSSPPLKKFPTGILPRLRN-LYKLKLSFGNEALRETVEEAARLS-DGLDSFEGHFSELKDF----NIYVKS 686 (929)
Q Consensus 613 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~l~~l~-~~L~~L~~~~~~l~~l----~~~~~~ 686 (929)
++++|++|++++|.+..+|.. +.++++ |+.|++++|.... ....+..+. .+|+.|.+....+... ......
T Consensus 593 ~L~~L~~L~Ls~N~l~~lp~~-l~~l~~~L~~L~Ls~N~L~~--lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~ 669 (876)
T 4ecn_A 593 TNVKLTDLKLDYNQIEEIPED-FCAFTDQVEGLGFSHNKLKY--IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669 (876)
T ss_dssp TTSEESEEECCSSCCSCCCTT-SCEECTTCCEEECCSSCCCS--CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTT
T ss_pred CCCcceEEECcCCccccchHH-HhhccccCCEEECcCCCCCc--CchhhhccccCCCCEEECcCCcCCCccccchhhhcc
Confidence 999999999999999988766 788998 9999999775321 111122222 1377887766655332 111222
Q ss_pred cCCCCceeEEEEecccccccccc-cCcCCCceeEeecccccCCCCccc--------CcccccceeeecccCcccccccCc
Q 042574 687 TDGRGSKHYCLLLSAYRMGAFMI-TGLELPKSVILNNYKICRGEEPIV--------LPEDVQFLRMFEVSDVASLNDVLP 757 (929)
Q Consensus 687 ~~~~~l~~l~~~~~~~~~~~~~~-~~~~~~~~l~L~~~~~~~~~~~~~--------~~~~L~~L~i~~~~~~~~l~~~~~ 757 (929)
.....|..+.+..+.....+... ..++.++.+.+++..+........ .+++|+.|.+.++. +..++
T Consensus 670 ~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp---- 744 (876)
T 4ecn_A 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLS---- 744 (876)
T ss_dssp CCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCC----
T ss_pred ccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC-Cccch----
Confidence 23345666666555554322221 234667888888776663332221 22389999998874 22221
Q ss_pred cccCccccc--ccccceeEEEEecCCCccccchhchhhhcCCccEEEEecCcch-----hhhhccCcchhhhhhcccccc
Q 042574 758 REQGLVNIG--KFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDSI-----KEIIAVEDEETEKELATNTII 830 (929)
Q Consensus 758 ~~~~l~~l~--~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~l-----~~i~~~~~~~~~~~~~~~~~~ 830 (929)
..+. .++ +|+.|+|++| .++.+|. .+..+++|+.|++++++.+ ...++ .
T Consensus 745 -----~~l~~~~l~-~L~~L~Ls~N-~L~~lp~--~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip---------------~ 800 (876)
T 4ecn_A 745 -----DDFRATTLP-YLSNMDVSYN-CFSSFPT--QPLNSSQLKAFGIRHQRDAEGNRILRQWP---------------T 800 (876)
T ss_dssp -----GGGSTTTCT-TCCEEECCSS-CCSSCCC--GGGGCTTCCEEECCCCBCTTCCBCCCCCC---------------T
T ss_pred -----HHhhhccCC-CcCEEEeCCC-CCCccch--hhhcCCCCCEEECCCCCCcccccccccCh---------------H
Confidence 2233 677 9999999996 5566654 4668999999999885422 11110 1
Q ss_pred ccccCCCcceeecccccccccccccCccccCCCccEEEEeccCCCcccc
Q 042574 831 NTVTLPRLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCPKLKRLS 879 (929)
Q Consensus 831 ~~~~~p~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~~L~~lP 879 (929)
....+++|+.|+|++|. +..++. . .+++|+.|++++|+ +..+.
T Consensus 801 ~l~~L~~L~~L~Ls~N~-L~~Ip~--~--l~~~L~~LdLs~N~-l~~i~ 843 (876)
T 4ecn_A 801 GITTCPSLIQLQIGSND-IRKVDE--K--LTPQLYILDIADNP-NISID 843 (876)
T ss_dssp TGGGCSSCCEEECCSSC-CCBCCS--C--CCSSSCEEECCSCT-TCEEE
T ss_pred HHhcCCCCCEEECCCCC-CCccCH--h--hcCCCCEEECCCCC-CCccC
Confidence 23368999999999985 488876 3 23799999999998 44443
No 9
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=2e-22 Score=239.72 Aligned_cols=348 Identities=12% Similarity=0.120 Sum_probs=218.3
Q ss_pred CCCCCcccEEEcccCCcCcc-----------------CcHHHHc--cCCCCcEEEecCCCCc-ccCcccccccccceeec
Q 042574 517 SPHCKILSTLLLQRNGYLQR-----------------IPECFFM--HMRGLKVLNLSHTNIE-VLPSSVSNLTNLRSLLL 576 (929)
Q Consensus 517 ~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~~--~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l 576 (929)
+.++++|++|++++|..... +|..+ + ++++|++|++++|.+. .+|..++++++|++|++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 34678888888888873332 77665 5 7888888888888755 77888888888888888
Q ss_pred ccccccc--cCc-ccccc------CCCCEEEccCCCCccccc--cccCCCCCCEEEccCCCCc-cCCCCccCCCCCccEE
Q 042574 577 RWCRRLK--RVP-SVAKL------LALQYLDLERTWIEEVPE--GMEMLENLSHLYLSSPPLK-KFPTGILPRLRNLYKL 644 (929)
Q Consensus 577 ~~~~~~~--~~~-~~~~l------~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L 644 (929)
++|..+. .+| .++++ ++|++|++++|.++.+|. .++++++|++|++++|.++ .+| .++++++|++|
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L 358 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASL 358 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEE
Confidence 8886343 466 56665 888888888888888887 7888888888888888887 666 47888888888
Q ss_pred EeecCCchhcccHHHHhccccc-ccEeEEEecccccchhcccccCCCCceeEEEEecccccccc-ccc-------CcCCC
Q 042574 645 KLSFGNEALRETVEEAARLSDG-LDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRMGAF-MIT-------GLELP 715 (929)
Q Consensus 645 ~l~~~~~~~~~~~~~l~~l~~~-L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~-------~~~~~ 715 (929)
++++|... .....+..+. + |+.|.+....+..++..........++.+.+..+......+ ... ....+
T Consensus 359 ~L~~N~l~--~lp~~l~~l~-~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L 435 (636)
T 4eco_A 359 NLAYNQIT--EIPANFCGFT-EQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435 (636)
T ss_dssp ECCSSEEE--ECCTTSEEEC-TTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred ECCCCccc--cccHhhhhhc-ccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence 88866432 2223456666 6 88888876666654443332222345555554444332111 011 12245
Q ss_pred ceeEeecccccCCCCc-ccCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchhhh
Q 042574 716 KSVILNNYKICRGEEP-IVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPA 794 (929)
Q Consensus 716 ~~l~L~~~~~~~~~~~-~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~ 794 (929)
+.+.+++..+...... +..+++|+.|.+.++.-. .++..... .....+..++ +|+.|++++| .++.+|.......
T Consensus 436 ~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~-~~~~~~~~l~-~L~~L~Ls~N-~l~~lp~~~~~~~ 511 (636)
T 4eco_A 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLK-DENENFKNTY-LLTSIDLRFN-KLTKLSDDFRATT 511 (636)
T ss_dssp EEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSE-ETTEECTTGG-GCCEEECCSS-CCCBCCGGGSTTT
T ss_pred CEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhc-cccccccccC-CccEEECcCC-cCCccChhhhhcc
Confidence 5566665555433222 234677888888776432 22211000 0011123444 8889999886 5566654221137
Q ss_pred cCCccEEEEecCcchhhhhccCcchhhhhhccccccccccCCCcceeecccc------cccccccccCccccCCCccEEE
Q 042574 795 LQNLEVLKVYGCDSIKEIIAVEDEETEKELATNTIINTVTLPRLKKLRFYFL------REFKRFCSNNGVLVCNSLQEIK 868 (929)
Q Consensus 795 L~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~------~~L~~i~~~~~~~~~p~L~~L~ 868 (929)
+++|+.|++++| .++.++ .....+++|+.|+++++ .-...++. ....+++|++|+
T Consensus 512 l~~L~~L~Ls~N-~l~~ip----------------~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~--~l~~l~~L~~L~ 572 (636)
T 4eco_A 512 LPYLVGIDLSYN-SFSKFP----------------TQPLNSSTLKGFGIRNQRDAQGNRTLREWPE--GITLCPSLTQLQ 572 (636)
T ss_dssp CTTCCEEECCSS-CCSSCC----------------CGGGGCSSCCEEECCSCBCTTCCBCCCCCCT--TGGGCSSCCEEE
T ss_pred CCCcCEEECCCC-CCCCcC----------------hhhhcCCCCCEEECCCCcccccCcccccChH--HHhcCCCCCEEE
Confidence 888999999886 454443 12235788888888543 33444554 555688888888
Q ss_pred EeccCCCccccCCC-CccCCCCCCCCC
Q 042574 869 VRGCPKLKRLSLSL-PLLDNGQPSPPP 894 (929)
Q Consensus 869 I~~C~~L~~lP~~l-~~l~~~~~~~~~ 894 (929)
+++|. ++.+|..+ ++|+.++++.+|
T Consensus 573 Ls~N~-l~~ip~~~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 573 IGSND-IRKVNEKITPNISVLDIKDNP 598 (636)
T ss_dssp CCSSC-CCBCCSCCCTTCCEEECCSCT
T ss_pred CCCCc-CCccCHhHhCcCCEEECcCCC
Confidence 88886 58888754 355555555543
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=3.4e-21 Score=212.16 Aligned_cols=167 Identities=20% Similarity=0.265 Sum_probs=119.2
Q ss_pred ccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCccccccccccee
Q 042574 495 WEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSL 574 (929)
Q Consensus 495 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L 574 (929)
..+++++|+++++.+..++. +..+++|++|++++|. +..++. +.++++|++|++++|.++.+| .+..+++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~-i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQ-ITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred hcccccEEEEeCCccccchh--hhhcCCccEEEccCCc-cccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence 34578888888888777754 4568888888888886 666665 578888888888888888775 57888888888
Q ss_pred ecccccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCCchhc
Q 042574 575 LLRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGNEALR 654 (929)
Q Consensus 575 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 654 (929)
++++|. +..++.+..+++|++|++++|.....+..+..+++|++|++++|.+..++. +.++++|++|++++|.....
T Consensus 116 ~l~~n~-i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~ 192 (347)
T 4fmz_A 116 YLNEDN-ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI 192 (347)
T ss_dssp ECTTSC-CCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC
T ss_pred ECcCCc-ccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc
Confidence 888874 455566788888888888888433333447888888888888888777655 67888888888876642211
Q ss_pred ccHHHHhcccccccEeEEEe
Q 042574 655 ETVEEAARLSDGLDSFEGHF 674 (929)
Q Consensus 655 ~~~~~l~~l~~~L~~L~~~~ 674 (929)
..+..+. +|+.+.+..
T Consensus 193 ---~~~~~l~-~L~~L~l~~ 208 (347)
T 4fmz_A 193 ---SPLASLT-SLHYFTAYV 208 (347)
T ss_dssp ---GGGGGCT-TCCEEECCS
T ss_pred ---ccccCCC-ccceeeccc
Confidence 1144445 555555443
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=3.9e-21 Score=228.81 Aligned_cols=169 Identities=18% Similarity=0.129 Sum_probs=134.7
Q ss_pred EEEcCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCC
Q 042574 479 MVKAGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNI 558 (929)
Q Consensus 479 ~~~~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 558 (929)
....+..+.++|.. .++++++|++++|.+..+++..+..+++|++|++++|. +..+++..|.++++|++|++++|.+
T Consensus 17 ~~c~~~~l~~iP~~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 17 YNCENLGLNEIPGT--LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp EECTTSCCSSCCTT--SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EECCCCCcccCcCC--CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCc-cceeChhhccCccccCeeeCCCCcc
Confidence 34456677888874 45689999999999998877777899999999999997 5555555568999999999999998
Q ss_pred ccc-CcccccccccceeecccccccccCc-cccccCCCCEEEccCCCCcccc-ccccCCCCCCEEEccCCCCccCCCCcc
Q 042574 559 EVL-PSSVSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIEEVP-EGMEMLENLSHLYLSSPPLKKFPTGIL 635 (929)
Q Consensus 559 ~~l-p~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~l 635 (929)
..+ |..++++++|++|++++|......| .++++++|++|++++|.+..++ +.+..+++|++|++++|.++.+++..+
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 173 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHH
T ss_pred cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhh
Confidence 865 6788999999999999985444334 6889999999999999888763 334458999999999998888777667
Q ss_pred CCCCCcc--EEEeecCC
Q 042574 636 PRLRNLY--KLKLSFGN 650 (929)
Q Consensus 636 ~~l~~L~--~L~l~~~~ 650 (929)
+.+++|+ +|++++|.
T Consensus 174 ~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 174 SSLQQATNLSLNLNGND 190 (606)
T ss_dssp HTTTTCCSEEEECTTCC
T ss_pred hhhcccceeEEecCCCc
Confidence 7888888 66666543
No 12
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=4.1e-21 Score=220.32 Aligned_cols=336 Identities=18% Similarity=0.228 Sum_probs=186.8
Q ss_pred ccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcc
Q 042574 485 RLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSS 564 (929)
Q Consensus 485 ~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~ 564 (929)
.+..+|. ...++++++|++++|.+..++. +..+++|++|++++|. +..++. +.++++|++|++++|.++.+|.
T Consensus 57 ~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~L~~n~l~~~~~- 129 (466)
T 1o6v_A 57 GIKSIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ-IADITP--LANLTNLTGLTLFNNQITDIDP- 129 (466)
T ss_dssp CCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCCGG-
T ss_pred CCccCcc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCc-cccChh--hcCCCCCCEEECCCCCCCCChH-
Confidence 3344443 3345566667776666666554 4466667777776665 444444 4666677777777766666654
Q ss_pred cccccccceeecccccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEE
Q 042574 565 VSNLTNLRSLLLRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKL 644 (929)
Q Consensus 565 i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 644 (929)
+..+++|++|++++|. +..++.++.+++|++|++++ .+..++. +.++++|++|++++|.+..++. +.++++|++|
T Consensus 130 ~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~-~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L 204 (466)
T 1o6v_A 130 LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGN-QVTDLKP-LANLTTLERLDISSNKVSDISV--LAKLTNLESL 204 (466)
T ss_dssp GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEE-SCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEE
T ss_pred HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCC-cccCchh-hccCCCCCEEECcCCcCCCChh--hccCCCCCEE
Confidence 6666677777776653 44455666666777776653 3344432 6667777777777777666543 5677777777
Q ss_pred EeecCCchhcccHHHHhcccccccEeEEEecccccchhcccccCCCCceeEEEEecccccccccccCcCCCceeEeeccc
Q 042574 645 KLSFGNEALRETVEEAARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMITGLELPKSVILNNYK 724 (929)
Q Consensus 645 ~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~L~~~~ 724 (929)
++++|...... .+..+. +|+.|.+....+..+... .....|+.+.+..+....... ...++.++.+.++++.
T Consensus 205 ~l~~n~l~~~~---~~~~l~-~L~~L~l~~n~l~~~~~l---~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~ 276 (466)
T 1o6v_A 205 IATNNQISDIT---PLGILT-NLDELSLNGNQLKDIGTL---ASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQ 276 (466)
T ss_dssp ECCSSCCCCCG---GGGGCT-TCCEEECCSSCCCCCGGG---GGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC
T ss_pred EecCCcccccc---cccccC-CCCEEECCCCCcccchhh---hcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCc
Confidence 77755422211 144455 677776665554443211 122344444444333322221 2223445555555544
Q ss_pred ccCCCCcccCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchhhhcCCccEEEEe
Q 042574 725 ICRGEEPIVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVY 804 (929)
Q Consensus 725 ~~~~~~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~ 804 (929)
+..... +..+++|+.|.+.++.- . .+..++.++ +|+.|++++| .++.+++ +..+++|+.|+++
T Consensus 277 l~~~~~-~~~l~~L~~L~L~~n~l-~----------~~~~~~~l~-~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 277 ISNISP-LAGLTALTNLELNENQL-E----------DISPISNLK-NLTYLTLYFN-NISDISP---VSSLTKLQRLFFY 339 (466)
T ss_dssp CCCCGG-GTTCTTCSEEECCSSCC-S----------CCGGGGGCT-TCSEEECCSS-CCSCCGG---GGGCTTCCEEECC
T ss_pred cCcccc-ccCCCccCeEEcCCCcc-c----------CchhhcCCC-CCCEEECcCC-cCCCchh---hccCccCCEeECC
Confidence 433222 44455666666655431 1 122244555 7777777775 3444443 3456677777777
Q ss_pred cCcchhhhhccCcchhhhhhccccccccccCCCcceeecccccccccccccCccccCCCccEEEEeccCCCccccC
Q 042574 805 GCDSIKEIIAVEDEETEKELATNTIINTVTLPRLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCPKLKRLSL 880 (929)
Q Consensus 805 ~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~~L~~lP~ 880 (929)
+| .++.+. ....+++|+.|++++|+ +..+.. ...+++|+.|++.+|+ +..+|.
T Consensus 340 ~n-~l~~~~-----------------~l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-~~~~p~ 392 (466)
T 1o6v_A 340 NN-KVSDVS-----------------SLANLTNINWLSAGHNQ-ISDLTP---LANLTRITQLGLNDQA-WTNAPV 392 (466)
T ss_dssp SS-CCCCCG-----------------GGTTCTTCCEEECCSSC-CCBCGG---GTTCTTCCEEECCCEE-EECCCB
T ss_pred CC-ccCCch-----------------hhccCCCCCEEeCCCCc-cCccch---hhcCCCCCEEeccCCc-ccCCch
Confidence 65 333331 12257778888887764 444432 4567788888888774 444443
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.87 E-value=5.2e-21 Score=223.15 Aligned_cols=376 Identities=16% Similarity=0.120 Sum_probs=215.2
Q ss_pred EcCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcc
Q 042574 481 KAGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEV 560 (929)
Q Consensus 481 ~~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 560 (929)
..+.+++.+|... .+++++|++++|.+..+++..+..+++|++|++++|. +..+++..|.++++|++|++++|.++.
T Consensus 7 ls~n~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 83 (520)
T 2z7x_B 7 RSKNGLIHVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNKLVK 83 (520)
T ss_dssp CTTSCCSSCCCSC--CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSCCCE
T ss_pred cCCCCcccccccc--cccccEEECCCCcccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCceee
Confidence 3455677788653 3789999999999988876666789999999999997 666655556899999999999999999
Q ss_pred cCcccccccccceeecccccccc-cCc-cccccCCCCEEEccCCCCccccccccCCCCC--CEEEccCCCC--ccCCCCc
Q 042574 561 LPSSVSNLTNLRSLLLRWCRRLK-RVP-SVAKLLALQYLDLERTWIEEVPEGMEMLENL--SHLYLSSPPL--KKFPTGI 634 (929)
Q Consensus 561 lp~~i~~l~~L~~L~l~~~~~~~-~~~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L--~~L~l~~~~~--~~~~~~~ 634 (929)
+|.. .+++|++|++++|.... .+| .++++++|++|++++|.+.. ..+..+++| ++|++++|.+ ....+..
T Consensus 84 lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~ 159 (520)
T 2z7x_B 84 ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG 159 (520)
T ss_dssp EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT
T ss_pred cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc
Confidence 9876 89999999999986554 355 79999999999999998876 346777788 9999988877 3332222
Q ss_pred c--------------------------CCCCCccEEEeecCCc-----hhcccHHHHhcccccccEeEEEecccccchh-
Q 042574 635 L--------------------------PRLRNLYKLKLSFGNE-----ALRETVEEAARLSDGLDSFEGHFSELKDFNI- 682 (929)
Q Consensus 635 l--------------------------~~l~~L~~L~l~~~~~-----~~~~~~~~l~~l~~~L~~L~~~~~~l~~l~~- 682 (929)
+ .++++|+.|+++.|.. .....+..+..+. +|+.|.+....+.....
T Consensus 160 l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~l~~~~~~ 238 (520)
T 2z7x_B 160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNP-KLSNLTLNNIETTWNSFI 238 (520)
T ss_dssp TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCT-TCCEEEEEEEEEEHHHHH
T ss_pred ccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhcccc-chhhccccccccCHHHHH
Confidence 3 3466777777776530 0111122344455 55555554322211000
Q ss_pred -cccccCCCCceeEEEEecccc-cccccc-----cCc--------------------------CCCceeEeecccccCCC
Q 042574 683 -YVKSTDGRGSKHYCLLLSAYR-MGAFMI-----TGL--------------------------ELPKSVILNNYKICRGE 729 (929)
Q Consensus 683 -~~~~~~~~~l~~l~~~~~~~~-~~~~~~-----~~~--------------------------~~~~~l~L~~~~~~~~~ 729 (929)
.........++.+.+..+... ..+... ..+ ..++.+.++++.+....
T Consensus 239 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~ 318 (520)
T 2z7x_B 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318 (520)
T ss_dssp HHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC
T ss_pred HHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc
Confidence 000000012222222211111 000000 000 11334444433322211
Q ss_pred CcccCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchh-chhhhcCCccEEEEecCcc
Q 042574 730 EPIVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSL-WLLPALQNLEVLKVYGCDS 808 (929)
Q Consensus 730 ~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~-~~l~~L~~L~~L~i~~c~~ 808 (929)
. ...+++|+.|.+.++.-.... +..++.++ +|+.|++++| .++.++.. ..+..+++|++|++++|.
T Consensus 319 ~-~~~l~~L~~L~Ls~n~l~~~~---------~~~~~~l~-~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~- 385 (520)
T 2z7x_B 319 C-PSKISPFLHLDFSNNLLTDTV---------FENCGHLT-ELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNS- 385 (520)
T ss_dssp C-CSSCCCCCEEECCSSCCCTTT---------TTTCCCCS-SCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSC-
T ss_pred c-hhhCCcccEEEeECCccChhh---------hhhhccCC-CCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCc-
Confidence 0 134566666666665422111 22234455 6666666664 33332221 124455666666666543
Q ss_pred hhh-hhccCcch-hh-----hhhccccccccccC-CCcceeecccccccccccccCccccCCCccEEEEeccCCCccccC
Q 042574 809 IKE-IIAVEDEE-TE-----KELATNTIINTVTL-PRLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCPKLKRLSL 880 (929)
Q Consensus 809 l~~-i~~~~~~~-~~-----~~~~~~~~~~~~~~-p~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~~L~~lP~ 880 (929)
++. ++...-.. .. -..+.........+ ++|+.|++++| +++.++. ....+++|++|++++| +++.+|.
T Consensus 386 l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~--~~~~l~~L~~L~L~~N-~l~~l~~ 461 (520)
T 2z7x_B 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPK--QVVKLEALQELNVASN-QLKSVPD 461 (520)
T ss_dssp CBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCG--GGGGCTTCCEEECCSS-CCCCCCT
T ss_pred CCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccch--hhhcCCCCCEEECCCC-cCCccCH
Confidence 222 22110000 00 00000000011123 68888998886 5777776 4557899999999998 5888887
Q ss_pred C
Q 042574 881 S 881 (929)
Q Consensus 881 ~ 881 (929)
.
T Consensus 462 ~ 462 (520)
T 2z7x_B 462 G 462 (520)
T ss_dssp T
T ss_pred H
Confidence 5
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=9.9e-21 Score=217.09 Aligned_cols=325 Identities=17% Similarity=0.215 Sum_probs=247.7
Q ss_pred cccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceee
Q 042574 496 EENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLL 575 (929)
Q Consensus 496 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~ 575 (929)
.++++.|++.++.+..++. +..+++|++|++++|. +..++. +.++++|++|++++|.+..++. ++.+++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQ-LTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred hccccEEecCCCCCccCcc--hhhhcCCCEEECCCCc-cCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEE
Confidence 4689999999999988874 4579999999999997 677776 5899999999999999998876 99999999999
Q ss_pred cccccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCCchhcc
Q 042574 576 LRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGNEALRE 655 (929)
Q Consensus 576 l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 655 (929)
+++| .+..++.+.++++|++|++++|.+..+| .+.++++|++|++. +.+..+++ +.++++|++|++++|....
T Consensus 119 L~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~-- 191 (466)
T 1o6v_A 119 LFNN-QITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSD-- 191 (466)
T ss_dssp CCSS-CCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSCCCC--
T ss_pred CCCC-CCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCcCCC--
Confidence 9998 4566677999999999999999999887 48999999999996 45555544 7899999999999775322
Q ss_pred cHHHHhcccccccEeEEEecccccchhcccccCCCCceeEEEEecccccccccccCcCCCceeEeecccccCCCCcccCc
Q 042574 656 TVEEAARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMITGLELPKSVILNNYKICRGEEPIVLP 735 (929)
Q Consensus 656 ~~~~l~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~L~~~~~~~~~~~~~~~ 735 (929)
+..+..+. +|+.|.+....+..... ......|+.+.+..+...... ....++.++.+.++++.+.... ++..+
T Consensus 192 -~~~l~~l~-~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~-~~~~l 264 (466)
T 1o6v_A 192 -ISVLAKLT-NLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLA-PLSGL 264 (466)
T ss_dssp -CGGGGGCT-TCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG-GGTTC
T ss_pred -ChhhccCC-CCCEEEecCCccccccc---ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccch-hhhcC
Confidence 23466777 99999987766655433 122346676666555443322 2333566788888877665543 36678
Q ss_pred ccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchhhhcCCccEEEEecCcchhhhhcc
Q 042574 736 EDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDSIKEIIAV 815 (929)
Q Consensus 736 ~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~l~~i~~~ 815 (929)
++|+.|.+.++.-.. ++.+..++ +|+.|++++| .++.+++ +..+++|+.|++++| .++.+..
T Consensus 265 ~~L~~L~l~~n~l~~-----------~~~~~~l~-~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~- 326 (466)
T 1o6v_A 265 TKLTELKLGANQISN-----------ISPLAGLT-ALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFN-NISDISP- 326 (466)
T ss_dssp TTCSEEECCSSCCCC-----------CGGGTTCT-TCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSS-CCSCCGG-
T ss_pred CCCCEEECCCCccCc-----------cccccCCC-ccCeEEcCCC-cccCchh---hcCCCCCCEEECcCC-cCCCchh-
Confidence 899999998874221 22356677 9999999996 5666655 567889999999998 3444431
Q ss_pred CcchhhhhhccccccccccCCCcceeecccccccccccccCccccCCCccEEEEeccCCCcccc
Q 042574 816 EDEETEKELATNTIINTVTLPRLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCPKLKRLS 879 (929)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~~L~~lP 879 (929)
...+++|+.|++++| .+..++ ....+++|+.|++++|+ +..++
T Consensus 327 ----------------~~~l~~L~~L~l~~n-~l~~~~---~l~~l~~L~~L~l~~n~-l~~~~ 369 (466)
T 1o6v_A 327 ----------------VSSLTKLQRLFFYNN-KVSDVS---SLANLTNINWLSAGHNQ-ISDLT 369 (466)
T ss_dssp ----------------GGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSC-CCBCG
T ss_pred ----------------hccCccCCEeECCCC-ccCCch---hhccCCCCCEEeCCCCc-cCccc
Confidence 226899999999998 566663 46678999999999996 55544
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=9.3e-21 Score=225.52 Aligned_cols=146 Identities=21% Similarity=0.233 Sum_probs=97.5
Q ss_pred ccccCCC-cccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccC-
Q 042574 485 RLLKFPG-EQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLP- 562 (929)
Q Consensus 485 ~l~~~p~-~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp- 562 (929)
.+..++. .....+++++|++++|.+..+++..+.++++|++|++++|. +..+++..|+++++|++|++++|.++.+|
T Consensus 43 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~ 121 (606)
T 3vq2_A 43 PLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETKLASLES 121 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTSCCCCSSS
T ss_pred CcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCCccccccc
Confidence 3334433 33455678888888888887766666778888888888886 55554444578888888888888887665
Q ss_pred cccccccccceeecccccccc-cCc-cccccCCCCEEEccCCCCccccc-cccCCCCCC----EEEccCCCCccCC
Q 042574 563 SSVSNLTNLRSLLLRWCRRLK-RVP-SVAKLLALQYLDLERTWIEEVPE-GMEMLENLS----HLYLSSPPLKKFP 631 (929)
Q Consensus 563 ~~i~~l~~L~~L~l~~~~~~~-~~~-~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~----~L~l~~~~~~~~~ 631 (929)
..++++++|++|++++|.... .+| .++++++|++|++++|.++.++. .+..+++|+ +|++++|.++.++
T Consensus 122 ~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~ 197 (606)
T 3vq2_A 122 FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQ 197 (606)
T ss_dssp SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEEC
T ss_pred cccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeC
Confidence 567888888888888875443 445 58888888888888887775543 244433332 4555554444333
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=1.1e-20 Score=222.04 Aligned_cols=390 Identities=16% Similarity=0.131 Sum_probs=243.0
Q ss_pred cCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCccc
Q 042574 482 AGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVL 561 (929)
Q Consensus 482 ~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l 561 (929)
.+..++++|... .+++++|++++|.+..+++..+..+++|++|++++|. +..+++..|.++++|++|++++|.++.+
T Consensus 13 ~~~~l~~ip~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 89 (549)
T 2z81_A 13 RSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNHLSSL 89 (549)
T ss_dssp TTSCCSSCCSCC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred CCCccccccccC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCCccCcc
Confidence 455678888753 4789999999999998877777899999999999997 6666665568999999999999999988
Q ss_pred Ccc-cccccccceeecccccccc-cCc-cccccCCCCEEEccCCC-Cccccc-cccCCCCCCEEEccCCCCccCCCCccC
Q 042574 562 PSS-VSNLTNLRSLLLRWCRRLK-RVP-SVAKLLALQYLDLERTW-IEEVPE-GMEMLENLSHLYLSSPPLKKFPTGILP 636 (929)
Q Consensus 562 p~~-i~~l~~L~~L~l~~~~~~~-~~~-~~~~l~~L~~L~l~~~~-i~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~l~ 636 (929)
|.. ++++++|++|++++|.... ..| .++++++|++|++++|. +..+|. .+.++++|++|++++|.++...+..++
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 765 8999999999999986543 334 69999999999999996 778874 699999999999999999887667789
Q ss_pred CCCCccEEEeecCCchhcccHHHHhcccccccEeEEEecccccchhcc--cccCCCCceeEEEEeccccccc-----ccc
Q 042574 637 RLRNLYKLKLSFGNEALRETVEEAARLSDGLDSFEGHFSELKDFNIYV--KSTDGRGSKHYCLLLSAYRMGA-----FMI 709 (929)
Q Consensus 637 ~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~~l~~l~~~~--~~~~~~~l~~l~~~~~~~~~~~-----~~~ 709 (929)
++++|++|+++.+.... ........+. +|+.|.+....+....... .......++.+.+..+...... ...
T Consensus 170 ~l~~L~~L~l~~n~~~~-~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~ 247 (549)
T 2z81_A 170 SIRDIHHLTLHLSESAF-LLEIFADILS-SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247 (549)
T ss_dssp TCSEEEEEEEECSBSTT-HHHHHHHSTT-TBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGG
T ss_pred ccccCceEecccCcccc-cchhhHhhcc-cccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHh
Confidence 99999999999765321 1112234567 8999998876655432110 0112234555555443322110 011
Q ss_pred cCcCCCceeEeecccccCCC-------CcccCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCC
Q 042574 710 TGLELPKSVILNNYKICRGE-------EPIVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHN 782 (929)
Q Consensus 710 ~~~~~~~~l~L~~~~~~~~~-------~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~ 782 (929)
.....+..+.+.++.+.+.. ..+..+++|+.|.+.++....... +..+..+..+.++|+.|.+++| .
T Consensus 248 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-----~~~l~~~~~~~~~L~~L~l~~n-~ 321 (549)
T 2z81_A 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL-----FYDLSTVYSLLEKVKRITVENS-K 321 (549)
T ss_dssp GGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG-----SCCCCHHHHHSTTCCEEEEESS-C
T ss_pred hhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhh-----cccchhhhhhcccceEEEeccC-c
Confidence 12234555666655544321 122345566666665543211100 0001110011114444444443 2
Q ss_pred ccccch--------------------------hchhhhcCCccEEEEecCcchhhhhccCcchhhhhhccccccccccCC
Q 042574 783 LKNLFS--------------------------LWLLPALQNLEVLKVYGCDSIKEIIAVEDEETEKELATNTIINTVTLP 836 (929)
Q Consensus 783 l~~l~~--------------------------~~~l~~L~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p 836 (929)
++.+|. ...+..+++|++|++++| .++.+...+ .....++
T Consensus 322 l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-------------~~~~~l~ 387 (549)
T 2z81_A 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTG-------------EILLTLK 387 (549)
T ss_dssp CCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHH-------------HHGGGCT
T ss_pred cccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccch-------------hhhhcCC
Confidence 333322 011233444555555443 222221000 0123577
Q ss_pred CcceeecccccccccccccCccccCCCccEEEEeccCCCccccCCCC-ccCCCC---------CCCCCCcceEe
Q 042574 837 RLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCPKLKRLSLSLP-LLDNGQ---------PSPPPALEVIE 900 (929)
Q Consensus 837 ~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~~L~~lP~~l~-~l~~~~---------~~~~~~L~~i~ 900 (929)
+|+.|++++| +++.++. ....+++|++|++++|. ++.+|..++ +++.++ +..+++|+.+.
T Consensus 388 ~L~~L~Ls~N-~l~~lp~--~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~ 457 (549)
T 2z81_A 388 NLTSLDISRN-TFHPMPD--SCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELY 457 (549)
T ss_dssp TCCEEECTTC-CCCCCCS--CCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEE
T ss_pred CCCEEECCCC-CCccCCh--hhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCChhcEEE
Confidence 8888888876 5666665 45566788888888875 776665443 333322 22466777764
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=3.2e-21 Score=216.00 Aligned_cols=289 Identities=15% Similarity=0.175 Sum_probs=160.2
Q ss_pred CCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCc-ccccccccceeecccccccccCc-cccccCCCCEE
Q 042574 520 CKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPS-SVSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYL 597 (929)
Q Consensus 520 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L 597 (929)
++++++|++++|. +..+|..+|..+++|++|++++|.++.+|. .+..+++|++|++++|......| .++++++|++|
T Consensus 44 l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 4555566665554 555555555556666666666665554432 45556666666666554333333 35556666666
Q ss_pred EccCCCCcccccc-ccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCCchhcccHHHHhcccccccEeEEEecc
Q 042574 598 DLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDGLDSFEGHFSE 676 (929)
Q Consensus 598 ~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~~ 676 (929)
++++|.++.+|.. +.++++|++|++++|.+..+++..+.++++|++|++++|..... .+..+. +|+.+.+....
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~-~L~~L~l~~n~ 197 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIP-SLFHANVSYNL 197 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC----CGGGCT-TCSEEECCSSC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc----cccccc-ccceeeccccc
Confidence 6666655555554 35556666666666655555555555566666666654431111 122333 44444443322
Q ss_pred cccchhcccccCCCCceeEEEEecccccccccccCcCCCceeEeecccccCCCCcccCcccccceeeecccCcccccccC
Q 042574 677 LKDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMITGLELPKSVILNNYKICRGEEPIVLPEDVQFLRMFEVSDVASLNDVL 756 (929)
Q Consensus 677 l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~L~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~l~~~~ 756 (929)
+..+.. ...++.+.+.+..+... +...+++|+.|.+.++.-..
T Consensus 198 l~~~~~-----------------------------~~~L~~L~l~~n~l~~~--~~~~~~~L~~L~l~~n~l~~------ 240 (390)
T 3o6n_A 198 LSTLAI-----------------------------PIAVEELDASHNSINVV--RGPVNVELTILKLQHNNLTD------ 240 (390)
T ss_dssp CSEEEC-----------------------------CSSCSEEECCSSCCCEE--ECCCCSSCCEEECCSSCCCC------
T ss_pred ccccCC-----------------------------CCcceEEECCCCeeeec--cccccccccEEECCCCCCcc------
Confidence 221100 01122222222221111 11234577888777764211
Q ss_pred ccccCcccccccccceeEEEEecCCCccccchhchhhhcCCccEEEEecCcchhhhhccCcchhhhhhccccccccccCC
Q 042574 757 PREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDSIKEIIAVEDEETEKELATNTIINTVTLP 836 (929)
Q Consensus 757 ~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p 836 (929)
.+.+..++ +|+.|+++++ .++.+++ ..+..+++|++|++++| .++.++. ....+|
T Consensus 241 -----~~~l~~l~-~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~----------------~~~~l~ 295 (390)
T 3o6n_A 241 -----TAWLLNYP-GLVEVDLSYN-ELEKIMY-HPFVKMQRLERLYISNN-RLVALNL----------------YGQPIP 295 (390)
T ss_dssp -----CGGGGGCT-TCSEEECCSS-CCCEEES-GGGTTCSSCCEEECCSS-CCCEEEC----------------SSSCCT
T ss_pred -----cHHHcCCC-CccEEECCCC-cCCCcCh-hHccccccCCEEECCCC-cCcccCc----------------ccCCCC
Confidence 23456677 8999999886 4555433 34667888999999886 4544421 123588
Q ss_pred CcceeecccccccccccccCccccCCCccEEEEeccCCCccccC
Q 042574 837 RLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCPKLKRLSL 880 (929)
Q Consensus 837 ~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~~L~~lP~ 880 (929)
+|+.|+++++ .+..++. ....+++|++|++++|+ ++.+|.
T Consensus 296 ~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~N~-i~~~~~ 335 (390)
T 3o6n_A 296 TLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS-IVTLKL 335 (390)
T ss_dssp TCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC-CCCCCC
T ss_pred CCCEEECCCC-cceecCc--cccccCcCCEEECCCCc-cceeCc
Confidence 9999999887 5667765 45567899999999886 676653
No 18
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=8.3e-21 Score=217.51 Aligned_cols=357 Identities=17% Similarity=0.139 Sum_probs=225.1
Q ss_pred EEEcCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCC
Q 042574 479 MVKAGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNI 558 (929)
Q Consensus 479 ~~~~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 558 (929)
....+.++..+|. .++++++|++++|.+..+++..+..+++|++|++++|.....++...|.++++|++|++++|.+
T Consensus 15 ~~c~~~~l~~lp~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 15 AICINRGLHQVPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp EECCSSCCSSCCC---CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred cCcCCCCcccCCC---CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 3445567778886 4578999999999999887777789999999999999855577776678999999999999999
Q ss_pred ccc-CcccccccccceeecccccccccCc-c--ccccCCCCEEEccCCCCccc-ccc-ccCCCCCCEEEccCCCCccCCC
Q 042574 559 EVL-PSSVSNLTNLRSLLLRWCRRLKRVP-S--VAKLLALQYLDLERTWIEEV-PEG-MEMLENLSHLYLSSPPLKKFPT 632 (929)
Q Consensus 559 ~~l-p~~i~~l~~L~~L~l~~~~~~~~~~-~--~~~l~~L~~L~l~~~~i~~l-p~~-i~~l~~L~~L~l~~~~~~~~~~ 632 (929)
+.+ |..++++++|++|++++|......+ . +.++++|++|++++|.+..+ |.. +.++++|++|++++|.+...++
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 171 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE 171 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence 866 7889999999999999986554444 3 89999999999999999977 544 8899999999999999988877
Q ss_pred CccCCC--CCccEEEeecCCchhccc----HHH---HhcccccccEeEEEecccccchh--cccccCCCCceeEEEEecc
Q 042574 633 GILPRL--RNLYKLKLSFGNEALRET----VEE---AARLSDGLDSFEGHFSELKDFNI--YVKSTDGRGSKHYCLLLSA 701 (929)
Q Consensus 633 ~~l~~l--~~L~~L~l~~~~~~~~~~----~~~---l~~l~~~L~~L~~~~~~l~~l~~--~~~~~~~~~l~~l~~~~~~ 701 (929)
..+.++ .+|+.|+++.+....... ... +..+. +|+.|++....+..... .........+..+.+..+.
T Consensus 172 ~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 250 (455)
T 3v47_A 172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT-SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSY 250 (455)
T ss_dssp TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTC-EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCT
T ss_pred hhhhccccccccccccccCcccccchhhccccccccccccc-eeeeEecCCCcccccchhhhhccccccceeeEeecccc
Confidence 666665 577788777554221110 011 11234 56666665544332111 1111112233333222111
Q ss_pred cccccccccCcCCCceeEeecccccCCCCcccCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCC
Q 042574 702 YRMGAFMITGLELPKSVILNNYKICRGEEPIVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCH 781 (929)
Q Consensus 702 ~~~~~~~~~~~~~~~~l~L~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~ 781 (929)
.............. ..........++|+.|.+.++.-.... ...++.++ +|+.|++++|
T Consensus 251 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~L~~L~l~~n~l~~~~---------~~~~~~l~-~L~~L~Ls~n- 309 (455)
T 3v47_A 251 NMGSSFGHTNFKDP----------DNFTFKGLEASGVKTCDLSKSKIFALL---------KSVFSHFT-DLEQLTLAQN- 309 (455)
T ss_dssp TTSCCTTCCSSCCC----------CTTTTGGGTTSCCCEEECCSSCCCEEC---------TTTTTTCT-TCCEEECTTS-
T ss_pred ccccccchhhhccC----------cccccccccccCceEEEecCccccccc---------hhhcccCC-CCCEEECCCC-
Confidence 10000000000000 000001112356777777666432211 12234566 7888888775
Q ss_pred CccccchhchhhhcCCccEEEEecCcchhhhhccCcchhhhhhccccccccccCCCcceeecccccccccccccCccccC
Q 042574 782 NLKNLFSLWLLPALQNLEVLKVYGCDSIKEIIAVEDEETEKELATNTIINTVTLPRLKKLRFYFLREFKRFCSNNGVLVC 861 (929)
Q Consensus 782 ~l~~l~~~~~l~~L~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~~~ 861 (929)
.++.+++ ..+..+++|++|++++| .++.+.. .....+++|+.|+++++. +..+.. .....+
T Consensus 310 ~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~---------------~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l 370 (455)
T 3v47_A 310 EINKIDD-NAFWGLTHLLKLNLSQN-FLGSIDS---------------RMFENLDKLEVLDLSYNH-IRALGD-QSFLGL 370 (455)
T ss_dssp CCCEECT-TTTTTCTTCCEEECCSS-CCCEECG---------------GGGTTCTTCCEEECCSSC-CCEECT-TTTTTC
T ss_pred cccccCh-hHhcCcccCCEEECCCC-ccCCcCh---------------hHhcCcccCCEEECCCCc-ccccCh-hhcccc
Confidence 3444433 23556778888888776 3333321 112247788888887763 444422 144567
Q ss_pred CCccEEEEeccCCCccccC
Q 042574 862 NSLQEIKVRGCPKLKRLSL 880 (929)
Q Consensus 862 p~L~~L~I~~C~~L~~lP~ 880 (929)
++|++|++++| +++.+|.
T Consensus 371 ~~L~~L~L~~N-~l~~~~~ 388 (455)
T 3v47_A 371 PNLKELALDTN-QLKSVPD 388 (455)
T ss_dssp TTCCEEECCSS-CCSCCCT
T ss_pred ccccEEECCCC-ccccCCH
Confidence 78888888876 4777765
No 19
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=1.1e-20 Score=217.70 Aligned_cols=165 Identities=20% Similarity=0.254 Sum_probs=95.9
Q ss_pred cCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCccc
Q 042574 482 AGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVL 561 (929)
Q Consensus 482 ~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l 561 (929)
.+.++..+|.. .+.+++.|++++|.+..++...+..+++|++|++++|. +..+++..|.++++|++|+|++|.++.+
T Consensus 19 ~~~~l~~ip~~--~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 95 (477)
T 2id5_A 19 HRKRFVAVPEG--IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGLRSNRLKLI 95 (477)
T ss_dssp CSCCCSSCCSC--CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred CCCCcCcCCCC--CCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEECCCCcCCcc
Confidence 34455555543 24556666666666666655555566666666666664 4444333345666666666666666655
Q ss_pred Ccc-cccccccceeecccccccccCc-cccccCCCCEEEccCCCCccccc-cccCCCCCCEEEccCCCCccCCCCccCCC
Q 042574 562 PSS-VSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIEEVPE-GMEMLENLSHLYLSSPPLKKFPTGILPRL 638 (929)
Q Consensus 562 p~~-i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~l~~l 638 (929)
|.. +.++++|++|++++|......| .+.++++|++|++++|.+..++. .+.++++|++|++++|.++.++...+.++
T Consensus 96 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 175 (477)
T 2id5_A 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL 175 (477)
T ss_dssp CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC
T ss_pred CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhccc
Confidence 543 4566666666666654433334 45666666666666666654432 35666666666666666666655555666
Q ss_pred CCccEEEeecC
Q 042574 639 RNLYKLKLSFG 649 (929)
Q Consensus 639 ~~L~~L~l~~~ 649 (929)
++|+.|+++.|
T Consensus 176 ~~L~~L~l~~n 186 (477)
T 2id5_A 176 HGLIVLRLRHL 186 (477)
T ss_dssp TTCCEEEEESC
T ss_pred CCCcEEeCCCC
Confidence 66666666544
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.86 E-value=6.7e-21 Score=232.13 Aligned_cols=352 Identities=17% Similarity=0.095 Sum_probs=158.1
Q ss_pred ccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCc-ccCcccccccccceee
Q 042574 497 ENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIE-VLPSSVSNLTNLRSLL 575 (929)
Q Consensus 497 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~ 575 (929)
+++++|++++|.+....+. +..+++|++|++++|.....+|.. +.++++|++|++++|.+. .+|.. .+++|++|+
T Consensus 200 ~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~ 275 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLS 275 (768)
T ss_dssp TTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEE
T ss_pred CcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCCCcccCccCcc--ccCCCCEEE
Confidence 3455555555544432222 334455555555555422223332 244555555555555444 22221 444555555
Q ss_pred cccccccccCc-ccccc-CCCCEEEccCCCCc-cccccccCCCCCCEEEccCCCCc-cCCCCccCCCCCccEEEeecCCc
Q 042574 576 LRWCRRLKRVP-SVAKL-LALQYLDLERTWIE-EVPEGMEMLENLSHLYLSSPPLK-KFPTGILPRLRNLYKLKLSFGNE 651 (929)
Q Consensus 576 l~~~~~~~~~~-~~~~l-~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~ 651 (929)
+++|.....+| .+..+ ++|++|++++|.+. .+|..++++++|++|++++|.+. .+|...+.++++|++|++++|..
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 55544333444 23332 55555555555444 33444555555555555555444 33333344555555555544321
Q ss_pred hhcccHHHHhcccccccEeEEEecccccc-hhcccccCCCCceeEEEEecccc-cccccccCcCCCceeEeecccccCCC
Q 042574 652 ALRETVEEAARLSDGLDSFEGHFSELKDF-NIYVKSTDGRGSKHYCLLLSAYR-MGAFMITGLELPKSVILNNYKICRGE 729 (929)
Q Consensus 652 ~~~~~~~~l~~l~~~L~~L~~~~~~l~~l-~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~l~L~~~~~~~~~ 729 (929)
. ......+..+..+|+.|.+....+... ...........++.+.+..+... ..+.....+..++.+.+..+.+.+..
T Consensus 356 ~-~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~ 434 (768)
T 3rgz_A 356 S-GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434 (768)
T ss_dssp E-ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred C-ccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc
Confidence 1 011111222211344444433222110 00000000123333333332222 11111222334455555554444322
Q ss_pred -CcccCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchhhhcCCccEEEEecCcc
Q 042574 730 -EPIVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDS 808 (929)
Q Consensus 730 -~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~ 808 (929)
..+..+++|+.|.+.++.-...+ ...+..++ +|+.|++++|.-...+|. .+..+++|++|++++|.-
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~~---------p~~~~~l~-~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~L~~N~l 502 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGEI---------PQELMYVK-TLETLILDFNDLTGEIPS--GLSNCTNLNWISLSNNRL 502 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCC---------CGGGGGCT-TCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCC
T ss_pred cHHHhcCCCCCEEECCCCcccCcC---------CHHHcCCC-CceEEEecCCcccCcCCH--HHhcCCCCCEEEccCCcc
Confidence 23444555555555555322111 22234455 777777777543333332 355667777777777632
Q ss_pred hhhhhccCcchhhhhhccccccccccCCCcceeecccccccccccccCccccCCCccEEEEeccCCCccccCCCC
Q 042574 809 IKEIIAVEDEETEKELATNTIINTVTLPRLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCPKLKRLSLSLP 883 (929)
Q Consensus 809 l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~~L~~lP~~l~ 883 (929)
...++ .....+++|+.|++++|.-...++. ....+++|+.|++++|+--..+|..+.
T Consensus 503 ~~~~p----------------~~~~~l~~L~~L~L~~N~l~~~~p~--~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 503 TGEIP----------------KWIGRLENLAILKLSNNSFSGNIPA--ELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp CSCCC----------------GGGGGCTTCCEEECCSSCCEEECCG--GGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred CCcCC----------------hHHhcCCCCCEEECCCCcccCcCCH--HHcCCCCCCEEECCCCccCCcCChHHh
Confidence 11221 1122477788888877765545554 555677788888887765556776443
No 21
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.86 E-value=2.6e-20 Score=205.07 Aligned_cols=292 Identities=18% Similarity=0.255 Sum_probs=212.0
Q ss_pred CcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccC
Q 042574 483 GLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLP 562 (929)
Q Consensus 483 ~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp 562 (929)
+..+..++. ....+++++|++++|.+..++. +..+++|++|++++|. +..++. +.++++|++|++++|.+..+|
T Consensus 53 ~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~-i~~~~~--~~~l~~L~~L~l~~n~i~~~~ 126 (347)
T 4fmz_A 53 GEKVASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK-ITDISA--LQNLTNLRELYLNEDNISDIS 126 (347)
T ss_dssp SSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCCGG--GTTCTTCSEEECTTSCCCCCG
T ss_pred CCccccchh-hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCc-ccCchH--HcCCCcCCEEECcCCcccCch
Confidence 344455654 4567899999999999998876 5689999999999996 666664 589999999999999999887
Q ss_pred cccccccccceeecccccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCcc
Q 042574 563 SSVSNLTNLRSLLLRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLY 642 (929)
Q Consensus 563 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 642 (929)
. +..+++|++|++++|.....++.+..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +..+++|+
T Consensus 127 ~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 202 (347)
T 4fmz_A 127 P-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLH 202 (347)
T ss_dssp G-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCC
T ss_pred h-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc--ccCCCccc
Confidence 6 899999999999999888888889999999999999999998876 8899999999999999988766 78999999
Q ss_pred EEEeecCCchhcccHHHHhcccccccEeEEEecccccchhcccccCCCCceeEEEEecccccccccccCcCCCceeEeec
Q 042574 643 KLKLSFGNEALRETVEEAARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMITGLELPKSVILNN 722 (929)
Q Consensus 643 ~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~L~~ 722 (929)
.|+++++....... +..+. +|+.|.+....+....
T Consensus 203 ~L~l~~n~l~~~~~---~~~~~-~L~~L~l~~n~l~~~~----------------------------------------- 237 (347)
T 4fmz_A 203 YFTAYVNQITDITP---VANMT-RLNSLKIGNNKITDLS----------------------------------------- 237 (347)
T ss_dssp EEECCSSCCCCCGG---GGGCT-TCCEEECCSSCCCCCG-----------------------------------------
T ss_pred eeecccCCCCCCch---hhcCC-cCCEEEccCCccCCCc-----------------------------------------
Confidence 99999765322211 45555 6776666544332211
Q ss_pred ccccCCCCcccCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchhhhcCCccEEE
Q 042574 723 YKICRGEEPIVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLK 802 (929)
Q Consensus 723 ~~~~~~~~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~ 802 (929)
.+..+++|+.|.+.++. +.. ++.+..++ +|+.|++++| .++.++ .+..+++|+.|+
T Consensus 238 --------~~~~l~~L~~L~l~~n~-l~~----------~~~~~~l~-~L~~L~l~~n-~l~~~~---~~~~l~~L~~L~ 293 (347)
T 4fmz_A 238 --------PLANLSQLTWLEIGTNQ-ISD----------INAVKDLT-KLKMLNVGSN-QISDIS---VLNNLSQLNSLF 293 (347)
T ss_dssp --------GGTTCTTCCEEECCSSC-CCC----------CGGGTTCT-TCCEEECCSS-CCCCCG---GGGGCTTCSEEE
T ss_pred --------chhcCCCCCEEECCCCc-cCC----------ChhHhcCC-CcCEEEccCC-ccCCCh---hhcCCCCCCEEE
Confidence 13344567777776653 111 23345566 8888888876 455543 355677888888
Q ss_pred EecCcchhhhhccCcchhhhhhccccccccccCCCcceeecccccccccccccCccccCCCccEEEEeccC
Q 042574 803 VYGCDSIKEIIAVEDEETEKELATNTIINTVTLPRLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCP 873 (929)
Q Consensus 803 i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~ 873 (929)
+++|. +..... .....+|+|+.|++++|+ +..++.... +++|++|++++|+
T Consensus 294 L~~n~-l~~~~~---------------~~l~~l~~L~~L~L~~n~-l~~~~~~~~---l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 294 LNNNQ-LGNEDM---------------EVIGGLTNLTTLFLSQNH-ITDIRPLAS---LSKMDSADFANQV 344 (347)
T ss_dssp CCSSC-CCGGGH---------------HHHHTCTTCSEEECCSSS-CCCCGGGGG---CTTCSEESSSCC-
T ss_pred CcCCc-CCCcCh---------------hHhhccccCCEEEccCCc-cccccChhh---hhccceeehhhhc
Confidence 88763 322211 111247788888888775 444433333 5678888888775
No 22
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=1.8e-20 Score=230.82 Aligned_cols=364 Identities=18% Similarity=0.116 Sum_probs=228.8
Q ss_pred eEEEcCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCC
Q 042574 478 FMVKAGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTN 557 (929)
Q Consensus 478 ~~~~~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 557 (929)
.....+.+++.+|. .++++++|++++|.+..+++..+.++++|++|++++|.....+++..|.++++|++|+|++|.
T Consensus 8 ~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred EEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 44556677888987 578999999999999988777788999999999999976777866667999999999999999
Q ss_pred Cccc-CcccccccccceeecccccccccCc-c--ccccCCCCEEEccCCCCcccc--ccccCCCCCCEEEccCCCCccCC
Q 042574 558 IEVL-PSSVSNLTNLRSLLLRWCRRLKRVP-S--VAKLLALQYLDLERTWIEEVP--EGMEMLENLSHLYLSSPPLKKFP 631 (929)
Q Consensus 558 i~~l-p~~i~~l~~L~~L~l~~~~~~~~~~-~--~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~~~~~~~~ 631 (929)
+..+ |..++++++|++|++++|......| . ++++++|++|++++|.+..++ ..++++++|++|++++|.++...
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence 9966 8889999999999999986655455 3 899999999999999998663 46899999999999999998877
Q ss_pred CCccCCC--CCccEEEeecCCchhcccHHHHhccc-----ccccEeEEEecccccc--hhcccccCCCCceeEEEEeccc
Q 042574 632 TGILPRL--RNLYKLKLSFGNEALRETVEEAARLS-----DGLDSFEGHFSELKDF--NIYVKSTDGRGSKHYCLLLSAY 702 (929)
Q Consensus 632 ~~~l~~l--~~L~~L~l~~~~~~~~~~~~~l~~l~-----~~L~~L~~~~~~l~~l--~~~~~~~~~~~l~~l~~~~~~~ 702 (929)
+..+..+ ++|+.|+++.|....... ..+.... ..|+.|.+....+... ...........+..+.+.....
T Consensus 165 ~~~l~~l~~~~L~~L~L~~n~l~~~~~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 165 EHELEPLQGKTLSFFSLAANSLYSRVS-VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp SGGGHHHHHCSSCCCEECCSBSCCCCC-CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred HHHcccccCCccceEECCCCccccccc-cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 7767776 889999998664322110 0111111 0266666654332211 0111111122233332221000
Q ss_pred cc----------ccccccC--cCCCceeEeecccccCCC-CcccCcccccceeeecccCcccccccCccccCcccccccc
Q 042574 703 RM----------GAFMITG--LELPKSVILNNYKICRGE-EPIVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFS 769 (929)
Q Consensus 703 ~~----------~~~~~~~--~~~~~~l~L~~~~~~~~~-~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~ 769 (929)
.. ......+ ...++.+.++...+.... ..+..+++|+.|.+.++.-.... ...+..++
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~---------~~~~~~l~ 314 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA---------DEAFYGLD 314 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC---------TTTTTTCS
T ss_pred cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC---------hHHhcCCC
Confidence 00 0000000 122444444444333221 23445566777766665422110 11234455
Q ss_pred cceeEEEEecCCCccccchhchhhhcCCccEEEEecCcchhhhhccCcchhhhhhccccccccccCCCcceeeccccccc
Q 042574 770 HDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDSIKEIIAVEDEETEKELATNTIINTVTLPRLKKLRFYFLREF 849 (929)
Q Consensus 770 ~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L 849 (929)
+|++|++++| .++.+++ ..+..+++|+.|+++++ .+..+.. .....+++|+.|+++++ .+
T Consensus 315 -~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N-~i~~~~~---------------~~~~~l~~L~~L~Ls~N-~l 374 (844)
T 3j0a_A 315 -NLQVLNLSYN-LLGELYS-SNFYGLPKVAYIDLQKN-HIAIIQD---------------QTFKFLEKLQTLDLRDN-AL 374 (844)
T ss_dssp -SCCEEEEESC-CCSCCCS-CSCSSCTTCCEEECCSC-CCCCCCS---------------SCSCSCCCCCEEEEETC-CS
T ss_pred -CCCEEECCCC-CCCccCH-HHhcCCCCCCEEECCCC-CCCccCh---------------hhhcCCCCCCEEECCCC-CC
Confidence 7777777775 3444322 23456677777777765 3433321 11234677777777775 34
Q ss_pred ccccccCccccCCCccEEEEeccCCCccccCC
Q 042574 850 KRFCSNNGVLVCNSLQEIKVRGCPKLKRLSLS 881 (929)
Q Consensus 850 ~~i~~~~~~~~~p~L~~L~I~~C~~L~~lP~~ 881 (929)
+.++ .+|+|+.|.+.+|. ++.+|..
T Consensus 375 ~~i~------~~~~L~~L~l~~N~-l~~l~~~ 399 (844)
T 3j0a_A 375 TTIH------FIPSIPDIFLSGNK-LVTLPKI 399 (844)
T ss_dssp CCCS------SCCSCSEEEEESCC-CCCCCCC
T ss_pred Cccc------CCCCcchhccCCCC-ccccccc
Confidence 4433 26677777777763 5566553
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=4.1e-20 Score=217.41 Aligned_cols=142 Identities=20% Similarity=0.252 Sum_probs=106.8
Q ss_pred EEEcCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCC
Q 042574 479 MVKAGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNI 558 (929)
Q Consensus 479 ~~~~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 558 (929)
....+.+++.+|.. ..+++++|++++|.+..+++..+..+++|++|++++|. +..+++..|.++++|++|++++|.+
T Consensus 36 l~ls~~~L~~ip~~--~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l 112 (562)
T 3a79_B 36 VDYSNRNLTHVPKD--LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNRL 112 (562)
T ss_dssp EECTTSCCCSCCTT--SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EEcCCCCCccCCCC--CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCCcC
Confidence 34455667777764 34788888888888888877667788888888888886 5566555567888888888888888
Q ss_pred cccCcccccccccceeecccccccc-cCc-cccccCCCCEEEccCCCCccccccccCCCCC--CEEEccCCCC
Q 042574 559 EVLPSSVSNLTNLRSLLLRWCRRLK-RVP-SVAKLLALQYLDLERTWIEEVPEGMEMLENL--SHLYLSSPPL 627 (929)
Q Consensus 559 ~~lp~~i~~l~~L~~L~l~~~~~~~-~~~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L--~~L~l~~~~~ 627 (929)
+.+|.. .+++|++|++++|.... ..| .++++++|++|++++|.+... .+..+++| ++|++++|.+
T Consensus 113 ~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 113 QNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSC
T ss_pred CccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccc
Confidence 888876 78888888888875433 233 688888888888888877752 34555555 8888888876
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.85 E-value=3.2e-21 Score=229.40 Aligned_cols=327 Identities=10% Similarity=0.092 Sum_probs=232.9
Q ss_pred CCCccc--ccccccEEEcccCCCC-cCCCCCCCCCCcccEEEcccCC-cCc-cCcHHHHccC------CCCcEEEecCCC
Q 042574 489 FPGEQE--WEENLERVSLMDNHIE-EIPSNMSPHCKILSTLLLQRNG-YLQ-RIPECFFMHM------RGLKVLNLSHTN 557 (929)
Q Consensus 489 ~p~~~~--~~~~l~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~l------~~L~~L~l~~~~ 557 (929)
+|.... ..+++++|++++|.+. .+|. .+.++++|++|++++|. ... .+|..+ +.+ ++|++|++++|.
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLKDDW-QALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCT-TTTTCSSCCEEECTTCTTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChH-HHhcCCCCCEEECcCCCCCccccchHHH-HhhhccccCCCCCEEECCCCc
Confidence 888777 7889999999999866 4554 45589999999999997 444 588776 454 999999999999
Q ss_pred CcccCc--ccccccccceeecccccccccCccccccCCCCEEEccCCCCccccccccCCCC-CCEEEccCCCCccCCCCc
Q 042574 558 IEVLPS--SVSNLTNLRSLLLRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLEN-LSHLYLSSPPLKKFPTGI 634 (929)
Q Consensus 558 i~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~-L~~L~l~~~~~~~~~~~~ 634 (929)
++.+|. .++.+++|++|++++|.....+|.++.+++|++|++++|.+..+|..+.++++ |++|++++|.++.+|..
T Consensus 317 l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~- 395 (636)
T 4eco_A 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNI- 395 (636)
T ss_dssp CSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSC-
T ss_pred CCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchh-
Confidence 999998 89999999999999986654788899999999999999999999999999999 99999999999988764
Q ss_pred cCCCC--CccEEEeecCCchhcccHHHHh-------cccccccEeEEEecccccchhcccccCCCCceeEEEEecccccc
Q 042574 635 LPRLR--NLYKLKLSFGNEALRETVEEAA-------RLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRMG 705 (929)
Q Consensus 635 l~~l~--~L~~L~l~~~~~~~~~~~~~l~-------~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~ 705 (929)
+..++ +|+.|++++|.... .....+. .+. +|+.|.+....+..++....
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~-~~p~~l~~~~~~~~~~~-~L~~L~Ls~N~l~~lp~~~~-------------------- 453 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGS-VDGKNFDPLDPTPFKGI-NVSSINLSNNQISKFPKELF-------------------- 453 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTT-TTTCSSCTTCSSCCCCC-CEEEEECCSSCCCSCCTHHH--------------------
T ss_pred hhhcccCccCEEECcCCcCCC-cchhhhcccccccccCC-CCCEEECcCCccCcCCHHHH--------------------
Confidence 55544 89999999775321 1111122 334 66666665554443222110
Q ss_pred cccccCcCCCceeEeecccccCCCCcc--------cCcccccceeeecccCcccccccCccccCccccc--ccccceeEE
Q 042574 706 AFMITGLELPKSVILNNYKICRGEEPI--------VLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIG--KFSHDLKVL 775 (929)
Q Consensus 706 ~~~~~~~~~~~~l~L~~~~~~~~~~~~--------~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~--~~~~~L~~L 775 (929)
..++.++.+.+++..+....... ..+++|+.|.+.++.-. .++ ..+. .++ +|+.|
T Consensus 454 ----~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp---------~~~~~~~l~-~L~~L 518 (636)
T 4eco_A 454 ----STGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLS---------DDFRATTLP-YLVGI 518 (636)
T ss_dssp ----HTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCC---------GGGSTTTCT-TCCEE
T ss_pred ----ccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccC---------hhhhhccCC-CcCEE
Confidence 01233445555544444222111 12238899988887522 221 2233 577 99999
Q ss_pred EEecCCCccccchhchhhhcCCccEEEEecCcch-----hhhhccCcchhhhhhccccccccccCCCcceeecccccccc
Q 042574 776 SFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDSI-----KEIIAVEDEETEKELATNTIINTVTLPRLKKLRFYFLREFK 850 (929)
Q Consensus 776 ~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~l-----~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~ 850 (929)
+|++| .++.+|. .+..+++|++|+++++..+ ...++ .....+++|+.|+|+++. +.
T Consensus 519 ~Ls~N-~l~~ip~--~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p---------------~~l~~l~~L~~L~Ls~N~-l~ 579 (636)
T 4eco_A 519 DLSYN-SFSKFPT--QPLNSSTLKGFGIRNQRDAQGNRTLREWP---------------EGITLCPSLTQLQIGSND-IR 579 (636)
T ss_dssp ECCSS-CCSSCCC--GGGGCSSCCEEECCSCBCTTCCBCCCCCC---------------TTGGGCSSCCEEECCSSC-CC
T ss_pred ECCCC-CCCCcCh--hhhcCCCCCEEECCCCcccccCcccccCh---------------HHHhcCCCCCEEECCCCc-CC
Confidence 99996 5566654 4668999999999765422 11110 123368999999999975 48
Q ss_pred cccccCccccCCCccEEEEeccCCCcccc
Q 042574 851 RFCSNNGVLVCNSLQEIKVRGCPKLKRLS 879 (929)
Q Consensus 851 ~i~~~~~~~~~p~L~~L~I~~C~~L~~lP 879 (929)
.++. . .+++|+.|++++|+ +..++
T Consensus 580 ~ip~--~--~~~~L~~L~Ls~N~-l~~~~ 603 (636)
T 4eco_A 580 KVNE--K--ITPNISVLDIKDNP-NISID 603 (636)
T ss_dssp BCCS--C--CCTTCCEEECCSCT-TCEEE
T ss_pred ccCH--h--HhCcCCEEECcCCC-Ccccc
Confidence 8876 3 23899999999997 55444
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=2.3e-20 Score=222.16 Aligned_cols=369 Identities=15% Similarity=0.103 Sum_probs=216.2
Q ss_pred cccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCc--EEEecCCCCcccCccccccc--
Q 042574 494 EWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLK--VLNLSHTNIEVLPSSVSNLT-- 569 (929)
Q Consensus 494 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~--~L~l~~~~i~~lp~~i~~l~-- 569 (929)
...+++++|++++|.+..++...+..+++|++|++++|. +..++...+..+++|+ .|++++|.+..++.......
T Consensus 126 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L 204 (606)
T 3t6q_A 126 HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF 204 (606)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEE
T ss_pred ccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCccCccChhHhhhccc
Confidence 345667777777777776542223347777788877776 5555555557777777 77777777765544333222
Q ss_pred --------------------------------------------------ccceeecccccccccCc-cccccCCCCEEE
Q 042574 570 --------------------------------------------------NLRSLLLRWCRRLKRVP-SVAKLLALQYLD 598 (929)
Q Consensus 570 --------------------------------------------------~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~ 598 (929)
+|+.|++++|......+ .+..+++|++|+
T Consensus 205 ~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 284 (606)
T 3t6q_A 205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD 284 (606)
T ss_dssp EEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEE
T ss_pred cccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEe
Confidence 34455555543222222 367777888888
Q ss_pred ccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCCchhcccHHHHhcccccccEeEEEecccc
Q 042574 599 LERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDGLDSFEGHFSELK 678 (929)
Q Consensus 599 l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~~l~ 678 (929)
+++|.++.+|..+.++++|++|++++|.+..+++..+.++++|++|++++|..........+..+. +|+.|.+....+.
T Consensus 285 l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~l~ 363 (606)
T 3t6q_A 285 LTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE-NLRELDLSHDDIE 363 (606)
T ss_dssp CTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT-TCCEEECCSSCCC
T ss_pred ccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC-cCCEEECCCCccc
Confidence 888877788777777888888888888777776656777788888888766432222222345566 7777777655554
Q ss_pred cchhcc-cccCCCCceeEEEEecccccc-cccccCcCCCceeEeecccccCCC--CcccCcccccceeeecccCcccccc
Q 042574 679 DFNIYV-KSTDGRGSKHYCLLLSAYRMG-AFMITGLELPKSVILNNYKICRGE--EPIVLPEDVQFLRMFEVSDVASLND 754 (929)
Q Consensus 679 ~l~~~~-~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~l~L~~~~~~~~~--~~~~~~~~L~~L~i~~~~~~~~l~~ 754 (929)
...... .......++.+.+..+..... .......+.++.+.+....+.... ..+..+++|+.|.+.++.-....
T Consensus 364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-- 441 (606)
T 3t6q_A 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS-- 441 (606)
T ss_dssp EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTC--
T ss_pred cccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcC--
Confidence 332100 111223555555444432221 112223445666666665554432 22555677777777766422111
Q ss_pred cCccccCcccccccccceeEEEEecCCCccc-cchhchhhhcCCccEEEEecCcchhhhhccCcchhhhhhccccccccc
Q 042574 755 VLPREQGLVNIGKFSHDLKVLSFVHCHNLKN-LFSLWLLPALQNLEVLKVYGCDSIKEIIAVEDEETEKELATNTIINTV 833 (929)
Q Consensus 755 ~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~-l~~~~~l~~L~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~ 833 (929)
...++.++ +|+.|++++|.--.. ++....+..+++|++|++++| .++.++. ....
T Consensus 442 -------~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~---------------~~~~ 497 (606)
T 3t6q_A 442 -------EQLFDGLP-ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQ---------------HAFT 497 (606)
T ss_dssp -------TTTTTTCT-TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECT---------------TTTT
T ss_pred -------HHHHhCCC-CCCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccCh---------------hhhc
Confidence 22235566 888888888643221 222245667888888888886 3443321 1223
Q ss_pred cCCCcceeecccccccccccccCccccCCCccEEEEeccCCCccccC-C---CCccCCCCCCCCC
Q 042574 834 TLPRLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCPKLKRLSL-S---LPLLDNGQPSPPP 894 (929)
Q Consensus 834 ~~p~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~~L~~lP~-~---l~~l~~~~~~~~~ 894 (929)
.+++|+.|+++++. +..+.. .....+++| .|++++|. ++.+|. . +++++.+.+.++|
T Consensus 498 ~l~~L~~L~Ls~N~-l~~~~~-~~l~~l~~L-~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 498 SLKMMNHVDLSHNR-LTSSSI-EALSHLKGI-YLNLASNH-ISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp TCTTCCEEECCSSC-CCGGGG-GGGTTCCSC-EEECCSSC-CCCCCGGGHHHHHTSSEEECTTCC
T ss_pred cccCCCEEECCCCc-cCcCCh-hHhCccccc-EEECcCCc-ccccCHhhcccCCCCCEEeCCCCC
Confidence 57888889888874 444332 145567788 88888884 666554 2 3455555555554
No 26
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=1.7e-20 Score=213.28 Aligned_cols=163 Identities=17% Similarity=0.201 Sum_probs=125.5
Q ss_pred ccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCccccccccccee
Q 042574 495 WEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSL 574 (929)
Q Consensus 495 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L 574 (929)
..+++++|++++|.+..+| . +..+++|++|++++|. +..+| ++.+++|++|++++|.++.+| ++.+++|++|
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~-~-l~~l~~L~~L~Ls~n~-l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT-G-IEKLTGLTKLICTSNN-ITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT-T-GGGCTTCSEEECCSSC-CSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred HcCCCCEEEccCCCcccCh-h-hcccCCCCEEEccCCc-CCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 3567899999999888876 3 4578999999999997 66665 578999999999999988875 8889999999
Q ss_pred ecccccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCC-CccCCCCccCCCCCccEEEeecCCchh
Q 042574 575 LLRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPP-LKKFPTGILPRLRNLYKLKLSFGNEAL 653 (929)
Q Consensus 575 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~ 653 (929)
++++|. +..+| ++.+++|++|++++|.++.+| ++++++|++|++++|. +..+ .+..+++|++|++++|....
T Consensus 112 ~L~~N~-l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 112 NCDTNK-LTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp ECCSSC-CSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCC
T ss_pred ECCCCc-CCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccce
Confidence 999884 44455 888999999999999888875 7889999999999984 4444 26788999999998764222
Q ss_pred cccHHHHhcccccccEeEEEeccc
Q 042574 654 RETVEEAARLSDGLDSFEGHFSEL 677 (929)
Q Consensus 654 ~~~~~~l~~l~~~L~~L~~~~~~l 677 (929)
. . +..+. +|+.|.+....+
T Consensus 185 l---~-l~~l~-~L~~L~l~~N~l 203 (457)
T 3bz5_A 185 L---D-VSQNK-LLNRLNCDTNNI 203 (457)
T ss_dssp C---C-CTTCT-TCCEEECCSSCC
T ss_pred e---c-cccCC-CCCEEECcCCcC
Confidence 1 1 34445 666665544433
No 27
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=6e-21 Score=213.72 Aligned_cols=303 Identities=15% Similarity=0.155 Sum_probs=226.4
Q ss_pred cccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccC-ccccccccccee
Q 042574 496 EENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLP-SSVSNLTNLRSL 574 (929)
Q Consensus 496 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L 574 (929)
..+++++++.++.+..+|...+..+++|++|++++|. +..++...|..+++|++|++++|.++.+| ..++.+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 4689999999999999998877789999999999997 67777666789999999999999999775 458999999999
Q ss_pred ecccccccccCc-c-ccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCCc
Q 042574 575 LLRWCRRLKRVP-S-VAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGNE 651 (929)
Q Consensus 575 ~l~~~~~~~~~~-~-~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 651 (929)
++++|. +..+| . +.++++|++|++++|.+..++.. +.++++|++|++++|.++.++ +..+++|+.|++++|..
