Query 042576
Match_columns 313
No_of_seqs 203 out of 555
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 12:54:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042576.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042576hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lzd_A DPH2; diphthamide biosy 100.0 2E-73 6.8E-78 553.6 26.3 231 1-241 117-350 (378)
2 3kke_A LACI family transcripti 87.8 9.7 0.00033 33.6 13.2 164 38-211 16-203 (303)
3 3gv0_A Transcriptional regulat 87.2 14 0.00049 32.1 13.9 164 38-211 9-194 (288)
4 3hcw_A Maltose operon transcri 87.0 15 0.00052 32.2 14.7 151 38-197 8-174 (295)
5 3rot_A ABC sugar transporter, 86.2 9 0.00031 33.6 12.0 168 39-211 5-194 (297)
6 3cs3_A Sugar-binding transcrip 86.0 16 0.00055 31.5 18.6 158 38-211 9-183 (277)
7 3g85_A Transcriptional regulat 84.6 9.2 0.00031 33.2 11.2 165 38-211 12-194 (289)
8 1byk_A Protein (trehalose oper 84.1 3 0.0001 35.8 7.6 78 153-231 2-84 (255)
9 8abp_A L-arabinose-binding pro 82.6 7.1 0.00024 34.2 9.6 171 39-214 4-204 (306)
10 3hs3_A Ribose operon repressor 82.3 3.7 0.00013 35.9 7.6 76 152-230 9-89 (277)
11 3huu_A Transcription regulator 82.1 23 0.00079 31.0 12.9 164 38-211 23-208 (305)
12 2h3h_A Sugar ABC transporter, 81.6 13 0.00045 32.8 11.1 161 48-212 15-189 (313)
13 3brs_A Periplasmic binding pro 81.4 13 0.00044 32.2 10.8 170 38-211 6-196 (289)
14 3lft_A Uncharacterized protein 80.7 24 0.00083 30.9 12.5 163 39-211 4-192 (295)
15 3k4h_A Putative transcriptiona 80.0 28 0.00097 29.9 14.1 167 38-211 9-198 (292)
16 3k9c_A Transcriptional regulat 79.8 30 0.001 30.1 13.1 162 38-211 13-191 (289)
17 3g1w_A Sugar ABC transporter; 79.5 15 0.00053 32.0 10.7 170 37-212 4-194 (305)
18 3ixl_A Amdase, arylmalonate de 78.7 6.6 0.00023 34.9 8.0 82 149-237 114-216 (240)
19 2fz5_A Flavodoxin; alpha/beta 78.6 7.4 0.00025 30.2 7.5 55 156-216 2-56 (137)
20 3d8u_A PURR transcriptional re 78.6 30 0.001 29.5 12.2 164 38-211 4-187 (275)
21 3e61_A Putative transcriptiona 78.4 14 0.00048 31.7 10.0 162 38-211 9-183 (277)
22 3o74_A Fructose transport syst 78.2 26 0.00087 29.8 11.5 151 39-198 4-165 (272)
23 3qk7_A Transcriptional regulat 78.1 11 0.00038 33.0 9.3 165 38-211 7-193 (294)
24 2dri_A D-ribose-binding protei 76.6 24 0.00082 30.3 11.0 158 48-210 16-187 (271)
25 3kke_A LACI family transcripti 76.5 4.6 0.00016 35.8 6.3 64 152-216 14-82 (303)
26 3c3k_A Alanine racemase; struc 76.3 34 0.0012 29.6 12.0 140 38-187 9-158 (285)
27 3egc_A Putative ribose operon 76.1 6.1 0.00021 34.5 7.0 63 152-215 7-74 (291)
28 3f6r_A Flavodoxin; FMN binding 75.9 3.7 0.00013 32.8 5.0 58 154-216 2-59 (148)
29 5nul_A Flavodoxin; electron tr 75.8 4.5 0.00016 31.8 5.5 55 156-216 1-55 (138)
30 3gyb_A Transcriptional regulat 75.2 20 0.00069 30.8 10.1 159 38-211 6-182 (280)
31 3jvd_A Transcriptional regulat 75.0 5.8 0.0002 35.9 6.7 73 152-230 63-140 (333)
32 1f4p_A Flavodoxin; electron tr 73.6 4.4 0.00015 32.2 4.9 56 155-216 2-58 (147)
33 3o74_A Fructose transport syst 73.5 4.8 0.00017 34.5 5.5 62 153-215 2-68 (272)
34 2xed_A Putative maleate isomer 72.9 14 0.00047 33.4 8.7 81 152-237 145-244 (273)
35 3dbi_A Sugar-binding transcrip 72.4 52 0.0018 29.2 14.1 164 38-211 62-248 (338)
36 3e61_A Putative transcriptiona 72.2 2.6 8.8E-05 36.6 3.4 61 152-213 7-72 (277)
37 3trh_A Phosphoribosylaminoimid 72.1 11 0.00039 32.3 7.3 59 152-213 5-69 (169)
38 1jye_A Lactose operon represso 71.6 32 0.0011 31.0 10.9 165 38-211 62-244 (349)
39 2iks_A DNA-binding transcripti 71.5 50 0.0017 28.5 13.0 152 38-197 21-182 (293)
40 3egc_A Putative ribose operon 71.4 34 0.0012 29.5 10.7 166 38-212 9-193 (291)
41 3l6u_A ABC-type sugar transpor 70.8 50 0.0017 28.3 13.4 170 38-211 9-201 (293)
42 3g1w_A Sugar ABC transporter; 70.7 5.6 0.00019 34.9 5.4 65 152-216 3-72 (305)
43 3ors_A N5-carboxyaminoimidazol 70.7 13 0.00043 31.9 7.2 59 152-213 2-66 (163)
44 3hs3_A Ribose operon repressor 70.7 22 0.00076 30.7 9.3 158 38-211 11-184 (277)
45 3ksm_A ABC-type sugar transpor 69.8 50 0.0017 27.9 12.5 160 47-210 14-192 (276)
46 2h0a_A TTHA0807, transcription 69.7 51 0.0018 28.0 13.4 154 47-210 13-185 (276)
47 2fep_A Catabolite control prot 69.6 43 0.0015 29.0 11.0 164 38-211 17-201 (289)
48 3l6u_A ABC-type sugar transpor 69.0 5.5 0.00019 34.7 4.9 64 152-216 7-75 (293)
49 3brs_A Periplasmic binding pro 68.8 7.2 0.00025 33.8 5.6 65 152-216 4-76 (289)
50 4grd_A N5-CAIR mutase, phospho 68.7 14 0.00046 31.9 7.1 59 152-213 11-75 (173)
51 3tb6_A Arabinose metabolism tr 67.5 13 0.00044 32.2 7.0 61 153-214 15-80 (298)
52 3lp6_A Phosphoribosylaminoimid 67.3 14 0.00048 31.9 6.9 57 152-212 6-69 (174)
53 3hr4_A Nitric oxide synthase, 67.2 21 0.00071 31.6 8.3 72 135-212 22-93 (219)
54 3miz_A Putative transcriptiona 66.6 9.8 0.00034 33.4 6.1 63 152-215 12-80 (301)
55 3gyb_A Transcriptional regulat 66.3 15 0.00051 31.6 7.1 62 152-216 4-70 (280)
56 3m9w_A D-xylose-binding peripl 66.1 12 0.00042 33.0 6.7 64 153-217 2-70 (313)
57 3h75_A Periplasmic sugar-bindi 65.9 37 0.0013 30.4 10.0 160 48-211 19-211 (350)
58 3fni_A Putative diflavin flavo 65.7 17 0.00057 29.9 7.0 61 153-216 4-66 (159)
59 3uug_A Multiple sugar-binding 65.1 16 0.00053 32.4 7.2 63 152-215 2-69 (330)
60 2qh8_A Uncharacterized protein 64.6 47 0.0016 29.1 10.3 166 38-211 9-199 (302)
61 3kuu_A Phosphoribosylaminoimid 64.1 18 0.00062 31.2 7.0 56 154-212 13-74 (174)
62 3oow_A Phosphoribosylaminoimid 64.0 20 0.00068 30.7 7.2 55 155-212 7-67 (166)
63 3cs3_A Sugar-binding transcrip 63.9 12 0.00042 32.3 6.1 61 152-215 7-67 (277)
64 3bbl_A Regulatory protein of L 63.7 72 0.0024 27.5 14.0 141 48-196 23-170 (287)
65 4b4k_A N5-carboxyaminoimidazol 63.5 19 0.00066 31.2 7.0 56 154-212 23-84 (181)
66 3clk_A Transcription regulator 63.5 38 0.0013 29.3 9.3 164 38-211 9-191 (290)
67 3e3m_A Transcriptional regulat 62.7 86 0.003 28.1 14.9 163 39-211 72-256 (355)
68 3o1i_D Periplasmic protein TOR 62.3 53 0.0018 28.3 10.0 164 38-209 6-198 (304)
69 1u11_A PURE (N5-carboxyaminoim 62.1 16 0.00056 31.7 6.4 63 147-213 16-84 (182)
70 2rjo_A Twin-arginine transloca 61.6 68 0.0023 28.3 10.9 167 38-211 6-203 (332)
71 2iks_A DNA-binding transcripti 60.4 21 0.0007 31.1 7.0 63 152-215 19-86 (293)
72 3m9w_A D-xylose-binding peripl 60.4 70 0.0024 27.9 10.6 169 39-212 4-195 (313)
73 2fep_A Catabolite control prot 59.9 6.8 0.00023 34.3 3.7 62 152-214 15-81 (289)
74 3miz_A Putative transcriptiona 59.7 22 0.00076 31.0 7.1 139 38-185 14-163 (301)
75 1tjy_A Sugar transport protein 59.1 78 0.0027 27.9 10.8 169 38-211 4-195 (316)
76 2ark_A Flavodoxin; FMN, struct 58.9 14 0.00048 30.8 5.4 56 155-216 6-62 (188)
77 3h5o_A Transcriptional regulat 58.6 99 0.0034 27.4 13.0 163 38-211 63-245 (339)
78 3k9c_A Transcriptional regulat 58.5 22 0.00074 31.0 6.8 64 152-216 11-77 (289)
79 3clk_A Transcription regulator 58.4 9.9 0.00034 33.1 4.5 64 152-215 7-75 (290)
80 3jy6_A Transcriptional regulat 57.8 23 0.00079 30.5 6.8 64 152-216 6-74 (276)
81 3qk7_A Transcriptional regulat 57.6 17 0.0006 31.7 6.0 65 152-216 5-76 (294)
82 3rg8_A Phosphoribosylaminoimid 57.3 32 0.0011 29.2 7.2 56 154-212 3-65 (159)
83 3hly_A Flavodoxin-like domain; 57.1 25 0.00086 28.7 6.6 59 155-216 2-61 (161)
84 2rgy_A Transcriptional regulat 56.9 34 0.0012 29.7 7.8 164 38-211 9-195 (290)
85 3jvd_A Transcriptional regulat 56.9 13 0.00045 33.5 5.2 145 38-198 65-218 (333)
86 2x7x_A Sensor protein; transfe 56.8 1E+02 0.0035 27.1 11.8 169 38-211 7-194 (325)
87 3h5o_A Transcriptional regulat 55.9 33 0.0011 30.6 7.8 63 152-215 61-128 (339)
88 3jy6_A Transcriptional regulat 55.3 97 0.0033 26.3 10.5 118 38-164 8-134 (276)
89 1o4v_A Phosphoribosylaminoimid 54.6 38 0.0013 29.4 7.4 58 153-213 13-76 (183)
90 3szu_A ISPH, 4-hydroxy-3-methy 54.1 38 0.0013 31.9 8.0 121 34-183 167-298 (328)
91 2i0f_A 6,7-dimethyl-8-ribityll 53.6 19 0.00064 30.5 5.2 61 154-215 13-83 (157)
92 3o1i_D Periplasmic protein TOR 53.6 17 0.00057 31.6 5.2 66 152-217 4-75 (304)
93 3gbv_A Putative LACI-family tr 53.6 37 0.0013 29.2 7.4 64 152-215 7-79 (304)
94 3g85_A Transcriptional regulat 53.5 18 0.00062 31.3 5.4 64 152-215 10-78 (289)
95 3brq_A HTH-type transcriptiona 53.2 1.1E+02 0.0036 26.1 14.5 166 38-211 20-206 (296)
96 3k4h_A Putative transcriptiona 53.1 16 0.00056 31.5 5.0 63 152-215 7-79 (292)
97 3l49_A ABC sugar (ribose) tran 52.7 17 0.00059 31.3 5.1 63 152-215 4-71 (291)
98 3bil_A Probable LACI-family tr 52.4 83 0.0028 28.2 9.9 148 39-197 68-228 (348)
99 3l49_A ABC sugar (ribose) tran 52.2 68 0.0023 27.4 8.9 141 38-182 6-154 (291)
100 1gud_A ALBP, D-allose-binding 51.7 1.2E+02 0.004 26.2 12.5 158 48-211 16-199 (288)
101 1czn_A Flavodoxin; FMN binding 51.6 18 0.00061 29.3 4.8 55 155-216 2-56 (169)
102 1gud_A ALBP, D-allose-binding 51.2 34 0.0011 29.7 6.8 62 153-214 1-68 (288)
103 3c3k_A Alanine racemase; struc 51.0 30 0.001 29.9 6.4 62 152-214 7-73 (285)
104 2a5l_A Trp repressor binding p 51.0 35 0.0012 28.1 6.6 39 154-193 6-44 (200)
105 1dbq_A Purine repressor; trans 50.9 34 0.0012 29.3 6.8 63 152-215 6-73 (289)
106 2dgd_A 223AA long hypothetical 50.4 67 0.0023 27.4 8.5 80 152-237 107-207 (223)
107 2fn9_A Ribose ABC transporter, 49.9 18 0.00061 31.3 4.7 61 154-215 3-68 (290)
108 2o20_A Catabolite control prot 48.7 97 0.0033 27.4 9.6 152 38-197 64-226 (332)
109 1xmp_A PURE, phosphoribosylami 48.3 37 0.0013 29.1 6.2 57 154-213 12-74 (170)
110 2ioy_A Periplasmic sugar-bindi 47.9 1.3E+02 0.0045 25.7 13.0 158 48-210 16-188 (283)
111 3kjx_A Transcriptional regulat 47.5 97 0.0033 27.5 9.5 164 39-211 70-253 (344)
112 3e3m_A Transcriptional regulat 47.3 19 0.00066 32.5 4.7 63 152-215 69-136 (355)
113 1jye_A Lactose operon represso 46.8 36 0.0012 30.7 6.5 62 152-213 60-126 (349)
114 3dnf_A ISPH, LYTB, 4-hydroxy-3 46.3 66 0.0023 29.9 8.1 118 36-184 155-283 (297)
115 3ksm_A ABC-type sugar transpor 46.1 28 0.00094 29.6 5.3 60 155-214 2-68 (276)
116 3brq_A HTH-type transcriptiona 45.9 38 0.0013 29.0 6.2 62 152-214 18-86 (296)
117 1qpz_A PURA, protein (purine n 45.8 49 0.0017 29.5 7.2 63 152-215 57-124 (340)
118 2zki_A 199AA long hypothetical 45.3 41 0.0014 27.8 6.1 39 154-194 5-43 (199)
119 3dbi_A Sugar-binding transcrip 45.1 51 0.0018 29.3 7.2 63 152-215 60-129 (338)
120 3d02_A Putative LACI-type tran 45.1 26 0.0009 30.3 5.1 32 154-185 5-36 (303)
121 3d8u_A PURR transcriptional re 44.9 31 0.0011 29.4 5.4 63 152-215 2-69 (275)
122 2hsg_A Glucose-resistance amyl 44.5 40 0.0014 29.9 6.3 163 38-210 61-244 (332)
123 1obo_A Flavodoxin; electron tr 44.4 22 0.00075 28.8 4.2 55 154-216 2-56 (169)
124 3h5t_A Transcriptional regulat 44.2 94 0.0032 27.9 8.9 117 92-212 128-275 (366)
125 3ctp_A Periplasmic binding pro 44.1 57 0.002 28.9 7.3 61 152-214 59-124 (330)
126 3gv0_A Transcriptional regulat 44.0 29 0.00098 30.1 5.2 63 152-214 7-75 (288)
127 2rgy_A Transcriptional regulat 43.9 35 0.0012 29.6 5.7 62 152-214 7-76 (290)
128 3kjx_A Transcriptional regulat 43.8 42 0.0014 30.0 6.4 62 153-215 68-134 (344)
129 3tb6_A Arabinose metabolism tr 43.6 1.5E+02 0.0051 25.1 10.9 139 38-186 16-169 (298)
130 2ioy_A Periplasmic sugar-bindi 42.9 52 0.0018 28.3 6.6 60 154-214 2-66 (283)
131 3end_A Light-independent proto 42.6 29 0.00098 30.9 5.0 51 139-192 28-78 (307)
132 2q9u_A A-type flavoprotein; fl 42.5 1.2E+02 0.0041 28.0 9.5 60 154-216 257-317 (414)
133 2dri_A D-ribose-binding protei 42.5 50 0.0017 28.2 6.5 60 154-214 2-66 (271)
134 3s40_A Diacylglycerol kinase; 41.9 68 0.0023 28.9 7.5 43 153-195 8-51 (304)
135 2h0a_A TTHA0807, transcription 41.7 39 0.0013 28.8 5.6 76 155-231 1-83 (276)
136 1tjy_A Sugar transport protein 41.7 35 0.0012 30.2 5.5 62 153-214 3-69 (316)
137 1hqk_A 6,7-dimethyl-8-ribityll 41.6 41 0.0014 28.3 5.4 61 154-215 13-81 (154)
138 1ykg_A SIR-FP, sulfite reducta 41.4 23 0.00077 29.0 3.8 56 154-215 10-65 (167)
139 1tvm_A PTS system, galactitol- 41.4 77 0.0026 24.6 6.8 64 157-231 24-90 (113)
140 3d02_A Putative LACI-type tran 41.1 77 0.0026 27.3 7.5 144 39-186 6-160 (303)
141 1ag9_A Flavodoxin; electron tr 40.6 45 0.0015 27.3 5.6 54 155-216 2-55 (175)
142 3bbl_A Regulatory protein of L 40.4 62 0.0021 27.9 6.8 62 152-214 3-73 (287)
143 2o20_A Catabolite control prot 40.4 56 0.0019 29.0 6.6 62 152-214 62-128 (332)
144 3bil_A Probable LACI-family tr 40.2 44 0.0015 30.1 5.9 62 152-214 65-131 (348)
145 1byk_A Protein (trehalose oper 40.0 1.6E+02 0.0056 24.5 12.3 148 39-197 4-159 (255)
146 1dbq_A Purine repressor; trans 39.8 1.7E+02 0.0057 24.8 9.5 168 38-212 8-194 (289)
147 2l2q_A PTS system, cellobiose- 39.6 1.2E+02 0.0043 23.0 7.7 73 158-236 8-88 (109)
148 1qpz_A PURA, protein (purine n 39.3 1.9E+02 0.0066 25.4 10.1 167 38-211 59-244 (340)
149 2h3h_A Sugar ABC transporter, 39.3 46 0.0016 29.2 5.8 60 154-214 2-66 (313)
150 1e2b_A Enzyme IIB-cellobiose; 38.9 68 0.0023 24.7 6.1 72 158-237 7-86 (106)
151 3tla_A MCCF; serine protease, 38.8 26 0.00089 33.4 4.2 53 19-71 19-82 (371)
152 3ctp_A Periplasmic binding pro 38.7 2E+02 0.0069 25.2 12.3 136 38-186 61-205 (330)
153 2rjo_A Twin-arginine transloca 38.4 42 0.0014 29.7 5.5 63 152-215 4-73 (332)
154 2i14_A Nicotinate-nucleotide p 38.1 83 0.0029 30.1 7.7 59 153-211 233-294 (395)
155 2fvy_A D-galactose-binding per 38.1 37 0.0013 29.4 4.9 61 154-215 3-69 (309)
156 1rvv_A Riboflavin synthase; tr 38.0 43 0.0015 28.1 5.0 61 154-215 13-81 (154)
157 1wzu_A Quinolinate synthetase 37.8 2.3E+02 0.0077 26.2 10.4 116 93-219 50-204 (300)
158 3lkv_A Uncharacterized conserv 37.6 95 0.0032 27.5 7.7 100 140-240 127-234 (302)
159 1jx6_A LUXP protein; protein-l 37.5 1.7E+02 0.0058 25.7 9.4 161 48-213 59-242 (342)
160 4fe7_A Xylose operon regulator 37.4 33 0.0011 31.9 4.7 58 152-211 24-82 (412)
161 1di0_A Lumazine synthase; tran 37.2 43 0.0015 28.2 4.9 61 154-215 11-79 (158)
162 2fqx_A Membrane lipoprotein TM 36.8 2.3E+02 0.0077 25.2 13.2 167 38-212 5-195 (318)
163 2vzf_A NADH-dependent FMN redu 36.7 57 0.002 27.2 5.7 42 155-196 4-47 (197)
164 2bfw_A GLGA glycogen synthase; 36.5 27 0.00092 28.3 3.5 53 156-215 72-125 (200)
165 3huu_A Transcription regulator 36.4 31 0.0011 30.1 4.2 63 152-215 21-93 (305)
166 2ywx_A Phosphoribosylaminoimid 35.7 1E+02 0.0036 25.9 7.0 55 156-213 2-59 (157)
167 8abp_A L-arabinose-binding pro 35.6 48 0.0016 28.7 5.2 59 154-214 3-66 (306)
168 3rot_A ABC sugar transporter, 35.6 56 0.0019 28.3 5.7 62 154-215 4-71 (297)
169 2hsg_A Glucose-resistance amyl 34.8 38 0.0013 30.1 4.5 63 152-215 59-126 (332)
170 3b6i_A Flavoprotein WRBA; flav 34.8 1.1E+02 0.0037 24.9 7.1 39 155-194 3-42 (198)
171 3nq4_A 6,7-dimethyl-8-ribityll 34.6 70 0.0024 26.9 5.8 61 154-215 13-82 (156)
172 1c2y_A Protein (lumazine synth 34.4 41 0.0014 28.3 4.3 61 154-215 14-81 (156)
173 2fn9_A Ribose ABC transporter, 33.7 2.2E+02 0.0075 24.1 13.0 169 39-211 4-197 (290)
174 1bvy_F Protein (cytochrome P45 33.5 68 0.0023 27.2 5.7 58 152-216 20-77 (191)
175 2ohh_A Type A flavoprotein FPR 33.0 1.1E+02 0.0039 27.9 7.6 61 153-216 256-317 (404)
176 2bpo_A CPR, P450R, NADPH-cytoc 32.4 98 0.0034 31.6 7.6 63 146-212 42-105 (682)
177 2bon_A Lipid kinase; DAG kinas 32.2 1E+02 0.0035 28.1 7.1 57 154-212 30-89 (332)
178 3lkv_A Uncharacterized conserv 32.0 2E+02 0.0067 25.4 8.8 48 21-68 124-174 (302)
179 2obx_A DMRL synthase 1, 6,7-di 31.9 50 0.0017 27.8 4.4 60 155-215 13-80 (157)
180 1ydg_A Trp repressor binding p 31.9 44 0.0015 27.9 4.2 41 153-194 6-46 (211)
181 2qv7_A Diacylglycerol kinase D 31.9 1.3E+02 0.0046 27.3 7.8 59 154-212 25-87 (337)
182 3hcw_A Maltose operon transcri 31.8 21 0.00072 31.2 2.2 63 152-215 6-78 (295)
183 3h75_A Periplasmic sugar-bindi 31.8 74 0.0025 28.3 6.0 60 153-213 3-70 (350)
184 1e5d_A Rubredoxin\:oxygen oxid 31.6 1.1E+02 0.0036 28.1 7.2 60 153-216 252-313 (402)
185 3gbv_A Putative LACI-family tr 31.6 2.4E+02 0.0081 23.9 10.9 172 38-213 9-208 (304)
186 2qu7_A Putative transcriptiona 31.4 59 0.002 27.9 5.1 62 152-215 7-73 (288)
187 1yob_A Flavodoxin 2, flavodoxi 30.7 1.1E+02 0.0036 25.1 6.4 47 21-67 72-125 (179)
188 3qe2_A CPR, P450R, NADPH--cyto 30.6 31 0.0011 34.9 3.5 51 152-203 17-67 (618)
189 2q62_A ARSH; alpha/beta, flavo 30.4 84 0.0029 27.8 6.0 61 154-216 35-108 (247)
190 2bru_C NAD(P) transhydrogenase 30.4 40 0.0014 29.1 3.6 86 145-236 23-142 (186)
191 3f6r_A Flavodoxin; FMN binding 30.3 45 0.0016 26.1 3.8 46 22-67 70-120 (148)
192 1kz1_A 6,7-dimethyl-8-ribityll 29.4 56 0.0019 27.6 4.3 61 154-215 18-87 (159)
193 2qh8_A Uncharacterized protein 29.1 1.1E+02 0.0039 26.6 6.7 62 152-214 7-78 (302)