T Consensus 123 ~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred ECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccc
Confidence 999984 55666 4 68999999999999999987654 889999999999999998875 46788999999987642
Q ss_pred hhcccHHHHhcccccccEeEEEecccccchhcccccCCCCceeEEEEecccccccccccCcCCCceeEeecccccCCCCc
Q 042574 652 ALRETVEEAARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMITGLELPKSVILNNYKICRGEEP 731 (929)
Q Consensus 652 ~~~~~~~~l~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~L~~~~~~~~~~~ 731 (929)
.. +.... +|+.|.+....+..++.. . ...++.+.+.+..+... ..
T Consensus 199 ~~------~~~~~-~L~~L~l~~n~l~~~~~~----~-----------------------~~~L~~L~l~~n~l~~~-~~ 243 (390)
T 3o6n_A 199 ST------LAIPI-AVEELDASHNSINVVRGP----V-----------------------NVELTILKLQHNNLTDT-AW 243 (390)
T ss_dssp SE------EECCS-SCSEEECCSSCCCEEECC----C-----------------------CSSCCEEECCSSCCCCC-GG
T ss_pred cc------cCCCC-cceEEECCCCeeeecccc----c-----------------------cccccEEECCCCCCccc-HH
Confidence 21 11223 677777655544332111 0 12244555555444432 34
Q ss_pred ccCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchhhhcCCccEEEEecCcchhh
Q 042574 732 IVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDSIKE 811 (929)
Q Consensus 732 ~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~l~~ 811 (929)
+..+++|+.|.+.++.-.... ...+..++ +|+.|++++| .++.++. ....+++|++|++++| .++.
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~---------~~~~~~l~-~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~n-~l~~ 309 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIM---------YHPFVKMQ-RLERLYISNN-RLVALNL--YGQPIPTLKVLDLSHN-HLLH 309 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEE---------SGGGTTCS-SCCEEECCSS-CCCEEEC--SSSCCTTCCEEECCSS-CCCC
T ss_pred HcCCCCccEEECCCCcCCCcC---------hhHccccc-cCCEEECCCC-cCcccCc--ccCCCCCCCEEECCCC-ccee
Confidence 566788999999887522211 23345677 9999999996 5676654 3357889999999997 4555
Q ss_pred hhccCcchhhhhhccccccccccCCCcceeecccccccccccccCccccCCCccEEEEeccC
Q 042574 812 IIAVEDEETEKELATNTIINTVTLPRLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCP 873 (929)
Q Consensus 812 i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~ 873 (929)
++. ....+++|+.|++++++ +..++ ...+++|++|+++++|
T Consensus 310 ~~~----------------~~~~l~~L~~L~L~~N~-i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 310 VER----------------NQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp CGG----------------GHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred cCc----------------cccccCcCCEEECCCCc-cceeC----chhhccCCEEEcCCCC
Confidence 431 12358999999999975 66663 4567899999999875
No 28
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=2e-20 Score=221.21 Aligned_cols=129 Identities=19% Similarity=0.305 Sum_probs=63.2
Q ss_pred CCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCc-ccccccccceeecccccccccCc-cccccCCCCEE
Q 042574 520 CKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPS-SVSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYL 597 (929)
Q Consensus 520 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L 597 (929)
+++++.+++++|. +..+|..+|.++++|++|+|++|.++.+|. .++.+++|++|++++|......| .++++++|++|
T Consensus 50 l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 3445555555543 444454444555555555555555554432 44555555555555543222222 24555555555
Q ss_pred EccCCCCcccccc-ccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecC
Q 042574 598 DLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFG 649 (929)
Q Consensus 598 ~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 649 (929)
++++|.++.+|.. +.++++|++|++++|.++.+++..+.++++|++|++++|
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 181 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC
Confidence 5555555555444 245555555555555555554444455555555555443
No 29
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=4.2e-20 Score=223.01 Aligned_cols=386 Identities=17% Similarity=0.112 Sum_probs=226.0
Q ss_pred EEEcCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCC
Q 042574 479 MVKAGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNI 558 (929)
Q Consensus 479 ~~~~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 558 (929)
....+.++.++|.. .+.++++|++++|.+..++...+.++++|++|++++|. +..+++..|.++++|++|++++|.+
T Consensus 9 ~~cs~~~L~~ip~~--~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 9 ADCSHLKLTQVPDD--LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp EECCSSCCSSCCSC--SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred eECCCCCccccccc--cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCcc
Confidence 34456677888864 35789999999999999988777889999999999997 5666555668999999999999999
Q ss_pred cccCc-ccccccccceeecccccccccCc-cccccCCCCEEEccCCCCcccc-ccccCCCCCCEEEccCCCCccCCCCcc
Q 042574 559 EVLPS-SVSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIEEVP-EGMEMLENLSHLYLSSPPLKKFPTGIL 635 (929)
Q Consensus 559 ~~lp~-~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~l 635 (929)
+.+|. .++++++|++|++++|......| .++++++|++|++++|.+...+ ..+.++++|++|++++|.++.+++..+
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 165 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEEL 165 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHH
T ss_pred CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHh
Confidence 98887 58999999999999986544444 6899999999999999888664 458889999999999999888776544
Q ss_pred C--CCCCccEEEeecCCchhcccHHHHhccc--------------------------ccccEeEEEecccccchh-cccc
Q 042574 636 P--RLRNLYKLKLSFGNEALRETVEEAARLS--------------------------DGLDSFEGHFSELKDFNI-YVKS 686 (929)
Q Consensus 636 ~--~l~~L~~L~l~~~~~~~~~~~~~l~~l~--------------------------~~L~~L~~~~~~l~~l~~-~~~~ 686 (929)
. .+++|++|+++.|... ......+..+. .+|+.|.+....+..... ....
T Consensus 166 ~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 244 (680)
T 1ziw_A 166 DIFANSSLKKLELSSNQIK-EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244 (680)
T ss_dssp GGGTTCEESEEECTTCCCC-CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG
T ss_pred hccccccccEEECCCCccc-ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc
Confidence 3 5688999999866421 11111222233 033333332222211100 0000
Q ss_pred cCCCCceeEEEEeccccccc-ccccCcCCCceeEeecccccCCC-CcccCcccccceeeecccCcccccccCccccCcc-
Q 042574 687 TDGRGSKHYCLLLSAYRMGA-FMITGLELPKSVILNNYKICRGE-EPIVLPEDVQFLRMFEVSDVASLNDVLPREQGLV- 763 (929)
Q Consensus 687 ~~~~~l~~l~~~~~~~~~~~-~~~~~~~~~~~l~L~~~~~~~~~-~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~- 763 (929)
.....++.+.+..+...... .....++.++.+.+....+.... ..+..+++|+.|.+.++.....+. ...++
T Consensus 245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-----~~~lp~ 319 (680)
T 1ziw_A 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS-----LASLPK 319 (680)
T ss_dssp GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-----------CCE
T ss_pred cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc-----cccccc
Confidence 00112333333222221111 11122333444554444333221 233445555555554432111000 00111
Q ss_pred ----cccccccceeEEEEecCCCccccchhchhhhcCCccEEEEecCc-chhhhhccCcch-----------hhhhhccc
Q 042574 764 ----NIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCD-SIKEIIAVEDEE-----------TEKELATN 827 (929)
Q Consensus 764 ----~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~-~l~~i~~~~~~~-----------~~~~~~~~ 827 (929)
.+..++ +|++|++++| .++.+++ ..+..+++|++|++++|. .+..+....-.. ........
T Consensus 320 i~~~~~~~l~-~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~ 396 (680)
T 1ziw_A 320 IDDFSFQWLK-CLEHLNMEDN-DIPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 396 (680)
T ss_dssp ECTTTTTTCT-TCCEEECCSC-CBCCCCT-TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEE
T ss_pred cChhhcccCC-CCCEEECCCC-ccCCCCh-hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeE
Confidence 234456 8888888875 3444433 335677788888887763 111111000000 00000000
Q ss_pred cccccccCCCcceeecccccccccccccCccccCCCccEEEEeccCCCccc
Q 042574 828 TIINTVTLPRLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCPKLKRL 878 (929)
Q Consensus 828 ~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~~L~~l 878 (929)
.......+++|+.|+++++.--..++. .....+++|++|++++|. +..+
T Consensus 397 ~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~ 445 (680)
T 1ziw_A 397 ESDAFSWLGHLEVLDLGLNEIGQELTG-QEWRGLENIFEIYLSYNK-YLQL 445 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCEEECCS-GGGTTCTTCCEEECCSCS-EEEC
T ss_pred ChhhhhCCCCCCEEeCCCCcCccccCc-ccccCcccccEEecCCCC-ccee
Confidence 001223577888888887654333432 134567888888888875 4443
No 30
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.84 E-value=2.2e-20 Score=227.49 Aligned_cols=368 Identities=19% Similarity=0.140 Sum_probs=229.2
Q ss_pred cCCCcccc-cccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCc-ccCccc
Q 042574 488 KFPGEQEW-EENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIE-VLPSSV 565 (929)
Q Consensus 488 ~~p~~~~~-~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~lp~~i 565 (929)
.+|..... .+++++|++++|.+....+..+..+++|++|++++|.....+|...+.++++|++|++++|.++ .+|..+
T Consensus 284 ~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l 363 (768)
T 3rgz_A 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363 (768)
T ss_dssp SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH
T ss_pred ccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHH
Confidence 34443322 3678888888887764444445578888888888887555777776678888888888888877 777777
Q ss_pred cccc-ccceeecccccccccCc-cccc--cCCCCEEEccCCCCc-cccccccCCCCCCEEEccCCCCccCCCCccCCCCC
Q 042574 566 SNLT-NLRSLLLRWCRRLKRVP-SVAK--LLALQYLDLERTWIE-EVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRN 640 (929)
Q Consensus 566 ~~l~-~L~~L~l~~~~~~~~~~-~~~~--l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 640 (929)
..+. +|++|++++|......| .+.. +++|++|++++|.+. .+|..+.++++|++|++++|.++...+..+.++++
T Consensus 364 ~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~ 443 (768)
T 3rgz_A 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK 443 (768)
T ss_dssp HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred HhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCC
Confidence 7776 77777777776544444 4444 667777777777666 56666777777777777777776555555677777
Q ss_pred ccEEEeecCCchhcccHHHHhcccccccEeEEEeccccc-chhcccccCCCCceeEEEEecccc-cccccccCcCCCcee
Q 042574 641 LYKLKLSFGNEALRETVEEAARLSDGLDSFEGHFSELKD-FNIYVKSTDGRGSKHYCLLLSAYR-MGAFMITGLELPKSV 718 (929)
Q Consensus 641 L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~~l~~-l~~~~~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~l 718 (929)
|+.|+++.|... ......+..+. +|+.|.+....+.. .+... .....|+.+.+..+... ..+.....++.++.+
T Consensus 444 L~~L~L~~n~l~-~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 519 (768)
T 3rgz_A 444 LRDLKLWLNMLE-GEIPQELMYVK-TLETLILDFNDLTGEIPSGL--SNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519 (768)
T ss_dssp CCEEECCSSCCC-SCCCGGGGGCT-TCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred CCEEECCCCccc-CcCCHHHcCCC-CceEEEecCCcccCcCCHHH--hcCCCCCEEEccCCccCCcCChHHhcCCCCCEE
Confidence 777777755422 12223445555 67777665554432 11111 12234555555444433 122223334556666
Q ss_pred EeecccccCCC-CcccCcccccceeeecccCcccccccCcc---------------------------------------
Q 042574 719 ILNNYKICRGE-EPIVLPEDVQFLRMFEVSDVASLNDVLPR--------------------------------------- 758 (929)
Q Consensus 719 ~L~~~~~~~~~-~~~~~~~~L~~L~i~~~~~~~~l~~~~~~--------------------------------------- 758 (929)
.++++.+.+.. ..+..+++|+.|++.++.-...++.....
T Consensus 520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (768)
T 3rgz_A 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599 (768)
T ss_dssp ECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred ECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence 66666555322 34556677777777666432111110000
Q ss_pred ----------------------ccCcccccccccceeEEEEecCCCccccchhchhhhcCCccEEEEecCcchh-hhhcc
Q 042574 759 ----------------------EQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDSIK-EIIAV 815 (929)
Q Consensus 759 ----------------------~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~l~-~i~~~ 815 (929)
...+..++.++ +|+.|+++++.--..+|. .+..+++|+.|+++++. ++ .++
T Consensus 600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~-~L~~LdLs~N~l~g~ip~--~l~~l~~L~~L~Ls~N~-l~g~ip-- 673 (768)
T 3rgz_A 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG-SMMFLDMSYNMLSGYIPK--EIGSMPYLFILNLGHND-ISGSIP-- 673 (768)
T ss_dssp CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB-CCCEEECCSSCCBSCCCG--GGGGCTTCCEEECCSSC-CCSCCC--
T ss_pred cchhhhccccccccccccceecccCchhhhccc-cccEEECcCCcccccCCH--HHhccccCCEEeCcCCc-cCCCCC--
Confidence 00011234466 899999999754444543 56789999999999863 43 332
Q ss_pred CcchhhhhhccccccccccCCCcceeecccccccccccccCccccCCCccEEEEeccCCCccccCC
Q 042574 816 EDEETEKELATNTIINTVTLPRLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCPKLKRLSLS 881 (929)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~~L~~lP~~ 881 (929)
.....+++|+.|+|+++.--..+|. ....+++|++|++++|+--..+|.+
T Consensus 674 --------------~~l~~L~~L~~LdLs~N~l~g~ip~--~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 674 --------------DEVGDLRGLNILDLSSNKLDGRIPQ--AMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp --------------GGGGGCTTCCEEECCSSCCEECCCG--GGGGCCCCSEEECCSSEEEEECCSS
T ss_pred --------------hHHhCCCCCCEEECCCCcccCcCCh--HHhCCCCCCEEECcCCcccccCCCc
Confidence 1233689999999999865556766 6677899999999999755567763
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.3e-20 Score=222.86 Aligned_cols=150 Identities=19% Similarity=0.305 Sum_probs=129.4
Q ss_pred cccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCc-cccccccccee
Q 042574 496 EENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPS-SVSNLTNLRSL 574 (929)
Q Consensus 496 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L 574 (929)
..+++.+++.+|.+..+|...+..+++|++|++++|. +..++...|..+++|++|+|++|.++.+|. .++++++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 4678999999999999998888889999999999997 666766566899999999999999997765 46999999999
Q ss_pred ecccccccccCc-c-ccccCCCCEEEccCCCCccccc-cccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCC
Q 042574 575 LLRWCRRLKRVP-S-VAKLLALQYLDLERTWIEEVPE-GMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGN 650 (929)
Q Consensus 575 ~l~~~~~~~~~~-~-~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 650 (929)
++++|. +..+| . ++++++|++|++++|.+..+++ .+.++++|++|++++|.++.++ ++.+++|+.|++++|.
T Consensus 129 ~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 129 VLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL 203 (597)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCc
Confidence 999985 45555 4 6899999999999999998766 4899999999999999998875 4668889999998764
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=4.2e-20 Score=217.13 Aligned_cols=359 Identities=17% Similarity=0.161 Sum_probs=232.1
Q ss_pred CcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcc--cCcccccc
Q 042574 491 GEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEV--LPSSVSNL 568 (929)
Q Consensus 491 ~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~--lp~~i~~l 568 (929)
......+++++|++++|.+..+++..+..+++|++|++++|. +..++...|+++++|++|++++|.++. .|..++++
T Consensus 44 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 44 GDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp STTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 344556789999999999998887777899999999999997 677777767999999999999999984 46788999
Q ss_pred cccceeecccccccccCc--cccccCCCCEEEccCCCCcc-ccccccCC------------------------CCCCEEE
Q 042574 569 TNLRSLLLRWCRRLKRVP--SVAKLLALQYLDLERTWIEE-VPEGMEML------------------------ENLSHLY 621 (929)
Q Consensus 569 ~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-lp~~i~~l------------------------~~L~~L~ 621 (929)
++|++|++++|..+..+| .+.++++|++|++++|.+.. .|..+.++ ++|++|+
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 202 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEE
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEE
Confidence 999999999987667666 58899999999999998875 45555554 4555555
Q ss_pred ccCCCCccCC---CCccCCCCCccEEEeecCCchhcccHHHH----hcccccccEe------------------------
Q 042574 622 LSSPPLKKFP---TGILPRLRNLYKLKLSFGNEALRETVEEA----ARLSDGLDSF------------------------ 670 (929)
Q Consensus 622 l~~~~~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~~~~l----~~l~~~L~~L------------------------ 670 (929)
+++|.++..+ ......+++|+.|+++.+... ......+ ..+. +|+.+
T Consensus 203 L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~l~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~~~~l 280 (549)
T 2z81_A 203 LRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT-DESFNELLKLLRYIL-ELSEVEFDDCTLNGLGDFNPSESDVVSEL 280 (549)
T ss_dssp EESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEE-HHHHHHHHGGGGGCT-TCCEEEEESCEEECCSCCCCCTTTCCCCC
T ss_pred ccCCccccccccccchhhhhhcccceeccccccc-hhHHHHHHHHhhhhc-cccccccccccccccccccccchhhhhhh
Confidence 5555554431 111233455555555433211 1111111 1111 22222
Q ss_pred -----------------------------------EEEecccccchhcccccCCCCceeEEEEeccccccc----ccccC
Q 042574 671 -----------------------------------EGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRMGA----FMITG 711 (929)
Q Consensus 671 -----------------------------------~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~----~~~~~ 711 (929)
.+....+..++.... .....++.+.+..+...... .....
T Consensus 281 ~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 359 (549)
T 2z81_A 281 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFS-QHLKSLEFLDLSENLMVEEYLKNSACKGA 359 (549)
T ss_dssp TTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHH-HHCTTCCEEECCSSCCCHHHHHHHTCTTS
T ss_pred cccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHH-hcCccccEEEccCCccccccccchhhhhc
Confidence 222222211111100 12345666665555443211 11233
Q ss_pred cCCCceeEeecccccCCC---CcccCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccch
Q 042574 712 LELPKSVILNNYKICRGE---EPIVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFS 788 (929)
Q Consensus 712 ~~~~~~l~L~~~~~~~~~---~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~ 788 (929)
++.++.+.++++.+.... ..+..+++|+.|++.++. +..++ ..+..++ +|++|++++|. ++.++.
T Consensus 360 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp---------~~~~~~~-~L~~L~Ls~N~-l~~l~~ 427 (549)
T 2z81_A 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMP---------DSCQWPE-KMRFLNLSSTG-IRVVKT 427 (549)
T ss_dssp STTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCC---------SCCCCCT-TCCEEECTTSC-CSCCCT
T ss_pred cccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-CccCC---------hhhcccc-cccEEECCCCC-cccccc
Confidence 566788888777664422 235677899999998874 33221 2234566 99999999974 666543
Q ss_pred hchhhhcCCccEEEEecCcchhhhhccCcchhhhhhccccccccccCCCcceeecccccccccccccCccccCCCccEEE
Q 042574 789 LWLLPALQNLEVLKVYGCDSIKEIIAVEDEETEKELATNTIINTVTLPRLKKLRFYFLREFKRFCSNNGVLVCNSLQEIK 868 (929)
Q Consensus 789 ~~~l~~L~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~ 868 (929)
. + .++|++|++++| .++.++ ..+|+|+.|+++++ +++.++. ...+++|++|+
T Consensus 428 ~--~--~~~L~~L~Ls~N-~l~~~~-------------------~~l~~L~~L~Ls~N-~l~~ip~---~~~l~~L~~L~ 479 (549)
T 2z81_A 428 C--I--PQTLEVLDVSNN-NLDSFS-------------------LFLPRLQELYISRN-KLKTLPD---ASLFPVLLVMK 479 (549)
T ss_dssp T--S--CTTCSEEECCSS-CCSCCC-------------------CCCTTCCEEECCSS-CCSSCCC---GGGCTTCCEEE
T ss_pred h--h--cCCceEEECCCC-Chhhhc-------------------ccCChhcEEECCCC-ccCcCCC---cccCccCCEEe
Confidence 1 1 258999999997 454332 25899999999997 6777775 34689999999
Q ss_pred EeccCCCccccCC-C---CccCCCCCCCCC
Q 042574 869 VRGCPKLKRLSLS-L---PLLDNGQPSPPP 894 (929)
Q Consensus 869 I~~C~~L~~lP~~-l---~~l~~~~~~~~~ 894 (929)
+++| +++.+|.. + ++++.+++.++|
T Consensus 480 Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 480 ISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp CCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred cCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 9998 58877653 3 344444454444
No 33
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=8.9e-20 Score=215.44 Aligned_cols=351 Identities=19% Similarity=0.173 Sum_probs=229.9
Q ss_pred ccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCc-cccccccc
Q 042574 493 QEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPS-SVSNLTNL 571 (929)
Q Consensus 493 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L 571 (929)
....+++++|++++|.+..++...+.++++|++|++++|. +..+++..|.++++|++|++++|.++.+|. .++.+++|
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 126 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccCHhhhcCccccccccccccccccCCCccccccccc
Confidence 3456789999999999888887777889999999999987 666666666889999999999999888775 58899999
Q ss_pred ceeecccccccc-cCc-cccccCCCCEEEccCCCCccccc-cccCCCCC----CEEEccCCCCccCCCCccCCCCCccEE
Q 042574 572 RSLLLRWCRRLK-RVP-SVAKLLALQYLDLERTWIEEVPE-GMEMLENL----SHLYLSSPPLKKFPTGILPRLRNLYKL 644 (929)
Q Consensus 572 ~~L~l~~~~~~~-~~~-~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L----~~L~l~~~~~~~~~~~~l~~l~~L~~L 644 (929)
++|++++|.... .+| .++++++|++|++++|.+..++. .+..+++| ++|++++|.+..++++.+..+ +|+.|
T Consensus 127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L 205 (570)
T 2z63_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKL 205 (570)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEE
T ss_pred cEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeE
Confidence 999999885544 356 68899999999999998887643 47777777 778888877766665544433 45555
Q ss_pred EeecCCchh---------------------------------------------------------cccHHHHh------
Q 042574 645 KLSFGNEAL---------------------------------------------------------RETVEEAA------ 661 (929)
Q Consensus 645 ~l~~~~~~~---------------------------------------------------------~~~~~~l~------ 661 (929)
+++.+.... ......+.
T Consensus 206 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~ 285 (570)
T 2z63_A 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285 (570)
T ss_dssp EEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCS
T ss_pred ecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCccc
Confidence 444321000 00000111
Q ss_pred -------------------------------------cccccccEeEEEecccccchhcccccCCCCceeEEEEeccccc
Q 042574 662 -------------------------------------RLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRM 704 (929)
Q Consensus 662 -------------------------------------~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~ 704 (929)
.+. +|+.|.+........ ......+.++.+.+..+....
T Consensus 286 ~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~-~L~~L~l~~n~~~~~---~~~~~~~~L~~L~l~~n~l~~ 361 (570)
T 2z63_A 286 SFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK-SLKRLTFTSNKGGNA---FSEVDLPSLEFLDLSRNGLSF 361 (570)
T ss_dssp EEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCS-SCCEEEEESCBSCCB---CCCCBCTTCCEEECCSSCCBE
T ss_pred EEEecCccchhhhhhhccCCccEEeeccCcccccCccccc-ccCEEeCcCCccccc---cccccCCCCCEEeCcCCccCc
Confidence 122 333333332221111 011233466666655444332
Q ss_pred c---cccccCcCCCceeEeecccccCCCCcccCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCC
Q 042574 705 G---AFMITGLELPKSVILNNYKICRGEEPIVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCH 781 (929)
Q Consensus 705 ~---~~~~~~~~~~~~l~L~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~ 781 (929)
. .......+.++.+.+.++.+......+..+++|+.|.+.++.-..... ...+..++ +|+.|++++|.
T Consensus 362 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~~l~-~L~~L~l~~n~ 432 (570)
T 2z63_A 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE--------FSVFLSLR-NLIYLDISHTH 432 (570)
T ss_dssp EEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTT--------SCTTTTCT-TCCEEECTTSC
T ss_pred cccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccc--------hhhhhcCC-CCCEEeCcCCc
Confidence 2 122233566777887776655544446678899999988865222110 12345677 99999999985
Q ss_pred CccccchhchhhhcCCccEEEEecCcchh-hhhccCcchhhhhhccccccccccCCCcceeecccccccccc-cccCccc
Q 042574 782 NLKNLFSLWLLPALQNLEVLKVYGCDSIK-EIIAVEDEETEKELATNTIINTVTLPRLKKLRFYFLREFKRF-CSNNGVL 859 (929)
Q Consensus 782 ~l~~l~~~~~l~~L~~L~~L~i~~c~~l~-~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i-~~~~~~~ 859 (929)
- ...++ ..+..+++|++|++++|.-.. .++ .....+++|+.|++++|. +..+ +. ...
T Consensus 433 l-~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~p----------------~~~~~l~~L~~L~l~~n~-l~~~~~~--~~~ 491 (570)
T 2z63_A 433 T-RVAFN-GIFNGLSSLEVLKMAGNSFQENFLP----------------DIFTELRNLTFLDLSQCQ-LEQLSPT--AFN 491 (570)
T ss_dssp C-EECCT-TTTTTCTTCCEEECTTCEEGGGEEC----------------SCCTTCTTCCEEECTTSC-CCEECTT--TTT
T ss_pred c-cccch-hhhhcCCcCcEEECcCCcCccccch----------------hhhhcccCCCEEECCCCc-cccCChh--hhh
Confidence 4 33322 346788999999999985321 121 123368999999999984 5555 33 456
Q ss_pred cCCCccEEEEeccCCCccccC
Q 042574 860 VCNSLQEIKVRGCPKLKRLSL 880 (929)
Q Consensus 860 ~~p~L~~L~I~~C~~L~~lP~ 880 (929)
.+++|++|++++| +++.+|.
T Consensus 492 ~l~~L~~L~l~~n-~l~~~~~ 511 (570)
T 2z63_A 492 SLSSLQVLNMASN-QLKSVPD 511 (570)
T ss_dssp TCTTCCEEECCSS-CCSCCCT
T ss_pred cccCCCEEeCCCC-cCCCCCH
Confidence 7899999999999 5887765
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=2.7e-19 Score=214.25 Aligned_cols=153 Identities=24% Similarity=0.267 Sum_probs=132.6
Q ss_pred EEcCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCc
Q 042574 480 VKAGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIE 559 (929)
Q Consensus 480 ~~~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 559 (929)
.+.+.+++++|.. .+.++++|++++|.++.+++..|.++++|++|++++|. +..+++..|.++++|++|+|++|.++
T Consensus 37 ~c~~~~l~~vP~~--lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 37 QCMELNFYKIPDN--LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp ECTTSCCSSCCSS--SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred ECCCCCcCccCCC--CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCcCC
Confidence 3456678899975 46789999999999999998888899999999999997 78888887899999999999999999
Q ss_pred ccCc-ccccccccceeecccccccccCc--cccccCCCCEEEccCCCCcc--ccccccCCCCCCEEEccCCCCccCCCCc
Q 042574 560 VLPS-SVSNLTNLRSLLLRWCRRLKRVP--SVAKLLALQYLDLERTWIEE--VPEGMEMLENLSHLYLSSPPLKKFPTGI 634 (929)
Q Consensus 560 ~lp~-~i~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~ 634 (929)
.+|. .+.++++|++|++++|. ++.+| .++++++|++|++++|.+.. +|..+..+++|++|++++|.++.+++..
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 9986 47999999999999985 45555 59999999999999998874 5677899999999999999888776554
Q ss_pred cC
Q 042574 635 LP 636 (929)
Q Consensus 635 l~ 636 (929)
+.
T Consensus 193 l~ 194 (635)
T 4g8a_A 193 LR 194 (635)
T ss_dssp GH
T ss_pred cc
Confidence 43
No 35
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.81 E-value=8.6e-19 Score=211.49 Aligned_cols=160 Identities=23% Similarity=0.263 Sum_probs=118.4
Q ss_pred ccccCCC-cccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccC-
Q 042574 485 RLLKFPG-EQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLP- 562 (929)
Q Consensus 485 ~l~~~p~-~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp- 562 (929)
.+..++. .....+++++|++++|.+..+++..+.++++|++|++++|. +..+|...|.++++|++|++++|.++.+|
T Consensus 36 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~ 114 (680)
T 1ziw_A 36 QLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114 (680)
T ss_dssp CCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCS
T ss_pred CCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCCccCccCh
Confidence 3444443 24456788888888888888777667788888899988886 66777766688888899999888888775
Q ss_pred cccccccccceeecccccccccCc-cccccCCCCEEEccCCCCcccccc-c--cCCCCCCEEEccCCCCccCCCCccCCC
Q 042574 563 SSVSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIEEVPEG-M--EMLENLSHLYLSSPPLKKFPTGILPRL 638 (929)
Q Consensus 563 ~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~~-i--~~l~~L~~L~l~~~~~~~~~~~~l~~l 638 (929)
..++++++|++|++++|......| .++++++|++|++++|.++.++.. + ..+++|++|++++|.++.+++..+..+
T Consensus 115 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 194 (680)
T 1ziw_A 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAI 194 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGS
T ss_pred hHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhh
Confidence 568888888888888886555555 578888888888888888876553 2 345788888888888877776655555
Q ss_pred CCccEEE
Q 042574 639 RNLYKLK 645 (929)
Q Consensus 639 ~~L~~L~ 645 (929)
.+|+.|+
T Consensus 195 ~~L~~L~ 201 (680)
T 1ziw_A 195 GRLFGLF 201 (680)
T ss_dssp SEECEEE
T ss_pred hhhhhhh
Confidence 4444433
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=9.3e-19 Score=204.05 Aligned_cols=142 Identities=22% Similarity=0.259 Sum_probs=123.2
Q ss_pred cEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCccc-Ccccccccccceeeccc
Q 042574 500 ERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVL-PSSVSNLTNLRSLLLRW 578 (929)
Q Consensus 500 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~ 578 (929)
+++++++|.+..+|..++ ++|++|++++|. +..++...|.++++|++|++++|.++.+ |..++++++|++|++++
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccccccccc---ccccEEECCCCc-ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 579999999999997664 899999999998 6677766679999999999999999976 77899999999999999
Q ss_pred ccccccCccccccCCCCEEEccCCCCcc--ccccccCCCCCCEEEccCCCCccCCCCccCCCCCc--cEEEeecCC
Q 042574 579 CRRLKRVPSVAKLLALQYLDLERTWIEE--VPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNL--YKLKLSFGN 650 (929)
Q Consensus 579 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~ 650 (929)
| .++.+|.. .+++|++|++++|.+.. +|..++++++|++|++++|.++.. .+..+++| ++|+++.|.
T Consensus 79 N-~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 79 N-KLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---SVLPIAHLNISKVLLVLGE 149 (520)
T ss_dssp S-CCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---GGGGGTTSCEEEEEEEECT
T ss_pred C-ceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---hccccccceeeEEEeeccc
Confidence 8 45577755 89999999999999986 567899999999999999998762 35677777 999999775
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.80 E-value=4.2e-19 Score=201.83 Aligned_cols=310 Identities=16% Similarity=0.192 Sum_probs=219.7
Q ss_pred CCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceeecccccccccCccccccCCCCEE
Q 042574 518 PHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLRWCRRLKRVPSVAKLLALQYL 597 (929)
Q Consensus 518 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L 597 (929)
..+++|++|++++|. +..+| . +..+++|++|++++|.++.+| ++.+++|++|++++|. +..+| ++++++|++|
T Consensus 39 ~~l~~L~~L~Ls~n~-l~~~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~-~~~l~~L~~L 111 (457)
T 3bz5_A 39 EQLATLTSLDCHNSS-ITDMT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD-VTPLTKLTYL 111 (457)
T ss_dssp HHHTTCCEEECCSSC-CCCCT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC-CTTCTTCCEE
T ss_pred hHcCCCCEEEccCCC-cccCh-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee-cCCCCcCCEE
Confidence 467899999999997 66677 3 589999999999999999886 8999999999999985 45555 8899999999
Q ss_pred EccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCCchhcccHHHHhcccccccEeEEEeccc
Q 042574 598 DLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDGLDSFEGHFSEL 677 (929)
Q Consensus 598 ~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~~l 677 (929)
++++|.++.+| ++++++|++|++++|.++.++ ++++++|++|+++.|...... .+..+. +|+.|.+....+
T Consensus 112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~-~L~~L~ls~n~l 182 (457)
T 3bz5_A 112 NCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQT-QLTTLDCSFNKI 182 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTCT-TCCEEECCSSCC
T ss_pred ECCCCcCCeec--CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc---ccccCC-cCCEEECCCCcc
Confidence 99999999986 889999999999999998874 689999999999977433222 245566 888888766555
Q ss_pred ccchhcccccCCCCceeEEEEecccccccccccCcCCCceeEeecccccCCCCcccCcccccceeeecccCcccccccCc
Q 042574 678 KDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMITGLELPKSVILNNYKICRGEEPIVLPEDVQFLRMFEVSDVASLNDVLP 757 (929)
Q Consensus 678 ~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~L~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~l~~~~~ 757 (929)
..++. ...+.++.+.+....+... .+..+++|+.|.+.++.- ..
T Consensus 183 ~~l~l---------------------------~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l-~~------ 226 (457)
T 3bz5_A 183 TELDV---------------------------SQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKL-TE------ 226 (457)
T ss_dssp CCCCC---------------------------TTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCC-SC------
T ss_pred ceecc---------------------------ccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcc-cc------
Confidence 44320 0122344455544444332 355677888888887742 11
Q ss_pred cccCcccccccccceeEEEEecCCCccccchhchhhhcCCccEEEEecCcchhhhhccCcchhhhhhccccccccccCCC
Q 042574 758 REQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDSIKEIIAVEDEETEKELATNTIINTVTLPR 837 (929)
Q Consensus 758 ~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~ 837 (929)
++ ++.++ +|+.|+++++ .++.++ . ..+++|+.|+++++ .++.+.-..-... .......+++
T Consensus 227 ----ip-~~~l~-~L~~L~l~~N-~l~~~~-~---~~l~~L~~L~l~~n-~L~~L~l~~n~~~-------~~~~~~~l~~ 287 (457)
T 3bz5_A 227 ----ID-VTPLT-QLTYFDCSVN-PLTELD-V---STLSKLTTLHCIQT-DLLEIDLTHNTQL-------IYFQAEGCRK 287 (457)
T ss_dssp ----CC-CTTCT-TCSEEECCSS-CCSCCC-C---TTCTTCCEEECTTC-CCSCCCCTTCTTC-------CEEECTTCTT
T ss_pred ----cC-ccccC-CCCEEEeeCC-cCCCcC-H---HHCCCCCEEeccCC-CCCEEECCCCccC-------Cccccccccc
Confidence 22 45677 9999999996 566654 2 34556666655442 3333211100000 0011235799
Q ss_pred cceeecccccccccccccCccccCCCccEEEEeccCCCccccCCCCccCCCCCCCCCCcceEechh
Q 042574 838 LKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCPKLKRLSLSLPLLDNGQPSPPPALEVIEIEK 903 (929)
Q Consensus 838 L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~~L~~lP~~l~~l~~~~~~~~~~L~~i~~~~ 903 (929)
|+.|++++|+.+..++. .+++|+.|++++|++|+.|...--.++.+.+..|++|+.+....
T Consensus 288 L~~L~Ls~n~~l~~l~~-----~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~l~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 288 IKELDVTHNTQLYLLDC-----QAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVN 348 (457)
T ss_dssp CCCCCCTTCTTCCEEEC-----TTCCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCSEEECCS
T ss_pred CCEEECCCCcccceecc-----CCCcceEechhhcccCCEEECCCCcccccccccCCcCcEEECCC
Confidence 99999999998888875 35678888888888888887655556666677788888886543
No 38
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=2.6e-19 Score=194.60 Aligned_cols=150 Identities=27% Similarity=0.457 Sum_probs=134.3
Q ss_pred ccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceeec
Q 042574 497 ENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLL 576 (929)
Q Consensus 497 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l 576 (929)
.+++.|++++|.+..+|..++ .+++|++|++++|. +..+|..+ +++++|++|++++|.++.+|..++.+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~-~l~~L~~L~L~~n~-l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAF-RLSHLQHMTIDAAG-LMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGG-GGTTCSEEEEESSC-CCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCchhcChhhh-hCCCCCEEECCCCC-ccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 468999999999999998766 69999999999998 55888765 7899999999999999999999999999999999
Q ss_pred ccccccccCc-ccc---------ccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEe
Q 042574 577 RWCRRLKRVP-SVA---------KLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKL 646 (929)
Q Consensus 577 ~~~~~~~~~~-~~~---------~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 646 (929)
++|.....+| .++ .+++|++|++++|.++.+|..+.++++|++|++++|.++.+|.. +.++++|++|++
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~-l~~l~~L~~L~L 236 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLPKLEELDL 236 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG-GGGCTTCCEEEC
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh-hccCCCCCEEEC
Confidence 9998888888 454 49999999999999999999999999999999999999988775 789999999998
Q ss_pred ecCC
Q 042574 647 SFGN 650 (929)
Q Consensus 647 ~~~~ 650 (929)
++|.
T Consensus 237 s~n~ 240 (328)
T 4fcg_A 237 RGCT 240 (328)
T ss_dssp TTCT
T ss_pred cCCc
Confidence 8653
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.80 E-value=8.3e-19 Score=202.01 Aligned_cols=285 Identities=20% Similarity=0.160 Sum_probs=201.1
Q ss_pred cccccCC-CcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCccc-
Q 042574 484 LRLLKFP-GEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVL- 561 (929)
Q Consensus 484 ~~l~~~p-~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l- 561 (929)
..+..++ ......++++.|++++|.+..+++..+.++++|++|++++|. +..+|...|.++++|++|+|++|.+..+
T Consensus 42 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~ 120 (477)
T 2id5_A 42 NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILL 120 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEEC
T ss_pred CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCC
Confidence 3344443 344556789999999999998877777899999999999997 7788887778999999999999999865
Q ss_pred CcccccccccceeecccccccccCc-cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCccCCCCccCCCC
Q 042574 562 PSSVSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLR 639 (929)
Q Consensus 562 p~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 639 (929)
|..+..+++|++|++++|......+ .+..+++|++|++++|.++.+|.. +.++++|+.|++++|.+..++...+.+++
T Consensus 121 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 200 (477)
T 2id5_A 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200 (477)
T ss_dssp TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCT
T ss_pred hhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCc
Confidence 6678999999999999986554445 699999999999999999988865 88999999999999999999888899999
Q ss_pred CccEEEeecCCchhcccHHHHhcccccccEeEEEecccccchhcccccCCCCceeEEEEecccccccccccCcCCCceeE
Q 042574 640 NLYKLKLSFGNEALRETVEEAARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMITGLELPKSVI 719 (929)
Q Consensus 640 ~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~ 719 (929)
+|+.|+++.+....... ....... +|+.|.+.
T Consensus 201 ~L~~L~l~~~~~~~~~~-~~~~~~~-~L~~L~l~---------------------------------------------- 232 (477)
T 2id5_A 201 RLKVLEISHWPYLDTMT-PNCLYGL-NLTSLSIT---------------------------------------------- 232 (477)
T ss_dssp TCCEEEEECCTTCCEEC-TTTTTTC-CCSEEEEE----------------------------------------------
T ss_pred ccceeeCCCCccccccC-cccccCc-cccEEECc----------------------------------------------
Confidence 99999999664211100 0000111 23333322
Q ss_pred eecccccCCC-CcccCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchhhhcCCc
Q 042574 720 LNNYKICRGE-EPIVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNL 798 (929)
Q Consensus 720 L~~~~~~~~~-~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L 798 (929)
++.+.... ..+..+++|+.|.+.++.- ..+. ...+..++ +|+.|+|+++ .++.+++ ..+..+++|
T Consensus 233 --~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~--------~~~~~~l~-~L~~L~L~~n-~l~~~~~-~~~~~l~~L 298 (477)
T 2id5_A 233 --HCNLTAVPYLAVRHLVYLRFLNLSYNPI-STIE--------GSMLHELL-RLQEIQLVGG-QLAVVEP-YAFRGLNYL 298 (477)
T ss_dssp --SSCCCSCCHHHHTTCTTCCEEECCSSCC-CEEC--------TTSCTTCT-TCCEEECCSS-CCSEECT-TTBTTCTTC
T ss_pred --CCcccccCHHHhcCccccCeeECCCCcC-CccC--------hhhccccc-cCCEEECCCC-ccceECH-HHhcCcccC
Confidence 22221111 1234456777777776642 2111 12234566 8888888885 4555433 245677788
Q ss_pred cEEEEecCcchhhhhccCcchhhhhhccccccccccCCCcceeeccccc
Q 042574 799 EVLKVYGCDSIKEIIAVEDEETEKELATNTIINTVTLPRLKKLRFYFLR 847 (929)
Q Consensus 799 ~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 847 (929)
+.|+++++ .++.++. .....+++|+.|+|++++
T Consensus 299 ~~L~L~~N-~l~~~~~---------------~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 299 RVLNVSGN-QLTTLEE---------------SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CEEECCSS-CCSCCCG---------------GGBSCGGGCCEEECCSSC
T ss_pred CEEECCCC-cCceeCH---------------hHcCCCcccCEEEccCCC
Confidence 88888875 4544421 112246788888887765
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=1.6e-18 Score=203.89 Aligned_cols=144 Identities=21% Similarity=0.269 Sum_probs=121.9
Q ss_pred cccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCccc-Ccccccccccceeec
Q 042574 498 NLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVL-PSSVSNLTNLRSLLL 576 (929)
Q Consensus 498 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l 576 (929)
..+++++++|.+..+|..+. ++|++|++++|. +..++...|.++++|++|++++|.++.+ |..+.++++|++|++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP---PRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC---TTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCCCccCCCCCC---CCcCEEECCCCC-ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 45889999999999997654 799999999998 6777766679999999999999999977 677999999999999
Q ss_pred ccccccccCccccccCCCCEEEccCCCCcccc--ccccCCCCCCEEEccCCCCccCCCCccCCCCCc--cEEEeecCC
Q 042574 577 RWCRRLKRVPSVAKLLALQYLDLERTWIEEVP--EGMEMLENLSHLYLSSPPLKKFPTGILPRLRNL--YKLKLSFGN 650 (929)
Q Consensus 577 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~ 650 (929)
++|. ++.+|.. .+++|++|++++|.+..+| ..++++++|++|++++|.+.... +..+++| ++|+++.|.
T Consensus 108 s~N~-l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 108 SHNR-LQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp TTSC-CCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESS
T ss_pred CCCc-CCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeeccc
Confidence 9985 5677744 8999999999999999765 67999999999999999887643 3444555 999998764
No 41
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.79 E-value=9.7e-19 Score=200.26 Aligned_cols=332 Identities=16% Similarity=0.156 Sum_probs=212.8
Q ss_pred ccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCc-cc-Ccccccccccceeec
Q 042574 499 LERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIE-VL-PSSVSNLTNLRSLLL 576 (929)
Q Consensus 499 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~l-p~~i~~l~~L~~L~l 576 (929)
-+.++.+++.+..+|. + .++|++|++++|. +..++...|.++++|++|++++|.+. .+ |..+.++++|++|++
T Consensus 12 ~~~~~c~~~~l~~lp~-l---~~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLHQVPE-L---PAHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCSSCCC-C---CTTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCcccCCC-C---CCccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 3457777788888886 2 3789999999997 56665555689999999999999986 55 567899999999999
Q ss_pred ccccccccCc-cccccCCCCEEEccCCCCcc-cccc--ccCCCCCCEEEccCCCCccCCCCc-cCCCCCccEEEeecCCc
Q 042574 577 RWCRRLKRVP-SVAKLLALQYLDLERTWIEE-VPEG--MEMLENLSHLYLSSPPLKKFPTGI-LPRLRNLYKLKLSFGNE 651 (929)
Q Consensus 577 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~-lp~~--i~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~ 651 (929)
++|......| .++++++|++|++++|.++. +|.. +.++++|++|++++|.+..+.+.. +.++++|++|++++|..
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 9987655556 79999999999999999985 4444 889999999999999998885553 78999999999997753
Q ss_pred hhcccHHHHhccc-ccccEeEEEecccccchhccc-------ccCCCCceeEEEEecccccccccccCcCCCceeEeecc
Q 042574 652 ALRETVEEAARLS-DGLDSFEGHFSELKDFNIYVK-------STDGRGSKHYCLLLSAYRMGAFMITGLELPKSVILNNY 723 (929)
Q Consensus 652 ~~~~~~~~l~~l~-~~L~~L~~~~~~l~~l~~~~~-------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~L~~~ 723 (929)
.. .....+..+. .+|+.+.+....+..+..... ......++.+.+..+.......... .
T Consensus 167 ~~-~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~----------- 233 (455)
T 3v47_A 167 KS-ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF-F----------- 233 (455)
T ss_dssp SC-CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHH-H-----------
T ss_pred cc-cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhh-h-----------
Confidence 21 1222233331 156666655444443322110 1112345555444333221110000 0
Q ss_pred cccCCCCcccCcccccceeeecccCcccccccC--cc--ccCcccccccccceeEEEEecCCCccccchhchhhhcCCcc
Q 042574 724 KICRGEEPIVLPEDVQFLRMFEVSDVASLNDVL--PR--EQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLE 799 (929)
Q Consensus 724 ~~~~~~~~~~~~~~L~~L~i~~~~~~~~l~~~~--~~--~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~ 799 (929)
.....++|+.|.+.++.......... .. ...+.. -..+ +|+.|++++|. ++.+++ ..+..+++|+
T Consensus 234 -------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~L~~L~l~~n~-l~~~~~-~~~~~l~~L~ 302 (455)
T 3v47_A 234 -------DAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG-LEAS-GVKTCDLSKSK-IFALLK-SVFSHFTDLE 302 (455)
T ss_dssp -------HHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGG-GTTS-CCCEEECCSSC-CCEECT-TTTTTCTTCC
T ss_pred -------ccccccceeeEeeccccccccccchhhhccCccccccc-cccc-CceEEEecCcc-ccccch-hhcccCCCCC
Confidence 00011234444444432221100000 00 000100 1234 89999999974 444433 3467889999
Q ss_pred EEEEecCcchhhhhccCcchhhhhhccccccccccCCCcceeecccccccccccccCccccCCCccEEEEeccCCCccc
Q 042574 800 VLKVYGCDSIKEIIAVEDEETEKELATNTIINTVTLPRLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCPKLKRL 878 (929)
Q Consensus 800 ~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~~L~~l 878 (929)
+|++++|. ++.+.. .....+++|+.|+++++ .+..+.. .....+++|++|++++|. ++.+
T Consensus 303 ~L~Ls~n~-l~~~~~---------------~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~ 362 (455)
T 3v47_A 303 QLTLAQNE-INKIDD---------------NAFWGLTHLLKLNLSQN-FLGSIDS-RMFENLDKLEVLDLSYNH-IRAL 362 (455)
T ss_dssp EEECTTSC-CCEECT---------------TTTTTCTTCCEEECCSS-CCCEECG-GGGTTCTTCCEEECCSSC-CCEE
T ss_pred EEECCCCc-ccccCh---------------hHhcCcccCCEEECCCC-ccCCcCh-hHhcCcccCCEEECCCCc-cccc
Confidence 99999973 443321 12235899999999997 4566643 144568999999999984 6665
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=9.1e-19 Score=190.31 Aligned_cols=239 Identities=22% Similarity=0.303 Sum_probs=153.8
Q ss_pred cCCCCcEEEecCCCCcccCcccccccccceeecccccccccCc-cccccCCCCEEEccCCCCccccccccCCCCCCEEEc
Q 042574 544 HMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYL 622 (929)
Q Consensus 544 ~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l 622 (929)
...++++|++++|.++.+|..++.+++|++|++++|... .+| .++++++|++|++++|.++.+|..+.++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 356788888888888888888888888888888877443 666 577788888888888877777777778888888888
Q ss_pred cCCCC-ccCCCCccCCCCCccEEEeecCCchhcccHHHHhcccccccEeEEEecccccchhcccccCCCCceeEEEEecc
Q 042574 623 SSPPL-KKFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSA 701 (929)
Q Consensus 623 ~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~ 701 (929)
++|++ ..+|.. +.. ..+.
T Consensus 158 ~~n~~~~~~p~~-~~~------~~~~------------------------------------------------------ 176 (328)
T 4fcg_A 158 RACPELTELPEP-LAS------TDAS------------------------------------------------------ 176 (328)
T ss_dssp EEETTCCCCCSC-SEE------EC-C------------------------------------------------------
T ss_pred CCCCCccccChh-Hhh------ccch------------------------------------------------------
Confidence 77653 333332 111 0000
Q ss_pred cccccccccCcCCCceeEeecccccCCCCcccCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCC
Q 042574 702 YRMGAFMITGLELPKSVILNNYKICRGEEPIVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCH 781 (929)
Q Consensus 702 ~~~~~~~~~~~~~~~~l~L~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~ 781 (929)
..+..+++|+.|.+.++. +..+ ...++.++ +|++|++++|
T Consensus 177 ----------------------------~~~~~l~~L~~L~L~~n~-l~~l---------p~~l~~l~-~L~~L~L~~N- 216 (328)
T 4fcg_A 177 ----------------------------GEHQGLVNLQSLRLEWTG-IRSL---------PASIANLQ-NLKSLKIRNS- 216 (328)
T ss_dssp ----------------------------CCEEESTTCCEEEEEEEC-CCCC---------CGGGGGCT-TCCEEEEESS-
T ss_pred ----------------------------hhhccCCCCCEEECcCCC-cCcc---------hHhhcCCC-CCCEEEccCC-
Confidence 000112233333333331 1111 11224455 7888888885
Q ss_pred CccccchhchhhhcCCccEEEEecCcchhhhhccCcchhhhhhccccccccccCCCcceeecccccccccccccCccccC
Q 042574 782 NLKNLFSLWLLPALQNLEVLKVYGCDSIKEIIAVEDEETEKELATNTIINTVTLPRLKKLRFYFLREFKRFCSNNGVLVC 861 (929)
Q Consensus 782 ~l~~l~~~~~l~~L~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~~~ 861 (929)
.++.+|+ .+..+++|++|++++|.....++. ....+++|+.|++++|..+..++. ....+
T Consensus 217 ~l~~l~~--~l~~l~~L~~L~Ls~n~~~~~~p~----------------~~~~l~~L~~L~L~~n~~~~~~p~--~~~~l 276 (328)
T 4fcg_A 217 PLSALGP--AIHHLPKLEELDLRGCTALRNYPP----------------IFGGRAPLKRLILKDCSNLLTLPL--DIHRL 276 (328)
T ss_dssp CCCCCCG--GGGGCTTCCEEECTTCTTCCBCCC----------------CTTCCCCCCEEECTTCTTCCBCCT--TGGGC
T ss_pred CCCcCch--hhccCCCCCEEECcCCcchhhhHH----------------HhcCCCCCCEEECCCCCchhhcch--hhhcC
Confidence 4555554 466788888888888765554431 223588899999999888888876 56778
Q ss_pred CCccEEEEeccCCCccccCCCCccCCCCCCCCCCcceEechhhhhhhcccC
Q 042574 862 NSLQEIKVRGCPKLKRLSLSLPLLDNGQPSPPPALEVIEIEKELWESLEWD 912 (929)
Q Consensus 862 p~L~~L~I~~C~~L~~lP~~l~~l~~~~~~~~~~L~~i~~~~~~w~~l~w~ 912 (929)
++|++|++++|+.+..+|..+.++ ++|+.+..+......+.+.
T Consensus 277 ~~L~~L~L~~n~~~~~iP~~l~~L--------~~L~~l~l~~~~~~~l~~~ 319 (328)
T 4fcg_A 277 TQLEKLDLRGCVNLSRLPSLIAQL--------PANCIILVPPHLQAQLDQH 319 (328)
T ss_dssp TTCCEEECTTCTTCCCCCGGGGGS--------CTTCEEECCGGGSCC----
T ss_pred CCCCEEeCCCCCchhhccHHHhhc--------cCceEEeCCHHHHHHHhhh
Confidence 899999999999999999877665 5566666555555554443
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=1.9e-18 Score=188.68 Aligned_cols=144 Identities=25% Similarity=0.376 Sum_probs=93.6
Q ss_pred cccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCccc-Ccccccccccceeec
Q 042574 498 NLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVL-PSSVSNLTNLRSLLL 576 (929)
Q Consensus 498 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l 576 (929)
+++.++++++.+..+|..++ ++|++|++++|. +..++...|.++++|++|++++|.++.+ |..++.+++|++|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~---~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS---PDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC---TTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccCCCCC---CCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 56777777777777765443 567777777775 5555544456777777777777777755 556677777777777
Q ss_pred ccccccccCc-cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCcc--CCCCccCCCCCccEEEeecC
Q 042574 577 RWCRRLKRVP-SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKK--FPTGILPRLRNLYKLKLSFG 649 (929)
Q Consensus 577 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~ 649 (929)
++|. +..+| .+. ++|++|++++|.+..+|.. +.++++|++|++++|.++. ..+..+..+ +|++|++++|
T Consensus 110 ~~n~-l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n 182 (332)
T 2ft3_A 110 SKNH-LVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA 182 (332)
T ss_dssp CSSC-CCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred CCCc-CCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence 7763 34455 333 6777777777777766654 6667777777777776643 444445555 6666666654
No 44
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=7.9e-18 Score=191.16 Aligned_cols=315 Identities=19% Similarity=0.205 Sum_probs=162.2
Q ss_pred CcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccC
Q 042574 483 GLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLP 562 (929)
Q Consensus 483 ~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp 562 (929)
+..+..+|. .+++++.|++++|.+..+|. .+++|++|++++|. +..++. ..++|++|++++|.++.+|
T Consensus 80 ~~~l~~lp~---~~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~-l~~l~~----~~~~L~~L~L~~n~l~~lp 147 (454)
T 1jl5_A 80 NLGLSSLPE---LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNN-LKALSD----LPPLLEYLGVSNNQLEKLP 147 (454)
T ss_dssp TSCCSCCCS---CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSC-CSCCCS----CCTTCCEEECCSSCCSSCC
T ss_pred CCccccCCC---CcCCCCEEEccCCcCCcccc----ccCCCcEEECCCCc-cCcccC----CCCCCCEEECcCCCCCCCc
Confidence 334455554 24567777777777776653 23667777777775 444442 1256777777777777776
Q ss_pred cccccccccceeecccccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCcc
Q 042574 563 SSVSNLTNLRSLLLRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLY 642 (929)
Q Consensus 563 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 642 (929)
.++.+++|++|++++|. ++.+|.. ..+|++|++++|.++.+| .++++++|++|++++|.++.+|.. .++|+
T Consensus 148 -~~~~l~~L~~L~l~~N~-l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~ 218 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNS-LKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL----PLSLE 218 (454)
T ss_dssp -CCTTCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC----CTTCC
T ss_pred -ccCCCCCCCEEECCCCc-CcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC----cCccc
Confidence 47777777777777763 3445532 246777777777777766 567777777777777776665542 24677
Q ss_pred EEEeecCCchhcccHHHHhcccccccEeEEEecccccchhcccccCCCCceeEEEEecccccccccccCcCCCceeEeec
Q 042574 643 KLKLSFGNEALRETVEEAARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMITGLELPKSVILNN 722 (929)
Q Consensus 643 ~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~L~~ 722 (929)
+|++++|... .+..+..+. +|+.|.+....+..++.. ...++.+.+..+....... ....++.+.+++
T Consensus 219 ~L~l~~n~l~---~lp~~~~l~-~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~N~l~~l~~---~~~~L~~L~ls~ 286 (454)
T 1jl5_A 219 SIVAGNNILE---ELPELQNLP-FLTTIYADNNLLKTLPDL-----PPSLEALNVRDNYLTDLPE---LPQSLTFLDVSE 286 (454)
T ss_dssp EEECCSSCCS---SCCCCTTCT-TCCEEECCSSCCSSCCSC-----CTTCCEEECCSSCCSCCCC---CCTTCCEEECCS
T ss_pred EEECcCCcCC---cccccCCCC-CCCEEECCCCcCCccccc-----ccccCEEECCCCcccccCc---ccCcCCEEECcC
Confidence 7777655322 111244555 666666654444332211 1233333332222211100 012244444444
Q ss_pred ccccCCCCcccCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchhhhcCCccEEE
Q 042574 723 YKICRGEEPIVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLK 802 (929)
Q Consensus 723 ~~~~~~~~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~ 802 (929)
..+.+.. ..+++|+.|.+.++. +..+..+|++|+.|+++++ .++.+|. .+++|++|+
T Consensus 287 N~l~~l~---~~~~~L~~L~l~~N~--------------l~~i~~~~~~L~~L~Ls~N-~l~~lp~-----~~~~L~~L~ 343 (454)
T 1jl5_A 287 NIFSGLS---ELPPNLYYLNASSNE--------------IRSLCDLPPSLEELNVSNN-KLIELPA-----LPPRLERLI 343 (454)
T ss_dssp SCCSEES---CCCTTCCEEECCSSC--------------CSEECCCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEE
T ss_pred CccCccc---CcCCcCCEEECcCCc--------------CCcccCCcCcCCEEECCCC-ccccccc-----cCCcCCEEE
Confidence 3322210 123456666665543 1112233347888888774 4555543 246788888
Q ss_pred EecCcchhhhhccCcchhhhhhccccccccccCCCcceeeccccccccc---ccccCccccC-------------CCccE
Q 042574 803 VYGCDSIKEIIAVEDEETEKELATNTIINTVTLPRLKKLRFYFLREFKR---FCSNNGVLVC-------------NSLQE 866 (929)
Q Consensus 803 i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~---i~~~~~~~~~-------------p~L~~ 866 (929)
+++| .++.++. .+++|+.|++++++ +.. ++. ....+ ++|+.
T Consensus 344 L~~N-~l~~lp~-------------------~l~~L~~L~L~~N~-l~~l~~ip~--~l~~L~~n~~~~~i~~~~~~L~~ 400 (454)
T 1jl5_A 344 ASFN-HLAEVPE-------------------LPQNLKQLHVEYNP-LREFPDIPE--SVEDLRMNSHLAEVPELPQNLKQ 400 (454)
T ss_dssp CCSS-CCSCCCC-------------------CCTTCCEEECCSSC-CSSCCCCCT--TCCEEECCC--------------
T ss_pred CCCC-ccccccc-------------------hhhhccEEECCCCC-CCcCCCChH--HHHhhhhcccccccccccCcCCE
Confidence 8775 3444321 36788888887764 333 332 22222 67888
Q ss_pred EEEeccCCCcc
Q 042574 867 IKVRGCPKLKR 877 (929)
Q Consensus 867 L~I~~C~~L~~ 877 (929)
|++++++ ++.
T Consensus 401 L~ls~N~-l~~ 410 (454)
T 1jl5_A 401 LHVETNP-LRE 410 (454)
T ss_dssp -----------
T ss_pred EECCCCc-CCc
Confidence 8888875 543
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=1.8e-17 Score=180.89 Aligned_cols=145 Identities=24% Similarity=0.368 Sum_probs=103.3
Q ss_pred cccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCccc-Ccccccccccceeec
Q 042574 498 NLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVL-PSSVSNLTNLRSLLL 576 (929)
Q Consensus 498 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l 576 (929)
+++.++++++.+..+|..+. +++++|++++|. +..++...|.++++|++|++++|.++.+ |..++.+++|++|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~---~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP---PDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC---TTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccccCccCC---CCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 56777777777777775443 577788888876 5666665557788888888888887765 667778888888888
Q ss_pred ccccccccCc-cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCcc--CCCCccCCCCCccEEEeecC
Q 042574 577 RWCRRLKRVP-SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKK--FPTGILPRLRNLYKLKLSFG 649 (929)
Q Consensus 577 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~ 649 (929)
++|. ++.+| .+. ++|++|++++|.+..++.. +.++++|++|++++|.+.. ..+..+.++++|++|+++.|
T Consensus 108 s~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 108 SKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp CSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred CCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence 8764 44555 333 6788888888877776654 6778888888888877653 44555677777887777755
No 46
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=1.4e-17 Score=194.96 Aligned_cols=131 Identities=20% Similarity=0.223 Sum_probs=85.2
Q ss_pred cccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceeecc
Q 042574 498 NLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLR 577 (929)
Q Consensus 498 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~ 577 (929)
+++.|++++|.+..+|..++ ++|++|++++|. +..+|. .+++|++|+|++|.++.+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~-l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP---AHITTLVIPDNN-LTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC---TTCSEEEECSCC-CSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChhhC---CCCcEEEecCCC-CCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 46667777777777665543 567777777775 555664 45677777777777777665 56677777777
Q ss_pred cccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecC
Q 042574 578 WCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFG 649 (929)
Q Consensus 578 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 649 (929)
+| .+..+|. .+++|++|++++|.++.+|.. +++|++|++++|.++.+|. .+.+|+.|++++|
T Consensus 110 ~N-~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N 171 (622)
T 3g06_A 110 SN-PLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA----LPSELCKLWAYNN 171 (622)
T ss_dssp SC-CCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS
T ss_pred CC-cCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCC
Confidence 65 3444444 556677777777777776653 3667777777777666653 2355666666654
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=2.4e-18 Score=185.90 Aligned_cols=250 Identities=19% Similarity=0.193 Sum_probs=171.8
Q ss_pred ccccEEEcccCCCCc---CCCCCCCCCCcccEEEccc-CCcCccCcHHHHccCCCCcEEEecCCCCc-ccCccccccccc
Q 042574 497 ENLERVSLMDNHIEE---IPSNMSPHCKILSTLLLQR-NGYLQRIPECFFMHMRGLKVLNLSHTNIE-VLPSSVSNLTNL 571 (929)
Q Consensus 497 ~~l~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L 571 (929)
.+++.|++++|.+.. +|.. +..+++|++|++++ |.....+|..+ .++++|++|++++|.++ .+|..+..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~-l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS-LANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG-GGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChh-HhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 367888888888773 5544 45788888888885 66555667664 78888888888888887 778888888888
Q ss_pred ceeecccccccccCc-cccccCCCCEEEccCCCCc-cccccccCCC-CCCEEEccCCCCccCCCCccCCCCCccEEEeec
Q 042574 572 RSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIE-EVPEGMEMLE-NLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSF 648 (929)
Q Consensus 572 ~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 648 (929)
++|++++|.....+| .+.++++|++|++++|.++ .+|..+..++ +|++|++++|.++...+..+..++ |+.|++++
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence 888888876655666 6888888888888888887 7777788887 888888888887755455567776 88888775
Q ss_pred CCchhcccHHHHhcccccccEeEEEecccccchhcccccCCCCceeEEEEecccccccccccCcCCCceeEeecccccCC
Q 042574 649 GNEALRETVEEAARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMITGLELPKSVILNNYKICRG 728 (929)
Q Consensus 649 ~~~~~~~~~~~l~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~L~~~~~~~~ 728 (929)
|. +... .
T Consensus 207 N~----------------l~~~---------~------------------------------------------------ 213 (313)
T 1ogq_A 207 NM----------------LEGD---------A------------------------------------------------ 213 (313)
T ss_dssp SE----------------EEEC---------C------------------------------------------------
T ss_pred Cc----------------ccCc---------C------------------------------------------------
Confidence 52 1000 0
Q ss_pred CCcccCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchhhhcCCccEEEEecCcc
Q 042574 729 EEPIVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDS 808 (929)
Q Consensus 729 ~~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~ 808 (929)
...+..+++|+.|.+.++.-... ++.+..++ +|++|++++|.--..+|. .+..+++|++|+++++.
T Consensus 214 ~~~~~~l~~L~~L~L~~N~l~~~----------~~~~~~l~-~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~Ls~N~- 279 (313)
T 1ogq_A 214 SVLFGSDKNTQKIHLAKNSLAFD----------LGKVGLSK-NLNGLDLRNNRIYGTLPQ--GLTQLKFLHSLNVSFNN- 279 (313)
T ss_dssp GGGCCTTSCCSEEECCSSEECCB----------GGGCCCCT-TCCEEECCSSCCEECCCG--GGGGCTTCCEEECCSSE-
T ss_pred CHHHhcCCCCCEEECCCCceeee----------cCcccccC-CCCEEECcCCcccCcCCh--HHhcCcCCCEEECcCCc-
Confidence 00122344566666655532111 22234456 999999999754334443 46788999999999874
Q ss_pred hh-hhhccCcchhhhhhccccccccccCCCcceeeccccccccccc
Q 042574 809 IK-EIIAVEDEETEKELATNTIINTVTLPRLKKLRFYFLREFKRFC 853 (929)
Q Consensus 809 l~-~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~ 853 (929)
++ .++. ...+++|+.|++.+++.+...+
T Consensus 280 l~~~ip~-----------------~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 280 LCGEIPQ-----------------GGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp EEEECCC-----------------STTGGGSCGGGTCSSSEEESTT
T ss_pred ccccCCC-----------------CccccccChHHhcCCCCccCCC
Confidence 43 3321 1358899999999988776543
No 48
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.75 E-value=6.4e-17 Score=199.11 Aligned_cols=242 Identities=14% Similarity=0.046 Sum_probs=116.1
Q ss_pred CCCCEEEccCCCCccCCCCccCCCCCccEEEeecCCchhcccHHHHhcccccccEeEEEecccccchhcccccCCCCcee
Q 042574 615 ENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGNEALRETVEEAARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKH 694 (929)
Q Consensus 615 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~ 694 (929)
++|++|++++|.+..+++..+.++++|+.|++++|... ......+..+. +|+.|.+....+...... .-...+.|+.
T Consensus 266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~ 342 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLD-NLQVLNLSYNLLGELYSS-NFYGLPKVAY 342 (844)
T ss_dssp SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC-EECTTTTTTCS-SCCEEEEESCCCSCCCSC-SCSSCTTCCE
T ss_pred CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC-CCChHHhcCCC-CCCEEECCCCCCCccCHH-HhcCCCCCCE
Confidence 56777777777777666666777777777777765422 11223345556 777777765554432111 0111234444
Q ss_pred EEEEecccccccc-cccCcCCCceeEeecccccCCCCcccCcccccceeeecccCcccccccCcc-------ccCc----
Q 042574 695 YCLLLSAYRMGAF-MITGLELPKSVILNNYKICRGEEPIVLPEDVQFLRMFEVSDVASLNDVLPR-------EQGL---- 762 (929)
Q Consensus 695 l~~~~~~~~~~~~-~~~~~~~~~~l~L~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~l~~~~~~-------~~~l---- 762 (929)
+.+..+....... ....++.++.+.+++..+.. +..+++|+.|.+.++.-. .++..... ...+
T Consensus 343 L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~----i~~~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~ 417 (844)
T 3j0a_A 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT----IHFIPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLD 417 (844)
T ss_dssp EECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC----CSSCCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSST
T ss_pred EECCCCCCCccChhhhcCCCCCCEEECCCCCCCc----ccCCCCcchhccCCCCcc-cccccccccceeecccCccccCc
Confidence 4444333322111 12223445555555544332 223555666666554311 11110000 0001
Q ss_pred --ccccccccceeEEEEecCCCccccchhchhhhcCCccEEEEecCcchhhhhccCcchhhhhhccccccccccCCCcce
Q 042574 763 --VNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDSIKEIIAVEDEETEKELATNTIINTVTLPRLKK 840 (929)
Q Consensus 763 --~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~ 840 (929)
..+..++ +|+.|+++++ .++.+++......+++|+.|+++++ .++.+...+. .......+++|+.
T Consensus 418 ~~~~~~~l~-~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~~~~~~----------~~~~~~~l~~L~~ 484 (844)
T 3j0a_A 418 ILYFLLRVP-HLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGEN-MLQLAWETEL----------CWDVFEGLSHLQV 484 (844)
T ss_dssp THHHHTTCT-TCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESC-CCSSSCCSCC----------CSSCSSCBCCEEC
T ss_pred hhhhhhcCC-ccceeeCCCC-cccccccccccccCCccccccCCCC-cccccccccc----------chhhhcCcccccE
Confidence 1123455 7777777774 3443333222334566777777664 2222111000 0011224567777
Q ss_pred eecccccccccccccCccccCCCccEEEEeccCCCccccC
Q 042574 841 LRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCPKLKRLSL 880 (929)
Q Consensus 841 L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~~L~~lP~ 880 (929)
|+|+++ +++.++. .....+++|+.|+++++ +|+.+|.
T Consensus 485 L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~l~~ 521 (844)
T 3j0a_A 485 LYLNHN-YLNSLPP-GVFSHLTALRGLSLNSN-RLTVLSH 521 (844)
T ss_dssp CCCCHH-HHTTCCT-TSSSSCCSCSEEEEESC-CCSSCCC
T ss_pred EECCCC-cccccCh-hHccchhhhheeECCCC-CCCccCh
Confidence 777665 4555543 12345667777777766 4666654
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=4.9e-17 Score=194.62 Aligned_cols=367 Identities=17% Similarity=0.140 Sum_probs=221.5
Q ss_pred cCcccccCCC-cccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcc
Q 042574 482 AGLRLLKFPG-EQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEV 560 (929)
Q Consensus 482 ~~~~l~~~p~-~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 560 (929)
.+..++.+|. .....+++++|++++|.+..+++..|.++++|++|++++|. +..+|...|.++++|++|++++|.++.
T Consensus 60 s~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N~l~~ 138 (635)
T 4g8a_A 60 SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLAS 138 (635)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEECTTSCCCC
T ss_pred eCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEECCCCcCCC
Confidence 3445566664 35567899999999999999998888899999999999997 888888888999999999999999998
Q ss_pred cCc-ccccccccceeecccccccc-cCc-cccccCCCCEEEccCCCCccccc-cccCCCCCC----EEEccCCCCccCCC
Q 042574 561 LPS-SVSNLTNLRSLLLRWCRRLK-RVP-SVAKLLALQYLDLERTWIEEVPE-GMEMLENLS----HLYLSSPPLKKFPT 632 (929)
Q Consensus 561 lp~-~i~~l~~L~~L~l~~~~~~~-~~~-~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~----~L~l~~~~~~~~~~ 632 (929)
+|. .++++++|++|++++|.... ..| .++.+++|++|++++|.++.++. .+..+.+++ .++++.|.+..+++
T Consensus 139 l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~ 218 (635)
T 4g8a_A 139 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 218 (635)
T ss_dssp STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECT
T ss_pred CChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCc
Confidence 875 48999999999999986433 345 68899999999999998876643 233322221 22222222211110
Q ss_pred C-------------------------------------------------------------------------------
Q 042574 633 G------------------------------------------------------------------------------- 633 (929)
Q Consensus 633 ~------------------------------------------------------------------------------- 633 (929)
+
T Consensus 219 ~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 298 (635)
T 4g8a_A 219 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGI 298 (635)
T ss_dssp TTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEEC
T ss_pred ccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccch
Confidence 0
Q ss_pred ------------------------ccCCCCCccEEEeecCCchhcc--cHH----------------HHhcccccccEeE
Q 042574 634 ------------------------ILPRLRNLYKLKLSFGNEALRE--TVE----------------EAARLSDGLDSFE 671 (929)
Q Consensus 634 ------------------------~l~~l~~L~~L~l~~~~~~~~~--~~~----------------~l~~l~~~L~~L~ 671 (929)
.+....+|+.|++..+...... .+. ....+. +|+.+.
T Consensus 299 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~-~L~~L~ 377 (635)
T 4g8a_A 299 IDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP-SLEFLD 377 (635)
T ss_dssp TTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCT-TCCEEE
T ss_pred hhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccc-ccccch
Confidence 0112234555555533211000 000 011233 455554
Q ss_pred EEecccccchhc-ccccCCCCceeEEEEecccccccccccCcCCCceeEeecccccCCC--CcccCcccccceeeecccC
Q 042574 672 GHFSELKDFNIY-VKSTDGRGSKHYCLLLSAYRMGAFMITGLELPKSVILNNYKICRGE--EPIVLPEDVQFLRMFEVSD 748 (929)
Q Consensus 672 ~~~~~l~~l~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~L~~~~~~~~~--~~~~~~~~L~~L~i~~~~~ 748 (929)
+....+...... .......++..+...................++.+.+......... ..+..+.++..+.+..+..
T Consensus 378 ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l 457 (635)
T 4g8a_A 378 LSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 457 (635)
T ss_dssp CCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCC
T ss_pred hhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccc
Confidence 433322211100 0011122344333322222222222222344555555443333222 2344556666666655432
Q ss_pred cccccccCccccCcccccccccceeEEEEecCCCccccchhchhhhcCCccEEEEecCcchhhhhccCcchhhhhhcccc
Q 042574 749 VASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDSIKEIIAVEDEETEKELATNT 828 (929)
Q Consensus 749 ~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~ 828 (929)
.... ......++ +|+.|+++++.....+++ ..+..+++|++|++++| .++.++.