194 1t5b_A Acyl carrier protein ph 29.1 1.1E+02 0.0038 24.8 6.2 40 155-194 3-46 (201)
195 4h1h_A LMO1638 protein; MCCF-l 29.0 38 0.0013 31.4 3.5 37 35-71 10-51 (327)
196 1ejb_A Lumazine synthase; anal 28.6 70 0.0024 27.2 4.8 61 154-215 17-90 (168)
197 3sr3_A Microcin immunity prote 28.5 39 0.0013 31.6 3.5 37 35-71 11-52 (336)
198 2wc1_A Flavodoxin; electron tr 27.5 19 0.00064 29.8 1.0 55 155-216 3-57 (182)
199 4e5s_A MCCFLIKE protein (BA_56 26.8 43 0.0015 31.2 3.5 37 34-70 9-50 (331)
200 3fwy_A Light-independent proto 26.3 75 0.0026 29.1 5.0 51 139-192 35-85 (314)
201 3oy2_A Glycosyltransferase B73 26.0 25 0.00085 32.0 1.7 59 156-214 217-282 (413)
202 2qu7_A Putative transcriptiona 25.8 2.1E+02 0.0071 24.3 7.6 137 39-186 10-155 (288)
203 3lft_A Uncharacterized protein 25.4 1.6E+02 0.0055 25.4 6.9 60 154-214 3-71 (295)
204 2c92_A 6,7-dimethyl-8-ribityll 24.9 98 0.0034 26.1 5.1 59 154-215 18-82 (160)
205 3fro_A GLGA glycogen synthase; 24.8 98 0.0033 27.8 5.5 43 169-213 296-338 (439)
206 2bmv_A Flavodoxin; electron tr 24.5 1.3E+02 0.0045 23.9 5.7 51 155-215 3-53 (164)
207 2vk2_A YTFQ, ABC transporter p 24.4 3.4E+02 0.011 23.3 12.4 153 39-197 4-173 (306)
208 1pno_A NAD(P) transhydrogenase 24.3 48 0.0016 28.6 3.0 86 147-238 18-137 (180)
209 2fcr_A Flavodoxin; electron tr 24.3 1.2E+02 0.0042 24.5 5.6 48 20-67 66-121 (173)
210 1ycg_A Nitric oxide reductase; 24.3 1.6E+02 0.0056 26.7 7.0 60 154-216 252-312 (398)
211 1d4o_A NADP(H) transhydrogenas 24.1 51 0.0017 28.5 3.1 84 148-237 18-135 (184)
212 1yob_A Flavodoxin 2, flavodoxi 24.1 29 0.001 28.6 1.6 56 154-216 1-56 (179)
213 2h31_A Multifunctional protein 23.0 1.5E+02 0.0053 28.7 6.7 58 152-212 264-328 (425)
214 1ag9_A Flavodoxin; electron tr 22.9 67 0.0023 26.2 3.6 47 21-67 63-116 (175)
215 2vk2_A YTFQ, ABC transporter p 22.6 1.1E+02 0.0038 26.5 5.3 61 154-215 3-68 (306)
216 3la6_A Tyrosine-protein kinase 22.3 2E+02 0.007 25.6 7.1 56 137-192 75-130 (286)
217 3uug_A Multiple sugar-binding 22.0 3.8E+02 0.013 23.0 11.3 142 38-182 4-160 (330)
218 2x7x_A Sensor protein; transfe 21.9 1E+02 0.0035 27.1 4.9 61 152-214 5-71 (325)
219 3rpe_A MDAB, modulator of drug 21.6 1.2E+02 0.004 26.5 5.1 60 152-212 24-90 (218)
220 1xov_A PLY protein, plypsa; al 21.6 1.2E+02 0.004 28.4 5.4 7 206-212 84-90 (326)
221 3aek_A Light-independent proto 21.2 1.1E+02 0.0037 29.3 5.3 69 154-231 184-255 (437)
222 2fsv_C NAD(P) transhydrogenase 21.0 60 0.002 28.5 3.0 87 146-238 40-160 (203)
223 2fzv_A Putative arsenical resi 20.9 1.6E+02 0.0055 26.7 6.1 44 152-195 57-101 (279)
224 3sho_A Transcriptional regulat 20.8 2.8E+02 0.0097 22.2 7.2 68 145-218 32-100 (187)
225 5nul_A Flavodoxin; electron tr 20.7 1.8E+02 0.006 22.2 5.6 45 22-67 65-111 (138)
226 1f4p_A Flavodoxin; electron tr 20.7 1.5E+02 0.0052 22.8 5.3 48 20-67 67-119 (147)
227 3cio_A ETK, tyrosine-protein k 20.6 2.5E+02 0.0086 25.0 7.3 45 155-199 105-151 (299)
228 3l4e_A Uncharacterized peptida 20.5 1.5E+02 0.0051 25.4 5.5 47 21-68 12-62 (206)
229 2xsa_A Ogoga, hyaluronoglucosa 20.1 6.1E+02 0.021 24.7 10.5 81 115-197 30-120 (447)
No 1
>3lzd_A DPH2; diphthamide biosynthesis, radical SAM enzyme, gene triplicat iron-sulfur cluster, biosynthetic protein; 2.10A {Pyrococcus horikoshii} PDB: 3lzc_A
Probab=100.00 E-value=2e-73 Score=553.56 Aligned_cols=231 Identities=27% Similarity=0.422 Sum_probs=220.7
Q ss_pred CCCCCCCCCcCEEEEcccccCChHHHHHHHHHhCCC-CCeEEEEeccccHhHHHHHHHHHHhCCCeEEecCC--CCCCCc
Q 042576 1 CLVPVDFTRIPCLYVFVEIKIDVNRLIDTIKVNYSD-PGKLILAGTIQFASAIRAAKPELEKQGFKVMIPQS--KPLSAG 77 (313)
Q Consensus 1 CL~Pv~~t~ipvlYVFv~i~iD~~~~i~~i~~~f~~-~~~i~Lv~tiQf~~~l~~~~~~L~~~g~~v~ipq~--~pls~G 77 (313)
||+| ++++||+|||+++++|++++++++.++|++ .++|+|++|+||.|+++.+++.|++.|++++++|. +++++|
T Consensus 117 CL~~--~~~lpvlYVf~~~~iD~~~~~~~~~~~~~~~~~~i~L~~tiq~~~~l~~~~~~L~~~g~~v~i~~~~~~~~~~g 194 (378)
T 3lzd_A 117 YMKL--PLEVPTIFVPAFARVSVVEALKENIGEIKKLGRKIIVTTTAQHIHQLKEAKEFLESEGFEVSIGRGDSRISWPG 194 (378)
T ss_dssp CCSC--CCSSCEEEEECCCCCCCHHHHHHTHHHHHTTCSEEEEEECGGGGGGHHHHHHHHHHTTCEEECCCCCTTCSSTT
T ss_pred cCCc--ccCCCEEEEeccCCCCHHHHHHHHHHhccCcCCeEEEEEcHHHHHHHHHHHHHHHHcCCeEEecCCCCCCCCCC
Confidence 9998 479999999999999999999999999975 57899999999999999999999999999999886 789999
Q ss_pred cccCCCCCCCCCCCCCCeEEEecCCcccHHHHHhhCCCceEEEeCCCCCcccccccChHHHHHHHHHHHHHHhhcCCEEE
Q 042576 78 EVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWG 157 (313)
Q Consensus 78 evLGCt~~~~~~~~~~d~iv~igdGrFHle~~mi~np~~~~y~yDPys~~~~~e~~d~~~~l~~R~~~I~kak~~A~~~G 157 (313)
|||||+++.++. ++|+++|||+|+||++++||+ |.+++|+||||+++++++ ++++|+++|+++|+||+ +|++||
T Consensus 195 qvLGC~~~~~~~--~~d~~lyvG~g~FH~~~l~l~-~~~~v~~yDP~s~~~~~~--~~~~~l~rR~~~I~kA~-dA~~~G 268 (378)
T 3lzd_A 195 QVLGCNYSVAKV--RGEGILFIGSGIFHPLGLAVA-TRKKVLAIDPYTKAFSWI--DPERFIRKRWAQIAKAM-DAKKFG 268 (378)
T ss_dssp BCBTTBCGGGCS--SCSEEEEESSSSHHHHHHHHH-HCSEEEEECTTTCCEEEC--CCHHHHHHHHHHHHHHT-TCCEEE
T ss_pred ccccccCCCccc--CCceEEEEcCCchhHHHHHhc-cCCcEEEECCCCCceeec--cHHHHHHHHHHHHHHHh-cCCEEE
Confidence 999999998763 379999999999999999999 899999999999999875 69999999999999999 999999
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEecCCCccccccCCCCCcccCHHHHHH
Q 042576 158 IVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAFTKPLLTPFEAEI 237 (313)
Q Consensus 158 IIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~iaCPrlsid~~~~f~kPvLTPyE~~v 237 (313)
||+||||+|||++++++|+++|+++|||+|+|+||||||+||+||+ ||+||||||||+||||+++|+||||||||++|
T Consensus 269 IIvgTLg~Q~~~~~~~~L~~ll~~~Gkk~y~i~vg~inp~KLanF~--iD~fV~vaCPrlsidd~~~F~KPvLTPyE~ev 346 (378)
T 3lzd_A 269 VIVSIKKGQLRLAEAKRIVKLLKKHGREARLIVMNDVNYHKLEGFP--FEAYVVVACPRVPLDDYGAWRKPVLTPKEVEI 346 (378)
T ss_dssp EEEECSTTTCCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHTTSC--CSEEEECSCTHHHHSCCSCCSSCEECHHHHHH
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCCC--CCEEEEecCCCccccchhhCCCcccCHHHHHH
Confidence 9999999999999999999999999999999999999999999995 99999999999999999999999999999999
Q ss_pred HhCC
Q 042576 238 ALGV 241 (313)
Q Consensus 238 AL~~ 241 (313)
|||.
T Consensus 347 AL~~ 350 (378)
T 3lzd_A 347 LLGL 350 (378)
T ss_dssp HTTS
T ss_pred HhCC
Confidence 9986
No 2
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=87.76 E-value=9.7 Score=33.58 Aligned_cols=164 Identities=10% Similarity=0.067 Sum_probs=90.1
Q ss_pred CeEEEEe-cc---ccHhHHHHHHHHHHhCCCeEEecCCCCCCCcc--ccCCCCCCCCCCCCCCeEEEecCCcccH-HHHH
Q 042576 38 GKLILAG-TI---QFASAIRAAKPELEKQGFKVMIPQSKPLSAGE--VLGCTAPKIPARESDFNLVFIADGRFHL-EAFM 110 (313)
Q Consensus 38 ~~i~Lv~-ti---Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~Ge--vLGCt~~~~~~~~~~d~iv~igdGrFHl-e~~m 110 (313)
..|+++. ++ -|...++.+.+.+++.|+++++-....-...| .+.- ... ..+|++|+.+...-.. .--.
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~---l~~--~~vdgiI~~~~~~~~~~~~~~ 90 (303)
T 3kke_A 16 GTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRL---VSE--GRVDGVLLQRREDFDDDMLAA 90 (303)
T ss_dssp -CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHH---HHS--CSSSEEEECCCTTCCHHHHHH
T ss_pred CEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHH---HHh--CCCcEEEEecCCCCcHHHHHH
Confidence 3577663 22 35666788999999999997763221100000 0000 001 2379998876443232 1223
Q ss_pred hhCCCceEEEeCCCCC-cccccccChHHHHHH-HHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEE-
Q 042576 111 ISNPGIKTFRYDPYLG-KLFLEEYDNKGMRET-RKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYV- 187 (313)
Q Consensus 111 i~np~~~~y~yDPys~-~~~~e~~d~~~~l~~-R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y- 187 (313)
+.. .+|++.+|-... .+.....|....-+. =.++++ + ..+++|+|.|..+......-.+-.++-++++|.+.-
T Consensus 91 l~~-~iPvV~i~~~~~~~~~~V~~D~~~~g~~a~~~L~~--~-G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~ 166 (303)
T 3kke_A 91 VLE-GVPAVTINSRVPGRVGSVILDDQKGGGIATEHLIT--L-GHSRIAFISGTAIHDTAQRRKEGYLETLASAGLRSEA 166 (303)
T ss_dssp HHT-TSCEEEESCCCTTCCCEEEECHHHHHHHHHHHHHH--T-TCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCCCCG
T ss_pred HhC-CCCEEEECCcCCCCCCEEEECcHHHHHHHHHHHHH--C-CCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCCCCc
Confidence 445 899999985543 233333443322111 012222 4 678999999886655455556667778888887643
Q ss_pred -EEEeCCCCHHH-------------HhcCcCCccEEEE
Q 042576 188 -VIMMSEISPAR-------------VALFEDSVDAWIQ 211 (313)
Q Consensus 188 -~i~v~einp~K-------------Lanf~~~ID~fV~ 211 (313)
.+..+..+.+. |..-+ ++|+++-
T Consensus 167 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~-~~~ai~~ 203 (303)
T 3kke_A 167 AWVVDAGWEADAGSAALNTLYRGANLGKPD-GPTAVVV 203 (303)
T ss_dssp GGEEECCSSHHHHHHHHHHHHHHHCTTSTT-SCSEEEE
T ss_pred ceEEecCCChHHHHHHHHHhcchhhhcCCC-CCcEEEE
Confidence 24456665543 33334 6888875
No 3
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=87.19 E-value=14 Score=32.11 Aligned_cols=164 Identities=7% Similarity=0.007 Sum_probs=87.0
Q ss_pred CeEEEEec------cccHhHHHHHHHHHHhCCCeEEecCCCC--CCCccccCCCCCCCCCCCCCCeEEEecCCcccHHHH
Q 042576 38 GKLILAGT------IQFASAIRAAKPELEKQGFKVMIPQSKP--LSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAF 109 (313)
Q Consensus 38 ~~i~Lv~t------iQf~~~l~~~~~~L~~~g~~v~ipq~~p--ls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~~ 109 (313)
..|+++.. --|...++.+.+.+++.|+++++-.... -..-+++- .+.. ..+|++|+.+...-...--
T Consensus 9 ~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~----~l~~-~~vdgiIi~~~~~~~~~~~ 83 (288)
T 3gv0_A 9 NVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRY----ILET-GSADGVIISKIEPNDPRVR 83 (288)
T ss_dssp CEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHH----HHHH-TCCSEEEEESCCTTCHHHH
T ss_pred CEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHH----HHHc-CCccEEEEecCCCCcHHHH
Confidence 45776643 2356667778889999999977632211 00000100 0000 2479998876432221111
Q ss_pred HhhCCCceEEEeCCCCCc--ccccccChHHHHHHHHHHHHH--HhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCc
Q 042576 110 MISNPGIKTFRYDPYLGK--LFLEEYDNKGMRETRKRAIEK--AMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFD 185 (313)
Q Consensus 110 mi~np~~~~y~yDPys~~--~~~e~~d~~~~l~~R~~~I~k--ak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk 185 (313)
.+....+|++.+|-.... +.....|.... -|. +.+. .+ ..+++|+|.|..+......-.+-.++.++++|.+
T Consensus 84 ~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~--g~~-a~~~L~~~-G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~ 159 (288)
T 3gv0_A 84 FMTERNMPFVTHGRSDMGIEHAFHDFDNEAY--AYE-AVERLAQC-GRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLT 159 (288)
T ss_dssp HHHHTTCCEEEESCCCSSCCCEEEEECHHHH--HHH-HHHHHHHT-TCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCE
T ss_pred HHhhCCCCEEEECCcCCCCCCcEEEeCcHHH--HHH-HHHHHHHC-CCCeEEEEcCCcccchHHHHHHHHHHHHHHcCCC
Confidence 233357899988865322 22223343222 121 1111 23 6789999998866555555566677888888876
Q ss_pred EEEE--EeCCCCHH----HH----hcCcCCccEEEE
Q 042576 186 YVVI--MMSEISPA----RV----ALFEDSVDAWIQ 211 (313)
Q Consensus 186 ~y~i--~v~einp~----KL----anf~~~ID~fV~ 211 (313)
.-.. ..++-+.+ .+ +..+ ++|+++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~ 194 (288)
T 3gv0_A 160 EFPIDAVTIETPLEKIRDFGQRLMQSSD-RPDGIVS 194 (288)
T ss_dssp ECCCCSCCTTSCHHHHHHHHHHHTTSSS-CCSEEEE
T ss_pred cchhheeccccchHHHHHHHHHHHhCCC-CCcEEEE
Confidence 5432 23444442 22 2234 5888774
No 4
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=86.97 E-value=15 Score=32.15 Aligned_cols=151 Identities=11% Similarity=0.048 Sum_probs=81.8
Q ss_pred CeEEEEe---------ccccHhHHHHHHHHHHhCCCeEEecCCCCCCCc--cccCCCCCCCCCCCCCCeEEEecCCcccH
Q 042576 38 GKLILAG---------TIQFASAIRAAKPELEKQGFKVMIPQSKPLSAG--EVLGCTAPKIPARESDFNLVFIADGRFHL 106 (313)
Q Consensus 38 ~~i~Lv~---------tiQf~~~l~~~~~~L~~~g~~v~ipq~~pls~G--evLGCt~~~~~~~~~~d~iv~igdGrFHl 106 (313)
..|+++. +--|...++.+.+.+++.|+++++-....-... +.+- .+.. ..+|++|+.+...-..
T Consensus 8 ~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~----~l~~-~~vdGiI~~~~~~~~~ 82 (295)
T 3hcw_A 8 YKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYK----MIKQ-RMVDAFILLYSKENDP 82 (295)
T ss_dssp CEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHH----HHHT-TCCSEEEESCCCTTCH
T ss_pred cEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHH----HHHh-CCcCEEEEcCcccChH
Confidence 4577775 224556678889999999999776322100000 0000 0000 2479988875432111
Q ss_pred HHHHhhCCCceEEEeCCCCCc----ccccccChHHHHHH-HHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHH
Q 042576 107 EAFMISNPGIKTFRYDPYLGK----LFLEEYDNKGMRET-RKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEK 181 (313)
Q Consensus 107 e~~mi~np~~~~y~yDPys~~----~~~e~~d~~~~l~~-R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~ 181 (313)
.--.+....+|++.+|-.... +.....|....-+. =.++++ + ..+++|+|.|..+......-.+-.++-+++
T Consensus 83 ~~~~l~~~~iPvV~i~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~--~-G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~ 159 (295)
T 3hcw_A 83 IKQMLIDESMPFIVIGKPTSDIDHQFTHIDNDNILASENLTRHVIE--Q-GVDELIFITEKGNFEVSKDRIQGFETVASQ 159 (295)
T ss_dssp HHHHHHHTTCCEEEESCCCSSGGGGSCEEEECHHHHHHHHHHHHHH--H-CCSEEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCEEEECCCCccccCCceEEecCcHHHHHHHHHHHHH--c-CCccEEEEcCCccchhHHHHHHHHHHHHHH
Confidence 111233457899988854332 22222343222111 112222 4 678999999886654444556667778889
Q ss_pred cCCcEEEEEeCCCCHH
Q 042576 182 KGFDYVVIMMSEISPA 197 (313)
Q Consensus 182 ~Gkk~y~i~v~einp~ 197 (313)
+|.+.. +..+..+.+
T Consensus 160 ~g~~~~-~~~~~~~~~ 174 (295)
T 3hcw_A 160 FNLDYQ-IIETSNERE 174 (295)
T ss_dssp TTCEEE-EEEECSCHH
T ss_pred cCCCee-EEeccCCHH
Confidence 998876 445566654
No 5
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=86.15 E-value=9 Score=33.62 Aligned_cols=168 Identities=12% Similarity=0.072 Sum_probs=88.0
Q ss_pred eEEEEecc----ccHhHHHHHHHHHHhCCCeEEecCCCCC-CCccccCCCCCCCCCCCCCCeEEEecCCccc-HHHH-Hh
Q 042576 39 KLILAGTI----QFASAIRAAKPELEKQGFKVMIPQSKPL-SAGEVLGCTAPKIPARESDFNLVFIADGRFH-LEAF-MI 111 (313)
Q Consensus 39 ~i~Lv~ti----Qf~~~l~~~~~~L~~~g~~v~ipq~~pl-s~GevLGCt~~~~~~~~~~d~iv~igdGrFH-le~~-mi 111 (313)
+|+++..- -|...++.+.+.+++.|+++.+-..... .+.+-...-...+. ..+|++|+.+...-. ...+ .+
T Consensus 5 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiii~~~~~~~~~~~~~~~ 82 (297)
T 3rot_A 5 KYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALA--TYPSGIATTIPSDTAFSKSLQRA 82 (297)
T ss_dssp EEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHH--TCCSEEEECCCCSSTTHHHHHHH
T ss_pred EEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHH--cCCCEEEEeCCCHHHHHHHHHHH
Confidence 46655322 2555567788888888998765321100 00000000000001 237888876532211 1111 23
Q ss_pred hCCCceEEEeCCCCCc------ccccccChHHHHH-HHHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC
Q 042576 112 SNPGIKTFRYDPYLGK------LFLEEYDNKGMRE-TRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGF 184 (313)
Q Consensus 112 ~np~~~~y~yDPys~~------~~~e~~d~~~~l~-~R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gk 184 (313)
...++|++.+|-.... +.....|....-+ .=.+++++.. +.+++++|.|..+......-.+-.++-++++|.
T Consensus 83 ~~~giPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~-~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~ 161 (297)
T 3rot_A 83 NKLNIPVIAVDTRPKDKTKNPYLVFLGSDNLLAGKKLGEKALELTP-SAKRALVLNPQPGHIGLEKRAYGIKTILQDKGI 161 (297)
T ss_dssp HHHTCCEEEESCCCSCTTTSCCSCEEECCHHHHHHHHHHHHHHHCT-TCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCCEEEEcCCCccccccCcceEEccChHHHHHHHHHHHHHhcC-CCceEEEEeCCCCcHHHHHHHHHHHHHHHhcCC
Confidence 3347889888854332 2223344332211 1122333333 378999999887665555666777888899998
Q ss_pred cEEEEEeCCCCHHH--------HhcCcCCccEEEE
Q 042576 185 DYVVIMMSEISPAR--------VALFEDSVDAWIQ 211 (313)
Q Consensus 185 k~y~i~v~einp~K--------Lanf~~~ID~fV~ 211 (313)
+...+. +.-+++. |...+ ++|+++-
T Consensus 162 ~~~~~~-~~~~~~~~~~~~~~~l~~~~-~~~ai~~ 194 (297)
T 3rot_A 162 FFEELD-VGTDPNQVQSRVKSYFKIHP-ETNIIFC 194 (297)
T ss_dssp EEEEEE-CCSCHHHHHHHHHHHHHHCT-TCCEEEE
T ss_pred eEEEee-cCCChHHHHHHHHHHHHhCC-CCCEEEE
Confidence 876655 3334332 44445 6888775
No 6
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=85.97 E-value=16 Score=31.50 Aligned_cols=158 Identities=8% Similarity=0.026 Sum_probs=85.9
Q ss_pred CeEEEEe----ccccHhHHHHHHHHHHhCCCeEEecCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCcccHHHH-Hhh
Q 042576 38 GKLILAG----TIQFASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAF-MIS 112 (313)
Q Consensus 38 ~~i~Lv~----tiQf~~~l~~~~~~L~~~g~~v~ipq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~~-mi~ 112 (313)
.+|+++. +--|...++.+.+.+++.|+++++-....-...| .. . .+|++|+.+... .-..+ .+.
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~-~~-----~----~vdgiI~~~~~~-~~~~~~~l~ 77 (277)
T 3cs3_A 9 NIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSGKKSHLFI-PE-----K----MVDGAIILDWTF-PTKEIEKFA 77 (277)
T ss_dssp CEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEESTTTTTCC-CT-----T----TCSEEEEECTTS-CHHHHHHHH
T ss_pred cEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeCCCCHHHH-hh-----c----cccEEEEecCCC-CHHHHHHHH
Confidence 4577764 2235566788889999999997652211100001 00 0 378988776432 21222 233
Q ss_pred CCCceEEEeCCCCC--cccccccChHHHHHH-HHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEE
Q 042576 113 NPGIKTFRYDPYLG--KLFLEEYDNKGMRET-RKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVI 189 (313)
Q Consensus 113 np~~~~y~yDPys~--~~~~e~~d~~~~l~~-R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i 189 (313)
...+|++.+|-... .+.....|..+.-+. =..+++ + ..+++|+|.|..+......-.+-.++-++++|.+.. +
T Consensus 78 ~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~--~-G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~-~ 153 (277)
T 3cs3_A 78 ERGHSIVVLDRTTEHRNIRQVLLDNRGGATQAIEQFVN--V-GSKKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYE-I 153 (277)
T ss_dssp HTTCEEEESSSCCCSTTEEEEEECHHHHHHHHHHHHHH--T-TCSCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEE-E
T ss_pred hcCCCEEEEecCCCCCCCCEEEeCcHHHHHHHHHHHHH--c-CCceEEEEeCCccCccHHHHHHHHHHHHHHcCCCee-E
Confidence 45789999985432 222233443322111 011222 3 568999998876543334445556677888998766 5
Q ss_pred EeCCCCHHH--------Hhc-CcCCccEEEE
Q 042576 190 MMSEISPAR--------VAL-FEDSVDAWIQ 211 (313)
Q Consensus 190 ~v~einp~K--------Lan-f~~~ID~fV~ 211 (313)
..+..+++. |.. .+ ++|+++.
T Consensus 154 ~~~~~~~~~~~~~~~~~l~~~~~-~~~ai~~ 183 (277)
T 3cs3_A 154 IQGDFTEPSGYAAAKKILSQPQT-EPVDVFA 183 (277)
T ss_dssp EECCSSHHHHHHHHHHHTTSCCC-SSEEEEE
T ss_pred EeCCCChhHHHHHHHHHHhcCCC-CCcEEEE
Confidence 556666542 222 34 5888764
No 7
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=84.58 E-value=9.2 Score=33.20 Aligned_cols=165 Identities=15% Similarity=0.057 Sum_probs=91.6
Q ss_pred CeEEEEec--c---ccHhHHHHHHHHHHhCCCeEEecC--CCCCCCccccCCCCCCCCCCCCCCeEEEecCCcccHHHHH
Q 042576 38 GKLILAGT--I---QFASAIRAAKPELEKQGFKVMIPQ--SKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFM 110 (313)
Q Consensus 38 ~~i~Lv~t--i---Qf~~~l~~~~~~L~~~g~~v~ipq--~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~~m 110 (313)
..|+++.. + -|...++.+.+.+++.|+++++-. ..+...-+.+. .+.. ..+|++|+.+...-...-..
T Consensus 12 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~----~l~~-~~vdgiIi~~~~~~~~~~~~ 86 (289)
T 3g85_A 12 PTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKG----ISKE-NSFDAAIIANISNYDLEYLN 86 (289)
T ss_dssp CEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGG----GSTT-TCCSEEEESSCCHHHHHHHH
T ss_pred ceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHH----HHhc-cCCCEEEEecCCcccHHHHH
Confidence 45886653 2 345557778889999999865421 11111111110 1111 24799988765432222233
Q ss_pred hhCCCceEEEeCCCCCcccccccChHHHHHHH-HHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEE--
Q 042576 111 ISNPGIKTFRYDPYLGKLFLEEYDNKGMRETR-KRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYV-- 187 (313)
Q Consensus 111 i~np~~~~y~yDPys~~~~~e~~d~~~~l~~R-~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y-- 187 (313)
.....+|++.+|.....+.....|....-+.= .+++ .+ ..+++|+|.|..+......-.+-.++-++++|.+.-
T Consensus 87 ~~~~~iPvV~~~~~~~~~~~V~~D~~~~~~~a~~~L~--~~-G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~ 163 (289)
T 3g85_A 87 KASLTLPIILFNRLSNKYSSVNVDNYKMGEKASLLFA--KK-RYKSAAAILTESLNDAMDNRNKGFIETCHKNGIKISEN 163 (289)
T ss_dssp HCCCSSCEEEESCCCSSSEEEEECHHHHHHHHHHHHH--HT-TCCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGG
T ss_pred hccCCCCEEEECCCCCCCCEEEeCHHHHHHHHHHHHH--Hc-CCCEEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChh
Confidence 34457899999976554444444543322111 1111 24 678999999986655555566777788888887642
Q ss_pred EEEeCCCCHHH--------HhcCcCCccEEEE
Q 042576 188 VIMMSEISPAR--------VALFEDSVDAWIQ 211 (313)
Q Consensus 188 ~i~v~einp~K--------Lanf~~~ID~fV~ 211 (313)
.+..+..+.+. |...+ ++|+++.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~ 194 (289)
T 3g85_A 164 HIIAAENSIHGGVDAAKKLMKLKN-TPKALFC 194 (289)
T ss_dssp GEEECCSSHHHHHHHHHHHTTSSS-CCSEEEE
T ss_pred heeccCCCHHHHHHHHHHHHcCCC-CCcEEEE
Confidence 23345555432 22334 6888874
No 8
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=84.12 E-value=3 Score=35.79 Aligned_cols=78 Identities=12% Similarity=0.274 Sum_probs=52.7
Q ss_pred CCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH----HhcC-cCCccEEEEecCCCccccccCCCCC
Q 042576 153 ARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR----VALF-EDSVDAWIQIACPRLSIDWGDAFTK 227 (313)
Q Consensus 153 A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K----Lanf-~~~ID~fV~iaCPrlsid~~~~f~k 227 (313)
.++||+|+..+.-..+..+++.+++.++++|....++. ..-++++ +..+ ...+|.+|+.++.......-.....
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~l~~~~~ 80 (255)
T 1byk_A 2 DKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMME-SQFSPQLVAEHLGVLKRRNIDGVVLFGFTGITEEMLAHWQS 80 (255)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHHTTTCCEEEEECCTTCCTTTSGGGSS
T ss_pred CCEEEEEeCCCCCccHHHHHHHHHHHHHHcCCEEEEEe-CCCcHHHHHHHHHHHHhcCCCEEEEecCccccHHHHHhcCC
Confidence 47899999988877788999999999999998765554 3445543 2233 1259999998875433332233345
Q ss_pred cccC
Q 042576 228 PLLT 231 (313)
Q Consensus 228 PvLT 231 (313)
|+++
T Consensus 81 pvV~ 84 (255)
T 1byk_A 81 SLVL 84 (255)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 6653
No 9
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=82.59 E-value=7.1 Score=34.16 Aligned_cols=171 Identities=12% Similarity=0.090 Sum_probs=85.0
Q ss_pred eEEEEe-cc---ccHhHHHHHHHHHHhCCCeEEecCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCcccHHH-H-Hhh
Q 042576 39 KLILAG-TI---QFASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEA-F-MIS 112 (313)
Q Consensus 39 ~i~Lv~-ti---Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~-~-mi~ 112 (313)
+|+++. ++ -|...++.+.+.+++.|+++++-... .+.+-+..-...+. ..+|++|+.+...-.... + .+.
T Consensus 4 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~~~~~~~~i~~l~~--~~vdgiii~~~~~~~~~~~~~~~~ 79 (306)
T 8abp_A 4 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP--DGEKTLNAIDSLAA--SGAKGFVICTPDPKLGSAIVAKAR 79 (306)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEECC--SHHHHHHHHHHHHH--TTCCEEEEECSCGGGHHHHHHHHH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCC--CHHHHHHHHHHHHH--cCCCEEEEeCCCchhhHHHHHHHH
Confidence 466553 22 34555677888888889887642110 11000000000001 237898887643222221 1 233
Q ss_pred CCCceEEEeC-CC--CC-----cccccccChHHHHH-HHHHHHHHHhhc---CCEEEEEE-eCCCCCCcHHHHHHHHHHH
Q 042576 113 NPGIKTFRYD-PY--LG-----KLFLEEYDNKGMRE-TRKRAIEKAMKE---ARTWGIVL-GTLGRQGNPRILERLQKRM 179 (313)
Q Consensus 113 np~~~~y~yD-Py--s~-----~~~~e~~d~~~~l~-~R~~~I~kak~~---A~~~GIIv-gTLg~Q~~~~ii~~l~~ll 179 (313)
..++|++.+| +. .. .+.....|....-+ .=.+++++.... .+++|++. |..+......-.+-.++-+
T Consensus 80 ~~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~~~R~~Gf~~~l 159 (306)
T 8abp_A 80 GYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 159 (306)
T ss_dssp HTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHHHHHHHHHHHH
T ss_pred HCCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHHHHHHHHHHHHH
Confidence 4578999999 32 21 22222334332211 112334332202 23899995 7765444445556667778
Q ss_pred HHcCCc---EEEEEeCCCCHHH--------HhcCcCCccEEEEecC
Q 042576 180 EKKGFD---YVVIMMSEISPAR--------VALFEDSVDAWIQIAC 214 (313)
Q Consensus 180 ~~~Gkk---~y~i~v~einp~K--------Lanf~~~ID~fV~iaC 214 (313)
+++|.. ......+.-+.++ |...+ ++|+|+++++
T Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~a~~i~~~ 204 (306)
T 8abp_A 160 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHP-EVKHWLIVGM 204 (306)
T ss_dssp HHHTCCGGGEEEEECSSSSHHHHHHHHHHHHTTCT-TCSEEEEECS
T ss_pred HhcCCCCcEEEeeccCCCChHHHHHHHHHHHHhCC-CCceEEEEeC
Confidence 888753 4444456666543 44556 7998555544
No 10
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=82.28 E-value=3.7 Score=35.89 Aligned_cols=76 Identities=21% Similarity=0.374 Sum_probs=53.6
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH----HhcCc-CCccEEEEecCCCccccccCCCC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR----VALFE-DSVDAWIQIACPRLSIDWGDAFT 226 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K----Lanf~-~~ID~fV~iaCPrlsid~~~~f~ 226 (313)
..++||+|+..+....+..+++.+++.++++|....++.-+.-++++ +..+. ..+|++|+.+ +. +..-..-.
T Consensus 9 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~-~~--~~~~~~~~ 85 (277)
T 3hs3_A 9 KSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAIINFENNNVDGIITSA-FT--IPPNFHLN 85 (277)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC-CC--CCTTCCCS
T ss_pred CCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc-hH--HHHHHhCC
Confidence 67899999999988888899999999999999884445555556554 22231 2599999987 33 33333445
Q ss_pred Cccc
Q 042576 227 KPLL 230 (313)
Q Consensus 227 kPvL 230 (313)
.|++
T Consensus 86 iPvV 89 (277)
T 3hs3_A 86 TPLV 89 (277)
T ss_dssp SCEE
T ss_pred CCEE
Confidence 5654
No 11
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=82.13 E-value=23 Score=31.02 Aligned_cols=164 Identities=7% Similarity=-0.005 Sum_probs=85.6
Q ss_pred CeEEEEecc---------ccHhHHHHHHHHHHhCCCeEEecCCCCCCCc--cccCCCCCCCCCCCCCCeEEEecCCcccH
Q 042576 38 GKLILAGTI---------QFASAIRAAKPELEKQGFKVMIPQSKPLSAG--EVLGCTAPKIPARESDFNLVFIADGRFHL 106 (313)
Q Consensus 38 ~~i~Lv~ti---------Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~G--evLGCt~~~~~~~~~~d~iv~igdGrFHl 106 (313)
.+|+++..- -|...++.+.+.+++.|+++++-....-... +.+. .+.. ..+|++|+.+...-..
T Consensus 23 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~----~l~~-~~vdgiIi~~~~~~~~ 97 (305)
T 3huu_A 23 LTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKT----MIQS-KSVDGFILLYSLKDDP 97 (305)
T ss_dssp CEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECCCSSHHHHHHHHHH----HHHT-TCCSEEEESSCBTTCH
T ss_pred CEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHH----HHHh-CCCCEEEEeCCcCCcH
Confidence 458876432 2455567788899999999876322100000 0000 0000 2479988875432111
Q ss_pred HHHHhhCCCceEEEeCCCCC--cccccccChHHHHHHHHHHHHH--HhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHc
Q 042576 107 EAFMISNPGIKTFRYDPYLG--KLFLEEYDNKGMRETRKRAIEK--AMKEARTWGIVLGTLGRQGNPRILERLQKRMEKK 182 (313)
Q Consensus 107 e~~mi~np~~~~y~yDPys~--~~~~e~~d~~~~l~~R~~~I~k--ak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~ 182 (313)
.--.+....+|++.+|-... .+.....|....- |. +.+. .+ ..++||+|.|..+......-.+-.++-++++
T Consensus 98 ~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g--~~-a~~~L~~~-G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~ 173 (305)
T 3huu_A 98 IEHLLNEFKVPYLIVGKSLNYENIIHIDNDNIDAA--YQ-LTQYLYHL-GHRHILFLQESGHYAVTEDRSVGFKQYCDDV 173 (305)
T ss_dssp HHHHHHHTTCCEEEESCCCSSTTCCEEECCHHHHH--HH-HHHHHHHT-TCCSEEEEEESSCBHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCEEEECCCCcccCCcEEEeCHHHHH--HH-HHHHHHHC-CCCeEEEEcCCcccchhHHHHHHHHHHHHHc
Confidence 11123335789998886542 1332334433221 21 1111 23 6689999999876555555566677888889
Q ss_pred CCcEEEEEeCCCCH--HH-----HhcCcCCccEEEE
Q 042576 183 GFDYVVIMMSEISP--AR-----VALFEDSVDAWIQ 211 (313)
Q Consensus 183 Gkk~y~i~v~einp--~K-----Lanf~~~ID~fV~ 211 (313)
|.+...+..+..+. +. |..-+ ++|+++-
T Consensus 174 g~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~ 208 (305)
T 3huu_A 174 KISNDCVVIKSMNDLRDFIKQYCIDASH-MPSVIIT 208 (305)
T ss_dssp TCCCCEEEECSHHHHHHHC--------C-CCSEEEE
T ss_pred CCCcccEEecCcHHHHHHHHHhhhcCCC-CCCEEEE
Confidence 97765444444322 11 33334 5888764
No 12
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=81.64 E-value=13 Score=32.80 Aligned_cols=161 Identities=13% Similarity=0.076 Sum_probs=82.7
Q ss_pred cHhHHHHHHHHHHhCCCeEEecCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCcccH-HHHH-hhCCCceEEEeCCCC
Q 042576 48 FASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHL-EAFM-ISNPGIKTFRYDPYL 125 (313)
Q Consensus 48 f~~~l~~~~~~L~~~g~~v~ipq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHl-e~~m-i~np~~~~y~yDPys 125 (313)
|...++.+.+.+++.|+++.+-......+.+-...-...+. ..+|++|+.+...-.+ ..+. +....+|++.+|...
T Consensus 15 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~ 92 (313)
T 2h3h_A 15 WSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIA--EGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTDS 92 (313)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHH--TTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHH--cCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEeCCCC
Confidence 45556778888888898876421000000000000000001 2378888765322111 1121 223578888888542
Q ss_pred C---cccccccChHHHHH-HHHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH---
Q 042576 126 G---KLFLEEYDNKGMRE-TRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR--- 198 (313)
Q Consensus 126 ~---~~~~e~~d~~~~l~-~R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K--- 198 (313)
. .+.....|....-+ .=.+++++.. ..++||+|-|..+......-.+-.++-+++.|.+...+..+.-+++.
T Consensus 93 ~~~~~~~~V~~d~~~~g~~a~~~L~~~~~-G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~ 171 (313)
T 2h3h_A 93 PDSGRYVYIGTDNYQAGYTAGLIMKELLG-GKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVDILNDEEDGARAVS 171 (313)
T ss_dssp TTSCCSCEEECCHHHHHHHHHHHHHHHHT-SCSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEEEEECSSCHHHHHH
T ss_pred CCcceeEEECcCHHHHHHHHHHHHHHHcC-CCCEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEEeecCCCCHHHHHH
Confidence 2 23223344332211 1133555555 67899999988654433444555677778888876655555555432
Q ss_pred -----HhcCcCCccEEEEe
Q 042576 199 -----VALFEDSVDAWIQI 212 (313)
Q Consensus 199 -----Lanf~~~ID~fV~i 212 (313)
|...+ ++|+++..
T Consensus 172 ~~~~~l~~~~-~~~ai~~~ 189 (313)
T 2h3h_A 172 LAEAALNAHP-DLDAFFGV 189 (313)
T ss_dssp HHHHHHHHCT-TCCEEEEC
T ss_pred HHHHHHHHCc-CceEEEEc
Confidence 33345 68887754
No 13
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=81.44 E-value=13 Score=32.18 Aligned_cols=170 Identities=10% Similarity=-0.000 Sum_probs=83.4
Q ss_pred CeEEEEec------cccHhHHHHHHHHHHhCCCeEEecCCC-CCCCccccCCCCCCCCCCCCCCeEEEecCCcccH-HHH
Q 042576 38 GKLILAGT------IQFASAIRAAKPELEKQGFKVMIPQSK-PLSAGEVLGCTAPKIPARESDFNLVFIADGRFHL-EAF 109 (313)
Q Consensus 38 ~~i~Lv~t------iQf~~~l~~~~~~L~~~g~~v~ipq~~-pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHl-e~~ 109 (313)
.+|+++.. --|...++.+.+.+++.|+++.+-... ...+.+-...-...+. ..+|++|+.+...-.+ ..+
T Consensus 6 ~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgii~~~~~~~~~~~~~ 83 (289)
T 3brs_A 6 YYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIK--RKPDVILLAAADYEKTYDAA 83 (289)
T ss_dssp CEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHH--TCCSEEEECCSCTTTTHHHH
T ss_pred cEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHH--hCCCEEEEeCCChHHhHHHH
Confidence 35776632 234555677888888889987652210 0000000000000001 2378888765332121 222
Q ss_pred -HhhCCCceEEEeCCCCC---cccccccChHHHHHHH-HHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC
Q 042576 110 -MISNPGIKTFRYDPYLG---KLFLEEYDNKGMRETR-KRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGF 184 (313)
Q Consensus 110 -mi~np~~~~y~yDPys~---~~~~e~~d~~~~l~~R-~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gk 184 (313)
.+....+|++.+|-... .+.....|..+.-+.= .+++++.- ..+++|+|-|..+......-.+-.++-++++|.
T Consensus 84 ~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~~~~~L~~~~G-~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~ 162 (289)
T 3brs_A 84 KEIKDAGIKLIVIDSGMKQDIADITVATDNIQAGIRIGAVTKNLVR-KSGKIGVISFVKNSKTAMDREEGLKIGLSDDSN 162 (289)
T ss_dssp TTTGGGTCEEEEESSCCSSCCCSEEEECCHHHHHHHHHHHHHHHTS-SSCEEEEEESCTTSHHHHHHHHHHHHHHGGGGG
T ss_pred HHHHHCCCcEEEECCCCCCCcceEEEeeChHHHHHHHHHHHHHHcC-CCceEEEEECCCCCccHHHHHHHHHHHHHhCCC
Confidence 13345789988885432 1322334433322111 12222211 268999998875544334445556677778887
Q ss_pred cEEEEEeCCCCHHH--------HhcCcCCccEEEE
Q 042576 185 DYVVIMMSEISPAR--------VALFEDSVDAWIQ 211 (313)
Q Consensus 185 k~y~i~v~einp~K--------Lanf~~~ID~fV~ 211 (313)
....+..+..+++. |..-+ ++|+++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~ 196 (289)
T 3brs_A 163 KIEAIYYCDSNYDKAYDGTVELLTKYP-DISVMVG 196 (289)
T ss_dssp GEEEEEECTTCHHHHHHHHHHHHHHCT-TEEEEEE
T ss_pred cEEeeecCCCCHHHHHHHHHHHHHhCC-CceEEEE
Confidence 64434455555542 22234 5777664
No 14
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=80.72 E-value=24 Score=30.93 Aligned_cols=163 Identities=13% Similarity=0.153 Sum_probs=83.8
Q ss_pred eEEEEeccc---cHhHHHHHHHHHHhCCC---eEEe--cCC--CCCCCccccCCCCCCCCCCCCCCeEEEecCCcccHHH
Q 042576 39 KLILAGTIQ---FASAIRAAKPELEKQGF---KVMI--PQS--KPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEA 108 (313)
Q Consensus 39 ~i~Lv~tiQ---f~~~l~~~~~~L~~~g~---~v~i--pq~--~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~ 108 (313)
+|+++-++. |...++.+.+.|++.|| ++.+ -.. .+-..-+.+ ..+.. ..+|.+|.+|+.. ...
T Consensus 4 ~Igvi~~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~----~~l~~-~~vDgII~~~~~~--~~~ 76 (295)
T 3lft_A 4 KIGVLQFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMS----KQLVA-NGNDLVVGIATPA--AQG 76 (295)
T ss_dssp EEEEEECSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHH----HHHTT-SSCSEEEEESHHH--HHH
T ss_pred EEEEEEccCChhHHHHHHHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHH----HHHHh-cCCCEEEECCcHH--HHH
Confidence 577775443 56677889999999999 6432 111 110000000 00111 2479988876432 222
Q ss_pred HHhhCCCceEEEeC---CCCC-----------cccccccChHHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHH
Q 042576 109 FMISNPGIKTFRYD---PYLG-----------KLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILER 174 (313)
Q Consensus 109 ~mi~np~~~~y~yD---Pys~-----------~~~~e~~d~~~~l~~R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~ 174 (313)
+.-..+..|++-.+ |... .++-.. +.....+.=..+++... ..+++|+|.|... ......++-
T Consensus 77 ~~~~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~-~~~~~~~~~~~l~~~~p-g~~~I~~i~~~~~-~~~~~r~~g 153 (295)
T 3lft_A 77 LASATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVS-DHNPAQQQVELIKALTP-NVKTIGALYSSSE-DNSKTQVEE 153 (295)
T ss_dssp HHHHCSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEE-ECCCHHHHHHHHHHHCT-TCCEEEEEEETTC-HHHHHHHHH
T ss_pred HHHcCCCCCEEEEeccChhhcCccccccCCCCcEEEEE-CCccHHHHHHHHHHhCC-CCcEEEEEeCCCC-cchHHHHHH
Confidence 22234678877654 3211 111111 11111111122233323 5789999999843 334556778
Q ss_pred HHHHHHHcCCcEEEEEeCCCC--HHHHhcCcCCccEEEE
Q 042576 175 LQKRMEKKGFDYVVIMMSEIS--PARVALFEDSVDAWIQ 211 (313)
Q Consensus 175 l~~ll~~~Gkk~y~i~v~ein--p~KLanf~~~ID~fV~ 211 (313)
.++.+++.|.+.....+.... .+.+..+..++|+++.
T Consensus 154 ~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~~~~dai~~ 192 (295)
T 3lft_A 154 FKAYAEKAGLTVETFAVPSTNEIASTVTVMTSKVDAIWV 192 (295)
T ss_dssp HHHHHHHTTCEEEEEEESSGGGHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHcCCEEEEEecCCHHHHHHHHHHHHhcCCEEEE
Confidence 888899999887665554322 2233333226888765
No 15
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=80.04 E-value=28 Score=29.95 Aligned_cols=167 Identities=10% Similarity=0.049 Sum_probs=87.5
Q ss_pred CeEEEEecc---------ccHhHHHHHHHHHHhCCCeEEecCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCcccHHH
Q 042576 38 GKLILAGTI---------QFASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEA 108 (313)
Q Consensus 38 ~~i~Lv~ti---------Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~ 108 (313)
.+|+++..- -|...++.+.+.+++.|+++++-....-...|. -.- ..+.. ..+|++|+.+...-...-
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~-~~~-~~~~~-~~vdgiIi~~~~~~~~~~ 85 (292)
T 3k4h_A 9 KTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFN-GVV-KMVQG-RQIGGIILLYSRENDRII 85 (292)
T ss_dssp CEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHH-HHH-HHHHT-TCCCEEEESCCBTTCHHH
T ss_pred CEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHH-HHH-HHHHc-CCCCEEEEeCCCCChHHH
Confidence 457766432 345556778889999999977632211000000 000 00000 247998887543222111
Q ss_pred HHhhCCCceEEEeCCCCCc---ccccccChHHHHHHH-HHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC
Q 042576 109 FMISNPGIKTFRYDPYLGK---LFLEEYDNKGMRETR-KRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGF 184 (313)
Q Consensus 109 ~mi~np~~~~y~yDPys~~---~~~e~~d~~~~l~~R-~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gk 184 (313)
-.+....+|++.+|-.... +.....|....-+.= ..+++ + ..+++|+|.|..+......-.+-.++-++++|.