T Consensus 458 ~~~~---------~~~~~~~~-~L~~L~Ls~N~~~~~~~~-~~~~~l~~L~~L~Ls~N-~L~~l~~-------------- 511 (635)
T 4g8a_A 458 RVAF---------NGIFNGLS-SLEVLKMAGNSFQENFLP-DIFTELRNLTFLDLSQC-QLEQLSP-------------- 511 (635)
T ss_dssp EECC---------TTTTTTCT-TCCEEECTTCEEGGGEEC-SCCTTCTTCCEEECTTS-CCCEECT--------------
T ss_pred cccc---------ccccccch-hhhhhhhhhcccccccCc-hhhhhccccCEEECCCC-ccCCcCh--------------
Confidence 2111 11123455 999999999876665433 34678899999999997 5665542
Q ss_pred ccccccCCCcceeecccccccccccccCccccCCCccEEEEeccCCCccccC
Q 042574 829 IINTVTLPRLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCPKLKRLSL 880 (929)
Q Consensus 829 ~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~~L~~lP~ 880 (929)
.....+++|+.|+|+++ +++.++. .....+++|++|+++++. ++.+|.
T Consensus 512 -~~f~~l~~L~~L~Ls~N-~l~~l~~-~~~~~l~~L~~L~Ls~N~-l~~~~~ 559 (635)
T 4g8a_A 512 -TAFNSLSSLQVLNMSHN-NFFSLDT-FPYKCLNSLQVLDYSLNH-IMTSKK 559 (635)
T ss_dssp -TTTTTCTTCCEEECTTS-CCCBCCC-GGGTTCTTCCEEECTTSC-CCBCCS
T ss_pred -HHHcCCCCCCEEECCCC-cCCCCCh-hHHhCCCCCCEEECCCCc-CCCCCH
Confidence 12336899999999986 5777754 134568999999999984 776654
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=1.8e-17 Score=182.73 Aligned_cols=191 Identities=23% Similarity=0.250 Sum_probs=140.6
Q ss_pred EcCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcc
Q 042574 481 KAGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEV 560 (929)
Q Consensus 481 ~~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 560 (929)
..+.+++++|.. ..+++++|++++|.+..++...+..+++|++|++++|. +..++...|.++++|++|++++|.++.
T Consensus 38 ~~~~~l~~iP~~--~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 114 (353)
T 2z80_A 38 GSSGSLNSIPSG--LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNYLSN 114 (353)
T ss_dssp CCSTTCSSCCTT--CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSS
T ss_pred CCCCCccccccc--ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCcCCc
Confidence 345566777764 34678888988888888877667788889999988886 556655556788889999998888888
Q ss_pred cCcc-cccccccceeecccccccccCc---cccccCCCCEEEccCC-CCcccc-ccccCCCCCCEEEccCCCCccCCCCc
Q 042574 561 LPSS-VSNLTNLRSLLLRWCRRLKRVP---SVAKLLALQYLDLERT-WIEEVP-EGMEMLENLSHLYLSSPPLKKFPTGI 634 (929)
Q Consensus 561 lp~~-i~~l~~L~~L~l~~~~~~~~~~---~~~~l~~L~~L~l~~~-~i~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~ 634 (929)
+|.. ++.+++|++|++++|.. ..+| .+.++++|++|++++| .+..++ ..+.++++|++|++++|.+..+++..
T Consensus 115 ~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 193 (353)
T 2z80_A 115 LSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193 (353)
T ss_dssp CCHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred CCHhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH
Confidence 8766 78888899999888743 4454 3778888899988888 577664 35788888888888888888776666
Q ss_pred cCCCCCccEEEeecCCchhcccHHHHhcccccccEeEEEeccc
Q 042574 635 LPRLRNLYKLKLSFGNEALRETVEEAARLSDGLDSFEGHFSEL 677 (929)
Q Consensus 635 l~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~~l 677 (929)
+.++++|++|++++|.. ..........+. +|+.|.+....+
T Consensus 194 l~~l~~L~~L~l~~n~l-~~~~~~~~~~~~-~L~~L~L~~n~l 234 (353)
T 2z80_A 194 LKSIQNVSHLILHMKQH-ILLLEIFVDVTS-SVECLELRDTDL 234 (353)
T ss_dssp TTTCSEEEEEEEECSCS-TTHHHHHHHHTT-TEEEEEEESCBC
T ss_pred HhccccCCeecCCCCcc-ccchhhhhhhcc-cccEEECCCCcc
Confidence 88888888888886652 111112233455 777777665443
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.73 E-value=1.9e-16 Score=179.75 Aligned_cols=309 Identities=18% Similarity=0.205 Sum_probs=208.4
Q ss_pred ccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceeec
Q 042574 497 ENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLL 576 (929)
Q Consensus 497 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l 576 (929)
.++++|++++|.+..+|. ..++|++|++++|. +..+|. .+++|++|++++|.++.+|.. .++|++|++
T Consensus 71 ~~l~~L~l~~~~l~~lp~----~~~~L~~L~l~~n~-l~~lp~----~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L 138 (454)
T 1jl5_A 71 RQAHELELNNLGLSSLPE----LPPHLESLVASCNS-LTELPE----LPQSLKSLLVDNNNLKALSDL---PPLLEYLGV 138 (454)
T ss_dssp HTCSEEECTTSCCSCCCS----CCTTCSEEECCSSC-CSSCCC----CCTTCCEEECCSSCCSCCCSC---CTTCCEEEC
T ss_pred cCCCEEEecCCccccCCC----CcCCCCEEEccCCc-CCcccc----ccCCCcEEECCCCccCcccCC---CCCCCEEEC
Confidence 357899999999988875 24789999999997 556774 358999999999999887643 268999999
Q ss_pred ccccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCCchhccc
Q 042574 577 RWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGNEALRET 656 (929)
Q Consensus 577 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 656 (929)
++|. +..+|.++++++|++|++++|.++.+|..+ .+|++|++++|.++.+| . ++++++|++|++++|....
T Consensus 139 ~~n~-l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~-~~~l~~L~~L~l~~N~l~~--- 209 (454)
T 1jl5_A 139 SNNQ-LEKLPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-E-LQNLPFLTAIYADNNSLKK--- 209 (454)
T ss_dssp CSSC-CSSCCCCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-C-CTTCTTCCEEECCSSCCSS---
T ss_pred cCCC-CCCCcccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-c-ccCCCCCCEEECCCCcCCc---
Confidence 9985 456888999999999999999999988654 58999999999999887 3 7999999999999775321
Q ss_pred HHHHhcccccccEeEEEecccccchhcccccCCCCceeEEEEecccccccccccCcCCCceeEeecccccCCCCcccCcc
Q 042574 657 VEEAARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMITGLELPKSVILNNYKICRGEEPIVLPE 736 (929)
Q Consensus 657 ~~~l~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~L~~~~~~~~~~~~~~~~ 736 (929)
+.....+|+.|.+....+..++. ......++.+.+..+....... ....++.+.+++..+..... .++
T Consensus 210 ---l~~~~~~L~~L~l~~n~l~~lp~---~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~l~~---~~~ 277 (454)
T 1jl5_A 210 ---LPDLPLSLESIVAGNNILEELPE---LQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTDLPE---LPQ 277 (454)
T ss_dssp ---CCCCCTTCCEEECCSSCCSSCCC---CTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSCCCC---CCT
T ss_pred ---CCCCcCcccEEECcCCcCCcccc---cCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcccccCc---ccC
Confidence 11111278888887666554432 1123345555544433322111 12335555555444433111 235
Q ss_pred cccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchhhhcCCccEEEEecCcchhhhhccC
Q 042574 737 DVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDSIKEIIAVE 816 (929)
Q Consensus 737 ~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~l~~i~~~~ 816 (929)
+|+.|.+.++. +..+..+|++|+.|++++| .++.++. + .++|++|+++++ .++.++
T Consensus 278 ~L~~L~ls~N~--------------l~~l~~~~~~L~~L~l~~N-~l~~i~~---~--~~~L~~L~Ls~N-~l~~lp--- 333 (454)
T 1jl5_A 278 SLTFLDVSENI--------------FSGLSELPPNLYYLNASSN-EIRSLCD---L--PPSLEELNVSNN-KLIELP--- 333 (454)
T ss_dssp TCCEEECCSSC--------------CSEESCCCTTCCEEECCSS-CCSEECC---C--CTTCCEEECCSS-CCSCCC---
T ss_pred cCCEEECcCCc--------------cCcccCcCCcCCEEECcCC-cCCcccC---C--cCcCCEEECCCC-cccccc---
Confidence 66666665553 1112223347888888875 4444332 1 147888888875 344432
Q ss_pred cchhhhhhccccccccccCCCcceeecccccccccccccCccccCCCccEEEEeccCCCcc---ccCCCCcc
Q 042574 817 DEETEKELATNTIINTVTLPRLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCPKLKR---LSLSLPLL 885 (929)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~~L~~---lP~~l~~l 885 (929)
..+++|+.|+++++ .++.++. .+++|++|++++|+ +.. +|.++..+
T Consensus 334 ----------------~~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~-l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 334 ----------------ALPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNP-LREFPDIPESVEDL 382 (454)
T ss_dssp ----------------CCCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC-CSSCCCCCTTCCEE
T ss_pred ----------------ccCCcCCEEECCCC-ccccccc-----hhhhccEEECCCCC-CCcCCCChHHHHhh
Confidence 13689999999987 5777664 46899999999985 554 55555433
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.73 E-value=1.4e-16 Score=173.79 Aligned_cols=122 Identities=24% Similarity=0.370 Sum_probs=55.9
Q ss_pred cccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCc-ccccccccceeecccccccccCc-cccccCCCCEEEc
Q 042574 522 ILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPS-SVSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDL 599 (929)
Q Consensus 522 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l 599 (929)
++++++++++. +..+|..+ .+.|++|++++|.++.+|. .++++++|++|++++|......| .+.++++|++|++
T Consensus 32 ~l~~l~~~~~~-l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLG-LEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSC-CCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCC-ccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 44444444443 33444322 2344555555555444433 34445555555555443322223 3444555555555
Q ss_pred cCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecC
Q 042574 600 ERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFG 649 (929)
Q Consensus 600 ~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 649 (929)
++|.++.+|..+. ++|++|++++|.+..+++..+.++++|++|+++.|
T Consensus 108 s~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 155 (330)
T 1xku_A 108 SKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN 155 (330)
T ss_dssp CSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSS
T ss_pred CCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCC
Confidence 5554444444332 44555555555444444444444555555554433
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.72 E-value=8.1e-17 Score=177.37 Aligned_cols=145 Identities=21% Similarity=0.239 Sum_probs=107.4
Q ss_pred cEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCccc-Ccccccccccceeeccc
Q 042574 500 ERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVL-PSSVSNLTNLRSLLLRW 578 (929)
Q Consensus 500 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~ 578 (929)
...+.+++.+..+|..+. ++|++|++++|. +..++...+.++++|++|++++|.++.+ |..+.++++|++|++++
T Consensus 34 ~~c~~~~~~l~~iP~~~~---~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGLT---EAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp SEEECCSTTCSSCCTTCC---TTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEeeCCCCCccccccccc---ccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 346777777888876554 578888888886 6666665567888888888888888766 45578888888888887
Q ss_pred ccccccCc-c-ccccCCCCEEEccCCCCccccc--cccCCCCCCEEEccCC-CCccCCCCccCCCCCccEEEeecC
Q 042574 579 CRRLKRVP-S-VAKLLALQYLDLERTWIEEVPE--GMEMLENLSHLYLSSP-PLKKFPTGILPRLRNLYKLKLSFG 649 (929)
Q Consensus 579 ~~~~~~~~-~-~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~ 649 (929)
|.. +.+| . ++++++|++|++++|.++.+|. .+.++++|++|++++| .+..+++..+.++++|++|+++.|
T Consensus 110 n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 110 NYL-SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp SCC-SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred CcC-CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 743 4444 3 7778888888888888887776 4777888888888877 366676666777888888877755
No 54
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.71 E-value=1.1e-16 Score=174.63 Aligned_cols=280 Identities=18% Similarity=0.215 Sum_probs=190.6
Q ss_pred EcCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcc
Q 042574 481 KAGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEV 560 (929)
Q Consensus 481 ~~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 560 (929)
..+..+..+|... .++++.|++++|.+..+++..+..+++|++|++++|. +..++...|.++++|++|++++|.++.
T Consensus 40 ~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~ 116 (332)
T 2ft3_A 40 CSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNHLVE 116 (332)
T ss_dssp CCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSSCCCS
T ss_pred CCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCCcCCc
Confidence 3445667777643 4789999999999998887777899999999999997 666655556899999999999999999
Q ss_pred cCcccccccccceeecccccccccCc--cccccCCCCEEEccCCCCcc---ccccccCCCCCCEEEccCCCCccCCCCcc
Q 042574 561 LPSSVSNLTNLRSLLLRWCRRLKRVP--SVAKLLALQYLDLERTWIEE---VPEGMEMLENLSHLYLSSPPLKKFPTGIL 635 (929)
Q Consensus 561 lp~~i~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~---lp~~i~~l~~L~~L~l~~~~~~~~~~~~l 635 (929)
+|..+. ++|++|++++|.. ..+| .+.++++|++|++++|.++. .|..+..+ +|++|++++|.++.+|....
T Consensus 117 l~~~~~--~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~ 192 (332)
T 2ft3_A 117 IPPNLP--SSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP 192 (332)
T ss_dssp CCSSCC--TTCCEEECCSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC
T ss_pred cCcccc--ccCCEEECCCCcc-CccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc
Confidence 998776 8999999999854 4555 48999999999999998863 35557777 99999999999999887642
Q ss_pred CCCCCccEEEeecCCchhcccHHHHhcccccccEeEEEecccccchhcccccCCCCceeEEEEecccccccccccCcCCC
Q 042574 636 PRLRNLYKLKLSFGNEALRETVEEAARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMITGLELP 715 (929)
Q Consensus 636 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 715 (929)
++|++|++++|... ......+..+. +|+.|.+....+
T Consensus 193 ---~~L~~L~l~~n~i~-~~~~~~l~~l~-~L~~L~L~~N~l-------------------------------------- 229 (332)
T 2ft3_A 193 ---ETLNELHLDHNKIQ-AIELEDLLRYS-KLYRLGLGHNQI-------------------------------------- 229 (332)
T ss_dssp ---SSCSCCBCCSSCCC-CCCTTSSTTCT-TCSCCBCCSSCC--------------------------------------
T ss_pred ---CCCCEEECCCCcCC-ccCHHHhcCCC-CCCEEECCCCcC--------------------------------------
Confidence 68888888866421 11112223333 444443332221
Q ss_pred ceeEeecccccCCC-CcccCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchhh-
Q 042574 716 KSVILNNYKICRGE-EPIVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLP- 793 (929)
Q Consensus 716 ~~l~L~~~~~~~~~-~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~- 793 (929)
.... ..+..+++|+.|.+.++. +..+ ...+..++ +|+.|+++++ .++.++.....+
T Consensus 230 ----------~~~~~~~~~~l~~L~~L~L~~N~-l~~l---------p~~l~~l~-~L~~L~l~~N-~l~~~~~~~~~~~ 287 (332)
T 2ft3_A 230 ----------RMIENGSLSFLPTLRELHLDNNK-LSRV---------PAGLPDLK-LLQVVYLHTN-NITKVGVNDFCPV 287 (332)
T ss_dssp ----------CCCCTTGGGGCTTCCEEECCSSC-CCBC---------CTTGGGCT-TCCEEECCSS-CCCBCCTTSSSCS
T ss_pred ----------CcCChhHhhCCCCCCEEECCCCc-Ceec---------ChhhhcCc-cCCEEECCCC-CCCccChhHcccc
Confidence 1111 124455678888887764 2222 12245566 8999999885 566654322111
Q ss_pred ----hcCCccEEEEecCcchh-hhhccCcchhhhhhccccccccccCCCcceeeccccc
Q 042574 794 ----ALQNLEVLKVYGCDSIK-EIIAVEDEETEKELATNTIINTVTLPRLKKLRFYFLR 847 (929)
Q Consensus 794 ----~L~~L~~L~i~~c~~l~-~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 847 (929)
..++|+.|++.+++-.. .+.. .....+++|+.|+++++.
T Consensus 288 ~~~~~~~~l~~L~l~~N~~~~~~~~~---------------~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 288 GFGVKRAYYNGISLFNNPVPYWEVQP---------------ATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCSSSCCBSEEECCSSSSCGGGSCG---------------GGGTTBCCSTTEEC----
T ss_pred ccccccccccceEeecCcccccccCc---------------ccccccchhhhhhccccc
Confidence 14678888888875221 1111 233458899999988775
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=1.4e-16 Score=181.11 Aligned_cols=164 Identities=28% Similarity=0.373 Sum_probs=121.7
Q ss_pred EEcCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCc
Q 042574 480 VKAGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIE 559 (929)
Q Consensus 480 ~~~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 559 (929)
...+..+.++|.. ...+++.|++++|.+..++...+..+++|++|++++|. +..++...|.++++|++|+|++|.++
T Consensus 49 ~c~~~~l~~iP~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~ 125 (440)
T 3zyj_A 49 ICVRKNLREVPDG--ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLT 125 (440)
T ss_dssp ECCSCCCSSCCSC--CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSCCS
T ss_pred EeCCCCcCcCCCC--CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCcCC
Confidence 3445566777764 34678888888888887776667788888888888886 56666666678888888888888888
Q ss_pred ccCc-ccccccccceeecccccccccCc--cccccCCCCEEEccCC-CCcccccc-ccCCCCCCEEEccCCCCccCCCCc
Q 042574 560 VLPS-SVSNLTNLRSLLLRWCRRLKRVP--SVAKLLALQYLDLERT-WIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGI 634 (929)
Q Consensus 560 ~lp~-~i~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~-~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~ 634 (929)
.+|. .+..+++|++|++++|.. ..+| .+.++++|++|++++| .+..+|.. +.++++|++|++++|.++.+|.
T Consensus 126 ~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-- 202 (440)
T 3zyj_A 126 TIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-- 202 (440)
T ss_dssp SCCTTTSCSCSSCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC--
T ss_pred eeCHhHhhccccCceeeCCCCcc-cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc--
Confidence 7765 477888888888888753 4444 5778888888888875 66666653 7778888888888888877764
Q ss_pred cCCCCCccEEEeecC
Q 042574 635 LPRLRNLYKLKLSFG 649 (929)
Q Consensus 635 l~~l~~L~~L~l~~~ 649 (929)
+..+++|++|++++|
T Consensus 203 ~~~l~~L~~L~Ls~N 217 (440)
T 3zyj_A 203 LTPLIKLDELDLSGN 217 (440)
T ss_dssp CTTCSSCCEEECTTS
T ss_pred cCCCcccCEEECCCC
Confidence 677888888888765
No 56
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.71 E-value=2.2e-17 Score=178.24 Aligned_cols=252 Identities=15% Similarity=0.138 Sum_probs=182.5
Q ss_pred CcccEEEcccCCcCc--cCcHHHHccCCCCcEEEecC-CCCc-ccCcccccccccceeecccccccccCc-cccccCCCC
Q 042574 521 KILSTLLLQRNGYLQ--RIPECFFMHMRGLKVLNLSH-TNIE-VLPSSVSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQ 595 (929)
Q Consensus 521 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~ 595 (929)
.+++.|++++|.... .+|..+ .++++|++|++++ |.+. .+|..++++++|++|++++|.....+| .+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 579999999998555 678765 8999999999995 8777 789999999999999999987665777 699999999
Q ss_pred EEEccCCCCc-cccccccCCCCCCEEEccCCCCccCCCCccCCCC-CccEEEeecCCchhcccHHHHhcccccccEeEEE
Q 042574 596 YLDLERTWIE-EVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLR-NLYKLKLSFGNEALRETVEEAARLSDGLDSFEGH 673 (929)
Q Consensus 596 ~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~ 673 (929)
+|++++|.+. .+|..+.++++|++|++++|.++...+..+.+++ +|++|+++.|. +.. .
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~----------------l~~---~ 189 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR----------------LTG---K 189 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE----------------EEE---E
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe----------------eec---c
Confidence 9999999988 7888899999999999999999843344478887 89999988663 110 0
Q ss_pred ecccccchhcccccCCCCceeEEEEecccccccccccCcCCCceeEeecccccCCCCcccCcccccceeeecccCccccc
Q 042574 674 FSELKDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMITGLELPKSVILNNYKICRGEEPIVLPEDVQFLRMFEVSDVASLN 753 (929)
Q Consensus 674 ~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~L~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~l~ 753 (929)
.. ..+..++ |+.|.+.++.-....
T Consensus 190 ~~------------------------------------------------------~~~~~l~-L~~L~Ls~N~l~~~~- 213 (313)
T 1ogq_A 190 IP------------------------------------------------------PTFANLN-LAFVDLSRNMLEGDA- 213 (313)
T ss_dssp CC------------------------------------------------------GGGGGCC-CSEEECCSSEEEECC-
T ss_pred CC------------------------------------------------------hHHhCCc-ccEEECcCCcccCcC-
Confidence 00 0011112 566666655321111
Q ss_pred ccCccccCcccccccccceeEEEEecCCCccccchhchhhhcCCccEEEEecCcchh-hhhccCcchhhhhhcccccccc
Q 042574 754 DVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDSIK-EIIAVEDEETEKELATNTIINT 832 (929)
Q Consensus 754 ~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~l~-~i~~~~~~~~~~~~~~~~~~~~ 832 (929)
...+..++ +|+.|+++++. ++..++ .+..+++|++|++++|. ++ .++ ...
T Consensus 214 --------~~~~~~l~-~L~~L~L~~N~-l~~~~~--~~~~l~~L~~L~Ls~N~-l~~~~p----------------~~l 264 (313)
T 1ogq_A 214 --------SVLFGSDK-NTQKIHLAKNS-LAFDLG--KVGLSKNLNGLDLRNNR-IYGTLP----------------QGL 264 (313)
T ss_dssp --------GGGCCTTS-CCSEEECCSSE-ECCBGG--GCCCCTTCCEEECCSSC-CEECCC----------------GGG
T ss_pred --------CHHHhcCC-CCCEEECCCCc-eeeecC--cccccCCCCEEECcCCc-ccCcCC----------------hHH
Confidence 22345666 99999999964 443323 24567899999999874 33 222 122
Q ss_pred ccCCCcceeecccccccccccccCccccCCCccEEEEeccCCCccccC
Q 042574 833 VTLPRLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCPKLKRLSL 880 (929)
Q Consensus 833 ~~~p~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~~L~~lP~ 880 (929)
..+++|+.|+++++.--..++. . ..+++|+.|++.++|.+...|.
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~--~-~~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQ--G-GNLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCC--S-TTGGGSCGGGTCSSSEEESTTS
T ss_pred hcCcCCCEEECcCCcccccCCC--C-ccccccChHHhcCCCCccCCCC
Confidence 3588999999998764446664 2 5678899999998887765543
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.71 E-value=1.3e-16 Score=181.91 Aligned_cols=164 Identities=30% Similarity=0.380 Sum_probs=116.0
Q ss_pred EEcCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCc
Q 042574 480 VKAGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIE 559 (929)
Q Consensus 480 ~~~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 559 (929)
...+..+.++|.. .+++++.|++++|.+..++...+..+++|++|++++|. +..++...|.++++|++|+|++|.++
T Consensus 60 ~c~~~~l~~iP~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l~ 136 (452)
T 3zyi_A 60 VCTRRGLSEVPQG--IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWLT 136 (452)
T ss_dssp ECCSSCCSSCCSC--CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EECCCCcCccCCC--CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCcCC
Confidence 3445556667753 34677888888887777766666677888888888776 55555555577788888888888877
Q ss_pred ccCcc-cccccccceeecccccccccCc--cccccCCCCEEEccCC-CCcccccc-ccCCCCCCEEEccCCCCccCCCCc
Q 042574 560 VLPSS-VSNLTNLRSLLLRWCRRLKRVP--SVAKLLALQYLDLERT-WIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGI 634 (929)
Q Consensus 560 ~lp~~-i~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~-~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~ 634 (929)
.+|.. +..+++|++|++++|.. ..+| .+.++++|++|++++| .+..+|.. +.++++|++|++++|.++.+|.
T Consensus 137 ~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-- 213 (452)
T 3zyi_A 137 VIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-- 213 (452)
T ss_dssp BCCTTTSSSCTTCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC--
T ss_pred ccChhhhcccCCCCEEECCCCCc-ceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc--
Confidence 77654 67777888888887643 3444 4777788888888775 66666654 6777788888888887777654
Q ss_pred cCCCCCccEEEeecC
Q 042574 635 LPRLRNLYKLKLSFG 649 (929)
Q Consensus 635 l~~l~~L~~L~l~~~ 649 (929)
+..+++|++|++++|
T Consensus 214 ~~~l~~L~~L~Ls~N 228 (452)
T 3zyi_A 214 LTPLVGLEELEMSGN 228 (452)
T ss_dssp CTTCTTCCEEECTTS
T ss_pred ccccccccEEECcCC
Confidence 577777777777755
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.70 E-value=3.4e-18 Score=185.22 Aligned_cols=144 Identities=16% Similarity=0.140 Sum_probs=108.2
Q ss_pred ccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceeeccc
Q 042574 499 LERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLRW 578 (929)
Q Consensus 499 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~ 578 (929)
+...+++.+.+...+...+..+++|++|++++|. +..++...|.++++|++|++++|.++..+. +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcC
Confidence 3444555555554444455567789999999887 666665556889999999999998886664 88888999999988
Q ss_pred ccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCC
Q 042574 579 CRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGN 650 (929)
Q Consensus 579 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 650 (929)
|. +..++ ..++|++|++++|.+..++.. .+++|++|++++|.++.+++..+..+++|++|++++|.
T Consensus 90 n~-l~~l~---~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 90 NY-VQELL---VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155 (317)
T ss_dssp SE-EEEEE---ECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC
T ss_pred Cc-ccccc---CCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC
Confidence 74 33333 447889999999988877654 46789999999998888877667888889988888663
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=2.5e-16 Score=178.96 Aligned_cols=243 Identities=21% Similarity=0.265 Sum_probs=177.1
Q ss_pred cccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccC-cccccccccceeec
Q 042574 498 NLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLP-SSVSNLTNLRSLLL 576 (929)
Q Consensus 498 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l 576 (929)
..+.++..++.+..+|..+. ++++.|++++|. +..++...|.++++|++|+|++|.++.++ ..+.++++|++|+|
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~---~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS---TNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC---TTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcCcCCCCCC---CCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 34567778888888887654 688999999997 66666666789999999999999988775 56888999999999
Q ss_pred ccccccccCc--cccccCCCCEEEccCCCCccccc-cccCCCCCCEEEccCC-CCccCCCCccCCCCCccEEEeecCCch
Q 042574 577 RWCRRLKRVP--SVAKLLALQYLDLERTWIEEVPE-GMEMLENLSHLYLSSP-PLKKFPTGILPRLRNLYKLKLSFGNEA 652 (929)
Q Consensus 577 ~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~ 652 (929)
++|. ++.+| .+..+++|++|++++|.+..+|. .+.++++|++|++++| .+..++...+.++++|++|++++|.
T Consensus 120 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-- 196 (440)
T 3zyj_A 120 FDNR-LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-- 196 (440)
T ss_dssp CSSC-CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC--
T ss_pred CCCc-CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc--
Confidence 9874 45555 58889999999999999988876 4888999999999885 4677777778889999999888663
Q ss_pred hcccHHHHhcccccccEeEEEecccccchhcccccCCCCceeEEEEecccccccccccCcCCCceeEeecccccCCCCcc
Q 042574 653 LRETVEEAARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMITGLELPKSVILNNYKICRGEEPI 732 (929)
Q Consensus 653 ~~~~~~~l~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~L~~~~~~~~~~~~ 732 (929)
+. .+. .+
T Consensus 197 ----------l~-~~~--------------------------------------------------------------~~ 203 (440)
T 3zyj_A 197 ----------LR-EIP--------------------------------------------------------------NL 203 (440)
T ss_dssp ----------CS-SCC--------------------------------------------------------------CC
T ss_pred ----------Cc-ccc--------------------------------------------------------------cc
Confidence 11 110 01
Q ss_pred cCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchhhhcCCccEEEEecCcchhhh
Q 042574 733 VLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDSIKEI 812 (929)
Q Consensus 733 ~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~l~~i 812 (929)
..+++|+.|.+.++. +..+. ...+..++ +|+.|+++++ .++.+++ ..+..+++|++|+++++ .++.+
T Consensus 204 ~~l~~L~~L~Ls~N~-l~~~~--------~~~~~~l~-~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~ 270 (440)
T 3zyj_A 204 TPLIKLDELDLSGNH-LSAIR--------PGSFQGLM-HLQKLWMIQS-QIQVIER-NAFDNLQSLVEINLAHN-NLTLL 270 (440)
T ss_dssp TTCSSCCEEECTTSC-CCEEC--------TTTTTTCT-TCCEEECTTC-CCCEECT-TSSTTCTTCCEEECTTS-CCCCC
T ss_pred CCCcccCEEECCCCc-cCccC--------hhhhccCc-cCCEEECCCC-ceeEECh-hhhcCCCCCCEEECCCC-CCCcc
Confidence 123456666666653 22111 22335566 9999999995 5666644 34677889999999986 55554
Q ss_pred hccCcchhhhhhccccccccccCCCcceeecccccc
Q 042574 813 IAVEDEETEKELATNTIINTVTLPRLKKLRFYFLRE 848 (929)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~ 848 (929)
+. .....+++|+.|+|+++|-
T Consensus 271 ~~---------------~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 271 PH---------------DLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CT---------------TTTSSCTTCCEEECCSSCE
T ss_pred Ch---------------hHhccccCCCEEEcCCCCc
Confidence 32 1123578999999988763
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.70 E-value=3.8e-17 Score=174.18 Aligned_cols=166 Identities=28% Similarity=0.400 Sum_probs=116.8
Q ss_pred EcCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCC-Cc
Q 042574 481 KAGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTN-IE 559 (929)
Q Consensus 481 ~~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~ 559 (929)
..+..+..+|.. .++++++|++++|.+..++...+..+++|++|++++|. +..++...|.++++|++|++++|. ++
T Consensus 18 c~~~~l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~ 94 (285)
T 1ozn_A 18 CPQQGLQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLR 94 (285)
T ss_dssp CCSSCCSSCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred cCcCCcccCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCcc
Confidence 344556666653 34677788888877777776666677788888887775 455544445677788888888776 66
Q ss_pred cc-CcccccccccceeecccccccccCc-cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCccCCCCccC
Q 042574 560 VL-PSSVSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILP 636 (929)
Q Consensus 560 ~l-p~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~ 636 (929)
.+ |..+..+++|++|++++|......| .+.++++|++|++++|.+..+|.. +.++++|++|++++|.++.++...+.
T Consensus 95 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 174 (285)
T 1ozn_A 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR 174 (285)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhc
Confidence 66 5567777788888887775444434 477777888888888777777654 67777788888887777777776677
Q ss_pred CCCCccEEEeecC
Q 042574 637 RLRNLYKLKLSFG 649 (929)
Q Consensus 637 ~l~~L~~L~l~~~ 649 (929)
++++|++|++++|
T Consensus 175 ~l~~L~~L~l~~n 187 (285)
T 1ozn_A 175 GLHSLDRLLLHQN 187 (285)
T ss_dssp TCTTCCEEECCSS
T ss_pred CccccCEEECCCC
Confidence 7777777777755
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=4.1e-16 Score=177.92 Aligned_cols=242 Identities=21% Similarity=0.210 Sum_probs=173.8
Q ss_pred cccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccC-cccccccccceeec
Q 042574 498 NLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLP-SSVSNLTNLRSLLL 576 (929)
Q Consensus 498 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l 576 (929)
....++..++.+..+|..+. +++++|++++|. +..++...|.++++|++|+|++|.++.++ ..+.++++|++|+|
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~---~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP---SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC---TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCcEEEECCCCcCccCCCCC---CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 34567777778888887553 688999999987 66665555688999999999999988665 67888999999999
Q ss_pred ccccccccCc--cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCC-CCccCCCCccCCCCCccEEEeecCCch
Q 042574 577 RWCRRLKRVP--SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSP-PLKKFPTGILPRLRNLYKLKLSFGNEA 652 (929)
Q Consensus 577 ~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~ 652 (929)
++|. +..+| .+..+++|++|++++|.+..+|.. +.++++|++|++++| .+..++...+.++++|++|++++|.
T Consensus 131 ~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-- 207 (452)
T 3zyi_A 131 FDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-- 207 (452)
T ss_dssp CSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC--
T ss_pred CCCc-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc--
Confidence 9875 44554 488899999999999988888764 788899999999885 4777777778888899998888663
Q ss_pred hcccHHHHhcccccccEeEEEecccccchhcccccCCCCceeEEEEecccccccccccCcCCCceeEeecccccCCCCcc
Q 042574 653 LRETVEEAARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMITGLELPKSVILNNYKICRGEEPI 732 (929)
Q Consensus 653 ~~~~~~~l~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~L~~~~~~~~~~~~ 732 (929)
+. .+. .+
T Consensus 208 ----------l~-~~~--------------------------------------------------------------~~ 214 (452)
T 3zyi_A 208 ----------IK-DMP--------------------------------------------------------------NL 214 (452)
T ss_dssp ----------CS-SCC--------------------------------------------------------------CC
T ss_pred ----------cc-ccc--------------------------------------------------------------cc
Confidence 11 100 01
Q ss_pred cCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchhhhcCCccEEEEecCcchhhh
Q 042574 733 VLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDSIKEI 812 (929)
Q Consensus 733 ~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~l~~i 812 (929)
..+++|+.|.+.++.-.. +. ...+..++ +|+.|+++++ .++.+++ ..+..+++|+.|+++++ .++.+
T Consensus 215 ~~l~~L~~L~Ls~N~l~~-~~--------~~~~~~l~-~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~N-~l~~~ 281 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPE-IR--------PGSFHGLS-SLKKLWVMNS-QVSLIER-NAFDGLASLVELNLAHN-NLSSL 281 (452)
T ss_dssp TTCTTCCEEECTTSCCSE-EC--------GGGGTTCT-TCCEEECTTS-CCCEECT-TTTTTCTTCCEEECCSS-CCSCC
T ss_pred cccccccEEECcCCcCcc-cC--------cccccCcc-CCCEEEeCCC-cCceECH-HHhcCCCCCCEEECCCC-cCCcc
Confidence 123456666666553211 10 22345566 9999999996 5565543 34677889999999986 56555
Q ss_pred hccCcchhhhhhccccccccccCCCcceeeccccc
Q 042574 813 IAVEDEETEKELATNTIINTVTLPRLKKLRFYFLR 847 (929)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 847 (929)
+. .....+++|+.|+|+++|
T Consensus 282 ~~---------------~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 282 PH---------------DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CT---------------TSSTTCTTCCEEECCSSC
T ss_pred Ch---------------HHhccccCCCEEEccCCC
Confidence 32 112357899999999876
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.69 E-value=1.1e-16 Score=170.46 Aligned_cols=146 Identities=24% Similarity=0.319 Sum_probs=127.1
Q ss_pred cEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCccc-Ccccccccccceeeccc
Q 042574 500 ERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVL-PSSVSNLTNLRSLLLRW 578 (929)
Q Consensus 500 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~ 578 (929)
+.++.+++.+..+|... .++|++|++++|. +..++...|..+++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~~---~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTTC---CTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcCC---CCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 67888888888888654 4789999999997 6777766678999999999999999977 77899999999999999
Q ss_pred ccccccC-c-cccccCCCCEEEccCCCCcccc-ccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecC
Q 042574 579 CRRLKRV-P-SVAKLLALQYLDLERTWIEEVP-EGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFG 649 (929)
Q Consensus 579 ~~~~~~~-~-~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 649 (929)
|..+..+ | .+..+++|++|++++|.+..++ ..+.++++|++|++++|.++.++...+.++++|++|++++|
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC
Confidence 8756666 4 6899999999999999999874 45889999999999999999998888899999999999866
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=1.2e-16 Score=172.16 Aligned_cols=164 Identities=24% Similarity=0.274 Sum_probs=99.8
Q ss_pred cCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccC---cHHHHccCCCCcEEEecCCCC
Q 042574 482 AGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRI---PECFFMHMRGLKVLNLSHTNI 558 (929)
Q Consensus 482 ~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~i 558 (929)
.+.++.++|.. ..+++++|++++|.+..+|...+..+++|++|++++|. +..+ +..+ ..+++|++|++++|.+
T Consensus 15 ~~~~l~~ip~~--~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-~~~~~L~~L~Ls~n~i 90 (306)
T 2z66_A 15 NSKGLTSVPTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSD-FGTTSLKYLDLSFNGV 90 (306)
T ss_dssp CSSCCSSCCSC--CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHH-HSCSCCCEEECCSCSE
T ss_pred CCCCcccCCCC--CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCccccc-ccccccCEEECCCCcc
Confidence 34455566653 23567777777777666666666667777777777665 3322 3443 3567777777777776
Q ss_pred cccCcccccccccceeecccccccccCc--cccccCCCCEEEccCCCCcccc-ccccCCCCCCEEEccCCCCcc-CCCCc
Q 042574 559 EVLPSSVSNLTNLRSLLLRWCRRLKRVP--SVAKLLALQYLDLERTWIEEVP-EGMEMLENLSHLYLSSPPLKK-FPTGI 634 (929)
Q Consensus 559 ~~lp~~i~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~-~~~~~ 634 (929)
..+|..+..+++|++|++++|......+ .+..+++|++|++++|.+...+ ..+..+++|++|++++|.+.. ..+..
T Consensus 91 ~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 170 (306)
T 2z66_A 91 ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170 (306)
T ss_dssp EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH
Confidence 6666666667777777777664332222 4666667777777776666433 335666677777776666654 22333
Q ss_pred cCCCCCccEEEeecC
Q 042574 635 LPRLRNLYKLKLSFG 649 (929)
Q Consensus 635 l~~l~~L~~L~l~~~ 649 (929)
+..+++|++|++++|
T Consensus 171 ~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 171 FTELRNLTFLDLSQC 185 (306)
T ss_dssp CTTCTTCCEEECTTS
T ss_pred HhhCcCCCEEECCCC
Confidence 566666666666644
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=2.9e-16 Score=169.22 Aligned_cols=243 Identities=20% Similarity=0.204 Sum_probs=178.9
Q ss_pred cEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCccc---Ccccccccccceeec
Q 042574 500 ERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVL---PSSVSNLTNLRSLLL 576 (929)
Q Consensus 500 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l---p~~i~~l~~L~~L~l 576 (929)
+.++.+++.+..+|..+. ++|++|++++|. +..+|..+|.++++|++|++++|.++.+ |..+..+++|++|++
T Consensus 10 ~~l~c~~~~l~~ip~~~~---~~l~~L~L~~n~-l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP---SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TEEECCSSCCSSCCSCCC---TTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CEEEcCCCCcccCCCCCC---CCCCEEECCCCc-cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 468888888999987553 689999999997 7788988789999999999999998855 667788999999999
Q ss_pred ccccccccCc-cccccCCCCEEEccCCCCccccc--cccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCCchh
Q 042574 577 RWCRRLKRVP-SVAKLLALQYLDLERTWIEEVPE--GMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGNEAL 653 (929)
Q Consensus 577 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 653 (929)
++|.. ..+| .+..+++|++|++++|.+..++. .+.++++|++|++++|.+...++..+.++++|++|++++|....
T Consensus 86 s~n~i-~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSE-EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCcc-ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 99854 4566 69999999999999999998875 68999999999999999988888888999999999999775332
Q ss_pred cccHHHHhcccccccEeEEEecccccchhcccccCCCCceeEEEEecccccccccccCcCCCceeEeecccccCCCCccc
Q 042574 654 RETVEEAARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMITGLELPKSVILNNYKICRGEEPIV 733 (929)
Q Consensus 654 ~~~~~~l~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~L~~~~~~~~~~~~~ 733 (929)
......+..+. +|+.|.+....+..... ..+.
T Consensus 165 ~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~-----------------------------------------------~~~~ 196 (306)
T 2z66_A 165 NFLPDIFTELR-NLTFLDLSQCQLEQLSP-----------------------------------------------TAFN 196 (306)
T ss_dssp GEECSCCTTCT-TCCEEECTTSCCCEECT-----------------------------------------------TTTT
T ss_pred ccchhHHhhCc-CCCEEECCCCCcCCcCH-----------------------------------------------HHhc
Confidence 12223345566 77777765443322100 1133
Q ss_pred CcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchhhhc-CCccEEEEecCc
Q 042574 734 LPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPAL-QNLEVLKVYGCD 807 (929)
Q Consensus 734 ~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L-~~L~~L~i~~c~ 807 (929)
.+++|+.|.+.++.-. .+. ...+..++ +|+.|++++|. ++..++ ..+..+ ++|++|++++++
T Consensus 197 ~l~~L~~L~L~~N~l~-~~~--------~~~~~~l~-~L~~L~L~~N~-l~~~~~-~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 197 SLSSLQVLNMSHNNFF-SLD--------TFPYKCLN-SLQVLDYSLNH-IMTSKK-QELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp TCTTCCEEECTTSCCS-BCC--------SGGGTTCT-TCCEEECTTSC-CCBCSS-SSCCCCCTTCCEEECTTCC
T ss_pred CCCCCCEEECCCCccC-ccC--------hhhccCcc-cCCEeECCCCC-CcccCH-HHHHhhhccCCEEEccCCC
Confidence 4556777777666421 111 11234566 88899998864 444333 234455 388888888753
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.67 E-value=1.7e-15 Score=177.19 Aligned_cols=148 Identities=21% Similarity=0.247 Sum_probs=123.4
Q ss_pred EEEcCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCC
Q 042574 479 MVKAGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNI 558 (929)
Q Consensus 479 ~~~~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 558 (929)
....+..++.+|... .++++.|++++|.+..+|. .+++|++|++++|. +..+|. .+++|++|++++|.+
T Consensus 45 L~ls~n~L~~lp~~l--~~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~l 113 (622)
T 3g06_A 45 LNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQ-LTSLPV----LPPGLLELSIFSNPL 113 (622)
T ss_dssp EECCSSCCSCCCSCC--CTTCSEEEECSCCCSCCCC----CCTTCCEEEECSCC-CSCCCC----CCTTCCEEEECSCCC
T ss_pred EEecCCCcCccChhh--CCCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCc-CCcCCC----CCCCCCEEECcCCcC
Confidence 334556677888754 3789999999999998876 57899999999997 777885 689999999999999
Q ss_pred cccCcccccccccceeecccccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCC
Q 042574 559 EVLPSSVSNLTNLRSLLLRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRL 638 (929)
Q Consensus 559 ~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l 638 (929)
+.+|. .+.+|++|++++|. ++.+|. .+++|++|++++|.++.+|.. +++|+.|++++|.++.+| ..+
T Consensus 114 ~~l~~---~l~~L~~L~L~~N~-l~~lp~--~l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~----~~~ 180 (622)
T 3g06_A 114 THLPA---LPSGLCKLWIFGNQ-LTSLPV--LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLP----MLP 180 (622)
T ss_dssp CCCCC---CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCC----CCC
T ss_pred CCCCC---CCCCcCEEECCCCC-CCcCCC--CCCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCCCCCCc----ccC
Confidence 99987 67899999999984 566764 248999999999999998863 578999999999999887 356
Q ss_pred CCccEEEeecCC
Q 042574 639 RNLYKLKLSFGN 650 (929)
Q Consensus 639 ~~L~~L~l~~~~ 650 (929)
++|+.|++++|.
T Consensus 181 ~~L~~L~Ls~N~ 192 (622)
T 3g06_A 181 SGLQELSVSDNQ 192 (622)
T ss_dssp TTCCEEECCSSC
T ss_pred CCCcEEECCCCC
Confidence 889999998764
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=1.2e-15 Score=161.11 Aligned_cols=192 Identities=24% Similarity=0.365 Sum_probs=155.3
Q ss_pred EEEcCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCC
Q 042574 479 MVKAGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNI 558 (929)
Q Consensus 479 ~~~~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 558 (929)
+...+.++..+|.. .+.++++|++++|.+..++...+..+++|++|++++|. +..++..+|.++++|++|++++|.+
T Consensus 21 l~~~~~~l~~ip~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l 97 (270)
T 2o6q_A 21 VDCSSKKLTAIPSN--IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKL 97 (270)
T ss_dssp EECTTSCCSSCCSC--CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCC
T ss_pred EEccCCCCCccCCC--CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcC
Confidence 34455667778764 34689999999999999988777899999999999997 7788888888999999999999999
Q ss_pred cccCcc-cccccccceeecccccccccCc-cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCccCCCCcc
Q 042574 559 EVLPSS-VSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGIL 635 (929)
Q Consensus 559 ~~lp~~-i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l 635 (929)
+.+|.. +..+++|++|++++|......+ .+..+++|++|++++|.+..+|.. +..+++|++|++++|.++.+++..+
T Consensus 98 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 177 (270)
T 2o6q_A 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177 (270)
T ss_dssp CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHh
Confidence 988754 5889999999999985544444 488999999999999999998876 7889999999999999999998888
Q ss_pred CCCCCccEEEeecCCchhcccHHHHhcccccccEeEEEec
Q 042574 636 PRLRNLYKLKLSFGNEALRETVEEAARLSDGLDSFEGHFS 675 (929)
Q Consensus 636 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~ 675 (929)
.++++|++|++++|... ......+..+. +|+.|.+...
T Consensus 178 ~~l~~L~~L~L~~N~l~-~~~~~~~~~l~-~L~~L~l~~N 215 (270)
T 2o6q_A 178 DKLTELKTLKLDNNQLK-RVPEGAFDSLE-KLKMLQLQEN 215 (270)
T ss_dssp TTCTTCCEEECCSSCCS-CCCTTTTTTCT-TCCEEECCSS
T ss_pred ccCCCcCEEECCCCcCC-cCCHHHhcccc-CCCEEEecCC
Confidence 99999999999977422 22222344555 6777666443
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.63 E-value=2.1e-15 Score=159.79 Aligned_cols=135 Identities=24% Similarity=0.251 Sum_probs=66.3
Q ss_pred ccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccC-cccccccccceee
Q 042574 497 ENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLP-SSVSNLTNLRSLL 575 (929)
Q Consensus 497 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~ 575 (929)
+++++|++++|.+..++...+..+++|++|++++|. +..++...|.++++|++|++++|.++.++ ..+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 345555555555555544444455555555555554 33444333445555555555555555443 3345555555555
Q ss_pred cccccccccCc-cccccCCCCEEEccCCCCcc--ccccccCCCCCCEEEccCCCCccCCC
Q 042574 576 LRWCRRLKRVP-SVAKLLALQYLDLERTWIEE--VPEGMEMLENLSHLYLSSPPLKKFPT 632 (929)
Q Consensus 576 l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~~~ 632 (929)
+++|......+ .++++++|++|++++|.+.. +|..+.++++|++|++++|.++.++.
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 55543222222 34555555555555554443 34445555555555555554444433
No 68
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.63 E-value=2.3e-16 Score=187.00 Aligned_cols=334 Identities=13% Similarity=0.056 Sum_probs=202.1
Q ss_pred ccccccEEEcccCCCCcCCC----CCCCCCCcccEEEcccCCcC----ccCcHHHHccCCCCcEEEecCCCCcccCcccc
Q 042574 495 WEENLERVSLMDNHIEEIPS----NMSPHCKILSTLLLQRNGYL----QRIPECFFMHMRGLKVLNLSHTNIEVLPSSVS 566 (929)
Q Consensus 495 ~~~~l~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~ 566 (929)
.++++++|++++|.+..... .+...+++|++|++++|... ..++ .++.++++|++|++++|.+..+|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE-TIARNCRSLVSVKVGDFEILELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH-HHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH-HHHhhCCCCcEEeccCccHHHHHHHHh
Confidence 34678899998887543321 12346788999999888732 1222 334678899999999988888888888
Q ss_pred cccccceeecccccccc---cCc-cccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCC-CccCCCCCc
Q 042574 567 NLTNLRSLLLRWCRRLK---RVP-SVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPT-GILPRLRNL 641 (929)
Q Consensus 567 ~l~~L~~L~l~~~~~~~---~~~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L 641 (929)
.+++|++|+++++.... ..+ .+..+++|+.|+++++....+|..+..+++|++|++++|.++.... ..+.++++|
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 89999999988543321 122 5788889999999887777788878888999999999988643221 235788999
Q ss_pred cEEEeecCCchhcccHHHH-hcccccccEeEEEe-----------cccccchhcccccCCCCceeEEEEecccccccccc
Q 042574 642 YKLKLSFGNEALRETVEEA-ARLSDGLDSFEGHF-----------SELKDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMI 709 (929)
Q Consensus 642 ~~L~l~~~~~~~~~~~~~l-~~l~~~L~~L~~~~-----------~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 709 (929)
++|+++. ......+..+ ..++ +|+.|.+.. ..+............+.|
T Consensus 321 ~~L~L~~--~~~~~~l~~~~~~~~-~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L----------------- 380 (592)
T 3ogk_B 321 EVLETRN--VIGDRGLEVLAQYCK-QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQEL----------------- 380 (592)
T ss_dssp CEEEEEG--GGHHHHHHHHHHHCT-TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTC-----------------
T ss_pred CEEeccC--ccCHHHHHHHHHhCC-CCCEEEeecCccccccccccCccCHHHHHHHHhhCccC-----------------
Confidence 9999982 2233333333 3455 788888872 222211110001112233
Q ss_pred cCcCCCceeEeecccccCCC-Cccc-Ccccccceeeeccc---CcccccccCccccCccc-ccccccceeEEEEecCCC-
Q 042574 710 TGLELPKSVILNNYKICRGE-EPIV-LPEDVQFLRMFEVS---DVASLNDVLPREQGLVN-IGKFSHDLKVLSFVHCHN- 782 (929)
Q Consensus 710 ~~~~~~~~l~L~~~~~~~~~-~~~~-~~~~L~~L~i~~~~---~~~~l~~~~~~~~~l~~-l~~~~~~L~~L~L~~c~~- 782 (929)
+.+.+....+.... ..+. .+++|+.|.+.++. .++..+ ...++.. +..++ +|++|+++.|.+
T Consensus 381 ------~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p----~~~~~~~~~~~~~-~L~~L~L~~~~~~ 449 (592)
T 3ogk_B 381 ------EYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP----LDNGVRSLLIGCK-KLRRFAFYLRQGG 449 (592)
T ss_dssp ------SEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC----CHHHHHHHHHHCT-TCCEEEEECCGGG
T ss_pred ------eEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch----HHHHHHHHHHhCC-CCCEEEEecCCCC
Confidence 33333222211111 1111 25678888887543 332210 0001111 23466 899999988764
Q ss_pred ccccchhchhhhcCCccEEEEecCcchhhhhccCcchhhhhhccccccccccCCCcceeecccccccccccccCccccCC
Q 042574 783 LKNLFSLWLLPALQNLEVLKVYGCDSIKEIIAVEDEETEKELATNTIINTVTLPRLKKLRFYFLREFKRFCSNNGVLVCN 862 (929)
Q Consensus 783 l~~l~~~~~l~~L~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~~~p 862 (929)
+++.........+++|++|++++|. ++... .. .....+++|+.|+|++|+ +...........+|
T Consensus 450 l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~------~~--------~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~ 513 (592)
T 3ogk_B 450 LTDLGLSYIGQYSPNVRWMLLGYVG-ESDEG------LM--------EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLP 513 (592)
T ss_dssp CCHHHHHHHHHSCTTCCEEEECSCC-SSHHH------HH--------HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCS
T ss_pred ccHHHHHHHHHhCccceEeeccCCC-CCHHH------HH--------HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcC
Confidence 3432222223457889999998874 32210 00 011257899999999987 54322111334678
Q ss_pred CccEEEEeccCCCcc
Q 042574 863 SLQEIKVRGCPKLKR 877 (929)
Q Consensus 863 ~L~~L~I~~C~~L~~ 877 (929)
+|++|++++|. ++.
T Consensus 514 ~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 514 SLRYLWVQGYR-ASM 527 (592)
T ss_dssp SCCEEEEESCB-CCT
T ss_pred ccCeeECcCCc-CCH
Confidence 99999999997 553
No 69
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.62 E-value=4.7e-15 Score=154.54 Aligned_cols=167 Identities=26% Similarity=0.363 Sum_probs=140.5
Q ss_pred EEcCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCc
Q 042574 480 VKAGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIE 559 (929)
Q Consensus 480 ~~~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 559 (929)
...+..+..+|.. ..++++.|++++|.+..++...+..+++|++|++++|. +..++...|.++++|++|++++|.++
T Consensus 20 ~~~~~~l~~~p~~--~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~ 96 (251)
T 3m19_A 20 DCQGKSLDSVPSG--IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLA 96 (251)
T ss_dssp ECTTCCCSSCCSC--CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred ecCCCCccccCCC--CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCccc
Confidence 3455667778764 34689999999999998888777789999999999997 66677666788999999999999999
Q ss_pred ccCc-ccccccccceeecccccccccCc--cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCccCCCCcc
Q 042574 560 VLPS-SVSNLTNLRSLLLRWCRRLKRVP--SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGIL 635 (929)
Q Consensus 560 ~lp~-~i~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l 635 (929)
.+|. .+..+++|++|++++|. +..+| .+..+++|++|++++|.++.+|.. +..+++|++|++++|.++.+++..+
T Consensus 97 ~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 175 (251)
T 3m19_A 97 SLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHH
Confidence 7764 46889999999999984 44555 378899999999999999988874 8889999999999999999988888
Q ss_pred CCCCCccEEEeecCC
Q 042574 636 PRLRNLYKLKLSFGN 650 (929)
Q Consensus 636 ~~l~~L~~L~l~~~~ 650 (929)
.++++|+.|++++|.
T Consensus 176 ~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 176 DRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTCTTCCEEECCSCC
T ss_pred hCCCCCCEEEeeCCc
Confidence 999999999998775
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.62 E-value=1.2e-15 Score=157.83 Aligned_cols=159 Identities=16% Similarity=0.276 Sum_probs=136.8
Q ss_pred cccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecC-CCCcccC-c
Q 042574 486 LLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSH-TNIEVLP-S 563 (929)
Q Consensus 486 l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~i~~lp-~ 563 (929)
+.++|. ...+++.|++++|.+..++...+..+++|++|++++|..+..++...|.++++|++|++++ |.++.+| .
T Consensus 23 l~~ip~---~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC---CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC---CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 677776 4568999999999999998877888999999999999657778876678999999999998 8999887 4
Q ss_pred ccccccccceeecccccccccCccccccCCCC---EEEccCC-CCcccccc-ccCCCCCC-EEEccCCCCccCCCCccCC
Q 042574 564 SVSNLTNLRSLLLRWCRRLKRVPSVAKLLALQ---YLDLERT-WIEEVPEG-MEMLENLS-HLYLSSPPLKKFPTGILPR 637 (929)
Q Consensus 564 ~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~---~L~l~~~-~i~~lp~~-i~~l~~L~-~L~l~~~~~~~~~~~~l~~ 637 (929)
.+..+++|++|++++|. ++.+|.+..+++|+ +|++++| .++.+|.. +.++++|+ +|++++|.++.+|...+..
T Consensus 100 ~f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~ 178 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG 178 (239)
T ss_dssp SEECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT
T ss_pred HhCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC
Confidence 67899999999999985 55577788888888 9999999 99988875 88899999 9999999999888876666
Q ss_pred CCCccEEEeecC
Q 042574 638 LRNLYKLKLSFG 649 (929)
Q Consensus 638 l~~L~~L~l~~~ 649 (929)
++|++|++++|
T Consensus 179 -~~L~~L~L~~n 189 (239)
T 2xwt_C 179 -TKLDAVYLNKN 189 (239)
T ss_dssp -CEEEEEECTTC
T ss_pred -CCCCEEEcCCC
Confidence 88999999876
No 71
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.60 E-value=1.2e-14 Score=159.75 Aligned_cols=292 Identities=14% Similarity=0.155 Sum_probs=171.6
Q ss_pred ccccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCC------CHHHH
Q 042574 137 TTATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL------DLIKL 210 (929)
Q Consensus 137 ~~~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~------~~~~~ 210 (929)
.+..++|| +++++++.+++.++ +++.|+|++|+|||||+++++++. + .+|+.+.... +...+
T Consensus 10 ~~~~~~gR--~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~----~----~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 10 RREDIFDR--EEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER----P----GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp SGGGSCSC--HHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS----S----EEEEEHHHHHHTTTCBCHHHH
T ss_pred ChHhcCCh--HHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc----C----cEEEEeecccccccCCCHHHH
Confidence 34679999 77888888888654 799999999999999999998763 1 6777765432 55666
Q ss_pred HHHHHHHhcC-----------------CCCC-CccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC---------cccccc
Q 042574 211 QTEIATALKQ-----------------SLPE-NEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP---------LEEVGI 263 (929)
Q Consensus 211 ~~~i~~~l~~-----------------~~~~-~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~---------~~~l~~ 263 (929)
...+...+.. ..+. ..+.......+.......++++|||||++.... +..+..
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~ 157 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY 157 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence 6666665432 0000 012222233333332222499999999976332 111111
Q ss_pred CCCCCCCCcEEEEEeCcccc-cc---------cC--Ccc-eEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHH
Q 042574 264 PEPSEENGCKLVITTRSLGV-SR---------SM--DCK-EIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVE 330 (929)
Q Consensus 264 ~~~~~~~gs~ilvTtR~~~v-~~---------~~--~~~-~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~ 330 (929)
... ...+.++|+|++...+ .. .. ... .+.+.+|+.+|+.+++...+..... ....+.+..|++
T Consensus 158 ~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~---~~~~~~~~~i~~ 233 (350)
T 2qen_A 158 AYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL---DVPENEIEEAVE 233 (350)
T ss_dssp HHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHH
T ss_pred HHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHH
Confidence 111 1246789999887542 11 01 112 3899999999999999876533221 112457788999
Q ss_pred hcCCccHHHHHHHhhhcCCCChhHHH-HHHHHHhhhhccCCCCchhhhhhHHhhcccCCChhhhhHhhhhccCCCCCccC
Q 042574 331 ECDGLPLAIVTVASCMRGVDEIHEWR-NALNELRGLVRSRNGVNADVLGRLEFSYHRLKDDKVQQCFLYCALYPEDFAIP 409 (929)
Q Consensus 331 ~c~g~Plai~~~~~~L~~~~~~~~w~-~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~a~fp~~~~i~ 409 (929)
.|+|+|+++..++..+....+...+. ...+...... ...+. .+.+ + + +..+..+..+|. . ..+
T Consensus 234 ~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~---~l~~-~-~-~~~~~~l~~la~-g---~~~ 297 (350)
T 2qen_A 234 LLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLI------MGELE---ELRR-R-S-PRYVDILRAIAL-G---YNR 297 (350)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH------HHHHH---HHHH-H-C-HHHHHHHHHHHT-T---CCS
T ss_pred HhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHH------HHHHH---HHHh-C-C-hhHHHHHHHHHh-C---CCC
Confidence 99999999999887643211222221 1111110000 01111 1111 2 5 678889998887 2 234
Q ss_pred HHHHHHHHHHc-CcccchhcHHHHHHhHHHHHHHHHHccccccccCCCeEEechHHHHHHH
Q 042574 410 KEELIDYWIAE-GFIEEVKDVQAKYDRGHTILNRLVNCCLLERAEDGGCVKMHDLIRDMAL 469 (929)
Q Consensus 410 ~~~li~~w~a~-g~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~mHdlv~~~a~ 469 (929)
...+....-.. |-+ .......+++.|.+++++...+ +.+...|++++++.+
T Consensus 298 ~~~l~~~~~~~~~~~--------~~~~~~~~l~~L~~~gli~~~~-~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 298 WSLIRDYLAVKGTKI--------PEPRLYALLENLKKMNWIVEED-NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHHHTTCCC--------CHHHHHHHHHHHHHTTSEEEET-TEEEESSHHHHHHHT
T ss_pred HHHHHHHHHHHhCCC--------CHHHHHHHHHHHHhCCCEEecC-CEEEEecHHHHHHHc
Confidence 44444332111 101 1235667899999999998752 334456888888753
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.60 E-value=5.3e-15 Score=157.40 Aligned_cols=164 Identities=24% Similarity=0.272 Sum_probs=117.3
Q ss_pred cCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCccc
Q 042574 482 AGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVL 561 (929)
Q Consensus 482 ~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l 561 (929)
.+.++..+|.. ..++++.|++++|.+..++...+..+++|+.|++++|. +..++.. ..+++|++|++++|.++.+
T Consensus 18 ~~~~l~~ip~~--~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~--~~l~~L~~L~Ls~N~l~~l 92 (290)
T 1p9a_G 18 DKRNLTALPPD--LPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD--GTLPVLGTLDLSHNQLQSL 92 (290)
T ss_dssp TTSCCSSCCSC--CCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC--SCCTTCCEEECCSSCCSSC
T ss_pred CCCCCCcCCCC--CCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC--CCCCcCCEEECCCCcCCcC
Confidence 34455666654 24577788888887776665556677788888888776 5555542 5677788888888887777
Q ss_pred CcccccccccceeecccccccccCc-cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCccCCCCccCCCC
Q 042574 562 PSSVSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLR 639 (929)
Q Consensus 562 p~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 639 (929)
|..+..+++|++|++++|......+ .+..+++|++|++++|.++.+|.. +..+++|++|++++|.++.+|.+.+.+++
T Consensus 93 ~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 172 (290)
T 1p9a_G 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172 (290)
T ss_dssp CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCT
T ss_pred chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcC
Confidence 7777777888888888764433333 477778888888888877777665 56777888888888887777777777788
Q ss_pred CccEEEeecCC
Q 042574 640 NLYKLKLSFGN 650 (929)
Q Consensus 640 ~L~~L~l~~~~ 650 (929)
+|+.|+++.|.
T Consensus 173 ~L~~L~L~~N~ 183 (290)
T 1p9a_G 173 NLDTLLLQENS 183 (290)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEECCCCc
Confidence 88888877654
No 73
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.59 E-value=1.3e-14 Score=152.98 Aligned_cols=165 Identities=30% Similarity=0.437 Sum_probs=143.5
Q ss_pred cccccCCC-cccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccC
Q 042574 484 LRLLKFPG-EQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLP 562 (929)
Q Consensus 484 ~~l~~~p~-~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp 562 (929)
..+..++. .....+++++|++++|.+..++...+..+++|++|++++|. +..+|...|.++++|++|++++|.++.+|
T Consensus 47 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 125 (270)
T 2o6q_A 47 NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLP 125 (270)
T ss_dssp SCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeC
Confidence 34445554 34456789999999999999998888899999999999997 77788777889999999999999999776
Q ss_pred c-ccccccccceeecccccccccCc--cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCccCCCCccCCC
Q 042574 563 S-SVSNLTNLRSLLLRWCRRLKRVP--SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRL 638 (929)
Q Consensus 563 ~-~i~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l 638 (929)
. .+..+++|++|++++|. +..+| .+..+++|++|++++|.++.+|.. +.++++|++|++++|.++.++...+..+
T Consensus 126 ~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 204 (270)
T 2o6q_A 126 PRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204 (270)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred HHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccc
Confidence 5 46899999999999985 45555 489999999999999999988875 8889999999999999999999888999
Q ss_pred CCccEEEeecCC
Q 042574 639 RNLYKLKLSFGN 650 (929)
Q Consensus 639 ~~L~~L~l~~~~ 650 (929)
++|+.|++++|.
T Consensus 205 ~~L~~L~l~~N~ 216 (270)
T 2o6q_A 205 EKLKMLQLQENP 216 (270)
T ss_dssp TTCCEEECCSSC
T ss_pred cCCCEEEecCCC
Confidence 999999999775
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=1.3e-15 Score=174.65 Aligned_cols=121 Identities=18% Similarity=0.133 Sum_probs=57.3
Q ss_pred CcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceeecccccccccCccccccCCCCEEEcc
Q 042574 521 KILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLRWCRRLKRVPSVAKLLALQYLDLE 600 (929)
Q Consensus 521 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 600 (929)
++|++|++++|. +..+++..|..+++|++|+|++|.++..+. ++.+++|++|++++|. +..+| ..++|++|+++
T Consensus 34 ~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~---~~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL---VGPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEE---ECTTCCEEECC
T ss_pred CCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCC---CCCCcCEEECc
Confidence 345555555554 333333333455555555555555543332 4555555555555542 22222 12455555555
Q ss_pred CCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecC
Q 042574 601 RTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFG 649 (929)
Q Consensus 601 ~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 649 (929)
+|.+..+|.. .+++|++|++++|.++.+++..++++++|+.|++++|
T Consensus 108 ~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 154 (487)
T 3oja_A 108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154 (487)
T ss_dssp SSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS
T ss_pred CCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC
Confidence 5555544432 2345555555555555444444455555555555543
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=6e-16 Score=177.49 Aligned_cols=145 Identities=17% Similarity=0.133 Sum_probs=116.6
Q ss_pred cccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceee
Q 042574 496 EENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLL 575 (929)
Q Consensus 496 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~ 575 (929)
+++++.|++++|.+..+++..+..+++|++|++++|. +...++ +..+++|++|+|++|.++.+|. .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEE
Confidence 4589999999999998887777789999999999997 444444 5889999999999999887764 38899999
Q ss_pred cccccccccCccccccCCCCEEEccCCCCcccc-ccccCCCCCCEEEccCCCCccCCCCccC-CCCCccEEEeecC
Q 042574 576 LRWCRRLKRVPSVAKLLALQYLDLERTWIEEVP-EGMEMLENLSHLYLSSPPLKKFPTGILP-RLRNLYKLKLSFG 649 (929)
Q Consensus 576 l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~ 649 (929)
+++|... .++. ..+++|++|++++|.++.++ ..++++++|++|++++|.++..++..+. ++++|++|++++|
T Consensus 106 L~~N~l~-~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 106 AANNNIS-RVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp CCSSCCC-CEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CcCCcCC-CCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC
Confidence 9998543 3331 34688999999999998774 4688899999999999998876555454 7889999988866
No 76
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.59 E-value=3.8e-14 Score=156.32 Aligned_cols=290 Identities=14% Similarity=0.115 Sum_probs=169.2
Q ss_pred ccccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCC-----CCHHHHH
Q 042574 137 TTATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-----LDLIKLQ 211 (929)
Q Consensus 137 ~~~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-----~~~~~~~ 211 (929)
.+..++|| +++++.+.+ +.. +++.|+|++|+|||||++++++... . ..+|+.+... .+...+.
T Consensus 11 ~~~~~~gR--~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 11 NRKDFFDR--EKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN---L---PYIYLDLRKFEERNYISYKDFL 78 (357)
T ss_dssp SGGGSCCC--HHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT---C---CEEEEEGGGGTTCSCCCHHHHH
T ss_pred CHHHhcCh--HHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC---C---CEEEEEchhhccccCCCHHHHH
Confidence 34679999 788888988 765 6999999999999999999998762 1 2578887642 3445555
Q ss_pred HHHHHHhcC-------------CC-----CC---Ccc----HHHHHHHHHHHHHh-c-CcEEEEEecCCCc-----CCcc
Q 042574 212 TEIATALKQ-------------SL-----PE---NED----KVRRAGRLSEMLKA-K-AKFVLILDDMWEA-----FPLE 259 (929)
Q Consensus 212 ~~i~~~l~~-------------~~-----~~---~~~----~~~~~~~l~~~l~~-~-~~~LlvlDdv~~~-----~~~~ 259 (929)
..+.+.+.. .. +. ..+ .......+.+.+.+ . ++++|||||++.. .++.
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~ 158 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLL 158 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCH
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHH
Confidence 554443311 00 00 000 00112233344432 1 4999999999652 2222
Q ss_pred ccccCCCCCCCCcEEEEEeCcccccc----------cC-Cc-ce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHH
Q 042574 260 EVGIPEPSEENGCKLVITTRSLGVSR----------SM-DC-KE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIIN 326 (929)
Q Consensus 260 ~l~~~~~~~~~gs~ilvTtR~~~v~~----------~~-~~-~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~ 326 (929)
.+...+.....+.++|+|+|...... .. +. .. +.+.+|+.+++.+++...+..... ..... .
T Consensus 159 ~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~~----~ 233 (357)
T 2fna_A 159 PALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-DFKDY----E 233 (357)
T ss_dssp HHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-CCCCH----H
T ss_pred HHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-CCCcH----H
Confidence 22111111124678999999754211 11 11 23 899999999999999876543221 11111 7
Q ss_pred HHHHhcCCccHHHHHHHhhhcCCCChhHHHHH-HHHHhhhhccCCCCchhhhhhHH-hhc--ccCCChhhhhHhhhhccC
Q 042574 327 SVVEECDGLPLAIVTVASCMRGVDEIHEWRNA-LNELRGLVRSRNGVNADVLGRLE-FSY--HRLKDDKVQQCFLYCALY 402 (929)
Q Consensus 327 ~i~~~c~g~Plai~~~~~~L~~~~~~~~w~~~-l~~l~~~~~~~~~~~~~~~~~l~-~sy--~~L~~~~~k~cfl~~a~f 402 (929)
.|++.|+|+|+++..++..+....+...|... .+... ..+...+. +.+ ..|+ +..+..+..+|.
T Consensus 234 ~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~l~-~~~~~~l~~la~- 301 (357)
T 2fna_A 234 VVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----------KLILKEFENFLHGREIAR-KRYLNIMRTLSK- 301 (357)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----------HHHHHHHHHHHTTCGGGH-HHHHHHHHHHTT-
T ss_pred HHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----------HHHHHHHHHHhhcccccc-HHHHHHHHHHHc-
Confidence 79999999999999998876432233333211 11110 01111111 111 1577 788999999987
Q ss_pred CCCCccCHHHHHHHHH-HcCc-ccchhcHHHHHHhHHHHHHHHHHccccccccCCCeEEechHHHHHH
Q 042574 403 PEDFAIPKEELIDYWI-AEGF-IEEVKDVQAKYDRGHTILNRLVNCCLLERAEDGGCVKMHDLIRDMA 468 (929)
Q Consensus 403 p~~~~i~~~~li~~w~-a~g~-i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~~~~~~~mHdlv~~~a 468 (929)
+. +...+....- ..|. + .......+++.|+++++|...+ +.+...|++++++.
T Consensus 302 --g~--~~~~l~~~~~~~~g~~~--------~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 --CG--KWSDVKRALELEEGIEI--------SDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp --CB--CHHHHHHHHHHHHCSCC--------CHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred --CC--CHHHHHHHHHHhcCCCC--------CHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 21 4444432210 1121 1 1135667899999999998753 34555789998864
No 77
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.58 E-value=1.5e-16 Score=182.35 Aligned_cols=333 Identities=16% Similarity=0.084 Sum_probs=156.8
Q ss_pred ccccEEEcccCCCCc-----CCCCCCCCCCcccEEEcccCCcCccCcHHHHccCC----CCcEEEecCCCCc-----ccC
Q 042574 497 ENLERVSLMDNHIEE-----IPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMR----GLKVLNLSHTNIE-----VLP 562 (929)
Q Consensus 497 ~~l~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~----~L~~L~l~~~~i~-----~lp 562 (929)
+++++|++++|.+.. ++. .+..+++|++|++++|......+..++..++ +|++|++++|.++ .+|
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 345555555555441 111 1223455555555555422222223333343 4555555555554 234
Q ss_pred cccccccccceeecccccccccCc-cc-----cccCCCCEEEccCCCCcc-----ccccccCCCCCCEEEccCCCCccCC
Q 042574 563 SSVSNLTNLRSLLLRWCRRLKRVP-SV-----AKLLALQYLDLERTWIEE-----VPEGMEMLENLSHLYLSSPPLKKFP 631 (929)
Q Consensus 563 ~~i~~l~~L~~L~l~~~~~~~~~~-~~-----~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~~~~ 631 (929)
..+..+++|++|++++|......+ .+ ...++|++|++++|.++. ++..+..+++|++|++++|.+....
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 186 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAG 186 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHH
Confidence 455555555555555553211111 11 113345555555555442 2333444555555555555543321
Q ss_pred CCccC-----CCCCccEEEeecCCchhcc---cHHHHhcccccccEeEEEecccccchhcccccCCCCceeEEEEecccc
Q 042574 632 TGILP-----RLRNLYKLKLSFGNEALRE---TVEEAARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYR 703 (929)
Q Consensus 632 ~~~l~-----~l~~L~~L~l~~~~~~~~~---~~~~l~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~ 703 (929)
...+. .+++|++|++++|...... ....+..++ +|+.|.++...+.......-
T Consensus 187 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l------------------ 247 (461)
T 1z7x_W 187 VRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA-SLRELALGSNKLGDVGMAEL------------------ 247 (461)
T ss_dssp HHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT-TCCEEECCSSBCHHHHHHHH------------------
T ss_pred HHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCC-CccEEeccCCcCChHHHHHH------------------
Confidence 11111 2345555555544211110 112233344 55555544333222110000
Q ss_pred cccccccCcCCCceeEeecccccCCC-----CcccCcccccceeeecccCcccccccCccccCcccc-----ccccccee
Q 042574 704 MGAFMITGLELPKSVILNNYKICRGE-----EPIVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNI-----GKFSHDLK 773 (929)
Q Consensus 704 ~~~~~~~~~~~~~~l~L~~~~~~~~~-----~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l-----~~~~~~L~ 773 (929)
..........++.+.++++.+...+ ..+..+++|+.|++.++.-... .+..+ ...+ +|+
T Consensus 248 -~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~---------~~~~l~~~l~~~~~-~L~ 316 (461)
T 1z7x_W 248 -CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE---------GARLLCETLLEPGC-QLE 316 (461)
T ss_dssp -HHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH---------HHHHHHHHHTSTTC-CCC
T ss_pred -HHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH---------HHHHHHHHhccCCc-cce
Confidence 0000001233555555555443321 1233467788888877642110 01111 1124 899
Q ss_pred EEEEecCCCccccch---hchhhhcCCccEEEEecCcchhhhhccCcchhhhhhccccccccccCCCcceeecccccccc
Q 042574 774 VLSFVHCHNLKNLFS---LWLLPALQNLEVLKVYGCDSIKEIIAVEDEETEKELATNTIINTVTLPRLKKLRFYFLREFK 850 (929)
Q Consensus 774 ~L~L~~c~~l~~l~~---~~~l~~L~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~ 850 (929)
+|++++|. ++.... ...+..+++|++|++++| .+....... ... .-....++|+.|++++|. +.
T Consensus 317 ~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~---l~~-------~l~~~~~~L~~L~L~~n~-i~ 383 (461)
T 1z7x_W 317 SLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRE---LCQ-------GLGQPGSVLRVLWLADCD-VS 383 (461)
T ss_dssp EEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHH---HHH-------HHTSTTCCCCEEECTTSC-CC
T ss_pred eeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHH---HHH-------HHcCCCCceEEEECCCCC-CC
Confidence 99999985 443211 123567789999999987 444331100 000 000126799999999984 55
Q ss_pred -----cccccCccccCCCccEEEEeccCCCc
Q 042574 851 -----RFCSNNGVLVCNSLQEIKVRGCPKLK 876 (929)
Q Consensus 851 -----~i~~~~~~~~~p~L~~L~I~~C~~L~ 876 (929)
.++. ....+++|++|++++|+ +.
T Consensus 384 ~~~~~~l~~--~l~~~~~L~~L~l~~N~-i~ 411 (461)
T 1z7x_W 384 DSSCSSLAA--TLLANHSLRELDLSNNC-LG 411 (461)
T ss_dssp HHHHHHHHH--HHHHCCCCCEEECCSSS-CC
T ss_pred hhhHHHHHH--HHHhCCCccEEECCCCC-CC
Confidence 3443 44568999999999985 54
No 78
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.58 E-value=8.1e-16 Score=166.42 Aligned_cols=266 Identities=15% Similarity=0.101 Sum_probs=190.8
Q ss_pred cccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceee
Q 042574 496 EENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLL 575 (929)
Q Consensus 496 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~ 575 (929)
.+++++|++++|.+..+++..+..+++|++|++++|. +...++ +..+++|++|++++|.++.+|. +++|++|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchh--hhhcCCCCEEECcCCccccccC----CCCcCEEE
Confidence 4589999999999998876667789999999999997 444444 5899999999999999987763 48999999
Q ss_pred cccccccccCccccccCCCCEEEccCCCCccccc-cccCCCCCCEEEccCCCCccCCCCcc-CCCCCccEEEeecCCchh
Q 042574 576 LRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPE-GMEMLENLSHLYLSSPPLKKFPTGIL-PRLRNLYKLKLSFGNEAL 653 (929)
Q Consensus 576 l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~ 653 (929)
+++|.. ..++ ...+++|++|++++|.++.++. .+..+++|++|++++|.+..+++..+ ..+++|++|++++|.
T Consensus 106 l~~n~l-~~~~-~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~--- 180 (317)
T 3o53_A 106 AANNNI-SRVS-CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF--- 180 (317)
T ss_dssp CCSSCC-SEEE-ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC---
T ss_pred CCCCcc-CCcC-ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc---
Confidence 999854 4333 2337889999999999998865 58889999999999999988765544 578999999998763
Q ss_pred cccHHHHhcccccccEeEEEecccccchhcccccCCCCceeEEEEecccccccccccCcCCCceeEeecccccCCCCccc
Q 042574 654 RETVEEAARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMITGLELPKSVILNNYKICRGEEPIV 733 (929)
Q Consensus 654 ~~~~~~l~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~L~~~~~~~~~~~~~ 733 (929)
+..+.. ..
T Consensus 181 -------------l~~~~~-----------------------------------------------------------~~ 188 (317)
T 3o53_A 181 -------------IYDVKG-----------------------------------------------------------QV 188 (317)
T ss_dssp -------------CCEEEC-----------------------------------------------------------CC
T ss_pred -------------Cccccc-----------------------------------------------------------cc
Confidence 221100 01
Q ss_pred CcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchhhhcCCccEEEEecCcch-hhh
Q 042574 734 LPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDSI-KEI 812 (929)
Q Consensus 734 ~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~l-~~i 812 (929)
.+++|+.|.+.++.- ..+ .+.+..++ +|+.|++++| .++.+|. .+..+++|+.|++++++-. ..+
T Consensus 189 ~l~~L~~L~Ls~N~l-~~l---------~~~~~~l~-~L~~L~L~~N-~l~~l~~--~~~~l~~L~~L~l~~N~~~~~~~ 254 (317)
T 3o53_A 189 VFAKLKTLDLSSNKL-AFM---------GPEFQSAA-GVTWISLRNN-KLVLIEK--ALRFSQNLEHFDLRGNGFHCGTL 254 (317)
T ss_dssp CCTTCCEEECCSSCC-CEE---------CGGGGGGT-TCSEEECTTS-CCCEECT--TCCCCTTCCEEECTTCCCBHHHH
T ss_pred ccccCCEEECCCCcC-Ccc---------hhhhcccC-cccEEECcCC-cccchhh--HhhcCCCCCEEEccCCCccCcCH
Confidence 134566666655531 111 11234566 8999999986 6667654 3567889999999886432 111
Q ss_pred hccCcchhhhhhccccccccccCCCcceeecccccccccccccCccccCCCccEEEEeccCCCcc
Q 042574 813 IAVEDEETEKELATNTIINTVTLPRLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCPKLKR 877 (929)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~~L~~ 877 (929)
+ .....+++|+.|++.+++.++.... .....+.+....-..|..+..
T Consensus 255 ~----------------~~~~~~~~L~~l~l~~~~~l~~~~~--~~~~~~~~~~~~~~cc~~l~~ 301 (317)
T 3o53_A 255 R----------------DFFSKNQRVQTVAKQTVKKLTGQNE--EECTVPTLGHYGAYCCEDLPA 301 (317)
T ss_dssp H----------------HHHHTCHHHHHHHHHHHHHHHSSSS--CCCSSTTCEEETTEEEBCCTT
T ss_pred H----------------HHHhccccceEEECCCchhccCCch--hccCCCceecccceeeccCCh
Confidence 1 1122578899999998888887776 333344555555556777664
No 79
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.56 E-value=1.7e-14 Score=158.31 Aligned_cols=119 Identities=18% Similarity=0.177 Sum_probs=61.7
Q ss_pred EEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCc-ccccccccceeecccccccccCc--cccccCCCCE-EEcc
Q 042574 525 TLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPS-SVSNLTNLRSLLLRWCRRLKRVP--SVAKLLALQY-LDLE 600 (929)
Q Consensus 525 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~-L~l~ 600 (929)
+++.+++. ++.+|..+ .+++++|+|++|.|+.+|. .+.++++|++|+|++|...+.+| .+.++++|+. +.+.
T Consensus 13 ~v~C~~~~-Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQESK-VTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEESTT-CCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecCCC-CCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34444443 44445433 2345555555555555553 34555555555555554444444 3455555543 3344
Q ss_pred CCCCcccccc-ccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEee
Q 042574 601 RTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLS 647 (929)
Q Consensus 601 ~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 647 (929)
+|.+..+|+. +..+++|++|++++|.+..++...+....++..|++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~ 136 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQ 136 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhc
Confidence 4556655433 5666666666666666666555444444445555544
No 80
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.55 E-value=4.8e-14 Score=158.85 Aligned_cols=291 Identities=14% Similarity=0.108 Sum_probs=173.0
Q ss_pred ccccccchHHHHHHHHHHh-c----C--CCeeEEEE--EcCCCChHHHHHHHHHHHHhhhc--CCCc-EEEEEEECCCCC
Q 042574 139 ATLAGKKTKKVVERIWEDL-M----G--DKVTKIGV--WGMGGIGKTTIMKEINNRLQKET--NKFN-VVIWVTVSQPLD 206 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l-~----~--~~~~vv~I--~G~gGiGKTtLa~~v~~~~~~~~--~~f~-~~~wv~~s~~~~ 206 (929)
..++|| +.+++++..++ . + ...+.+.| +|++|+||||||+.+++...... ..+. .++|+.+....+
T Consensus 22 ~~l~gR--~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 22 PELRVR--RGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp SSCSSS--CHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCh--HHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 679999 56677777666 2 2 24456666 99999999999999998873211 1122 367888777778
Q ss_pred HHHHHHHHHHHhcCCCCC-CccHHHHHHHHHHHHH-hcCcEEEEEecCCCcC--------CccccccCC---CCCC--CC
Q 042574 207 LIKLQTEIATALKQSLPE-NEDKVRRAGRLSEMLK-AKAKFVLILDDMWEAF--------PLEEVGIPE---PSEE--NG 271 (929)
Q Consensus 207 ~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~--------~~~~l~~~~---~~~~--~g 271 (929)
...++..++.+++...+. ..+.......+...+. .+++++|||||++... .+..+...+ +..+ ..
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 889999999998765432 1223333444444443 3679999999997632 122111111 1012 34
Q ss_pred cEEEEEeCccccc-----------ccCCcceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcC------C
Q 042574 272 CKLVITTRSLGVS-----------RSMDCKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECD------G 334 (929)
Q Consensus 272 s~ilvTtR~~~v~-----------~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~------g 334 (929)
..||+||+...+. ..+... +.+.+++.++++++|...+..... .....++.+..|++.|+ |
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~-i~l~~l~~~e~~~ll~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~G 257 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFK-LHLPAYKSRELYTILEQRAELGLR-DTVWEPRHLELISDVYGEDKGGDG 257 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEE-EECCCCCHHHHHHHHHHHHHHHBC-TTSCCHHHHHHHHHHHCGGGTSCC
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCe-eeeCCCCHHHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHHhccCCC
Confidence 5588888754422 222222 899999999999999876532211 11123567888999999 9
Q ss_pred ccHHHHHHHhhhc------CC--CChhHHHHHHHHHhhhhccCCCCchhhhhhHHhhcccCCChhhhhHhhhhccCC--C
Q 042574 335 LPLAIVTVASCMR------GV--DEIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDDKVQQCFLYCALYP--E 404 (929)
Q Consensus 335 ~Plai~~~~~~L~------~~--~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~a~fp--~ 404 (929)
.|..+..+..... .. -+...+..++.... . ...+.-++..|| +..+.++..++.+. .
T Consensus 258 ~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~----------~--~~~~~~~l~~l~-~~~~~~l~aia~l~~~~ 324 (412)
T 1w5s_A 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE----------A--ASIQTHELEALS-IHELIILRLIAEATLGG 324 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------------CCSSSSSC-HHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh----------c--cchHHHHHHcCC-HHHHHHHHHHHHHHhcC
Confidence 9976655543211 11 11222332222110 0 234555778898 78888888888653 3
Q ss_pred CCccCHHHHHHHHH--H---cCcccchhcHHHHHHhHHHHHHHHHHccccccc
Q 042574 405 DFAIPKEELIDYWI--A---EGFIEEVKDVQAKYDRGHTILNRLVNCCLLERA 452 (929)
Q Consensus 405 ~~~i~~~~li~~w~--a---~g~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 452 (929)
+..++..++...+. + .|. .. ........++++|.+.+|+...
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 325 MEWINAGLLRQRYEDASLTMYNV-KP-----RGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp CSSBCHHHHHHHHHHHHHHHSCC-CC-----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCccHHHHHHHHHHHHHhhcCC-CC-----CCHHHHHHHHHHHHhCCCEEee
Confidence 33555555544432 1 121 00 0123456789999999999765
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.55 E-value=1.1e-15 Score=164.88 Aligned_cols=126 Identities=20% Similarity=0.163 Sum_probs=69.2
Q ss_pred CCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCc--ccCcccc-------cccccceeecccccccccCc-cc-
Q 042574 520 CKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIE--VLPSSVS-------NLTNLRSLLLRWCRRLKRVP-SV- 588 (929)
Q Consensus 520 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~--~lp~~i~-------~l~~L~~L~l~~~~~~~~~~-~~- 588 (929)
.++|+.|++++|.. .+|..+... |++|++++|.+. .+|..+. .+++|++|++++|......| .+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 34455555555552 455544322 555566665553 2444333 45666666666654443444 23
Q ss_pred -cccCCCCEEEccCCCCccccccccCC-----CCCCEEEccCCCCccCCCCccCCCCCccEEEeecCC
Q 042574 589 -AKLLALQYLDLERTWIEEVPEGMEML-----ENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGN 650 (929)
Q Consensus 589 -~~l~~L~~L~l~~~~i~~lp~~i~~l-----~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 650 (929)
..+++|++|++++|.++.+|..+..+ ++|++|++++|.+..+++..++++++|++|++++|.
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence 55666666666666666555545544 566666666666666655555666666666666543
No 82
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.55 E-value=1.3e-15 Score=180.45 Aligned_cols=368 Identities=15% Similarity=0.082 Sum_probs=172.8
Q ss_pred ccccEEEcccCCCCcCCC-CCCCCCCc-ccEEEcccCCcCcc-CcHHHHccCCCCcEEEecCCCCcc-----cCcccccc
Q 042574 497 ENLERVSLMDNHIEEIPS-NMSPHCKI-LSTLLLQRNGYLQR-IPECFFMHMRGLKVLNLSHTNIEV-----LPSSVSNL 568 (929)
Q Consensus 497 ~~l~~L~l~~~~~~~~~~-~~~~~~~~-L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l 568 (929)
+++++|++++|.+..... .+...+++ |++|++++|..... -...+..++++|++|+|++|.++. ++..+..+
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 191 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence 345666666554432110 01111233 66666665542111 011122355666666666665431 22223455
Q ss_pred cccceeeccccccc----ccCc-cccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCc---cCCCCccCCCCC
Q 042574 569 TNLRSLLLRWCRRL----KRVP-SVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLK---KFPTGILPRLRN 640 (929)
Q Consensus 569 ~~L~~L~l~~~~~~----~~~~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~---~~~~~~l~~l~~ 640 (929)
++|++|++++|... ..++ .+.++++|++|++++|.+..+|..+.++++|++|+++++... ......+..+++
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~ 271 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRK 271 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcccc
Confidence 66666666655332 1122 244556666666666666666555666666666666532211 000112344555
Q ss_pred ccEEEeecCCchhcccHHHHhcccccccEeEEEecccccchhcccccCCCCceeEEEEecccccc-cccccCcCCCceeE
Q 042574 641 LYKLKLSFGNEALRETVEEAARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRMG-AFMITGLELPKSVI 719 (929)
Q Consensus 641 L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~~~~~l~ 719 (929)
|+.|+++..... .....+..+. +|+.|.+....+............+.|+.+.+..+..... .......+.++.+.
T Consensus 272 L~~L~l~~~~~~--~l~~~~~~~~-~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 272 LCRLGLSYMGPN--EMPILFPFAA-QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp CCEEEETTCCTT--TGGGGGGGGG-GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred ccccCccccchh--HHHHHHhhcC-CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence 555555432110 0011122233 5555555433322111111112223444444431110000 00001123355555
Q ss_pred eec----------ccccC-CC--CcccCcccccceeeecccCcccccccCccccCcccccc-cccceeEEEEec---CCC
Q 042574 720 LNN----------YKICR-GE--EPIVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGK-FSHDLKVLSFVH---CHN 782 (929)
Q Consensus 720 L~~----------~~~~~-~~--~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~-~~~~L~~L~L~~---c~~ 782 (929)
+.+ +.... .. .....+++|+.|.+ .|..++. ..+..++. ++ +|+.|++++ |+.
T Consensus 349 L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~--------~~~~~l~~~~~-~L~~L~l~~~~~~n~ 418 (592)
T 3ogk_B 349 IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITN--------ESLESIGTYLK-NLCDFRLVLLDREER 418 (592)
T ss_dssp EECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCH--------HHHHHHHHHCC-SCCEEEEEECSCCSC
T ss_pred eecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccH--------HHHHHHHhhCC-CCcEEEEeecCCCcc
Confidence 552 21111 00 11233678888888 4444332 12333343 66 999999984 667
Q ss_pred ccccchh----chhhhcCCccEEEEecCcc-hhhhhccCcchhhhhhccccccccccCCCcceeecccccccccccccCc
Q 042574 783 LKNLFSL----WLLPALQNLEVLKVYGCDS-IKEIIAVEDEETEKELATNTIINTVTLPRLKKLRFYFLREFKRFCSNNG 857 (929)
Q Consensus 783 l~~l~~~----~~l~~L~~L~~L~i~~c~~-l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~~~~~ 857 (929)
+++.|.- ..+..+++|+.|++++|.+ +..... . .....+|+|+.|++++|. +.+......
T Consensus 419 l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~------~--------~~~~~~~~L~~L~L~~n~-l~~~~~~~~ 483 (592)
T 3ogk_B 419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL------S--------YIGQYSPNVRWMLLGYVG-ESDEGLMEF 483 (592)
T ss_dssp CSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH------H--------HHHHSCTTCCEEEECSCC-SSHHHHHHH
T ss_pred ccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH------H--------HHHHhCccceEeeccCCC-CCHHHHHHH
Confidence 7764211 1256789999999998864 221100 0 011248999999999875 443221113
Q ss_pred cccCCCccEEEEeccCCCcc--ccC---CCCccCCCCCCCC
Q 042574 858 VLVCNSLQEIKVRGCPKLKR--LSL---SLPLLDNGQPSPP 893 (929)
Q Consensus 858 ~~~~p~L~~L~I~~C~~L~~--lP~---~l~~l~~~~~~~~ 893 (929)
...+++|++|+|++|+ ++. +|. .+++|+.++++.|
T Consensus 484 ~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 484 SRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp HTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESC
T ss_pred HhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCC
Confidence 3467999999999998 653 332 3445554444444
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=3.7e-14 Score=147.74 Aligned_cols=175 Identities=24% Similarity=0.314 Sum_probs=143.3
Q ss_pred ccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCc-ccccccccceee
Q 042574 497 ENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPS-SVSNLTNLRSLL 575 (929)
Q Consensus 497 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~ 575 (929)
++.++++++++.+..+|..+. ++++.|++++|. +..++...|.++++|++|++++|.++.++. .+..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~---~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP---ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC---TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccccCCCCC---CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 456789999999999997654 689999999998 666666666899999999999999997754 479999999999
Q ss_pred cccccccccCc-cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCCchh
Q 042574 576 LRWCRRLKRVP-SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGNEAL 653 (929)
Q Consensus 576 l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 653 (929)
+++|......+ .+..+++|++|++++|.++.+|.. +.++++|++|++++|.++.+++..+.++++|++|++++|...
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~- 168 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ- 168 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-
Confidence 99986544443 578999999999999999999876 688999999999999999999988999999999999977532
Q ss_pred cccHHHHhcccccccEeEEEeccc
Q 042574 654 RETVEEAARLSDGLDSFEGHFSEL 677 (929)
Q Consensus 654 ~~~~~~l~~l~~~L~~L~~~~~~l 677 (929)
......+..+. +|+.|.+....+
T Consensus 169 ~~~~~~~~~l~-~L~~L~l~~N~~ 191 (251)
T 3m19_A 169 SVPHGAFDRLG-KLQTITLFGNQF 191 (251)
T ss_dssp CCCTTTTTTCT-TCCEEECCSCCB
T ss_pred ccCHHHHhCCC-CCCEEEeeCCce
Confidence 22223445566 777777755443
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.55 E-value=4.9e-14 Score=151.48 Aligned_cols=142 Identities=20% Similarity=0.284 Sum_probs=64.4
Q ss_pred cccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceeecc
Q 042574 498 NLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLR 577 (929)
Q Consensus 498 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~ 577 (929)
++++|+++++.+..++. +..+++|++|++++|. +..++. +..+++|++|++++|.++.+| .+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n~-i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQ-ITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSC-CCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccCchh--hhccCCCCEEEccCCc-CCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence 44444444444444431 2244445555554443 333333 244444555555544444443 34444445555554
Q ss_pred cccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecC
Q 042574 578 WCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFG 649 (929)
Q Consensus 578 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 649 (929)
+|. +..++.+..+++|++|++++|.++.++. +..+++|++|++++|.++.+++ +.++++|+.|++++|
T Consensus 116 ~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 116 STQ-ITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183 (308)
T ss_dssp TSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CCC-CCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCC
Confidence 442 2333344444445555554444444433 4444444555554444444433 344444444444433
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.54 E-value=5.9e-14 Score=148.10 Aligned_cols=150 Identities=31% Similarity=0.445 Sum_probs=72.1
Q ss_pred cccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcc-ccccccccee
Q 042574 496 EENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSS-VSNLTNLRSL 574 (929)
Q Consensus 496 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L 574 (929)
.+++++|++++|.+..++ .+..+++|++|++++|. +..++...|.++++|++|++++|.++.+|.. ++.+++|++|
T Consensus 62 l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp CTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence 344555555555544432 12344555555555554 3344444344555555555555555544332 3445555555
Q ss_pred ecccccccccCc--cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecC
Q 042574 575 LLRWCRRLKRVP--SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFG 649 (929)
Q Consensus 575 ~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 649 (929)
++++|. +..+| .++.+++|++|++++|.++.+|.. +.++++|++|++++|.++.+++..+.++++|+.|++++|
T Consensus 139 ~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 139 NLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 555542 22222 244555555555555555544433 344555555555555555554444455555555555443
No 86
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.54 E-value=1.8e-15 Score=179.53 Aligned_cols=352 Identities=14% Similarity=0.097 Sum_probs=158.6
Q ss_pred ccccEEEcccCCCCcCC-CCCCCCCCcccEEEcccCCcCcc-CcHHHHccCCCCcEEEecCCCCcc-----cCccccccc
Q 042574 497 ENLERVSLMDNHIEEIP-SNMSPHCKILSTLLLQRNGYLQR-IPECFFMHMRGLKVLNLSHTNIEV-----LPSSVSNLT 569 (929)
Q Consensus 497 ~~l~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~ 569 (929)
+++++|+++++.+.... ..+...+++|++|++.+|..+.. ....++.++++|++|++++|.++. ++.....++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 35666666666544211 11112356677777766632322 122233456677777776666442 222223555
Q ss_pred ccceeeccccc-ccc--cCcc-ccccCCCCEEEccCC-CCccccccccCCCCCCEEEccCCC------------------
Q 042574 570 NLRSLLLRWCR-RLK--RVPS-VAKLLALQYLDLERT-WIEEVPEGMEMLENLSHLYLSSPP------------------ 626 (929)
Q Consensus 570 ~L~~L~l~~~~-~~~--~~~~-~~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~l~~~~------------------ 626 (929)
+|++|++++|. .+. .++. +.++++|++|++++| .+..+|..+.++++|++|++..+.
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 66666666654 111 1111 234566666666666 444555555555566666543331
Q ss_pred --------CccCCCC----ccCCCCCccEEEeecCCchhcccHHH-HhcccccccEeEEEecccccchhcccccCCCCce
Q 042574 627 --------LKKFPTG----ILPRLRNLYKLKLSFGNEALRETVEE-AARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSK 693 (929)
Q Consensus 627 --------~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~-l~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~ 693 (929)
+...... .+..+++|++|+++++. .....+.. +..+. +|+.|.+... ........-....+.|+
T Consensus 265 ~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~-~L~~L~l~~~-~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCP-KLQRLWVLDY-IEDAGLEVLASTCKDLR 341 (594)
T ss_dssp TTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCT-TCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred CCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCC-CcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence 0001000 11234566666666554 22222222 33444 5666655432 11100000001123344
Q ss_pred eEEEEec---------cccccc--ccccCcCCCceeEeecccccCCC-Ccc-cCcccccceeee-----cccCccccccc
Q 042574 694 HYCLLLS---------AYRMGA--FMITGLELPKSVILNNYKICRGE-EPI-VLPEDVQFLRMF-----EVSDVASLNDV 755 (929)
Q Consensus 694 ~l~~~~~---------~~~~~~--~~~~~~~~~~~l~L~~~~~~~~~-~~~-~~~~~L~~L~i~-----~~~~~~~l~~~ 755 (929)
.+.+..+ ...... ......+.++.+.+....+.... ..+ ..+++|+.|++. +|..++..+
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~-- 419 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP-- 419 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC--
T ss_pred EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc--
Confidence 4443211 000000 00001233444433222221111 111 135667777776 333333110
Q ss_pred CccccCccc-ccccccceeEEEEecCCCccccchhchhhhcCCccEEEEecCcchhhhhccCcchhhhhhcccccccccc
Q 042574 756 LPREQGLVN-IGKFSHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDSIKEIIAVEDEETEKELATNTIINTVT 834 (929)
Q Consensus 756 ~~~~~~l~~-l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 834 (929)
....+.. +..++ +|+.|++++ .+++.........+++|+.|++++|. ++.... . .....
T Consensus 420 --~~~~~~~l~~~~~-~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~-------~-------~l~~~ 479 (594)
T 2p1m_B 420 --LDIGFGAIVEHCK-DLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGM-------H-------HVLSG 479 (594)
T ss_dssp --THHHHHHHHHHCT-TCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHH-------H-------HHHHH
T ss_pred --hhhHHHHHHhhCC-CccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHH-------H-------HHHhc
Confidence 0001111 23455 777777755 44442221122247778888888774 221100 0 00124
Q ss_pred CCCcceeecccccccccccccCccccCCCccEEEEeccCC
Q 042574 835 LPRLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCPK 874 (929)
Q Consensus 835 ~p~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~~ 874 (929)
+|+|+.|+|++|+. ...........+++|++|++++|+.
T Consensus 480 ~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 480 CDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 89999999999875 3332211334578999999999975
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.54 E-value=5.7e-14 Score=149.41 Aligned_cols=178 Identities=25% Similarity=0.299 Sum_probs=148.6
Q ss_pred cccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceee
Q 042574 496 EENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLL 575 (929)
Q Consensus 496 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~ 575 (929)
.++++.++++++.+..+|..+. ++++.|++++|. +..++...|.++++|++|++++|.++.+|.. +.+++|++|+
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP---KDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred cCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 4578999999999999987664 689999999998 6666666678999999999999999988764 8899999999
Q ss_pred cccccccccCc-cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCCchh
Q 042574 576 LRWCRRLKRVP-SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGNEAL 653 (929)
Q Consensus 576 l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 653 (929)
+++|. +..+| .+..+++|++|++++|.++.+|.. +.++++|++|++++|.++.++++.+.++++|+.|++++|...
T Consensus 84 Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~- 161 (290)
T 1p9a_G 84 LSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT- 161 (290)
T ss_dssp CCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-
T ss_pred CCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-
Confidence 99984 56777 689999999999999999999854 899999999999999999999998999999999999977532
Q ss_pred cccHHHHhcccccccEeEEEecccccch
Q 042574 654 RETVEEAARLSDGLDSFEGHFSELKDFN 681 (929)
Q Consensus 654 ~~~~~~l~~l~~~L~~L~~~~~~l~~l~ 681 (929)
......+..+. +|+.|.+....+..++
T Consensus 162 ~l~~~~~~~l~-~L~~L~L~~N~l~~ip 188 (290)
T 1p9a_G 162 ELPAGLLNGLE-NLDTLLLQENSLYTIP 188 (290)
T ss_dssp CCCTTTTTTCT-TCCEEECCSSCCCCCC
T ss_pred ccCHHHhcCcC-CCCEEECCCCcCCccC
Confidence 22222345567 8888888766665443
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=2.3e-14 Score=157.21 Aligned_cols=166 Identities=17% Similarity=0.200 Sum_probs=124.5
Q ss_pred EEcCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcE-EEecCCCC
Q 042574 480 VKAGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKV-LNLSHTNI 558 (929)
Q Consensus 480 ~~~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~-L~l~~~~i 558 (929)
...+.+++++|... +.++++|++++|.++.+|...|.++++|++|++++|...+.+|...|.++++|.. +.+.+|.+
T Consensus 15 ~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 15 LCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp EEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred EecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 44566778888753 5688999999999999988888889999999999988667777777788887665 56677888
Q ss_pred cccC-cccccccccceeecccccccccCc--cccccCCCCEEEccCC-CCcccccc-ccCC-CCCCEEEccCCCCccCCC
Q 042574 559 EVLP-SSVSNLTNLRSLLLRWCRRLKRVP--SVAKLLALQYLDLERT-WIEEVPEG-MEML-ENLSHLYLSSPPLKKFPT 632 (929)
Q Consensus 559 ~~lp-~~i~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~-~i~~lp~~-i~~l-~~L~~L~l~~~~~~~~~~ 632 (929)
+.+| ..+..+++|++|++++|. +..+| .+....++..|++.++ .+..+|.. +..+ ..++.|++++|.++.++.
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~ 171 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN 171 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT
T ss_pred cccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh
Confidence 8774 557889999999998874 44444 4556667788888765 77777764 4444 468889999998888887
Q ss_pred CccCCCCCccEEEeecC
Q 042574 633 GILPRLRNLYKLKLSFG 649 (929)
Q Consensus 633 ~~l~~l~~L~~L~l~~~ 649 (929)
+.+ ...+|++|++..+
T Consensus 172 ~~f-~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 172 SAF-NGTQLDELNLSDN 187 (350)
T ss_dssp TSS-TTEEEEEEECTTC
T ss_pred hhc-cccchhHHhhccC
Confidence 754 4566777777643
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.54 E-value=9.7e-14 Score=149.20 Aligned_cols=183 Identities=21% Similarity=0.302 Sum_probs=151.9
Q ss_pred cCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCccc
Q 042574 482 AGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVL 561 (929)
Q Consensus 482 ~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l 561 (929)
.+..+..+| .....++++.|++++|.+..++. +..+++|++|++++|. +..++. +..+++|++|++++|.++.+
T Consensus 49 ~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~~ 122 (308)
T 1h6u_A 49 FGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP-LKNVSA--IAGLQSIKTLDLTSTQITDV 122 (308)
T ss_dssp TTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC-CSCCGG--GTTCTTCCEEECTTSCCCCC
T ss_pred eCCCccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc-CCCchh--hcCCCCCCEEECCCCCCCCc
Confidence 444556666 34567899999999999998876 5689999999999997 666663 58899999999999999988
Q ss_pred CcccccccccceeecccccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCc
Q 042574 562 PSSVSNLTNLRSLLLRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNL 641 (929)
Q Consensus 562 p~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 641 (929)
|. +..+++|++|++++| .+..++.+..+++|++|++++|.++.++. +..+++|++|++++|.++.+++ +..+++|
T Consensus 123 ~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L 197 (308)
T 1h6u_A 123 TP-LAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP--LASLPNL 197 (308)
T ss_dssp GG-GTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTC
T ss_pred hh-hcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh--hcCCCCC
Confidence 75 899999999999998 45666679999999999999999999887 8999999999999999998876 7899999
Q ss_pred cEEEeecCCchhcccHHHHhcccccccEeEEEeccccc
Q 042574 642 YKLKLSFGNEALRETVEEAARLSDGLDSFEGHFSELKD 679 (929)
Q Consensus 642 ~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~~l~~ 679 (929)
++|++++|...... .+..+. +|+.|.+....+..
T Consensus 198 ~~L~L~~N~l~~~~---~l~~l~-~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 198 IEVHLKNNQISDVS---PLANTS-NLFIVTLTNQTITN 231 (308)
T ss_dssp CEEECTTSCCCBCG---GGTTCT-TCCEEEEEEEEEEC
T ss_pred CEEEccCCccCccc---cccCCC-CCCEEEccCCeeec
Confidence 99999977533222 356677 88888876655443
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.53 E-value=2.3e-14 Score=148.22 Aligned_cols=167 Identities=14% Similarity=0.135 Sum_probs=143.3
Q ss_pred cCcccccCCC-cccccccccEEEcccCC-CCcCCCCCCCCCCcccEEEccc-CCcCccCcHHHHccCCCCcEEEecCCCC
Q 042574 482 AGLRLLKFPG-EQEWEENLERVSLMDNH-IEEIPSNMSPHCKILSTLLLQR-NGYLQRIPECFFMHMRGLKVLNLSHTNI 558 (929)
Q Consensus 482 ~~~~l~~~p~-~~~~~~~l~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~i 558 (929)
.+.++..+|. .....+++++|++++|. +..++...+..+++|++|++++ |. +..++...|.++++|++|++++|.+
T Consensus 39 ~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~L~l~~n~l 117 (239)
T 2xwt_C 39 IETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLKFLGIFNTGL 117 (239)
T ss_dssp ESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEECCTTCCEEEEEEECC
T ss_pred eCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCCEEeCCCCCC
Confidence 3445556655 34457889999999997 9999887788999999999998 65 7788877778999999999999999
Q ss_pred cccCcccccccccc---eeecccccccccCc--cccccCCCC-EEEccCCCCccccccccCCCCCCEEEccCCC-CccCC
Q 042574 559 EVLPSSVSNLTNLR---SLLLRWCRRLKRVP--SVAKLLALQ-YLDLERTWIEEVPEGMEMLENLSHLYLSSPP-LKKFP 631 (929)
Q Consensus 559 ~~lp~~i~~l~~L~---~L~l~~~~~~~~~~--~~~~l~~L~-~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~-~~~~~ 631 (929)
+.+|. +..+++|+ +|++++|..+..+| .+..+++|+ +|++++|.++.+|......++|++|++++|. ++.++
T Consensus 118 ~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~ 196 (239)
T 2xwt_C 118 KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVID 196 (239)
T ss_dssp CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEEC
T ss_pred ccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCC
Confidence 99987 88888888 99999985666666 489999999 9999999999999876566899999999995 99998
Q ss_pred CCccCCC-CCccEEEeecCC
Q 042574 632 TGILPRL-RNLYKLKLSFGN 650 (929)
Q Consensus 632 ~~~l~~l-~~L~~L~l~~~~ 650 (929)
+..+.++ ++|+.|++++|.
T Consensus 197 ~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 197 KDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp TTTTTTCSBCCSEEECTTCC
T ss_pred HHHhhccccCCcEEECCCCc
Confidence 8888999 999999999764
No 91
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.53 E-value=7.5e-14 Score=142.99 Aligned_cols=147 Identities=27% Similarity=0.356 Sum_probs=128.1
Q ss_pred ccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcc-cccccccceeecc
Q 042574 499 LERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSS-VSNLTNLRSLLLR 577 (929)
Q Consensus 499 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~ 577 (929)
.+.++.+++.+..+|..+. ++|++|++++|. +..++...|.++++|++|+|++|.++.+|.. +..+++|++|+++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~---~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP---TNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC---TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCccCCCCC---CCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 5678888888999987653 789999999997 6666555568999999999999999988755 5899999999999
Q ss_pred cccccccCc--cccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCC
Q 042574 578 WCRRLKRVP--SVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGN 650 (929)
Q Consensus 578 ~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 650 (929)
+|. ++.++ .+..+++|++|++++|.++.+|..+.++++|++|++++|.++.++...+..+++|+.|++++|.
T Consensus 97 ~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 97 TNQ-LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp SSC-CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCc-CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 985 45555 4789999999999999999999999999999999999999999998889999999999999775
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.52 E-value=7e-14 Score=148.87 Aligned_cols=170 Identities=22% Similarity=0.264 Sum_probs=136.5
Q ss_pred ccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCccccccccccee
Q 042574 495 WEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSL 574 (929)
Q Consensus 495 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L 574 (929)
..++++.|++++|.+..++. +..+++|++|++++|. +..++. +.++++|++|++++|.++.+|. +..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK-LTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCc-cCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 35678999999998888754 4578999999999987 666666 5789999999999999888764 8889999999
Q ss_pred ecccccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCCchhc
Q 042574 575 LLRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGNEALR 654 (929)
Q Consensus 575 ~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 654 (929)
++++| .+..++.+..+++|++|++++|.++.+ ..+..+++|++|++++|.++.+++ +.++++|+.|++++|....
T Consensus 118 ~L~~n-~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~- 192 (291)
T 1h6t_A 118 SLEHN-GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD- 192 (291)
T ss_dssp ECTTS-CCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-
T ss_pred ECCCC-cCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-
Confidence 99987 456667888999999999999988887 468889999999999999888766 7889999999998775322
Q ss_pred ccHHHHhcccccccEeEEEecccc
Q 042574 655 ETVEEAARLSDGLDSFEGHFSELK 678 (929)
Q Consensus 655 ~~~~~l~~l~~~L~~L~~~~~~l~ 678 (929)
+..+..+. +|+.|.+....+.
T Consensus 193 --l~~l~~l~-~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 193 --LRALAGLK-NLDVLELFSQECL 213 (291)
T ss_dssp --CGGGTTCT-TCSEEEEEEEEEE
T ss_pred --ChhhccCC-CCCEEECcCCccc
Confidence 23466677 7888877655443
No 93
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=9e-14 Score=141.35 Aligned_cols=146 Identities=26% Similarity=0.404 Sum_probs=126.3
Q ss_pred cEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCccc-Ccccccccccceeeccc
Q 042574 500 ERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVL-PSSVSNLTNLRSLLLRW 578 (929)
Q Consensus 500 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~ 578 (929)
+.++.+++.+..+|..+. ++|+.|++++|. +..++...|..+++|++|+|++|.++.+ |..+.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~~iP~~l~---~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP---ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCSSCC---TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCCccC---cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 568888888888887653 689999999997 6777776678999999999999999976 77899999999999999
Q ss_pred ccccccCc--cccccCCCCEEEccCCCCccccc-cccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCC
Q 042574 579 CRRLKRVP--SVAKLLALQYLDLERTWIEEVPE-GMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGN 650 (929)
Q Consensus 579 ~~~~~~~~--~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 650 (929)
|. ++.+| .+..+++|++|++++|.+..++. .+..+++|++|++++|.++.+++..+..+++|++|++++|.
T Consensus 90 N~-l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 90 NK-ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred Cc-CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 85 45555 37889999999999999998854 58899999999999999999998888999999999999775
No 94
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.51 E-value=1.2e-15 Score=174.98 Aligned_cols=352 Identities=15% Similarity=0.122 Sum_probs=206.5
Q ss_pred cccccEEEcccCCCCcCCC-CCCCCCCcccEEEcccCCcCc----cCcHHHHccCCCCcEEEecCCCCcc-cCccc-ccc
Q 042574 496 EENLERVSLMDNHIEEIPS-NMSPHCKILSTLLLQRNGYLQ----RIPECFFMHMRGLKVLNLSHTNIEV-LPSSV-SNL 568 (929)
Q Consensus 496 ~~~l~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~l~~L~~L~l~~~~i~~-lp~~i-~~l 568 (929)
++++++|++++|.+...+. .++..+++|++|++++|.... .++.. +..+++|++|++++|.+.. .+..+ ..+
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHH-HHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 3578999999998765432 224578899999999997322 23443 4778999999999999874 23333 334
Q ss_pred c----ccceeecccccccc----cCc-cccccCCCCEEEccCCCCccc-cc----c-ccCCCCCCEEEccCCCCccCC--
Q 042574 569 T----NLRSLLLRWCRRLK----RVP-SVAKLLALQYLDLERTWIEEV-PE----G-MEMLENLSHLYLSSPPLKKFP-- 631 (929)
Q Consensus 569 ~----~L~~L~l~~~~~~~----~~~-~~~~l~~L~~L~l~~~~i~~l-p~----~-i~~l~~L~~L~l~~~~~~~~~-- 631 (929)
. +|++|++++|.... .++ .+.++++|++|++++|.+... +. . ....++|++|++++|.++...
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 4 69999999986432 345 588999999999999987632 22 2 223568999999999887533
Q ss_pred --CCccCCCCCccEEEeecCCchhcccHHHHhc-----ccccccEeEEEecccccchhcccccCCCCceeEEEEeccccc
Q 042574 632 --TGILPRLRNLYKLKLSFGNEALRETVEEAAR-----LSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRM 704 (929)
Q Consensus 632 --~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-----l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~ 704 (929)
...+..+++|++|++++|. .....+..+.. .. +|+.|.+....+.......-
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~-~L~~L~L~~n~l~~~~~~~l------------------- 219 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPC-QLEALKLESCGVTSDNCRDL------------------- 219 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCC-CCCEEECTTSCCBTTHHHHH-------------------
T ss_pred HHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCC-CceEEEccCCCCcHHHHHHH-------------------
Confidence 2235678999999999775 33333333322 44 78888776554433110000
Q ss_pred ccccccCcCCCceeEeecccccCCC------CcccCcccccceeeecccCcccccccCcccc-CcccccccccceeEEEE
Q 042574 705 GAFMITGLELPKSVILNNYKICRGE------EPIVLPEDVQFLRMFEVSDVASLNDVLPREQ-GLVNIGKFSHDLKVLSF 777 (929)
Q Consensus 705 ~~~~~~~~~~~~~l~L~~~~~~~~~------~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~-~l~~l~~~~~~L~~L~L 777 (929)
.......+.++.+.++.+.+...+ .....+++|+.|.+.+|. +.... .. -...+..++ +|++|++
T Consensus 220 -~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~-----~~~l~~~l~~~~-~L~~L~L 291 (461)
T 1z7x_W 220 -CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKG-----CGDLCRVLRAKE-SLKELSL 291 (461)
T ss_dssp -HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHH-----HHHHHHHHHHCT-TCCEEEC
T ss_pred -HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHH-----HHHHHHHHhhCC-CcceEEC
Confidence 000001223444555444332211 011236788888888873 22100 00 011233466 8999999
Q ss_pred ecCCCccccchhchhh----hcCCccEEEEecCcchhhhhccCcchhhhhhccccccccccCCCcceeeccccccccccc
Q 042574 778 VHCHNLKNLFSLWLLP----ALQNLEVLKVYGCDSIKEIIAVEDEETEKELATNTIINTVTLPRLKKLRFYFLREFKRFC 853 (929)
Q Consensus 778 ~~c~~l~~l~~~~~l~----~L~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i~ 853 (929)
++| .+++........ ..++|++|++++|. ++.... .... .....+++|+.|+++++ .+.+..
T Consensus 292 s~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~---~~l~--------~~l~~~~~L~~L~Ls~n-~i~~~~ 357 (461)
T 1z7x_W 292 AGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACC---SHFS--------SVLAQNRFLLELQISNN-RLEDAG 357 (461)
T ss_dssp TTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGH---HHHH--------HHHHHCSSCCEEECCSS-BCHHHH
T ss_pred CCC-CCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHH---HHHH--------HHHhhCCCccEEEccCC-cccccc
Confidence 986 444432211111 23689999999884 322100 0000 11224799999999987 455432
Q ss_pred ccC---ccc-cCCCccEEEEeccCCCc-----cccCCC---CccCCCCCCC
Q 042574 854 SNN---GVL-VCNSLQEIKVRGCPKLK-----RLSLSL---PLLDNGQPSP 892 (929)
Q Consensus 854 ~~~---~~~-~~p~L~~L~I~~C~~L~-----~lP~~l---~~l~~~~~~~ 892 (929)
... ... ..++|++|++++| +++ .+|..+ ++|+.+++..
T Consensus 358 ~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~ 407 (461)
T 1z7x_W 358 VRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSN 407 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCS
T ss_pred HHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCC
Confidence 100 111 2679999999999 476 566543 3444444333
No 95
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.51 E-value=1.2e-13 Score=145.58 Aligned_cols=174 Identities=24% Similarity=0.324 Sum_probs=141.5
Q ss_pred ccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcc-cccccccce
Q 042574 495 WEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSS-VSNLTNLRS 573 (929)
Q Consensus 495 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~ 573 (929)
..++++.|++.+|.+..++. +..+++|++|++++|. +..++ . +..+++|++|++++|.++.+|.. ++.+++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~-l~~~~-~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNK-LHDIS-A-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSC-CCCCG-G-GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccceeeeeeCCCCcccccc--cccCCCCcEEECCCCC-CCCch-h-hcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 35679999999999887754 4579999999999997 55555 2 58999999999999999987655 689999999
Q ss_pred eecccccccccCc-cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCCc
Q 042574 574 LLLRWCRRLKRVP-SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGNE 651 (929)
Q Consensus 574 L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 651 (929)
|++++|......+ .++.+++|++|++++|.++.+|.. +.++++|++|++++|.++.+++..++++++|++|+++.|..
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 9999986544444 489999999999999999988876 68999999999999999999988889999999999997753
Q ss_pred hhcccHHHHhcccccccEeEEEec
Q 042574 652 ALRETVEEAARLSDGLDSFEGHFS 675 (929)
Q Consensus 652 ~~~~~~~~l~~l~~~L~~L~~~~~ 675 (929)
. ......+..+. +|+.|.+...
T Consensus 194 ~-~~~~~~~~~l~-~L~~L~l~~N 215 (272)
T 3rfs_A 194 K-SVPDGVFDRLT-SLQYIWLHDN 215 (272)
T ss_dssp S-CCCTTTTTTCT-TCCEEECCSS
T ss_pred C-ccCHHHHhCCc-CCCEEEccCC
Confidence 2 22223345566 7777766543
No 96
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=1.4e-13 Score=139.85 Aligned_cols=149 Identities=19% Similarity=0.233 Sum_probs=127.7
Q ss_pred ccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccC-cHHHHccCCCCcEEEecCCCCcccCc-ccccccccceeec
Q 042574 499 LERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRI-PECFFMHMRGLKVLNLSHTNIEVLPS-SVSNLTNLRSLLL 576 (929)
Q Consensus 499 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l 576 (929)
.+.+++++|.+..+|..+. +.++.|++++|. +..+ +..+|..+++|++|++++|.++.++. .+..+++|++|++
T Consensus 13 ~~~l~~s~n~l~~iP~~~~---~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP---QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC---TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEeEeCCCCcccCccCCC---CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 3579999999999987653 467899999998 5555 55556899999999999999998765 7899999999999
Q ss_pred ccccccccCc-cccccCCCCEEEccCCCCccc-cccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCCc
Q 042574 577 RWCRRLKRVP-SVAKLLALQYLDLERTWIEEV-PEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGNE 651 (929)
Q Consensus 577 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 651 (929)
++|......+ .+..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+++..+..+++|+.|++++|..
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 9986544444 489999999999999999988 45689999999999999999999888899999999999997753
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=1.2e-13 Score=138.07 Aligned_cols=149 Identities=13% Similarity=0.151 Sum_probs=128.6
Q ss_pred cccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcc-cCcccccccccc
Q 042574 494 EWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEV-LPSSVSNLTNLR 572 (929)
Q Consensus 494 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~ 572 (929)
...+++++|++++|.+..++ . +..+++|++|++++|. +..++ . +..+++|++|++++|.++. .|..++.+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~-l~~l~~L~~L~l~~n~-~~~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-G-IEYAHNIKDLTINNIH-ATNYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-T-GGGCTTCSEEEEESCC-CSCCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCccChH-H-HhcCCCCCEEEccCCC-CCcch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 34568999999999999887 3 4589999999999995 66555 2 5789999999999999984 688899999999
Q ss_pred eeecccccccccCc-cccccCCCCEEEccCCC-CccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCC
Q 042574 573 SLLLRWCRRLKRVP-SVAKLLALQYLDLERTW-IEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGN 650 (929)
Q Consensus 573 ~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 650 (929)
+|++++|......| .++.+++|++|++++|. +..+| .+.++++|++|++++|.++.++ .+.++++|++|++++|.
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC-
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcc
Confidence 99999986655455 69999999999999997 88887 6899999999999999999877 37899999999999774
No 98
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.50 E-value=5.8e-15 Score=175.06 Aligned_cols=380 Identities=16% Similarity=0.134 Sum_probs=198.1
Q ss_pred cccccEEEcccCC-CCcC---CCCC-----------CCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCC-CCc
Q 042574 496 EENLERVSLMDNH-IEEI---PSNM-----------SPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHT-NIE 559 (929)
Q Consensus 496 ~~~l~~L~l~~~~-~~~~---~~~~-----------~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~i~ 559 (929)
.++++.|++.++. +..+ |..+ ...+++|+.|++++|......+..+...+++|++|++++| .++
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC
Confidence 3568899998874 2211 1111 2357899999999987444444444346899999999998 455
Q ss_pred c--cCcccccccccceeeccccccccc----Ccc-ccccCCCCEEEccCCC--Cc--cccccccCCCCCCEEEccCC-CC
Q 042574 560 V--LPSSVSNLTNLRSLLLRWCRRLKR----VPS-VAKLLALQYLDLERTW--IE--EVPEGMEMLENLSHLYLSSP-PL 627 (929)
Q Consensus 560 ~--lp~~i~~l~~L~~L~l~~~~~~~~----~~~-~~~l~~L~~L~l~~~~--i~--~lp~~i~~l~~L~~L~l~~~-~~ 627 (929)
. ++..+.++++|++|++++|..... ++. ...+++|++|++++|. +. .++..+.++++|++|++++| .+
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 224 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPL 224 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCH
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcH
Confidence 3 555556889999999999863221 222 3467799999999886 32 23333456799999999988 34
Q ss_pred ccCCCCccCCCCCccEEEeecCCc-h----hcccHHHHhcccccccEeE-EEecccccchhcccccCCCCceeEEEEecc
Q 042574 628 KKFPTGILPRLRNLYKLKLSFGNE-A----LRETVEEAARLSDGLDSFE-GHFSELKDFNIYVKSTDGRGSKHYCLLLSA 701 (929)
Q Consensus 628 ~~~~~~~l~~l~~L~~L~l~~~~~-~----~~~~~~~l~~l~~~L~~L~-~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~ 701 (929)
..++ ..+.++++|++|++..+.. . .......+..+. +|+.+. +.......+.... .....|+.+.+..+.
T Consensus 225 ~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~-~L~~Ls~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~ 300 (594)
T 2p1m_B 225 EKLA-TLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCK-ELRCLSGFWDAVPAYLPAVY--SVCSRLTTLNLSYAT 300 (594)
T ss_dssp HHHH-HHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCT-TCCEEECCBTCCGGGGGGGH--HHHTTCCEEECTTCC
T ss_pred HHHH-HHHhcCCcceEcccccccCccchhhHHHHHHHHhcCC-CcccccCCcccchhhHHHHH--HhhCCCCEEEccCCC
Confidence 4433 3357788999998764321 0 111123455566 777663 1111111111100 022455555554443
Q ss_pred cccccc--cccCcCCCceeEeecccccCCC-Cc-ccCcccccceeeecc--------cCcccccccCccccCccccc-cc
Q 042574 702 YRMGAF--MITGLELPKSVILNNYKICRGE-EP-IVLPEDVQFLRMFEV--------SDVASLNDVLPREQGLVNIG-KF 768 (929)
Q Consensus 702 ~~~~~~--~~~~~~~~~~l~L~~~~~~~~~-~~-~~~~~~L~~L~i~~~--------~~~~~l~~~~~~~~~l~~l~-~~ 768 (929)
...... .....+.++.+.+.++ +.... .. ...+++|+.|++.+| ..++. ..+..+. .+
T Consensus 301 l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~--------~~l~~l~~~~ 371 (594)
T 2p1m_B 301 VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE--------QGLVSVSMGC 371 (594)
T ss_dssp CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH--------HHHHHHHHHC
T ss_pred CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH--------HHHHHHHHhc
Confidence 221111 1123455777777665 22111 11 123567888877543 11111 1111111 24
Q ss_pred ccceeEEEEecCCCccccchhchhhhcCCccEEEEe-----cCcchhhhhccCcchhhhhhcc------------ccc--
Q 042574 769 SHDLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVY-----GCDSIKEIIAVEDEETEKELAT------------NTI-- 829 (929)
Q Consensus 769 ~~~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~-----~c~~l~~i~~~~~~~~~~~~~~------------~~~-- 829 (929)
+ +|+.| ..+|+.+++.........+++|+.|+++ +|+.++..+... ........ ...
T Consensus 372 ~-~L~~L-~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~--~~~~l~~~~~~L~~L~L~~~l~~~~ 447 (594)
T 2p1m_B 372 P-KLESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI--GFGAIVEHCKDLRRLSLSGLLTDKV 447 (594)
T ss_dssp T-TCCEE-EEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH--HHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred h-hHHHH-HHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhh--HHHHHHhhCCCccEEeecCcccHHH
Confidence 4 66666 3344555443222222346666666666 444444211000 00000000 000
Q ss_pred --cccccCCCcceeecccccccccccccCccccCCCccEEEEeccCCCccc-----cCCCCccCCCCCCCCC
Q 042574 830 --INTVTLPRLKKLRFYFLREFKRFCSNNGVLVCNSLQEIKVRGCPKLKRL-----SLSLPLLDNGQPSPPP 894 (929)
Q Consensus 830 --~~~~~~p~L~~L~l~~~~~L~~i~~~~~~~~~p~L~~L~I~~C~~L~~l-----P~~l~~l~~~~~~~~~ 894 (929)
.....+++|+.|++++|. +.+.........+|+|++|++++|+. ... -..+++|+.+++..|+
T Consensus 448 ~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 448 FEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSC
T ss_pred HHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCC
Confidence 000126778888887765 32221100113479999999999985 321 1234566666666664
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.48 E-value=5.5e-14 Score=154.87 Aligned_cols=167 Identities=26% Similarity=0.288 Sum_probs=111.9
Q ss_pred EcCcccccCCCcccccccccEEEcccCCCCcCCCCCCC-CCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCc
Q 042574 481 KAGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSP-HCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIE 559 (929)
Q Consensus 481 ~~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 559 (929)
..+.++..+|.. ....++.|++++|.+..++...+. .+++|++|++++|. +..++...|.++++|++|+|++|.++
T Consensus 25 c~~~~l~~iP~~--~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (361)
T 2xot_A 25 CSKQQLPNVPQS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLH 101 (361)
T ss_dssp CCSSCCSSCCSS--CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred eCCCCcCccCcc--CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCC
Confidence 344556666653 345677777777777777666665 67777777777776 55666555577777777777777777
Q ss_pred ccCc-ccccccccceeecccccccccCc-cccccCCCCEEEccCCCCccccccc----cCCCCCCEEEccCCCCccCCCC
Q 042574 560 VLPS-SVSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIEEVPEGM----EMLENLSHLYLSSPPLKKFPTG 633 (929)
Q Consensus 560 ~lp~-~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~~i----~~l~~L~~L~l~~~~~~~~~~~ 633 (929)
.+|. .+..+++|++|+|++|......| .+..+++|++|+|++|.++.+|..+ ..+++|++|++++|.++.++..
T Consensus 102 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 181 (361)
T 2xot_A 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHH
T ss_pred cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH
Confidence 6654 46777777777777765443334 5777777777777777777777654 4577777777777777777665
Q ss_pred ccCCCCC--ccEEEeecCC
Q 042574 634 ILPRLRN--LYKLKLSFGN 650 (929)
Q Consensus 634 ~l~~l~~--L~~L~l~~~~ 650 (929)
.+..++. |+.|++.+|.
T Consensus 182 ~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 182 DLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp HHHHSCHHHHTTEECCSSC
T ss_pred HhhhccHhhcceEEecCCC
Confidence 5566665 3667776554
No 100
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.47 E-value=4.8e-15 Score=159.92 Aligned_cols=241 Identities=20% Similarity=0.186 Sum_probs=152.2
Q ss_pred ccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCc-CccCcHHHH------ccCCCCcEEEecCCCCc-ccCccc--c
Q 042574 497 ENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGY-LQRIPECFF------MHMRGLKVLNLSHTNIE-VLPSSV--S 566 (929)
Q Consensus 497 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~------~~l~~L~~L~l~~~~i~-~lp~~i--~ 566 (929)
.+++.+++++|.+ .+|..+.. .|+.|++++|.. ...+|..+. .++++|++|++++|.++ .+|..+ +
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CCceeEeeccccc-ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 4567777777777 66654432 277778877763 123454431 15788888888888887 677765 7
Q ss_pred cccccceeecccccccccCc-ccccc-----CCCCEEEccCCCCcccc-ccccCCCCCCEEEccCCCCccC---CCC-cc
Q 042574 567 NLTNLRSLLLRWCRRLKRVP-SVAKL-----LALQYLDLERTWIEEVP-EGMEMLENLSHLYLSSPPLKKF---PTG-IL 635 (929)
Q Consensus 567 ~l~~L~~L~l~~~~~~~~~~-~~~~l-----~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~---~~~-~l 635 (929)
.+++|++|++++|..... | .++.+ ++|++|++++|.+..+| ..+.++++|++|++++|.+... +.. .+
T Consensus 119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 888888888888754444 5 46665 78888888888888776 4578888888888888875431 211 13
Q ss_pred CCCCCccEEEeecCCchhcccH--HHHhcccccccEeEEEecccccchhcccccCCCCceeEEEEecccccccccccCcC
Q 042574 636 PRLRNLYKLKLSFGNEALRETV--EEAARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMITGLE 713 (929)
Q Consensus 636 ~~l~~L~~L~l~~~~~~~~~~~--~~l~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 713 (929)
.++++|++|++++|.......+ .-...+. +|+.|+++...+.....
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~------------------------------- 245 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARV-QLQGLDLSHNSLRDAAG------------------------------- 245 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTC-CCSEEECTTSCCCSSCC-------------------------------
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCC-CCCEEECCCCcCCcccc-------------------------------
Confidence 6788888888886653211111 2223456 77777765443322110
Q ss_pred CCceeEeecccccCCCCcccCcccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchhh
Q 042574 714 LPKSVILNNYKICRGEEPIVLPEDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLP 793 (929)
Q Consensus 714 ~~~~l~L~~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~ 793 (929)
......+++|+.|.+.++.- +.++ ..+ ++ +|++|+++++ +++.+|. +.
T Consensus 246 ---------------~~~~~~l~~L~~L~Ls~N~l-~~ip---------~~~--~~-~L~~L~Ls~N-~l~~~p~---~~ 293 (312)
T 1wwl_A 246 ---------------APSCDWPSQLNSLNLSFTGL-KQVP---------KGL--PA-KLSVLDLSYN-RLDRNPS---PD 293 (312)
T ss_dssp ---------------CSCCCCCTTCCEEECTTSCC-SSCC---------SSC--CS-EEEEEECCSS-CCCSCCC---TT
T ss_pred ---------------hhhhhhcCCCCEEECCCCcc-Chhh---------hhc--cC-CceEEECCCC-CCCCChh---Hh
Confidence 00122345677777777642 2221 111 14 8999999985 6777644 56
Q ss_pred hcCCccEEEEecC
Q 042574 794 ALQNLEVLKVYGC 806 (929)
Q Consensus 794 ~L~~L~~L~i~~c 806 (929)
.+++|++|+++++
T Consensus 294 ~l~~L~~L~L~~N 306 (312)
T 1wwl_A 294 ELPQVGNLSLKGN 306 (312)
T ss_dssp TSCEEEEEECTTC
T ss_pred hCCCCCEEeccCC
Confidence 7888999999875
No 101
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.46 E-value=2.6e-14 Score=156.14 Aligned_cols=150 Identities=17% Similarity=0.173 Sum_probs=99.9
Q ss_pred ccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCcc-CcHHHHccCCCCcEEEecCCCCc-ccCccccccccccee
Q 042574 497 ENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQR-IPECFFMHMRGLKVLNLSHTNIE-VLPSSVSNLTNLRSL 574 (929)
Q Consensus 497 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L 574 (929)
.+++.+++.+|.+...+...+ .+++|++|++++|..... ++. .+..+++|++|++++|.++ ..|..++.+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~-~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCC-CCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchhhc-cCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 457778888777766655544 678888888888763322 333 3477888888888888776 556677778888888
Q ss_pred eccccccccc--Cc-cccccCCCCEEEccCC-CCcc--ccccccCCC-CCCEEEccCCC--Cc--cCCCCccCCCCCccE
Q 042574 575 LLRWCRRLKR--VP-SVAKLLALQYLDLERT-WIEE--VPEGMEMLE-NLSHLYLSSPP--LK--KFPTGILPRLRNLYK 643 (929)
Q Consensus 575 ~l~~~~~~~~--~~-~~~~l~~L~~L~l~~~-~i~~--lp~~i~~l~-~L~~L~l~~~~--~~--~~~~~~l~~l~~L~~ 643 (929)
++++|..++. ++ .+.++++|++|++++| .++. ++..+.+++ +|++|++++|. ++ .++. .+.++++|++
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~ 226 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-LVRRCPNLVH 226 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH-HHHHCTTCSE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH-HHhhCCCCCE
Confidence 8887755552 44 3677778888888887 7763 566677777 77888777773 32 2222 2355666666
Q ss_pred EEeecC
Q 042574 644 LKLSFG 649 (929)
Q Consensus 644 L~l~~~ 649 (929)
|++++|
T Consensus 227 L~l~~~ 232 (336)
T 2ast_B 227 LDLSDS 232 (336)
T ss_dssp EECTTC
T ss_pred EeCCCC
Confidence 666644
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.46 E-value=5.7e-13 Score=141.83 Aligned_cols=156 Identities=25% Similarity=0.380 Sum_probs=135.1
Q ss_pred cccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCc
Q 042574 484 LRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPS 563 (929)
Q Consensus 484 ~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~ 563 (929)
..+.+++. ....++++.|++++|.+..++. +..+++|+.|++++|. +..++. +..+++|++|++++|.++.++
T Consensus 56 ~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~n~i~~~~- 128 (291)
T 1h6t_A 56 SDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK-VKDLSS--LKDLKKLKSLSLEHNGISDIN- 128 (291)
T ss_dssp SCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-CCCGGG--GTTCTTCCEEECTTSCCCCCG-
T ss_pred CCcccChh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc-CCCChh--hccCCCCCEEECCCCcCCCCh-
Confidence 34455553 4556899999999999998876 5689999999999997 666665 589999999999999999874
Q ss_pred ccccccccceeecccccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccE
Q 042574 564 SVSNLTNLRSLLLRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYK 643 (929)
Q Consensus 564 ~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 643 (929)
.+..+++|++|++++|. +..++.+..+++|++|++++|.++.++. +..+++|++|++++|.++.++. +.++++|+.
T Consensus 129 ~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~ 204 (291)
T 1h6t_A 129 GLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDV 204 (291)
T ss_dssp GGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSE
T ss_pred hhcCCCCCCEEEccCCc-CCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh--hccCCCCCE
Confidence 68999999999999984 5566889999999999999999998876 9999999999999999998864 799999999
Q ss_pred EEeecCC
Q 042574 644 LKLSFGN 650 (929)
Q Consensus 644 L~l~~~~ 650 (929)
|++++|.
T Consensus 205 L~l~~n~ 211 (291)
T 1h6t_A 205 LELFSQE 211 (291)
T ss_dssp EEEEEEE
T ss_pred EECcCCc
Confidence 9999764
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=5.5e-13 Score=139.58 Aligned_cols=146 Identities=18% Similarity=0.238 Sum_probs=122.2
Q ss_pred cccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccce
Q 042574 494 EWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRS 573 (929)
Q Consensus 494 ~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~ 573 (929)
...++++.|++++|.+..++ . +..+++|++|++++|. +..++. +.++++|++|++++|.++.+|.... .+|++
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~-~-l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~ 110 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLA-G-MQFFTNLKELHLSHNQ-ISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSR 110 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCT-T-GGGCTTCCEEECCSSC-CCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCE
T ss_pred hhcCcCcEEECcCCCcccch-H-HhhCCCCCEEECCCCc-cCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccE
Confidence 34568999999999988887 2 4578999999999987 677776 5889999999999999988875433 89999
Q ss_pred eecccccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCC
Q 042574 574 LLLRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGN 650 (929)
Q Consensus 574 L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 650 (929)
|++++| .+..++.+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+ ..+..+++|+.|++++|.
T Consensus 111 L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 111 LFLDNN-ELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EECCSS-CCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEE
T ss_pred EEccCC-ccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCc
Confidence 999987 5566778899999999999999999886 688899999999999998887 347889999999998664
No 104
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.45 E-value=2.5e-13 Score=143.75 Aligned_cols=189 Identities=22% Similarity=0.216 Sum_probs=134.6
Q ss_pred ccccCCC-cccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCc
Q 042574 485 RLLKFPG-EQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPS 563 (929)
Q Consensus 485 ~l~~~p~-~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~ 563 (929)
.+..++. .....+++++|++++|.+..++...+..+++|++|++++|. +..++...|.++++|++|++++|.+..++.
T Consensus 39 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 117 (276)
T 2z62_A 39 PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLEN 117 (276)
T ss_dssp CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSCCCCSTT
T ss_pred cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCCCccccCc
Confidence 3334433 33345678889998888888877667788889999998887 555665556788889999999888887654
Q ss_pred -ccccccccceeecccccccc-cCc-cccccCCCCEEEccCCCCccccc-cccCCCCCC----EEEccCCCCccCCCCcc
Q 042574 564 -SVSNLTNLRSLLLRWCRRLK-RVP-SVAKLLALQYLDLERTWIEEVPE-GMEMLENLS----HLYLSSPPLKKFPTGIL 635 (929)
Q Consensus 564 -~i~~l~~L~~L~l~~~~~~~-~~~-~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~----~L~l~~~~~~~~~~~~l 635 (929)
.++.+++|++|++++|.... .+| .+.++++|++|++++|.++.++. .+..+++|+ +|++++|.++.+++..+
T Consensus 118 ~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~ 197 (276)
T 2z62_A 118 FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197 (276)
T ss_dssp CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS
T ss_pred hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc
Confidence 57888889999998875433 245 68888889999999888887754 466666666 78888888888877654
Q ss_pred CCCCCccEEEeecCCchhcccHHHHhcccccccEeEEEeccc
Q 042574 636 PRLRNLYKLKLSFGNEALRETVEEAARLSDGLDSFEGHFSEL 677 (929)
Q Consensus 636 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~~l 677 (929)
. ..+|++|++++|... ......+..+. +|+.|.+....+
T Consensus 198 ~-~~~L~~L~L~~n~l~-~~~~~~~~~l~-~L~~L~l~~N~~ 236 (276)
T 2z62_A 198 K-EIRLKELALDTNQLK-SVPDGIFDRLT-SLQKIWLHTNPW 236 (276)
T ss_dssp C-SCCEEEEECCSSCCS-CCCTTTTTTCC-SCCEEECCSSCB
T ss_pred C-CCcccEEECCCCcee-ecCHhHhcccc-cccEEEccCCcc
Confidence 4 347888888866422 22222345566 777777754443
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=5.1e-13 Score=136.76 Aligned_cols=146 Identities=27% Similarity=0.427 Sum_probs=127.3
Q ss_pred EEcCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCc
Q 042574 480 VKAGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIE 559 (929)
Q Consensus 480 ~~~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 559 (929)
...+.++..+|.. ..++++.|++++|.+..+++..+..+++|++|++++|. +..+|...|.++++|++|+|++|.++
T Consensus 25 ~c~~~~l~~ip~~--~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~ 101 (229)
T 3e6j_A 25 DCRSKRHASVPAG--IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLT 101 (229)
T ss_dssp ECTTSCCSSCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EccCCCcCccCCC--CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcCC
Confidence 3455667788874 45889999999999999877778899999999999998 78888887899999999999999999
Q ss_pred ccCcc-cccccccceeecccccccccCc-cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCcc
Q 042574 560 VLPSS-VSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKK 629 (929)
Q Consensus 560 ~lp~~-i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~ 629 (929)
.+|.. +..+++|++|++++|. +..+| .+..+++|++|++++|.+..+|.. +..+++|++|++.+|++..
T Consensus 102 ~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 102 VLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred ccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 88765 6899999999999985 55777 799999999999999999998865 8889999999999998653
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.45 E-value=7.8e-13 Score=133.34 Aligned_cols=146 Identities=26% Similarity=0.392 Sum_probs=110.8
Q ss_pred cEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcc-cccccccceeeccc
Q 042574 500 ERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSS-VSNLTNLRSLLLRW 578 (929)
Q Consensus 500 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~ 578 (929)
+.+...++.+..+|... .++|++|++++|. +..++...|..+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~~p~~~---~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI---PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCCCC---CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 45666677777776544 3578888888886 5667766667888888888888888877654 47788888888888
Q ss_pred ccccccCc--cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCC
Q 042574 579 CRRLKRVP--SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGN 650 (929)
Q Consensus 579 ~~~~~~~~--~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 650 (929)
|.. ..+| .+.++++|++|++++|.++.+|.. +.++++|++|++++|.++.++...+.++++|++|++++|.
T Consensus 86 n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 86 NQL-QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp SCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CcC-CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence 744 4444 367888888888888888877765 6778888888888888888887777888888888888663
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.45 E-value=2.6e-13 Score=158.55 Aligned_cols=168 Identities=23% Similarity=0.282 Sum_probs=112.4
Q ss_pred cccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceee
Q 042574 496 EENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLL 575 (929)
Q Consensus 496 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~ 575 (929)
+++++.|++++|.+..++. +..+++|+.|++++|. +..++. +..+++|++|+|++|.+..+| .+..+++|++|+
T Consensus 42 L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK-LTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSC-CCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCC-CCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 3466777777777766653 3467777777777776 555554 467777777777777777665 577777777777
Q ss_pred cccccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCCchhcc
Q 042574 576 LRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGNEALRE 655 (929)
Q Consensus 576 l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 655 (929)
|++|. +..++.+..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|.+..+++ +..+++|+.|+++.|....
T Consensus 116 Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-- 189 (605)
T 1m9s_A 116 LEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-- 189 (605)
T ss_dssp CTTSC-CCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB--
T ss_pred ecCCC-CCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCC--
Confidence 77763 44556677777777777777777766 456777777777777777776655 6777777777777654222
Q ss_pred cHHHHhcccccccEeEEEeccc
Q 042574 656 TVEEAARLSDGLDSFEGHFSEL 677 (929)
Q Consensus 656 ~~~~l~~l~~~L~~L~~~~~~l 677 (929)
+..+..+. +|+.|.+..+.+
T Consensus 190 -l~~l~~l~-~L~~L~L~~N~l 209 (605)
T 1m9s_A 190 -LRALAGLK-NLDVLELFSQEC 209 (605)
T ss_dssp -CGGGTTCT-TCSEEECCSEEE
T ss_pred -ChHHccCC-CCCEEEccCCcC
Confidence 23455556 666666654433
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=3e-13 Score=136.46 Aligned_cols=158 Identities=24% Similarity=0.351 Sum_probs=131.5
Q ss_pred EcCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcc
Q 042574 481 KAGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEV 560 (929)
Q Consensus 481 ~~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~ 560 (929)
..+..+.++|.. ..+++++|++++|.+..++...+..+++|++|++++|. +..++...|..+++|++|++++|.++.
T Consensus 14 c~~~~l~~~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 90 (208)
T 2o6s_A 14 CYSQGRTSVPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQS 90 (208)
T ss_dssp CCSSCCSSCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ecCCCccCCCCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCc
Confidence 344556677754 35689999999999999988888899999999999997 678888777899999999999999998
Q ss_pred cCcc-cccccccceeecccccccccCc--cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCccCCCCccC
Q 042574 561 LPSS-VSNLTNLRSLLLRWCRRLKRVP--SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILP 636 (929)
Q Consensus 561 lp~~-i~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~ 636 (929)
+|.. +..+++|++|++++|.. ..++ .+.++++|++|++++|.++.+|.. +..+++|++|++++|.+. +
T Consensus 91 ~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~ 162 (208)
T 2o6s_A 91 LPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------C 162 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------C
T ss_pred cCHhHhcCccCCCEEEcCCCcC-cccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------c
Confidence 8765 68999999999999854 4555 478999999999999999988876 788999999999999653 3
Q ss_pred CCCCccEEEeecC
Q 042574 637 RLRNLYKLKLSFG 649 (929)
Q Consensus 637 ~l~~L~~L~l~~~ 649 (929)
.+++|+.|+++.+
T Consensus 163 ~~~~l~~L~~~~n 175 (208)
T 2o6s_A 163 TCPGIRYLSEWIN 175 (208)
T ss_dssp CTTTTHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 4566776665533
No 109
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.44 E-value=4.8e-13 Score=135.96 Aligned_cols=147 Identities=24% Similarity=0.300 Sum_probs=125.8
Q ss_pred EEEcCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCC
Q 042574 479 MVKAGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNI 558 (929)
Q Consensus 479 ~~~~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 558 (929)
+...+.++.++|.. .+++++.|++++|.+..++...+..+++|+.|++++|. +..++...|.++++|++|+|++|.+
T Consensus 16 v~c~~~~l~~iP~~--l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 16 VDCRGKGLTEIPTN--LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EECTTSCCSSCCSS--CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEcCCCCcCcCCCc--cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCcC
Confidence 34456677888874 34789999999999999988888899999999999997 6666555568999999999999999
Q ss_pred cccCcc-cccccccceeecccccccccCc-cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCc
Q 042574 559 EVLPSS-VSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLK 628 (929)
Q Consensus 559 ~~lp~~-i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~ 628 (929)
+.+|.. +..+++|++|++++|......| .+..+++|++|++++|.++.+|.. +..+++|++|++++|++.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 999876 5889999999999986554445 699999999999999999998875 888999999999998764
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.41 E-value=9.5e-13 Score=133.74 Aligned_cols=146 Identities=22% Similarity=0.279 Sum_probs=123.6
Q ss_pred EEcCcccccCCCcccccccccEEEcccCCCCcCC-CCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCC
Q 042574 480 VKAGLRLLKFPGEQEWEENLERVSLMDNHIEEIP-SNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNI 558 (929)
Q Consensus 480 ~~~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 558 (929)
...+..+.++|.. ....++.|++++|.+..++ ...+..+++|++|++++|. +..++...|.++++|++|+|++|.+
T Consensus 17 ~~s~n~l~~iP~~--~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 17 DCSNQKLNKIPEH--IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp ECCSSCCSSCCSC--CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeCCCCcccCccC--CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCcc
Confidence 3445567778864 3567899999999999874 4567789999999999997 7777776679999999999999999
Q ss_pred cccCcc-cccccccceeecccccccccCc-cccccCCCCEEEccCCCCccc-cccccCCCCCCEEEccCCCCc
Q 042574 559 EVLPSS-VSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIEEV-PEGMEMLENLSHLYLSSPPLK 628 (929)
Q Consensus 559 ~~lp~~-i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~ 628 (929)
+.+|.. +..+++|++|++++|......| .+..+++|++|++++|.++.+ |..+..+++|++|++++|++.