T Consensus 86 ~~l~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~--~-G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~ 162 (292)
T 3k4h_A 86 QYLHEQNFPFVLIGKPYDRKDEITYVDNDNYTAAREVAEYLIS--L-GHKQIAFIGGGSDLLVTRDRLAGMSDALKLADI 162 (292)
T ss_dssp HHHHHTTCCEEEESCCSSCTTTSCEEECCHHHHHHHHHHHHHH--T-TCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCCEEEECCCCCCCCCCCEEEECcHHHHHHHHHHHHH--C-CCceEEEEeCcccchhHHHHHHHHHHHHHHcCC
Confidence 1233457899888854322 333334433221111 11222 4 678999999886655445556667778888887
Q ss_pred cEE--EEEeCCCCHHH--------HhcCcCCccEEEE
Q 042576 185 DYV--VIMMSEISPAR--------VALFEDSVDAWIQ 211 (313)
Q Consensus 185 k~y--~i~v~einp~K--------Lanf~~~ID~fV~ 211 (313)
..- .+.-+..+.+. |...+ ++|+++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~ 198 (292)
T 3k4h_A 163 VLPKEYILHFDFSRESGQQAVEELMGLQQ-PPTAIMA 198 (292)
T ss_dssp CCCGGGEEECCSSHHHHHHHHHHHHTSSS-CCSEEEE
T ss_pred CCChheEEecCCCHHHHHHHHHHHHcCCC-CCcEEEE
Confidence 532 23345555432 33445 6898874
No 16
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=79.82 E-value=30 Score=30.09 Aligned_cols=162 Identities=10% Similarity=0.115 Sum_probs=89.2
Q ss_pred CeEEEEeccc---cHhHHHHHHHHHHhCCCeEEecCCCCCC-CccccCCCCCCCCCCCCCCeEEEecCCcccHHHH-Hhh
Q 042576 38 GKLILAGTIQ---FASAIRAAKPELEKQGFKVMIPQSKPLS-AGEVLGCTAPKIPARESDFNLVFIADGRFHLEAF-MIS 112 (313)
Q Consensus 38 ~~i~Lv~tiQ---f~~~l~~~~~~L~~~g~~v~ipq~~pls-~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~~-mi~ 112 (313)
..|+++.++. |...++.+.+.+++.|+++++-....-. .-+.+-- ... ..+|++|+.+... ..+.+ .+.
T Consensus 13 ~~Igvi~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~---l~~--~~vdgiIi~~~~~-~~~~~~~~~ 86 (289)
T 3k9c_A 13 RLLGVVFELQQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQA---LMR--ERCEAAILLGTRF-DTDELGALA 86 (289)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHH---HTT--TTEEEEEEETCCC-CHHHHHHHH
T ss_pred CEEEEEEecCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHH---HHh--CCCCEEEEECCCC-CHHHHHHHH
Confidence 4577665432 5556778889999999997663221100 1011100 011 2378988886432 22222 234
Q ss_pred CCCceEEEeCCCCC--cccccccChHHHHHH-HHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcE-EE
Q 042576 113 NPGIKTFRYDPYLG--KLFLEEYDNKGMRET-RKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDY-VV 188 (313)
Q Consensus 113 np~~~~y~yDPys~--~~~~e~~d~~~~l~~-R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~-y~ 188 (313)
. .+|++.+|-... .+.....|....-+. =.++++ + ..++||+|-|.... ....-.+-.++-++++|... ..
T Consensus 87 ~-~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~--~-G~~~I~~i~~~~~~-~~~~R~~Gf~~al~~~g~~~~~~ 161 (289)
T 3k9c_A 87 D-RVPALVVARASGLPGVGAVRGDDVAGITLAVDHLTE--L-GHRNIAHIDGADAP-GGADRRAGFLAAMDRHGLSASAT 161 (289)
T ss_dssp T-TSCEEEESSCCSSTTSEEEEECHHHHHHHHHHHHHH--T-TCCSEEEECCTTST-THHHHHHHHHHHHHHTTCGGGEE
T ss_pred c-CCCEEEEcCCCCCCCCCEEEeChHHHHHHHHHHHHH--C-CCCcEEEEeCCCCc-cHHHHHHHHHHHHHHCCCCCCcc
Confidence 4 889999885432 232223343322111 011222 4 67899999988754 45556667778889999772 13
Q ss_pred EEeCCCCHHH--------HhcCcCCccEEEE
Q 042576 189 IMMSEISPAR--------VALFEDSVDAWIQ 211 (313)
Q Consensus 189 i~v~einp~K--------Lanf~~~ID~fV~ 211 (313)
+..+..+.+. |..-+ ++|+++-
T Consensus 162 ~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~ 191 (289)
T 3k9c_A 162 VVTGGTTETEGAEGMHTLLEMPT-PPTAVVA 191 (289)
T ss_dssp EECCCSSHHHHHHHHHHHHTSSS-CCSEEEE
T ss_pred EEECCCCHHHHHHHHHHHHcCCC-CCCEEEE
Confidence 4456666543 33345 6898875
No 17
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=79.47 E-value=15 Score=31.97 Aligned_cols=170 Identities=7% Similarity=0.018 Sum_probs=85.1
Q ss_pred CCeEEEEecc----ccHhHHHHHHHHHHhCCCeEEe-cCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCcccH-HHH-
Q 042576 37 PGKLILAGTI----QFASAIRAAKPELEKQGFKVMI-PQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHL-EAF- 109 (313)
Q Consensus 37 ~~~i~Lv~ti----Qf~~~l~~~~~~L~~~g~~v~i-pq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHl-e~~- 109 (313)
.++|+++..- -|...++.+.+.+++.|+++++ ..... .+.+-...-...+. ..+|++|+.+...-.. ..+
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~i~~l~~--~~vdgiIi~~~~~~~~~~~~~ 80 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQY-DIQEQITVLEQAIA--KNPAGIAISAIDPVELTDTIN 80 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSS-CHHHHHHHHHHHHH--HCCSEEEECCSSTTTTHHHHH
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcC-CHHHHHHHHHHHHH--hCCCEEEEcCCCHHHHHHHHH
Confidence 4567766422 3555667788888888998765 21100 00000000000000 1378888775322111 111
Q ss_pred HhhCCCceEEEeCCCCC---cccccccChHHHHHH-HHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCc
Q 042576 110 MISNPGIKTFRYDPYLG---KLFLEEYDNKGMRET-RKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFD 185 (313)
Q Consensus 110 mi~np~~~~y~yDPys~---~~~~e~~d~~~~l~~-R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk 185 (313)
.+...++|++.+|-... .+.....|..+.-+. =.+++++.. ..+++|+|-|. +......-.+-.++-++++|.+
T Consensus 81 ~~~~~~iPvV~~~~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~-g~~~i~~i~~~-~~~~~~~R~~gf~~~l~~~~~~ 158 (305)
T 3g1w_A 81 KAVDAGIPIVLFDSGAPDSHAHSFLGTNNYNAGMNAAYKMAELLD-GEGEVAVITLP-NQLNHQERTTGFKETLEAEFPA 158 (305)
T ss_dssp HHHHTTCCEEEESSCCTTSCCSCEEECCHHHHHHHHHHHHHHHTT-TCEEEEEEECT-TCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHCCCcEEEECCCCCCCceeEEECcCHHHHHHHHHHHHHHHhC-CCcEEEEEeCC-CcccHHHHHHHHHHHHHhhCCC
Confidence 13335788888885432 233334454332211 123444444 66889999875 2223333444566677788766
Q ss_pred EEE--EEeCCCCHHH--------HhcCcCCccEEEEe
Q 042576 186 YVV--IMMSEISPAR--------VALFEDSVDAWIQI 212 (313)
Q Consensus 186 ~y~--i~v~einp~K--------Lanf~~~ID~fV~i 212 (313)
.-. +..+.-+++. |...+ ++|+++..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~~ 194 (305)
T 3g1w_A 159 IEVIAVEDGRGDSLHSRRVAHQLLEDYP-NLAGIFAT 194 (305)
T ss_dssp EEEEEEEECTTCHHHHHHHHHHHHHHCT-TEEEEEES
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCC-CceEEEEC
Confidence 544 3445666543 33445 68887643
No 18
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=78.65 E-value=6.6 Score=34.94 Aligned_cols=82 Identities=13% Similarity=0.111 Sum_probs=57.3
Q ss_pred HhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEe---------CCCCHHHHh----c-C--cCCccEEEEe
Q 042576 149 AMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMM---------SEISPARVA----L-F--EDSVDAWIQI 212 (313)
Q Consensus 149 ak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v---------~einp~KLa----n-f--~~~ID~fV~i 212 (313)
+. .++++||+ +| +...+-+.+++.|+++|.++....- ++++++.+. . + ..++|+.| +
T Consensus 114 ~~-g~~rvgll-tp----y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaiv-L 186 (240)
T 3ixl_A 114 AL-GVRRVALA-TA----YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGIL-L 186 (240)
T ss_dssp HT-TCSEEEEE-ES----SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEE-E
T ss_pred Hh-CCCEEEEE-eC----ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEE-E
Confidence 45 78999987 56 4566678899999999998766542 345555443 1 2 12588865 5
Q ss_pred cCCCccccc-----cCCCCCcccCHHHHHH
Q 042576 213 ACPRLSIDW-----GDAFTKPLLTPFEAEI 237 (313)
Q Consensus 213 aCPrlsid~-----~~~f~kPvLTPyE~~v 237 (313)
+|=.++... ..++.+||+++-++.+
T Consensus 187 ~CT~l~~l~~i~~le~~lg~PVids~~a~~ 216 (240)
T 3ixl_A 187 SSGGLLTLDAIPEVERRLGVPVVSSSPAGF 216 (240)
T ss_dssp ECTTSCCTTHHHHHHHHHSSCEEEHHHHHH
T ss_pred eCCCCchhhhHHHHHHHhCCCEEeHHHHHH
Confidence 599987653 5678899999987744
No 19
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=78.58 E-value=7.4 Score=30.19 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=42.3
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEecCCC
Q 042576 156 WGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPR 216 (313)
Q Consensus 156 ~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~iaCPr 216 (313)
+.||.+|.. -+...+++.|.+.+++.|.++-++-+.+..+++|.. .|. |++++|-
T Consensus 2 i~iiy~S~t-GnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~l~~----~d~-vi~g~p~ 56 (137)
T 2fz5_A 2 VEIVYWSGT-GNTEAMANEIEAAVKAAGADVESVRFEDTNVDDVAS----KDV-ILLGCPA 56 (137)
T ss_dssp EEEEECCSS-SHHHHHHHHHHHHHHHTTCCEEEEETTSCCHHHHHT----CSE-EEEECCC
T ss_pred EEEEEECCC-ChHHHHHHHHHHHHHhCCCeEEEEEcccCCHHHHhc----CCE-EEEEccc
Confidence 568888864 335679999999999999999899999988877654 455 4556774
No 20
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=78.57 E-value=30 Score=29.47 Aligned_cols=164 Identities=11% Similarity=0.064 Sum_probs=82.5
Q ss_pred CeEEEEec-c---ccHhHHHHHHHHHHhCCCeEEecCCCCCCCcc--ccCCCCCCCCCCCCCCeEEEecCCcccHHHHHh
Q 042576 38 GKLILAGT-I---QFASAIRAAKPELEKQGFKVMIPQSKPLSAGE--VLGCTAPKIPARESDFNLVFIADGRFHLEAFMI 111 (313)
Q Consensus 38 ~~i~Lv~t-i---Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~Ge--vLGCt~~~~~~~~~~d~iv~igdGrFHle~~mi 111 (313)
.+|+++.. + -|...++.+.+.+++.|+++++-....-...| .+- .... ..+|++|+.+...-...--.+
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~l~~--~~vdgii~~~~~~~~~~~~~l 78 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLS---TFLE--SRPAGVVLFGSEHSQRTHQLL 78 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEECTTCHHHHHHHHH---HHHT--SCCCCEEEESSCCCHHHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHH---HHHh--cCCCEEEEeCCCCCHHHHHHH
Confidence 35776642 2 34556677888899999987642111000000 000 0001 237888877643211111123
Q ss_pred hCCCceEEEeCCCCC--cccccccChHHHHHHHHHHHHHH--hhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEE
Q 042576 112 SNPGIKTFRYDPYLG--KLFLEEYDNKGMRETRKRAIEKA--MKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYV 187 (313)
Q Consensus 112 ~np~~~~y~yDPys~--~~~~e~~d~~~~l~~R~~~I~ka--k~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y 187 (313)
...++|++.+|.... .+.....|..+.- |. +.+.. + ..+++|+|.|..+......-.+-.++-++++|.+.-
T Consensus 79 ~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~--~~-a~~~L~~~-G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 154 (275)
T 3d8u_A 79 EASNTPVLEIAELSSKASYLNIGVDHFEVG--KA-CTRHLIEQ-GFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPD 154 (275)
T ss_dssp HHHTCCEEEESSSCSSSSSEEECBCHHHHH--HH-HHHHHHTT-TCCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HhCCCCEEEEeeccCCCCCCEEEEChHHHH--HH-HHHHHHHC-CCCeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCC
Confidence 334788888885422 2322334433221 21 12222 3 568999998876544444455566777888886532
Q ss_pred --EEEeCCCCHHH--------HhcCcCCccEEEE
Q 042576 188 --VIMMSEISPAR--------VALFEDSVDAWIQ 211 (313)
Q Consensus 188 --~i~v~einp~K--------Lanf~~~ID~fV~ 211 (313)
.+..+..+++. |...+ ++|+++.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~ 187 (275)
T 3d8u_A 155 HFLTTHEAPSSQLGAEGLAKLLLRDS-SLNALVC 187 (275)
T ss_dssp CEEECSSCCCHHHHHHHHHHHHTTCT-TCCEEEE
T ss_pred ccEEEeCCCChhHHHHHHHHHHhCCC-CCCEEEE
Confidence 22235555542 23334 5888764
No 21
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=78.40 E-value=14 Score=31.75 Aligned_cols=162 Identities=13% Similarity=0.061 Sum_probs=82.1
Q ss_pred CeEEEEec----cccHhHHHHHHHHHHhCCCeEEecCCCCCCCcc--ccCCCCCCCCCCCCCCeEEEecCCcccHHHH--
Q 042576 38 GKLILAGT----IQFASAIRAAKPELEKQGFKVMIPQSKPLSAGE--VLGCTAPKIPARESDFNLVFIADGRFHLEAF-- 109 (313)
Q Consensus 38 ~~i~Lv~t----iQf~~~l~~~~~~L~~~g~~v~ipq~~pls~Ge--vLGCt~~~~~~~~~~d~iv~igdGrFHle~~-- 109 (313)
.+|+++.. --|...++.+.+.+++.|+++++-....-...| .+- .... ..+|++|+.+ .+...+
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~l~~--~~~dgiIi~~---~~~~~~~~ 80 (277)
T 3e61_A 9 KLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLA---TFVS--HNCTGMISTA---FNENIIEN 80 (277)
T ss_dssp -CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHH---HHHH--TTCSEEEECG---GGHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHH---HHHh--CCCCEEEEec---CChHHHHH
Confidence 34776642 235555677888999999987652211100000 000 0001 2379988876 232222
Q ss_pred HhhCCCceEEEeCCCCCcccccccChHHHHHHHHHHHH-HHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEE
Q 042576 110 MISNPGIKTFRYDPYLGKLFLEEYDNKGMRETRKRAIE-KAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVV 188 (313)
Q Consensus 110 mi~np~~~~y~yDPys~~~~~e~~d~~~~l~~R~~~I~-kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~ 188 (313)
.+....+|++.+|-..........|.... -|..+=. ..+ ..+++|+|.|..+......-.+-.++-++++|.+...
T Consensus 81 ~l~~~~iPvV~~~~~~~~~~~V~~D~~~~--g~~a~~~L~~~-G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~ 157 (277)
T 3e61_A 81 TLTDHHIPFVFIDRINNEHNGISTNHFKG--GQLQAEVVRKG-KGKNVLIVHENLLIDAFHQRVQGIKYILDQQRIDYKM 157 (277)
T ss_dssp HHHHC-CCEEEGGGCC---------HHHH--HHHHHHHHHHT-TCCSEEEEESCTTSHHHHHHHHHHHHHHHC---CEEE
T ss_pred HHHcCCCCEEEEeccCCCCCeEEechHHH--HHHHHHHHHHC-CCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCCCccc
Confidence 24445789998885543222222332222 1211111 113 6689999999866555555666677888888988765
Q ss_pred EEeCCCCHHH----HhcCcCCccEEEE
Q 042576 189 IMMSEISPAR----VALFEDSVDAWIQ 211 (313)
Q Consensus 189 i~v~einp~K----Lanf~~~ID~fV~ 211 (313)
+..+..+.+. |...+ ++|+++.
T Consensus 158 ~~~~~~~~~~~~~~l~~~~-~~~ai~~ 183 (277)
T 3e61_A 158 LEATLLDNDKKFIDLIKEL-SIDSIIC 183 (277)
T ss_dssp EEGGGGGSHHHHHHHHHHH-TCCEEEE
T ss_pred eecCCCCHHHHHHHhhcCC-CCCEEEE
Confidence 5555544332 34445 6888875
No 22
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=78.20 E-value=26 Score=29.81 Aligned_cols=151 Identities=9% Similarity=0.032 Sum_probs=80.2
Q ss_pred eEEEEec-c---ccHhHHHHHHHHHHhCCCeEEecCCCCCCCcc--ccCCCCCCCCCCCCCCeEEEecCCccc--HHHHH
Q 042576 39 KLILAGT-I---QFASAIRAAKPELEKQGFKVMIPQSKPLSAGE--VLGCTAPKIPARESDFNLVFIADGRFH--LEAFM 110 (313)
Q Consensus 39 ~i~Lv~t-i---Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~Ge--vLGCt~~~~~~~~~~d~iv~igdGrFH--le~~m 110 (313)
+|+++.. . -|...++.+.+.+++.|+++++-....-...| .+. .... ..+|++|+.+..... ... .
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~---~l~~--~~vdgiIi~~~~~~~~~~~~-~ 77 (272)
T 3o74_A 4 TLGFILPDLENPSYARIAKQLEQGARARGYQLLIASSDDQPDSERQLQQ---LFRA--RRCDALFVASCLPPEDDSYR-E 77 (272)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHH---HHHH--TTCSEEEECCCCCSSCCHHH-H
T ss_pred EEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHH---HHHH--cCCCEEEEecCccccHHHHH-H
Confidence 4665532 2 24555677888888899987652211000000 000 0001 237888876543111 112 2
Q ss_pred hhCCCceEEEeCCCCCc--ccccccChHHHHHHHHHHHHHHh-hcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEE
Q 042576 111 ISNPGIKTFRYDPYLGK--LFLEEYDNKGMRETRKRAIEKAM-KEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYV 187 (313)
Q Consensus 111 i~np~~~~y~yDPys~~--~~~e~~d~~~~l~~R~~~I~kak-~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y 187 (313)
+...++|++.+|-.... +.....|....- |. +.+... ...+++|+|.|..+......-.+-.++-++++|.+..
T Consensus 78 ~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~--~~-a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~ 154 (272)
T 3o74_A 78 LQDKGLPVIAIDRRLDPAHFCSVISDDRDAS--RQ-LAASLLSSAPRSIALIGARPELSVSQARAGGFDEALQGYTGEVR 154 (272)
T ss_dssp HHHTTCCEEEESSCCCTTTCEEEEECHHHHH--HH-HHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHTTTCCSEEE
T ss_pred HHHcCCCEEEEccCCCccccCEEEEchHHHH--HH-HHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHHHHcCCChh
Confidence 33357888888854321 222233433221 21 222222 1568999999887655555556667777888898877
Q ss_pred EEEeCCCCHHH
Q 042576 188 VIMMSEISPAR 198 (313)
Q Consensus 188 ~i~v~einp~K 198 (313)
.+..+..+++.
T Consensus 155 ~~~~~~~~~~~ 165 (272)
T 3o74_A 155 RYQGEAFSREC 165 (272)
T ss_dssp EEEESSSSHHH
T ss_pred eeecCCCCHHH
Confidence 77777777543
No 23
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=78.14 E-value=11 Score=33.05 Aligned_cols=165 Identities=14% Similarity=0.116 Sum_probs=86.9
Q ss_pred CeEEEEec-----c---ccHhHHHHHHHHHHhCCCeEEecCCCC-CCCccccCCCCCCCCCCCCCCeEEEecCCcccHHH
Q 042576 38 GKLILAGT-----I---QFASAIRAAKPELEKQGFKVMIPQSKP-LSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEA 108 (313)
Q Consensus 38 ~~i~Lv~t-----i---Qf~~~l~~~~~~L~~~g~~v~ipq~~p-ls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~ 108 (313)
..|+++.. + -|...++.+.+.+++.|+.+++-.... ...-+++. .+.. ..+|++|+.+...-...-
T Consensus 7 ~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~----~l~~-~~vdGiIi~~~~~~~~~~ 81 (294)
T 3qk7_A 7 DAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIH----LVET-RRVDALIVAHTQPEDFRL 81 (294)
T ss_dssp CEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHH----HHHH-TCCSEEEECSCCSSCHHH
T ss_pred ceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHH----HHHc-CCCCEEEEeCCCCChHHH
Confidence 45776653 3 355667788899999999977532211 00000000 0000 247999887643222111
Q ss_pred HHhhCCCceEEEeCCCC--CcccccccChHHHHHH-HHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCc
Q 042576 109 FMISNPGIKTFRYDPYL--GKLFLEEYDNKGMRET-RKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFD 185 (313)
Q Consensus 109 ~mi~np~~~~y~yDPys--~~~~~e~~d~~~~l~~-R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk 185 (313)
-.+..-.+|++.+|-.. ..+.....|....-+. =.++++ + ..++||+|.|..+......-.+-.++-++++|.+
T Consensus 82 ~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~--~-G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~ 158 (294)
T 3qk7_A 82 QYLQKQNFPFLALGRSHLPKPYAWFDFDNHAGASLAVKRLLE--L-GHQRIAFVSTDARISYVDQRLQGYVQTMSEAGLM 158 (294)
T ss_dssp HHHHHTTCCEEEESCCCCSSCCEEEEECHHHHHHHHHHHHHH--T-TCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHhCCCCEEEECCCCCCCCCCEEEcChHHHHHHHHHHHHH--C-CCceEEEEeCCcccchHHHHHHHHHHHHHHCCCC
Confidence 12334478999888642 2232223343322111 011222 3 6789999999875544445566667778888866
Q ss_pred EE--EEEeCCCCHHH--------HhcCcCCccEEEE
Q 042576 186 YV--VIMMSEISPAR--------VALFEDSVDAWIQ 211 (313)
Q Consensus 186 ~y--~i~v~einp~K--------Lanf~~~ID~fV~ 211 (313)
.- .+..+..+.+. |+.-+ ++|+++-
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~ 193 (294)
T 3qk7_A 159 PLAGYLQKADPTRPGGYLAASRLLALEV-PPTAIIT 193 (294)
T ss_dssp CCTTCEEEECSSHHHHHHHHHHHHHSSS-CCSEEEE
T ss_pred CChhHeecCCCCHHHHHHHHHHHHcCCC-CCcEEEE
Confidence 32 23345555432 33334 6888774
No 24
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=76.65 E-value=24 Score=30.31 Aligned_cols=158 Identities=17% Similarity=0.124 Sum_probs=80.2
Q ss_pred cHhHHHHHHHHHHhCCCeEEecCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCcccH-HHH-HhhCCCceEEEeCCCC
Q 042576 48 FASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHL-EAF-MISNPGIKTFRYDPYL 125 (313)
Q Consensus 48 f~~~l~~~~~~L~~~g~~v~ipq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHl-e~~-mi~np~~~~y~yDPys 125 (313)
|...++.+.+.++++|+++++.....-...|. ..-...+. ..+|++++.+...-.. ..+ .+....+|++.+|-..