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 988654 8899999999999986655555 699999999999999999988 566999999999999999765
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.39 E-value=4.4e-12 Score=146.44 Aligned_cols=132 Identities=21% Similarity=0.383 Sum_probs=111.8
Q ss_pred ccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceeec
Q 042574 497 ENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLL 576 (929)
Q Consensus 497 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l 576 (929)
.+++.|++++|.+..+|..++ ++|++|++++|. +..+| ..+++|++|++++|.++.+|. ++. +|++|++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N~-l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP---PQITVLEITQNA-LISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC---TTCSEEECCSSC-CSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCCCCccCHhHc---CCCCEEECcCCC-Ccccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEEC
Confidence 368899999999998887653 789999999997 66788 357899999999999999988 665 8999999
Q ss_pred ccccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecC
Q 042574 577 RWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFG 649 (929)
Q Consensus 577 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 649 (929)
++|. ++.+|. .+++|++|++++|.++.+|. .+++|++|++++|.++.+|. +. ++|+.|++++|
T Consensus 128 s~N~-l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 128 DNNQ-LTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTN 190 (571)
T ss_dssp CSSC-CSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSS
T ss_pred CCCc-CCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCC
Confidence 9984 455776 78999999999999999887 57899999999999988877 45 88888888866
No 112
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.38 E-value=1.2e-12 Score=140.83 Aligned_cols=153 Identities=25% Similarity=0.209 Sum_probs=109.3
Q ss_pred ccccEEEcccCCCCcCCCCCC--CCCCcccEEEcccCCcCccCc---HHHHccCCCCcEEEecCCCCcccC-cccccccc
Q 042574 497 ENLERVSLMDNHIEEIPSNMS--PHCKILSTLLLQRNGYLQRIP---ECFFMHMRGLKVLNLSHTNIEVLP-SSVSNLTN 570 (929)
Q Consensus 497 ~~l~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~ 570 (929)
.++++|++++|.+....+..+ ..+++|++|++++|......+ ...+..+++|++|++++|.+..+| ..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 458888888888775443333 678889999999887443322 222357888999999999888664 56788889
Q ss_pred cceeeccccccccc--Cc---cccccCCCCEEEccCCCCcccccc----ccCCCCCCEEEccCCCCccCCCCccCCC---
Q 042574 571 LRSLLLRWCRRLKR--VP---SVAKLLALQYLDLERTWIEEVPEG----MEMLENLSHLYLSSPPLKKFPTGILPRL--- 638 (929)
Q Consensus 571 L~~L~l~~~~~~~~--~~---~~~~l~~L~~L~l~~~~i~~lp~~----i~~l~~L~~L~l~~~~~~~~~~~~l~~l--- 638 (929)
|++|++++|..... ++ .++.+++|++|++++|.++.+|.. +.++++|++|++++|.+....+..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 99999988864432 22 246788899999999888766553 4677889999998888877633334554
Q ss_pred CCccEEEeecC
Q 042574 639 RNLYKLKLSFG 649 (929)
Q Consensus 639 ~~L~~L~l~~~ 649 (929)
++|++|++++|
T Consensus 251 ~~L~~L~Ls~N 261 (310)
T 4glp_A 251 SALNSLNLSFA 261 (310)
T ss_dssp TTCCCEECCSS
T ss_pred CcCCEEECCCC
Confidence 57888877755
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.38 E-value=1.7e-12 Score=142.95 Aligned_cols=170 Identities=23% Similarity=0.315 Sum_probs=136.7
Q ss_pred ccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHc-cCCCCcEEEecCCCCcccC-cccccccccceeec
Q 042574 499 LERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFM-HMRGLKVLNLSHTNIEVLP-SSVSNLTNLRSLLL 576 (929)
Q Consensus 499 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l 576 (929)
.+.++.+++.+..+|..+. +.++.|++++|. +..++...|. ++++|++|+|++|.++.+| ..+..+++|++|+|
T Consensus 20 ~~~l~c~~~~l~~iP~~~~---~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP---SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC---TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCccCccCC---CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 4678999999999987654 568999999997 7777777666 8999999999999999886 46899999999999
Q ss_pred ccccccccCc--cccccCCCCEEEccCCCCcccc-ccccCCCCCCEEEccCCCCccCCCCcc---CCCCCccEEEeecCC
Q 042574 577 RWCRRLKRVP--SVAKLLALQYLDLERTWIEEVP-EGMEMLENLSHLYLSSPPLKKFPTGIL---PRLRNLYKLKLSFGN 650 (929)
Q Consensus 577 ~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~ 650 (929)
++|.. ..++ .+..+++|++|+|++|.|..++ ..+.++++|++|++++|.++.+|...+ .++++|+.|++++|.
T Consensus 96 s~N~l-~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 96 SSNHL-HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CSSCC-CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CCCcC-CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 99864 5444 5899999999999999999874 459999999999999999999988776 679999999999775
Q ss_pred chhcccHHHHhccccc--ccEeEEEec
Q 042574 651 EALRETVEEAARLSDG--LDSFEGHFS 675 (929)
Q Consensus 651 ~~~~~~~~~l~~l~~~--L~~L~~~~~ 675 (929)
. .......+..+. . ++.|.+...
T Consensus 175 l-~~l~~~~~~~l~-~~~l~~l~l~~N 199 (361)
T 2xot_A 175 L-KKLPLTDLQKLP-AWVKNGLYLHNN 199 (361)
T ss_dssp C-CCCCHHHHHHSC-HHHHTTEECCSS
T ss_pred C-CccCHHHhhhcc-HhhcceEEecCC
Confidence 3 233445555555 3 355555433
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.37 E-value=2.4e-12 Score=150.44 Aligned_cols=155 Identities=25% Similarity=0.388 Sum_probs=133.8
Q ss_pred ccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcc
Q 042574 485 RLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSS 564 (929)
Q Consensus 485 ~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~ 564 (929)
.+..++. ...+++++.|++++|.+..+++ +..+++|+.|++++|. +..++. +..+++|++|+|++|.+..+| .
T Consensus 54 ~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~l~-~ 126 (605)
T 1m9s_A 54 DIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK-IKDLSS--LKDLKKLKSLSLEHNGISDIN-G 126 (605)
T ss_dssp CCCCCTT-GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC-CCCCTT--STTCTTCCEEECTTSCCCCCG-G
T ss_pred CCCCChH-HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC-CCCChh--hccCCCCCEEEecCCCCCCCc-c
Confidence 3445553 4567899999999999998876 5689999999999997 666663 578999999999999999875 5
Q ss_pred cccccccceeecccccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEE
Q 042574 565 VSNLTNLRSLLLRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKL 644 (929)
Q Consensus 565 i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 644 (929)
+..+++|+.|+|++|. +..++.+..+++|+.|+|++|.+..+++ +..+++|++|+|++|.+..++. +..+++|+.|
T Consensus 127 l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~--l~~l~~L~~L 202 (605)
T 1m9s_A 127 LVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVL 202 (605)
T ss_dssp GGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEE
T ss_pred ccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCChH--HccCCCCCEE
Confidence 8999999999999984 5566889999999999999999998876 9999999999999999998753 7999999999
Q ss_pred EeecCC
Q 042574 645 KLSFGN 650 (929)
Q Consensus 645 ~l~~~~ 650 (929)
+++.|.
T Consensus 203 ~L~~N~ 208 (605)
T 1m9s_A 203 ELFSQE 208 (605)
T ss_dssp ECCSEE
T ss_pred EccCCc
Confidence 999764
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.37 E-value=5.8e-13 Score=139.39 Aligned_cols=168 Identities=21% Similarity=0.220 Sum_probs=137.7
Q ss_pred cccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceee
Q 042574 496 EENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLL 575 (929)
Q Consensus 496 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~ 575 (929)
..++..+.+..+.+..++. +..+++|++|++++|. +..++ . +..+++|++|++++|.++.+|. +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~~--~~~l~~L~~L~l~~n~-i~~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSN-IQSLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEEC--HHHHTTCSEEECTTSC-CCCCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCcccccc--hhhcCcCcEEECcCCC-cccch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 4456777888888887762 4578999999999997 77777 3 5789999999999999999887 99999999999
Q ss_pred cccccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCCchhcc
Q 042574 576 LRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGNEALRE 655 (929)
Q Consensus 576 l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 655 (929)
+++| .+..+|.+.. .+|++|++++|.++.+| .+.++++|++|++++|.++.++ .+..+++|+.|++++|.....
T Consensus 92 L~~N-~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 92 VNRN-RLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp CCSS-CCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCCC-ccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch-
Confidence 9998 4566775555 99999999999999986 5899999999999999999886 378999999999997753332
Q ss_pred cHHHHhcccccccEeEEEecccc
Q 042574 656 TVEEAARLSDGLDSFEGHFSELK 678 (929)
Q Consensus 656 ~~~~l~~l~~~L~~L~~~~~~l~ 678 (929)
..+..+. +|+.|.+....+.
T Consensus 166 --~~l~~l~-~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 --GGLTRLK-KVNWIDLTGQKCV 185 (263)
T ss_dssp --TTSTTCC-CCCEEEEEEEEEE
T ss_pred --HHhccCC-CCCEEeCCCCccc
Confidence 4455666 7888877655443
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.35 E-value=3.1e-12 Score=127.64 Aligned_cols=143 Identities=15% Similarity=0.254 Sum_probs=118.0
Q ss_pred cCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcc-
Q 042574 482 AGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEV- 560 (929)
Q Consensus 482 ~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~- 560 (929)
.+..+.++| .....+++++|++++|.+..++ .+..+++|++|++++|......+.. +..+++|++|++++|.++.
T Consensus 52 ~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~i~~~ 127 (197)
T 4ezg_A 52 ANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAHDDS 127 (197)
T ss_dssp ESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEECCSSBCBGG
T ss_pred cCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEEecCCccCcH
Confidence 344556667 4566789999999999877664 3457999999999999844334544 4789999999999999984
Q ss_pred cCcccccccccceeecccccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCcc
Q 042574 561 LPSSVSNLTNLRSLLLRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKK 629 (929)
Q Consensus 561 lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~ 629 (929)
.|..++.+++|++|++++|..+..+|.+..+++|++|++++|.++.++ .+..+++|++|++++|++..
T Consensus 128 ~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 128 ILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred hHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 677899999999999999976888889999999999999999999987 78999999999999998643
No 117
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.34 E-value=4.9e-13 Score=149.02 Aligned_cols=156 Identities=17% Similarity=0.141 Sum_probs=99.0
Q ss_pred ccccccEEEcccCCCCcCCC----CCCCCCCcccEEEcccCC---cCccCcHHH------HccCCCCcEEEecCCCCcc-
Q 042574 495 WEENLERVSLMDNHIEEIPS----NMSPHCKILSTLLLQRNG---YLQRIPECF------FMHMRGLKVLNLSHTNIEV- 560 (929)
Q Consensus 495 ~~~~l~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~---~~~~~~~~~------~~~l~~L~~L~l~~~~i~~- 560 (929)
..+++++|++++|.+..... ..+..+++|++|++++|. ....+|..+ +..+++|++|+|++|.+..
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 34567888888876653211 123467788888887763 112334433 3567888888888887764
Q ss_pred ----cCcccccccccceeeccccccccc----Cc-ccccc---------CCCCEEEccCCCCc--ccc---ccccCCCCC
Q 042574 561 ----LPSSVSNLTNLRSLLLRWCRRLKR----VP-SVAKL---------LALQYLDLERTWIE--EVP---EGMEMLENL 617 (929)
Q Consensus 561 ----lp~~i~~l~~L~~L~l~~~~~~~~----~~-~~~~l---------~~L~~L~l~~~~i~--~lp---~~i~~l~~L 617 (929)
+|..+..+++|++|++++|..... ++ .+..+ ++|++|++++|.+. .+| ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 666777788888888887754221 11 23334 78888888888775 444 346677788
Q ss_pred CEEEccCCCCcc-----CCCCccCCCCCccEEEeecCC
Q 042574 618 SHLYLSSPPLKK-----FPTGILPRLRNLYKLKLSFGN 650 (929)
Q Consensus 618 ~~L~l~~~~~~~-----~~~~~l~~l~~L~~L~l~~~~ 650 (929)
++|++++|.+.. +.+..+.++++|++|++++|.
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~ 227 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 227 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC
Confidence 888888877652 222135677778888777654
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.33 E-value=1.9e-12 Score=125.50 Aligned_cols=131 Identities=24% Similarity=0.220 Sum_probs=68.2
Q ss_pred ccccEEEcccCCCC--cCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcc-cCcccccccccce
Q 042574 497 ENLERVSLMDNHIE--EIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEV-LPSSVSNLTNLRS 573 (929)
Q Consensus 497 ~~l~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~ 573 (929)
+++++|++++|.+. .+|.. +..+++|++|++++|. +..+ ..+..+++|++|++++|.++. +|..+..+++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVG-LISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSC-CCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCC-CCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 45666666666555 44433 3355556666665554 3333 223455556666666655554 4444444555555
Q ss_pred eecccccccccCc---cccccCCCCEEEccCCCCccccc----cccCCCCCCEEEccCCCCccCCC
Q 042574 574 LLLRWCRRLKRVP---SVAKLLALQYLDLERTWIEEVPE----GMEMLENLSHLYLSSPPLKKFPT 632 (929)
Q Consensus 574 L~l~~~~~~~~~~---~~~~l~~L~~L~l~~~~i~~lp~----~i~~l~~L~~L~l~~~~~~~~~~ 632 (929)
|++++|. ++.+| .+..+++|++|++++|.+..+|. .+..+++|++|++++|.+..+|.
T Consensus 100 L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 100 LNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp EECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred EeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 5555553 23322 35555555555555555555544 35555555555555555544443
No 119
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.32 E-value=1.6e-12 Score=140.04 Aligned_cols=175 Identities=18% Similarity=0.103 Sum_probs=127.7
Q ss_pred cccccccEEEcccCCCCcCCC----CCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcc---cCc--c
Q 042574 494 EWEENLERVSLMDNHIEEIPS----NMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEV---LPS--S 564 (929)
Q Consensus 494 ~~~~~l~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~---lp~--~ 564 (929)
....++++|++++|.+..... ..+..+++|++|++++|. +..++...+.++++|++|++++|.+.. ++. .
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 192 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALC 192 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHh
Confidence 446788999999998775322 112368899999999997 566665556889999999999998653 432 3
Q ss_pred cccccccceeecccccccccCcc-----ccccCCCCEEEccCCCCccc-cccccCC---CCCCEEEccCCCCccCCCCcc
Q 042574 565 VSNLTNLRSLLLRWCRRLKRVPS-----VAKLLALQYLDLERTWIEEV-PEGMEML---ENLSHLYLSSPPLKKFPTGIL 635 (929)
Q Consensus 565 i~~l~~L~~L~l~~~~~~~~~~~-----~~~l~~L~~L~l~~~~i~~l-p~~i~~l---~~L~~L~l~~~~~~~~~~~~l 635 (929)
++.+++|++|++++|. ++.++. ++.+++|++|++++|.+..+ |..+..+ ++|++|++++|.++.+|...
T Consensus 193 ~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~- 270 (310)
T 4glp_A 193 PHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL- 270 (310)
T ss_dssp TTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-
T ss_pred hhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-
Confidence 4688899999999884 444442 46789999999999988876 7777666 69999999999998887764
Q ss_pred CCCCCccEEEeecCCchhcccHHHHhcccccccEeEEEeccc
Q 042574 636 PRLRNLYKLKLSFGNEALRETVEEAARLSDGLDSFEGHFSEL 677 (929)
Q Consensus 636 ~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~~l 677 (929)
. ++|++|++++|...... .+..+. +|+.|.+....+
T Consensus 271 ~--~~L~~L~Ls~N~l~~~~---~~~~l~-~L~~L~L~~N~l 306 (310)
T 4glp_A 271 P--AKLRVLDLSSNRLNRAP---QPDELP-EVDNLTLDGNPF 306 (310)
T ss_dssp C--SCCSCEECCSCCCCSCC---CTTSCC-CCSCEECSSTTT
T ss_pred c--CCCCEEECCCCcCCCCc---hhhhCC-CccEEECcCCCC
Confidence 2 78999999877533211 134556 777777655443
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=3.3e-12 Score=123.86 Aligned_cols=130 Identities=20% Similarity=0.192 Sum_probs=112.9
Q ss_pred CCCcccEEEcccCCcC-ccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceeecccccccccCc-cccccCCCCE
Q 042574 519 HCKILSTLLLQRNGYL-QRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQY 596 (929)
Q Consensus 519 ~~~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~ 596 (929)
..++|+.|++++|... ..+|.. +..+++|++|++++|.++.+ ..+..+++|++|++++|.....+| .+.++++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3478999999999833 277765 47899999999999999988 788999999999999987655577 4667999999
Q ss_pred EEccCCCCcccc--ccccCCCCCCEEEccCCCCccCCC---CccCCCCCccEEEeecCC
Q 042574 597 LDLERTWIEEVP--EGMEMLENLSHLYLSSPPLKKFPT---GILPRLRNLYKLKLSFGN 650 (929)
Q Consensus 597 L~l~~~~i~~lp--~~i~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~~~~ 650 (929)
|++++|.++.+| ..+..+++|++|++++|.++.++. ..+..+++|++|+++.|.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 999999999887 679999999999999999999887 568999999999998764
No 121
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.31 E-value=5.5e-13 Score=148.56 Aligned_cols=39 Identities=23% Similarity=0.230 Sum_probs=19.6
Q ss_pred cccCCCCEEEccCCCCcc-----ccccccCCCCCCEEEccCCCC
Q 042574 589 AKLLALQYLDLERTWIEE-----VPEGMEMLENLSHLYLSSPPL 627 (929)
Q Consensus 589 ~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~ 627 (929)
.++++|++|++++|.+.. +|..+.++++|++|++++|.+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 344555555555554443 344445555555555555544
No 122
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.31 E-value=5.4e-13 Score=145.69 Aligned_cols=177 Identities=24% Similarity=0.274 Sum_probs=138.2
Q ss_pred cccccccEEEcccCCCCc--CCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCC-CCc--ccCcccccc
Q 042574 494 EWEENLERVSLMDNHIEE--IPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHT-NIE--VLPSSVSNL 568 (929)
Q Consensus 494 ~~~~~l~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~i~--~lp~~i~~l 568 (929)
...+++++|++++|.+.. ++. .+..+++|++|++++|......+..+ ..+++|++|++++| .++ .+|..+..+
T Consensus 90 ~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~ 167 (336)
T 2ast_B 90 FSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSC 167 (336)
T ss_dssp CCCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred ccCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCcccCHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence 345789999999998763 332 34578999999999997444455544 78999999999999 677 477778899
Q ss_pred cccceeeccccccccc--Cc-cccccC-CCCEEEccCCC--C--ccccccccCCCCCCEEEccCCC-CccCCCCccCCCC
Q 042574 569 TNLRSLLLRWCRRLKR--VP-SVAKLL-ALQYLDLERTW--I--EEVPEGMEMLENLSHLYLSSPP-LKKFPTGILPRLR 639 (929)
Q Consensus 569 ~~L~~L~l~~~~~~~~--~~-~~~~l~-~L~~L~l~~~~--i--~~lp~~i~~l~~L~~L~l~~~~-~~~~~~~~l~~l~ 639 (929)
++|++|++++|..++. ++ .+..++ +|++|++++|. + ..+|..+.++++|++|++++|. ++......+.+++
T Consensus 168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~ 247 (336)
T 2ast_B 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 247 (336)
T ss_dssp TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence 9999999999955553 45 588899 99999999994 4 4677778899999999999998 6544344578999
Q ss_pred CccEEEeecCCchhcccHHHHhcccccccEeEEE
Q 042574 640 NLYKLKLSFGNEALRETVEEAARLSDGLDSFEGH 673 (929)
Q Consensus 640 ~L~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~ 673 (929)
+|++|++++|.......+..+..++ +|+.|.+.
T Consensus 248 ~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~ 280 (336)
T 2ast_B 248 YLQHLSLSRCYDIIPETLLELGEIP-TLKTLQVF 280 (336)
T ss_dssp TCCEEECTTCTTCCGGGGGGGGGCT-TCCEEECT
T ss_pred CCCEeeCCCCCCCCHHHHHHHhcCC-CCCEEecc
Confidence 9999999987644445455566677 78877764
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.30 E-value=1.2e-11 Score=122.53 Aligned_cols=122 Identities=21% Similarity=0.280 Sum_probs=81.3
Q ss_pred EEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceeecccccccccCc-cccccCCCCEEEccCCC
Q 042574 525 TLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLERTW 603 (929)
Q Consensus 525 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 603 (929)
+++++++. +..+|..+ .+.|++|++++|.++.+|..+..+++|++|++++|......+ .+..+++|++|++++|.
T Consensus 14 ~l~~~~~~-l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKG-LKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSC-CSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCC-CCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 44444443 44444432 245666666666666666666666666666666654333333 46777777777777777
Q ss_pred Ccccccc-ccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCC
Q 042574 604 IEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGN 650 (929)
Q Consensus 604 i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 650 (929)
++.+|.. +..+++|++|++++|.++.++.+.+..+++|+.|++++|.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 7777653 7778888888888888888887777888888888887664
No 124
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.30 E-value=1.5e-12 Score=143.45 Aligned_cols=107 Identities=20% Similarity=0.198 Sum_probs=49.4
Q ss_pred CcccEEEcccCCcCccCcH----HHHccCC-CCcEEEecCCCCccc-Ccccccc-----cccceeecccccccccCc-c-
Q 042574 521 KILSTLLLQRNGYLQRIPE----CFFMHMR-GLKVLNLSHTNIEVL-PSSVSNL-----TNLRSLLLRWCRRLKRVP-S- 587 (929)
Q Consensus 521 ~~L~~L~l~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~i~~l-p~~i~~l-----~~L~~L~l~~~~~~~~~~-~- 587 (929)
++|++|++++|. +...+. ..+.+++ +|++|+|++|.++.. +..+..+ ++|++|++++|......+ .
T Consensus 22 ~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 335555555554 333332 2334455 555555555555532 2333332 555555555554222222 1
Q ss_pred ---cccc-CCCCEEEccCCCCcccccc-----ccC-CCCCCEEEccCCCCc
Q 042574 588 ---VAKL-LALQYLDLERTWIEEVPEG-----MEM-LENLSHLYLSSPPLK 628 (929)
Q Consensus 588 ---~~~l-~~L~~L~l~~~~i~~lp~~-----i~~-l~~L~~L~l~~~~~~ 628 (929)
+..+ ++|++|++++|.++..+.. +.. .++|++|++++|.+.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG 151 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC
Confidence 2222 5555555555555543321 222 135555555555554
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.30 E-value=1.7e-12 Score=122.99 Aligned_cols=103 Identities=21% Similarity=0.235 Sum_probs=51.3
Q ss_pred ccCCCCcEEEecCCCCcccCcccccccccceeecccccccccCc-cccccCCCCEEEccCCCCcccc--ccccCCCCCCE
Q 042574 543 MHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIEEVP--EGMEMLENLSH 619 (929)
Q Consensus 543 ~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~ 619 (929)
..+++|++|++++|.++.+ ..++.+++|++|++++|.....+| .++.+++|++|++++|.++.+| ..+..+++|++
T Consensus 39 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~ 117 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKS 117 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCE
T ss_pred hhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCE
Confidence 3444555555555544444 344455555555555543332244 2334555555555555555443 44555555555
Q ss_pred EEccCCCCccCCC---CccCCCCCccEEEe
Q 042574 620 LYLSSPPLKKFPT---GILPRLRNLYKLKL 646 (929)
Q Consensus 620 L~l~~~~~~~~~~---~~l~~l~~L~~L~l 646 (929)
|++++|.++..++ ..+..+++|+.|++
T Consensus 118 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 118 LDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp EECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred EeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 5555555555544 33455555555544
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.28 E-value=2e-11 Score=140.97 Aligned_cols=170 Identities=19% Similarity=0.225 Sum_probs=114.3
Q ss_pred cCcccccCCCcccccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCccc
Q 042574 482 AGLRLLKFPGEQEWEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVL 561 (929)
Q Consensus 482 ~~~~l~~~p~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l 561 (929)
.+.++..+|... .++++.|++++|.+..+| ..+++|++|++++|. +..+|. + .+ +|++|++++|.++.+
T Consensus 67 s~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~-l~~ip~-l-~~--~L~~L~Ls~N~l~~l 135 (571)
T 3cvr_A 67 NRLNLSSLPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNR-LSTLPE-L-PA--SLKHLDVDNNQLTML 135 (571)
T ss_dssp CSSCCSCCCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSC-CSCCCC-C-CT--TCCEEECCSSCCSCC
T ss_pred CCCCCCccCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCC-CCCcch-h-hc--CCCEEECCCCcCCCC
Confidence 344555666543 367888888888888777 246788888888886 555776 3 33 788888888888877
Q ss_pred CcccccccccceeecccccccccCccccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCc
Q 042574 562 PSSVSNLTNLRSLLLRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNL 641 (929)
Q Consensus 562 p~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 641 (929)
|. .+++|++|++++|. ++.+|. .+++|++|++++|.++.+|. +. ++|++|++++|.++.+|. +.. +|
T Consensus 136 p~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~--~~~--~L 202 (571)
T 3cvr_A 136 PE---LPALLEYINADNNQ-LTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA--VPV--RN 202 (571)
T ss_dssp CC---CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC--CC-----
T ss_pred CC---cCccccEEeCCCCc-cCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh--HHH--hh
Confidence 76 57788888888774 444665 56788888888888887777 54 778888888888777766 333 55
Q ss_pred -------cEEEeecCCchhcccHHHHhcccccccEeEEEecccc
Q 042574 642 -------YKLKLSFGNEALRETVEEAARLSDGLDSFEGHFSELK 678 (929)
Q Consensus 642 -------~~L~l~~~~~~~~~~~~~l~~l~~~L~~L~~~~~~l~ 678 (929)
+.|++++|.... ....+..+. +|+.|.++.+.+.
T Consensus 203 ~~~~~~L~~L~Ls~N~l~~--lp~~l~~l~-~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 203 HHSEETEIFFRCRENRITH--IPENILSLD-PTCTIILEDNPLS 243 (571)
T ss_dssp -----CCEEEECCSSCCCC--CCGGGGGSC-TTEEEECCSSSCC
T ss_pred hcccccceEEecCCCccee--cCHHHhcCC-CCCEEEeeCCcCC
Confidence 778877664321 122344466 7777776655443
No 127
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.28 E-value=1.3e-10 Score=129.44 Aligned_cols=291 Identities=14% Similarity=0.153 Sum_probs=168.1
Q ss_pred ccccccchHHHHHHHHHHhc----CCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLM----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEI 214 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 214 (929)
..++|| +.+++.+.+++. .+..+.+.|+|++|+||||||+.+++...........++|+.+....+...+...+
T Consensus 20 ~~~~gr--~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 20 DELPHR--EDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp SCCTTC--HHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCCh--HHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 679999 778888888876 44567999999999999999999999874322102356788877766777888888
Q ss_pred HHHhcCCCCCC-ccHHHHHHHHHHHHHh-cCcEEEEEecCCCcC------CccccccCCCC-CCCCcEEEEEeCcccccc
Q 042574 215 ATALKQSLPEN-EDKVRRAGRLSEMLKA-KAKFVLILDDMWEAF------PLEEVGIPEPS-EENGCKLVITTRSLGVSR 285 (929)
Q Consensus 215 ~~~l~~~~~~~-~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~------~~~~l~~~~~~-~~~gs~ilvTtR~~~v~~ 285 (929)
+.+++...... .........+...+.. +++.+|||||++... .+..+...... ...+..+|+||+......
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 98 LESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp TTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 87776543221 1233334445555443 348999999996521 12222111110 134567788888654322
Q ss_pred c--------CCcceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcC---CccHHHHHHH-hhhc-----C
Q 042574 286 S--------MDCKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECD---GLPLAIVTVA-SCMR-----G 348 (929)
Q Consensus 286 ~--------~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~---g~Plai~~~~-~~L~-----~ 348 (929)
. +....+.+++++.++..+++...+..... ......+..+.+++.++ |.|..+..+. .... +
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~ 256 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK-PGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMK 256 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC-SSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 2 22223899999999999999886542211 11223556677777777 9987443332 2211 1
Q ss_pred --CCChhHHHHHHHHHhhhhccCCCCchhhhhhHHhhcccCCChhhhhHhhhhccCCC-C-CccCHHHHHHHHH----Hc
Q 042574 349 --VDEIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDDKVQQCFLYCALYPE-D-FAIPKEELIDYWI----AE 420 (929)
Q Consensus 349 --~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~a~fp~-~-~~i~~~~li~~w~----a~ 420 (929)
.-+.+.+..++.... ...+.-++..++ +..+..+..++.+.+ + ..+....+.+... ..
T Consensus 257 ~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~-~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~ 322 (386)
T 2qby_A 257 DTKVKEEYVYMAKEEIE-------------RDRVRDIILTLP-FHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL 322 (386)
T ss_dssp CSSCCHHHHHHHHHHHH-------------HHHHHHHHHTSC-HHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHh-------------hchHHHHHHcCC-HHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc
Confidence 123444554444322 124555667787 566665555553211 1 1233333322111 11
Q ss_pred CcccchhcHHHHHHhHHHHHHHHHHccccccc
Q 042574 421 GFIEEVKDVQAKYDRGHTILNRLVNCCLLERA 452 (929)
Q Consensus 421 g~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 452 (929)
| +... .......+++.|...++++..
T Consensus 323 g-~~~~-----~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 323 G-VEAV-----TQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp T-CCCC-----CHHHHHHHHHHHHHHTSEEEE
T ss_pred C-CCCC-----CHHHHHHHHHHHHhCCCEEEE
Confidence 2 1110 113566789999999999763
No 128
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.27 E-value=1.7e-10 Score=128.54 Aligned_cols=291 Identities=16% Similarity=0.162 Sum_probs=172.6
Q ss_pred ccccccchHHHHHHHHHHhc----CCCeeEEEEEcCCCChHHHHHHHHHHHHhhhc---CCCcEEEEEEECCCCCHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLM----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLDLIKLQ 211 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~ 211 (929)
..++|| +.+++++..++. ....+.+.|+|++|+||||+|+.+++...... +.-...+|+++....+...+.
T Consensus 19 ~~~~gr--~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHR--EAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTC--HHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCH--HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 678999 778888888773 34567899999999999999999998873221 112346788888888888999
Q ss_pred HHHHHHhcCCCCCCc-cHHHHHHHHHHHHH-hcCcEEEEEecCCCcC----Cccc---cccCCCCC--CCCcEEEEEeCc
Q 042574 212 TEIATALKQSLPENE-DKVRRAGRLSEMLK-AKAKFVLILDDMWEAF----PLEE---VGIPEPSE--ENGCKLVITTRS 280 (929)
Q Consensus 212 ~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~----~~~~---l~~~~~~~--~~gs~ilvTtR~ 280 (929)
..++.+++....... ........+...+. .+++.+|||||++... ..+. +....... ..+..+|+||+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 999999976543222 23333445555553 3458999999997532 1111 11111111 345677888876
Q ss_pred ccc--------cccCCcceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcC---CccH-HHHHHHhhhc-
Q 042574 281 LGV--------SRSMDCKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECD---GLPL-AIVTVASCMR- 347 (929)
Q Consensus 281 ~~v--------~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~---g~Pl-ai~~~~~~L~- 347 (929)
... ...+....+.+++++.++..+++...+..... ...-.++..+.+++.++ |.|- ++..+..+..
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~ 255 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFN-PGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEI 255 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBC-TTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhcc-CCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 532 22233334899999999999999987643110 01112335666777777 9993 3333322221
Q ss_pred ----C--CCChhHHHHHHHHHhhhhccCCCCchhhhhhHHhhcccCCChhhhhHhhhhc-cCCCCCccCHHHHHHHHH--
Q 042574 348 ----G--VDEIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDDKVQQCFLYCA-LYPEDFAIPKEELIDYWI-- 418 (929)
Q Consensus 348 ----~--~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~a-~fp~~~~i~~~~li~~w~-- 418 (929)
+ .-+.+.+..++.... ...+.-++..|+ ++.+..+...+ ++.....+....+.+...
T Consensus 256 a~~~~~~~i~~~~v~~a~~~~~-------------~~~~~~~~~~l~-~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~ 321 (387)
T 2v1u_A 256 AERRREERVRREHVYSARAEIE-------------RDRVSEVVRTLP-LHAKLVLLSIMMLEDGGRPASTGEIYERYKEL 321 (387)
T ss_dssp HHHTTCSCBCHHHHHHHHHHHH-------------HHHHHHHHHSSC-HHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH
T ss_pred HHHcCCCCcCHHHHHHHHHHHh-------------hchHHHHHHcCC-HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 1 123455655555432 123455677887 56665555455 333222444443333321
Q ss_pred --HcCcccchhcHHHHHHhHHHHHHHHHHccccccc
Q 042574 419 --AEGFIEEVKDVQAKYDRGHTILNRLVNCCLLERA 452 (929)
Q Consensus 419 --a~g~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~ 452 (929)
..| +.. .....+..++++|...|+++..
T Consensus 322 ~~~~~-~~~-----~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 322 TSTLG-LEH-----VTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHHTT-CCC-----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhcC-CCC-----CCHHHHHHHHHHHHhCCCeEEE
Confidence 122 111 0124667889999999999874
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.25 E-value=1.8e-11 Score=121.43 Aligned_cols=104 Identities=21% Similarity=0.212 Sum_probs=55.6
Q ss_pred CCcEEEecCCCCcccCcc--cccccccceeecccccccccCc-cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEc
Q 042574 547 GLKVLNLSHTNIEVLPSS--VSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYL 622 (929)
Q Consensus 547 ~L~~L~l~~~~i~~lp~~--i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l 622 (929)
+|++|++++|.++.+|.. ++.+++|++|++++|......| .+..+++|++|++++|.++.++.. +.++++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 444455555544444332 4445555555555543332323 355555555555555555555443 555666666666
Q ss_pred cCCCCccCCCCccCCCCCccEEEeecCC
Q 042574 623 SSPPLKKFPTGILPRLRNLYKLKLSFGN 650 (929)
Q Consensus 623 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 650 (929)
++|.++.+++..+..+++|++|++++|.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 6666665555555666666666666543
No 130
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.25 E-value=2e-10 Score=127.97 Aligned_cols=290 Identities=14% Similarity=0.128 Sum_probs=171.2
Q ss_pred ccccccchHHHHHHHHHHhcC----CCee--EEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMG----DKVT--KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQT 212 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~----~~~~--vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 212 (929)
..++|| +.+++++..++.. +... .+.|+|++|+||||||+.+++.... .. -..++|+.++...+...+..
T Consensus 17 ~~l~gr--~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~-~~-~~~~~~i~~~~~~~~~~~~~ 92 (389)
T 1fnn_A 17 KRLPHR--EQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKD-KT-TARFVYINGFIYRNFTAIIG 92 (389)
T ss_dssp SCCTTC--HHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTT-SC-CCEEEEEETTTCCSHHHHHH
T ss_pred CCCCCh--HHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhh-hc-CeeEEEEeCccCCCHHHHHH
Confidence 679999 6677777776643 3334 8999999999999999999988631 11 23467888778788888999
Q ss_pred HHHHHhcCCCCCC-ccHHHHHHHHHHHHH-hcCcEEEEEecCCCc--CCccccccCCCC-CC---CCcEEEEEeCccccc
Q 042574 213 EIATALKQSLPEN-EDKVRRAGRLSEMLK-AKAKFVLILDDMWEA--FPLEEVGIPEPS-EE---NGCKLVITTRSLGVS 284 (929)
Q Consensus 213 ~i~~~l~~~~~~~-~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~--~~~~~l~~~~~~-~~---~gs~ilvTtR~~~v~ 284 (929)
.++..++...... .........+...+. .+++.+|||||++.. ..+..+...+.. .. .+..||+||+...+.
T Consensus 93 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 93 EIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp HHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred HHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 9999887643321 223333344444443 256899999999764 122222222211 01 466788888765432
Q ss_pred ccC--------CcceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhc---------CCccHHHHHHHhh-h
Q 042574 285 RSM--------DCKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEEC---------DGLPLAIVTVASC-M 346 (929)
Q Consensus 285 ~~~--------~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c---------~g~Plai~~~~~~-L 346 (929)
..+ ....+.+.+++.++..+++...+..... ...-.++..+.+++.+ +|.|-.+..+... .
T Consensus 173 ~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 173 NNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA-EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC-TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 222 2223899999999999999887643111 1122356778889998 7887544433322 1
Q ss_pred c-----CCC--ChhHHHHHHHHHhhhhccCCCCchhhhhhHHhhcccCCChhhhhHhhhhccCC---CCCccCHHHHHHH
Q 042574 347 R-----GVD--EIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDDKVQQCFLYCALYP---EDFAIPKEELIDY 416 (929)
Q Consensus 347 ~-----~~~--~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~a~fp---~~~~i~~~~li~~ 416 (929)
. +.. +.+....+..... ...+.-.+..|+ ++.+.++..++.+. .+..+....+...
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~-------------~~~~~~~l~~l~-~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~ 317 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL-------------FGISEEVLIGLP-LHEKLFLLAIVRSLKISHTPYITFGDAEES 317 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS-------------CCCCHHHHHHSC-HHHHHHHHHHHHHHHHHCSSCEEHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh-------------hhhHHHHHHcCC-HHHHHHHHHHHHHHhhccCCCccHHHHHHH
Confidence 1 111 1222222222111 122334456677 66676666666543 2214555555544
Q ss_pred HHH----cCcccchhcHHHHHHhHHHHHHHHHHcccccccc
Q 042574 417 WIA----EGFIEEVKDVQAKYDRGHTILNRLVNCCLLERAE 453 (929)
Q Consensus 417 w~a----~g~i~~~~~~~~~~~~~~~~l~~L~~~~ll~~~~ 453 (929)
+-. .|...- .......++++|..++++....
T Consensus 318 ~~~~~~~~~~~~~------~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 318 YKIVCEEYGERPR------VHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHHHHHHTTCCCC------CHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHcCCCCC------CHHHHHHHHHHHHhCCCeEEee
Confidence 432 121110 1245678899999999998753
No 131
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.24 E-value=8.5e-12 Score=137.47 Aligned_cols=262 Identities=12% Similarity=0.040 Sum_probs=153.9
Q ss_pred EEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccC-----ccccccc-ccceeecccccccccCc-ccccc-----CC
Q 042574 526 LLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLP-----SSVSNLT-NLRSLLLRWCRRLKRVP-SVAKL-----LA 593 (929)
Q Consensus 526 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-----~~i~~l~-~L~~L~l~~~~~~~~~~-~~~~l-----~~ 593 (929)
+.++.|. +....+.++...++|++|++++|.++..+ ..+..++ +|++|++++|......+ .+..+ ++
T Consensus 3 ~~ls~n~-~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHP-GSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCT-TCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccc-chHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4566676 44344445566667999999999998776 5677888 89999999985544434 45554 99
Q ss_pred CCEEEccCCCCcccccc-----ccCC-CCCCEEEccCCCCccCCCCc----cCC-CCCccEEEeecCCchhcccHHHH--
Q 042574 594 LQYLDLERTWIEEVPEG-----MEML-ENLSHLYLSSPPLKKFPTGI----LPR-LRNLYKLKLSFGNEALRETVEEA-- 660 (929)
Q Consensus 594 L~~L~l~~~~i~~lp~~-----i~~l-~~L~~L~l~~~~~~~~~~~~----l~~-l~~L~~L~l~~~~~~~~~~~~~l-- 660 (929)
|++|++++|.++..+.. +..+ ++|++|++++|.++..+... +.. .++|++|++++|.. .......+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL-GIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG-GGSCHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC-CHHHHHHHHH
Confidence 99999999998855433 4445 89999999999998776543 334 36999999997742 22333222
Q ss_pred --hcccccccEeEEEecccccchhcccccCCCCceeEEEEecccccccccccCcCCCceeEeecccccCCCCcccCc-cc
Q 042574 661 --ARLSDGLDSFEGHFSELKDFNIYVKSTDGRGSKHYCLLLSAYRMGAFMITGLELPKSVILNNYKICRGEEPIVLP-ED 737 (929)
Q Consensus 661 --~~l~~~L~~L~~~~~~l~~l~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~L~~~~~~~~~~~~~~~-~~ 737 (929)
..+..+|+.|.++...+....... . ...+... ++
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~------------------------l-------------------~~~l~~~~~~ 197 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAE------------------------L-------------------AKFLASIPAS 197 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHH------------------------H-------------------HHHHHTSCTT
T ss_pred HHhcCCccccEeeecCCCCchhhHHH------------------------H-------------------HHHHHhCCCC
Confidence 222225666655433322110000 0 0011222 47
Q ss_pred ccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccch---hchhhhcCCccEEEEecCcchhhhhc
Q 042574 738 VQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFS---LWLLPALQNLEVLKVYGCDSIKEIIA 814 (929)
Q Consensus 738 L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~---~~~l~~L~~L~~L~i~~c~~l~~i~~ 814 (929)
|+.|++.++.-...-.. .-...+...+++|+.|+|++| .+++.+. ...+..+++|++|++++|. +..+..
T Consensus 198 L~~L~Ls~N~i~~~~~~-----~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~ 270 (362)
T 3goz_A 198 VTSLDLSANLLGLKSYA-----ELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSK 270 (362)
T ss_dssp CCEEECTTSCGGGSCHH-----HHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCH
T ss_pred CCEEECCCCCCChhHHH-----HHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCH
Confidence 88888887752110000 001111222238999999886 4555432 1223567889999998874 211110
Q ss_pred cCcchhhhhhccccccccccCCCcceeeccccc
Q 042574 815 VEDEETEKELATNTIINTVTLPRLKKLRFYFLR 847 (929)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~ 847 (929)
.. ... .. .....+++|+.|++++++
T Consensus 271 ~~---~~~-l~----~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 271 EQ---CKA-LG----AAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HH---HHH-HH----TTSTTCCEEEEECTTSCB
T ss_pred HH---HHH-HH----HHhccCCceEEEecCCCc
Confidence 00 000 00 122256778888888764
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.23 E-value=3.4e-11 Score=119.38 Aligned_cols=126 Identities=25% Similarity=0.334 Sum_probs=107.6
Q ss_pred ccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcH-HHHccCCCCcEEEecCCCCccc-Ccccccccccceeec
Q 042574 499 LERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPE-CFFMHMRGLKVLNLSHTNIEVL-PSSVSNLTNLRSLLL 576 (929)
Q Consensus 499 l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l 576 (929)
.+.++++++.+..+|..++ +++++|++++|. +..++. .+|..+++|++|+|++|.++.+ |..+..+++|++|++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP---LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC---TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCEEEcCCCCcCcCccCCC---CCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 3689999999999987664 389999999997 666665 3468999999999999999976 778999999999999
Q ss_pred ccccccccCc-cccccCCCCEEEccCCCCccc-cccccCCCCCCEEEccCCCCc
Q 042574 577 RWCRRLKRVP-SVAKLLALQYLDLERTWIEEV-PEGMEMLENLSHLYLSSPPLK 628 (929)
Q Consensus 577 ~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~ 628 (929)
++|......+ .+..+++|++|++++|.++.+ |..+..+++|++|++++|.+.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9986554445 489999999999999999976 556899999999999999875
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.23 E-value=1.1e-11 Score=121.15 Aligned_cols=128 Identities=17% Similarity=0.180 Sum_probs=95.9
Q ss_pred CCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceeecccccccccCc-c-ccccCCCCE
Q 042574 519 HCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLRWCRRLKRVP-S-VAKLLALQY 596 (929)
Q Consensus 519 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~-~-~~~l~~L~~ 596 (929)
.+++|+.|++++|. +..++. +....++|++|++++|.++.+ ..+..+++|++|++++|.. ..+| . +..+++|++
T Consensus 17 ~~~~L~~L~l~~n~-l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYK-IPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSC-CCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCC-CchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcc-cccCcchhhcCCCCCE
Confidence 56677788887776 555543 323334888888888888877 5678888888888888754 4444 4 478888888
Q ss_pred EEccCCCCccccc--cccCCCCCCEEEccCCCCccCCCC---ccCCCCCccEEEeecCC
Q 042574 597 LDLERTWIEEVPE--GMEMLENLSHLYLSSPPLKKFPTG---ILPRLRNLYKLKLSFGN 650 (929)
Q Consensus 597 L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~---~l~~l~~L~~L~l~~~~ 650 (929)
|++++|.+..+|. .+..+++|++|++++|.+..+|.. .+..+++|+.|+++.+.
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 8888888888876 688888889999888888877654 46788888888887664
No 134
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.22 E-value=3.3e-10 Score=125.97 Aligned_cols=287 Identities=12% Similarity=0.079 Sum_probs=166.3
Q ss_pred ccccccchHHHHHHHHHHh----cCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhc----CC-CcEEEEEEECCCC-CHH
Q 042574 139 ATLAGKKTKKVVERIWEDL----MGDKVTKIGVWGMGGIGKTTIMKEINNRLQKET----NK-FNVVIWVTVSQPL-DLI 208 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~~-f~~~~wv~~s~~~-~~~ 208 (929)
..++|| +.+++++..++ ..+..+.|.|+|++|+||||+|+.+++...... +. ...++|++++... +..
T Consensus 20 ~~l~gr--~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFR--EDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTC--HHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCCh--HHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 679999 56666666554 345567999999999999999999999863321 11 3457788877766 888
Q ss_pred HHHHHHHHHhcC-CCCC-CccHHHHHHHHHHHHHhcCcEEEEEecCCCcC--C-ccc-cccCCCCCCCCcEEEEEeCccc
Q 042574 209 KLQTEIATALKQ-SLPE-NEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF--P-LEE-VGIPEPSEENGCKLVITTRSLG 282 (929)
Q Consensus 209 ~~~~~i~~~l~~-~~~~-~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~-~~~-l~~~~~~~~~gs~ilvTtR~~~ 282 (929)
.++..++.++.. .... ..........+...+. .++.+|||||++... . .+. +...+.. ..+..||+||+...
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~~~vlilDEi~~l~~~~~~~~~l~~l~~~-~~~~~iI~~t~~~~ 175 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR-NIRAIIYLDEVDTLVKRRGGDIVLYQLLRS-DANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS-SSCEEEEEETTHHHHHSTTSHHHHHHHHTS-SSCEEEEEECSSTT
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc-cCCCEEEEECHHHhccCCCCceeHHHHhcC-CcceEEEEEECCCc
Confidence 888888888732 2111 1122333445555553 344499999997531 1 222 1111111 15788999998753
Q ss_pred cc--------ccCCcceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcC---CccH-HHHHHHhh--hc-
Q 042574 283 VS--------RSMDCKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECD---GLPL-AIVTVASC--MR- 347 (929)
Q Consensus 283 v~--------~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~---g~Pl-ai~~~~~~--L~- 347 (929)
.. ..++. .+.+++++.++..+++...+...-. ...-.++..+.+++.++ |.|. |+..+-.. +.
T Consensus 176 ~~~~l~~~l~sr~~~-~i~l~~l~~~~~~~il~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 176 VRDYMEPRVLSSLGP-SVIFKPYDAEQLKFILSKYAEYGLI-KGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp TTTTSCHHHHHTCCC-EEEECCCCHHHHHHHHHHHHHHTSC-TTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT
T ss_pred hHhhhCHHHHhcCCC-eEEECCCCHHHHHHHHHHHHHhhcc-cCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc
Confidence 21 11122 4899999999999999987642110 01112345667777877 8876 44333322 22
Q ss_pred --CCCChhHHHHHHHHHhhhhccCCCCchhhhhhHHhhcccCCChhhhhHhhhhccCCCCCccCHHHHHHHHHHcCcccc
Q 042574 348 --GVDEIHEWRNALNELRGLVRSRNGVNADVLGRLEFSYHRLKDDKVQQCFLYCALYPEDFAIPKEELIDYWIAEGFIEE 425 (929)
Q Consensus 348 --~~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~a~fp~~~~i~~~~li~~w~a~g~i~~ 425 (929)
..-+.+.+..+++.... ..+..++..|+ ++.+..+..++....+-.+. .......-..| +..
T Consensus 254 ~~~~i~~~~v~~~~~~~~~-------------~~~~~~~~~l~-~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~ 317 (384)
T 2qby_B 254 GGGIIRKEHVDKAIVDYEQ-------------ERLIEAVKALP-FHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKP 317 (384)
T ss_dssp SSSCCCHHHHHHHHHHHHH-------------HHHHHHHHSSC-HHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCC
T ss_pred CCCccCHHHHHHHHHHHhc-------------chHHHHHHcCC-HHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCC
Confidence 12345666666654321 23556677887 66666655555411100110 11111111222 111
Q ss_pred hhcHHHHHHhHHHHHHHHHHccccccc
Q 042574 426 VKDVQAKYDRGHTILNRLVNCCLLERA 452 (929)
Q Consensus 426 ~~~~~~~~~~~~~~l~~L~~~~ll~~~ 452 (929)
........+++.|..+++++..
T Consensus 318 -----~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 318 -----LSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp -----CCHHHHHHHHHHHHHTTSEEEE
T ss_pred -----CCHHHHHHHHHHHHhCCCEEEE
Confidence 1124567889999999999874
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.22 E-value=6.3e-11 Score=117.37 Aligned_cols=124 Identities=29% Similarity=0.445 Sum_probs=107.2
Q ss_pred cEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccC-cccccccccceeeccc
Q 042574 500 ERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLP-SSVSNLTNLRSLLLRW 578 (929)
Q Consensus 500 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~ 578 (929)
+.++++++.+..+|..+. ++|++|++++|. +..+|.. |.++++|++|+|++|.++.++ ..+.++++|++|++++
T Consensus 13 ~~l~~~~~~l~~ip~~~~---~~l~~L~L~~n~-i~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP---RDVTELYLDGNQ-FTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCCEEECCSSC-CCSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcCCCCCC---CCCCEEECCCCc-CchhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 578899999999987654 689999999997 6788854 589999999999999999876 4589999999999999
Q ss_pred ccccccCc-cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCc
Q 042574 579 CRRLKRVP-SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLK 628 (929)
Q Consensus 579 ~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~ 628 (929)
|......| .+..+++|++|++++|.++.+|.. +..+++|++|++++|++.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 86544444 599999999999999999999886 888999999999998764
No 136
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.21 E-value=2.1e-11 Score=115.45 Aligned_cols=123 Identities=21% Similarity=0.241 Sum_probs=105.3
Q ss_pred cccccEEEcccCCCC--cCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcc-cCcccccccccc
Q 042574 496 EENLERVSLMDNHIE--EIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEV-LPSSVSNLTNLR 572 (929)
Q Consensus 496 ~~~l~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~ 572 (929)
.++++.|++++|.+. .+|. .+..+++|++|++++|. +..+ ..+..+++|++|++++|.++. +|..++.+++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVG-LTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSC-CCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCC-CCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 367999999999988 6775 44689999999999997 5555 335899999999999999997 787778899999
Q ss_pred eeecccccccccC---ccccccCCCCEEEccCCCCccccc----cccCCCCCCEEEcc
Q 042574 573 SLLLRWCRRLKRV---PSVAKLLALQYLDLERTWIEEVPE----GMEMLENLSHLYLS 623 (929)
Q Consensus 573 ~L~l~~~~~~~~~---~~~~~l~~L~~L~l~~~~i~~lp~----~i~~l~~L~~L~l~ 623 (929)
+|++++|. +..+ +.++.+++|++|++++|.++.+|. .+..+++|++|+++
T Consensus 92 ~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99999986 4443 368999999999999999998876 58899999999876
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.20 E-value=2.2e-11 Score=146.12 Aligned_cols=149 Identities=19% Similarity=0.215 Sum_probs=89.5
Q ss_pred ccccEEEcccCCCCcCCCCCCCCCCcccEEEc-----ccCCcCccCcHHHHccCCCCcEEEecCCCCcccCccccccccc
Q 042574 497 ENLERVSLMDNHIEEIPSNMSPHCKILSTLLL-----QRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNL 571 (929)
Q Consensus 497 ~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l-----~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L 571 (929)
..+++|++..|.+...+.... ....|+.+.+ ..|. +. ++...|..++.|++|+|++|.+..+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l-~~l~Ls~~~i~~~~~~~n~-~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALL-QHKKLSQYSIDEDDDIENR-MV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL 249 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcchhhHh-hcCccCcccccCccccccc-ee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence 346777777777665544332 2223333332 2222 22 44455678888999999998888888888888889
Q ss_pred ceeecccccccccCc-cccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCC
Q 042574 572 RSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGN 650 (929)
Q Consensus 572 ~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 650 (929)
++|+|++|.. ..+| .++++++|++|+|++|.|+.+|..+++|++|++|+|++|.++.+|.. |++|++|++|++++|.
T Consensus 250 ~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 250 TRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp SCCBCTTSCC-SCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTSC
T ss_pred CEEEeeCCcC-cccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCCc
Confidence 9999988744 4666 68888899999999988888888888888999999988888888776 7888889999888765
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.18 E-value=1.3e-10 Score=113.52 Aligned_cols=103 Identities=30% Similarity=0.469 Sum_probs=57.2
Q ss_pred CCcEEEecCCCCcccCcc-cccccccceeecccccccccCc--cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEc
Q 042574 547 GLKVLNLSHTNIEVLPSS-VSNLTNLRSLLLRWCRRLKRVP--SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYL 622 (929)
Q Consensus 547 ~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l 622 (929)
+|++|++++|.++.+|.. +..+++|++|++++|. +..+| .+..+++|++|++++|.++.+|.. +..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 444444444444444332 3444445555554442 22222 245556666666666666666554 456667777777
Q ss_pred cCCCCccCCCCccCCCCCccEEEeecCC
Q 042574 623 SSPPLKKFPTGILPRLRNLYKLKLSFGN 650 (929)
Q Consensus 623 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 650 (929)
++|.++.++...+.++++|++|+++.|.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 7776666666656667777777776554
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.15 E-value=6.6e-11 Score=137.44 Aligned_cols=120 Identities=22% Similarity=0.176 Sum_probs=88.5
Q ss_pred cccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceeecccccccccCccccccCCCCEEEccC
Q 042574 522 ILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLRWCRRLKRVPSVAKLLALQYLDLER 601 (929)
Q Consensus 522 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 601 (929)
.|++|++++|. +..+|. ++.+++|++|+|++|.++.+|..++.+++|++|+|++|. ++.+|.++++++|++|++++
T Consensus 442 ~L~~L~Ls~n~-l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKD-LTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSC-CSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCS
T ss_pred CceEEEecCCC-CCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCcccCCCCCCcEEECCC
Confidence 36677777775 555665 467788888888888888888888888888888888764 44567778888888888888
Q ss_pred CCCccc--cccccCCCCCCEEEccCCCCccCCCCc---cCCCCCccEEE
Q 042574 602 TWIEEV--PEGMEMLENLSHLYLSSPPLKKFPTGI---LPRLRNLYKLK 645 (929)
Q Consensus 602 ~~i~~l--p~~i~~l~~L~~L~l~~~~~~~~~~~~---l~~l~~L~~L~ 645 (929)
|.++.+ |..++++++|++|++++|.++..|+.. +..+++|+.|+
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 888877 677888888888888888877776532 23366777664
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.15 E-value=2e-10 Score=112.27 Aligned_cols=127 Identities=26% Similarity=0.445 Sum_probs=108.7
Q ss_pred cccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcc-cccccccceeec
Q 042574 498 NLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSS-VSNLTNLRSLLL 576 (929)
Q Consensus 498 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l 576 (929)
..+.++++++.+..+|.... ++|+.|++++|. +..++...|..+++|++|++++|.++.+|.. +..+++|++|++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~~---~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGIP---SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSSCCSSCCTTCC---TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEecCCCCccCCCCCC---CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 35678999999999886543 789999999997 6778877778999999999999999988765 689999999999
Q ss_pred ccccccccCc--cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCcc
Q 042574 577 RWCRRLKRVP--SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKK 629 (929)
Q Consensus 577 ~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~ 629 (929)
++|.. +.+| .+..+++|++|++++|.++.+|.. +..+++|++|++++|++..
T Consensus 84 ~~N~l-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 84 HENKL-QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCc-cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99854 4555 478999999999999999999887 5789999999999997653
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.14 E-value=5e-11 Score=116.37 Aligned_cols=128 Identities=18% Similarity=0.209 Sum_probs=108.5
Q ss_pred cccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCccc-cccccccee
Q 042574 496 EENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSV-SNLTNLRSL 574 (929)
Q Consensus 496 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L 574 (929)
+.+++.|++++|.+..++. +....++|++|++++|. +..++ .+..+++|++|++++|.++.+|..+ ..+++|++|
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE-IRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC-CCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC-CCccc--ccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4579999999999998854 44345599999999997 55553 3588999999999999999998766 899999999
Q ss_pred ecccccccccCc---cccccCCCCEEEccCCCCcccccc----ccCCCCCCEEEccCCCCc
Q 042574 575 LLRWCRRLKRVP---SVAKLLALQYLDLERTWIEEVPEG----MEMLENLSHLYLSSPPLK 628 (929)
Q Consensus 575 ~l~~~~~~~~~~---~~~~l~~L~~L~l~~~~i~~lp~~----i~~l~~L~~L~l~~~~~~ 628 (929)
++++|.. ..+| .+..+++|++|++++|.+..+|.. +..+++|++|++++|...
T Consensus 94 ~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999854 5555 588999999999999999999885 899999999999988754
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.14 E-value=2.8e-11 Score=145.22 Aligned_cols=110 Identities=25% Similarity=0.334 Sum_probs=58.0
Q ss_pred CCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceeecccccccccCc-cccccCCCC
Q 042574 517 SPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQ 595 (929)
Q Consensus 517 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~ 595 (929)
+..+++|++|++++|. +..+|..++ ++++|++|+|++|.++.+|..++.|++|++|+|++|.. ..+| .+++|++|+
T Consensus 220 ~~~l~~L~~L~Ls~n~-l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-IFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLK 296 (727)
T ss_dssp --CCCCCCEEECTTSC-CSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCC-SSCCSSGGGGTTCS
T ss_pred hccCCCCcEEECCCCC-CCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcC-CccChhhcCCCCCC
Confidence 3345555555555554 334554443 45555555555555555555555555555555555532 2444 455555555
Q ss_pred EEEccCCCCccccccccCCCCCCEEEccCCCCcc
Q 042574 596 YLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKK 629 (929)
Q Consensus 596 ~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~ 629 (929)
+|+|++|.|+.+|..+++|++|++|+|++|.++.
T Consensus 297 ~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 297 YFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp EEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred EEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 5555555555555555555555555555555543
No 143
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.11 E-value=1.7e-10 Score=101.94 Aligned_cols=74 Identities=12% Similarity=0.290 Sum_probs=64.7
Q ss_pred HhhhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 042574 10 FCKCVGPPICQYVRRHRKLSEIMRNLERALQELNSKKADIEATLKAECDLGNKQPSNEVNDWLENVERINNEAHSIEEEV 89 (929)
Q Consensus 10 ~~~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~a~~~~~~~~~~~v~~Wl~~v~~~~~~~~d~~d~~ 89 (929)
+++++.+.+.+++..+.+++++++.|+++|+.|++++.|+. .++....++.|+.|+++||+++||+||++|+|
T Consensus 6 ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~-------~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f 78 (115)
T 3qfl_A 6 LIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIG-------EVPREQLDSQDKLWADEVRELSYVIEDVVDKF 78 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------TSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH-------HhccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56699999999999999999999999999999999998854 22112357899999999999999999999998
Q ss_pred H
Q 042574 90 K 90 (929)
Q Consensus 90 ~ 90 (929)
.
T Consensus 79 ~ 79 (115)
T 3qfl_A 79 L 79 (115)
T ss_dssp H
T ss_pred H
Confidence 5
No 144
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.05 E-value=1.6e-09 Score=110.18 Aligned_cols=183 Identities=11% Similarity=0.157 Sum_probs=112.7
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHh
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATAL 218 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 218 (929)
..++|+ +..++.+.+++.....+.+.|+|++|+|||++|+.+++..... ..-...+.+..+...+...+...+....
T Consensus 17 ~~~~g~--~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 17 DEVVGQ--DEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGE-NWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp GGCCSC--HHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGG-GGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred HHHcCc--HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhcc-ccccceEEeccccccChHHHHHHHHHHh
Confidence 578998 6778888888887766569999999999999999999876321 1111234444444333333222221111
Q ss_pred cCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEEEeCcccc-cccC--CcceEe
Q 042574 219 KQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVITTRSLGV-SRSM--DCKEIG 293 (929)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~v-~~~~--~~~~~~ 293 (929)
.... ...+++.+||+||++... ..+.+...+.....+.++|+||+.... ...+ ....+.
T Consensus 94 ~~~~----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~ 157 (226)
T 2chg_A 94 RTAP----------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFR 157 (226)
T ss_dssp TSCC----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred cccC----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceee
Confidence 1000 012568999999997632 222232222222456788888876432 1111 111389
Q ss_pred cccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHH
Q 042574 294 VELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVA 343 (929)
Q Consensus 294 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 343 (929)
+.+++.++..+++.+.+..... .-.++..+.+++.++|.|..+..+.
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 158 FKPVPKEAMKKRLLEICEKEGV---KITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999887654322 1224567789999999998655443
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.05 E-value=1.7e-12 Score=129.67 Aligned_cols=104 Identities=31% Similarity=0.344 Sum_probs=47.1
Q ss_pred ccCCCCcEEEecCCCCcccCcccccccccceeecccccccccCc-cccccCCCCEEEccCCCCccccccccCCCCCCEEE
Q 042574 543 MHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLY 621 (929)
Q Consensus 543 ~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~ 621 (929)
..+++|++|++++|.++.+| .+..+++|++|++++|. +..+| .+..+++|++|++++|.++.+| .+..+++|++|+
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY 121 (198)
T ss_dssp HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred hcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence 44444444444444444444 44444444444444442 22333 2333444455555444444444 344444455555
Q ss_pred ccCCCCccCCC-CccCCCCCccEEEeecC
Q 042574 622 LSSPPLKKFPT-GILPRLRNLYKLKLSFG 649 (929)
Q Consensus 622 l~~~~~~~~~~-~~l~~l~~L~~L~l~~~ 649 (929)
+++|.++.++. ..+.++++|++|++++|
T Consensus 122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 122 MSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp ESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred CCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 54444443322 22344445555555433
No 146
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.04 E-value=7.4e-10 Score=114.54 Aligned_cols=193 Identities=13% Similarity=0.145 Sum_probs=111.7
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
..++|| +..++.+..++..+. .+.+.|+|++|+||||+|+.+++...... .+.. . ........ ..+...
T Consensus 23 ~~~~g~--~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~-~~~~---~---~~~~~~~~-~~~~~~ 92 (250)
T 1njg_A 23 ADVVGQ--EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GITA---T---PCGVCDNC-REIEQG 92 (250)
T ss_dssp GGCCSC--HHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTT-CSCS---S---CCSCSHHH-HHHHTT
T ss_pred HHHhCc--HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCC-CCCC---C---CCcccHHH-HHHhcc
Confidence 578998 677788888886544 45899999999999999999998863211 1100 0 00000000 000000
Q ss_pred h-----cCCCCCCccHHHHHHHHHHHHH----hcCcEEEEEecCCCc--CCccccccCCCCCCCCcEEEEEeCcccc-cc
Q 042574 218 L-----KQSLPENEDKVRRAGRLSEMLK----AKAKFVLILDDMWEA--FPLEEVGIPEPSEENGCKLVITTRSLGV-SR 285 (929)
Q Consensus 218 l-----~~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~~v-~~ 285 (929)
. .... ...........+...+. .+++.+||+||++.. ..++.+...+.....+..+|+||+.... ..
T Consensus 93 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~ 171 (250)
T 1njg_A 93 RFVDLIEIDA-ASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 171 (250)
T ss_dssp CCSSEEEEET-TCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred CCcceEEecC-cccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCH
Confidence 0 0000 00011111222222211 246899999999753 2333333333223457788888876432 11
Q ss_pred cC--CcceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHHhh
Q 042574 286 SM--DCKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVASC 345 (929)
Q Consensus 286 ~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~ 345 (929)
.+ ....+.+++++.++..+++...+..... ...++..+.|++.|+|.|..+..+...
T Consensus 172 ~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 172 TILSRCLQFHLKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11 1223899999999999999887754321 223566788999999999988776543
No 147
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.04 E-value=4.5e-10 Score=130.39 Aligned_cols=120 Identities=23% Similarity=0.282 Sum_probs=105.1
Q ss_pred cccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceeecc
Q 042574 498 NLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLR 577 (929)
Q Consensus 498 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~ 577 (929)
.++.|++++|.+..+|. +..+++|++|++++|. +..+|..+ +++++|++|+|++|.++.+| .++.+++|++|+++
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~-l~~lp~~~-~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNR-LRALPPAL-AALRCLEVLQASDNALENVD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSC-CCCCCGGG-GGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCccc-ccccchhh-hcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC
Confidence 48899999999999986 5689999999999997 66898865 89999999999999999998 89999999999999
Q ss_pred cccccccC-c-cccccCCCCEEEccCCCCccccccc----cCCCCCCEEEc
Q 042574 578 WCRRLKRV-P-SVAKLLALQYLDLERTWIEEVPEGM----EMLENLSHLYL 622 (929)
Q Consensus 578 ~~~~~~~~-~-~~~~l~~L~~L~l~~~~i~~lp~~i----~~l~~L~~L~l 622 (929)
+|...... | .++.+++|++|++++|.++.+|+.+ ..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 98654443 6 7999999999999999999887654 34789999864
No 148
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.99 E-value=1.4e-09 Score=105.30 Aligned_cols=101 Identities=25% Similarity=0.366 Sum_probs=76.9
Q ss_pred CcEEEecCCCCcccCcccccccccceeecccccccccCc-cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCC
Q 042574 548 LKVLNLSHTNIEVLPSSVSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSP 625 (929)
Q Consensus 548 L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~ 625 (929)
.+.++++++.++.+|..+. .+|++|++++|......| .+.++++|++|++++|.|+.+|.. +.++++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4677777777777776553 677788887764443334 477888888888888888888776 578888888888888
Q ss_pred CCccCCCCccCCCCCccEEEeecCC
Q 042574 626 PLKKFPTGILPRLRNLYKLKLSFGN 650 (929)
Q Consensus 626 ~~~~~~~~~l~~l~~L~~L~l~~~~ 650 (929)
.++.+++..+.++++|+.|++++|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 8888888778888888888888764
No 149
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.98 E-value=1.6e-09 Score=105.14 Aligned_cols=100 Identities=24% Similarity=0.388 Sum_probs=70.2
Q ss_pred cEEEecCCCCcccCcccccccccceeecccccccccCc-cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCC
Q 042574 549 KVLNLSHTNIEVLPSSVSNLTNLRSLLLRWCRRLKRVP-SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPP 626 (929)
Q Consensus 549 ~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~ 626 (929)
+.++++++.++.+|..+. .+|++|++++|......| .+.++++|++|+|++|.++.+|.. +.++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 566777777777766553 667777777764433334 467777777777777777777765 4677778888887777
Q ss_pred CccCCCCccCCCCCccEEEeecCC
Q 042574 627 LKKFPTGILPRLRNLYKLKLSFGN 650 (929)
Q Consensus 627 ~~~~~~~~l~~l~~L~~L~l~~~~ 650 (929)
++.+++..+.++++|++|++++|.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSC
T ss_pred cceeCHHHhccccCCCEEEeCCCC
Confidence 777777767777788888777664
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.93 E-value=2.4e-11 Score=121.29 Aligned_cols=143 Identities=24% Similarity=0.355 Sum_probs=114.2
Q ss_pred cccEEEcccC--CCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceee
Q 042574 498 NLERVSLMDN--HIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLL 575 (929)
Q Consensus 498 ~l~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~ 575 (929)
+++...+.+. .++.+|. .+..+++|++|++++|. +..+| . +.++++|++|++++|.++.+|..+..+++|++|+
T Consensus 24 ~l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n~-l~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ 99 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNN-IEKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELW 99 (198)
T ss_dssp TCSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEEE-ESCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEE
T ss_pred chheeEeccccCcHhhhhH-HHhcCCCCCEEECCCCC-Ccccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEEE
Confidence 3455555544 3444443 34578999999999997 66688 3 5789999999999999999998888899999999
Q ss_pred cccccccccCccccccCCCCEEEccCCCCccccc--cccCCCCCCEEEccCCCCccCCCC----------ccCCCCCccE
Q 042574 576 LRWCRRLKRVPSVAKLLALQYLDLERTWIEEVPE--GMEMLENLSHLYLSSPPLKKFPTG----------ILPRLRNLYK 643 (929)
Q Consensus 576 l~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~~~~~~~----------~l~~l~~L~~ 643 (929)
+++| .+..+|.+..+++|++|++++|.+..+|. .+..+++|++|++++|.+...++. .+.++++|+.
T Consensus 100 L~~N-~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 100 ISYN-QIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp EEEE-ECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred CcCC-cCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence 9998 55667789999999999999999998775 688999999999999987654332 2566777777
Q ss_pred EE
Q 042574 644 LK 645 (929)
Q Consensus 644 L~ 645 (929)
|+
T Consensus 179 Ld 180 (198)
T 1ds9_A 179 LD 180 (198)
T ss_dssp EC
T ss_pred EC
Confidence 75
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.89 E-value=4.1e-09 Score=102.26 Aligned_cols=103 Identities=27% Similarity=0.429 Sum_probs=63.2
Q ss_pred cEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCccc-CcccccccccceeecccccccccCc-c-ccccCCCCEEEcc
Q 042574 524 STLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVL-PSSVSNLTNLRSLLLRWCRRLKRVP-S-VAKLLALQYLDLE 600 (929)
Q Consensus 524 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~~~-~-~~~l~~L~~L~l~ 600 (929)
++++++++. +..+|..+ .++|++|+|++|.++.+ |..+..+++|++|+|++| .++.+| . +.++++|++|+++
T Consensus 15 ~~l~~~~n~-l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIR-LASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSC-CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCC-CCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECC
Confidence 345555544 44455433 25566666666666655 344566666666666665 333444 2 4667777777777
Q ss_pred CCCCcccccc-ccCCCCCCEEEccCCCCccCC
Q 042574 601 RTWIEEVPEG-MEMLENLSHLYLSSPPLKKFP 631 (929)
Q Consensus 601 ~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~ 631 (929)
+|.|+.+|.. +.++++|++|++++|.+...+
T Consensus 90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred CCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 7777777765 777788888888887766544
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.85 E-value=7e-09 Score=100.22 Aligned_cols=102 Identities=27% Similarity=0.402 Sum_probs=59.0
Q ss_pred cEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCccc-CcccccccccceeecccccccccCc--cccccCCCCEEEcc
Q 042574 524 STLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVL-PSSVSNLTNLRSLLLRWCRRLKRVP--SVAKLLALQYLDLE 600 (929)
Q Consensus 524 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~ 600 (929)
+++++++|. +..+|..+ .++|++|+|++|.++.+ |..+..+++|++|++++|. +..+| .+..+++|++|+++
T Consensus 12 ~~l~~s~n~-l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 12 TTVDCSGKS-LASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TEEECTTSC-CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCC-cCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECC
Confidence 344444443 34444332 24555566666655554 3445556666666666553 33333 24666777777777
Q ss_pred CCCCcccccc-ccCCCCCCEEEccCCCCccC
Q 042574 601 RTWIEEVPEG-MEMLENLSHLYLSSPPLKKF 630 (929)
Q Consensus 601 ~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~ 630 (929)
+|.++.+|.. +.++++|++|++++|++...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 7777777664 66777777777777766543
No 153
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.78 E-value=1.6e-08 Score=109.19 Aligned_cols=184 Identities=15% Similarity=0.229 Sum_probs=110.6
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHh
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATAL 218 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 218 (929)
..++|+ +..++.+..++..+..+.+.|+|++|+||||+|+.+++........ ..++++..++..+...+ ++++..+
T Consensus 21 ~~~~g~--~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~i-~~~~~~~ 96 (323)
T 1sxj_B 21 SDIVGN--KETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYA-DGVLELNASDDRGIDVV-RNQIKHF 96 (323)
T ss_dssp GGCCSC--THHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHH-HHEEEECTTSCCSHHHH-HTHHHHH
T ss_pred HHHHCC--HHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCccc-CCEEEecCccccChHHH-HHHHHHH
Confidence 678998 6778888888887776559999999999999999999886321111 12344444333232222 2222221
Q ss_pred cCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEEEeCccc-ccccC--CcceEe
Q 042574 219 KQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVITTRSLG-VSRSM--DCKEIG 293 (929)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~-v~~~~--~~~~~~ 293 (929)
...... +..+++.++|+||++... ..+.+...+.....++.+|+||+... +...+ .+..+.
T Consensus 97 ~~~~~~--------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~ 162 (323)
T 1sxj_B 97 AQKKLH--------------LPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILR 162 (323)
T ss_dssp HHBCCC--------------CCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred Hhcccc--------------CCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEe
Confidence 100000 003458899999997632 22222222222235678888886632 21111 122389
Q ss_pred cccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHH-HHHHH
Q 042574 294 VELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLA-IVTVA 343 (929)
Q Consensus 294 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla-i~~~~ 343 (929)
+.+++.++..+++...+..... .-.++.+..+++.++|.|.. +..+.