T Consensus 16 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~-~~i~~l~~--~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~i~~~~ 92 (271)
T 2dri_A 16 FVSLKDGAQKEADKLGYNLVVLDSQNNPAKEL-ANVQDLTV--RGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQA 92 (271)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECTTCHHHHH-HHHHHHTT--TTEEEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHHHHHHHHcCcEEEEeCCCCCHHHHH-HHHHHHHH--cCCCEEEEeCCChHHHHHHHHHHHHCCCcEEEecCCC
Confidence 55567778888999999976632110000000 00000011 1378888765321111 112 1333478999888543
Q ss_pred Cc---ccccccChHHHH-HHHHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH---
Q 042576 126 GK---LFLEEYDNKGMR-ETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR--- 198 (313)
Q Consensus 126 ~~---~~~e~~d~~~~l-~~R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K--- 198 (313)
.. ......|....- ..=.+++++.. ..+++++|-|..+......-.+-.++-++++|.+......+..+.+.
T Consensus 93 ~~~~~~~~V~~D~~~~g~~a~~~L~~~g~-g~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~ 171 (271)
T 2dri_A 93 TKGEVVSHIASDNVLGGKIAGDYIAKKAG-EGAKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPADFDRIKGLN 171 (271)
T ss_dssp SSSCCSEEEEECHHHHHHHHHHHHHHHHC-TTCEEEEEECCTTCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCHHHHHH
T ss_pred CCCceeEEEecChHHHHHHHHHHHHHHcC-CCCeEEEEECCCCCccHhHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHH
Confidence 21 112233432221 11123444443 45799999887654433444455677788889876544456666543
Q ss_pred -----HhcCcCCccEEE
Q 042576 199 -----VALFEDSVDAWI 210 (313)
Q Consensus 199 -----Lanf~~~ID~fV 210 (313)
|...+ ++|+++
T Consensus 172 ~~~~ll~~~~-~~~ai~ 187 (271)
T 2dri_A 172 VMQNLLTAHP-DVQAVF 187 (271)
T ss_dssp HHHHHHHHCT-TCCEEE
T ss_pred HHHHHHHhCC-CccEEE
Confidence 23334 577755
No 25
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=76.50 E-value=4.6 Score=35.76 Aligned_cols=64 Identities=14% Similarity=0.169 Sum_probs=46.5
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH----HhcC-cCCccEEEEecCCC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR----VALF-EDSVDAWIQIACPR 216 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K----Lanf-~~~ID~fV~iaCPr 216 (313)
..++||+|+..+.-..+..+++-+++.++++|....++.... ++++ +..+ ...+|.+|+.++..
T Consensus 14 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiI~~~~~~ 82 (303)
T 3kke_A 14 RSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQIDA-PPRGTQQLSRLVSEGRVDGVLLQRRED 82 (303)
T ss_dssp ---CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECCS-TTHHHHHHHHHHHSCSSSEEEECCCTT
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCCC-ChHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 567899999999888899999999999999999887665543 3322 2222 12599999987654
No 26
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=76.25 E-value=34 Score=29.57 Aligned_cols=140 Identities=14% Similarity=0.151 Sum_probs=72.2
Q ss_pred CeEEEEec-c---ccHhHHHHHHHHHHhCCCeEEecCCC--CCCCccccCCCCCCCCCCCCCCeEEEecCCcccHHHH-H
Q 042576 38 GKLILAGT-I---QFASAIRAAKPELEKQGFKVMIPQSK--PLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAF-M 110 (313)
Q Consensus 38 ~~i~Lv~t-i---Qf~~~l~~~~~~L~~~g~~v~ipq~~--pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~~-m 110 (313)
.+|+++.. + -|...++.+.+.+++.|+++++-... +...-+.+- .... ..+|++|+.+.. +.-..+ .
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~l~~--~~vdgiI~~~~~-~~~~~~~~ 82 (285)
T 3c3k_A 9 GMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLT---LLSG--KMVDGVITMDAL-SELPELQN 82 (285)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTH---HHHT--TCCSEEEECCCG-GGHHHHHH
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHH---HHHh--CCCCEEEEeCCC-CChHHHHH
Confidence 45777642 2 34555677888899999997652211 000000000 0001 237898876532 211111 2
Q ss_pred hhCCCceEEEeCCCCC--cccccccChHHHHHH-HHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEE
Q 042576 111 ISNPGIKTFRYDPYLG--KLFLEEYDNKGMRET-RKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYV 187 (313)
Q Consensus 111 i~np~~~~y~yDPys~--~~~~e~~d~~~~l~~-R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y 187 (313)
+. ..+|++.+|.... .+.....|....-+. =.++++ + ..+++|+|.|..+......-.+-.++-++++|.+..
T Consensus 83 l~-~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~--~-G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 158 (285)
T 3c3k_A 83 II-GAFPWVQCAEYDPLSTVSSVSIDDVAASEYVVDQLVK--S-GKKRIALINHDLAYQYAQHRESGYLNRLKFHGLDYS 158 (285)
T ss_dssp HH-TTSSEEEESSCCTTSSSCEEECCHHHHHHHHHHHHHH--T-TCCCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCC
T ss_pred Hh-cCCCEEEEccccCCCCCCEEEEChHHHHHHHHHHHHH--c-CCCeEEEEeCCCccccHHHHHHHHHHHHHHcCCCce
Confidence 34 5789998885432 222233443322111 011222 3 568999999876543333445556777888887654
No 27
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=76.12 E-value=6.1 Score=34.46 Aligned_cols=63 Identities=16% Similarity=0.270 Sum_probs=47.7
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHH----hcC-cCCccEEEEecCC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARV----ALF-EDSVDAWIQIACP 215 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KL----anf-~~~ID~fV~iaCP 215 (313)
..++||+|+..+.-..+..+++.+++.++++|.+..++.... ++++. ..+ ...+|++|+.+..
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAE-DIVREREAVGQFFERRVDGLILAPSE 74 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECCCS
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 678999999998877888999999999999998877665443 54432 222 1259999987764
No 28
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=75.86 E-value=3.7 Score=32.83 Aligned_cols=58 Identities=19% Similarity=0.322 Sum_probs=43.1
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEecCCC
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPR 216 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~iaCPr 216 (313)
+++.||.+|..+ +...+++.|.+.|++.|.++-++-+.+..+..|.. +.|. |+++||-
T Consensus 2 ~ki~I~y~S~tG-nT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l~~---~~d~-ii~g~pt 59 (148)
T 3f6r_A 2 SKVLIVFGSSTG-NTESIAQKLEELIAAGGHEVTLLNAADASAENLAD---GYDA-VLFGCSA 59 (148)
T ss_dssp CEEEEEEECSSS-HHHHHHHHHHHHHHTTTCEEEEEETTTBCCTTTTT---TCSE-EEEEECE
T ss_pred CeEEEEEECCCc-hHHHHHHHHHHHHHhCCCeEEEEehhhCCHhHhcc---cCCE-EEEEecc
Confidence 367899999753 45679999999999999998899888887666541 2454 4556664
No 29
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=75.84 E-value=4.5 Score=31.85 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=41.8
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEecCCC
Q 042576 156 WGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPR 216 (313)
Q Consensus 156 ~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~iaCPr 216 (313)
+.|+-+|..+ +...+++.|.+.|+++|.++-++-+.+.+++.|.. .|.+ +++||-
T Consensus 1 i~I~Y~S~tG-nT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~l~~----~d~i-iig~pt 55 (138)
T 5nul_A 1 MKIVYWSGTG-NTEKMAELIAKGIIESGKDVNTINVSDVNIDELLN----EDIL-ILGCSA 55 (138)
T ss_dssp CEEEEECSSS-HHHHHHHHHHHHHHHTTCCCEEEEGGGCCHHHHTT----CSEE-EEEECC
T ss_pred CEEEEECCCc-hHHHHHHHHHHHHHHCCCeEEEEEhhhCCHHHHhh----CCEE-EEEcCc
Confidence 3578888642 45679999999999999999999999999887654 4554 455663
No 30
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=75.19 E-value=20 Score=30.75 Aligned_cols=159 Identities=9% Similarity=0.006 Sum_probs=84.7
Q ss_pred CeEEEEe-cc---ccHhHHHHHHHHHHhCCCeEEecCCC-CCCCccccCCCCCCCCCCCCCCeEEEecCCcccHHHHHhh
Q 042576 38 GKLILAG-TI---QFASAIRAAKPELEKQGFKVMIPQSK-PLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMIS 112 (313)
Q Consensus 38 ~~i~Lv~-ti---Qf~~~l~~~~~~L~~~g~~v~ipq~~-pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~~mi~ 112 (313)
.+|+++. +. -|...++.+.+.+++.|+++++-... +...-+.+-- ... ..+|++| ++... ....+..
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~---l~~--~~vdgiI-~~~~~-~~~~~~~- 77 (280)
T 3gyb_A 6 QLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSLTSQAGTDPITS---ALS--MRPDGII-IAQDI-PDFTVPD- 77 (280)
T ss_dssp CEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSSSSCSSSCHHHH---HHT--TCCSEEE-EESCC---------
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCCCchHHHHHHHH---HHh--CCCCEEE-ecCCC-ChhhHhh-
Confidence 4577664 22 35666778889999999997763221 1000001000 001 2479999 76432 2222222
Q ss_pred CCCceEEEeCCCC---CcccccccChHHHHHHHHHHHH-HHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEE
Q 042576 113 NPGIKTFRYDPYL---GKLFLEEYDNKGMRETRKRAIE-KAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVV 188 (313)
Q Consensus 113 np~~~~y~yDPys---~~~~~e~~d~~~~l~~R~~~I~-kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~ 188 (313)
..+|++.+|-.. ..+.....|....- |..+=. ..+ ..+++++|.|..+. ...-.+-.++.++++|.+...
T Consensus 78 -~~iPvV~~~~~~~~~~~~~~V~~D~~~~g--~~a~~~L~~~-G~~~i~~i~~~~~~--~~~R~~gf~~~l~~~~~~~~~ 151 (280)
T 3gyb_A 78 -SLPPFVIAGTRITQASTHDSVANDDFRGA--EIATKHLIDL-GHTHIAHLRVGSGA--GLRRFESFEATMRAHGLEPLS 151 (280)
T ss_dssp --CCCEEEESCCCSSSCSTTEEEECHHHHH--HHHHHHHHHT-TCCSEEEECCSSHH--HHHHHHHHHHHHHHTTCCCEE
T ss_pred -cCCCEEEECCCCCCCCCCCEEEechHHHH--HHHHHHHHHC-CCCeEEEEeCCCch--HHHHHHHHHHHHHHcCcCCCc
Confidence 578999888654 23333334433221 211111 113 67899999887665 555566677788888877652
Q ss_pred -EEeCCCCHHH--------HhcCcCCccEEEE
Q 042576 189 -IMMSEISPAR--------VALFEDSVDAWIQ 211 (313)
Q Consensus 189 -i~v~einp~K--------Lanf~~~ID~fV~ 211 (313)
+..+..+.+. |...+ ++|+++.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~ 182 (280)
T 3gyb_A 152 NDYLGPAVEHAGYTETLALLKEHP-EVTAIFS 182 (280)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCT-TCCEEEE
T ss_pred ccccCCCCHHHHHHHHHHHHhCCC-CCCEEEE
Confidence 3445555432 33445 6898875
No 31
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=74.98 E-value=5.8 Score=35.90 Aligned_cols=73 Identities=11% Similarity=0.187 Sum_probs=52.9
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHH----hcC-cCCccEEEEecCCCccccccCCCC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARV----ALF-EDSVDAWIQIACPRLSIDWGDAFT 226 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KL----anf-~~~ID~fV~iaCPrlsid~~~~f~ 226 (313)
..++||+|+..+.-..+..+++.+++.++++|....++.... +++. ..+ ...+|.+|+.+. +..-..-.
T Consensus 63 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~~~~~~~~~~l~~~~vdGiIi~~~----~~~~~~~~ 136 (333)
T 3jvd_A 63 RSALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEANS--VQAQDVVMESLISIQAAGIIHVPV----VGSIAPEG 136 (333)
T ss_dssp -CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECCS--HHHHHHHHHHHHHHTCSEEEECCC----TTCCC-CC
T ss_pred CCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEECCCC--hHHHHHHHHHHHhCCCCEEEEcch----HHHHhhCC
Confidence 567999999998888888999999999999999888777766 4432 222 114999998776 44444445
Q ss_pred Cccc
Q 042576 227 KPLL 230 (313)
Q Consensus 227 kPvL 230 (313)
.|++
T Consensus 137 iPvV 140 (333)
T 3jvd_A 137 IPMV 140 (333)
T ss_dssp SCEE
T ss_pred CCEE
Confidence 5654
No 32
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=73.58 E-value=4.4 Score=32.24 Aligned_cols=56 Identities=13% Similarity=0.201 Sum_probs=41.9
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCC-ccEEEEecCCC
Q 042576 155 TWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDS-VDAWIQIACPR 216 (313)
Q Consensus 155 ~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~-ID~fV~iaCPr 216 (313)
++.||.+|..+ +...+++.|.+.+++.|.++.++-+.+.++.. +. + .|.+|+ +||-
T Consensus 2 ki~iiy~S~~G-nt~~~a~~i~~~l~~~g~~v~~~~~~~~~~~~---l~-~~~d~ii~-~~p~ 58 (147)
T 1f4p_A 2 KALIVYGSTTG-NTEYTAETIARELADAGYEVDSRDAASVEAGG---LF-EGFDLVLL-GCST 58 (147)
T ss_dssp EEEEEEECSSS-HHHHHHHHHHHHHHHHTCEEEEEEGGGCCSTT---TT-TTCSEEEE-EECE
T ss_pred eEEEEEECCcC-HHHHHHHHHHHHHHhcCCeeEEEehhhCCHHH---hc-CcCCEEEE-EeCC
Confidence 57788999864 46789999999999999988888888876543 44 4 666554 5664
No 33
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=73.50 E-value=4.8 Score=34.52 Aligned_cols=62 Identities=24% Similarity=0.445 Sum_probs=46.7
Q ss_pred CCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHh----cC-cCCccEEEEecCC
Q 042576 153 ARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVA----LF-EDSVDAWIQIACP 215 (313)
Q Consensus 153 A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLa----nf-~~~ID~fV~iaCP 215 (313)
.++||+|+.++....+..+++.+++.++++|.+..++... -++++.. .+ ...+|++|+.+..
T Consensus 2 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~ 68 (272)
T 3o74_A 2 TRTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASSD-DQPDSERQLQQLFRARRCDALFVASCL 68 (272)
T ss_dssp CCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred ceEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEEecCc
Confidence 5789999999988888899999999999999987766544 3554422 22 1259999987664
No 34
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=72.85 E-value=14 Score=33.42 Aligned_cols=81 Identities=19% Similarity=0.181 Sum_probs=56.2
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCC---------CHHHHhcC-----cCCccEEEEecCCCc
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEI---------SPARVALF-----EDSVDAWIQIACPRL 217 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~ei---------np~KLanf-----~~~ID~fV~iaCPrl 217 (313)
.+++|||| ++.. ..+-+.+++.+++.|.++..+.-.++ +++.+... .++.|+.|+=||=.+
T Consensus 145 g~~rvgvl-tp~~----~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaIvLg~CT~l 219 (273)
T 2xed_A 145 DAQRVALV-TPYM----RPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVISCAVQM 219 (273)
T ss_dssp TCCEEEEE-ECSC----HHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEEEEESSSSS
T ss_pred CCCeEEEE-cCCh----hhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEEEEcCCCCc
Confidence 67899999 4533 44555888999999999766544333 45544321 126899888779999
Q ss_pred ccc---c--cCCCCCcccCHHHHHH
Q 042576 218 SID---W--GDAFTKPLLTPFEAEI 237 (313)
Q Consensus 218 sid---~--~~~f~kPvLTPyE~~v 237 (313)
+.. . ..++.+||+++-++.+
T Consensus 220 ~~~~~~~~le~~lg~PVids~~a~a 244 (273)
T 2xed_A 220 PSLPLVETAEREFGIPVLSAATAGA 244 (273)
T ss_dssp CCTTHHHHHHHHHSSCEEEHHHHHH
T ss_pred chHHhHHHHHHHhCCCEEcHHHHHH
Confidence 863 2 3357899999998765
No 35
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=72.43 E-value=52 Score=29.21 Aligned_cols=164 Identities=14% Similarity=0.090 Sum_probs=86.9
Q ss_pred CeEEEEecc------ccHhHHHHHHHHHHhCCCeEEecCCCCCCCcc--ccCCCCCCCCCCCCCCeEEEecCCcccHHH-
Q 042576 38 GKLILAGTI------QFASAIRAAKPELEKQGFKVMIPQSKPLSAGE--VLGCTAPKIPARESDFNLVFIADGRFHLEA- 108 (313)
Q Consensus 38 ~~i~Lv~ti------Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~Ge--vLGCt~~~~~~~~~~d~iv~igdGrFHle~- 108 (313)
.+|+++..- -|...++.+.+.+++.|+++++-....-...| .+. .... ..+|++|+.+...-...-
T Consensus 62 ~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~---~l~~--~~vdgiIi~~~~~~~~~~~ 136 (338)
T 3dbi_A 62 QTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQ---YLLD--LRCDAIMIYPRFLSVDEID 136 (338)
T ss_dssp SEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHH---HHHH--TTCSEEEECCSSSCHHHHH
T ss_pred CEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHH---HHHh--CCCCEEEEeCCCCChHHHH
Confidence 458876432 34566788889999999997653211100000 000 0001 137998887643222111
Q ss_pred HHhhCCCceEEEeCCCCCc--ccccccChHHHHHHHHHHHHH--HhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC
Q 042576 109 FMISNPGIKTFRYDPYLGK--LFLEEYDNKGMRETRKRAIEK--AMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGF 184 (313)
Q Consensus 109 ~mi~np~~~~y~yDPys~~--~~~e~~d~~~~l~~R~~~I~k--ak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gk 184 (313)
-.+....+|++.+|-.... +.....|.... -|. +.+. .+ ..+++|+|.|..+......-.+-.++-++++|.
T Consensus 137 ~~~~~~~iPvV~~~~~~~~~~~~~V~~D~~~~--~~~-a~~~L~~~-G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~ 212 (338)
T 3dbi_A 137 DIIDAHSQPIMVLNRRLRKNSSHSVWCDHKQT--SFN-AVAELINA-GHQEIAFLTGSMDSPTSIERLAGYKDALAQHGI 212 (338)
T ss_dssp HHHHHCSSCEEEESSCCSSSGGGEECBCHHHH--HHH-HHHHHHHT-TCCSEEEECCCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCCCEEEEcCCCCCCCCCEEEEChHHH--HHH-HHHHHHHC-CCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCC
Confidence 1233346788888854332 22223343222 121 1111 23 668999998876544444555667778888887
Q ss_pred cEE--EEEeCCCCHHH--------HhcCcCCccEEEE
Q 042576 185 DYV--VIMMSEISPAR--------VALFEDSVDAWIQ 211 (313)
Q Consensus 185 k~y--~i~v~einp~K--------Lanf~~~ID~fV~ 211 (313)
+.- .+.-+..+++. |...+ ++|+++-
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~ai~~ 248 (338)
T 3dbi_A 213 ALNEKLIANGKWTPASGAEGVEMLLERGA-KFSALVA 248 (338)
T ss_dssp CCCGGGEECCCSSHHHHHHHHHHHHHTTC-CCSEEEE
T ss_pred CCCcceEEeCCCCHHHHHHHHHHHHcCCC-CCeEEEE
Confidence 642 24455666543 33445 6888764
No 36
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=72.20 E-value=2.6 Score=36.60 Aligned_cols=61 Identities=11% Similarity=0.176 Sum_probs=44.5
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHh----cC-cCCccEEEEec
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVA----LF-EDSVDAWIQIA 213 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLa----nf-~~~ID~fV~ia 213 (313)
..++||+|+..+....+..+++.+++.++++|.+..++.... ++++.. .+ ...+|++|+.+
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~~~~dgiIi~~ 72 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSDN-DIKKAQGYLATFVSHNCTGMISTA 72 (277)
T ss_dssp ---CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECTT-CHHHHHHHHHHHHHTTCSEEEECG
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHhCCCCEEEEec
Confidence 567899999998888888999999999999999877655443 554322 22 12599999876
No 37
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=72.11 E-value=11 Score=32.33 Aligned_cols=59 Identities=15% Similarity=0.282 Sum_probs=47.4
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeC-CCCHHHHhcCc-----CCccEEEEec
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMS-EISPARVALFE-----DSVDAWIQIA 213 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~-einp~KLanf~-----~~ID~fV~ia 213 (313)
....+|||+|+ .-...+++...+.|++-|..+-+-+.| .=+|++|..|. .++++||.+|
T Consensus 5 ~~~~V~IimgS---~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A 69 (169)
T 3trh_A 5 NKIFVAILMGS---DSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIAAA 69 (169)
T ss_dssp -CCEEEEEESC---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CCCcEEEEECc---HHhHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 45679999988 678999999999999999998877776 66899999982 1588887443
No 38
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=71.55 E-value=32 Score=31.02 Aligned_cols=165 Identities=8% Similarity=-0.001 Sum_probs=84.7
Q ss_pred CeEEEEe-cc---ccHhHHHHHHHHHHhCCCeEEecCCCCCCCc---cccCCCCCCCCCCCCCCeEEEecCCcc-cHHHH
Q 042576 38 GKLILAG-TI---QFASAIRAAKPELEKQGFKVMIPQSKPLSAG---EVLGCTAPKIPARESDFNLVFIADGRF-HLEAF 109 (313)
Q Consensus 38 ~~i~Lv~-ti---Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~G---evLGCt~~~~~~~~~~d~iv~igdGrF-Hle~~ 109 (313)
..|+++. ++ -|...++.+.+.+++.|+++++-....-.+. +.+-- ... ..+|++|+.+...- .....
T Consensus 62 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~---l~~--~~vdGiIi~~~~~~~~~~~~ 136 (349)
T 1jye_A 62 LLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHN---LLA--QRVSGLIINYPLDDQDAIAV 136 (349)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHH---HHT--TTCSCEEEESCCCHHHHHHH
T ss_pred CEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeCCCCcHHHHHHHHHH---HHH--CCCCEEEEecCCCChhHHHH
Confidence 3577664 22 3455667788899999999775322110000 00000 001 13788888753211 11112
Q ss_pred HhhCCCceEEEeCCCC-CcccccccChHHH-HHHHHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEE
Q 042576 110 MISNPGIKTFRYDPYL-GKLFLEEYDNKGM-RETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYV 187 (313)
Q Consensus 110 mi~np~~~~y~yDPys-~~~~~e~~d~~~~-l~~R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y 187 (313)
.+...++|++.+|... ..+.....|.... ...-.++++ + ..++||+|-|..+......-.+-.++-++++|.+..
T Consensus 137 ~~~~~~iPvV~i~~~~~~~~~~V~~d~~~~~~~a~~~L~~--~-G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~gi~~~ 213 (349)
T 1jye_A 137 EAACTNVPALFLDVSDQTPINSIIFSHEDGTRLGVEHLVA--L-GHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPI 213 (349)
T ss_dssp HHHTTTSCEEESSSCTTSSSCEEEECHHHHHHHHHHHHHH--H-TCCSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHhhCCCCEEEEcccCCCCCCEEEEchHHHHHHHHHHHHH--C-CCCEEEEEeCCCCCccHHHHHHHHHHHHHHcCCCcc
Confidence 2334578999888432 1222223343221 111123333 3 568999999876533333444556677888897654
Q ss_pred EEEeCCCCHHH--------HhcCcCCccEEEE
Q 042576 188 VIMMSEISPAR--------VALFEDSVDAWIQ 211 (313)
Q Consensus 188 ~i~v~einp~K--------Lanf~~~ID~fV~ 211 (313)
.+..+..+.+. |..-+ ++|+++-
T Consensus 214 ~~~~~~~~~~~~~~~~~~ll~~~~-~~~ai~~ 244 (349)
T 1jye_A 214 AEREGDWSAMSGFQQTMQMLNEGI-VPTAMLV 244 (349)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTTC-CCSEEEE
T ss_pred ccccCCCChHHHHHHHHHHHhCCC-CCCEEEE
Confidence 44456666531 22334 5888764
No 39
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=71.45 E-value=50 Score=28.55 Aligned_cols=152 Identities=7% Similarity=-0.045 Sum_probs=78.1
Q ss_pred CeEEEEec-c---ccHhHHHHHHHHHHhCCCeEEecCCCCCCCc--cccCCCCCCCCCCCCCCeEEEecCCcccHHH-HH
Q 042576 38 GKLILAGT-I---QFASAIRAAKPELEKQGFKVMIPQSKPLSAG--EVLGCTAPKIPARESDFNLVFIADGRFHLEA-FM 110 (313)
Q Consensus 38 ~~i~Lv~t-i---Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~G--evLGCt~~~~~~~~~~d~iv~igdGrFHle~-~m 110 (313)
.+|+++.. + -|...++.+.+.+++.|+++++-....-... +.+- .... ..+|++|+.+...-.... -.
T Consensus 21 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~l~~--~~vdgii~~~~~~~~~~~~~~ 95 (293)
T 2iks_A 21 RSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQPDNEMRCIE---HLLQ--RQVDAIIVSTSLPPEHPFYQR 95 (293)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHH---HHHH--TTCSEEEECCSSCTTCHHHHT
T ss_pred cEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHH---HHHH--cCCCEEEEeCCCCCcHHHHHH
Confidence 46887642 2 3455667788889999999765221100000 0000 0001 237898887543211111 12
Q ss_pred hhCCCceEEEeCCCCC--cccccccChHHHHHHHHHHHHHHh-hcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEE
Q 042576 111 ISNPGIKTFRYDPYLG--KLFLEEYDNKGMRETRKRAIEKAM-KEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYV 187 (313)
Q Consensus 111 i~np~~~~y~yDPys~--~~~~e~~d~~~~l~~R~~~I~kak-~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y 187 (313)
+....+|++.+|.... .+.....|.... -|. +.+... ...++||+|.|..+......-.+-.++-++++|.+..
T Consensus 96 ~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~--~~~-a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~ 172 (293)
T 2iks_A 96 WANDPFPIVALDRALDREHFTSVVGADQDD--AEM-LAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVH 172 (293)
T ss_dssp TTTSSSCEEEEESCCCTTTCEEEEECHHHH--HHH-HHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHHHHHTTCCCCEE
T ss_pred HHhCCCCEEEECCccCcCCCCEEEecCHHH--HHH-HHHHHHHCCCCEEEEEecCcccccHHHHHHHHHHHHHHcCCCcc
Confidence 3345788888875432 222223343222 121 222222 1467899999886543334444556677788887654
Q ss_pred EEEeCCCCHH
Q 042576 188 VIMMSEISPA 197 (313)
Q Consensus 188 ~i~v~einp~ 197 (313)
.+..+..+.+
T Consensus 173 ~~~~~~~~~~ 182 (293)
T 2iks_A 173 FLYANSYERE 182 (293)
T ss_dssp EEEESSSCHH
T ss_pred EEEcCCCChh
Confidence 4555666654
No 40
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=71.43 E-value=34 Score=29.51 Aligned_cols=166 Identities=14% Similarity=0.086 Sum_probs=84.7
Q ss_pred CeEEEEec-c---ccHhHHHHHHHHHHhCCCeEEecCCCCCCCcc--ccCCCCCCCCCCCCCCeEEEecCCcccHHHHHh
Q 042576 38 GKLILAGT-I---QFASAIRAAKPELEKQGFKVMIPQSKPLSAGE--VLGCTAPKIPARESDFNLVFIADGRFHLEAFMI 111 (313)
Q Consensus 38 ~~i~Lv~t-i---Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~Ge--vLGCt~~~~~~~~~~d~iv~igdGrFHle~~mi 111 (313)
.+|+++.. + -|...++.+.+.+++.|+++++-....-...| .+- .... ..+|++|+.+.......--.+
T Consensus 9 ~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~---~l~~--~~vdgiIi~~~~~~~~~~~~~ 83 (291)
T 3egc_A 9 NVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAEDIVREREAVG---QFFE--RRVDGLILAPSEGEHDYLRTE 83 (291)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHH---HHHH--TTCSEEEECCCSSCCHHHHHS
T ss_pred cEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHH---HHHH--CCCCEEEEeCCCCChHHHHHh
Confidence 45776642 2 34555777888899999987652211000000 000 0001 237898887654322222224
Q ss_pred hCCCceEEEeCCCCC--cccccccChHHHHHHH-HHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEE
Q 042576 112 SNPGIKTFRYDPYLG--KLFLEEYDNKGMRETR-KRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVV 188 (313)
Q Consensus 112 ~np~~~~y~yDPys~--~~~~e~~d~~~~l~~R-~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~ 188 (313)
....+|++.+|-... .+.....|....-+.= .+++ .+ ..+++|+|.|..+......-.+-.++-++++|.+.-.
T Consensus 84 ~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~--~~-G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~ 160 (291)
T 3egc_A 84 LPKTFPIVAVNRELRIPGCGAVLSENVRGARTAVEYLI--AR-GHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQ 160 (291)
T ss_dssp SCTTSCEEEESSCCCCTTCEEEEECHHHHHHHHHHHHH--HT-TCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCG
T ss_pred hccCCCEEEEecccCCCCCCEEEECcHHHHHHHHHHHH--Hc-CCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCH
Confidence 455789998886543 2333334433322111 1121 13 6789999998876555555666677788888865321
Q ss_pred --EEeCCCCH--------HHHhcCcCCccEEEEe
Q 042576 189 --IMMSEISP--------ARVALFEDSVDAWIQI 212 (313)
Q Consensus 189 --i~v~einp--------~KLanf~~~ID~fV~i 212 (313)
+..+..+. +-|...+ ++|+++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~~ 193 (291)
T 3egc_A 161 EWIAAGGVRADNGRDGAIKVLTGAD-RPTALLTS 193 (291)
T ss_dssp GGEEC------CCHHHHHHHHTC-C-CCSEEEES
T ss_pred HHeEeCCCChhHHHHHHHHHHhCCC-CCcEEEEC
Confidence 22233332 1232335 68888743
No 41
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=70.84 E-value=50 Score=28.33 Aligned_cols=170 Identities=12% Similarity=0.033 Sum_probs=87.9
Q ss_pred CeEEEEec----cccHhHHHHHHHHHHhCCCeEEecCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCcccH-HHH-Hh
Q 042576 38 GKLILAGT----IQFASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHL-EAF-MI 111 (313)
Q Consensus 38 ~~i~Lv~t----iQf~~~l~~~~~~L~~~g~~v~ipq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHl-e~~-mi 111 (313)
.+|+++.. --|...++.+.+.+++.|+++++-....-...|. ..-...+. ..+|++|+.+...-.. ..+ .+
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~-~~~~~l~~--~~vdgiI~~~~~~~~~~~~~~~~ 85 (293)
T 3l6u_A 9 NIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNSRISER-EQILEFVH--LKVDAIFITTLDDVYIGSAIEEA 85 (293)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHH-HHHHHHHH--TTCSEEEEECSCTTTTHHHHHHH
T ss_pred cEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHH-HHHHHHHH--cCCCEEEEecCChHHHHHHHHHH
Confidence 45776642 2345556778889999999976522110000000 00000001 1378888875432111 111 23
Q ss_pred hCCCceEEEeCCCCCc---ccccccChHHHHHH-HHHHHHHH--hhcC--CEEEEEEeCCCCCCcHHHHHHHHHHHHHc-
Q 042576 112 SNPGIKTFRYDPYLGK---LFLEEYDNKGMRET-RKRAIEKA--MKEA--RTWGIVLGTLGRQGNPRILERLQKRMEKK- 182 (313)
Q Consensus 112 ~np~~~~y~yDPys~~---~~~e~~d~~~~l~~-R~~~I~ka--k~~A--~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~- 182 (313)
...++|++.+|-.... +.....|....-+. =.+++++. .... +++|+|.|..+......-.+-.++-++++
T Consensus 86 ~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~ 165 (293)
T 3l6u_A 86 KKAGIPVFAIDRMIRSDAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENEP 165 (293)
T ss_dssp HHTTCCEEEESSCCCCTTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCT
T ss_pred HHcCCCEEEecCCCCCCcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchHHHHHHHHHHHHHhCC
Confidence 3357899988854332 23233443322111 12234432 1011 38999998766544455556667777777
Q ss_pred CCcEEEEEeCCCCHHH--------HhcCcCCccEEEE
Q 042576 183 GFDYVVIMMSEISPAR--------VALFEDSVDAWIQ 211 (313)
Q Consensus 183 Gkk~y~i~v~einp~K--------Lanf~~~ID~fV~ 211 (313)
|.+......+..+++. |...+ ++|+++.
T Consensus 166 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~ 201 (293)
T 3l6u_A 166 TLSIVDSVSGNYDPVTSERVMRQVIDSGI-PFDAVYC 201 (293)
T ss_dssp TEEEEEEEECTTCHHHHHHHHHHHHHTTC-CCSEEEE
T ss_pred CcEEeeeccCCCCHHHHHHHHHHHHHhCC-CCCEEEE
Confidence 8777666667766543 33445 6888764
No 42
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=70.72 E-value=5.6 Score=34.91 Aligned_cols=65 Identities=8% Similarity=-0.104 Sum_probs=48.6
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHh----cCc-CCccEEEEecCCC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVA----LFE-DSVDAWIQIACPR 216 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLa----nf~-~~ID~fV~iaCPr 216 (313)
..++||+|+..++-.....+++.+++.++++|.+..++..+.-++++.. ++- ..+|+.|+.++..
T Consensus 3 ~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~ 72 (305)
T 3g1w_A 3 LNETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDP 72 (305)
T ss_dssp --CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSST
T ss_pred CCceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCH
Confidence 4578999999998888889999999999999988776566666765432 221 1499999877654
No 43
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=70.66 E-value=13 Score=31.86 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=47.0
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeC-CCCHHHHhcCc-----CCccEEEEec
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMS-EISPARVALFE-----DSVDAWIQIA 213 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~-einp~KLanf~-----~~ID~fV~ia 213 (313)
+..++|||+|+ .-.+.+++...+.|++-|.++-+-+.| .=+|++|..|. +++++||.+|
T Consensus 2 ~~~~V~Iimgs---~SD~~v~~~a~~~l~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~A 66 (163)
T 3ors_A 2 NAMKVAVIMGS---SSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGA 66 (163)
T ss_dssp -CCCEEEEESC---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred CCCeEEEEECc---HHHHHHHHHHHHHHHHcCCCEEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 45679999988 678999999999999999998777766 66899998883 1488887443
No 44
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=70.65 E-value=22 Score=30.71 Aligned_cols=158 Identities=11% Similarity=0.009 Sum_probs=86.8
Q ss_pred CeEEEEec-c---ccHhHHHHHHHHHHhCCCe-EEecCCCCCCCcc--ccCCCCCCCCCCCCCCeEEEecCCcccHHHHH
Q 042576 38 GKLILAGT-I---QFASAIRAAKPELEKQGFK-VMIPQSKPLSAGE--VLGCTAPKIPARESDFNLVFIADGRFHLEAFM 110 (313)
Q Consensus 38 ~~i~Lv~t-i---Qf~~~l~~~~~~L~~~g~~-v~ipq~~pls~Ge--vLGCt~~~~~~~~~~d~iv~igdGrFHle~~m 110 (313)
.+|+++.. + -|...++.+.+.+++.|++ +++.....-...| .+. .... ..+|++|+.+ . .++.
T Consensus 11 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~---~l~~--~~vdgiIi~~-~--~~~~-- 80 (277)
T 3hs3_A 11 KMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFSTNSDVKKYQNAII---NFEN--NNVDGIITSA-F--TIPP-- 80 (277)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECSSCCHHHHHHHHH---HHHH--TTCSEEEEEC-C--CCCT--
T ss_pred CEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeCCCChHHHHHHHH---HHHh--CCCCEEEEcc-h--HHHH--
Confidence 45776642 2 3555677788899999999 7653221100000 000 0001 2378988887 1 2222
Q ss_pred hhCCCceEEEeCCC-CC--cccccccChHHHHHHH-HHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcE
Q 042576 111 ISNPGIKTFRYDPY-LG--KLFLEEYDNKGMRETR-KRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDY 186 (313)
Q Consensus 111 i~np~~~~y~yDPy-s~--~~~~e~~d~~~~l~~R-~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~ 186 (313)
+...++|++.+|-. .. .+ ....|....-+.= .+++ + ..+++|+|.|..+......-.+-.++-++++|.+.
T Consensus 81 ~~~~~iPvV~~~~~~~~~~~~-~V~~D~~~~g~~a~~~L~---~-G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~ 155 (277)
T 3hs3_A 81 NFHLNTPLVMYDSANINDDIV-RIVSNNTKGGKESIKLLS---K-KIEKVLIQHWPLSLPTIRERIEAMTAEASKLKIDY 155 (277)
T ss_dssp TCCCSSCEEEESCCCCCSSSE-EEEECHHHHHHHHHHTSC---T-TCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHhCCCCEEEEcccccCCCCE-EEEEChHHHHHHHHHHHH---h-CCCEEEEEeCCCcCccHHHHHHHHHHHHHHCCCCC
Confidence 33457888888855 22 23 3344543322111 1122 6 78899999998765555556666777888999877
Q ss_pred EE-EEeCCCCHHH----HhcCcCCccEEEE
Q 042576 187 VV-IMMSEISPAR----VALFEDSVDAWIQ 211 (313)
Q Consensus 187 y~-i~v~einp~K----Lanf~~~ID~fV~ 211 (313)
.. +..+..+.+. |...+ ++|+++-
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~ 184 (277)
T 3hs3_A 156 LLEETPENNPYISAQSALNKSN-QFDAIIT 184 (277)
T ss_dssp EEEECCSSCHHHHHHHHHHTGG-GCSEEEC
T ss_pred CCCCccCCchHHHHHHHHcCCC-CCCEEEE
Confidence 65 4444433222 22334 5888763
No 45
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=69.78 E-value=50 Score=27.90 Aligned_cols=160 Identities=9% Similarity=0.053 Sum_probs=79.8
Q ss_pred ccHhHHHHHHHHHHhCCCeEEecCCC-CCCCccccCCCCCCCCCCCC-CCeEEEecC-CcccHHHH-HhhCCCceEEEeC
Q 042576 47 QFASAIRAAKPELEKQGFKVMIPQSK-PLSAGEVLGCTAPKIPARES-DFNLVFIAD-GRFHLEAF-MISNPGIKTFRYD 122 (313)
Q Consensus 47 Qf~~~l~~~~~~L~~~g~~v~ipq~~-pls~GevLGCt~~~~~~~~~-~d~iv~igd-GrFHle~~-mi~np~~~~y~yD 122 (313)
-|...++.+.+.+++.|+++.+-... ...+.+-... ...+.. .. +|++|+.+. .......+ .+...++|++.+|
T Consensus 14 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~-i~~l~~-~~~vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~~ 91 (276)
T 3ksm_A 14 YWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQI-LSYHLS-QAPPDALILAPNSAEDLTPSVAQYRARNIPVLVVD 91 (276)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHH-HHHHHH-HSCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHH-HHHHHH-hCCCCEEEEeCCCHHHHHHHHHHHHHCCCcEEEEe
Confidence 35556677888899999997652210 0000000000 000000 13 789888763 22222222 2334578999888
Q ss_pred CCCCc---ccccccChHHHHHHH-HHHHHHH--hhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHc-CCcEEEEEeCCCC
Q 042576 123 PYLGK---LFLEEYDNKGMRETR-KRAIEKA--MKEARTWGIVLGTLGRQGNPRILERLQKRMEKK-GFDYVVIMMSEIS 195 (313)
Q Consensus 123 Pys~~---~~~e~~d~~~~l~~R-~~~I~ka--k~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~-Gkk~y~i~v~ein 195 (313)
-.... ......|....-+.= .+++++. + ..+++|+|.|..+......-.+-.++-++++ |.+...+..+..+
T Consensus 92 ~~~~~~~~~~~V~~d~~~~g~~~~~~l~~~~~~~-G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~ 170 (276)
T 3ksm_A 92 SDLAGDAHQGLVATDNYAAGQLAARALLATLDLS-KERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIAAPYAGDD 170 (276)
T ss_dssp SCCSSSCSSEEEECCHHHHHHHHHHHHHHHSCTT-SCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEECCBCCSS
T ss_pred cCCCCCCcceEEccCHHHHHHHHHHHHHHhcCcC-CCceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEEEEEecCCCc
Confidence 54322 222334433322111 1122221 1 3578999988755444445555666667777 7666555556655
Q ss_pred HHH--------HhcCcCCccEEE
Q 042576 196 PAR--------VALFEDSVDAWI 210 (313)
Q Consensus 196 p~K--------Lanf~~~ID~fV 210 (313)
.+. |...+ ++|+++
T Consensus 171 ~~~~~~~~~~~l~~~~-~~~ai~ 192 (276)
T 3ksm_A 171 RGAARSEMLRLLKETP-TIDGLF 192 (276)
T ss_dssp HHHHHHHHHHHHHHCS-CCCEEE
T ss_pred HHHHHHHHHHHHHhCC-CceEEE
Confidence 543 23334 577765
No 46
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=69.67 E-value=51 Score=27.97 Aligned_cols=154 Identities=8% Similarity=-0.057 Sum_probs=78.2
Q ss_pred ccHhHHHHHHHHHHhCCCeEEecCCC--CCCCccccCCCCCCCCCCCCCCeEEEecCCcccHHHH-HhhCCCceEEEeCC
Q 042576 47 QFASAIRAAKPELEKQGFKVMIPQSK--PLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAF-MISNPGIKTFRYDP 123 (313)
Q Consensus 47 Qf~~~l~~~~~~L~~~g~~v~ipq~~--pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~~-mi~np~~~~y~yDP 123 (313)
-|...++.+.+.+++.|+++++-... +...-+.+ ..... ..+|++|+.+... .-..+ .+...++|++.+|-
T Consensus 13 ~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~---~~l~~--~~vdgiI~~~~~~-~~~~~~~~~~~~iPvV~~~~ 86 (276)
T 2h0a_A 13 FYRRLVEGIEGVLLEQRYDLALFPILSLARLKRYLE---NTTLA--YLTDGLILASYDL-TERFEEGRLPTERPVVLVDA 86 (276)
T ss_dssp HHHHHHHHHHHHHGGGTCEEEECCCCSCCCCC--------------CCCSEEEEESCCC-C------CCSCSSCEEEESS
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCCchhhHHHHH---HHHHh--CCCCEEEEecCCC-CHHHHHHHhhcCCCEEEEec
Confidence 35556778888999999997763221 11111111 00111 2478988775432 21111 23345788888885
Q ss_pred CCCcccccccChHHHHHHHHHHHHHHh-hcCCEEEEEEeCC-C---CCCcH-HHHHHHHHHHHHcCCcEEE--EEeCCCC
Q 042576 124 YLGKLFLEEYDNKGMRETRKRAIEKAM-KEARTWGIVLGTL-G---RQGNP-RILERLQKRMEKKGFDYVV--IMMSEIS 195 (313)
Q Consensus 124 ys~~~~~e~~d~~~~l~~R~~~I~kak-~~A~~~GIIvgTL-g---~Q~~~-~ii~~l~~ll~~~Gkk~y~--i~v~ein 195 (313)
....+.....|..+.- |. +.+... ...+++|+|-|.. + ..... .-.+-.++-++++|.+... +..+..+
T Consensus 87 ~~~~~~~V~~d~~~~~--~~-a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~ 163 (276)
T 2h0a_A 87 QNPRYDSVYLDNRLGG--RL-AGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYITRHS 163 (276)
T ss_dssp CCTTSEEEEECSHHHH--HH-HHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEEECSS
T ss_pred cCCCCCEEEEccHHHH--HH-HHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCCChHHeeecCCC
Confidence 4322322334433221 11 122221 1568999999876 5 44444 5566777888888876421 2334445
Q ss_pred HHH--------HhcCcCCccEEE
Q 042576 196 PAR--------VALFEDSVDAWI 210 (313)
Q Consensus 196 p~K--------Lanf~~~ID~fV 210 (313)
.+. |+.-+ ++|+++
T Consensus 164 ~~~~~~~~~~~l~~~~-~~~ai~ 185 (276)
T 2h0a_A 164 QEGGRLALRHFLEKAS-PPLNVF 185 (276)
T ss_dssp HHHHHHHHHHHHTTCC-SSEEEE
T ss_pred hHHHHHHHHHHHhCCC-CCCEEE
Confidence 432 22233 588876
No 47
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=69.55 E-value=43 Score=29.05 Aligned_cols=164 Identities=9% Similarity=0.073 Sum_probs=82.0
Q ss_pred CeEEEEe-cc---ccHhHHHHHHHHHHhCCCeEEecCCCCCCCc--cccCCCCCCCCCCCCCCeEEEecCCcccHHHH-H
Q 042576 38 GKLILAG-TI---QFASAIRAAKPELEKQGFKVMIPQSKPLSAG--EVLGCTAPKIPARESDFNLVFIADGRFHLEAF-M 110 (313)
Q Consensus 38 ~~i~Lv~-ti---Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~G--evLGCt~~~~~~~~~~d~iv~igdGrFHle~~-m 110 (313)
.+|+++. ++ -|...++.+.+.+++.|+++++-....-... +.+- .... ..+|++|+.+... ....+ .
T Consensus 17 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~---~l~~--~~vdgiIi~~~~~-~~~~~~~ 90 (289)
T 2fep_A 17 TTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLN---TMLG--KQVDGIVFMGGNI-TDEHVAE 90 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHH---HHHH--TTCSEEEECCSCC-CHHHHHH
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHH---HHHh--CCCCEEEEecCCC-CHHHHHH
Confidence 3577664 22 3555677788899999998765211100000 0000 0001 2378988876422 21212 2
Q ss_pred hhCCCceEEEeCCCCC--cccccccChHHHHHH-HHHHHHHHhhcCCEEEEEEeCC-CCCCcHHHHHHHHHHHHHcCCcE
Q 042576 111 ISNPGIKTFRYDPYLG--KLFLEEYDNKGMRET-RKRAIEKAMKEARTWGIVLGTL-GRQGNPRILERLQKRMEKKGFDY 186 (313)
Q Consensus 111 i~np~~~~y~yDPys~--~~~~e~~d~~~~l~~-R~~~I~kak~~A~~~GIIvgTL-g~Q~~~~ii~~l~~ll~~~Gkk~ 186 (313)
+....+|++.+|-... .+.....|....-+. =.++++ + ..+++|+|.|.. +......-.+-.++-++++|.+.
T Consensus 91 l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~--~-G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~ 167 (289)
T 2fep_A 91 FKRSPVPIVLAASVEEQEETPSVAIDYEQAIYDAVKLLVD--K-GHTDIAFVSGPMAEPINRSKKLQGYKRALEEANLPF 167 (289)
T ss_dssp HHHSSSCEEEESCCCTTCCSCEEECCHHHHHHHHHHHHHH--T-TCSSEEEEESCTTSHHHHTTHHHHHHHHHHHTTCCC
T ss_pred HHhcCCCEEEEccccCCCCCCEEEECcHHHHHHHHHHHHH--C-CCCeEEEEeCCccccccHHHHHHHHHHHHHHcCCCC
Confidence 3345789998885432 222233443322111 011222 4 678999998875 33222233455667788888654
Q ss_pred EE--EEeCCCCHHH--------HhcCcCCccEEEE
Q 042576 187 VV--IMMSEISPAR--------VALFEDSVDAWIQ 211 (313)
Q Consensus 187 y~--i~v~einp~K--------Lanf~~~ID~fV~ 211 (313)
.. +..+..+.+. |+.-+ ++|+++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~ 201 (289)
T 2fep_A 168 NEQFVAEGDYTYDSGLEALQHLMSLDK-KPTAILS 201 (289)
T ss_dssp CGGGEEECCSCHHHHHHHHHHHTTSSS-CCSEEEE
T ss_pred ChheEeeCCCCHHHHHHHHHHHHcCCC-CCCEEEE
Confidence 21 3345555432 22223 5787663
No 48
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=68.97 E-value=5.5 Score=34.67 Aligned_cols=64 Identities=13% Similarity=0.111 Sum_probs=46.4
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHH----hcC-cCCccEEEEecCCC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARV----ALF-EDSVDAWIQIACPR 216 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KL----anf-~~~ID~fV~iaCPr 216 (313)
..++||+|+..+....+..+++-+++.+++.|.+..++.. .-++++. ..+ ...+|++|+.++..