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIKLEDV---KYTNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 9999999999999887654321 12245678899999999954 44443
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.75 E-value=1.1e-08 Score=110.87 Aligned_cols=171 Identities=15% Similarity=0.186 Sum_probs=114.0
Q ss_pred ccccEEEcccCCCC--------------------cCCCCCCCC--------CCcccEEEcccCCcCccCcHHHHccCCCC
Q 042574 497 ENLERVSLMDNHIE--------------------EIPSNMSPH--------CKILSTLLLQRNGYLQRIPECFFMHMRGL 548 (929)
Q Consensus 497 ~~l~~L~l~~~~~~--------------------~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 548 (929)
++++.|++++|.+. .+|...|.+ |++|+.|.+.. . +..++...|.++++|
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNL 126 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTC
T ss_pred ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCccc
Confidence 35666666666555 566777778 89999999988 3 778888888899999
Q ss_pred cEEEecCCCCcccCc-ccccccccceeecccc-----------------cccc---------cCc---------------
Q 042574 549 KVLNLSHTNIEVLPS-SVSNLTNLRSLLLRWC-----------------RRLK---------RVP--------------- 586 (929)
Q Consensus 549 ~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~-----------------~~~~---------~~~--------------- 586 (929)
+.|++++|.+..++. .+..+.++.++.+... ..+. .++
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 206 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINF 206 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSE
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccce
Confidence 999999988776643 3555666666654431 1111 000
Q ss_pred -------------cc-cccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCccCCCCccCCCCCcc-EEEeecCC
Q 042574 587 -------------SV-AKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNLY-KLKLSFGN 650 (929)
Q Consensus 587 -------------~~-~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~-~L~l~~~~ 650 (929)
.+ ..+++|+.+++++|.++.+|.. +.++++|+.|++.+| ++.++.+.|.++++|+ .+.+..+
T Consensus 207 l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~~- 284 (329)
T 3sb4_A 207 LTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPAS- 284 (329)
T ss_dssp EEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECTT-
T ss_pred EEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEccc-
Confidence 00 1267888888888888888776 778888888888876 8888888888888888 8888642
Q ss_pred chhcccHHHHhcccccccEeEEE
Q 042574 651 EALRETVEEAARLSDGLDSFEGH 673 (929)
Q Consensus 651 ~~~~~~~~~l~~l~~~L~~L~~~ 673 (929)
.....-..+..+. +|+.+.+.
T Consensus 285 -l~~I~~~aF~~c~-~L~~l~l~ 305 (329)
T 3sb4_A 285 -VTAIEFGAFMGCD-NLRYVLAT 305 (329)
T ss_dssp -CCEECTTTTTTCT-TEEEEEEC
T ss_pred -ceEEchhhhhCCc-cCCEEEeC
Confidence 1111222233344 56655553
No 155
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.74 E-value=1.9e-08 Score=108.83 Aligned_cols=77 Identities=18% Similarity=0.212 Sum_probs=40.3
Q ss_pred ccccceeecccccccccCc--cccccCCCCEEEccCCCCcccccc-ccCCCCCC-EEEccCCCCccCCCCccCCCCCccE
Q 042574 568 LTNLRSLLLRWCRRLKRVP--SVAKLLALQYLDLERTWIEEVPEG-MEMLENLS-HLYLSSPPLKKFPTGILPRLRNLYK 643 (929)
Q Consensus 568 l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~ 643 (929)
+++|+.+++.+|. ++.+| .+.++.+|+.+++.++ ++.++.. +.++++|+ .+.+.+ .++.++.+.|.++++|+.
T Consensus 225 ~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 4455555555442 33444 3555555555555554 4445443 45555555 555554 455555555555555555
Q ss_pred EEee
Q 042574 644 LKLS 647 (929)
Q Consensus 644 L~l~ 647 (929)
+++.
T Consensus 302 l~l~ 305 (329)
T 3sb4_A 302 VLAT 305 (329)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 5554
No 156
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.73 E-value=1.3e-07 Score=99.54 Aligned_cols=170 Identities=11% Similarity=0.097 Sum_probs=102.7
Q ss_pred cccccchHHHHHHHHHHh----cCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcC-----CCcEEEEEEECCCCCHHHH
Q 042574 140 TLAGKKTKKVVERIWEDL----MGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETN-----KFNVVIWVTVSQPLDLIKL 210 (929)
Q Consensus 140 ~~vGr~~~~~~~~l~~~l----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----~f~~~~wv~~s~~~~~~~~ 210 (929)
.+.|| +++.+++...| .++..+.+.|+|++|+|||++|+.++++...... .| .++++.+....+...+
T Consensus 21 ~L~~R--e~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 21 LLKSQ--VEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHH--HHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHH
T ss_pred ccCCH--HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHH
Confidence 37788 56666666554 4567889999999999999999999999843221 12 3567777777788889
Q ss_pred HHHHHHHhcCCCCCCccHHHHHHHHHHHH--HhcCcEEEEEecCCCcCCccccccCC--CCC-CCCcEEEEEeCcccc--
Q 042574 211 QTEIATALKQSLPENEDKVRRAGRLSEML--KAKAKFVLILDDMWEAFPLEEVGIPE--PSE-ENGCKLVITTRSLGV-- 283 (929)
Q Consensus 211 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~~~~LlvlDdv~~~~~~~~l~~~~--~~~-~~gs~ilvTtR~~~v-- 283 (929)
+..|++++................+.... ..+++++++||+++.-..-+.+...+ +.. .....||.++...+.
T Consensus 98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~ 177 (318)
T 3te6_A 98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIR 177 (318)
T ss_dssp HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCH
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccch
Confidence 99999999643211111222333333332 23568999999997643222111111 001 111233333433221
Q ss_pred -------cccCCcceEecccCCHHHHHHHHHhhhcc
Q 042574 284 -------SRSMDCKEIGVELLSQEEALNLFLDKVRI 312 (929)
Q Consensus 284 -------~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 312 (929)
..+++...+.+.+++.++-.+++.+++..
T Consensus 178 ~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 178 EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 22344344899999999999999887643
No 157
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.68 E-value=3.1e-07 Score=99.15 Aligned_cols=171 Identities=15% Similarity=0.137 Sum_probs=99.7
Q ss_pred ccccccchHHHHHHHHHHhc-----CCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLM-----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTE 213 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~-----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 213 (929)
..++|+ +..+..+..++. ......|.|+|++|+|||++|+.+++... .. .+++..+......++..
T Consensus 12 ~~~ig~--~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~---~~---~~~~~~~~~~~~~~l~~- 82 (324)
T 1hqc_A 12 DEYIGQ--ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG---VN---LRVTSGPAIEKPGDLAA- 82 (324)
T ss_dssp TTCCSC--HHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT---CC---EEEECTTTCCSHHHHHH-
T ss_pred HHhhCH--HHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC---CC---EEEEeccccCChHHHHH-
Confidence 678998 455555555553 23346789999999999999999998762 12 23444333222222111
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHHHh--cCcEEEEEecCCCcC--CccccccC--------CCC----------CCCC
Q 042574 214 IATALKQSLPENEDKVRRAGRLSEMLKA--KAKFVLILDDMWEAF--PLEEVGIP--------EPS----------EENG 271 (929)
Q Consensus 214 i~~~l~~~~~~~~~~~~~~~~l~~~l~~--~~~~LlvlDdv~~~~--~~~~l~~~--------~~~----------~~~g 271 (929)
.+.. .++.+|+|||+.... ..+.+... ... ...+
T Consensus 83 ------------------------~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~ 138 (324)
T 1hqc_A 83 ------------------------ILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPR 138 (324)
T ss_dssp ------------------------HHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCC
T ss_pred ------------------------HHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCC
Confidence 1111 346688888886532 11111000 000 0123
Q ss_pred cEEEEEeCccc-c----cccCCcceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHHhhh
Q 042574 272 CKLVITTRSLG-V----SRSMDCKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVASCM 346 (929)
Q Consensus 272 s~ilvTtR~~~-v----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~L 346 (929)
..+|.||.... + ...+ ...+.+.+++.++..+++...+..... .-.++....+++.++|.|-.+..+...+
T Consensus 139 ~~~i~~t~~~~~~~~~l~~R~-~~~i~l~~~~~~e~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 139 FTLIGATTRPGLITAPLLSRF-GIVEHLEYYTPEELAQGVMRDARLLGV---RITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CEEEEEESCCSSCSCSTTTTC-SCEEECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEEEeCCCcccCCHHHHhcc-cEEEecCCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 46666666432 2 1222 123899999999999999887654322 1235677889999999998877665443
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.64 E-value=6.1e-08 Score=105.86 Aligned_cols=96 Identities=21% Similarity=0.238 Sum_probs=44.8
Q ss_pred EecCC-CCcccCcccccccccceeecccccccccCc--cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCC
Q 042574 552 NLSHT-NIEVLPSSVSNLTNLRSLLLRWCRRLKRVP--SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPL 627 (929)
Q Consensus 552 ~l~~~-~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~ 627 (929)
+.+++ .++.+|. +..+.+|++|+|++++.+..+| .+++|++|++|+|++|.|+.+|+. +.+|++|++|+|++|.+
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 44443 4444444 4444444444444311222222 244455555555555555544432 45555555555555555
Q ss_pred ccCCCCccCCCCCccEEEeecC
Q 042574 628 KKFPTGILPRLRNLYKLKLSFG 649 (929)
Q Consensus 628 ~~~~~~~l~~l~~L~~L~l~~~ 649 (929)
+.+|+..+..++ |+.|++.+|
T Consensus 93 ~~~~~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 93 ESLSWKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp SCCCSTTTCSCC-CCEEECCSS
T ss_pred ceeCHHHcccCC-ceEEEeeCC
Confidence 555554444443 555555544
No 159
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.60 E-value=5.5e-08 Score=105.19 Aligned_cols=184 Identities=11% Similarity=0.147 Sum_probs=108.7
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHh
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATAL 218 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l 218 (929)
..++|+ +..++.+..++..+..+.+.|+|++|+||||+|+.+++...... .-...+.+..++..+...+. ..+..+
T Consensus 25 ~~~~g~--~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~ 100 (327)
T 1iqp_A 25 DDIVGQ--EHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN-WRHNFLELNASDERGINVIR-EKVKEF 100 (327)
T ss_dssp TTCCSC--HHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGG-HHHHEEEEETTCHHHHHTTH-HHHHHH
T ss_pred HHhhCC--HHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-ccCceEEeeccccCchHHHH-HHHHHH
Confidence 568998 67788888888777766699999999999999999998862211 00112333332211111110 000000
Q ss_pred cCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEEEeCccc-ccccC--CcceEe
Q 042574 219 KQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVITTRSLG-VSRSM--DCKEIG 293 (929)
Q Consensus 219 ~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~-v~~~~--~~~~~~ 293 (929)
... ..+..+++.++|+||++... ..+.+...+.....++++|+||.... +.... ....+.
T Consensus 101 ~~~---------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~ 165 (327)
T 1iqp_A 101 ART---------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFR 165 (327)
T ss_dssp HHS---------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEE
T ss_pred Hhh---------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEE
Confidence 000 00112568899999997632 22223222222235678888887643 11111 112389
Q ss_pred cccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHHh
Q 042574 294 VELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVAS 344 (929)
Q Consensus 294 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~ 344 (929)
+.+++.++..+++...+..... .-.++....|++.++|.|..+..+..
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 166 FRPLRDEDIAKRLRYIAENEGL---ELTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTC---EECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 9999999999999877644321 22356778899999999986655443
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.53 E-value=1.6e-07 Score=102.40 Aligned_cols=75 Identities=13% Similarity=0.227 Sum_probs=35.4
Q ss_pred EEcccC-CCCcCCCCCCCCCCcccEEEccc-CCcCccCcHHHHccCCCCcEEEecCCCCcccCc-ccccccccceeeccc
Q 042574 502 VSLMDN-HIEEIPSNMSPHCKILSTLLLQR-NGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPS-SVSNLTNLRSLLLRW 578 (929)
Q Consensus 502 L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~ 578 (929)
++.+++ .+..+|. +..+++|+.|+|++ |. +..++...|.++++|++|+|++|.++.+|. .+.+|++|++|+|++
T Consensus 13 v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALDSLHH--LPGAENLTELYIENQQH-LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCTTTTT--SCSCSCCSEEECCSCSS-CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCCccCC--CCCCCCeeEEEccCCCC-CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 344444 4555554 23445555555553 33 444444444455555555555555554332 334455555555554
Q ss_pred c
Q 042574 579 C 579 (929)
Q Consensus 579 ~ 579 (929)
|
T Consensus 90 N 90 (347)
T 2ifg_A 90 N 90 (347)
T ss_dssp S
T ss_pred C
Confidence 4
No 161
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.46 E-value=8.2e-07 Score=95.52 Aligned_cols=179 Identities=10% Similarity=0.180 Sum_probs=107.4
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCc-EEEEEEECCCCCHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFN-VVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
.+++|+ +..++.+..++..+..+.+.|+|++|+||||+|+.+++.... ..+. ..+.+..+...+...+..
T Consensus 17 ~~~~g~--~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~----- 87 (319)
T 2chq_A 17 DEVVGQ--DEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG--ENWRDNFIEMNASDERGIDVVRH----- 87 (319)
T ss_dssp GGSCSC--HHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHT--TCHHHHCEEEETTSTTCTTTSSH-----
T ss_pred HHHhCC--HHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcC--CcccCCeEEEeCccccChHHHHH-----
Confidence 678998 677888888887776656999999999999999999987621 1111 123334333211111000
Q ss_pred hcCCCCCCccHHHHHHHHHHH--HHhcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEEEeCccc-ccccC--Ccc
Q 042574 218 LKQSLPENEDKVRRAGRLSEM--LKAKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVITTRSLG-VSRSM--DCK 290 (929)
Q Consensus 218 l~~~~~~~~~~~~~~~~l~~~--l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~-v~~~~--~~~ 290 (929)
........ +..+++.++|+||++... ..+.+...+.....+.++|+||.... +...+ .+.
T Consensus 88 -------------~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 88 -------------KIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (319)
T ss_dssp -------------HHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCE
T ss_pred -------------HHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCe
Confidence 00001000 012468899999997532 22333333333345677888876543 21111 122
Q ss_pred eEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHH
Q 042574 291 EIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTV 342 (929)
Q Consensus 291 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 342 (929)
.+.+.+++.++..+++...+..... .-.++....+++.++|.+-.+...
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~---~i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 155 VFRFKPVPKEAMKKRLLEICEKEGV---KITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCC---CBCHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3899999999999999877654321 123556778899999998765443
No 162
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.43 E-value=3e-07 Score=90.68 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=41.1
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
..++|| +..++++.+.+.....+.+.|+|++|+|||++|+.+++...
T Consensus 22 ~~~~g~--~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 22 DPVIGR--DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp CCCCSC--HHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred cccccc--hHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 568998 67888999998877777889999999999999999999873
No 163
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.39 E-value=1.5e-08 Score=111.08 Aligned_cols=153 Identities=12% Similarity=0.071 Sum_probs=103.1
Q ss_pred ccccEEEcccCCCCcC-----CCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCccc-----Cccc-
Q 042574 497 ENLERVSLMDNHIEEI-----PSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVL-----PSSV- 565 (929)
Q Consensus 497 ~~l~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-----p~~i- 565 (929)
++++.|++++|.+... ...+...+++|+.|++++|.....-...++..+++|++|+|++|.++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4678889988876632 1122223468999999998733322333344567899999999988632 1222
Q ss_pred ccccccceeeccccccccc-----Cc-cccccCCCCEEEccCCCCcc-----ccccccCCCCCCEEEccCCCCccCCCC-
Q 042574 566 SNLTNLRSLLLRWCRRLKR-----VP-SVAKLLALQYLDLERTWIEE-----VPEGMEMLENLSHLYLSSPPLKKFPTG- 633 (929)
Q Consensus 566 ~~l~~L~~L~l~~~~~~~~-----~~-~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~~~~~~- 633 (929)
...++|++|+|++|.. +. ++ .+...++|++|+|++|.|.. ++..+...++|++|++++|.++.....
T Consensus 152 ~~~~~L~~L~Ls~n~l-~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQCQITTLRLSNNPL-TAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp STTCCCCEEECCSSCC-HHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred hcCCccceeeCCCCCC-ChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2457899999998853 32 22 35678889999999998773 345567778899999999887643221
Q ss_pred ---ccCCCCCccEEEeecCC
Q 042574 634 ---ILPRLRNLYKLKLSFGN 650 (929)
Q Consensus 634 ---~l~~l~~L~~L~l~~~~ 650 (929)
.+...++|++|++++|.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHhCCCCCEEeccCCC
Confidence 23456789999998774
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.36 E-value=5.4e-06 Score=91.65 Aligned_cols=143 Identities=16% Similarity=0.238 Sum_probs=93.8
Q ss_pred cccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceeecc
Q 042574 498 NLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLR 577 (929)
Q Consensus 498 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~ 577 (929)
+++.+.+..+ +..++...|.++ +|+.+.+..+ +..++...|.++.+|+.+++.+|.++.+|.....+.+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~--l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPST--LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTT--CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCC--ccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence 4666666544 666666666554 5777777652 56666666777777777777777777776655456777777776
Q ss_pred cccccccCc--cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecC
Q 042574 578 WCRRLKRVP--SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFG 649 (929)
Q Consensus 578 ~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 649 (929)
.+ ++.++ .+.++.+|+.+++..+ ++.++.. +.+ .+|+.+.+ .+.++.++...|.++++|+.+.+..+
T Consensus 212 ~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 212 VT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp TT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESS
T ss_pred Cc--hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCc
Confidence 42 55555 4677777777777653 5555554 333 67777777 34566677777777777777777643
No 165
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.34 E-value=1.7e-06 Score=95.30 Aligned_cols=191 Identities=14% Similarity=0.177 Sum_probs=105.0
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
..++|+ +..++.+...+..+. .+.+.|+|++|+||||+|+.+++...... .+. ............+...
T Consensus 16 ~~~vg~--~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~-------~~~~~~~~~~~~~~~~ 85 (373)
T 1jr3_A 16 ADVVGQ--EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-GIT-------ATPCGVCDNCREIEQG 85 (373)
T ss_dssp TTSCSC--HHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTT-CSC-------SSCCSSSHHHHHHHTS
T ss_pred hhccCc--HHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCC-CCC-------CCCCcccHHHHHHhcc
Confidence 568998 677778888876654 46789999999999999999998763211 110 0000000000111100
Q ss_pred hc-----CCCCCCccHHHHHHHHHHHHH----hcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEEEeCccc-ccc
Q 042574 218 LK-----QSLPENEDKVRRAGRLSEMLK----AKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVITTRSLG-VSR 285 (929)
Q Consensus 218 l~-----~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~-v~~ 285 (929)
-. ...... ........+...+. .+++.++|+||++... ..+.+...+.....+..+|++|.... +..
T Consensus 86 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 164 (373)
T 1jr3_A 86 RFVDLIEIDAASR-TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (373)
T ss_dssp CCSSCEEEETTCS-CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCH
T ss_pred CCCceEEeccccc-CCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcH
Confidence 00 000000 00001112222221 2457899999997532 22222222222234567777776432 211
Q ss_pred cC--CcceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHHH
Q 042574 286 SM--DCKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTVA 343 (929)
Q Consensus 286 ~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 343 (929)
.. .+..+.+.+++.++..+++...+..... ...++.+..|++.++|.|..+..+.
T Consensus 165 ~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~---~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 165 TILSRCLQFHLKALDVEQIRHQLEHILNEEHI---AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC---CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 11 1223899999999999999877644321 1224567789999999998776554
No 166
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.26 E-value=1.8e-07 Score=102.55 Aligned_cols=156 Identities=18% Similarity=0.190 Sum_probs=107.4
Q ss_pred CCcccEEEcccCCcCccCcHHHHc-----cCCCCcEEEecCCCCcc--cCcccccccccceeecccccccccCc--cc--
Q 042574 520 CKILSTLLLQRNGYLQRIPECFFM-----HMRGLKVLNLSHTNIEV--LPSSVSNLTNLRSLLLRWCRRLKRVP--SV-- 588 (929)
Q Consensus 520 ~~~L~~L~l~~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~~~~~~--~~-- 588 (929)
.++|+.|++++|. +.......+. ..++|++|+|++|.++. +..-...+.+|++|+|++|.. +..+ .+
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l-~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL-GPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCC-CHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCC-CHHHHHHHHH
Confidence 4679999999997 4332221112 33799999999999863 222234577899999999843 3322 22
Q ss_pred ---cccCCCCEEEccCCCCcc-----ccccccCCCCCCEEEccCCCCccCC----CCccCCCCCccEEEeecCCchhccc
Q 042574 589 ---AKLLALQYLDLERTWIEE-----VPEGMEMLENLSHLYLSSPPLKKFP----TGILPRLRNLYKLKLSFGNEALRET 656 (929)
Q Consensus 589 ---~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~ 656 (929)
...++|++|++++|.++. ++..+..+++|++|++++|.+.... ...+...++|++|++++|... ..+
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~-~~g 227 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG-DTA 227 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC-HHH
T ss_pred HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC-HHH
Confidence 346889999999998874 4555678899999999999986532 223567789999999987532 222
Q ss_pred H----HHHhcccccccEeEEEeccccc
Q 042574 657 V----EEAARLSDGLDSFEGHFSELKD 679 (929)
Q Consensus 657 ~----~~l~~l~~~L~~L~~~~~~l~~ 679 (929)
. ..+...+ +|+.|++..+.+..
T Consensus 228 ~~~l~~~L~~~~-~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 228 ALALARAAREHP-SLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHHHCS-SCCEEECTTSSCCH
T ss_pred HHHHHHHHHhCC-CCCEEeccCCCCCH
Confidence 2 3344456 88888887665543
No 167
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.25 E-value=4.2e-06 Score=93.63 Aligned_cols=182 Identities=17% Similarity=0.237 Sum_probs=104.9
Q ss_pred cccc-ccchHHHHHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHH
Q 042574 139 ATLA-GKKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIAT 216 (929)
Q Consensus 139 ~~~v-Gr~~~~~~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 216 (929)
..|+ |.........+......+. ...+.|+|++|+||||||+.+++......... .+++++.. .+...+..
T Consensus 105 d~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~-~v~~v~~~------~~~~~~~~ 177 (440)
T 2z4s_A 105 ENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDL-RVMYITSE------KFLNDLVD 177 (440)
T ss_dssp GGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSS-CEEEEEHH------HHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCC-eEEEeeHH------HHHHHHHH
Confidence 4455 7544444555555554443 67899999999999999999999874321122 34555433 23344444
Q ss_pred HhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC----ccccccCCCC-CCCCcEEEEEeCccc---------
Q 042574 217 ALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP----LEEVGIPEPS-EENGCKLVITTRSLG--------- 282 (929)
Q Consensus 217 ~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----~~~l~~~~~~-~~~gs~ilvTtR~~~--------- 282 (929)
.+... . ...+...+ ..++-+|+|||++.... .+.+...+.. ...|..||+||.+..
T Consensus 178 ~~~~~-----~----~~~~~~~~-~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~ 247 (440)
T 2z4s_A 178 SMKEG-----K----LNEFREKY-RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_dssp HHHTT-----C----HHHHHHHH-TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHH
T ss_pred HHHcc-----c----HHHHHHHh-cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHH
Confidence 44321 0 11222222 22577999999975332 1222211110 134678888887632
Q ss_pred ccccCCcce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHH
Q 042574 283 VSRSMDCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIV 340 (929)
Q Consensus 283 v~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 340 (929)
+...+.... +.+++++.++..+++.+.+.......+ ++....|++.++|.+-.+.
T Consensus 248 L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 248 LVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCHHHHH
T ss_pred HHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHH
Confidence 112222223 789999999999999887653322122 2346678888888875443
No 168
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.23 E-value=2.1e-06 Score=93.78 Aligned_cols=192 Identities=10% Similarity=0.148 Sum_probs=107.1
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhh-cCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKE-TNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
..++|+ +..++.+..++..+..+.+.|+|++|+||||+|+.+++..... ...+ .+..+..+.......+...+...
T Consensus 37 ~~i~g~--~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 113 (353)
T 1sxj_D 37 DEVTAQ--DHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKS-RILELNASDERGISIVREKVKNF 113 (353)
T ss_dssp TTCCSC--CTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT-SEEEECSSSCCCHHHHTTHHHHH
T ss_pred HHhhCC--HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCccccc-ceEEEccccccchHHHHHHHHHH
Confidence 678998 5667888888887765559999999999999999999886321 1111 13334444333333322222111
Q ss_pred hcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEEEeCccc-ccccCC--cceE
Q 042574 218 LKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVITTRSLG-VSRSMD--CKEI 292 (929)
Q Consensus 218 l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~-v~~~~~--~~~~ 292 (929)
............ ......+++-++++|++.... ....+...+.......++|++|.... +..... ...+
T Consensus 114 ~~~~~~~~~~~~------~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i 187 (353)
T 1sxj_D 114 ARLTVSKPSKHD------LENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKF 187 (353)
T ss_dssp HHSCCCCCCTTH------HHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEE
T ss_pred hhhcccccchhh------cccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceE
Confidence 111110000000 000012356799999986532 12222211111123566777765432 221111 1138
Q ss_pred ecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHH
Q 042574 293 GVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTV 342 (929)
Q Consensus 293 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 342 (929)
.+.+++.++....+...+..... .-.++..+.|++.++|.|-.+..+
T Consensus 188 ~~~~~~~~~~~~~l~~~~~~~~~---~i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 188 RFKALDASNAIDRLRFISEQENV---KCDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHTSSCHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 89999999999999887644321 123567788999999998765443
No 169
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.22 E-value=6.7e-06 Score=90.88 Aligned_cols=145 Identities=14% Similarity=0.226 Sum_probs=91.0
Q ss_pred ccccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcc-cccccccce
Q 042574 495 WEENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSS-VSNLTNLRS 573 (929)
Q Consensus 495 ~~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~ 573 (929)
.+.+++.+.+..|.+..++...|. +.+|+.+.+..+ +..++...|.++++|+.+++..+ ++.++.. +.+ .+|+.
T Consensus 178 ~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 178 YCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITT 252 (401)
T ss_dssp TCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSE
T ss_pred CcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccE
Confidence 345667777776667767666664 567777777643 56666666677777777777653 4555433 333 56677
Q ss_pred eecccccccccCc--cccccCCCCEEEccCCCCc-----ccccc-ccCCCCCCEEEccCCCCccCCCCccCCCCCccEEE
Q 042574 574 LLLRWCRRLKRVP--SVAKLLALQYLDLERTWIE-----EVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLK 645 (929)
Q Consensus 574 L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-----~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 645 (929)
+.+.. .++.++ .+.++.+|+.+++.++.+. .++.. +.++++|+.+.+. +.++.++.+.|.++++|+.+.
T Consensus 253 i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~ 329 (401)
T 4fdw_A 253 VKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLT 329 (401)
T ss_dssp EEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEE
T ss_pred EEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEE
Confidence 76643 344444 4667777777777666443 34443 6667777777776 346666666677777777777
Q ss_pred ee
Q 042574 646 LS 647 (929)
Q Consensus 646 l~ 647 (929)
+.
T Consensus 330 lp 331 (401)
T 4fdw_A 330 IP 331 (401)
T ss_dssp EC
T ss_pred EC
Confidence 65
No 170
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.21 E-value=2.5e-05 Score=81.53 Aligned_cols=177 Identities=14% Similarity=0.150 Sum_probs=91.5
Q ss_pred CCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHH
Q 042574 159 GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEM 238 (929)
Q Consensus 159 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 238 (929)
....+.+.|+|++|+|||++|+.+++... ..| +.+..+... ++ ............+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~---~~~---~~i~~~~~~------------~g---~~~~~~~~~~~~~~~~ 119 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESN---FPF---IKICSPDKM------------IG---FSETAKCQAMKKIFDD 119 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHT---CSE---EEEECGGGC------------TT---CCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhC---CCE---EEEeCHHHh------------cC---CchHHHHHHHHHHHHH
Confidence 44577899999999999999999998751 222 222222210 00 0001111122233333
Q ss_pred HHhcCcEEEEEecCCCcC---------C---ccccccCCC---CCCCCcEEEEEeCccccccc---CCc-ce-EecccCC
Q 042574 239 LKAKAKFVLILDDMWEAF---------P---LEEVGIPEP---SEENGCKLVITTRSLGVSRS---MDC-KE-IGVELLS 298 (929)
Q Consensus 239 l~~~~~~LlvlDdv~~~~---------~---~~~l~~~~~---~~~~gs~ilvTtR~~~v~~~---~~~-~~-~~l~~L~ 298 (929)
....++.+|+|||++... . ++.+...+. .......||.||........ .+. .. +.+++++
T Consensus 120 ~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~ 199 (272)
T 1d2n_A 120 AYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIA 199 (272)
T ss_dssp HHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEE
T ss_pred HHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCcc
Confidence 334568999999986420 0 111111111 12234456677776532111 111 22 8888898
Q ss_pred H-HHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCC------ccHHHHHHHhhhcCCCChhHHHHHHHHHhhh
Q 042574 299 Q-EEALNLFLDKVRISTSQIPNLDKEIINSVVEECDG------LPLAIVTVASCMRGVDEIHEWRNALNELRGL 365 (929)
Q Consensus 299 ~-~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g------~Plai~~~~~~L~~~~~~~~w~~~l~~l~~~ 365 (929)
. ++...++.+... . ..+....+++.+.| ++-++..+-.... ......+..+++.+...
T Consensus 200 ~r~~i~~i~~~~~~-----~---~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~-~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 200 TGEQLLEALELLGN-----F---KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ-MDPEYRVRKFLALLREE 264 (272)
T ss_dssp EHHHHHHHHHHHTC-----S---CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT-SCGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCC-----C---CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh-hchHHHHHHHHHHHHHc
Confidence 8 666666654311 1 24456778888877 3444443333322 23345666666665443
No 171
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.21 E-value=4.2e-07 Score=93.32 Aligned_cols=172 Identities=13% Similarity=0.136 Sum_probs=100.8
Q ss_pred ccccccc-hHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 139 ATLAGKK-TKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 139 ~~~vGr~-~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
..++|+. .+..++.+..+...+..+.+.|+|++|+||||+|+.+++..... ...+.|+.+++-.+. +.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~---~~~~~~~~~~~~~~~------~~-- 96 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL---ERRSFYIPLGIHASI------ST-- 96 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEEGGGGGGS------CG--
T ss_pred hhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHH------HH--
Confidence 5677632 24566667776666567889999999999999999999987322 234566665432110 00
Q ss_pred hcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC----ccccccCCCC-CCCC-cEEEEEeCcccc--------
Q 042574 218 LKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP----LEEVGIPEPS-EENG-CKLVITTRSLGV-------- 283 (929)
Q Consensus 218 l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----~~~l~~~~~~-~~~g-s~ilvTtR~~~v-------- 283 (929)
...+.+ .++.+||+||++.... .+.+...+.. ...+ .++|+||+...-
T Consensus 97 ----------------~~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 158 (242)
T 3bos_A 97 ----------------ALLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPD 158 (242)
T ss_dssp ----------------GGGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHH
T ss_pred ----------------HHHHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhh
Confidence 000111 3467899999975322 1112111100 0112 247887774321
Q ss_pred -cccCCcce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHH
Q 042574 284 -SRSMDCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTV 342 (929)
Q Consensus 284 -~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 342 (929)
...+.... +.+.+++.++..+++...+..... .-.++....+++.++|.+-.+..+
T Consensus 159 l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 159 LVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL---QLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC---CCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred hhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHccCCHHHHHHH
Confidence 11111113 899999999999999887653321 123566778889999987665543
No 172
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.19 E-value=1.5e-05 Score=84.08 Aligned_cols=175 Identities=15% Similarity=0.163 Sum_probs=97.7
Q ss_pred ccccccchHHHHHHHHHHhcC-------------CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCC
Q 042574 139 ATLAGKKTKKVVERIWEDLMG-------------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 205 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 205 (929)
..++|. +..++++.+.+.. ...+-+.|+|++|+|||++|+.+++... . ..+.+..+.-.
T Consensus 17 ~~i~G~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~---~---~~~~v~~~~~~ 88 (285)
T 3h4m_A 17 EDIGGL--EKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETN---A---TFIRVVGSELV 88 (285)
T ss_dssp GGSCSC--HHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTT---C---EEEEEEGGGGC
T ss_pred HHhcCH--HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhC---C---CEEEEehHHHH
Confidence 678997 5666666655532 3456799999999999999999998752 1 12333322211
Q ss_pred CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC----------C------ccccccCCC--C
Q 042574 206 DLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF----------P------LEEVGIPEP--S 267 (929)
Q Consensus 206 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~----------~------~~~l~~~~~--~ 267 (929)
+ .. ..........+.......++.+|+|||++... . +..+...+. .
T Consensus 89 ~--------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 89 K--------------KF--IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp C--------------CS--TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred H--------------hc--cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 0 00 11122233334444445567899999996420 0 111111110 1
Q ss_pred CCCCcEEEEEeCcccccc-----cCCcce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCC-ccHHHH
Q 042574 268 EENGCKLVITTRSLGVSR-----SMDCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDG-LPLAIV 340 (929)
Q Consensus 268 ~~~gs~ilvTtR~~~v~~-----~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plai~ 340 (929)
...+..||.||....... ...... +.++..+.++..+++...+.......... ...+++.+.| .|-.+.
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHH
Confidence 234567777877543221 112222 88999999999999988765432211222 3557777776 454444
Q ss_pred H
Q 042574 341 T 341 (929)
Q Consensus 341 ~ 341 (929)
.
T Consensus 229 ~ 229 (285)
T 3h4m_A 229 A 229 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 173
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.13 E-value=1.4e-05 Score=89.15 Aligned_cols=174 Identities=16% Similarity=0.188 Sum_probs=99.6
Q ss_pred ccccccchHHHH---HHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCC-CCHHHHHHHH
Q 042574 139 ATLAGKKTKKVV---ERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LDLIKLQTEI 214 (929)
Q Consensus 139 ~~~vGr~~~~~~---~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i 214 (929)
..++|+ +..+ ..+...+..+..+.+.|+|++|+||||+|+.+++... .. ++.++.. .....+. .+
T Consensus 26 ~~ivGq--~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~---~~-----f~~l~a~~~~~~~ir-~~ 94 (447)
T 3pvs_A 26 AQYIGQ--QHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN---AD-----VERISAVTSGVKEIR-EA 94 (447)
T ss_dssp TTCCSC--HHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT---CE-----EEEEETTTCCHHHHH-HH
T ss_pred HHhCCc--HHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC---CC-----eEEEEeccCCHHHHH-HH
Confidence 678997 4444 5666777777778899999999999999999998752 11 2222221 2222211 11
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCc--CCccccccCCCCCCCCcEEE-EEeCccc--ccccC--
Q 042574 215 ATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEA--FPLEEVGIPEPSEENGCKLV-ITTRSLG--VSRSM-- 287 (929)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~il-vTtR~~~--v~~~~-- 287 (929)
+ .........+++.+|++|++... ...+.+...+.. + ...+| .||.+.. +...+
T Consensus 95 ~-----------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~-~v~lI~att~n~~~~l~~aL~s 155 (447)
T 3pvs_A 95 I-----------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-G-TITFIGATTENPSFELNSALLS 155 (447)
T ss_dssp H-----------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT-T-SCEEEEEESSCGGGSSCHHHHT
T ss_pred H-----------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-C-ceEEEecCCCCcccccCHHHhC
Confidence 1 11111112457899999999753 233333333321 2 22333 3555532 21111
Q ss_pred CcceEecccCCHHHHHHHHHhhhcccCC----CCCcchHHHHHHHHHhcCCccHHHHHH
Q 042574 288 DCKEIGVELLSQEEALNLFLDKVRISTS----QIPNLDKEIINSVVEECDGLPLAIVTV 342 (929)
Q Consensus 288 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~----~~~~~~~~~~~~i~~~c~g~Plai~~~ 342 (929)
....+.+.+++.++...++.+.+..... ....-.++..+.+++.++|.+-.+..+
T Consensus 156 R~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 156 RARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred ceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 1223889999999999999887654111 011223567788888899987655433
No 174
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.13 E-value=6.2e-05 Score=83.31 Aligned_cols=66 Identities=18% Similarity=0.366 Sum_probs=40.9
Q ss_pred CCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCc-ccccccccceeecc
Q 042574 509 IEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPS-SVSNLTNLRSLLLR 577 (929)
Q Consensus 509 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~ 577 (929)
+..++...|.+|.+|+.+.+..+ +..++...|.++.+|+.+++..+ ++.++. .+.++.+|+.+.+.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred EeEhHHHHhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 44566666667777777777643 56666666677777777777644 444433 34556666665554
No 175
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.10 E-value=1.3e-05 Score=91.99 Aligned_cols=188 Identities=12% Similarity=0.118 Sum_probs=103.3
Q ss_pred ccccccchHHHHHHHHHHhcC-----------------CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEE
Q 042574 139 ATLAGKKTKKVVERIWEDLMG-----------------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 201 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~-----------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 201 (929)
.+++|+ +..++++.+++.. +..+.+.|+|++|+||||+|+.+++.. .+ .++.+.+
T Consensus 39 ~dliG~--~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-----~~-~~i~in~ 110 (516)
T 1sxj_A 39 QQVCGN--KGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-----GY-DILEQNA 110 (516)
T ss_dssp GGCCSC--HHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT-----TC-EEEEECT
T ss_pred HHhcCC--HHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc-----CC-CEEEEeC
Confidence 678998 6777888888764 134789999999999999999999875 12 2445555
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC--c---cccccCCCCCCCCcEEEE
Q 042574 202 SQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP--L---EEVGIPEPSEENGCKLVI 276 (929)
Q Consensus 202 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~--~---~~l~~~~~~~~~gs~ilv 276 (929)
++...... ....+.......... ........ .....+++.+||+|+++.... . ..+...+. ..+..||+
T Consensus 111 s~~~~~~~-~~~~i~~~~~~~~~~-~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~--~~~~~iIl 184 (516)
T 1sxj_A 111 SDVRSKTL-LNAGVKNALDNMSVV-GYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPLIL 184 (516)
T ss_dssp TSCCCHHH-HHHTGGGGTTBCCST-TTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCEEE
T ss_pred CCcchHHH-HHHHHHHHhccccHH-HHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHH--hcCCCEEE
Confidence 55444322 222221111100000 00000000 000135689999999975321 1 12211111 12334555
Q ss_pred EeCccc---ccccCC-cceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCc-cHHHHHHH
Q 042574 277 TTRSLG---VSRSMD-CKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGL-PLAIVTVA 343 (929)
Q Consensus 277 TtR~~~---v~~~~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~~ 343 (929)
++.... +..... +..+.+.+++.++..+.+...+........ ++....|++.++|. +-++..+.
T Consensus 185 i~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~---~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 185 ICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD---PNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp EESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHTTTCHHHHHHHHT
T ss_pred EEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 554422 222111 122899999999999999877654332122 23467788999985 45555543
No 176
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.08 E-value=1.1e-05 Score=88.62 Aligned_cols=48 Identities=21% Similarity=0.339 Sum_probs=36.2
Q ss_pred ccccccch-HHHHHHHHHHhcCCCe--eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKT-KKVVERIWEDLMGDKV--TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~-~~~~~~l~~~l~~~~~--~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..++|++. .+.+..+...+..+.. +.+.|+|++|+|||++|+.+++..
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 67999843 1223445666665543 589999999999999999999987
No 177
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.06 E-value=0.00011 Score=76.11 Aligned_cols=180 Identities=13% Similarity=0.147 Sum_probs=94.4
Q ss_pred ccccccch-HHHHHHHHHHhcC---------CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHH
Q 042574 139 ATLAGKKT-KKVVERIWEDLMG---------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLI 208 (929)
Q Consensus 139 ~~~vGr~~-~~~~~~l~~~l~~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 208 (929)
.+++|.+. .+.+.+++.++.. ...+-|.|+|++|+|||++|+.+++... .. .+.+..+.-.+
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~---~~---~~~~~~~~~~~-- 77 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ---VP---FLAMAGAEFVE-- 77 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT---CC---EEEEETTTTSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC---CC---EEEechHHHHh--
Confidence 56788732 2223333444332 2245688999999999999999999762 22 23444433211
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC-------------Cc----cccccCCC--CCC
Q 042574 209 KLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF-------------PL----EEVGIPEP--SEE 269 (929)
Q Consensus 209 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~-------------~~----~~l~~~~~--~~~ 269 (929)
.. ..........+........+.+|+|||++... .. ..+...+. ...
T Consensus 78 ------------~~--~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 78 ------------VI--GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp ------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred ------------hc--cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 00 01112222333333334568999999997531 11 11111111 112
Q ss_pred CCcEEEEEeCcccc-cccC----Ccce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccH-HHHHH
Q 042574 270 NGCKLVITTRSLGV-SRSM----DCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPL-AIVTV 342 (929)
Q Consensus 270 ~gs~ilvTtR~~~v-~~~~----~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~ 342 (929)
.+..||.||..... .... .... +.++..+.++..+++...+..... ..........+++.+.|.+- .+..+
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~--~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL--TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC--CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC--CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 35566777755331 1111 1123 788999999999999887654322 22222235778888888754 44333
No 178
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.03 E-value=3.6e-06 Score=79.95 Aligned_cols=92 Identities=10% Similarity=0.130 Sum_probs=51.2
Q ss_pred ceeEEEEecCCCccccchhchhhhcCCccEEEEecCcchhhhhccCcchhhhhhcccccccc-ccCCCcceeeccccccc
Q 042574 771 DLKVLSFVHCHNLKNLFSLWLLPALQNLEVLKVYGCDSIKEIIAVEDEETEKELATNTIINT-VTLPRLKKLRFYFLREF 849 (929)
Q Consensus 771 ~L~~L~L~~c~~l~~l~~~~~l~~L~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~~~~~~~-~~~p~L~~L~l~~~~~L 849 (929)
+|+.|++++|. +++. .+..+..+++|++|++++|..++.---. ... .. ...++|+.|+|++|+++
T Consensus 62 ~L~~LDLs~~~-Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~-------~L~-----~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLE-------RLS-----QLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp CEEEEEEESCC-CCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHH-------HHH-----TCHHHHHHCCEEEEESCTTC
T ss_pred eEeEEeCcCCC-ccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHH-------HHH-----hcccccCCCCEEEcCCCCcC
Confidence 57777777765 5542 2233456667777777777655432100 000 00 01246777777777766
Q ss_pred ccccccCccccCCCccEEEEeccCCCcc
Q 042574 850 KRFCSNNGVLVCNSLQEIKVRGCPKLKR 877 (929)
Q Consensus 850 ~~i~~~~~~~~~p~L~~L~I~~C~~L~~ 877 (929)
++-... ....+++|+.|+|++||+++.
T Consensus 128 TD~Gl~-~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 128 TDKGII-ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp CHHHHH-HGGGCTTCCEEEEESCTTCCC
T ss_pred CHHHHH-HHhcCCCCCEEECCCCCCCCc
Confidence 654331 223467777777777777775
No 179
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.01 E-value=1.5e-05 Score=86.87 Aligned_cols=193 Identities=13% Similarity=0.134 Sum_probs=100.7
Q ss_pred ccccccchHHHHHHHHHHh-cCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhc-CC--CcE-------------------
Q 042574 139 ATLAGKKTKKVVERIWEDL-MGDKVTKIGVWGMGGIGKTTIMKEINNRLQKET-NK--FNV------------------- 195 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l-~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~--f~~------------------- 195 (929)
..++|+ +..++.+..++ ..+..+.+.|+|+.|+||||+|+.++....... +. ++.
T Consensus 14 ~~~vg~--~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 14 NALSHN--EELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSP 91 (354)
T ss_dssp GGCCSC--HHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECS
T ss_pred HHhcCC--HHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeeccc
Confidence 678997 67778888887 666544499999999999999999988642111 00 000
Q ss_pred -EEEEEECCCC-CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC--ccccccCCCCCCCC
Q 042574 196 -VIWVTVSQPL-DLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP--LEEVGIPEPSEENG 271 (929)
Q Consensus 196 -~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~g 271 (929)
.+.+..+... ......++++..+.....-. . .. .+ ..+ .+++-++|||++..... .+.+...+.....+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~---~~-~l-s~l-~~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 92 YHLEITPSDMGNNDRIVIQELLKEVAQMEQVD-F---QD-SK-DGL-AHRYKCVIINEANSLTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp SEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTTT
T ss_pred ceEEecHhhcCCcchHHHHHHHHHHHHhcccc-c---cc-cc-ccc-CCCCeEEEEeCccccCHHHHHHHHHHHHhhcCC
Confidence 0111111100 00001222222221110000 0 00 00 001 23577999999976211 11121111111235
Q ss_pred cEEEEEeCcc-cccccC--CcceEecccCCHHHHHHHHHhhhcccCCCCCcch-HHHHHHHHHhcCCccHHHHHHH
Q 042574 272 CKLVITTRSL-GVSRSM--DCKEIGVELLSQEEALNLFLDKVRISTSQIPNLD-KEIINSVVEECDGLPLAIVTVA 343 (929)
Q Consensus 272 s~ilvTtR~~-~v~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~-~~~~~~i~~~c~g~Plai~~~~ 343 (929)
..+|+||.+. .+.... .+..+++.+++.++..+.+...+..... .-. ++.+..|++.++|.+-.+..+.
T Consensus 165 ~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 165 IRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI---QLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC---EECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC---CCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 6777777653 222111 1233899999999999999887654321 111 3566788999999886554443
No 180
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.99 E-value=7.8e-05 Score=81.03 Aligned_cols=178 Identities=16% Similarity=0.169 Sum_probs=98.5
Q ss_pred ccccccchHHHHHHHHHHhc------------CCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCC
Q 042574 139 ATLAGKKTKKVVERIWEDLM------------GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 206 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 206 (929)
..++|. +..++.+.+.+. ....+.|.|+|++|+|||++|+.+++... . ..+.+.++.-.+
T Consensus 84 ~~i~G~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~---~---~~~~i~~~~l~~ 155 (357)
T 3d8b_A 84 EDIAGV--EFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG---A---TFFSISASSLTS 155 (357)
T ss_dssp GGSCSC--HHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT---C---EEEEEEGGGGCC
T ss_pred HHhCCh--HHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC---C---eEEEEehHHhhc
Confidence 678897 555666665552 12357899999999999999999988651 1 234454432211
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC-------------ccccccCCC----CCC
Q 042574 207 LIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP-------------LEEVGIPEP----SEE 269 (929)
Q Consensus 207 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~~~----~~~ 269 (929)
.. ..........+.......++.+|+||+++.... ...+...+. ...
T Consensus 156 --------------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 219 (357)
T 3d8b_A 156 --------------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSE 219 (357)
T ss_dssp --------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CC
T ss_pred --------------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCC
Confidence 00 011222223333333345689999999953200 111111111 112
Q ss_pred CCcEEEEEeCccc-ccccC--Ccce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCc-cHHHHHHH
Q 042574 270 NGCKLVITTRSLG-VSRSM--DCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGL-PLAIVTVA 343 (929)
Q Consensus 270 ~gs~ilvTtR~~~-v~~~~--~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~~ 343 (929)
.+..||.||.... +.... .... +.+...+.++..+++...+..... .-..+....|++.+.|. +-.+..+.
T Consensus 220 ~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~---~l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 220 DRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC---CLSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp CCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB---CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC---CccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3445665665432 21110 1222 778888999999988876644321 11245677788888884 55555543
No 181
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.97 E-value=1.2e-05 Score=85.92 Aligned_cols=133 Identities=14% Similarity=0.130 Sum_probs=72.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLK 240 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 240 (929)
....|.|+|++|+|||++|+.+++.... .......-++.++.. .+...... ........+...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~-~~~~~~~~~~~~~~~------------~l~~~~~g--~~~~~~~~~~~~-- 128 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHR-LGYVRKGHLVSVTRD------------DLVGQYIG--HTAPKTKEVLKR-- 128 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHH-TTSSSSCCEEEECGG------------GTCCSSTT--CHHHHHHHHHHH--
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHh-cCCcCCCcEEEEcHH------------Hhhhhccc--ccHHHHHHHHHh--
Confidence 3457999999999999999999988732 222111122333211 01111111 111122222222
Q ss_pred hcCcEEEEEecCCCcC-----------CccccccCCCCCCCCcEEEEEeCccc----------ccccCCcceEecccCCH
Q 042574 241 AKAKFVLILDDMWEAF-----------PLEEVGIPEPSEENGCKLVITTRSLG----------VSRSMDCKEIGVELLSQ 299 (929)
Q Consensus 241 ~~~~~LlvlDdv~~~~-----------~~~~l~~~~~~~~~gs~ilvTtR~~~----------v~~~~~~~~~~l~~L~~ 299 (929)
.+.-+|+||+++... ....+...+.....+..||+||.... +...+. ..+.+++++.
T Consensus 129 -~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~-~~i~~~~~~~ 206 (309)
T 3syl_A 129 -AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIA-HHIEFPDYSD 206 (309)
T ss_dssp -HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEE-EEEEECCCCH
T ss_pred -cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCC-eEEEcCCcCH
Confidence 245699999997431 11222222222334567888876432 222221 2289999999
Q ss_pred HHHHHHHHhhhcc
Q 042574 300 EEALNLFLDKVRI 312 (929)
Q Consensus 300 ~~~~~Lf~~~~~~ 312 (929)
++..+++...+..
T Consensus 207 ~~~~~il~~~l~~ 219 (309)
T 3syl_A 207 EELFEIAGHMLDD 219 (309)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999877654
No 182
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.96 E-value=2e-05 Score=76.93 Aligned_cols=47 Identities=19% Similarity=0.297 Sum_probs=40.9
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
..++|| +.+++.+.+.+.....+.+.|+|++|+||||+|+.+++...
T Consensus 22 ~~~~g~--~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 22 DPVIGR--DTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp CCCCSC--HHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred chhhcc--hHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 568998 67888899988877677889999999999999999998863
No 183
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=7.1e-06 Score=77.91 Aligned_cols=91 Identities=14% Similarity=0.217 Sum_probs=67.3
Q ss_pred ccccceeeecccCcccccccCccccCcccccccccceeEEEEecCCCccccchhchhhh----cCCccEEEEecCcchhh
Q 042574 736 EDVQFLRMFEVSDVASLNDVLPREQGLVNIGKFSHDLKVLSFVHCHNLKNLFSLWLLPA----LQNLEVLKVYGCDSIKE 811 (929)
Q Consensus 736 ~~L~~L~i~~~~~~~~l~~~~~~~~~l~~l~~~~~~L~~L~L~~c~~l~~l~~~~~l~~----L~~L~~L~i~~c~~l~~ 811 (929)
..|+.|++++|. ++ ..++..+..++ +|++|+|++|..+++- .+..+.. .++|++|+|++|.+++.
T Consensus 61 ~~L~~LDLs~~~-It--------d~GL~~L~~~~-~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSC-IM--------SIGFDHMEGLQ-YVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCC-CC--------GGGGGGGTTCS-CCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCC-cc--------HHHHHHhcCCC-CCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 368899999986 44 34567777888 9999999999999873 2223333 24799999999988865
Q ss_pred hhccCcchhhhhhccccccccccCCCcceeecccccccccc
Q 042574 812 IIAVEDEETEKELATNTIINTVTLPRLKKLRFYFLREFKRF 852 (929)
Q Consensus 812 i~~~~~~~~~~~~~~~~~~~~~~~p~L~~L~l~~~~~L~~i 852 (929)
--- .....+|+|+.|+|++|+.+++.
T Consensus 130 ~Gl---------------~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 130 KGI---------------IALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHH---------------HHGGGCTTCCEEEEESCTTCCCH
T ss_pred HHH---------------HHHhcCCCCCEEECCCCCCCCch
Confidence 310 11225899999999999998875
No 184
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.94 E-value=8.8e-05 Score=79.43 Aligned_cols=177 Identities=17% Similarity=0.193 Sum_probs=100.0
Q ss_pred ccccccchHHHHHHHHHHhc----------C--CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCC
Q 042574 139 ATLAGKKTKKVVERIWEDLM----------G--DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 206 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~----------~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 206 (929)
..++|. +..++.+.+.+. . ...+-|.++|++|+|||+||+.+++... .. .+.++.+
T Consensus 18 ~di~G~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~---~~---~~~v~~~---- 85 (322)
T 3eie_A 18 EDVAGL--EGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN---ST---FFSVSSS---- 85 (322)
T ss_dssp GGSCSC--HHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT---CE---EEEEEHH----
T ss_pred HHhcCh--HHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC---CC---EEEEchH----
Confidence 678897 566666666551 1 1246799999999999999999998762 22 2333321
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC-------------ccccccC---CCCCCC
Q 042574 207 LIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP-------------LEEVGIP---EPSEEN 270 (929)
Q Consensus 207 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~---~~~~~~ 270 (929)
++ .. .. ..........+.......++.+|+||+++.... ...+... +.....
T Consensus 86 --~l----~~----~~--~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 --DL----VS----KW--MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp --HH----HT----TT--GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred --HH----hh----cc--cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 11 11 11 112233334444444455678999999974211 1111111 111234
Q ss_pred CcEEEEEeCcccc-cccC--Ccce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCc-cHHHHHH
Q 042574 271 GCKLVITTRSLGV-SRSM--DCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGL-PLAIVTV 342 (929)
Q Consensus 271 gs~ilvTtR~~~v-~~~~--~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~ 342 (929)
+..||.||..... ...+ .... +.+...+.++-.+++...+..... .........|++.+.|. +-.|..+
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~l~~la~~t~g~sg~di~~l 227 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC---VLTKEDYRTLGAMTEGYSGSDIAVV 227 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC---CCCHHHHHHHHHTTTTCCHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC---CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 5566667765322 1110 1112 778889999999999887754321 11234567788888874 5445443
No 185
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.94 E-value=3.5e-05 Score=83.34 Aligned_cols=168 Identities=12% Similarity=0.147 Sum_probs=95.7
Q ss_pred ccccccchHHHHHHHHHHhc-----CCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLM-----GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTE 213 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~-----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 213 (929)
..++|+ +..++.+..++. ......|.|+|++|+|||++|+.+++.. ...| +.+..+.......+
T Consensus 29 ~~iiG~--~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~---~~~~~~~~~~~~~~--- 97 (338)
T 3pfi_A 29 DGYIGQ--ESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM---SANI---KTTAAPMIEKSGDL--- 97 (338)
T ss_dssp GGCCSC--HHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCE---EEEEGGGCCSHHHH---
T ss_pred HHhCCh--HHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCe---EEecchhccchhHH---
Confidence 679998 555666666654 2345678999999999999999998865 1222 23333221111111
Q ss_pred HHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC---------ccccccC-----------CCCCCCCcE
Q 042574 214 IATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP---------LEEVGIP-----------EPSEENGCK 273 (929)
Q Consensus 214 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~---------~~~l~~~-----------~~~~~~gs~ 273 (929)
...... ..+..+|+||++..... ++..... .....++..
T Consensus 98 -------------------~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (338)
T 3pfi_A 98 -------------------AAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFT 156 (338)
T ss_dssp -------------------HHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCE
T ss_pred -------------------HHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeE
Confidence 111111 23567888999875311 1111000 000011345
Q ss_pred EEEEeCcccc-----cccCCcceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHH
Q 042574 274 LVITTRSLGV-----SRSMDCKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTV 342 (929)
Q Consensus 274 ilvTtR~~~v-----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 342 (929)
+|.||..... ...+ ...+.+.+++.++...++...+.... ....++....+++.+.|.|-.+..+
T Consensus 157 ~i~atn~~~~l~~~L~~R~-~~~i~l~~~~~~e~~~il~~~~~~~~---~~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 157 LIGATTRAGMLSNPLRDRF-GMQFRLEFYKDSELALILQKAALKLN---KTCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EEEEESCGGGSCHHHHTTC-SEEEECCCCCHHHHHHHHHHHHHHTT---CEECHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEEeCCCccccCHHHHhhc-CEEeeCCCcCHHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHCcCHHHHHHH
Confidence 6666654321 2222 12289999999999999988765432 1223566788889999998555433
No 186
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.93 E-value=0.00031 Score=74.25 Aligned_cols=176 Identities=14% Similarity=0.178 Sum_probs=97.1
Q ss_pred ccccccchHHHHHHHHHHhcC------------CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCC
Q 042574 139 ATLAGKKTKKVVERIWEDLMG------------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 206 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 206 (929)
..++|. +..++.+.+.+.. ...+.|.|+|++|+||||+|+.+++... . ..+.+..+.-.+
T Consensus 21 ~~i~G~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~---~---~~~~i~~~~l~~ 92 (297)
T 3b9p_A 21 TDIAGQ--DVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS---A---TFLNISAASLTS 92 (297)
T ss_dssp GGSCCC--HHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT---C---EEEEEESTTTSS
T ss_pred HHhCCh--HHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC---C---CeEEeeHHHHhh
Confidence 678997 5566666655421 2346899999999999999999998751 1 123344332211
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC---------cc----ccc---cCCCC--C
Q 042574 207 LIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP---------LE----EVG---IPEPS--E 268 (929)
Q Consensus 207 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~---------~~----~l~---~~~~~--~ 268 (929)
.. ..........+.......++.+|+||++..... .. .+. ...+. .
T Consensus 93 --------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 93 --------------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp --------------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred --------------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 11 111222333333333345688999999965311 00 011 01111 1
Q ss_pred CCCcEEEEEeCccc-c----cccCCcceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccH-HHHHH
Q 042574 269 ENGCKLVITTRSLG-V----SRSMDCKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPL-AIVTV 342 (929)
Q Consensus 269 ~~gs~ilvTtR~~~-v----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~ 342 (929)
+.+..||.||.... + ...+. ..+.+...+.++...++...+..... .-..+....+++.+.|.+- ++..+
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R~~-~~i~~~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRRFT-KRVYVSLPDEQTRELLLNRLLQKQGS---PLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHHCC-EEEECCCCCHHHHHHHHHHHHGGGSC---CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhhCC-eEEEeCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 23455666776532 2 12222 12677778888888888776644321 1124456778899988875 44443
No 187
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.93 E-value=5.5e-05 Score=81.29 Aligned_cols=173 Identities=13% Similarity=0.102 Sum_probs=96.3
Q ss_pred ccccccchHHHHHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
.+++|+ +..++.+..++..+. ..++.+.|++|+|||++|+.+++... ..++.++.+.. ....+ +.++..
T Consensus 26 ~~ivg~--~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~------~~~~~i~~~~~-~~~~i-~~~~~~ 95 (324)
T 3u61_B 26 DECILP--AFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN------ADMMFVNGSDC-KIDFV-RGPLTN 95 (324)
T ss_dssp TTSCCC--HHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT------EEEEEEETTTC-CHHHH-HTHHHH
T ss_pred HHHhCc--HHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC------CCEEEEccccc-CHHHH-HHHHHH
Confidence 678998 677788888887765 46778888899999999999988751 22445554332 22222 111111
Q ss_pred hcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC---CccccccCCCCCCCCcEEEEEeCccc-ccccCC--cce
Q 042574 218 LKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF---PLEEVGIPEPSEENGCKLVITTRSLG-VSRSMD--CKE 291 (929)
Q Consensus 218 l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---~~~~l~~~~~~~~~gs~ilvTtR~~~-v~~~~~--~~~ 291 (929)
...... ..+++.++|+||++... ..+.+...+.....+.++|+||.... +..... ...
T Consensus 96 ~~~~~~----------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~ 159 (324)
T 3u61_B 96 FASAAS----------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRV 159 (324)
T ss_dssp HHHBCC----------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEE
T ss_pred HHhhcc----------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcE
Confidence 110000 01368899999997643 22222211111123567777776543 211111 112
Q ss_pred EecccCCHHHHHHHHHh-------hhcccCCCCCcchHHHHHHHHHhcCCccHHH
Q 042574 292 IGVELLSQEEALNLFLD-------KVRISTSQIPNLDKEIINSVVEECDGLPLAI 339 (929)
Q Consensus 292 ~~l~~L~~~~~~~Lf~~-------~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 339 (929)
+.+++++.++-.+++.. .+..... .-...+....+++.++|.+-.+
T Consensus 160 i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~--~~~~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 160 ITFGQPTDEDKIEMMKQMIRRLTEICKHEGI--AIADMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHHHHHHHHTC--CBSCHHHHHHHHHHTCSCTTHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC--CCCcHHHHHHHHHhCCCCHHHH
Confidence 88999998885444322 2222211 1111266777888888876543
No 188
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.92 E-value=0.00026 Score=75.58 Aligned_cols=179 Identities=13% Similarity=0.179 Sum_probs=97.4
Q ss_pred ccccccchHHHHHHHHHHhc------------CCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCC
Q 042574 139 ATLAGKKTKKVVERIWEDLM------------GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 206 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 206 (929)
.+++|. +..++.+.+.+. ....+-|.++|++|+|||+||+.+++... . ...+.+..+.-.+
T Consensus 12 ~di~G~--~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~---~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 12 SDVAGL--EGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--N---STFFSISSSDLVS 84 (322)
T ss_dssp GGSCSC--HHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--S---CEEEEEECCSSCC
T ss_pred HHhcCH--HHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--C---CcEEEEEhHHHHh
Confidence 678886 445555544431 11246899999999999999999998751 1 1223344432211
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC------c-------cccccCC---CCCCC
Q 042574 207 LIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP------L-------EEVGIPE---PSEEN 270 (929)
Q Consensus 207 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~------~-------~~l~~~~---~~~~~ 270 (929)
.... ........+.......++.+|+||+++.... . ..+...+ .....
T Consensus 85 --------------~~~g--~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~ 148 (322)
T 1xwi_A 85 --------------KWLG--ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 148 (322)
T ss_dssp --------------SSCC--SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCT
T ss_pred --------------hhhh--HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCC
Confidence 1111 1122333344444446789999999975310 0 0111111 11133
Q ss_pred CcEEEEEeCccc-ccccC--Ccce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCc-cHHHHHHH
Q 042574 271 GCKLVITTRSLG-VSRSM--DCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGL-PLAIVTVA 343 (929)
Q Consensus 271 gs~ilvTtR~~~-v~~~~--~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~~ 343 (929)
+..||.||.... +...+ .... +.+...+.++..+++...+..... .........|++.+.|. +-.|..+.
T Consensus 149 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~---~l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 149 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN---SLTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp TEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB---CCCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 455665665432 11100 1223 788888999999999887654321 11245567899999887 44454443
No 189
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.90 E-value=3.1e-05 Score=83.19 Aligned_cols=175 Identities=18% Similarity=0.206 Sum_probs=98.0
Q ss_pred cccc-ccchHHHHHHHHHHhcCC--CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHH
Q 042574 139 ATLA-GKKTKKVVERIWEDLMGD--KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIA 215 (929)
Q Consensus 139 ~~~v-Gr~~~~~~~~l~~~l~~~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 215 (929)
..|+ |.........+...+..+ ....+.|+|++|+||||||+.+++..... .+ .++++++ .++...+.
T Consensus 11 ~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~-~~~~i~~------~~~~~~~~ 81 (324)
T 1l8q_A 11 ENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GY-RVIYSSA------DDFAQAMV 81 (324)
T ss_dssp SSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TC-CEEEEEH------HHHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CC-EEEEEEH------HHHHHHHH
Confidence 3454 654344445555555543 35679999999999999999999987332 22 2455543 23333333
Q ss_pred HHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC----ccccccCCCC-CCCCcEEEEEeCcccc-------
Q 042574 216 TALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP----LEEVGIPEPS-EENGCKLVITTRSLGV------- 283 (929)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----~~~l~~~~~~-~~~gs~ilvTtR~~~v------- 283 (929)
..+... . ...+...+ .+..+|++||+..... .+.+...+.. ...|..||+||.+..-
T Consensus 82 ~~~~~~-----~----~~~~~~~~--~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~ 150 (324)
T 1l8q_A 82 EHLKKG-----T----INEFRNMY--KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSD 150 (324)
T ss_dssp HHHHHT-----C----HHHHHHHH--HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCH
T ss_pred HHHHcC-----c----HHHHHHHh--cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhh
Confidence 333211 0 11122222 2467999999975321 1222211110 1245678888864321
Q ss_pred --cccCCcce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHH
Q 042574 284 --SRSMDCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLA 338 (929)
Q Consensus 284 --~~~~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 338 (929)
...+.... +.+++ +.++..+++...+..... .-.++....|++.+ |..-.
T Consensus 151 ~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~---~l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 151 RLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL---ELRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC---CCCHHHHHHHHHHC-SSHHH
T ss_pred HhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHhC-CCHHH
Confidence 11222223 88999 999999999887654322 12245677788888 76543
No 190
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.89 E-value=6.3e-05 Score=80.95 Aligned_cols=169 Identities=10% Similarity=0.134 Sum_probs=98.5
Q ss_pred HHHHHHHHHHhcCCC-eeEEEEEcCCCChHHHHHHHHHHHHhhhcC-------------------CCcEEEEEEEC---C
Q 042574 147 KKVVERIWEDLMGDK-VTKIGVWGMGGIGKTTIMKEINNRLQKETN-------------------KFNVVIWVTVS---Q 203 (929)
Q Consensus 147 ~~~~~~l~~~l~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------~f~~~~wv~~s---~ 203 (929)
++..+.+...+.+++ .+.+.++|+.|+||||+|+.+++....... +++ ..++... .
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCC
Confidence 455677777777766 468999999999999999999988632110 122 2223221 1
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEEEeCcc
Q 042574 204 PLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVITTRSL 281 (929)
Q Consensus 204 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~ 281 (929)
...+..+ +++.+.+.... ..+++-++|+|+++... ..+.+...+.....++.+|++|.+.
T Consensus 87 ~~~i~~i-r~l~~~~~~~~-----------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~ 148 (334)
T 1a5t_A 87 TLGVDAV-REVTEKLNEHA-----------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP 148 (334)
T ss_dssp SBCHHHH-HHHHHHTTSCC-----------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred CCCHHHH-HHHHHHHhhcc-----------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCCh
Confidence 1122211 12222221100 02467889999997632 1222222222223466777776654
Q ss_pred c-ccccC--CcceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHH
Q 042574 282 G-VSRSM--DCKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTV 342 (929)
Q Consensus 282 ~-v~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 342 (929)
+ +.... .+..+.+.++++++..+.+.+.... .++.+..+++.++|.|..+..+
T Consensus 149 ~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~~--------~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 149 ERLLATLRSRCRLHYLAPPPEQYAVTWLSREVTM--------SQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCCC--------CHHHHHHHHHHTTTCHHHHHHT
T ss_pred HhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcCC--------CHHHHHHHHHHcCCCHHHHHHH
Confidence 2 32211 2223899999999999999876511 1345677999999999766543
No 191
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.82 E-value=5.8e-05 Score=81.63 Aligned_cols=179 Identities=12% Similarity=0.180 Sum_probs=99.1
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCc-EEEEEEECCCCCHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFN-VVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
..++|. +..++.+...+..++++-+.++|++|+||||+|+.++..... ..+. .+..+..+...++..+.. ++..
T Consensus 25 ~~~~g~--~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~--~~~~~~~~~~~~~~~~~~~~ir~-~i~~ 99 (340)
T 1sxj_C 25 DEVYGQ--NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG--KNYSNMVLELNASDDRGIDVVRN-QIKD 99 (340)
T ss_dssp GGCCSC--HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT--TSHHHHEEEECTTSCCSHHHHHT-HHHH
T ss_pred HHhcCc--HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC--CCccceEEEEcCcccccHHHHHH-HHHH
Confidence 567887 667778888888777555999999999999999999998631 1111 122233322222222211 1111
Q ss_pred hcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEEEeCccc-ccccC--CcceE
Q 042574 218 LKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVITTRSLG-VSRSM--DCKEI 292 (929)
Q Consensus 218 l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~~-v~~~~--~~~~~ 292 (929)
+..... ...+.+-++|+|+++... ..+.+...+......+++|++|.... +.... .+..+
T Consensus 100 ~~~~~~---------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~ 164 (340)
T 1sxj_C 100 FASTRQ---------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRF 164 (340)
T ss_dssp HHHBCC---------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HHhhcc---------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeE
Confidence 110000 001246789999986431 11112111111123556777665432 21111 12237
Q ss_pred ecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHH
Q 042574 293 GVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIV 340 (929)
Q Consensus 293 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 340 (929)
.+.+++.++..+.+...+..... .-.++..+.+++.++|.+--+.
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~---~i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVLVHEKL---KLSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTC---CBCHHHHHHHHHHHTTCHHHHH
T ss_pred eccCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 89999999998888776533221 1224567788999999876443
No 192
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.81 E-value=0.00026 Score=77.96 Aligned_cols=177 Identities=15% Similarity=0.149 Sum_probs=95.9
Q ss_pred cccccccchHHHHHHHHHHhcC------------CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCC
Q 042574 138 TATLAGKKTKKVVERIWEDLMG------------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 205 (929)
Q Consensus 138 ~~~~vGr~~~~~~~~l~~~l~~------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 205 (929)
...++|. +..++.+.+.+.. ...+-|.|+|++|+|||++|+.+++... . ..+.+.++.-.
T Consensus 114 ~~~iiG~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~---~---~~~~v~~~~l~ 185 (389)
T 3vfd_A 114 FDDIAGQ--DLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN---A---TFFNISAASLT 185 (389)
T ss_dssp GGGSCSC--HHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT---C---EEEEECSCCC-
T ss_pred hHHhCCH--HHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc---C---cEEEeeHHHhh
Confidence 3678998 5666666666521 1246899999999999999999988641 1 23334333221
Q ss_pred CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC--------C-c----cccccCC---C-CC
Q 042574 206 DLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF--------P-L----EEVGIPE---P-SE 268 (929)
Q Consensus 206 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--------~-~----~~l~~~~---~-~~ 268 (929)
+ .. ... .......+........+.+|+||+++... . . ..+...+ . ..
T Consensus 186 ~--~~------------~g~--~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 186 S--KY------------VGE--GEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp ----------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred c--cc------------cch--HHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC
Confidence 1 00 000 11122233333334467899999996431 0 0 0111100 0 01
Q ss_pred CCCcEEEEEeCccc-c----cccCCcceEecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccH-HHHHH
Q 042574 269 ENGCKLVITTRSLG-V----SRSMDCKEIGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPL-AIVTV 342 (929)
Q Consensus 269 ~~gs~ilvTtR~~~-v----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~ 342 (929)
.....||.||.... + ..++. ..+.+...+.++..+++...+..... .-..+....|++.+.|..- ++..+
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~R~~-~~i~i~~p~~~~r~~il~~~~~~~~~---~l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLRRFI-KRVYVSLPNEETRLLLLKNLLCKQGS---PLTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHTTCC-EEEECCCCCHHHHHHHHHHHHTTSCC---CSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCCEEEEEecCCchhcCHHHHcCcc-eEEEcCCcCHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 22345565665422 2 12221 12778889999999999877654322 1224466788888888643 55443
No 193
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.77 E-value=0.00015 Score=81.82 Aligned_cols=148 Identities=14% Similarity=0.173 Sum_probs=81.0
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhc--CC--CcEEEEEEECCCCCHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKET--NK--FNVVIWVTVSQPLDLIKLQTEI 214 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~~--f~~~~wv~~s~~~~~~~~~~~i 214 (929)
..++|| +.++..+.+.+......-+.|+|++|+|||++|+.++....... .. -..++.++++
T Consensus 180 d~iiGr--~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------------ 245 (468)
T 3pxg_A 180 DPVIGR--SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------------ 245 (468)
T ss_dssp CCCCCC--HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCccCc--HHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------------
Confidence 568999 78888899998776666778999999999999999999863211 00 1112223322
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCCccccccCCCCCCCCcEEEEEeCccc------ccccC-
Q 042574 215 ATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFPLEEVGIPEPSEENGCKLVITTRSLG------VSRSM- 287 (929)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~------v~~~~- 287 (929)
...... .......+.......++.+|++| -.......+...+. ....++|.||.... +...+
T Consensus 246 -~~~~g~------~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~ 314 (468)
T 3pxg_A 246 -TKYRGE------FEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALE 314 (468)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred -ccccch------HHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHH
Confidence 000000 01122234444444568899999 11112222322222 22345665555433 11111
Q ss_pred -CcceEecccCCHHHHHHHHHhhhc
Q 042574 288 -DCKEIGVELLSQEEALNLFLDKVR 311 (929)
Q Consensus 288 -~~~~~~l~~L~~~~~~~Lf~~~~~ 311 (929)
....+.++..+.++..+++...+.
T Consensus 315 ~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 315 RRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HhCccceeCCCCHHHHHHHHHHHHH
Confidence 111288999999999999987653
No 194
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.72 E-value=0.00014 Score=78.80 Aligned_cols=177 Identities=18% Similarity=0.193 Sum_probs=95.2
Q ss_pred ccccccchHHHHHHHHHHhc----------C--CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCC
Q 042574 139 ATLAGKKTKKVVERIWEDLM----------G--DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 206 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~----------~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 206 (929)
..++|. +..++.+.+.+. . ...+-|.|+|++|+|||+||+.+++... .. .+.+..+
T Consensus 51 ~di~G~--~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~---~~---~~~v~~~---- 118 (355)
T 2qp9_X 51 EDVAGL--EGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN---ST---FFSVSSS---- 118 (355)
T ss_dssp GGSCCG--GGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT---CE---EEEEEHH----
T ss_pred HHhCCH--HHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC---CC---EEEeeHH----
Confidence 678887 445555555541 1 1234688999999999999999999862 11 2333321
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC-------------ccccccCC---CCCCC
Q 042574 207 LIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP-------------LEEVGIPE---PSEEN 270 (929)
Q Consensus 207 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~~---~~~~~ 270 (929)
++. ...... .......+.......++.+|+||+++.... ...+...+ .....
T Consensus 119 --~l~--------~~~~g~--~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 119 --DLV--------SKWMGE--SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp --HHH--------SCC-----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred --HHh--------hhhcch--HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 111 111111 122233333333345789999999975321 11111111 11123
Q ss_pred CcEEEEEeCccc-ccccC--Ccce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCc-cHHHHHH
Q 042574 271 GCKLVITTRSLG-VSRSM--DCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGL-PLAIVTV 342 (929)
Q Consensus 271 gs~ilvTtR~~~-v~~~~--~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~ 342 (929)
+..||.||.... +...+ .... +.+...+.++..+++...+..... .........|++.+.|. +-.|..+
T Consensus 187 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~---~~~~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS---VLTKEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB---CCCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC---CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 555666665432 11100 1223 778889999999999887654321 11234567788899884 4445443
No 195
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.71 E-value=8.8e-05 Score=90.51 Aligned_cols=155 Identities=14% Similarity=0.221 Sum_probs=84.5
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcC----CCcEEEEEEECCCCCHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETN----KFNVVIWVTVSQPLDLIKLQTEI 214 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----~f~~~~wv~~s~~~~~~~~~~~i 214 (929)
..++|| +.++.++++.+......-+.++|++|+||||+|+.+++....... .-..+++++++.-..
T Consensus 170 d~viGr--~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~-------- 239 (854)
T 1qvr_A 170 DPVIGR--DEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA-------- 239 (854)
T ss_dssp CCCCSC--HHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-------------
T ss_pred cccCCc--HHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc--------
Confidence 568999 788899999987766667899999999999999999998732110 012344444322110
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHHHh-cCcEEEEEecCCCcC---C----cc--ccccCCCCCCCCcEEEEEeCcccc-
Q 042574 215 ATALKQSLPENEDKVRRAGRLSEMLKA-KAKFVLILDDMWEAF---P----LE--EVGIPEPSEENGCKLVITTRSLGV- 283 (929)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~---~----~~--~l~~~~~~~~~gs~ilvTtR~~~v- 283 (929)
+.. ...+.......+...... +++.+|++|++.... . ++ .+..+... ..+..+|.||.....
T Consensus 240 ----g~~--~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~-~~~i~~I~at~~~~~~ 312 (854)
T 1qvr_A 240 ----GAK--YRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA-RGELRLIGATTLDEYR 312 (854)
T ss_dssp ------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH-TTCCCEEEEECHHHHH
T ss_pred ----cCc--cchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh-CCCeEEEEecCchHHh
Confidence 000 011223334444444443 368999999996531 0 11 11111111 123345555543221
Q ss_pred ----cccCCc--ceEecccCCHHHHHHHHHhhh
Q 042574 284 ----SRSMDC--KEIGVELLSQEEALNLFLDKV 310 (929)
Q Consensus 284 ----~~~~~~--~~~~l~~L~~~~~~~Lf~~~~ 310 (929)
...+.. ..+.+++++.++..+++....
T Consensus 313 ~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 313 EIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred hhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 111111 128899999999999997543
No 196
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.69 E-value=4.1e-05 Score=82.97 Aligned_cols=126 Identities=17% Similarity=0.258 Sum_probs=72.1
Q ss_pred CCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcc-cCcccc--cccccceeecccccc-------cccCc--
Q 042574 519 HCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEV-LPSSVS--NLTNLRSLLLRWCRR-------LKRVP-- 586 (929)
Q Consensus 519 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-lp~~i~--~l~~L~~L~l~~~~~-------~~~~~-- 586 (929)
.+|+|+.|.+++|... .++. + .+++|+.|+|..+.+.. ....+. .+++|++|+|+.+.. +..+.
T Consensus 170 ~~P~L~~L~L~g~~~l-~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-SIGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp TCTTCCEEEEECCBTC-BCCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred cCCCCcEEEEeCCCCc-eecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 4566777777665322 2332 1 26677777777666541 112222 567777777642110 11111
Q ss_pred -cccccCCCCEEEccCCCCcc-ccccc---cCCCCCCEEEccCCCCcc-----CCCCccCCCCCccEEEeecC
Q 042574 587 -SVAKLLALQYLDLERTWIEE-VPEGM---EMLENLSHLYLSSPPLKK-----FPTGILPRLRNLYKLKLSFG 649 (929)
Q Consensus 587 -~~~~l~~L~~L~l~~~~i~~-lp~~i---~~l~~L~~L~l~~~~~~~-----~~~~~l~~l~~L~~L~l~~~ 649 (929)
....+++|++|++.+|.+.. .+..+ ..+++|++|+++.|.+.. ++.+ +.++++|+.|+++.|
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~-L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH-VDKIKHLKFINMKYN 317 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTT-HHHHTTCSEEECCSB
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhh-cccCCcceEEECCCC
Confidence 12346788888888887652 22222 257788889888887765 2222 356788888888865
No 197
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.66 E-value=0.00033 Score=78.32 Aligned_cols=178 Identities=14% Similarity=0.177 Sum_probs=95.5
Q ss_pred ccccccchHHHHHHHHHHhc------------CCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCC
Q 042574 139 ATLAGKKTKKVVERIWEDLM------------GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD 206 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~ 206 (929)
..++|. +..++.+.+.+. ....+-|.|+|++|+|||+||+.+++... . ...+.++.+.-
T Consensus 134 ~di~G~--~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~----~-~~~~~v~~~~l-- 204 (444)
T 2zan_A 134 SDVAGL--EGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN----N-STFFSISSSDL-- 204 (444)
T ss_dssp GGSCSC--HHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC----S-SEEEEECCC----
T ss_pred HHhcCH--HHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC----C-CCEEEEeHHHH--
Confidence 678887 555666665542 12246899999999999999999998751 1 11223332211
Q ss_pred HHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC-------------ccccccCCCC---CCC
Q 042574 207 LIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP-------------LEEVGIPEPS---EEN 270 (929)
Q Consensus 207 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~~~~---~~~ 270 (929)
.... .+. . .. ....+.......++.+|+||+++.... ...+...+.. ...
T Consensus 205 ----~~~~---~g~-~--~~----~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 205 ----VSKW---LGE-S--EK----LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp ---------------C--CC----THHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred ----Hhhh---cch-H--HH----HHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 1000 111 0 11 112233333345789999999975310 0112222221 134
Q ss_pred CcEEEEEeCccccc-cc--CCcce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCc-cHHHHHH
Q 042574 271 GCKLVITTRSLGVS-RS--MDCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGL-PLAIVTV 342 (929)
Q Consensus 271 gs~ilvTtR~~~v~-~~--~~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~ 342 (929)
+..||.||...... .. -.... +.+...+.++...+|...+..... .........|++.+.|. +-.|..+
T Consensus 271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~---~l~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN---SLTEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE---ECCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC---CCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 55666677543211 10 01222 778888889999999887644321 11234567788899885 4444443
No 198
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.65 E-value=0.00045 Score=73.06 Aligned_cols=172 Identities=16% Similarity=0.169 Sum_probs=91.6
Q ss_pred ccccccchHHHHHHHHHHhcC-------------CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCC
Q 042574 139 ATLAGKKTKKVVERIWEDLMG-------------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 205 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 205 (929)
..++|. +..++.+.+.+.. ...+.|.|+|++|+|||+||+.+++... .. .+.+.
T Consensus 15 ~di~G~--~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~---~~---~i~v~----- 81 (301)
T 3cf0_A 15 EDIGGL--EDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---AN---FISIK----- 81 (301)
T ss_dssp GGSCSC--HHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CE---EEEEC-----
T ss_pred HHhCCH--HHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC---CC---EEEEE-----
Confidence 568887 4444444444321 3356899999999999999999998751 11 22222
Q ss_pred CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC------------C----ccccccCCC--C
Q 042574 206 DLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF------------P----LEEVGIPEP--S 267 (929)
Q Consensus 206 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~------------~----~~~l~~~~~--~ 267 (929)
..++.... ++.. . .....+........+.+|+||+++... . ...+...+. .
T Consensus 82 -~~~l~~~~---~g~~---~----~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~ 150 (301)
T 3cf0_A 82 -GPELLTMW---FGES---E----ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 150 (301)
T ss_dssp -HHHHHHHH---HTTC---T----THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC
T ss_pred -hHHHHhhh---cCch---H----HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc
Confidence 22222211 1111 1 112223333334568999999996310 0 011111111 1
Q ss_pred CCCCcEEEEEeCccc-cccc-C---Ccce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHH
Q 042574 268 EENGCKLVITTRSLG-VSRS-M---DCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLA 338 (929)
Q Consensus 268 ~~~gs~ilvTtR~~~-v~~~-~---~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 338 (929)
...+..||.||.... +... . .... +.+...+.++-.+++...+..........+ ..+++.+.|.|-+
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 151 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp TTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred CCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 133556777776542 2211 1 1223 888999999989988776644322112222 3456677777644
No 199
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.0012 Score=71.19 Aligned_cols=149 Identities=16% Similarity=0.163 Sum_probs=85.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKA 241 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (929)
.+-|.++|++|+|||.||+++++... .. .+.|..+.-.+ .+ ..+.......+...-..
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e~~---~~---f~~v~~s~l~s--------------k~--vGese~~vr~lF~~Ar~ 239 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHHTD---CK---FIRVSGAELVQ--------------KY--IGEGSRMVRELFVMARE 239 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHHHT---CE---EEEEEGGGGSC--------------SS--TTHHHHHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHhhC---CC---ceEEEhHHhhc--------------cc--cchHHHHHHHHHHHHHH
Confidence 57799999999999999999999862 22 24444332211 11 12233444455555455
Q ss_pred cCcEEEEEecCCCcC----C------------ccccccCCC--CCCCCcEEEEEeCccccc-----ccCCcce-EecccC
Q 042574 242 KAKFVLILDDMWEAF----P------------LEEVGIPEP--SEENGCKLVITTRSLGVS-----RSMDCKE-IGVELL 297 (929)
Q Consensus 242 ~~~~LlvlDdv~~~~----~------------~~~l~~~~~--~~~~gs~ilvTtR~~~v~-----~~~~~~~-~~l~~L 297 (929)
..+++|++|+++.-. . +..+...+. ....+..||.||...+.. +...-.. +.++.-
T Consensus 240 ~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lP 319 (405)
T 4b4t_J 240 HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPP 319 (405)
T ss_dssp TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCC
T ss_pred hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCc
Confidence 679999999997421 0 001111111 123455566677654332 1112222 888888
Q ss_pred CHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCcc
Q 042574 298 SQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLP 336 (929)
Q Consensus 298 ~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 336 (929)
+.++-.++|+.+..........+ ...|++.+.|.-
T Consensus 320 d~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 320 SVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred CHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 99999999987664432211222 345777887754
No 200
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.61 E-value=3.4e-05 Score=83.63 Aligned_cols=134 Identities=18% Similarity=0.107 Sum_probs=84.9
Q ss_pred HHHccCCCCcEEEecCCCCcccCcccccccccceeecccccccccC-ccc--cccCCCCEEEccCC--------CCcccc
Q 042574 540 CFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLRWCRRLKRV-PSV--AKLLALQYLDLERT--------WIEEVP 608 (929)
Q Consensus 540 ~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~-~~~--~~l~~L~~L~l~~~--------~i~~lp 608 (929)
.++..+++|+.|+|+++.-..+|. + .+++|+.|++..|...... ..+ ..+++|++|+|+.+ .+..+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 345788999999999884234554 4 3889999999877532211 133 37899999998632 122222
Q ss_pred ccc--cCCCCCCEEEccCCCCccCCCCc---cCCCCCccEEEeecCCchhcccHH----HHhcccccccEeEEEeccc
Q 042574 609 EGM--EMLENLSHLYLSSPPLKKFPTGI---LPRLRNLYKLKLSFGNEALRETVE----EAARLSDGLDSFEGHFSEL 677 (929)
Q Consensus 609 ~~i--~~l~~L~~L~l~~~~~~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~----~l~~l~~~L~~L~~~~~~l 677 (929)
..+ ..+++|++|++.+|.+....... .+.+++|++|+++.|. ....+.. .+..++ +|+.|+++.+.+
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~-~L~~L~L~~n~i 319 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIK-HLKFINMKYNYL 319 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHT-TCSEEECCSBBC
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCC-cceEEECCCCcC
Confidence 222 35789999999998875311111 1357899999998764 2222222 234456 888888765544
No 201
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.0015 Score=71.65 Aligned_cols=149 Identities=14% Similarity=0.169 Sum_probs=84.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKA 241 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (929)
++-|.++|++|+|||+||+++++... .. .+.+..+.-.+ .+ ..........+......
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~---~~---~~~v~~s~l~s--------------k~--~Gese~~ir~~F~~A~~ 272 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIG---AN---FIFSPASGIVD--------------KY--IGESARIIREMFAYAKE 272 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT---CE---EEEEEGGGTCC--------------SS--SSHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC---CC---EEEEehhhhcc--------------cc--chHHHHHHHHHHHHHHh
Confidence 57899999999999999999999872 12 34444433211 11 11233334444444445
Q ss_pred cCcEEEEEecCCCcCC--------c--------cccccCCC--CCCCCcEEEEEeCccccc-ccC-C---cce-EecccC
Q 042574 242 KAKFVLILDDMWEAFP--------L--------EEVGIPEP--SEENGCKLVITTRSLGVS-RSM-D---CKE-IGVELL 297 (929)
Q Consensus 242 ~~~~LlvlDdv~~~~~--------~--------~~l~~~~~--~~~~gs~ilvTtR~~~v~-~~~-~---~~~-~~l~~L 297 (929)
..+++|++|+++.... . ..+...+. ....+..||.||...+.. ..+ . -.. +.++.-
T Consensus 273 ~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lP 352 (437)
T 4b4t_L 273 HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLP 352 (437)
T ss_dssp SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCC
T ss_pred cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCc
Confidence 6799999999974210 0 01111111 123355677777654322 211 1 222 888888
Q ss_pred CHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCcc
Q 042574 298 SQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLP 336 (929)
Q Consensus 298 ~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 336 (929)
+.++-.++|+.+..........+ ...+++.+.|.-
T Consensus 353 d~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 353 NEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp CHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCC
T ss_pred CHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCC
Confidence 88888889887664432211222 345777887754
No 202
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.54 E-value=2.7e-05 Score=72.49 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=29.4
Q ss_pred cccccchHHHHHHHHHHhc--CCCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 140 TLAGKKTKKVVERIWEDLM--GDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 140 ~~vGr~~~~~~~~l~~~l~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.++|++ ..+.++.+.+. .....-|.|+|.+|+|||++|+.+++..
T Consensus 2 ~iiG~s--~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRS--EWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSS--HHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCC--HHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 467873 44444444432 1222347899999999999999998864
No 203
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.0027 Score=68.65 Aligned_cols=149 Identities=14% Similarity=0.101 Sum_probs=83.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKA 241 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (929)
.+-|.++|++|+|||.||+++++... .. .+.+..++- ...+ ..+.......+......
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~---~~---fi~v~~s~l--------------~sk~--vGesek~ir~lF~~Ar~ 273 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTS---AT---FLRIVGSEL--------------IQKY--LGDGPRLCRQIFKVAGE 273 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHT---CE---EEEEESGGG--------------CCSS--SSHHHHHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHHhC---CC---EEEEEHHHh--------------hhcc--CchHHHHHHHHHHHHHh
Confidence 57899999999999999999999872 22 233433221 1111 12333444455554455
Q ss_pred cCcEEEEEecCCCcCC--------c--------cccccCCC--CCCCCcEEEEEeCccccc-ccC----Ccce-EecccC
Q 042574 242 KAKFVLILDDMWEAFP--------L--------EEVGIPEP--SEENGCKLVITTRSLGVS-RSM----DCKE-IGVELL 297 (929)
Q Consensus 242 ~~~~LlvlDdv~~~~~--------~--------~~l~~~~~--~~~~gs~ilvTtR~~~v~-~~~----~~~~-~~l~~L 297 (929)
..+++|++|+++.... - ..+...+. ....+..||.||...+.. ..+ .-.. +.++.-
T Consensus 274 ~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lP 353 (437)
T 4b4t_I 274 NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENP 353 (437)
T ss_dssp TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCC
T ss_pred cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCc
Confidence 6799999999974210 0 00111111 123345666677654332 211 1222 788888
Q ss_pred CHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCcc
Q 042574 298 SQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLP 336 (929)
Q Consensus 298 ~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 336 (929)
+.++-.++|+.++.........++ ..|++.+.|.-
T Consensus 354 d~~~R~~Il~~~l~~~~l~~dvdl----~~LA~~T~GfS 388 (437)
T 4b4t_I 354 DLSTKKKILGIHTSKMNLSEDVNL----ETLVTTKDDLS 388 (437)
T ss_dssp CHHHHHHHHHHHHTTSCBCSCCCH----HHHHHHCCSCC
T ss_pred CHHHHHHHHHHHhcCCCCCCcCCH----HHHHHhCCCCC
Confidence 888888999876644322112223 45677777653
No 204
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.51 E-value=0.00063 Score=81.96 Aligned_cols=148 Identities=14% Similarity=0.175 Sum_probs=82.1
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCC---CcE-EEEEEECCCCCHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNK---FNV-VIWVTVSQPLDLIKLQTEI 214 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~---f~~-~~wv~~s~~~~~~~~~~~i 214 (929)
..++|| +.+++++.+.+......-+.++|++|+|||++|+.+++........ ..+ ++.++.
T Consensus 180 d~iiG~--~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------- 244 (758)
T 3pxi_A 180 DPVIGR--SKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------- 244 (758)
T ss_dssp CCCCCC--HHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCccCc--hHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------
Confidence 568999 7888999999877666678999999999999999999986221100 011 122222
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCCccccccCCCCCCCCcEEEEEeCcccc------cccC-
Q 042574 215 ATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFPLEEVGIPEPSEENGCKLVITTRSLGV------SRSM- 287 (929)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~ilvTtR~~~v------~~~~- 287 (929)
+..... +.......+.......++.+|++|. .......+...+. ....++|.||..... ...+
T Consensus 245 ----g~~~~G--~~e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~ 314 (758)
T 3pxi_A 245 ----GTKYRG--EFEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALE 314 (758)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEECC----------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred ----cccccc--hHHHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHH
Confidence 000000 1111223344444446788999991 1112222222222 234566666654431 1111
Q ss_pred -CcceEecccCCHHHHHHHHHhhhc
Q 042574 288 -DCKEIGVELLSQEEALNLFLDKVR 311 (929)
Q Consensus 288 -~~~~~~l~~L~~~~~~~Lf~~~~~ 311 (929)
....+.++..+.++..+++.....
T Consensus 315 rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 315 RRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 112288999999999999986543
No 205
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.51 E-value=0.0011 Score=72.64 Aligned_cols=170 Identities=16% Similarity=0.188 Sum_probs=93.6
Q ss_pred ccccccchHHHHHHHHHHh----cC---------CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCC
Q 042574 139 ATLAGKKTKKVVERIWEDL----MG---------DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 205 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l----~~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 205 (929)
.++.|- +..+++|.+.+ .. ...+-|.++|++|+|||+||+++++... .. .+.+..+.-.
T Consensus 181 ~digGl--~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~---~~---f~~v~~s~l~ 252 (434)
T 4b4t_M 181 SDVGGL--DKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN---AT---FLKLAAPQLV 252 (434)
T ss_dssp GGSCSC--HHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT---CE---EEEEEGGGGC
T ss_pred HhcCcH--HHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC---CC---EEEEehhhhh
Confidence 566775 45555555443 22 2367899999999999999999999862 22 2344433211
Q ss_pred CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCc----CC------------ccccccCCC--C
Q 042574 206 DLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEA----FP------------LEEVGIPEP--S 267 (929)
Q Consensus 206 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~----~~------------~~~l~~~~~--~ 267 (929)
..+ ..........+........+++|++|+++.- .. +..+...+. .
T Consensus 253 --------------~~~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 253 --------------QMY--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp --------------SSC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred --------------hcc--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 111 1223334444444444557999999998631 00 001111111 1
Q ss_pred CCCCcEEEEEeCccccc-ccC----Ccce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCcc
Q 042574 268 EENGCKLVITTRSLGVS-RSM----DCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLP 336 (929)
Q Consensus 268 ~~~gs~ilvTtR~~~v~-~~~----~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 336 (929)
...+..||.||...+.. ..+ .-.. +.++.-+.++-.++|+.++.........+ ...|++.+.|.-
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s 387 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN 387 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence 22344566677654332 211 1222 88888899998899887654432211222 345677777653
No 206
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.46 E-value=0.0033 Score=69.28 Aligned_cols=132 Identities=11% Similarity=0.213 Sum_probs=85.0
Q ss_pred CCcCCCCCCCCCC-cccEEEcccCCcCccCcHHHHccCCCCcEEEecCCC---CcccCc-ccccccccceeecccccccc
Q 042574 509 IEEIPSNMSPHCK-ILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTN---IEVLPS-SVSNLTNLRSLLLRWCRRLK 583 (929)
Q Consensus 509 ~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---i~~lp~-~i~~l~~L~~L~l~~~~~~~ 583 (929)
+..++...|.+++ .|+.+.+..+ ++.+....|.++.+|+.+.+..+. ++.+.. .+..+.+|+.+.+.. .+.
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~--~~~ 126 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILD--SVT 126 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGT--TCS
T ss_pred eeEcCHhhccCCCCcCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCC--ccc
Confidence 3456666676664 5888888754 677777778888888888887653 555543 456677777776654 344
Q ss_pred cCc--cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEee
Q 042574 584 RVP--SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLS 647 (929)
Q Consensus 584 ~~~--~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 647 (929)
.++ .+..+.+|+.+.+..+ +..++.. +..+.+|+.+.+..+ +..+....+.+ .+|+.+.+.
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip 190 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIP 190 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEEC
T ss_pred eehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEEC
Confidence 444 4677778888887543 4444433 666777887777543 55555555543 457766664
No 207
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.0031 Score=68.98 Aligned_cols=150 Identities=17% Similarity=0.165 Sum_probs=83.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLK 240 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 240 (929)
..+-|.++|++|+|||+||+++++... .. .+.+..+.-. ..+ ..........+.....
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~---~~---fi~vs~s~L~--------------sk~--vGesek~ir~lF~~Ar 299 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTD---AT---FIRVIGSELV--------------QKY--VGEGARMVRELFEMAR 299 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHT---CE---EEEEEGGGGC--------------CCS--SSHHHHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccC---CC---eEEEEhHHhh--------------ccc--CCHHHHHHHHHHHHHH
Confidence 367899999999999999999999872 22 2444433211 111 1223334444544444
Q ss_pred hcCcEEEEEecCCCcCC----------------ccccccCCC--CCCCCcEEEEEeCccccc-cc---C-Ccce-Eeccc
Q 042574 241 AKAKFVLILDDMWEAFP----------------LEEVGIPEP--SEENGCKLVITTRSLGVS-RS---M-DCKE-IGVEL 296 (929)
Q Consensus 241 ~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~gs~ilvTtR~~~v~-~~---~-~~~~-~~l~~ 296 (929)
...+++|++|+++.... ...+...+. ....+..||.||...+.. .. . .-.. +.++.
T Consensus 300 ~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~l 379 (467)
T 4b4t_H 300 TKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSL 379 (467)
T ss_dssp HTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCC
T ss_pred hcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCC
Confidence 56799999999974210 000111111 122344556666543321 11 1 1223 88888
Q ss_pred CCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCcc
Q 042574 297 LSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLP 336 (929)
Q Consensus 297 L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 336 (929)
-+.++-.++|+.++.........+ ...|++.|.|.-
T Consensus 380 Pd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 380 PDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp CCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred cCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 899999999987764432211222 345777787753
No 208
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.0029 Score=69.23 Aligned_cols=149 Identities=17% Similarity=0.178 Sum_probs=79.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKA 241 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (929)
.+-|.++|++|+|||+||+++++... .. .+.|..++-.+ .+ .......+..+......
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~~~---~~---~~~v~~~~l~~--------------~~--~Ge~e~~ir~lF~~A~~ 263 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANSTK---AA---FIRVNGSEFVH--------------KY--LGEGPRMVRDVFRLARE 263 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHHHT---CE---EEEEEGGGTCC--------------SS--CSHHHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC---CC---eEEEecchhhc--------------cc--cchhHHHHHHHHHHHHH
Confidence 56799999999999999999999872 22 34444433211 11 12233344445444445
Q ss_pred cCcEEEEEecCCCc--------CC--------ccccccCCC--CCCCCcEEEEEeCccccc-----ccCCcce-EecccC
Q 042574 242 KAKFVLILDDMWEA--------FP--------LEEVGIPEP--SEENGCKLVITTRSLGVS-----RSMDCKE-IGVELL 297 (929)
Q Consensus 242 ~~~~LlvlDdv~~~--------~~--------~~~l~~~~~--~~~~gs~ilvTtR~~~v~-----~~~~~~~-~~l~~L 297 (929)
..+.++++|+++.. .. +..+...+. ....+..||.||...+.. +...-.. +.+..+
T Consensus 264 ~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~l 343 (428)
T 4b4t_K 264 NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSL 343 (428)
T ss_dssp TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSS
T ss_pred cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCC
Confidence 67999999998631 00 001111111 123455667777654321 1112222 777656
Q ss_pred -CHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCcc
Q 042574 298 -SQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLP 336 (929)
Q Consensus 298 -~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 336 (929)
+.++-..+|+.+..........+ ...+++.+.|.-
T Consensus 344 Pd~~~R~~Il~~~~~~~~l~~~~d----l~~lA~~t~G~s 379 (428)
T 4b4t_K 344 RDRRERRLIFGTIASKMSLAPEAD----LDSLIIRNDSLS 379 (428)
T ss_dssp CCHHHHHHHHHHHHHSSCBCTTCC----HHHHHHHTTTCC
T ss_pred CCHHHHHHHHHHHhcCCCCCcccC----HHHHHHHCCCCC
Confidence 45555666665553322111222 345677777653
No 209
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.38 E-value=0.0012 Score=79.80 Aligned_cols=155 Identities=19% Similarity=0.247 Sum_probs=90.0
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcC---CCcEEEE-EEECCCCCHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETN---KFNVVIW-VTVSQPLDLIKLQTEI 214 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---~f~~~~w-v~~s~~~~~~~~~~~i 214 (929)
..++|| +.++.++.+.+......-+.|+|++|+||||+|+.+++......- .....+| +..+.-
T Consensus 186 d~~iGr--~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l---------- 253 (758)
T 1r6b_X 186 DPLIGR--EKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL---------- 253 (758)
T ss_dssp CCCCSC--HHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCccCC--HHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH----------
Confidence 568998 778889999998776677899999999999999999988632110 1122222 211110
Q ss_pred HHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcC--------Cc--cccccCCCCCCCCcEEEEEeCccccc
Q 042574 215 ATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF--------PL--EEVGIPEPSEENGCKLVITTRSLGVS 284 (929)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--------~~--~~l~~~~~~~~~gs~ilvTtR~~~v~ 284 (929)
+.. .............+...+...++.+|++||+.... .. ..+..++.. ..+..+|.+|...+..
T Consensus 254 ---~~~-~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~~ 328 (758)
T 1r6b_X 254 ---LAG-TKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFS 328 (758)
T ss_dssp ----CC-CCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHHH
T ss_pred ---hcc-ccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHHh
Confidence 000 01112334444455555544467999999997531 11 112222222 2345666666543321
Q ss_pred ------ccCCcc--eEecccCCHHHHHHHHHhhh
Q 042574 285 ------RSMDCK--EIGVELLSQEEALNLFLDKV 310 (929)
Q Consensus 285 ------~~~~~~--~~~l~~L~~~~~~~Lf~~~~ 310 (929)
..+... .+.++..+.++..+++....
T Consensus 329 ~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 329 NIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 111111 28899999999999887654
No 210
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.37 E-value=0.00012 Score=71.30 Aligned_cols=62 Identities=23% Similarity=0.312 Sum_probs=32.9
Q ss_pred cccCCCCEEEccCCCCcc-----ccccccCCCCCCEEEc--cCCCCccCC----CCccCCCCCccEEEeecCC
Q 042574 589 AKLLALQYLDLERTWIEE-----VPEGMEMLENLSHLYL--SSPPLKKFP----TGILPRLRNLYKLKLSFGN 650 (929)
Q Consensus 589 ~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l--~~~~~~~~~----~~~l~~l~~L~~L~l~~~~ 650 (929)
...++|++|+|++|.|.. +...+...++|++|++ ++|.+.... ...+...++|++|++++|.
T Consensus 90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 334556666666665552 3344555566666666 555554311 1123445667777776554
No 211
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.37 E-value=0.00095 Score=71.67 Aligned_cols=48 Identities=6% Similarity=0.248 Sum_probs=35.7
Q ss_pred EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHH
Q 042574 292 IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTV 342 (929)
Q Consensus 292 ~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 342 (929)
..+++.+.++-.+++.+.+..... ....+.+..|++.+.|.|-.+..+
T Consensus 175 ~~Ld~~~~~~l~~iL~~~~~~~~~---~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 175 LELDFYTVKELKEIIKRAASLMDV---EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EECCCCCHHHHHHHHHHHHHHTTC---CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred eeCCCCCHHHHHHHHHHHHHHcCC---CcCHHHHHHHHHhcCCChHHHHHH
Confidence 789999999999999887643221 223567888999999999655433
No 212
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.33 E-value=5.9e-05 Score=73.45 Aligned_cols=109 Identities=12% Similarity=0.012 Sum_probs=75.1
Q ss_pred CCCCcccEEEcccC-CcCcc-----CcHHHHccCCCCcEEEecCCCCcc-----cCcccccccccceeeccccccccc--
Q 042574 518 PHCKILSTLLLQRN-GYLQR-----IPECFFMHMRGLKVLNLSHTNIEV-----LPSSVSNLTNLRSLLLRWCRRLKR-- 584 (929)
Q Consensus 518 ~~~~~L~~L~l~~~-~~~~~-----~~~~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~~~-- 584 (929)
...+.|++|++++| . +.. +... +...++|++|+|++|.+.. +...+...++|++|+|++|..-..
T Consensus 33 ~~~~~L~~L~L~~n~~-i~~~g~~~l~~~-L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMN-IPVPTLKACAEA-LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp TTCTTCCEEECTTCTT-CCHHHHHHHHHH-HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred hcCCCCCEEEecCCCC-CCHHHHHHHHHH-HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 35778899999888 5 332 2222 3567889999999988762 344556667889999988743221
Q ss_pred --Cc-cccccCCCCEEEc--cCCCCcc-----ccccccCCCCCCEEEccCCCCc
Q 042574 585 --VP-SVAKLLALQYLDL--ERTWIEE-----VPEGMEMLENLSHLYLSSPPLK 628 (929)
Q Consensus 585 --~~-~~~~l~~L~~L~l--~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~~ 628 (929)
+. .+...++|++|++ ++|.|.. +...+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 22 4667788999999 7787763 4445566688999998888653
No 213
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.29 E-value=0.0077 Score=61.84 Aligned_cols=176 Identities=16% Similarity=0.141 Sum_probs=87.3
Q ss_pred ccccccch-HHHHHHHHHHhcCC---------CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHH
Q 042574 139 ATLAGKKT-KKVVERIWEDLMGD---------KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLI 208 (929)
Q Consensus 139 ~~~vGr~~-~~~~~~l~~~l~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 208 (929)
.+++|.+. .+.+.+++..+... ..+-|.|+|++|+||||+|+.+++... ..| +.+..+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~---~~~---~~i~~~~~~~-- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK---VPF---FTISGSDFVE-- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT---CCE---EEECSCSSTT--
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC---CCE---EEEeHHHHHH--
Confidence 67888732 22333444444321 134588999999999999999998762 222 3333222110
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC-----c-----------cccccCCC--CCCC
Q 042574 209 KLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP-----L-----------EEVGIPEP--SEEN 270 (929)
Q Consensus 209 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-----~-----------~~l~~~~~--~~~~ 270 (929)
..... . ......+.+......+.++++|+++.... + ..+...+. ....
T Consensus 84 ------------~~~~~-~-~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 84 ------------MFVGV-G-ASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp ------------SCCCC-C-HHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred ------------Hhhhh-h-HHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 00011 1 12223333333345678999999853110 0 00110010 1133
Q ss_pred CcEEEEEeCccc-ccccC----Ccce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCC-ccHHHH
Q 042574 271 GCKLVITTRSLG-VSRSM----DCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDG-LPLAIV 340 (929)
Q Consensus 271 gs~ilvTtR~~~-v~~~~----~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plai~ 340 (929)
+..||.||...+ +.... .... +.+...+.++-.+++...+......... ....++..+.| .+--+.
T Consensus 150 ~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~----~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 150 GIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI----DAAIIARGTPGFSGADLA 222 (257)
T ss_dssp CEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC----CHHHHHHTCTTCCHHHHH
T ss_pred CEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc----cHHHHHHHcCCCCHHHHH
Confidence 456676776543 22111 1122 6777788888888887665332111111 12346667777 554443
No 214
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.28 E-value=0.003 Score=71.04 Aligned_cols=174 Identities=13% Similarity=0.170 Sum_probs=92.6
Q ss_pred ccccccchHHHHHHHHHHhc-------------CCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCC
Q 042574 139 ATLAGKKTKKVVERIWEDLM-------------GDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 205 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 205 (929)
..++|. +..++++.+.+. ....+-|.|+|++|+|||++|+.+++.. .. ..+.++++
T Consensus 204 ~~i~G~--~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~---~fv~vn~~--- 272 (489)
T 3hu3_A 204 DDIGGC--RKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GA---FFFLINGP--- 272 (489)
T ss_dssp GGCCSC--HHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SS---EEEEEEHH---
T ss_pred HHcCCH--HHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CC---CEEEEEch---
Confidence 457887 455555555543 2334679999999999999999998864 11 22334321
Q ss_pred CHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC-------------ccccccCCC--CCCC
Q 042574 206 DLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP-------------LEEVGIPEP--SEEN 270 (929)
Q Consensus 206 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~~~--~~~~ 270 (929)
+ +. .... .........+......+++.+|+||+++.... ...+...+. ....
T Consensus 273 ---~----l~----~~~~--g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~ 339 (489)
T 3hu3_A 273 ---E----IM----SKLA--GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (489)
T ss_dssp ---H----HH----TSCT--THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred ---H----hh----hhhc--chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCC
Confidence 1 11 1111 11222223333333456788999999942100 011111111 1123
Q ss_pred CcEEEEEeCccc-ccccC----Ccce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCc-cHHHH
Q 042574 271 GCKLVITTRSLG-VSRSM----DCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGL-PLAIV 340 (929)
Q Consensus 271 gs~ilvTtR~~~-v~~~~----~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~ 340 (929)
+..||.||.... +...+ .... +.+...+.++-.+++...+.......... ..++++.+.|. +-.+.
T Consensus 340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~ 412 (489)
T 3hu3_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLA 412 (489)
T ss_dssp CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTCCHHHHH
T ss_pred ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCCcHHHHH
Confidence 456666666542 22211 2223 88899999999999988765432211222 24466677664 43443
No 215
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.28 E-value=0.0021 Score=71.65 Aligned_cols=172 Identities=15% Similarity=0.149 Sum_probs=91.5
Q ss_pred ccccccch-HHHHHHHHHHhcCC---------CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHH
Q 042574 139 ATLAGKKT-KKVVERIWEDLMGD---------KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLI 208 (929)
Q Consensus 139 ~~~vGr~~-~~~~~~l~~~l~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~ 208 (929)
.+++|.+. .+.+.+++..+... -.+-|.|+|++|+||||||+.+++... ..| +.++.++-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~---~~f---~~is~~~~~~~- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN---VPF---FHISGSDFVEL- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT---CCE---EEEEGGGTTTC-
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC---CCe---eeCCHHHHHHH-
Confidence 57888732 22344445544331 134588999999999999999999762 222 33443322110
Q ss_pred HHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCcCC----------------ccccccCCC--CCCC
Q 042574 209 KLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEAFP----------------LEEVGIPEP--SEEN 270 (929)
Q Consensus 209 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~ 270 (929)
. ..........+........+.+|+||+++.... +..+...+. ....
T Consensus 89 -------------~--~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 89 -------------F--VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp -------------C--TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred -------------H--hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 0 011122333344444446789999999965211 111111111 1123
Q ss_pred CcEEEEEeCcccccc-c-C---Ccce-EecccCCHHHHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCcc
Q 042574 271 GCKLVITTRSLGVSR-S-M---DCKE-IGVELLSQEEALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLP 336 (929)
Q Consensus 271 gs~ilvTtR~~~v~~-~-~---~~~~-~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 336 (929)
+..||.||...+... . . .-.. +.++..+.++-.++++.++.......... ...+++.+.|..
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 556777776654321 1 1 1122 77888888888888876654322111111 344777888876
No 216
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.27 E-value=0.00042 Score=67.03 Aligned_cols=115 Identities=14% Similarity=0.121 Sum_probs=62.6
Q ss_pred HHHHHHHHHHhcC---CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCC
Q 042574 147 KKVVERIWEDLMG---DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLP 223 (929)
Q Consensus 147 ~~~~~~l~~~l~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~ 223 (929)
...++.+.+++.+ .....+.|+|++|+||||||+.+++...... .+. +++++ ..++...+.........
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~-g~~-~~~~~------~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK-GIR-GYFFD------TKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHS-CCC-CCEEE------HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHc-CCe-EEEEE------HHHHHHHHHHHhcCchH
Confidence 3444555555443 3357899999999999999999999873222 221 33333 44444444444332111
Q ss_pred CCccHHHHHHHHHHHHHhcCcEEEEEecCCCc--CCcc--ccccCCCC-CCCCcEEEEEeCc
Q 042574 224 ENEDKVRRAGRLSEMLKAKAKFVLILDDMWEA--FPLE--EVGIPEPS-EENGCKLVITTRS 280 (929)
Q Consensus 224 ~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~--~l~~~~~~-~~~gs~ilvTtR~ 280 (929)
. .+...+ .+.-+|||||++.. ..+. .+...+.. ...|..||+||..
T Consensus 92 ---~------~~~~~~--~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 92 ---T------KFLKTV--LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp ---S------HHHHHH--HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred ---H------HHHHHh--cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1 122233 24678999999732 2221 11111110 1246788888865
No 217
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.26 E-value=0.00053 Score=72.20 Aligned_cols=145 Identities=13% Similarity=0.065 Sum_probs=84.3
Q ss_pred HHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhc-CCCcEEEEEEECC-CCCHHHHHHHHHHHhcCCCCC
Q 042574 147 KKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKET-NKFNVVIWVTVSQ-PLDLIKLQTEIATALKQSLPE 224 (929)
Q Consensus 147 ~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~ 224 (929)
+..++.+...+.+++.+...++|++|+||||+|+.+++....-. .+.+ ..++..+. ..++..+ +++.+.+....
T Consensus 3 ~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p-- 78 (305)
T 2gno_A 3 KDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP-- 78 (305)
T ss_dssp -CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC--
T ss_pred HHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhcc--
Confidence 34566777777777778999999999999999999987531111 2333 34444432 2333333 23444332211
Q ss_pred CccHHHHHHHHHHHHHhcCcEEEEEecCCCcC--CccccccCCCCCCCCcEEEEEeCcc-cccccCCcceEecccCCHHH
Q 042574 225 NEDKVRRAGRLSEMLKAKAKFVLILDDMWEAF--PLEEVGIPEPSEENGCKLVITTRSL-GVSRSMDCKEIGVELLSQEE 301 (929)
Q Consensus 225 ~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ilvTtR~~-~v~~~~~~~~~~l~~L~~~~ 301 (929)
..+++-++|+|+++... ..+.+...+......+.+|++|.+. .+........+++.++++++
T Consensus 79 ---------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR~~~f~~l~~~~ 143 (305)
T 2gno_A 79 ---------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKE 143 (305)
T ss_dssp ---------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCHH
T ss_pred ---------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHceeEeCCCCCHHH
Confidence 02457789999997532 2222222222223466777766543 23221111148899999999
Q ss_pred HHHHHHhhh
Q 042574 302 ALNLFLDKV 310 (929)
Q Consensus 302 ~~~Lf~~~~ 310 (929)
..+.+.+.+
T Consensus 144 i~~~L~~~~ 152 (305)
T 2gno_A 144 FRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999987765
No 218
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.22 E-value=0.00022 Score=73.05 Aligned_cols=78 Identities=27% Similarity=0.210 Sum_probs=44.1
Q ss_pred ccCCCCcEEEecCCCCccc---CcccccccccceeecccccccccCccccccC--CCCEEEccCCCCcc-cc-------c
Q 042574 543 MHMRGLKVLNLSHTNIEVL---PSSVSNLTNLRSLLLRWCRRLKRVPSVAKLL--ALQYLDLERTWIEE-VP-------E 609 (929)
Q Consensus 543 ~~l~~L~~L~l~~~~i~~l---p~~i~~l~~L~~L~l~~~~~~~~~~~~~~l~--~L~~L~l~~~~i~~-lp-------~ 609 (929)
.++++|+.|+|++|.++.+ |..+..+++|++|+|++|. +..+..+..+. +|++|+|.+|.+.. +| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4567777777777776643 3444566677777776653 33333333333 66666666665542 22 1
Q ss_pred cccCCCCCCEEE
Q 042574 610 GMEMLENLSHLY 621 (929)
Q Consensus 610 ~i~~l~~L~~L~ 621 (929)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 244566666664
No 219
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.21 E-value=0.00031 Score=74.78 Aligned_cols=45 Identities=18% Similarity=0.371 Sum_probs=32.5
Q ss_pred cccccchHHHHHHHHHHhcCC---------CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 140 TLAGKKTKKVVERIWEDLMGD---------KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 140 ~~vGr~~~~~~~~l~~~l~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.++|+ +..++.+...+... ....+.|+|++|+||||+|+.+++..
T Consensus 18 ~i~G~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 18 RVVGQ--DEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TCCSC--HHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred hcCCH--HHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 46676 44555555444321 13589999999999999999999976
No 220
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.21 E-value=0.014 Score=64.14 Aligned_cols=144 Identities=17% Similarity=0.232 Sum_probs=105.6
Q ss_pred cccEEEcccCCCCcCCCCCCCCCCcccEEEcccCC--cCccCcHHHHccCCCCcEEEecCCCCcccCc-cccccccccee
Q 042574 498 NLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNG--YLQRIPECFFMHMRGLKVLNLSHTNIEVLPS-SVSNLTNLRSL 574 (929)
Q Consensus 498 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L 574 (929)
.++.+.+..+ +..+....|.+|.+|+.+.+..+. .+..+....|.++..|+.+.+..+ ++.++. .+..+.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 4788887644 788888899999999999998762 367788888888999998877654 555543 46788999999
Q ss_pred ecccccccccCc--cccccCCCCEEEccCCCCccccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEee
Q 042574 575 LLRWCRRLKRVP--SVAKLLALQYLDLERTWIEEVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLS 647 (929)
Q Consensus 575 ~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 647 (929)
.+.. .+..++ .+..+.+|+.+.+..+ +..+........+|+.+.+..+ +..+....+..+.+|......
T Consensus 143 ~lp~--~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~ 213 (394)
T 4gt6_A 143 TIPE--GVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK-VTRIGTNAFSECFALSTITSD 213 (394)
T ss_dssp ECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT-CCEECTTTTTTCTTCCEEEEC
T ss_pred cccc--eeeeecccceecccccccccccce-eeEeccccccccceeEEEECCc-ccccccchhhhccccceeccc
Confidence 9975 344454 5788899999998764 5555554334467888888653 445555667888888877655
No 221
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.20 E-value=0.00069 Score=66.87 Aligned_cols=122 Identities=20% Similarity=0.137 Sum_probs=63.5
Q ss_pred ccccccch--HHHHHHHHHHhcCC----CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHH
Q 042574 139 ATLAGKKT--KKVVERIWEDLMGD----KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQT 212 (929)
Q Consensus 139 ~~~vGr~~--~~~~~~l~~~l~~~----~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 212 (929)
..+++.+. ...++.+..++... ....+.|+|++|+||||||+.+++.... ....++|++++ ++..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~---~~~~~~~~~~~------~~~~ 95 (202)
T 2w58_A 25 SDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAK---RNVSSLIVYVP------ELFR 95 (202)
T ss_dssp TSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHT---TTCCEEEEEHH------HHHH
T ss_pred hhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEEhH------HHHH
Confidence 34555321 23445555555432 1278999999999999999999998732 22345666543 3333
Q ss_pred HHHHHhcCCCCCCccHHHHHHHHHHHHHhcCcEEEEEecCCCc--CCcc--cccc-CCCC-CCCCcEEEEEeCc
Q 042574 213 EIATALKQSLPENEDKVRRAGRLSEMLKAKAKFVLILDDMWEA--FPLE--EVGI-PEPS-EENGCKLVITTRS 280 (929)
Q Consensus 213 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~--~l~~-~~~~-~~~gs~ilvTtR~ 280 (929)
.+...... .. . ..+...+.. .-+|||||++.. ..|. .+.. .+.. ...+.++|+||..
T Consensus 96 ~~~~~~~~----~~-~----~~~~~~~~~--~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 96 ELKHSLQD----QT-M----NEKLDYIKK--VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp HHHHC-------CC-C----HHHHHHHHH--SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHhcc----ch-H----HHHHHHhcC--CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 33332211 11 1 112233322 238999999652 2322 1221 1111 1235578888874
No 222
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.16 E-value=0.00092 Score=71.03 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=34.3
Q ss_pred ccccccchHHHHHHHHHHhcC--------------CCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMG--------------DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~--------------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..++|+ +..++.+...+.. ....-+.|+|++|+|||++|+.+++..
T Consensus 15 ~~i~G~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQ--ADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSC--HHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCCh--HHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457887 5556666655532 224568899999999999999999876
No 223
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.15 E-value=0.00034 Score=72.69 Aligned_cols=48 Identities=25% Similarity=0.257 Sum_probs=32.7
Q ss_pred ccccccch-HHHHHHHHHHhcC---------CCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKT-KKVVERIWEDLMG---------DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~-~~~~~~l~~~l~~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..++|.+. .+.+.+++..+.. ...+-|.|+|++|+|||++|+.+++..
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 56888743 3334444444332 113447899999999999999999976
No 224
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.10 E-value=0.00053 Score=70.26 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=29.7
Q ss_pred ccCCCCcEEEecCCCCcccCccccccc--ccceeecccccccccCc--------cccccCCCCEEE
Q 042574 543 MHMRGLKVLNLSHTNIEVLPSSVSNLT--NLRSLLLRWCRRLKRVP--------SVAKLLALQYLD 598 (929)
Q Consensus 543 ~~l~~L~~L~l~~~~i~~lp~~i~~l~--~L~~L~l~~~~~~~~~~--------~~~~l~~L~~L~ 598 (929)
..+++|++|+|++|.++.+ ..+..+. +|++|+|++|......| .+..+++|+.||
T Consensus 193 ~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 193 QKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 4566666666666665544 2233333 66666666665443332 145566666665
No 225
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.81 E-value=0.00043 Score=73.15 Aligned_cols=45 Identities=11% Similarity=0.278 Sum_probs=30.1
Q ss_pred cccccchHHHHHHHHHHhcC--CCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 140 TLAGKKTKKVVERIWEDLMG--DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 140 ~~vGr~~~~~~~~l~~~l~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.++|++ ..+.++.+.+.. ....-|.|+|.+|+|||++|+.+.+..
T Consensus 3 ~iig~s--~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSS--PAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCS--HHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECC--HHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 467773 333444433321 223457899999999999999998864
No 226
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.79 E-value=0.0005 Score=71.27 Aligned_cols=46 Identities=17% Similarity=0.216 Sum_probs=28.1
Q ss_pred ccccccchHHHHHHHHHHhc--CCCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLM--GDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..++|++ ..+.++.+.+. .....-|.|+|.+|+|||++|+.+++..
T Consensus 6 ~~~ig~~--~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 6 DNLLGEA--NSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ----CCC--HHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred ccceeCC--HHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3567873 33333333321 1122467899999999999999998875
No 227
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.73 E-value=0.00063 Score=81.97 Aligned_cols=60 Identities=17% Similarity=0.309 Sum_probs=39.1
Q ss_pred ccccccchHHHHHHHHHHhcC-------CC--eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECC
Q 042574 139 ATLAGKKTKKVVERIWEDLMG-------DK--VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 203 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~-------~~--~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 203 (929)
..++|. +..++.+...+.. .. ...+.++|++|+|||++|+.+++... ..-...+.++++.
T Consensus 491 ~~viGq--~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i~~s~ 559 (758)
T 3pxi_A 491 SRVIGQ--DEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF---GDEESMIRIDMSE 559 (758)
T ss_dssp TTSCSC--HHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEEEGGG
T ss_pred CcCcCh--HHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEEechh
Confidence 568887 5555555555431 11 23799999999999999999999862 2222345555543
No 228
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.66 E-value=0.0055 Score=61.13 Aligned_cols=44 Identities=23% Similarity=0.162 Sum_probs=33.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQ 211 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 211 (929)
..++.|+|++|+||||||..++. . . -..++|++.....+...+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~-~-~----~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL-L-S----GKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH-H-H----CSEEEEEESSCCCCHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH-H-c----CCcEEEEECCCCCCHHHHH
Confidence 46899999999999999999987 2 1 2357888876655655444
No 229
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.63 E-value=0.0057 Score=67.34 Aligned_cols=142 Identities=20% Similarity=0.256 Sum_probs=95.2
Q ss_pred cccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCcccccccccceeecc
Q 042574 498 NLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPSSVSNLTNLRSLLLR 577 (929)
Q Consensus 498 ~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~ 577 (929)
+++.+.+.. .+..+....+..+..++.+.+..+ ...+....|..+..++.+.+..+.+. ...+..+.+|+.+.+.
T Consensus 231 ~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 231 GVKNIIIPD-SFTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLL 305 (394)
T ss_dssp CCCEEEECT-TCCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEEC
T ss_pred CCceEEECC-CceecccccccccccceeEEcCCC--cceeeccccccccccceeccCceeec--cccccccccccccccc
Confidence 455555543 244555566667777877777665 33455555667777777776654322 1235667788888876
Q ss_pred cccccccCc--cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeec
Q 042574 578 WCRRLKRVP--SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSF 648 (929)
Q Consensus 578 ~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 648 (929)
. .++.++ .+.++.+|+.+++..+ ++.++.. +.++++|+.+.+..+ ++.+....|.++++|+.+.+..
T Consensus 306 ~--~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 306 D--SVKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp T--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred c--ccceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 4 355555 5778888888888643 6666554 778888888888655 7778788888888888888763
No 230
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.54 E-value=0.0098 Score=70.35 Aligned_cols=149 Identities=12% Similarity=0.141 Sum_probs=82.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKA 241 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (929)
++-|.++|++|+|||+||++++++.. .+ .+.|+.++ + ...+ ..........+...-..
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg---~~---~~~v~~~~----------l----~sk~--~gese~~lr~lF~~A~~ 295 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETG---AF---FFLINGPE----------I----MSKL--AGESESNLRKAFEEAEK 295 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTT---CE---EEEEEHHH----------H----HSSC--TTHHHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC---Ce---EEEEEhHH----------h----hccc--chHHHHHHHHHHHHHHH
Confidence 57899999999999999999998762 11 34443221 1 1111 12233444445444445
Q ss_pred cCcEEEEEecCCCcC--------Cc-----cccccCCC--CCCCCcEEEEEeCcc-cccccCC----cce-EecccCCHH
Q 042574 242 KAKFVLILDDMWEAF--------PL-----EEVGIPEP--SEENGCKLVITTRSL-GVSRSMD----CKE-IGVELLSQE 300 (929)
Q Consensus 242 ~~~~LlvlDdv~~~~--------~~-----~~l~~~~~--~~~~gs~ilvTtR~~-~v~~~~~----~~~-~~l~~L~~~ 300 (929)
..+.+|+||+++.-. .. ..+...+. ....+..||.||... .+-..+. -.. +.+...+.+
T Consensus 296 ~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~ 375 (806)
T 3cf2_A 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT 375 (806)
T ss_dssp SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHH
T ss_pred cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHH
Confidence 679999999996421 00 01111110 012233455555443 3322221 122 888889999
Q ss_pred HHHHHHHhhhcccCCCCCcchHHHHHHHHHhcCCcc
Q 042574 301 EALNLFLDKVRISTSQIPNLDKEIINSVVEECDGLP 336 (929)
Q Consensus 301 ~~~~Lf~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 336 (929)
+-.++|+.+..........+ ...|++++.|.-
T Consensus 376 ~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 376 GRLEILQIHTKNMKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp HHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCC
T ss_pred HHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCC
Confidence 99999987654332211222 345777887764
No 231
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.51 E-value=0.0019 Score=67.22 Aligned_cols=69 Identities=22% Similarity=0.304 Sum_probs=42.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEE--CCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV--SQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEML 239 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 239 (929)
.+++.|+|++|+||||||.+++... .. .+.|+++ .+..+. . ..+.......+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-G~-----~VlyIs~~~eE~v~~--------------~--~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-GG-----KDKYATVRFGEPLSG--------------Y--NTDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-HT-----TSCCEEEEBSCSSTT--------------C--BCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-CC-----CEEEEEecchhhhhh--------------h--hcCHHHHHHHHHHHH
Confidence 3578899999999999999998762 11 2456666 222110 0 023333444455555
Q ss_pred HhcCcEEEEEecCCC
Q 042574 240 KAKAKFVLILDDMWE 254 (929)
Q Consensus 240 ~~~~~~LlvlDdv~~ 254 (929)
.+ .+ +||+|++..
T Consensus 181 ~~-~~-LLVIDsI~a 193 (331)
T 2vhj_A 181 LQ-HR-VIVIDSLKN 193 (331)
T ss_dssp HH-CS-EEEEECCTT
T ss_pred hh-CC-EEEEecccc
Confidence 43 45 999999854
No 232
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.42 E-value=0.004 Score=57.79 Aligned_cols=40 Identities=18% Similarity=0.301 Sum_probs=29.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECC
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 203 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 203 (929)
....++|+|+.|+|||||++.++..... ..+ .++++...+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE--AGK-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT--TTC-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh--cCC-cEEEEcHHH
Confidence 4568999999999999999999998732 222 256665443
No 233
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.39 E-value=0.013 Score=59.46 Aligned_cols=92 Identities=15% Similarity=0.083 Sum_probs=53.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhc---CCCcEEEEEEECCCCCHHHHHHHHHHHhcCCC---------CCCccHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLDLIKLQTEIATALKQSL---------PENEDKV 229 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~---------~~~~~~~ 229 (929)
..++.|+|++|+||||||+.++....... ..-..++|++....++...+. .++..++... ....+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 46999999999999999999988531110 013568888877655554432 3344443221 0011111
Q ss_pred ---HHHHHHHHHHHhcCcEEEEEecCCC
Q 042574 230 ---RRAGRLSEMLKAKAKFVLILDDMWE 254 (929)
Q Consensus 230 ---~~~~~l~~~l~~~~~~LlvlDdv~~ 254 (929)
.....+...+...+.-++|+|++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 1222344444445678899999854
No 234
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.35 E-value=0.01 Score=61.36 Aligned_cols=86 Identities=8% Similarity=-0.001 Sum_probs=56.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCC-----CccHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPE-----NEDKVRRAGRLSEM 238 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~~ 238 (929)
++-|.|++|+||||||.+++..... ...-..++|++....++.. .+++++.+... ..+.++....+.+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 7899999999999999998887632 2123468999887777754 26666654321 12233321223333
Q ss_pred H---HhcCcEEEEEecCCCc
Q 042574 239 L---KAKAKFVLILDDMWEA 255 (929)
Q Consensus 239 l---~~~~~~LlvlDdv~~~ 255 (929)
+ .+++.-++|+|-|...
T Consensus 104 l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTC
T ss_pred HHHhhccCceEEEEeccccc
Confidence 3 4567889999998643
No 235
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.24 E-value=0.012 Score=64.28 Aligned_cols=130 Identities=16% Similarity=0.201 Sum_probs=93.7
Q ss_pred CCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccC-cccccccccceeecccccccccCc--cc
Q 042574 512 IPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLP-SSVSNLTNLRSLLLRWCRRLKRVP--SV 588 (929)
Q Consensus 512 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~~~~~~--~~ 588 (929)
+....+..+.+|+.+.+..+ +..+....|.++..|+.+.+..+ ++.+. ..+.++.+|+.+.+.. .+..++ .+
T Consensus 208 i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF 282 (379)
T 4h09_A 208 VTAYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLC 282 (379)
T ss_dssp ECTTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTT
T ss_pred Eeecccccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceecccccc
Confidence 33445556778888877654 55566666678888888888765 55554 3456777888888764 355555 47
Q ss_pred cccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEee
Q 042574 589 AKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLS 647 (929)
Q Consensus 589 ~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 647 (929)
..+.+|+.+.+.++.++.++.. +.++.+|+.+.+.. .++.+....|.++++|+.+.+.
T Consensus 283 ~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhCCCCCCEEEEC
Confidence 7888888888888888877665 77888898888864 3777777778888888877664
No 236
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.23 E-value=0.004 Score=65.34 Aligned_cols=25 Identities=24% Similarity=0.517 Sum_probs=23.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
++.+.++|++|+|||+||+.+++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999999987
No 237
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.22 E-value=0.013 Score=62.61 Aligned_cols=85 Identities=18% Similarity=0.241 Sum_probs=53.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLP-----ENEDKVRRAGRLS 236 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 236 (929)
.+++.|+|++|+||||||.+++...... -..++|++....++.. .++.++.... ...+.......+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~---gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKM---GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 4699999999999999999999876321 2347888877666644 4455554321 1122233333333
Q ss_pred HHHHhcCcEEEEEecCCC
Q 042574 237 EMLKAKAKFVLILDDMWE 254 (929)
Q Consensus 237 ~~l~~~~~~LlvlDdv~~ 254 (929)
..+...+.-++|+|.+..
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 233335566889999854
No 238
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.20 E-value=0.024 Score=64.91 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...++.++|++|+||||||+.++...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999999876
No 239
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.18 E-value=0.0066 Score=64.41 Aligned_cols=91 Identities=12% Similarity=0.147 Sum_probs=52.3
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcC----CCCCCccHHH-----
Q 042574 160 DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQ----SLPENEDKVR----- 230 (929)
Q Consensus 160 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~----~~~~~~~~~~----- 230 (929)
.....++|+|++|+|||||++.+.+........+++ +++-+++...... ++.+.+.. ...+......
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~-I~~lIGER~~Ev~---~~~~~~~~~vV~atadep~~~r~~~a~ 247 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVL-MVLLIDERPEEVT---EMQRLVKGEVVASTFDEPASRHVQVAE 247 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEE-EEEEESSCHHHHH---HHHTTCSSEEEEECTTSCHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeE-EEEEecCChHHHH---HHHHHhCeEEEEeCCCCCHHHHHHHHH
Confidence 345689999999999999999998876433344544 4577887653221 12222211 1111111111
Q ss_pred HHHHHHHHHH-hcCcEEEEEecCCC
Q 042574 231 RAGRLSEMLK-AKAKFVLILDDMWE 254 (929)
Q Consensus 231 ~~~~l~~~l~-~~~~~LlvlDdv~~ 254 (929)
.+..+.+++. .++.+|+++||+..
T Consensus 248 ~alt~AEyfrd~G~dVLil~DslTR 272 (422)
T 3ice_A 248 MVIEKAKRLVEHKKDVIILLDSITR 272 (422)
T ss_dssp HHHHHHHHHHHTSCEEEEEEECHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEeCchH
Confidence 1112223332 57899999999854
No 240
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.17 E-value=0.025 Score=60.62 Aligned_cols=57 Identities=16% Similarity=0.174 Sum_probs=40.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhc---CCCcEEEEEEECCCCCHHHHHHHHHHHhc
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLDLIKLQTEIATALK 219 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l~ 219 (929)
..++.|+|.+|+||||||.+++....... +.-..++|++....++...+.. ++..++
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 47999999999999999999988642111 0234689999888777665543 344444
No 241
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.13 E-value=0.018 Score=61.24 Aligned_cols=91 Identities=14% Similarity=0.226 Sum_probs=55.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhc---CCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCC---------CCccHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKET---NKFNVVIWVTVSQPLDLIKLQTEIATALKQSLP---------ENEDKV 229 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 229 (929)
..++.|+|.+|+||||||.+++....... +.-..++|++....++..++. +++..++.... ...+..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 46999999999999999999987642110 013468999988877766654 34455543210 011111
Q ss_pred ---HHHHHHHHHHHh-cCcEEEEEecCC
Q 042574 230 ---RRAGRLSEMLKA-KAKFVLILDDMW 253 (929)
Q Consensus 230 ---~~~~~l~~~l~~-~~~~LlvlDdv~ 253 (929)
.....+...+.+ .+.-+||+|.+.
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 213 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVT 213 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTT
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcH
Confidence 122333334433 567788888874
No 242
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.09 E-value=0.11 Score=56.97 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=24.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
...+|.++|.+|+||||++.+++..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 368999999999999999999998874
No 243
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.08 E-value=0.011 Score=66.30 Aligned_cols=48 Identities=25% Similarity=0.313 Sum_probs=34.4
Q ss_pred ccccccch-HHHHHHHHHHhcCCC--eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKT-KKVVERIWEDLMGDK--VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~-~~~~~~l~~~l~~~~--~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..++|.+. .+.+..+++.+..+. .+-+.++|++|+|||++|+.+++..
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l 87 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQEL 87 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHh
Confidence 67899832 122334455554443 3578999999999999999999987
No 244
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.07 E-value=0.0054 Score=73.88 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=33.1
Q ss_pred ccccccchHHHHHHHHHHhcC-------C--CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMG-------D--KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~-------~--~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..++|. +..++.+...+.. . ....+.++|++|+|||++|+.+++..
T Consensus 458 ~~v~g~--~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQ--DKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSC--HHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCH--HHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 457787 4555555554431 1 13479999999999999999999876
No 245
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.06 E-value=0.017 Score=61.39 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=40.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhc---------CCC----cEEEEEEECCCCCHHHHHHHHHHHhcC
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKET---------NKF----NVVIWVTVSQPLDLIKLQTEIATALKQ 220 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------~~f----~~~~wv~~s~~~~~~~~~~~i~~~l~~ 220 (929)
..++.|+|.+|+||||||.+++....... ... ..++|++....++..++.+ ++..++.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~ 168 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGI 168 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCC
Confidence 46999999999999999999887531110 111 4789999888777766653 3455543
No 246
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.04 E-value=0.019 Score=69.05 Aligned_cols=128 Identities=12% Similarity=0.172 Sum_probs=69.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKA 241 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (929)
...|.|+|++|+||||||+.++.... .. .+.+..++ +.... ..........+.+....
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l~---~~---~i~v~~~~--------------l~~~~--~g~~~~~l~~vf~~a~~ 295 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANETG---AF---FFLINGPE--------------IMSKL--AGESESNLRKAFEEAEK 295 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTTT---CE---EEEEEHHH--------------HSSSS--TTHHHHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcC---Cc---EEEEEchH--------------hhhhh--hhhHHHHHHHHHHHHHh
Confidence 46799999999999999999988651 11 23333211 11111 11222333344444444
Q ss_pred cCcEEEEEecCCCcCC-------------ccccc---cCCCCCCCCcEEEEEeCcc-cccccC----Ccce-EecccCCH
Q 042574 242 KAKFVLILDDMWEAFP-------------LEEVG---IPEPSEENGCKLVITTRSL-GVSRSM----DCKE-IGVELLSQ 299 (929)
Q Consensus 242 ~~~~LlvlDdv~~~~~-------------~~~l~---~~~~~~~~gs~ilvTtR~~-~v~~~~----~~~~-~~l~~L~~ 299 (929)
..+.++++|++..... ...+. .... ...+..||.||... .+...+ .... +.+...+.
T Consensus 296 ~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~ 374 (806)
T 1ypw_A 296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDA 374 (806)
T ss_dssp HCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCH
T ss_pred cCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccccEEEecccCCchhcCHHHhcccccccccccCCCCH
Confidence 5689999999953211 00111 1111 12344555555543 222211 1112 77888889
Q ss_pred HHHHHHHHhhhcc
Q 042574 300 EEALNLFLDKVRI 312 (929)
Q Consensus 300 ~~~~~Lf~~~~~~ 312 (929)
++-.+++...+..
T Consensus 375 ~~r~~il~~~~~~ 387 (806)
T 1ypw_A 375 TGRLEILQIHTKN 387 (806)
T ss_dssp HHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhc
Confidence 9999998876543
No 247
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.00 E-value=0.019 Score=64.48 Aligned_cols=48 Identities=23% Similarity=0.309 Sum_probs=33.4
Q ss_pred ccccccch-HHHHHHHHHHhcCC---------CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKT-KKVVERIWEDLMGD---------KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~-~~~~~~l~~~l~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+++|.+. ...+.+++..+... -.+-|.|+|++|+||||||+.++...
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 67888742 23344555554331 12348999999999999999999875
No 248
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.95 E-value=0.022 Score=62.13 Aligned_cols=137 Identities=14% Similarity=0.255 Sum_probs=99.6
Q ss_pred cccccEEEcccCCCCcCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCCcccCc-cccccccccee
Q 042574 496 EENLERVSLMDNHIEEIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNIEVLPS-SVSNLTNLRSL 574 (929)
Q Consensus 496 ~~~l~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L 574 (929)
..+++.+.+..+ +..+....+..+..|+.+.+..+ +..+....|.++..|+.+.+..+ +..++. .+.++.+|+.+
T Consensus 216 ~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 216 GKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred ccccceeeeccc-eeEEccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence 345666666543 55666677778899999988765 66777777888899999998654 566654 46788999999
Q ss_pred ecccccccccCc--cccccCCCCEEEccCCCCcccccc-ccCCCCCCEEEccCCCCccCCCCccCCCC
Q 042574 575 LLRWCRRLKRVP--SVAKLLALQYLDLERTWIEEVPEG-MEMLENLSHLYLSSPPLKKFPTGILPRLR 639 (929)
Q Consensus 575 ~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~l~~l~ 639 (929)
.+.++ .++.++ .+.++.+|+.+.+..+ ++.+... +.++++|+.+.+..+ ++.+..+.|.+++
T Consensus 292 ~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 292 VMDNS-AIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp EECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred ccccc-ccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 98764 455555 5888999999999654 6667554 788899998888543 6666666666654
No 249
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.95 E-value=0.21 Score=54.99 Aligned_cols=90 Identities=21% Similarity=0.194 Sum_probs=48.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECC-CCCHHHHHHHHHHHhcCCCCC---CccHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQTEIATALKQSLPE---NEDKVRRAGRLS 236 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~ 236 (929)
..++|.|+|.+|+||||+|..++..+.. ... ..+.-+++.. .....+.+.......+...-. ..+.........
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~-~~G-~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l 176 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLRE-KHK-KKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAAL 176 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHH-TSC-CCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-hcC-CeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHH
Confidence 3679999999999999999999988743 212 2355555543 223333333344444432111 123333333334
Q ss_pred HHHHhcCcEEEEEecC
Q 042574 237 EMLKAKAKFVLILDDM 252 (929)
Q Consensus 237 ~~l~~~~~~LlvlDdv 252 (929)
..+.....=++|+|-.
T Consensus 177 ~~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 177 KEAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHhCCCCEEEEECC
Confidence 4443222235666764
No 250
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.89 E-value=0.0088 Score=59.11 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcC--CCeeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 148 KVVERIWEDLMG--DKVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 148 ~~~~~l~~~l~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
..+++|.+.+.. ....+|+|+|+.|+|||||++.+.....
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345566666553 4567999999999999999999988773
No 251
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.77 E-value=0.014 Score=61.54 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=33.6
Q ss_pred HHHHHHHHhcCC---CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEE
Q 042574 149 VVERIWEDLMGD---KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 201 (929)
Q Consensus 149 ~~~~l~~~l~~~---~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 201 (929)
..+.+.+++... ....+.|+|++|+|||+||+.+++...... .+ .+.++++
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~-g~-~v~~~~~ 189 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-GV-STTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS-CC-CEEEEEH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc-CC-cEEEEEH
Confidence 344444555431 246899999999999999999999873122 22 3455554
No 252
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.77 E-value=0.021 Score=61.17 Aligned_cols=84 Identities=18% Similarity=0.226 Sum_probs=52.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLP-----ENEDKVRRAGRLS 236 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 236 (929)
.+++.|+|.+|+||||||.+++...... -..++|++....++.. .+..++.... ...+..+.. .+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~---g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l-~~~ 131 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAA---GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQAL-EIA 131 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHH-HHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHH-HHH
Confidence 4689999999999999999998776322 2357899887766643 2444543221 111222222 233
Q ss_pred HHHH-hcCcEEEEEecCCC
Q 042574 237 EMLK-AKAKFVLILDDMWE 254 (929)
Q Consensus 237 ~~l~-~~~~~LlvlDdv~~ 254 (929)
+.+. ..+.-++|+|.+..
T Consensus 132 ~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 132 DMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHHTTTCCSEEEEECGGG
T ss_pred HHHHhcCCCCEEEEcChHh
Confidence 3332 34567899999854
No 253
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.73 E-value=0.028 Score=58.01 Aligned_cols=125 Identities=16% Similarity=0.128 Sum_probs=65.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHhcC
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKAKA 243 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~ 243 (929)
-+.++|++|+||||||+.++.... . ..+++...+-.+. ...........+.+......
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~---~---~~i~i~g~~l~~~----------------~~~~~~~~i~~vf~~a~~~~ 103 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESG---L---NFISVKGPELLNM----------------YVGESERAVRQVFQRAKNSA 103 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTT---C---EEEEEETTTTCSS----------------TTHHHHHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCcHHHHHHHHHHHcC---C---CEEEEEcHHHHhh----------------hhhHHHHHHHHHHHHHHhcC
Confidence 399999999999999999998752 1 2344443221110 00111122233333322346
Q ss_pred cEEEEEecCCCcCC---------ccc----cccCCCC--CCCCcEEEEEeCccccccc-----CCcce-EecccCCHHHH
Q 042574 244 KFVLILDDMWEAFP---------LEE----VGIPEPS--EENGCKLVITTRSLGVSRS-----MDCKE-IGVELLSQEEA 302 (929)
Q Consensus 244 ~~LlvlDdv~~~~~---------~~~----l~~~~~~--~~~gs~ilvTtR~~~v~~~-----~~~~~-~~l~~L~~~~~ 302 (929)
+.++++|+++.... ... +...+.. .....-++.+|...++... ..-.. +.++..+.++-
T Consensus 104 p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r 183 (274)
T 2x8a_A 104 PCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADR 183 (274)
T ss_dssp SEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHH
T ss_pred CCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHH
Confidence 88999999964210 000 0001111 1223445556665443211 01122 77888888888
Q ss_pred HHHHHhhh
Q 042574 303 LNLFLDKV 310 (929)
Q Consensus 303 ~~Lf~~~~ 310 (929)
.++++...
T Consensus 184 ~~il~~~~ 191 (274)
T 2x8a_A 184 LAILKTIT 191 (274)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 88887665
No 254
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.72 E-value=0.0056 Score=74.55 Aligned_cols=46 Identities=17% Similarity=0.357 Sum_probs=33.0
Q ss_pred ccccccchHHHHHHHHHHhcC-------C--CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMG-------D--KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~-------~--~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..++|+ +..+..+...+.. . ....+.|+|++|+|||++|+.+.+..
T Consensus 558 ~~viG~--~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 558 KRVVGQ--DEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HHSCSC--HHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred cccCCc--HHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 346887 4555555544421 1 13589999999999999999999876
No 255
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.65 E-value=0.029 Score=56.35 Aligned_cols=38 Identities=24% Similarity=0.244 Sum_probs=28.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEEC
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVS 202 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 202 (929)
..+++|+|++|+|||||++.++...... + ..+.|+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~-~--~~v~~~~~~ 60 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD-G--DPCIYVTTE 60 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH-T--CCEEEEESS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC-C--CeEEEEEcc
Confidence 3689999999999999999998765322 1 236666543
No 256
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.60 E-value=0.027 Score=60.52 Aligned_cols=85 Identities=19% Similarity=0.217 Sum_probs=52.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLP-----ENEDKVRRAGRLS 236 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 236 (929)
.+++.|.|.+|+||||||.+++..... . -..++|++....++.. .+..++.+.. ...+.......+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~-~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQK-A--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH-T--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHH-C--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 468999999999999999999887632 1 2358999988766643 2444443211 1122222222222
Q ss_pred HHHHhcCcEEEEEecCCC
Q 042574 237 EMLKAKAKFVLILDDMWE 254 (929)
Q Consensus 237 ~~l~~~~~~LlvlDdv~~ 254 (929)
........-+||+|.+..
T Consensus 146 ~l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHHTTTCCSEEEEECTTT
T ss_pred HHHhcCCCCEEEEeChHH
Confidence 222234566899999853
No 257
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.57 E-value=0.028 Score=60.28 Aligned_cols=84 Identities=20% Similarity=0.283 Sum_probs=51.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLP-----ENEDKVRRAGRLS 236 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 236 (929)
.+++.|.|.+|+||||||.+++...... -..++|++....++.. .+..++.... ...+... ...+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~---g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~-~~~~~ 133 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQ-ALEIC 133 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHH-HHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHH-HHHHH
Confidence 4689999999999999999998876322 2358899887776643 2344443211 1112222 22233
Q ss_pred HHH-HhcCcEEEEEecCCC
Q 042574 237 EML-KAKAKFVLILDDMWE 254 (929)
Q Consensus 237 ~~l-~~~~~~LlvlDdv~~ 254 (929)
+.+ ...+.-++|+|.+..