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 75 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATS-QNSRISEREQILEFVHLKVDAIFITTLDD 75 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC-SSCHHHHHHHHHHHHHTTCSEEEEECSCT
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECC-CCCHHHHHHHHHHHHHcCCCEEEEecCCh
Confidence 6689999999988888889999999999999988766544 3444332 222 12599999887644
No 49
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=68.81 E-value=7.2 Score=33.82 Aligned_cols=65 Identities=9% Similarity=-0.094 Sum_probs=43.5
Q ss_pred cCCEEEEEEeCCC--CCCcHHHHHHHHHHHHHcCCcEEEEEeC-CCCHHHH----hcC-cCCccEEEEecCCC
Q 042576 152 EARTWGIVLGTLG--RQGNPRILERLQKRMEKKGFDYVVIMMS-EISPARV----ALF-EDSVDAWIQIACPR 216 (313)
Q Consensus 152 ~A~~~GIIvgTLg--~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~-einp~KL----anf-~~~ID~fV~iaCPr 216 (313)
..++||+|+..++ -.....+++.+++.++++|.+..++..+ +-++++. ..+ ...+|++|+.++..
T Consensus 4 ~~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 76 (289)
T 3brs_A 4 KQYYMICIPKVLDDSSDFWSVLVEGAQMAAKEYEIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADY 76 (289)
T ss_dssp -CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCT
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh
Confidence 5678999998877 6677788899999999999765544432 4455432 222 12589988877644
No 50
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=68.72 E-value=14 Score=31.95 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=47.1
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeC-CCCHHHHhcCc-----CCccEEEEec
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMS-EISPARVALFE-----DSVDAWIQIA 213 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~-einp~KLanf~-----~~ID~fV~ia 213 (313)
.+.++|||+|+ +-.+.+++...+.|++-|.++-+-++| .=+|++|..|. .++++||.+|
T Consensus 11 ~~P~V~IimGS---~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~A 75 (173)
T 4grd_A 11 SAPLVGVLMGS---SSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGA 75 (173)
T ss_dssp SSCSEEEEESS---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEE
T ss_pred CCCeEEEEeCc---HhHHHHHHHHHHHHHHcCCCEEEEEEccccCHHHHHHHHHHHHhcCCeEEEEec
Confidence 45689999988 778999999999999999998776666 55789988872 2578887443
No 51
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=67.53 E-value=13 Score=32.17 Aligned_cols=61 Identities=13% Similarity=0.276 Sum_probs=46.9
Q ss_pred CCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHh----cC-cCCccEEEEecC
Q 042576 153 ARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVA----LF-EDSVDAWIQIAC 214 (313)
Q Consensus 153 A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLa----nf-~~~ID~fV~iaC 214 (313)
.++||+|+..+.-.....+++.+++.++++|....++... -++++.. .+ ...+|.+|+.++
T Consensus 15 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~ 80 (298)
T 3tb6_A 15 NKTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTN-NNPDNERRGLENLLSQHIDGLIVEPT 80 (298)
T ss_dssp CCEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECT-TCHHHHHHHHHHHHHTCCSEEEECCS
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC-CChHHHHHHHHHHHHCCCCEEEEecc
Confidence 3899999999998889999999999999999887665543 4554422 22 125999998776
No 52
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=67.33 E-value=14 Score=31.90 Aligned_cols=57 Identities=12% Similarity=0.229 Sum_probs=47.3
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeC-CCCHHHHhcC------cCCccEEEEe
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMS-EISPARVALF------EDSVDAWIQI 212 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~-einp~KLanf------~~~ID~fV~i 212 (313)
....+|||+|+ .-...+++...+.|++-|..+-+-+.| .=+|++|..| . ++++||.+
T Consensus 6 ~~~~V~IimgS---~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR~p~~~~~~~~~a~~~-g~~ViIa~ 69 (174)
T 3lp6_A 6 ERPRVGVIMGS---DSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAAR-GLEVIIAG 69 (174)
T ss_dssp CCCSEEEEESC---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHHH-TCCEEEEE
T ss_pred CCCeEEEEECc---HHhHHHHHHHHHHHHHcCCCEEEEEECCCCCHHHHHHHHHHHHhC-CCCEEEEe
Confidence 34569999988 678999999999999999998777766 6689999999 4 68988844
No 53
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=67.20 E-value=21 Score=31.60 Aligned_cols=72 Identities=11% Similarity=-0.012 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEe
Q 042576 135 NKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQI 212 (313)
Q Consensus 135 ~~~~l~~R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~i 212 (313)
..+..+-...++.++.+..+++.|+.||..| +...++++|.+.+ ++|.++-++-+++.+++.|.. -+.+|++
T Consensus 22 ~~~av~~~~~l~~~~~~~~~kv~IlYgS~tG-nte~~A~~La~~l-~~g~~v~v~~l~~~~~~~l~~----~~~vI~~ 93 (219)
T 3hr4_A 22 LVKAVLFACMLMRKTMASRVRVTILFATETG-KSEALAWDLGALF-SCAFNPKVVCMDKYRLSCLEE----ERLLLVV 93 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTSCEEEEEEECSSS-HHHHHHHHHHHHH-TTTSEEEEEEGGGCCGGGGGT----CSEEEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEECCch-HHHHHHHHHHHHH-HcCCCeEEEEcccCCHhHhcc----CCeEEEE
Confidence 3445555677889998556789999999753 3345888898887 578888888899988776543 4455544
No 54
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=66.61 E-value=9.8 Score=33.37 Aligned_cols=63 Identities=16% Similarity=0.259 Sum_probs=47.3
Q ss_pred cCCEEEEEEeCCCCCCcH-HHHHHHHHHHHHcCCcEEEEEeCCCCHHHHh----cC-cCCccEEEEecCC
Q 042576 152 EARTWGIVLGTLGRQGNP-RILERLQKRMEKKGFDYVVIMMSEISPARVA----LF-EDSVDAWIQIACP 215 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~-~ii~~l~~ll~~~Gkk~y~i~v~einp~KLa----nf-~~~ID~fV~iaCP 215 (313)
..++||+|+..+....+. .+++.+++.++++|....++.. .-++++.. .+ ...+|.+|+.+..
T Consensus 12 ~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 80 (301)
T 3miz_A 12 RSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANT-GGSSEREVEIWKMFQSHRIDGVLYVTMY 80 (301)
T ss_dssp CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEEEEEE
T ss_pred CCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeC-CCChHHHHHHHHHHHhCCCCEEEEecCC
Confidence 678999999999888888 9999999999999988766553 44444322 22 1259999987754
No 55
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=66.32 E-value=15 Score=31.64 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=47.1
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHH----HHhcC-cCCccEEEEecCCC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPA----RVALF-EDSVDAWIQIACPR 216 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~----KLanf-~~~ID~fV~iaCPr 216 (313)
..++||+|+..+....+..+++.+++.++++|....++... +++ -+..+ ...+|+.| ++...
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~--~~~~~~~~~~~l~~~~vdgiI-~~~~~ 70 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSL--TSQAGTDPITSALSMRPDGII-IAQDI 70 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSS--SSCSSSCHHHHHHTTCCSEEE-EESCC
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCC--CchHHHHHHHHHHhCCCCEEE-ecCCC
Confidence 67899999999988899999999999999999887776665 332 22222 11599999 76643
No 56
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=66.08 E-value=12 Score=32.95 Aligned_cols=64 Identities=14% Similarity=0.092 Sum_probs=47.2
Q ss_pred CCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHH----hcC-cCCccEEEEecCCCc
Q 042576 153 ARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARV----ALF-EDSVDAWIQIACPRL 217 (313)
Q Consensus 153 A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KL----anf-~~~ID~fV~iaCPrl 217 (313)
.++||+|+..+.......+++-+++.+++.|.+..++.. .-++++- ..+ ...+|+.|+.+....
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~ 70 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA-NGNEETQMSQIENMINRGVDVLVIIPYNGQ 70 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC-TTCHHHHHHHHHHHHHTTCSEEEEECSSTT
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC-CCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 368999999999999999999999999999987665543 5555432 222 125999998876543
No 57
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=65.92 E-value=37 Score=30.37 Aligned_cols=160 Identities=11% Similarity=0.037 Sum_probs=83.8
Q ss_pred cHhHHHHHHHHHHhCCCeEEecCCCCCCCcc--ccCCCCCCCCCCCCCCeEEEecCCcccHHHHH-hhCCCceEEEeCCC
Q 042576 48 FASAIRAAKPELEKQGFKVMIPQSKPLSAGE--VLGCTAPKIPARESDFNLVFIADGRFHLEAFM-ISNPGIKTFRYDPY 124 (313)
Q Consensus 48 f~~~l~~~~~~L~~~g~~v~ipq~~pls~Ge--vLGCt~~~~~~~~~~d~iv~igdGrFHle~~m-i~np~~~~y~yDPy 124 (313)
|...++.+.+.+++.|+++.+-....-...| .+- ..+.....+|++|+.++.......+. +...++|++.+|-.
T Consensus 19 ~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~---~~i~~~~~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~ 95 (350)
T 3h75_A 19 WVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQAR---ELFQGRDKPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSP 95 (350)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHH---HHHHSSSCCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESC
T ss_pred HHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHH---HHHhcCCCCCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCC
Confidence 3455666788888888887652111000000 000 00010014799988875433322222 33457899888854
Q ss_pred CCc----------------ccccccChHHHH-HHHHHHHHHHhh---cC-CEEEEEEeCCCCCCcHHHHHHHHHHHHHcC
Q 042576 125 LGK----------------LFLEEYDNKGMR-ETRKRAIEKAMK---EA-RTWGIVLGTLGRQGNPRILERLQKRMEKKG 183 (313)
Q Consensus 125 s~~----------------~~~e~~d~~~~l-~~R~~~I~kak~---~A-~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~G 183 (313)
... +.....|....- ..=.+++++.+. .. +++++|.|..+......-.+-.++-++++|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~ 175 (350)
T 3h75_A 96 LTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHP 175 (350)
T ss_dssp CCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCT
T ss_pred CChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCC
Confidence 332 222334433221 111234555510 23 689999988766555566667778888888
Q ss_pred C-cEEEEEeCCCCHHH--------HhcCcCCccEEEE
Q 042576 184 F-DYVVIMMSEISPAR--------VALFEDSVDAWIQ 211 (313)
Q Consensus 184 k-k~y~i~v~einp~K--------Lanf~~~ID~fV~ 211 (313)
. +...+..+.-++++ |...+ ++|+++-
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~aI~~ 211 (350)
T 3h75_A 176 QVHLRQLVYGEWNRERAYRQAQQLLKRYP-KTQLVWS 211 (350)
T ss_dssp TEEEEEEEECTTCHHHHHHHHHHHHHHCT-TEEEEEE
T ss_pred CeEEEEEeeCCCcHHHHHHHHHHHHHhCC-CcCEEEE
Confidence 6 33334556666543 33345 6888654
No 58
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=65.66 E-value=17 Score=29.85 Aligned_cols=61 Identities=11% Similarity=0.144 Sum_probs=47.3
Q ss_pred CCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCC-CHHHHh-cCcCCccEEEEecCCC
Q 042576 153 ARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEI-SPARVA-LFEDSVDAWIQIACPR 216 (313)
Q Consensus 153 A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~ei-np~KLa-nf~~~ID~fV~iaCPr 216 (313)
.+++.||-+|.. -+...+++.|.+.|++.|.++-++-+++. .++.+. .+. +.|+ |+++||-
T Consensus 4 ~~kv~IvY~S~~-GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~-~~d~-ii~Gspt 66 (159)
T 3fni_A 4 ETSIGVFYVSEY-GYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVG-RCTG-LVIGMSP 66 (159)
T ss_dssp CCEEEEEECTTS-TTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHH-TEEE-EEEECCB
T ss_pred CCEEEEEEECCC-hHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHH-hCCE-EEEEcCc
Confidence 468999999974 44557999999999999999889999998 887764 454 4665 5566774
No 59
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=65.08 E-value=16 Score=32.37 Aligned_cols=63 Identities=10% Similarity=0.077 Sum_probs=48.7
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHH----hcCc-CCccEEEEecCC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARV----ALFE-DSVDAWIQIACP 215 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KL----anf~-~~ID~fV~iaCP 215 (313)
+.++||+|+..+....+..+++.+++.++++|.+..++. +.-++++- .++- ..+|+.|+.+..
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~i~~~~~~~vdgiIi~~~~ 69 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQY-ADDDIPNQLSQIENMVTKGVKVLVIASID 69 (330)
T ss_dssp CCCEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEE-CTTCHHHHHHHHHHHHHHTCSEEEECCSS
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEee-CCCCHHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 578999999999888899999999999999998866555 56666542 2221 149999987765
No 60
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=64.63 E-value=47 Score=29.15 Aligned_cols=166 Identities=13% Similarity=0.104 Sum_probs=81.7
Q ss_pred CeEEEEeccc---cHhHHHHHHHHHHhCCC----e--EEecCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCcccHHH
Q 042576 38 GKLILAGTIQ---FASAIRAAKPELEKQGF----K--VMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEA 108 (313)
Q Consensus 38 ~~i~Lv~tiQ---f~~~l~~~~~~L~~~g~----~--v~ipq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~ 108 (313)
.+|+++-++. |...++.+.+.|+++|+ + +++-.... .+.+...+- ..+.. ..+|.+|.+|+.. ...
T Consensus 9 ~~IGvi~~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~-~~~~~~~~~-~~l~~-~~vDgII~~~~~~--~~~ 83 (302)
T 2qh8_A 9 AKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQG-NPAIAVQIA-RQFVG-ENPDVLVGIATPT--AQA 83 (302)
T ss_dssp EEEEEEESSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTT-CHHHHHHHH-HHHHH-TCCSEEEEESHHH--HHH
T ss_pred cEEEEEEeccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCC-CHHHHHHHH-HHHHh-CCCCEEEECChHH--HHH
Confidence 4588775543 56667888999999998 3 33211100 000000000 00000 2478888876432 111
Q ss_pred HHhhCCCceEEEeC---CCC-----------CcccccccChHHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHH
Q 042576 109 FMISNPGIKTFRYD---PYL-----------GKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILER 174 (313)
Q Consensus 109 ~mi~np~~~~y~yD---Pys-----------~~~~~e~~d~~~~l~~R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~ 174 (313)
+.-.....|++..+ |.. ..++-. .+...+...=..+++..- ..+++|+|.|... ......++.
T Consensus 84 ~~~~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv-~~~~~~~~~~~~l~~~~P-g~~~I~~i~~~~~-~~~~~r~~g 160 (302)
T 2qh8_A 84 LVSATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGL-SDLSPVEQHVELIKEILP-NVKSIGVVYNPGE-ANAVSLMEL 160 (302)
T ss_dssp HHHHCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEE-ECCCCHHHHHHHHHHHST-TCCEEEEEECTTC-HHHHHHHHH
T ss_pred HHhcCCCcCEEEEecCCHhhcCccccccCCCCCEEEE-ECCcCHHHHHHHHHHhCC-CCcEEEEEecCCC-cchHHHHHH
Confidence 22125677866554 321 111111 111111111122333333 6789999998743 234556778
Q ss_pred HHHHHHHcCCcEEEEEeCCCC--HHHHhcCcCCccEEEE
Q 042576 175 LQKRMEKKGFDYVVIMMSEIS--PARVALFEDSVDAWIQ 211 (313)
Q Consensus 175 l~~ll~~~Gkk~y~i~v~ein--p~KLanf~~~ID~fV~ 211 (313)
.++.++++|.+.....+.... .+.+..+..++|+++.
T Consensus 161 ~~~al~~~gi~~~~~~~~~~~~~~~~~~~l~~~~dai~~ 199 (302)
T 2qh8_A 161 LKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYA 199 (302)
T ss_dssp HHHHHHHTTCEEEEEECSSGGGHHHHHHHHGGGCSEEEE
T ss_pred HHHHHHHcCCEEEEEecCChHHHHHHHHHHhccCCEEEE
Confidence 888899999887655543321 1223333226888654
No 61
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=64.12 E-value=18 Score=31.19 Aligned_cols=56 Identities=16% Similarity=0.236 Sum_probs=46.1
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeC-CCCHHHHhcCc-----CCccEEEEe
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMS-EISPARVALFE-----DSVDAWIQI 212 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~-einp~KLanf~-----~~ID~fV~i 212 (313)
.++|||+|+ .-...+++...+.|++-|..+-+-+.| .=+|++|..|. .++++||.+
T Consensus 13 ~~V~IimGS---~SD~~v~~~a~~~L~~~Gi~~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~ 74 (174)
T 3kuu_A 13 VKIAIVMGS---KSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAG 74 (174)
T ss_dssp CCEEEEESS---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEE
T ss_pred CcEEEEECc---HHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 369999987 678999999999999999998777776 66899999882 158888843
No 62
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=64.01 E-value=20 Score=30.68 Aligned_cols=55 Identities=13% Similarity=0.295 Sum_probs=45.1
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeC-CCCHHHHhcCc-----CCccEEEEe
Q 042576 155 TWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMS-EISPARVALFE-----DSVDAWIQI 212 (313)
Q Consensus 155 ~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~-einp~KLanf~-----~~ID~fV~i 212 (313)
.+|||+|+ .-.+.+++...+.|++-|..+-+-+.| .=+|++|..|- .++++||.+
T Consensus 7 ~V~IimgS---~SD~~v~~~a~~~l~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~ 67 (166)
T 3oow_A 7 QVGVIMGS---KSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGLKVIIAG 67 (166)
T ss_dssp EEEEEESS---GGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEE
T ss_pred eEEEEECc---HHhHHHHHHHHHHHHHcCCCEEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEE
Confidence 69999987 678999999999999999988777776 56799998882 158898843
No 63
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=63.88 E-value=12 Score=32.26 Aligned_cols=61 Identities=18% Similarity=0.183 Sum_probs=46.7
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEecCC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACP 215 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~iaCP 215 (313)
..++||+|+..+.-..+..+++.+++.++++|....++.. .-++++...+ .+|++|+.++.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~--~vdgiI~~~~~ 67 (277)
T 3cs3_A 7 QTNIIGVYLADYGGSFYGELLEGIKKGLALFDYEMIVCSG-KKSHLFIPEK--MVDGAIILDWT 67 (277)
T ss_dssp CCCEEEEEECSSCTTTHHHHHHHHHHHHHTTTCEEEEEES-TTTTTCCCTT--TCSEEEEECTT
T ss_pred CCcEEEEEecCCCChhHHHHHHHHHHHHHHCCCeEEEEeC-CCCHHHHhhc--cccEEEEecCC
Confidence 5678999999988888889999999999999987665443 3344444444 39999988764
No 64
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=63.67 E-value=72 Score=27.47 Aligned_cols=141 Identities=8% Similarity=-0.065 Sum_probs=71.9
Q ss_pred cHhHHHHHHHHHHhCCCeEEecCCC--CCCCccccCCCCCCCCCCCCCCeEEEecCCcccHHHHHhhCCCceEEEeCCCC
Q 042576 48 FASAIRAAKPELEKQGFKVMIPQSK--PLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMISNPGIKTFRYDPYL 125 (313)
Q Consensus 48 f~~~l~~~~~~L~~~g~~v~ipq~~--pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~~mi~np~~~~y~yDPys 125 (313)
|...++.+.+.+++.|+++++-... +...-+.+- .... ..+|++|+.+...-...--.+....+|++.+|-..
T Consensus 23 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~---~l~~--~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~~~~~ 97 (287)
T 3bbl_A 23 LDQFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRD---LIRS--GNVDGFVLSSINYNDPRVQFLLKQKFPFVAFGRSN 97 (287)
T ss_dssp HHHHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHH---HHHT--TCCSEEEECSCCTTCHHHHHHHHTTCCEEEESCCS
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHH---HHHc--CCCCEEEEeecCCCcHHHHHHHhcCCCEEEECCcC
Confidence 4566778889999999997763211 100000000 0001 24799888753321111112333578988888543
Q ss_pred C--cccccccChHHHHHH-HHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEE--EEeCCCCH
Q 042576 126 G--KLFLEEYDNKGMRET-RKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVV--IMMSEISP 196 (313)
Q Consensus 126 ~--~~~~e~~d~~~~l~~-R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~--i~v~einp 196 (313)
. .+.....|..+.-+. =.++++ + ..+++|+|.|..+......-.+-.++-++++|.+... +..+..++
T Consensus 98 ~~~~~~~V~~D~~~~g~~a~~~L~~--~-G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~~ 170 (287)
T 3bbl_A 98 PDWDFAWVDIDGTAGTRQAVEYLIG--R-GHRRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYILRGEGTF 170 (287)
T ss_dssp TTCCCCEEEECHHHHHHHHHHHHHH--H-TCCCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSH
T ss_pred CCCCCCEEEeccHHHHHHHHHHHHH--C-CCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhhEEeCCCCH
Confidence 2 222223343322111 012222 4 6789999998765433344455567778888865421 23455554
No 65
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=63.46 E-value=19 Score=31.20 Aligned_cols=56 Identities=11% Similarity=0.199 Sum_probs=44.7
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeC-CCCHHHHhcCc-----CCccEEEEe
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMS-EISPARVALFE-----DSVDAWIQI 212 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~-einp~KLanf~-----~~ID~fV~i 212 (313)
..+|||+|+ +-.+.+++...+.|++-|.++-+-++| .=+|++|..|. +++++||-.
T Consensus 23 p~V~IimGS---~SD~~v~~~a~~~L~~~gI~~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~ 84 (181)
T 4b4k_A 23 SLVGVIMGS---TSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAG 84 (181)
T ss_dssp CSEEEEESS---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEE
T ss_pred ccEEEEECC---HhHHHHHHHHHHHHHHcCCCeeEEEEccccChHHHHHHHHHHHhcCceEEEEe
Confidence 459999998 678999999999999999998777776 56799998772 246666643
No 66
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=63.46 E-value=38 Score=29.29 Aligned_cols=164 Identities=10% Similarity=0.065 Sum_probs=82.2
Q ss_pred CeEEEEec-c---ccHhHHHHHHHHHHhCCCeEEec-CC--CCCCCccccCCCCCCCCCCCCCCeEEEecCCcccHHHHH
Q 042576 38 GKLILAGT-I---QFASAIRAAKPELEKQGFKVMIP-QS--KPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFM 110 (313)
Q Consensus 38 ~~i~Lv~t-i---Qf~~~l~~~~~~L~~~g~~v~ip-q~--~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~~m 110 (313)
.+|+++.. + -|...++.+.+.+++.|+++++- .. .+...-+.+- .... ..+|++|+.+...-...--.
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~---~l~~--~~vdgiI~~~~~~~~~~~~~ 83 (290)
T 3clk_A 9 NVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALL---TAIE--RPVMGILLLSIALTDDNLQL 83 (290)
T ss_dssp CEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC----------CHHH---HHHS--SCCSEEEEESCC----CHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHH---HHHh--cCCCEEEEecccCCHHHHHH
Confidence 45777642 2 35556777888999999997653 21 1100000000 0001 24799887764321110112
Q ss_pred hhCCCceEEEeCCCCCc-ccccccChHHHHHHHHHHHHHH--hhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEE
Q 042576 111 ISNPGIKTFRYDPYLGK-LFLEEYDNKGMRETRKRAIEKA--MKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYV 187 (313)
Q Consensus 111 i~np~~~~y~yDPys~~-~~~e~~d~~~~l~~R~~~I~ka--k~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y 187 (313)
+....+|++.+|..... +.....|....- |. +.+.. + ..+++|+|.|..+......-.+-.++-++++|.+..