T Consensus 134 ~~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 134 DALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHHTCCSEEEEECGGG
T ss_pred HHHHhccCCCEEEEcCHHH
Confidence 332 234566899999843
No 258
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.52 E-value=0.034 Score=61.05 Aligned_cols=89 Identities=19% Similarity=0.328 Sum_probs=52.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCC-HHHHHHHHHHHhcC-------CCCCCccHHHH---
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQTEIATALKQ-------SLPENEDKVRR--- 231 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~-------~~~~~~~~~~~--- 231 (929)
..++|+|.+|+|||||+..+....... ..+..+++.+++..+ ..++..++...-.. ....+......
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~--~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~ 229 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE--HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH--TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc--cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence 468999999999999999998876332 223456777776643 34444444332000 01111111111
Q ss_pred --HHHHHHHHH--hcCcEEEEEecCC
Q 042574 232 --AGRLSEMLK--AKAKFVLILDDMW 253 (929)
Q Consensus 232 --~~~l~~~l~--~~~~~LlvlDdv~ 253 (929)
...+.+.+. +++++|+++||+.
T Consensus 230 ~~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 230 LTGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 123444444 4889999999994
No 259
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.45 E-value=0.042 Score=57.35 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=46.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECC-CCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEML 239 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 239 (929)
...+|+|+|++|+||||++..++.......+ ..+..+.... .....+.+.......+.+.....+.... ......+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l-~~al~~~ 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEF-QQAKELF 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHH-HHHHHHG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHH-HHHHHHh
Confidence 3579999999999999999999988732222 2355555432 2233333444343333332111222222 1222222
Q ss_pred HhcCcEEEEEec
Q 042574 240 KAKAKFVLILDD 251 (929)
Q Consensus 240 ~~~~~~LlvlDd 251 (929)
.+.=++|+|-
T Consensus 181 --~~~dlvIiDT 190 (296)
T 2px0_A 181 --SEYDHVFVDT 190 (296)
T ss_dssp --GGSSEEEEEC
T ss_pred --cCCCEEEEeC
Confidence 3355778884
No 260
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.45 E-value=0.05 Score=59.16 Aligned_cols=92 Identities=11% Similarity=0.156 Sum_probs=53.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhh---cCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCC---------CCccH-
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKE---TNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLP---------ENEDK- 228 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~~~~~- 228 (929)
-.++.|+|++|+|||||+..++-..... ...-..++|++....++...+. .+++.++.... ...+.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCChH
Confidence 4699999999999999999876432111 1123568888877666655443 35555543210 01111
Q ss_pred --HHHHHHHHHHHHhcCcEEEEEecCCC
Q 042574 229 --VRRAGRLSEMLKAKAKFVLILDDMWE 254 (929)
Q Consensus 229 --~~~~~~l~~~l~~~~~~LlvlDdv~~ 254 (929)
......+...+...+.-+||+|.+..
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 12223333444445678889998743
No 261
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.34 E-value=0.06 Score=53.84 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=31.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhh--cC-CCcEEEEEEECCCCCH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKE--TN-KFNVVIWVTVSQPLDL 207 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~-~f~~~~wv~~s~~~~~ 207 (929)
-.+++|+|++|+|||||++.++...... .. ....++|+........
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 4699999999999999999998753211 11 2345778875544343
No 262
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.20 E-value=0.092 Score=54.50 Aligned_cols=28 Identities=29% Similarity=0.140 Sum_probs=24.8
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 160 DKVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 160 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
....+|+|+|+.|+||||||+.+...+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4568999999999999999999988774
No 263
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.18 E-value=0.011 Score=56.12 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=22.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+|.|.|++|+||||+|+.+....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998876
No 264
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.13 E-value=0.096 Score=57.38 Aligned_cols=91 Identities=19% Similarity=0.278 Sum_probs=58.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCC-HHHHHHHHHHHhcCC-------------CCCCc
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQTEIATALKQS-------------LPENE 226 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~-------------~~~~~ 226 (929)
.-..++|.|.+|+|||+|+.++.+... ..+-+.++++-+++... +.++.+++...-... ..+..
T Consensus 152 kGQr~~Ifgg~G~GKT~L~~~i~~~~~--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p 229 (482)
T 2ck3_D 152 KGGKIGLFGGAGVGKTVLIMELINNVA--KAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEP 229 (482)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHTT--TTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSC
T ss_pred cCCeeeeecCCCCChHHHHHHHHHhhH--hhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCC
Confidence 346799999999999999999988752 23446678888888754 456666666542211 01111
Q ss_pred cHH-----HHHHHHHHHHH--hcCcEEEEEecCC
Q 042574 227 DKV-----RRAGRLSEMLK--AKAKFVLILDDMW 253 (929)
Q Consensus 227 ~~~-----~~~~~l~~~l~--~~~~~LlvlDdv~ 253 (929)
... ..+..+.++++ +++.+||++||+.
T Consensus 230 ~~~r~~~~~~a~tiAEyfrd~~G~dVLll~Dsit 263 (482)
T 2ck3_D 230 PGARARVALTGLTVAEYFRDQEGQDVLLFIDNIF 263 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 111 11223445554 4799999999984
No 265
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.03 E-value=0.023 Score=55.66 Aligned_cols=39 Identities=18% Similarity=0.392 Sum_probs=30.1
Q ss_pred HHHHHHHHHhcC---CCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 148 KVVERIWEDLMG---DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 148 ~~~~~l~~~l~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..++.+.+.+.. ....+|+|.|+.|+||||+++.+....
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344555555543 346799999999999999999998876
No 266
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.00 E-value=0.013 Score=56.11 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998875
No 267
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.99 E-value=0.022 Score=54.74 Aligned_cols=116 Identities=22% Similarity=0.157 Sum_probs=60.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECC---CCCHHHHHHHHHH---HhcCCCC-CCcc---HHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ---PLDLIKLQTEIAT---ALKQSLP-ENED---KVRRA 232 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~i~~---~l~~~~~-~~~~---~~~~~ 232 (929)
..|-|++..|.||||.|-.+.-+.. ++-..+.++..-. ..+...++..+.- +.+..+. ...+ ....+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~---g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a 105 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV---GHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAAC 105 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH---HTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHH
Confidence 5677777778999999999888763 2333466665443 2333444433310 0000011 1111 11111
Q ss_pred ----HHHHHHHHhcCcEEEEEecCCC-----cCCccccccCCCCCCCCcEEEEEeCcc
Q 042574 233 ----GRLSEMLKAKAKFVLILDDMWE-----AFPLEEVGIPEPSEENGCKLVITTRSL 281 (929)
Q Consensus 233 ----~~l~~~l~~~~~~LlvlDdv~~-----~~~~~~l~~~~~~~~~gs~ilvTtR~~ 281 (929)
....+.+..++-=|||||++-. ....+++...+........||+|+|..
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 2223333345677999999842 233333333333334567899999984
No 268
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.90 E-value=0.015 Score=56.98 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|.|+|++|+||||+|+.+....
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999876
No 269
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.85 E-value=0.014 Score=55.78 Aligned_cols=20 Identities=35% Similarity=0.441 Sum_probs=18.9
Q ss_pred eEEEEEcCCCChHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEI 182 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v 182 (929)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 270
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.84 E-value=0.0057 Score=56.33 Aligned_cols=44 Identities=9% Similarity=0.119 Sum_probs=27.0
Q ss_pred cccccchHHHHHHHHHHhc---CCCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 140 TLAGKKTKKVVERIWEDLM---GDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 140 ~~vGr~~~~~~~~l~~~l~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.++|++ ..+.++.+.+. ... .-|.|+|.+|+|||++|+.+++..
T Consensus 5 ~~iG~s--~~~~~l~~~~~~~~~~~-~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNS--AAIQEMNREVEAAAKRT-SPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCC--HHHHHHHHHHHHHHTCS-SCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCC--HHHHHHHHHHHHHhCCC-CcEEEECCCCccHHHHHHHHHHhC
Confidence 467773 33344443332 222 347799999999999999887753
No 271
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.83 E-value=0.099 Score=54.64 Aligned_cols=87 Identities=20% Similarity=0.198 Sum_probs=47.5
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCH--HHHHHHHHHHhcCCCC---CCccHHHH-HHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDL--IKLQTEIATALKQSLP---ENEDKVRR-AGR 234 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~i~~~l~~~~~---~~~~~~~~-~~~ 234 (929)
...+|+|+|++|+||||++..++..... . -..+.++... .+.. .+.+...++..+...- ...+.... ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~-~--g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~a 178 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD-E--GKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDA 178 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH-T--TCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh-c--CCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 3579999999999999999999988742 2 2235555543 2322 2223344555443211 11122222 123
Q ss_pred HHHHHHhcCcEEEEEecC
Q 042574 235 LSEMLKAKAKFVLILDDM 252 (929)
Q Consensus 235 l~~~l~~~~~~LlvlDdv 252 (929)
+...+. .+.-++|+|-.
T Consensus 179 l~~a~~-~~~dvvIiDtp 195 (306)
T 1vma_A 179 VAHALA-RNKDVVIIDTA 195 (306)
T ss_dssp HHHHHH-TTCSEEEEEEC
T ss_pred HHHHHh-cCCCEEEEECC
Confidence 333333 34447788865
No 272
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.81 E-value=0.48 Score=50.03 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=36.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
..++.|.|.+|+||||||..++..... .-..++|++.. -+..++...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCC--CCHHHHHHHHHHH
Confidence 358999999999999999999888743 23457777653 4556666665443
No 273
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.80 E-value=0.29 Score=51.69 Aligned_cols=58 Identities=26% Similarity=0.310 Sum_probs=37.4
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECC-CCCHHHHHHHHHHHhcC
Q 042574 160 DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ-PLDLIKLQTEIATALKQ 220 (929)
Q Consensus 160 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~i~~~l~~ 220 (929)
....+++|+|+.|+||||+++.++..... ... .+.++...- .....+.+....+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~--~~g-~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN--HGF-SVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH--TTC-CEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCC-EEEEEeecccccchHHHHHHHHHHcCc
Confidence 34689999999999999999999987732 222 244444322 22334445555666553
No 274
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.79 E-value=0.017 Score=55.75 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+.|.|+|++|+||||+|+.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999876
No 275
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.74 E-value=0.12 Score=56.47 Aligned_cols=38 Identities=26% Similarity=0.236 Sum_probs=28.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEEC
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVS 202 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s 202 (929)
..+|.++|++|+||||++..++..+.. . .. .+..+++.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~-~-G~-kVllv~~D 134 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKK-R-GY-KVGLVAAD 134 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHH-T-TC-CEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-c-CC-eEEEEecC
Confidence 679999999999999999999988742 2 22 34555543
No 276
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.73 E-value=0.016 Score=55.66 Aligned_cols=24 Identities=17% Similarity=0.396 Sum_probs=22.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
++++|+|+.|+|||||++.+....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998764
No 277
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.71 E-value=0.14 Score=53.91 Aligned_cols=51 Identities=10% Similarity=0.107 Sum_probs=37.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATA 217 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~ 217 (929)
..++.|.|.+|+||||||.+++..... .+ ..++|++.. .+..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~-~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSD-ND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHT-TT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH-cC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 468999999999999999999877632 22 568888755 4556666555543
No 278
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.69 E-value=0.02 Score=56.07 Aligned_cols=28 Identities=36% Similarity=0.407 Sum_probs=24.9
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 160 DKVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 160 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
....+|+|+|++|+||||+|+.+.....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567999999999999999999998873
No 279
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.66 E-value=0.018 Score=55.20 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINN 184 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~ 184 (929)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 280
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.65 E-value=0.1 Score=52.68 Aligned_cols=39 Identities=21% Similarity=0.107 Sum_probs=29.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECC
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 203 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 203 (929)
..++.|.|++|+||||||.+++...... -..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM---GEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc---CCeEEEEEccC
Confidence 3689999999999999999887765321 23477777544
No 281
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.64 E-value=0.36 Score=53.83 Aligned_cols=50 Identities=18% Similarity=0.139 Sum_probs=34.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIA 215 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 215 (929)
..++.|.|.+|+||||||..++....... -..++|++... +..++...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT--NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS--SCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC--CCcEEEEECCC--CHHHHHHHHH
Confidence 35899999999999999999998874321 23577776543 3455555443
No 282
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.61 E-value=0.016 Score=55.24 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+|+|+|+.|+||||+++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998875
No 283
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.59 E-value=0.017 Score=56.02 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNR 185 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~ 185 (929)
..+++|+|++|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999774
No 284
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.53 E-value=0.048 Score=48.97 Aligned_cols=54 Identities=17% Similarity=0.257 Sum_probs=30.8
Q ss_pred EEEcccCCCC--cCCCCCCCCCCcccEEEcccCCcCccCcHHHHccCCCCcEEEecCCCC
Q 042574 501 RVSLMDNHIE--EIPSNMSPHCKILSTLLLQRNGYLQRIPECFFMHMRGLKVLNLSHTNI 558 (929)
Q Consensus 501 ~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 558 (929)
+++-+++.+. .+|..+. ++|+.|+|++|. +..+|..+|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp---~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP---VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC---TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC---cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence 4555555555 5554332 346666666665 5556665566666666666666654
No 285
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.52 E-value=0.048 Score=48.99 Aligned_cols=54 Identities=22% Similarity=0.359 Sum_probs=44.2
Q ss_pred CEEEccCCCCc--cccccccCCCCCCEEEccCCCCccCCCCccCCCCCccEEEeecCC
Q 042574 595 QYLDLERTWIE--EVPEGMEMLENLSHLYLSSPPLKKFPTGILPRLRNLYKLKLSFGN 650 (929)
Q Consensus 595 ~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 650 (929)
..++.++.+++ .+|..+. ++|++|+|++|.++.++.+.|..+++|+.|+|..|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 36777777887 8886543 478999999999999999888999999999998764
No 286
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.52 E-value=0.017 Score=56.65 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 287
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.52 E-value=0.027 Score=59.71 Aligned_cols=53 Identities=23% Similarity=0.194 Sum_probs=36.7
Q ss_pred HHHHHhcC-CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCC
Q 042574 152 RIWEDLMG-DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 205 (929)
Q Consensus 152 ~l~~~l~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 205 (929)
++++.+.. +....++|+|.+|+|||+|++++.+........+.+ +++-+++..
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~-V~~lIGER~ 217 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIR-IILLIDERP 217 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEE-EEEECSCCH
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEE-EEEEeccCc
Confidence 44455533 345689999999999999999999976433334444 567777653
No 288
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.51 E-value=0.022 Score=55.78 Aligned_cols=27 Identities=30% Similarity=0.496 Sum_probs=23.4
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 160 DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 160 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
....+|+|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999998865
No 289
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.49 E-value=0.14 Score=54.71 Aligned_cols=157 Identities=9% Similarity=-0.016 Sum_probs=92.0
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHH
Q 042574 160 DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEML 239 (929)
Q Consensus 160 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 239 (929)
.-.++..++|+.|.||++.|+.+...... ..|+....+.+....++.++...+.. ..+
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~pl 73 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAA--QGFEEHHTFSIDPNTDWNAIFSLCQA--------------------MSL 73 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHH--HTCCEEEEEECCTTCCHHHHHHHHHH--------------------HHH
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHh--CCCCeeEEEEecCCCCHHHHHHHhcC--------------------cCC
Confidence 34679999999999999999999887632 23432222233333344333322110 011
Q ss_pred HhcCcEEEEEecCCC-c--CCccccccCCCCCCCCcEEEEEeCc-------ccccccC--CcceEecccCCHHHHHHHHH
Q 042574 240 KAKAKFVLILDDMWE-A--FPLEEVGIPEPSEENGCKLVITTRS-------LGVSRSM--DCKEIGVELLSQEEALNLFL 307 (929)
Q Consensus 240 ~~~~~~LlvlDdv~~-~--~~~~~l~~~~~~~~~gs~ilvTtR~-------~~v~~~~--~~~~~~l~~L~~~~~~~Lf~ 307 (929)
-+++-++|+|++.. . ...+.+...+..-..++.+|++|.. ..+.... .+..++..+++.++....+.
T Consensus 74 -f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 74 -FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp -CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHH
T ss_pred -ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHH
Confidence 25677889999865 2 2233333222222346777766643 1222221 22238888999999988887
Q ss_pred hhhcccCCCCCcchHHHHHHHHHhcCCccHHHHHH
Q 042574 308 DKVRISTSQIPNLDKEIINSVVEECDGLPLAIVTV 342 (929)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 342 (929)
+.+..... .-.++.+..+++.++|...++...
T Consensus 153 ~~~~~~g~---~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 153 ARAKQLNL---ELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHHTTC---EECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHcCC---CCCHHHHHHHHHHhchHHHHHHHH
Confidence 77644321 223567888999999988777553
No 290
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.48 E-value=0.022 Score=55.34 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=22.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
.+|.|.|++|+||||+|+.+...+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999873
No 291
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.46 E-value=0.39 Score=53.31 Aligned_cols=51 Identities=12% Similarity=-0.011 Sum_probs=36.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIAT 216 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 216 (929)
..++.|.|.+|+||||||..++...... .-..++|++.. .+..++...++.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK--EGVGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEESS--SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEECC--CCHHHHHHHHHH
Confidence 3589999999999999999998876321 22357777654 345566665544
No 292
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.46 E-value=0.13 Score=55.11 Aligned_cols=47 Identities=21% Similarity=0.286 Sum_probs=32.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhh--cCC-CcEEEEEEECCCCCHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKE--TNK-FNVVIWVTVSQPLDLI 208 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~~-f~~~~wv~~s~~~~~~ 208 (929)
-.++.|+|++|+|||||+..++...... .+. -..++|++....+...
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~ 180 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 180 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHH
Confidence 5799999999999999999998765111 111 1245888876554433
No 293
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.41 E-value=0.023 Score=55.07 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=22.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+|.|.|++|+||||+|+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999977
No 294
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.36 E-value=0.024 Score=57.80 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+|.|.|++|+||||||+.++...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 478999999999999999998876
No 295
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.36 E-value=0.021 Score=54.87 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.++|.|+|++|+||||+|+.+....
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998876
No 296
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.34 E-value=0.026 Score=53.82 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|+|+|+.|+||||+|+.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 297
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.33 E-value=0.027 Score=54.68 Aligned_cols=25 Identities=32% Similarity=0.314 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998876
No 298
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.31 E-value=0.021 Score=54.49 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
++|.|.|++|+||||+|+.++...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 358999999999999999999876
No 299
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.30 E-value=0.1 Score=57.38 Aligned_cols=91 Identities=22% Similarity=0.313 Sum_probs=58.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCC-HHHHHHHHHHHhcCC-------C------CCCc
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQTEIATALKQS-------L------PENE 226 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~-------~------~~~~ 226 (929)
.-..++|.|.+|+|||+|+.++.+... ..+-+.++++-+++... ..++.+++...-... . ..+.
T Consensus 164 kGqr~gIfgg~GvGKT~L~~~l~~~~a--~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~ 241 (498)
T 1fx0_B 164 RGGKIGLFGGAGVGKTVLIMELINNIA--KAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNE 241 (498)
T ss_dssp TTCCEEEEECSSSSHHHHHHHHHHHTT--TTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTS
T ss_pred cCCeEEeecCCCCCchHHHHHHHHHHH--hhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCC
Confidence 345799999999999999999988752 23456788998988764 456666665431111 0 0011
Q ss_pred cHH------HHHHHHHHHHHh--cCcEEEEEecCC
Q 042574 227 DKV------RRAGRLSEMLKA--KAKFVLILDDMW 253 (929)
Q Consensus 227 ~~~------~~~~~l~~~l~~--~~~~LlvlDdv~ 253 (929)
... ..+..+.++++. ++.+||++||+.
T Consensus 242 p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 242 PPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp CHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 111 122334455543 789999999984
No 300
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.24 E-value=0.027 Score=53.26 Aligned_cols=25 Identities=24% Similarity=0.465 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|+|.|+.|+||||+|+.+...+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999999876
No 301
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.22 E-value=0.13 Score=53.50 Aligned_cols=88 Identities=19% Similarity=0.118 Sum_probs=49.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCC-CCHHHHHHHHHHHhcCCCC---CCccHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP-LDLIKLQTEIATALKQSLP---ENEDKVRRAGRLSE 237 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 237 (929)
..+++++|.+|+||||++..++..... . -..+.++..... ....+.+.......+...- ...+..........
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~-~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~ 174 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK-K--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVE 174 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH-T--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-C--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHH
Confidence 578999999999999999999988742 2 223566654432 2233334444555544321 11233333334444
Q ss_pred HHHhcCcEEEEEecC
Q 042574 238 MLKAKAKFVLILDDM 252 (929)
Q Consensus 238 ~l~~~~~~LlvlDdv 252 (929)
.+.....=++|+|-.
T Consensus 175 ~~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 175 KFLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 443222336777764
No 302
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.19 E-value=0.024 Score=55.63 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998764
No 303
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.18 E-value=0.14 Score=53.44 Aligned_cols=88 Identities=14% Similarity=0.107 Sum_probs=46.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCC-CHHHHHHHHHHHhcCCCC---CCccHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQTEIATALKQSLP---ENEDKVRRAGRLSE 237 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 237 (929)
..+++|+|.+|+||||++..++..... . -..+.++...... .....+.......+...- ...+..........
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~-~--~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG-K--GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH-T--TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-c--CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999999999999988732 2 1235555543221 111223334444443211 11223233233333
Q ss_pred HHHhcCcEEEEEecC
Q 042574 238 MLKAKAKFVLILDDM 252 (929)
Q Consensus 238 ~l~~~~~~LlvlDdv 252 (929)
.....+.=++|+|--
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 332234556778865
No 304
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.18 E-value=0.049 Score=57.51 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=26.2
Q ss_pred hcCCCeeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 157 LMGDKVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 157 l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
+..+....|.|+|++|+||||+++.++....
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3456677899999999999999999988763
No 305
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.16 E-value=0.096 Score=67.67 Aligned_cols=86 Identities=16% Similarity=0.212 Sum_probs=55.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLP-----ENEDKVRRAGRL 235 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 235 (929)
..++|.|+|++|+|||+||.++...... .-..++|+++...++... ++.++.+.. .....+.....+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~---~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 3579999999999999999999887632 234578888777766555 445553221 111222333333
Q ss_pred HHHHHhcCcEEEEEecCCC
Q 042574 236 SEMLKAKAKFVLILDDMWE 254 (929)
Q Consensus 236 ~~~l~~~~~~LlvlDdv~~ 254 (929)
.+.....+.-+||+|.+..
T Consensus 1498 ~~lvr~~~~~lVVIDsi~a 1516 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVAA 1516 (2050)
T ss_dssp HHHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCCCEEEEcChhH
Confidence 3333456788999999953
No 306
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.14 E-value=0.033 Score=54.98 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=23.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+||.|.|++|+||||.|+.++..+
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999999876
No 307
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.13 E-value=0.03 Score=54.40 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|+|.|++|+||||+|+.+....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998865
No 308
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.11 E-value=0.028 Score=55.06 Aligned_cols=23 Identities=48% Similarity=0.796 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.|+|.|+.|+||||+|+.+...+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999876
No 309
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.11 E-value=0.029 Score=55.35 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...+|+|+|+.|+|||||++.+....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998865
No 310
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.11 E-value=0.023 Score=54.73 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+|.|.|++|+||||+|+.+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999999999998876
No 311
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.10 E-value=0.022 Score=54.97 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=22.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
++++|+|+.|+|||||++.+....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998865
No 312
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.09 E-value=0.03 Score=53.49 Aligned_cols=23 Identities=52% Similarity=0.725 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.++|+|+.|+|||||++.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 313
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.06 E-value=0.029 Score=54.30 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINN 184 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~ 184 (929)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5799999999999999999975
No 314
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.04 E-value=0.03 Score=56.06 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=22.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+|+|+|+.|+||||+|+.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998865
No 315
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.03 E-value=0.033 Score=52.32 Aligned_cols=27 Identities=26% Similarity=0.209 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
..++++|+|..|+|||||+.++...+.
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 357999999999999999999998873
No 316
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.01 E-value=0.033 Score=55.04 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...+|+|+|+.|+|||||++.+....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998875
No 317
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.00 E-value=0.038 Score=53.28 Aligned_cols=27 Identities=37% Similarity=0.438 Sum_probs=24.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
...+|.|.|++|+||||+++.++....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999999999873
No 318
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.98 E-value=0.033 Score=59.54 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=34.0
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..++|+ +..+..+...+..+ .-+.++|++|+|||+||+.+++..
T Consensus 27 ~~i~g~--~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQ--KYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSC--HHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCc--HHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 457887 55666666666543 358899999999999999998865
No 319
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.94 E-value=0.032 Score=53.76 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNR 185 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~ 185 (929)
..+|+|+|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999886
No 320
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.94 E-value=0.044 Score=54.71 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=27.8
Q ss_pred HHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 151 ERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 151 ~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+.+...+......+|+|+|.+|+|||||+..+....
T Consensus 27 ~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 27 DKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 333344444567899999999999999999998875
No 321
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.93 E-value=0.035 Score=53.53 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|+|.|++|+||||+|+.+....
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998865
No 322
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.93 E-value=0.026 Score=55.46 Aligned_cols=25 Identities=28% Similarity=0.575 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|.|+|++|+||||+++.+....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4689999999999999999998865
No 323
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.92 E-value=0.033 Score=54.77 Aligned_cols=25 Identities=32% Similarity=0.298 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|+|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 324
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.91 E-value=0.028 Score=53.37 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+|.|.|++|+||||+|+.+...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998876
No 325
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.90 E-value=0.032 Score=54.24 Aligned_cols=25 Identities=32% Similarity=0.272 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|+|.|++|+||||+|+.+....
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 326
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.89 E-value=0.032 Score=54.38 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|+|.|++|+||||+|+.+...+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998876
No 327
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.87 E-value=0.033 Score=56.82 Aligned_cols=27 Identities=30% Similarity=0.331 Sum_probs=23.4
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 160 DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 160 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
....+|+|.|+.|+||||+|+.+...+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 346799999999999999999998865
No 328
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.87 E-value=0.025 Score=53.72 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEIN 183 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~ 183 (929)
..+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999643
No 329
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.87 E-value=0.5 Score=52.87 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=27.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEE
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTV 201 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~ 201 (929)
..++|+|+|.+|+||||++.+++..+.. . .. .+..|+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~-~-G~-kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQR-K-GW-KTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHH-T-TC-CEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh-C-CC-eEEEEec
Confidence 3679999999999999999999988742 2 22 3455554
No 330
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.86 E-value=0.039 Score=54.09 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...+|+|.|+.|+||||+|+.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998764
No 331
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.86 E-value=0.034 Score=54.44 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.7
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHHH
Q 042574 160 DKVTKIGVWGMGGIGKTTIMKEINNR 185 (929)
Q Consensus 160 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 185 (929)
....+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34679999999999999999998764
No 332
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.85 E-value=0.081 Score=53.92 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
-+.|+|++|+||||||+.++...
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999875
No 333
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.84 E-value=0.049 Score=56.60 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998764
No 334
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.83 E-value=0.031 Score=54.90 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINN 184 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~ 184 (929)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999887
No 335
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.82 E-value=0.044 Score=57.65 Aligned_cols=41 Identities=22% Similarity=0.393 Sum_probs=30.9
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECC
Q 042574 160 DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 203 (929)
Q Consensus 160 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 203 (929)
+..+||+|.|-|||||||.|..++--+.. .+ ..+.-|.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~-~G--kkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI-LG--KRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH-TT--CCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH-CC--CeEEEEecCC
Confidence 35789999999999999999999888743 22 2366666653
No 336
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.79 E-value=0.039 Score=54.90 Aligned_cols=38 Identities=24% Similarity=0.372 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 149 VVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 149 ~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+.+...+......+|+|+|.+|+|||||+..+....
T Consensus 17 ~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 17 LAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34444444444567899999999999999999998875
No 337
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.79 E-value=0.035 Score=56.36 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|+|+|+.|+|||||++.++..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999999999999765
No 338
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=93.79 E-value=0.037 Score=59.57 Aligned_cols=46 Identities=17% Similarity=0.330 Sum_probs=32.4
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..++|.+ ..+..+..........-|.|+|++|+|||++|+.+++..
T Consensus 24 ~~i~G~~--~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 24 SAIVGQE--DMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp GGSCSCH--HHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHS
T ss_pred hhccChH--HHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhC
Confidence 5689983 344444333333333349999999999999999999875
No 339
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.78 E-value=0.055 Score=58.57 Aligned_cols=45 Identities=20% Similarity=0.257 Sum_probs=32.9
Q ss_pred cccccchHHHHHHHHHHhc-------------C--CCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 140 TLAGKKTKKVVERIWEDLM-------------G--DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 140 ~~vGr~~~~~~~~l~~~l~-------------~--~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.++|. +..++.+...+. . .....|.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~--~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQ--EQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSC--HHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCH--HHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 46787 555565655551 1 124578999999999999999999875
No 340
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.78 E-value=0.037 Score=54.56 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=22.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+|.|.|++|+||||+|+.+...+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999999987
No 341
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.73 E-value=0.039 Score=52.15 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 342
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.72 E-value=0.032 Score=54.49 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
++++|+|+.|+|||||++.+....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 579999999999999999998765
No 343
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.71 E-value=0.039 Score=53.49 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|+|.|++|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998875
No 344
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.68 E-value=0.039 Score=54.01 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|.|.|++|+||||+|+.+...+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 345
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.67 E-value=0.039 Score=53.39 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..++|+|+|+.|+|||||++.+....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998764
No 346
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.67 E-value=0.032 Score=53.50 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+.|.|+|++|+|||||++++..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998764
No 347
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.65 E-value=0.036 Score=54.57 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|+|+|++|+||||+|+.+....
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999987753
No 348
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.62 E-value=0.04 Score=53.43 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+|+|.|+.|+||||+|+.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 349
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=93.61 E-value=0.11 Score=56.55 Aligned_cols=89 Identities=15% Similarity=0.195 Sum_probs=54.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCc----EEEEEEECCCC-CHHHHHHHHHHHh--cC-----CCCCCccHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFN----VVIWVTVSQPL-DLIKLQTEIATAL--KQ-----SLPENEDKV 229 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~----~~~wv~~s~~~-~~~~~~~~i~~~l--~~-----~~~~~~~~~ 229 (929)
-..++|.|..|+|||+|+.++++... .+.+ .++++-+++.. .+.++.+++...- .. ...+.....
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~~~---~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~ 227 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQAT---VLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIE 227 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCB---CSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHH
T ss_pred CCEEEEeCCCCcChHHHHHHHHHHHH---hccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHH
Confidence 34588999999999999999988652 2223 67788888765 3455556554431 10 111111111
Q ss_pred H-----HHHHHHHHHH--hcCcEEEEEecCC
Q 042574 230 R-----RAGRLSEMLK--AKAKFVLILDDMW 253 (929)
Q Consensus 230 ~-----~~~~l~~~l~--~~~~~LlvlDdv~ 253 (929)
. .+..+.++++ .++.+|+++||+.
T Consensus 228 r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 228 RIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 1 1234556665 3799999999984
No 350
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.59 E-value=0.042 Score=53.15 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.-.+|+|+|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35799999999999999999998764
No 351
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.58 E-value=0.035 Score=54.54 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=20.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINN 184 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~ 184 (929)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999866
No 352
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.57 E-value=0.065 Score=58.35 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...|.++|++|+|||++|+.+++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999875
No 353
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.51 E-value=0.045 Score=54.48 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...|.|.|++|+||||+|+.++..+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998876
No 354
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.48 E-value=0.054 Score=55.24 Aligned_cols=26 Identities=31% Similarity=0.350 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...+|.|+|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998875
No 355
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.44 E-value=0.033 Score=53.51 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=18.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999998765
No 356
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.43 E-value=0.045 Score=54.25 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.|+|.|++|+||||+|+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998875
No 357
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.42 E-value=0.044 Score=57.59 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=24.5
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 160 DKVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 160 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
....+|+|+|+.|+|||||++.+..-..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 3467999999999999999999988763
No 358
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.41 E-value=0.05 Score=55.15 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...+|+|.|+.|+|||||++.+....
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998865
No 359
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.41 E-value=0.43 Score=52.12 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=23.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
..+|+|+|++|+||||++..++..+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~ 123 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYK 123 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999998873
No 360
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.39 E-value=0.046 Score=55.97 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|.|.|++|+||||+|+.+...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999875
No 361
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.38 E-value=0.059 Score=56.36 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=24.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
...+|+|+|++|+||||+++.++....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 457999999999999999999998773
No 362
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.36 E-value=0.043 Score=53.98 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+++|+|+.|+|||||++.+..-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998765
No 363
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.33 E-value=0.046 Score=53.92 Aligned_cols=32 Identities=28% Similarity=0.234 Sum_probs=26.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcE
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNV 195 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~ 195 (929)
..+|+|.|+.|+||||+|+.+...+. ..+++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~--~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK--NNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH--HTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcE
Confidence 46899999999999999999998863 234554
No 364
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.27 E-value=0.043 Score=55.87 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...+|+|+|+.|+||||+++.+...+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999999999875
No 365
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.27 E-value=0.05 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.|+|.|+.|+||||+|+.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999887
No 366
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.27 E-value=0.052 Score=53.65 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=26.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcE
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNV 195 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~ 195 (929)
..+|+|.|+.|+||||+|+.+...+. ..+++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~--~~~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC--AAGHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH--HTTCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--HcCCcE
Confidence 46899999999999999999999873 234554
No 367
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.25 E-value=0.091 Score=50.63 Aligned_cols=37 Identities=16% Similarity=0.100 Sum_probs=27.5
Q ss_pred HHHHHHHhcC-CCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 150 VERIWEDLMG-DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 150 ~~~l~~~l~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+..+..++.+ +....+.|+|++|+||||+|..+++..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4444455543 123479999999999999999999986
No 368
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.25 E-value=0.052 Score=50.64 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...+++|+|+.|.|||||++.++.-.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 44699999999999999999998875
No 369
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.21 E-value=0.029 Score=55.47 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+|+|.|+.|+||||+|+.+...+
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 378999999999999999999887
No 370
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.18 E-value=0.04 Score=54.74 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+++|+|+.|+|||||++.+....
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998854
No 371
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.07 E-value=0.048 Score=54.06 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.|+|.|++|+||||+|+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 372
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.01 E-value=0.059 Score=52.78 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+|.|.|++|+||||.|+.++..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999876
No 373
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=93.01 E-value=0.055 Score=60.72 Aligned_cols=43 Identities=14% Similarity=0.206 Sum_probs=33.1
Q ss_pred cccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 140 TLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 140 ~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.++|+ +..++.+...+..+ .-|.|+|++|+|||+||+.+++..
T Consensus 23 ~ivGq--~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYER--SHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSC--HHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHH--HHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 46787 55666666665544 358899999999999999998865
No 374
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.98 E-value=0.064 Score=54.27 Aligned_cols=26 Identities=19% Similarity=0.136 Sum_probs=23.4
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...+|+|.|++|+||||+|+.+.+.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998865
No 375
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.95 E-value=0.048 Score=54.53 Aligned_cols=25 Identities=24% Similarity=0.419 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...|.|.|++|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998865
No 376
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.95 E-value=0.028 Score=55.71 Aligned_cols=110 Identities=17% Similarity=0.035 Sum_probs=58.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKA 241 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (929)
..++.|+|..|+||||++..+.++... ... .++.+....... ....|++.++.......- .....+...+..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~--~g~-kVli~~~~~d~r---~~~~i~srlG~~~~~~~~--~~~~~i~~~i~~ 83 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEY--ADV-KYLVFKPKIDTR---SIRNIQSRTGTSLPSVEV--ESAPEILNYIMS 83 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH--TTC-CEEEEEECCCGG---GCSSCCCCCCCSSCCEEE--SSTHHHHHHHHS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHh--cCC-EEEEEEeccCch---HHHHHHHhcCCCcccccc--CCHHHHHHHHHH
Confidence 478999999999999999999888732 222 344444332211 112344444433221100 001123333322
Q ss_pred ----cCcEEEEEecCCCc--CCccccccCCCCCCCCcEEEEEeCccc
Q 042574 242 ----KAKFVLILDDMWEA--FPLEEVGIPEPSEENGCKLVITTRSLG 282 (929)
Q Consensus 242 ----~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ilvTtR~~~ 282 (929)
++.-+||+|.+..- +.++.+. .+. ..|..||+|.+..+
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~-~L~--~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVAN-ILA--ENGFVVIISGLDKN 127 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHH-HHH--HTTCEEEEECCSBC
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHH-HHH--hCCCeEEEEecccc
Confidence 33559999999642 1222221 111 13678999988654
No 377
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.89 E-value=0.053 Score=54.03 Aligned_cols=25 Identities=24% Similarity=0.232 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...|.|.|++|+||||+|+.++..+
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999876
No 378
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.88 E-value=0.056 Score=53.60 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+++|+|+.|+|||||++.+....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 4689999999999999999998865
No 379
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.88 E-value=0.053 Score=52.29 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
.+++|+|+.|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998874
No 380
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.82 E-value=0.42 Score=52.84 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=23.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
..+++|+|..|+|||||++.++..+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhh
Confidence 57999999999999999999998763
No 381
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.80 E-value=0.082 Score=55.52 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...+|+|.|+.|+||||+|+.+....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35699999999999999999988766
No 382
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.78 E-value=0.069 Score=51.02 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|+|.|+.|+||||+++.+...+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 383
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.76 E-value=0.048 Score=51.61 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
++++|+|..|+|||||++.+..-+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5899999999999999999988773
No 384
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.75 E-value=0.084 Score=55.17 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=23.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
..+++|+|+.|+||||+++.++....
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999998874
No 385
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.73 E-value=0.069 Score=52.66 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=24.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
...+|.|.|+.|+||||+|+.+...+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457899999999999999999998773
No 386
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.73 E-value=0.067 Score=53.31 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|+|.|++|+||||+|+.+...+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 387
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.68 E-value=0.062 Score=58.93 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=32.9
Q ss_pred ccccccchHHHHHHHHHHhcC--------------CCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMG--------------DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~--------------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..++|. +..++.+..++.. ...+-|.++|++|+||||+|+.++...
T Consensus 15 ~~IvGq--e~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 15 QHIIGQ--ADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp TTCCSC--HHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHhCCH--HHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc
Confidence 457887 4555555444411 124569999999999999999999876
No 388
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.67 E-value=0.068 Score=52.45 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+|+|.|+.|+||||+|+.+...+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998876
No 389
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.65 E-value=0.063 Score=56.56 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=22.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+|+|.|+.|+||||||+.++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999998875
No 390
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.63 E-value=0.058 Score=54.61 Aligned_cols=24 Identities=38% Similarity=0.432 Sum_probs=22.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+|+|+|+.|+||||+++.+....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999876
No 391
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.57 E-value=0.061 Score=52.61 Aligned_cols=25 Identities=28% Similarity=0.203 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|+|.|+.|+||||+++.+...+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998864
No 392
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.56 E-value=0.077 Score=50.33 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=23.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.++++|+|+.|+|||||+..+....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999999876
No 393
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=92.38 E-value=0.15 Score=55.95 Aligned_cols=92 Identities=14% Similarity=0.181 Sum_probs=55.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhc-CCCcEEEEEEECCCCC-HHHHHHHHHHHhcC-------CCCCCccHH---
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKET-NKFNVVIWVTVSQPLD-LIKLQTEIATALKQ-------SLPENEDKV--- 229 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~-------~~~~~~~~~--- 229 (929)
-..++|.|.+|+|||+|+.++++...... +.-+.++++-+++... +.++.+++...-.. ...+.....
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~ 231 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIV 231 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHH
Confidence 45688899999999999999998752111 1124677888877653 45566666543111 011111111
Q ss_pred --HHHHHHHHHHH--hcCcEEEEEecCC
Q 042574 230 --RRAGRLSEMLK--AKAKFVLILDDMW 253 (929)
Q Consensus 230 --~~~~~l~~~l~--~~~~~LlvlDdv~ 253 (929)
..+..+.++++ +++.+|+++||+.
T Consensus 232 ~~~~a~tiAEyfrdd~G~dVLl~~Dslt 259 (469)
T 2c61_A 232 TPRMALTAAEYLAYEHGMHVLVILTDIT 259 (469)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCHH
Confidence 11223445555 5899999999974
No 394
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.37 E-value=0.077 Score=52.86 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.|.|.|++|+||||+|+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 395
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.37 E-value=0.075 Score=52.53 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.|.|.|++|+||||+|+.+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998875
No 396
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.34 E-value=0.076 Score=52.65 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=22.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..|.|.|++|+||||+|+.+...+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 397
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.30 E-value=0.068 Score=54.27 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNR 185 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~ 185 (929)
..+++|+|+.|+|||||++.++..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 468999999999999999998843
No 398
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.29 E-value=0.075 Score=53.46 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+++|+|+.|+|||||++.++.-.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 789999999999999999887753
No 399
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.29 E-value=0.048 Score=54.69 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=16.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHH-HHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEIN-NRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~-~~~ 186 (929)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 654
No 400
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.26 E-value=0.077 Score=55.81 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...+|+|+|+.|+|||||++.+....
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998865
No 401
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.25 E-value=0.074 Score=55.09 Aligned_cols=23 Identities=22% Similarity=0.578 Sum_probs=21.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEIN 183 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~ 183 (929)
...+|+|.|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999998
No 402
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.24 E-value=0.078 Score=52.59 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINN 184 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~ 184 (929)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999865
No 403
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.19 E-value=0.053 Score=56.41 Aligned_cols=26 Identities=27% Similarity=0.403 Sum_probs=20.3
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...+|+|.|+.|+||||+|+.+...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998865
No 404
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.06 E-value=0.16 Score=54.55 Aligned_cols=36 Identities=22% Similarity=0.563 Sum_probs=28.2
Q ss_pred HHHHHHhc--CCCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 151 ERIWEDLM--GDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 151 ~~l~~~l~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+...+. .+...+|+|+|.+|+|||||+..+....
T Consensus 66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444443 3457899999999999999999998876
No 405
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.06 E-value=0.097 Score=52.53 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...|.|.|+.|+||||+|+.+...+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999999876
No 406
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.04 E-value=0.12 Score=55.25 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=23.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
..+++|+|+.|+||||+++.++....
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 57999999999999999999998874
No 407
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.04 E-value=0.26 Score=49.78 Aligned_cols=48 Identities=25% Similarity=0.216 Sum_probs=31.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTE 213 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 213 (929)
..++.|.|.+|+||||+|.+++....... -..++|++... +..++.+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~~v~~~s~E~--~~~~~~~~ 77 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLEE--RARDLRRE 77 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESSS--CHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCceeecccC--CHHHHHHH
Confidence 46899999999999999999765432221 23466665543 34444433
No 408
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.92 E-value=0.068 Score=52.47 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=24.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCC
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKF 193 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f 193 (929)
..+++|+|+.|+|||||++.++.- ....+..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 458999999999999999999876 4443433
No 409
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.89 E-value=0.071 Score=53.51 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
-.+++|+|+.|+|||||++.+..-.
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4689999999999999999887654
No 410
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=91.88 E-value=0.082 Score=54.74 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
-|.|+|++|+||||||+.++...
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 38999999999999999999875
No 411
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.86 E-value=0.094 Score=54.88 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
++|.|+|+.|+||||||+.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998875
No 412
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.85 E-value=0.069 Score=53.18 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+++|+|+.|+|||||++.++.-.
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999887643
No 413
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.77 E-value=0.14 Score=53.96 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=24.1
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
...+|+|+|.+|+||||++..++....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~ 130 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYA 130 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999998874
No 414
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.77 E-value=0.085 Score=54.59 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.++|.|.|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998765
No 415
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.71 E-value=0.29 Score=51.09 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=32.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIA 215 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 215 (929)
..+++|+|++|+|||||++.++...... .-..++|+.... +..++...+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~--~~~~~~~r~~ 84 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEE--SVEETAEDLI 84 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSS--CHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcC--CHHHHHHHHH
Confidence 3689999999999999999998876322 122466665432 3344443333
No 416
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.71 E-value=0.66 Score=52.48 Aligned_cols=51 Identities=10% Similarity=-0.001 Sum_probs=36.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIAT 216 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~ 216 (929)
..++.|.|.+|+||||||.+++...... +-..++|++... +..++...++.
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~--~g~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA--MGKKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT--SCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh--cCCcEEEEeccC--CHHHHHHHHHH
Confidence 4689999999999999999998876321 123577776544 45666665543
No 417
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=91.70 E-value=0.11 Score=60.37 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=35.6
Q ss_pred ccccccchHHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 139 ATLAGKKTKKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 139 ~~~vGr~~~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..++|. +..++.+...+..+ ..+.|+|++|+||||||+.++...
T Consensus 41 ~~i~G~--~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 41 DQVIGQ--EHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHCCSC--HHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ceEECc--hhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 678897 55666666666655 479999999999999999999865
No 418
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.55 E-value=0.38 Score=62.25 Aligned_cols=85 Identities=16% Similarity=0.219 Sum_probs=54.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLP-----ENEDKVRRAGRLS 236 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 236 (929)
.+++.|.|++|+||||||.+++..... .-..++|++.....+... ++.++.+.. ...+..+....+.
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~---~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 469999999999999999999888732 223588888777766432 555554322 1222333333332
Q ss_pred HHHHhcCcEEEEEecCCC
Q 042574 237 EMLKAKAKFVLILDDMWE 254 (929)
Q Consensus 237 ~~l~~~~~~LlvlDdv~~ 254 (929)
....+.+.-++|+|-+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 222345677999999854
No 419
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.51 E-value=0.083 Score=53.10 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+++|+|+.|+|||||++.++.-.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999987754
No 420
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.46 E-value=0.27 Score=53.56 Aligned_cols=92 Identities=17% Similarity=0.231 Sum_probs=54.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhc-------CCCc-EEEEEEECCCCC-HHHHHHHHHHH--hcC-----CCCCC
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKET-------NKFN-VVIWVTVSQPLD-LIKLQTEIATA--LKQ-----SLPEN 225 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------~~f~-~~~wv~~s~~~~-~~~~~~~i~~~--l~~-----~~~~~ 225 (929)
-..++|.|.+|+|||+|+.++++...... .+=+ .++++-+++... +.++.+++... +.. ...+.
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 35688999999999999999988752100 0111 577787877653 44555554432 110 01111
Q ss_pred ccHHH-----HHHHHHHHHH--hcCcEEEEEecCC
Q 042574 226 EDKVR-----RAGRLSEMLK--AKAKFVLILDDMW 253 (929)
Q Consensus 226 ~~~~~-----~~~~l~~~l~--~~~~~LlvlDdv~ 253 (929)
..... .+..+.+++. .++.+|+++||+.
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 11111 1234456665 3789999999984
No 421
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.46 E-value=0.18 Score=52.96 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=32.1
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCC
Q 042574 160 DKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL 205 (929)
Q Consensus 160 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~ 205 (929)
...++|+|+|-||+||||+|..++..+.. . -..+.-|+.....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~-~--G~~VlliD~D~~~ 81 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI-L--GKRVLQIGCDPKH 81 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH-T--TCCEEEEEESSSC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHH-C--CCeEEEEeCCCCC
Confidence 45789999999999999999999998843 2 2246667765443
No 422
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.43 E-value=0.084 Score=55.39 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.++|.|+|+.|+||||||..++..+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 3689999999999999999998865
No 423
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.35 E-value=0.1 Score=52.93 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNR 185 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~ 185 (929)
-.+++|+|+.|+|||||++.++.-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999998874
No 424
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=91.33 E-value=0.23 Score=52.87 Aligned_cols=50 Identities=24% Similarity=0.317 Sum_probs=34.8
Q ss_pred hcCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCH
Q 042574 157 LMGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDL 207 (929)
Q Consensus 157 l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 207 (929)
+.+...+++.+.|.||+||||+|..++...... ..-..+.-|+.....++
T Consensus 13 l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~-~~g~~vllid~D~~~~l 62 (348)
T 3io3_A 13 VQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALA-QPNEQFLLISTDPAHNL 62 (348)
T ss_dssp HTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHH-CTTSCEEEEECCSSCHH
T ss_pred hcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHh-cCCCeEEEEECCCCCCh
Confidence 334557899999999999999999999887310 22334666766544443
No 425
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.31 E-value=0.087 Score=54.14 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+++|+|+.|+|||||++.+..-.
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3689999999999999999887643
No 426
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.31 E-value=0.58 Score=52.00 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=36.9
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCH-HHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDL-IKLQTEI 214 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~-~~~~~~i 214 (929)
.-..++|.|..|+|||+|+.++++.. +-+.++++-+++.... .++.+++
T Consensus 226 kGqr~~I~g~~g~GKT~L~~~ia~~~-----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 226 KGGTAAIPGPAGSGKTVTQHQLAKWS-----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp TTCEEEECSCCSHHHHHHHHHHHHHS-----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred cCCeEEeecCCCCCHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHHH
Confidence 34679999999999999999987642 3467889999987654 4454443
No 427
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.29 E-value=0.12 Score=53.39 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.++|.|.|+.|+||||||..++...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 5689999999999999999998865
No 428
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.28 E-value=0.088 Score=53.79 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+++|+|+.|+|||||++.++.-.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999887654
No 429
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.24 E-value=0.72 Score=50.98 Aligned_cols=49 Identities=10% Similarity=0.027 Sum_probs=34.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIA 215 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~ 215 (929)
..++.|.|.+|+||||+|.+++...... -..++|++.... ..++...++
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlEms--~~ql~~R~~ 245 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLEMG--KKENIKRLI 245 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSSSC--TTHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECCCC--HHHHHHHHH
Confidence 4689999999999999999998887432 245777765543 334444433
No 430
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.22 E-value=0.078 Score=52.24 Aligned_cols=24 Identities=42% Similarity=0.666 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.+++|+|+.|+|||||++.++.-.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999987654
No 431
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.19 E-value=0.093 Score=52.86 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+++|+|+.|+|||||++.++.-.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999887654
No 432
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.14 E-value=0.11 Score=53.28 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNR 185 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~ 185 (929)
..+++|+|+.|+|||||++.++.-
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999998874
No 433
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.14 E-value=0.093 Score=53.73 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+++|+|+.|+|||||++.+..-.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4689999999999999999987754
No 434
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.12 E-value=0.094 Score=53.52 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+++|+|+.|+|||||++.++.-.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 4689999999999999999887654
No 435
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.11 E-value=0.11 Score=50.07 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.-.|+|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 5689999999999999999988753
No 436
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.11 E-value=0.095 Score=53.43 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+++|+|+.|+|||||++.++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999987654
No 437
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.11 E-value=0.29 Score=48.82 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=27.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEE
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWV 199 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv 199 (929)
...|.|.|+.|+||||+++.+...+.. .++..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~--~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ--NGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH--TTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--cCCCeeeee
Confidence 468999999999999999999998742 345534433
No 438
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.08 E-value=0.097 Score=52.30 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
-.+++|+|+.|+|||||++.++.-.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999988754
No 439
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.04 E-value=0.14 Score=51.38 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|+|.|+.|+||||+++.+...+
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999998865
No 440
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.02 E-value=0.098 Score=52.90 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+++|+|+.|+|||||++.++.-.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999987754
No 441
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.02 E-value=0.1 Score=52.68 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
-.+++|+|+.|+|||||++.++.-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999987654
No 442
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.00 E-value=0.24 Score=48.64 Aligned_cols=37 Identities=22% Similarity=0.199 Sum_probs=26.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECC
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQ 203 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~ 203 (929)
.|.+.|.||+||||+|..++..... ..++ +..+.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~--~G~~-V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR--QGVR-VMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH--TTCC-EEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH--CCCC-EEEEEeCC
Confidence 4888999999999999999988742 2333 44455444
No 443
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.96 E-value=0.14 Score=51.08 Aligned_cols=25 Identities=40% Similarity=0.529 Sum_probs=23.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+|+|.|+.|+||||+++.+...+
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999987
No 444
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.94 E-value=0.14 Score=52.22 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..++.+.|.||+||||++..++...
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999876
No 445
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.94 E-value=0.12 Score=53.73 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...+++|+|+.|.|||||++.+..-.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 45789999999999999999998765
No 446
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.91 E-value=0.36 Score=61.62 Aligned_cols=85 Identities=18% Similarity=0.234 Sum_probs=54.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCC-----CCccHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLP-----ENEDKVRRAGRLS 236 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 236 (929)
.+++.|.|.+|+||||||.+++...... -..++|++.....+.. .++.++.+.. ...+..+....+.
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~~~~---G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT---TCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh---CCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 4699999999999999999998876322 2458899887776653 2455554321 1122233333333
Q ss_pred HHHHhcCcEEEEEecCCC
Q 042574 237 EMLKAKAKFVLILDDMWE 254 (929)
Q Consensus 237 ~~l~~~~~~LlvlDdv~~ 254 (929)
....+.+.-++|+|-+..
T Consensus 455 ~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHhcCCCEEEECCHHH
Confidence 333345667999999864
No 447
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.91 E-value=0.1 Score=53.05 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+++|+|+.|+|||||++.++.-.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999987654
No 448
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.91 E-value=0.26 Score=50.58 Aligned_cols=39 Identities=23% Similarity=0.492 Sum_probs=29.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCC
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 204 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 204 (929)
++|+|.|.||+||||+|..++..+.. . -..+.-|+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~-~--G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHA-M--GKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHT-T--TCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHH-C--CCcEEEEcCCCC
Confidence 57888999999999999999998842 2 234666766543
No 449
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.90 E-value=0.11 Score=49.72 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
+.|.|.|+.|+||||||.++..+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 679999999999999999987754
No 450
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.89 E-value=0.14 Score=52.14 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...+++|+|+.|+|||||++.+....
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 44699999999999999999998876
No 451
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.86 E-value=0.34 Score=47.53 Aligned_cols=25 Identities=32% Similarity=0.407 Sum_probs=23.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
..|.|-|+.|+||||+++.+...+.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999874
No 452
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.82 E-value=0.13 Score=53.94 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNR 185 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~ 185 (929)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 453
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=90.79 E-value=0.27 Score=52.00 Aligned_cols=47 Identities=28% Similarity=0.286 Sum_probs=34.4
Q ss_pred cCCCeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCH
Q 042574 158 MGDKVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDL 207 (929)
Q Consensus 158 ~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 207 (929)
.+...+++.+.|.||+||||+|..++..... ....+.-|+.....++
T Consensus 12 ~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~---~g~~vllid~D~~~~l 58 (334)
T 3iqw_A 12 DQRSLRWIFVGGKGGVGKTTTSCSLAIQLAK---VRRSVLLLSTDPAHNL 58 (334)
T ss_dssp HCTTCCEEEEECSTTSSHHHHHHHHHHHHTT---SSSCEEEEECCSSCHH
T ss_pred cCCCeEEEEEeCCCCccHHHHHHHHHHHHHh---CCCcEEEEECCCCCCh
Confidence 3455688999999999999999999988732 2345677776654443
No 454
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.74 E-value=0.12 Score=56.99 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=23.6
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 160 DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 160 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
....+|.|+|++|+||||+|+.+..+.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346899999999999999999988764
No 455
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.72 E-value=0.11 Score=53.05 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+++|+|+.|+|||||++.+..-.
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3689999999999999999987653
No 456
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.68 E-value=0.11 Score=52.54 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+++|+|+.|+|||||++.++.-.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3589999999999999999987754
No 457
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.67 E-value=0.11 Score=53.36 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+++|+|+.|+|||||++.++.-.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999987754
No 458
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.50 E-value=0.12 Score=53.05 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+++|+|+.|+|||||++.++.-.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3689999999999999999987653
No 459
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.49 E-value=0.12 Score=52.55 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+++|+|+.|+|||||++.++.-.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999987754
No 460
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.46 E-value=0.15 Score=49.59 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNR 185 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~ 185 (929)
.-.|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999998875
No 461
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.44 E-value=0.16 Score=54.70 Aligned_cols=24 Identities=21% Similarity=0.465 Sum_probs=22.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
++|+|.|+.|+||||||..++...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999999876
No 462
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.44 E-value=0.12 Score=53.34 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
-.+++|+|+.|+|||||++.++.-.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3689999999999999999887754
No 463
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.35 E-value=0.13 Score=53.15 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
-.++.|+|++|+||||||..++...
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998765
No 464
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.32 E-value=0.17 Score=46.91 Aligned_cols=23 Identities=17% Similarity=0.460 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNR 185 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~ 185 (929)
+.|.|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998764
No 465
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.30 E-value=0.34 Score=53.36 Aligned_cols=87 Identities=15% Similarity=0.184 Sum_probs=52.2
Q ss_pred eeEEEEEcCCCChHHHHHH-HHHHHHhhhcCCCc-EEEEEEECCCCC-HHHHHHHHHHHhcC-------CCCCCccHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMK-EINNRLQKETNKFN-VVIWVTVSQPLD-LIKLQTEIATALKQ-------SLPENEDKVRR 231 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~-~v~~~~~~~~~~f~-~~~wv~~s~~~~-~~~~~~~i~~~l~~-------~~~~~~~~~~~ 231 (929)
...++|.|.+|+|||+||. ++.+.. .-+ .++++-+++... +.++.+.+...-.. ...++......
T Consensus 175 GQR~~I~g~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~ 249 (515)
T 2r9v_A 175 GQRELIIGDRQTGKTAIAIDTIINQK-----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQY 249 (515)
T ss_dssp TCBEEEEEETTSSHHHHHHHHHHTTT-----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHH
T ss_pred CCEEEEEcCCCCCccHHHHHHHHHhh-----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHH
Confidence 4579999999999999964 666643 244 357888888754 44555555542111 11111111111
Q ss_pred -----HHHHHHHHH-hcCcEEEEEecCC
Q 042574 232 -----AGRLSEMLK-AKAKFVLILDDMW 253 (929)
Q Consensus 232 -----~~~l~~~l~-~~~~~LlvlDdv~ 253 (929)
+..+.++++ +++.+|+++||+.
T Consensus 250 ~a~~~a~tiAEyfrd~G~dVLli~DslT 277 (515)
T 2r9v_A 250 IAPYAGCAMGEYFAYSGRDALVVYDDLS 277 (515)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEETHH
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEeccHH
Confidence 123344444 5789999999985
No 466
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.25 E-value=0.16 Score=47.51 Aligned_cols=23 Identities=26% Similarity=0.500 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNR 185 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~ 185 (929)
..|+|+|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998763
No 467
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=90.25 E-value=0.45 Score=46.74 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=23.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
...|.|.|+.|+||||+++.+...+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999873
No 468
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.24 E-value=0.16 Score=54.66 Aligned_cols=27 Identities=22% Similarity=0.008 Sum_probs=23.5
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 160 DKVTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 160 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
....+++|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345799999999999999999999754
No 469
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=90.17 E-value=1 Score=49.53 Aligned_cols=90 Identities=14% Similarity=0.199 Sum_probs=52.5
Q ss_pred CeeEEEEEcCCCChHHHHH-HHHHHHHhhhcCCCcEEEEEEECCCCC-HHHHHHHHHHHhcCC-------CCCCccHHH-
Q 042574 161 KVTKIGVWGMGGIGKTTIM-KEINNRLQKETNKFNVVIWVTVSQPLD-LIKLQTEIATALKQS-------LPENEDKVR- 230 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~~- 230 (929)
.-..++|.|..|+|||+|| ..+.+.. ..-..++++-+++... +.++.+++...-... ..++.....
T Consensus 161 rGQR~~Ifg~~g~GKT~l~l~~I~n~~----~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~ 236 (513)
T 3oaa_A 161 RGQRELIIGDRQTGKTALAIDAIINQR----DSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQY 236 (513)
T ss_dssp TTCBCEEEESSSSSHHHHHHHHHHTTS----SSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHH
T ss_pred cCCEEEeecCCCCCcchHHHHHHHhhc----cCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHH
Confidence 3457899999999999996 4566532 2222467888888754 455556554431111 111111111
Q ss_pred ----HHHHHHHHHH-hcCcEEEEEecCCC
Q 042574 231 ----RAGRLSEMLK-AKAKFVLILDDMWE 254 (929)
Q Consensus 231 ----~~~~l~~~l~-~~~~~LlvlDdv~~ 254 (929)
.+..+.++++ +++.+|+++||+..
T Consensus 237 ~a~~~a~tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 237 LAPYAGCAMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 1122334443 57899999999853
No 470
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=90.16 E-value=0.26 Score=58.31 Aligned_cols=71 Identities=20% Similarity=0.254 Sum_probs=44.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPENEDKVRRAGRLSEMLKA 241 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 241 (929)
.+-|.++|++|+|||.+|+++++... .. ++.++ ..++ + ..+-.+ .+..+..+...-++
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~---~~-----f~~v~----~~~l----~----s~~vGe--se~~vr~lF~~Ar~ 568 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQ---AN-----FISIK----GPEL----L----TMWFGE--SEANVREIFDKARQ 568 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTT---CE-----EEECC----HHHH----H----TTTCSS--CHHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCchHHHHHHHHHhC---Cc-----eEEec----cchh----h----ccccch--HHHHHHHHHHHHHH
Confidence 45688999999999999999999762 11 22222 1111 1 111111 23344555555555
Q ss_pred cCcEEEEEecCCC
Q 042574 242 KAKFVLILDDMWE 254 (929)
Q Consensus 242 ~~~~LlvlDdv~~ 254 (929)
..+.+|+||+++.
T Consensus 569 ~~P~IifiDEiDs 581 (806)
T 3cf2_A 569 AAPCVLFFDELDS 581 (806)
T ss_dssp TCSEEEECSCGGG
T ss_pred cCCceeechhhhH
Confidence 6799999999964
No 471
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.10 E-value=0.47 Score=60.59 Aligned_cols=84 Identities=17% Similarity=0.219 Sum_probs=58.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHHHHHHHHHHhcCCCCC-----CccHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIKLQTEIATALKQSLPE-----NEDKVRRAGRLS 236 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 236 (929)
-++|-|+|+.|+||||||.++...... .-...+|+.+....+..- ++.++.+... ....++....+.
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~---~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 479999999999999999999877632 235578898877777653 6676665421 222333334444
Q ss_pred HHHHhcCcEEEEEecCC
Q 042574 237 EMLKAKAKFVLILDDMW 253 (929)
Q Consensus 237 ~~l~~~~~~LlvlDdv~ 253 (929)
..++.+..-++|+|-|-
T Consensus 1503 ~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHTCCSEEEESCST
T ss_pred HHHHcCCCCEEEEccHH
Confidence 44556778899999984
No 472
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.96 E-value=0.19 Score=49.66 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
-.++|.|++|+||||+|+.+...+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 473
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=89.93 E-value=0.36 Score=48.76 Aligned_cols=42 Identities=24% Similarity=0.331 Sum_probs=31.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCHHH
Q 042574 165 IGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDLIK 209 (929)
Q Consensus 165 v~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~~~ 209 (929)
|+|.|.||+||||+|..++..+.. . -..+.-|+.....+...
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~-~--g~~VlliD~D~~~~l~~ 44 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMAS-D--YDKIYAVDGDPDSCLGQ 44 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTT-T--CSCEEEEEECTTSCHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH-C--CCeEEEEeCCCCcChHH
Confidence 667999999999999999998842 2 24577777766555444
No 474
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.91 E-value=0.16 Score=52.02 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999865
No 475
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.77 E-value=0.14 Score=56.24 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=23.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
..+|+|+|.+|+||||+|..++....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999998874
No 476
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=89.69 E-value=0.51 Score=52.07 Aligned_cols=94 Identities=18% Similarity=0.245 Sum_probs=54.0
Q ss_pred CeeEEEEEcCCCChHHHHH-HHHHHHHhhh---cCCCc-EEEEEEECCCCC-HHHHHHHHHHHhcC-------CCCCCcc
Q 042574 161 KVTKIGVWGMGGIGKTTIM-KEINNRLQKE---TNKFN-VVIWVTVSQPLD-LIKLQTEIATALKQ-------SLPENED 227 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~---~~~f~-~~~wv~~s~~~~-~~~~~~~i~~~l~~-------~~~~~~~ 227 (929)
.-..++|.|..|+|||+|| .++.+..... .++-+ .++++-+++... +.++.+.+...-.. ...+...
T Consensus 161 rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~ 240 (510)
T 2ck3_A 161 RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTIVVSATASDAA 240 (510)
T ss_dssp TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCGGGEEEEEECTTSCH
T ss_pred cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCcccceEEEECCCCCH
Confidence 3457999999999999995 4677765210 01233 477888888754 44555555442111 1111111
Q ss_pred HHHH-----HHHHHHHHH-hcCcEEEEEecCCC
Q 042574 228 KVRR-----AGRLSEMLK-AKAKFVLILDDMWE 254 (929)
Q Consensus 228 ~~~~-----~~~l~~~l~-~~~~~LlvlDdv~~ 254 (929)
.... +..+.+++. .++.+|+++||+..
T Consensus 241 ~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr 273 (510)
T 2ck3_A 241 PLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSK 273 (510)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHH
Confidence 1111 123334443 57899999999853
No 477
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=89.69 E-value=0.2 Score=50.48 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
...|+|.|..|+||||+++.+...+
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3679999999999999999999876
No 478
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.64 E-value=0.15 Score=52.03 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNR 185 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~ 185 (929)
-.+++|+|+.|+|||||++.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999988663
No 479
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.62 E-value=0.16 Score=48.61 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNR 185 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~ 185 (929)
.|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988763
No 480
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.58 E-value=0.13 Score=51.40 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.8
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNR 185 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~ 185 (929)
...+|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3579999999999999999988764
No 481
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.56 E-value=0.43 Score=47.07 Aligned_cols=28 Identities=29% Similarity=0.253 Sum_probs=24.9
Q ss_pred CCeeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 160 DKVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 160 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
.....|.|.|+.|+||||+++.+.+.+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467899999999999999999999874
No 482
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=89.52 E-value=0.31 Score=50.57 Aligned_cols=39 Identities=26% Similarity=0.423 Sum_probs=29.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCC
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQP 204 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~ 204 (929)
++|+|.|.||+||||+|..++..+.. . -..+.-|+....
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~-~--G~rVlliD~D~q 41 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAE-M--GKKVMIVGCDPK 41 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHH-T--TCCEEEEEECSS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHH-C--CCeEEEEecCCC
Confidence 67888999999999999999998743 2 224666666543
No 483
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.51 E-value=0.15 Score=53.21 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+++|+|+.|.|||||++.+..-.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 4689999999999999999887644
No 484
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=89.38 E-value=0.44 Score=48.12 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCC-C-eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 147 KKVVERIWEDLMGD-K-VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 147 ~~~~~~l~~~l~~~-~-~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.....-+..++... . ..-|.++|++|+|||.+|..+++..
T Consensus 87 ~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 87 QYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 33445567777654 2 4579999999999999999998863
No 485
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=89.35 E-value=0.23 Score=47.63 Aligned_cols=24 Identities=21% Similarity=-0.013 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
.++.|+|+.|+||||++.+++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999998777766
No 486
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.25 E-value=0.18 Score=53.60 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
-.+++|+|+.|+|||||.+.++.-.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3689999999999999999988754
No 487
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.22 E-value=0.2 Score=46.60 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHH
Q 042574 164 KIGVWGMGGIGKTTIMKEINNR 185 (929)
Q Consensus 164 vv~I~G~gGiGKTtLa~~v~~~ 185 (929)
.|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999998765
No 488
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.21 E-value=0.39 Score=46.09 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNR 185 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~ 185 (929)
...|+|+|.+|+|||||+..+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999988764
No 489
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.15 E-value=0.21 Score=46.66 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNR 185 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~ 185 (929)
.-.|.|+|.+|+|||||+..+.+.
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999998764
No 490
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.14 E-value=0.2 Score=47.99 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNR 185 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~ 185 (929)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999998764
No 491
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.03 E-value=0.2 Score=53.35 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
-.+++|+|+.|+|||||++.+..-.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 4689999999999999999887754
No 492
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.00 E-value=0.17 Score=52.39 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
..+++|+|+.|+|||||++.++.-.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4689999999999999999987754
No 493
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=88.93 E-value=0.57 Score=53.25 Aligned_cols=26 Identities=23% Similarity=0.205 Sum_probs=23.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
-.+++|.|.+|+|||||++.++....
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999988763
No 494
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=88.92 E-value=0.37 Score=53.81 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhcCCCeeEEEEEcCCCChHHHHHHHHHHHHh
Q 042574 147 KKVVERIWEDLMGDKVTKIGVWGMGGIGKTTIMKEINNRLQ 187 (929)
Q Consensus 147 ~~~~~~l~~~l~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 187 (929)
.+.+..+...+.+++ +.+.|.|++|+||||++..+...+.
T Consensus 31 ~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 31 KNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp HHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 455666666766554 4899999999999999999998874
No 495
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=88.85 E-value=0.21 Score=53.13 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHHHH
Q 042574 162 VTKIGVWGMGGIGKTTIMKEINNRL 186 (929)
Q Consensus 162 ~~vv~I~G~gGiGKTtLa~~v~~~~ 186 (929)
-.+++|+|+.|+|||||.+.++.-.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3689999999999999999987653
No 496
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=88.82 E-value=0.33 Score=47.28 Aligned_cols=42 Identities=26% Similarity=0.309 Sum_probs=30.3
Q ss_pred eEEEEE-cCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCCCH
Q 042574 163 TKIGVW-GMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPLDL 207 (929)
Q Consensus 163 ~vv~I~-G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~~~ 207 (929)
++|+|+ +.||+||||+|..++..+.. . -..+.-++.....+.
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~-~--g~~vlliD~D~~~~~ 44 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSR-S--GYNIAVVDTDPQMSL 44 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHH-T--TCCEEEEECCTTCHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHH-C--CCeEEEEECCCCCCH
Confidence 578887 67999999999999998843 2 234677776654443
No 497
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=88.78 E-value=1 Score=49.66 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=52.5
Q ss_pred CeeEEEEEcCCCChHHHHHH-HHHHHHhhhcCCCc-EEEEEEECCCCC-HHHHHHHHHHHhcCC-------CCCCccHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMK-EINNRLQKETNKFN-VVIWVTVSQPLD-LIKLQTEIATALKQS-------LPENEDKVR 230 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~-~v~~~~~~~~~~f~-~~~wv~~s~~~~-~~~~~~~i~~~l~~~-------~~~~~~~~~ 230 (929)
....++|.|.+|+|||+||. ++.+.. .-+ .++++-+++... +.++.+.+...-... ..++.....
T Consensus 161 rGQR~~Ifg~~g~GKT~Lal~~I~~~~-----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r 235 (502)
T 2qe7_A 161 RGQRELIIGDRQTGKTTIAIDTIINQK-----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLL 235 (502)
T ss_dssp TTCBCEEEECSSSCHHHHHHHHHHGGG-----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHH
T ss_pred cCCEEEEECCCCCCchHHHHHHHHHhh-----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHH
Confidence 34579999999999999964 666653 234 357888887754 445555555421111 111111111
Q ss_pred H-----HHHHHHHHH-hcCcEEEEEecCC
Q 042574 231 R-----AGRLSEMLK-AKAKFVLILDDMW 253 (929)
Q Consensus 231 ~-----~~~l~~~l~-~~~~~LlvlDdv~ 253 (929)
. +..+.++++ .++.+|+++||+.
T Consensus 236 ~~a~~~a~tiAEyfrd~G~dVLl~~Dslt 264 (502)
T 2qe7_A 236 YLAPYAGCAMGEYFMYKGKHALVVYDDLS 264 (502)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEEecHH
Confidence 1 123344443 5789999999984
No 498
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.77 E-value=0.32 Score=46.78 Aligned_cols=36 Identities=8% Similarity=0.203 Sum_probs=18.9
Q ss_pred ccCCCCEEEccCCCCc-----cccccccCCCCCCEEEccCC
Q 042574 590 KLLALQYLDLERTWIE-----EVPEGMEMLENLSHLYLSSP 625 (929)
Q Consensus 590 ~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~~ 625 (929)
.-+.|++|+|++|.|. .+-..+..-+.|++|++++|
T Consensus 96 ~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 96 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred cCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 3345666666666555 12223344455666666543
No 499
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=88.73 E-value=1.1 Score=50.07 Aligned_cols=48 Identities=23% Similarity=0.300 Sum_probs=35.6
Q ss_pred CeeEEEEEcCCCChHHHHHHHHHHHHhhhcCCCcEEEEEEECCCC-CHHHHHHH
Q 042574 161 KVTKIGVWGMGGIGKTTIMKEINNRLQKETNKFNVVIWVTVSQPL-DLIKLQTE 213 (929)
Q Consensus 161 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~ 213 (929)
.-..++|.|..|+|||+|+.++.+.. +-+.++++-+++.. .+.++.++
T Consensus 231 rGqr~~Ifgg~g~GKT~L~~~ia~~~-----~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 231 KGGAAAVPGPFGAGKTVVQHQIAKWS-----DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHS-----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred CCCEEeeecCCCccHHHHHHHHHhcc-----CCCEEEEEEecccHHHHHHHHHH
Confidence 34679999999999999999988753 34678888888764 33344443
No 500
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.71 E-value=0.23 Score=47.69 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHH
Q 042574 163 TKIGVWGMGGIGKTTIMKEINNR 185 (929)
Q Consensus 163 ~vv~I~G~gGiGKTtLa~~v~~~ 185 (929)
-.|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999998865
Done!