T Consensus 84 l~~~~iPvV~~~~~~~~~~~~V~~D~~~~g--~~-a~~~L~~~-G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~ 159 (290)
T 3clk_A 84 LQSSDVPYCFLSMGFDDDRPFISSDDEDIG--YQ-ATNLLINE-GHRQIGIAGIDQYPYTGRKRLAGYKKALKEANIAIN 159 (290)
T ss_dssp HHCC--CEEEESCC--CCSCEEECCHHHHH--HH-HHHHHHTT-TCCSEEEESCCCCTTTHHHHHHHHHHHHHHTTCCCC
T ss_pred HHhCCCCEEEEcCCCCCCCCEEEeChHHHH--HH-HHHHHHHc-CCCEEEEEeCCCCCcchHHHHHHHHHHHHHcCCCCC
Confidence 34467899888864332 322334433221 11 22222 3 568899998876655555666777888888887642
Q ss_pred --EEEeCCCCHHH-------HhcCcCCccEEEE
Q 042576 188 --VIMMSEISPAR-------VALFEDSVDAWIQ 211 (313)
Q Consensus 188 --~i~v~einp~K-------Lanf~~~ID~fV~ 211 (313)
.+..+..+.+. |..-+ ++|+++.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ai~~ 191 (290)
T 3clk_A 160 QEWIKPGDYSYTSGEQAMKAFGKNT-DLTGIIA 191 (290)
T ss_dssp GGGEECCCSSHHHHHHHHHHHCTTC-CCSEEEE
T ss_pred cceEEcCCCChhhHHHHHHHHhccC-CCcEEEE
Confidence 13345555442 21223 6888764
No 67
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=62.69 E-value=86 Score=28.07 Aligned_cols=163 Identities=10% Similarity=0.088 Sum_probs=85.1
Q ss_pred eEEEEe-c---cccHhHHHHHHHHHHhCCCeEEecCCC--CCCCccccCCCCCCCCCCCCCCeEEEecCCcccHHHH-Hh
Q 042576 39 KLILAG-T---IQFASAIRAAKPELEKQGFKVMIPQSK--PLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAF-MI 111 (313)
Q Consensus 39 ~i~Lv~-t---iQf~~~l~~~~~~L~~~g~~v~ipq~~--pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~~-mi 111 (313)
.|+++. + --|...++.+.+.+++.|+.+++-... +...-+.+- ..+. ..+|++|+.+... ....+ .+
T Consensus 72 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~---~l~~--~~vdGiI~~~~~~-~~~~~~~l 145 (355)
T 3e3m_A 72 FVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYTAYSPEREEQLVE---TMLR--RRPEAMVLSYDGH-TEQTIRLL 145 (355)
T ss_dssp EEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHH---HHHH--TCCSEEEEECSCC-CHHHHHHH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHH---HHHh--CCCCEEEEeCCCC-CHHHHHHH
Confidence 577664 2 235666788899999999997753211 000000000 0001 2379998876532 22222 23
Q ss_pred hCCCceEEEeCCCC--CcccccccChHHHHHH-HHHHHHHHhhcCCEEEEEEeCCCCCC-cHHHHHHHHHHHHHcCCcEE
Q 042576 112 SNPGIKTFRYDPYL--GKLFLEEYDNKGMRET-RKRAIEKAMKEARTWGIVLGTLGRQG-NPRILERLQKRMEKKGFDYV 187 (313)
Q Consensus 112 ~np~~~~y~yDPys--~~~~~e~~d~~~~l~~-R~~~I~kak~~A~~~GIIvgTLg~Q~-~~~ii~~l~~ll~~~Gkk~y 187 (313)
....+|++.+|-.. ........|....-+. =.++++ + ..+++|+|.|...... ...-.+-.++-++++|.+.-
T Consensus 146 ~~~~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~--~-G~r~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~ 222 (355)
T 3e3m_A 146 QRASIPIVEIWEKPAHPIGHTVGFSNERAAYDMTNALLA--R-GFRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPD 222 (355)
T ss_dssp HHCCSCEEEESSCCSSCSSEEEECCHHHHHHHHHHHHHH--T-TCCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSC
T ss_pred HhCCCCEEEECCccCCCCCCEEEeChHHHHHHHHHHHHH--C-CCCeEEEEccCcccChhHHHHHHHHHHHHHHCCcCCC
Confidence 34578888875322 1121223343222111 011222 3 6789999999776544 34556677788888987643
Q ss_pred ---EEEeCCCCHH--------HHhcCcCCccEEEE
Q 042576 188 ---VIMMSEISPA--------RVALFEDSVDAWIQ 211 (313)
Q Consensus 188 ---~i~v~einp~--------KLanf~~~ID~fV~ 211 (313)
.+..+..+.+ -|...+ ++|+++-
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~ai~~ 256 (355)
T 3e3m_A 223 QEIRLGAPPLSIEDGVAAAELILQEYP-DTDCIFC 256 (355)
T ss_dssp CEEEESCSSCCHHHHHHHHHHHHHHCT-TCCEEEE
T ss_pred ccEEEecCCCCHHHHHHHHHHHHcCCC-CCcEEEE
Confidence 3333444433 233345 6888764
No 68
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=62.26 E-value=53 Score=28.27 Aligned_cols=164 Identities=13% Similarity=0.047 Sum_probs=81.0
Q ss_pred CeEEEEec-c---ccHhHHHHHHHHHHhCCCeEEecCCCCC-CC-ccccCCCCCCCCCCCCCCeEEEecCCcc----cHH
Q 042576 38 GKLILAGT-I---QFASAIRAAKPELEKQGFKVMIPQSKPL-SA-GEVLGCTAPKIPARESDFNLVFIADGRF----HLE 107 (313)
Q Consensus 38 ~~i~Lv~t-i---Qf~~~l~~~~~~L~~~g~~v~ipq~~pl-s~-GevLGCt~~~~~~~~~~d~iv~igdGrF----Hle 107 (313)
.+|+++.. + -|...++.+.+.+++.|+++++-..... .+ .|. .+-...+. ..+|++|+.+...- .+.
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~vdgiii~~~~~~~~~~~~~ 82 (304)
T 3o1i_D 6 EKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQE-QQLALCTQ--WGANAIILGTVDPHAYEHNLK 82 (304)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHH-HHHHHHHH--HTCSEEEECCSSTTSSTTTHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHH-HHHHHHHH--cCCCEEEEeCCChhHHHHHHH
Confidence 35776642 2 3455567788888888998765221100 00 000 00000000 13788887753221 222
Q ss_pred HHHhhCCCceEEEeCCCC--------CcccccccChHHHHH-HHHHHHHHHhh--cCCEEEEEEeCCCCCCcHHHHHHHH
Q 042576 108 AFMISNPGIKTFRYDPYL--------GKLFLEEYDNKGMRE-TRKRAIEKAMK--EARTWGIVLGTLGRQGNPRILERLQ 176 (313)
Q Consensus 108 ~~mi~np~~~~y~yDPys--------~~~~~e~~d~~~~l~-~R~~~I~kak~--~A~~~GIIvgTLg~Q~~~~ii~~l~ 176 (313)
.+ . .++|++.+|-.. ..+.....|....-+ .=.+++++... ..+++|+|.|..+......-.+-.+
T Consensus 83 ~~--~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~R~~gf~ 159 (304)
T 3o1i_D 83 SW--V-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKPVTTGFY 159 (304)
T ss_dssp HH--T-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CHHHHHHH
T ss_pred HH--c-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHHHHHHHH
Confidence 22 3 588999886332 122223344332211 11222322210 0568999988766555455566667
Q ss_pred HHHHHcCCcEEEEEeCCCCHHH--------HhcCcCCccEE
Q 042576 177 KRMEKKGFDYVVIMMSEISPAR--------VALFEDSVDAW 209 (313)
Q Consensus 177 ~ll~~~Gkk~y~i~v~einp~K--------Lanf~~~ID~f 209 (313)
+-++++|.+......+.-+++. | ..+ ++|+|
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~-~~~ai 198 (304)
T 3o1i_D 160 EAIKNSDIHIVDSFWADNDKELQRNLVQRVI-DMG-NIDYI 198 (304)
T ss_dssp HTTTTBTEEEEECCCCCSCHHHHHHHHHHHH-HHS-CCSEE
T ss_pred HHHhcCCCEEEEeecCCCcHHHHHHHHHHHH-cCC-CCCEE
Confidence 7777788776655566666543 3 445 68994
No 69
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=62.12 E-value=16 Score=31.67 Aligned_cols=63 Identities=21% Similarity=0.316 Sum_probs=47.4
Q ss_pred HHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeC-CCCHHHHhcCc-----CCccEEEEec
Q 042576 147 EKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMS-EISPARVALFE-----DSVDAWIQIA 213 (313)
Q Consensus 147 ~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~-einp~KLanf~-----~~ID~fV~ia 213 (313)
+.+. +...+|||+|+ .-...+++.....|++-|.++-+-+.| .=+|++|..|. .++++||.+|
T Consensus 16 ~~~~-~~~~V~IimGS---~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~A 84 (182)
T 1u11_A 16 DKAA-SAPVVGIIMGS---QSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVIIAGA 84 (182)
T ss_dssp -----CCCSEEEEESS---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred hhhc-CCCEEEEEECc---HHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEec
Confidence 3444 55679999988 778999999999999999998776666 66899988884 1378887443
No 70
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=61.55 E-value=68 Score=28.33 Aligned_cols=167 Identities=8% Similarity=-0.006 Sum_probs=85.3
Q ss_pred CeEEEEec----cccHhHHHHHHHHHHhCCCeEEecCCCCCCCcc--ccCCCCCCCCCCCC--CCeEEEecCCcccH-HH
Q 042576 38 GKLILAGT----IQFASAIRAAKPELEKQGFKVMIPQSKPLSAGE--VLGCTAPKIPARES--DFNLVFIADGRFHL-EA 108 (313)
Q Consensus 38 ~~i~Lv~t----iQf~~~l~~~~~~L~~~g~~v~ipq~~pls~Ge--vLGCt~~~~~~~~~--~d~iv~igdGrFHl-e~ 108 (313)
.+|+++.. --|...++.+.+.+++.|+++++-....-...| .+- .+.. .. +|++|+.+...-.. ..
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~----~l~~-~~~~vdgiIi~~~~~~~~~~~ 80 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTTEGSSEKGIADIR----ALLQ-KTGGNLVLNVDPNDSADARVI 80 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEECTTCHHHHHHHHH----HHHH-HTTTCEEEEECCSSHHHHHHH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHHHH----HHHH-CCCCCCEEEEeCCCHHHHHHH
Confidence 35776642 224455677888888889887652111000000 000 0000 24 68888765432111 11
Q ss_pred HH-hhCCCceEEEeCCCCC----------cccccccChHHHHHH-HHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHH
Q 042576 109 FM-ISNPGIKTFRYDPYLG----------KLFLEEYDNKGMRET-RKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQ 176 (313)
Q Consensus 109 ~m-i~np~~~~y~yDPys~----------~~~~e~~d~~~~l~~-R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~ 176 (313)
+. +....+|++.+|-... .+.....|....-+. =.+++++.+ ..++||+|-|..+......-.+-.+
T Consensus 81 ~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~-G~~~I~~i~g~~~~~~~~~R~~Gf~ 159 (332)
T 2rjo_A 81 VEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMG-GKGGVVALGGIFSNVPAIERKAGLD 159 (332)
T ss_dssp HHHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTT-TCEEEEEEECCTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHHcC-CCCeEEEEECCCCCccHHHHHHHHH
Confidence 11 2234688888875432 222233443332211 122333335 6789999988755443444455567
Q ss_pred HHHHHc-CCcEEEEEeCCCCHHH--------Hhc-CcCCccEEEE
Q 042576 177 KRMEKK-GFDYVVIMMSEISPAR--------VAL-FEDSVDAWIQ 211 (313)
Q Consensus 177 ~ll~~~-Gkk~y~i~v~einp~K--------Lan-f~~~ID~fV~ 211 (313)
+-++++ |.+...+..+..+.+. |+. -+ ++|+++.
T Consensus 160 ~al~~~pgi~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~aI~~ 203 (332)
T 2rjo_A 160 AALKKFPGIQLLDFQVADWNSQKAFPIMQAWMTRFNS-KIKGVWA 203 (332)
T ss_dssp HHHHTCTTEEEEEEEECTTCHHHHHHHHHHHHHHHGG-GEEEEEE
T ss_pred HHHHhCCCcEEEeeccCCCCHHHHHHHHHHHHHhcCC-CeeEEEE
Confidence 778888 8776555556666432 233 34 5888764
No 71
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=60.42 E-value=21 Score=31.10 Aligned_cols=63 Identities=24% Similarity=0.404 Sum_probs=46.5
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH----HhcCc-CCccEEEEecCC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR----VALFE-DSVDAWIQIACP 215 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K----Lanf~-~~ID~fV~iaCP 215 (313)
..++||+|+..+....+..+++-+++.++++|.+..+.. ..-++++ +..+. ..+|.+|+.++.
T Consensus 19 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 86 (293)
T 2iks_A 19 RTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIAC-SEDQPDNEMRCIEHLLQRQVDAIIVSTSL 86 (293)
T ss_dssp CCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEE-CTTCHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEc-CCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 678999999988777788999999999999998766544 3335543 22331 259999988764
No 72
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=60.38 E-value=70 Score=27.87 Aligned_cols=169 Identities=15% Similarity=0.140 Sum_probs=84.1
Q ss_pred eEEEEec----cccHhHHHHHHHHHHhCCCeEEecCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCccc-HHHH-Hhh
Q 042576 39 KLILAGT----IQFASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFH-LEAF-MIS 112 (313)
Q Consensus 39 ~i~Lv~t----iQf~~~l~~~~~~L~~~g~~v~ipq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFH-le~~-mi~ 112 (313)
+|+++.. --|...++.+.+.+++.|+++++-....-...|. ..-...+. ..+|++|+.+...-. ...+ .+.
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~-~~i~~l~~--~~vdgiIi~~~~~~~~~~~~~~~~ 80 (313)
T 3m9w_A 4 KIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSANGNEETQM-SQIENMIN--RGVDVLVIIPYNGQVLSNVVKEAK 80 (313)
T ss_dssp EEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEECTTCHHHHH-HHHHHHHH--TTCSEEEEECSSTTSCHHHHHHHH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCHHHHH-HHHHHHHH--cCCCEEEEeCCChhhhHHHHHHHH
Confidence 5665532 2456667778889999999876522110000000 00000001 237888887643211 1111 233
Q ss_pred CCCceEEEeCCCCCc--c-cccccChHHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHc----CCc
Q 042576 113 NPGIKTFRYDPYLGK--L-FLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKK----GFD 185 (313)
Q Consensus 113 np~~~~y~yDPys~~--~-~~e~~d~~~~l~~R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~----Gkk 185 (313)
..++|++.+|-.... + .....|....-+.=-..+.+.+ ..+++|+|.|..+......-.+-.++-++++ +.+
T Consensus 81 ~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~-G~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~ 159 (313)
T 3m9w_A 81 QEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIV-PQGNYFLMGGSPVDNNAKLFRAGQMKVLKPYVDSGKIK 159 (313)
T ss_dssp TTTCEEEEESSCCTTSCCSEEEEECHHHHHHHHHHHHHHHC-SSEEEEEEESCTTCHHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred HCCCeEEEECCcCCCCCceEEEecCHHHHHHHHHHHHHHhC-CCCcEEEEECCCCCccHHHHHHHHHHHHHhhccCCCEE
Confidence 457899998854332 2 1223343332221111222235 6779999988765544444455566667776 333
Q ss_pred EEEE-EeCCCCHHH--------HhcC-cCCccEEEEe
Q 042576 186 YVVI-MMSEISPAR--------VALF-EDSVDAWIQI 212 (313)
Q Consensus 186 ~y~i-~v~einp~K--------Lanf-~~~ID~fV~i 212 (313)
..-. ..+..++++ |... + ++|+++-.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~ai~~~ 195 (313)
T 3m9w_A 160 VVGDQWVDGWLPENALKIMENALTANNN-KIDAVVAS 195 (313)
T ss_dssp EEEEEECGGGCHHHHHHHHHHHHHHTTT-CCCEEEES
T ss_pred EEeeccCCCcCHHHHHHHHHHHHHhCCC-CeeEEEEC
Confidence 3221 234555543 3444 5 68887654
No 73
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=59.87 E-value=6.8 Score=34.35 Aligned_cols=62 Identities=8% Similarity=0.167 Sum_probs=40.5
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH----HhcC-cCCccEEEEecC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR----VALF-EDSVDAWIQIAC 214 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K----Lanf-~~~ID~fV~iaC 214 (313)
..++||+|+..+.-..+..+++-+++.++++|.+..++. ..-++++ +..+ ...+|.+|+.+.
T Consensus 15 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 81 (289)
T 2fep_A 15 KTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSN-SDQNMEKELHLLNTMLGKQVDGIVFMGG 81 (289)
T ss_dssp -CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE-CTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe-CCCCHHHHHHHHHHHHhCCCCEEEEecC
Confidence 567888888877766677888888888888887755443 3334433 2222 124888887665
No 74
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=59.68 E-value=22 Score=30.99 Aligned_cols=139 Identities=12% Similarity=0.042 Sum_probs=71.9
Q ss_pred CeEEEEe-cc---ccH-hHHHHHHHHHHhCCCeEEecCCCCCCCcc--ccCCCCCCCCCCCCCCeEEEecCCcccHHHHH
Q 042576 38 GKLILAG-TI---QFA-SAIRAAKPELEKQGFKVMIPQSKPLSAGE--VLGCTAPKIPARESDFNLVFIADGRFHLEAFM 110 (313)
Q Consensus 38 ~~i~Lv~-ti---Qf~-~~l~~~~~~L~~~g~~v~ipq~~pls~Ge--vLGCt~~~~~~~~~~d~iv~igdGrFHle~~m 110 (313)
..|+++. ++ -|. ..++.+.+.+++.|+++++-....-...| .+- .... ..+|++|+.+...-. .-..
T Consensus 14 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~---~l~~--~~vdGiIi~~~~~~~-~~~~ 87 (301)
T 3miz_A 14 NTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANTGGSSEREVEIWK---MFQS--HRIDGVLYVTMYRRI-VDPE 87 (301)
T ss_dssp CEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHH---HHHH--TTCSEEEEEEEEEEE-CCCC
T ss_pred CEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHH---HHHh--CCCCEEEEecCCccH-HHHH
Confidence 4577664 22 355 67888999999999997652211000000 000 0001 237888877532111 1111
Q ss_pred hhCCCceEEEeCCCCC---cccccccChHHHHHH-HHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCc
Q 042576 111 ISNPGIKTFRYDPYLG---KLFLEEYDNKGMRET-RKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFD 185 (313)
Q Consensus 111 i~np~~~~y~yDPys~---~~~~e~~d~~~~l~~-R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk 185 (313)
+....+|++.+|-... .+.....|....-+. =.++++ + ..++||+|.|..+......-.+-.++-++++|.+
T Consensus 88 ~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~--~-G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~ 163 (301)
T 3miz_A 88 SGDVSIPTVMINCRPQTRELLPSIEPDDYQGARDLTRYLLE--R-GHRRIGYIRLNPILLGAELRLDAFRRTTSEFGLT 163 (301)
T ss_dssp CTTCCCCEEEEEEECSSTTSSCEEEECHHHHHHHHHHHHHT--T-TCCSEEEEECCTTSHHHHHHHHHHHHHHHHHTCC
T ss_pred HHhCCCCEEEECCCCCCCCCCCEEeeChHHHHHHHHHHHHH--c-CCCeEEEEecCccchhHHHHHHHHHHHHHHcCCC
Confidence 2334678777763322 222233443322111 111222 3 6689999998876554445556667778888865
No 75
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=59.09 E-value=78 Score=27.89 Aligned_cols=169 Identities=12% Similarity=0.151 Sum_probs=80.9
Q ss_pred CeEEEEe-cc---ccHhHHHHHHHHHHhCCCeEEecC-CCCCCCccccCCCCCCCCCCCCCCeEEEecCCcccHH-HH-H
Q 042576 38 GKLILAG-TI---QFASAIRAAKPELEKQGFKVMIPQ-SKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLE-AF-M 110 (313)
Q Consensus 38 ~~i~Lv~-ti---Qf~~~l~~~~~~L~~~g~~v~ipq-~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle-~~-m 110 (313)
++|+++. +. -|...++.+.+.+++.|+++++-. ...-...|+ ..--..+. ..+|++++.+...-.+. .+ .
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~-~~i~~li~--~~vdgiii~~~~~~~~~~~~~~ 80 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQV-QLVNNFVN--QGYDAIIVSAVSPDGLCPALKR 80 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHH-HHHHHHHH--TTCSEEEECCSSSSTTHHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHH-HHHHHHHH--cCCCEEEEeCCCHHHHHHHHHH
Confidence 4577663 22 244455667888888898876521 100000000 00000001 23788877643221111 11 1
Q ss_pred hhCCCceEEEeCCCCCc---cccc-ccChHHHHHHH-HHHHHHH-hhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcC-
Q 042576 111 ISNPGIKTFRYDPYLGK---LFLE-EYDNKGMRETR-KRAIEKA-MKEARTWGIVLGTLGRQGNPRILERLQKRMEKKG- 183 (313)
Q Consensus 111 i~np~~~~y~yDPys~~---~~~e-~~d~~~~l~~R-~~~I~ka-k~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~G- 183 (313)
+....+|++.+|-.... .... ..|..+.-+.= ..+++.. + ..+++++|.|..+-.....-.+-.++-|++++
T Consensus 81 a~~~gipvV~~d~~~~~~~~~~~v~~~D~~~~g~~~~~~L~~~~~~-g~~~i~~i~g~~~~~~~~~r~~g~~~~l~~~~~ 159 (316)
T 1tjy_A 81 AMQRGVKILTWDSDTKPECRSYYINQGTPKQLGSMLVEMAAHQVDK-EKAKVAFFYSSPTVTDQNQWVKEAKAKISQEHP 159 (316)
T ss_dssp HHHTTCEEEEESSCCCGGGCSEEEESCCHHHHHHHHHHHHHHHHCS-SSEEEEEEESCSSCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHCcCEEEEecCCCCCCCceEEEecCCHHHHHHHHHHHHHHHcCC-CCCEEEEEEcCCCChhHHHHHHHHHHHHHhhCC
Confidence 23357899999854321 1112 34433321111 2233322 3 46789999988665444444555666776663
Q ss_pred -CcEEEEEeCCCCHHH--------HhcCcCCccEEEE
Q 042576 184 -FDYVVIMMSEISPAR--------VALFEDSVDAWIQ 211 (313)
Q Consensus 184 -kk~y~i~v~einp~K--------Lanf~~~ID~fV~ 211 (313)
.+......+.-++++ |...+ ++|+++-
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~aI~~ 195 (316)
T 1tjy_A 160 GWEIVTTQFGYNDATKSLQTAEGIIKAYP-DLDAIIA 195 (316)
T ss_dssp TEEEEEEEECTTCHHHHHHHHHHHHHHCS-SCCEEEE
T ss_pred CcEEEEeccCCCCHHHHHHHHHHHHHhCC-CCCEEEE
Confidence 333333334555532 33445 6888664
No 76
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=58.86 E-value=14 Score=30.78 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=42.8
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHH-cCCcEEEEEeCCCCHHHHhcCcCCccEEEEecCCC
Q 042576 155 TWGIVLGTLGRQGNPRILERLQKRMEK-KGFDYVVIMMSEISPARVALFEDSVDAWIQIACPR 216 (313)
Q Consensus 155 ~~GIIvgTLg~Q~~~~ii~~l~~ll~~-~Gkk~y~i~v~einp~KLanf~~~ID~fV~iaCPr 216 (313)
++.||.+|.. -++..+++.+.+.+++ .|.++-++-+.+.+.++|.. .|+ |++++|-
T Consensus 6 kiliiy~S~~-GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~~~~l~~----aD~-ii~gsP~ 62 (188)
T 2ark_A 6 KVLVIYDTRT-GNTKKMAELVAEGARSLEGTEVRLKHVDEATKEDVLW----ADG-LAVGSPT 62 (188)
T ss_dssp EEEEEECCSS-SHHHHHHHHHHHHHHTSTTEEEEEEETTTCCHHHHHH----CSE-EEEEEEC
T ss_pred EEEEEEECCC-cHHHHHHHHHHHHHhhcCCCeEEEEEhhhCCHHHHHh----CCE-EEEEeCc
Confidence 6889999943 3456799999999998 89888889999988877655 455 4456665
No 77
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=58.62 E-value=99 Score=27.41 Aligned_cols=163 Identities=9% Similarity=0.060 Sum_probs=80.3
Q ss_pred CeEEEEe-c---cccHhHHHHHHHHHHhCCCeEEecCCCCCCC--ccccCCCCCCCCCCCCCCeEEEecCCcccHHHHHh
Q 042576 38 GKLILAG-T---IQFASAIRAAKPELEKQGFKVMIPQSKPLSA--GEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMI 111 (313)
Q Consensus 38 ~~i~Lv~-t---iQf~~~l~~~~~~L~~~g~~v~ipq~~pls~--GevLGCt~~~~~~~~~~d~iv~igdGrFHle~~mi 111 (313)
..|+++. + --|...++.+.+.+++.|+.+++.....-.. -+.+- .... ..+|++|+.+...-...--.+
T Consensus 63 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~---~l~~--~~vdGiIi~~~~~~~~~~~~l 137 (339)
T 3h5o_A 63 RTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLR---AYLQ--HRPDGVLITGLSHAEPFERIL 137 (339)
T ss_dssp CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHH---HHHT--TCCSEEEEECSCCCTTHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHH---HHHc--CCCCEEEEeCCCCCHHHHHHH
Confidence 3577664 2 2466678889999999999977532210000 00000 0001 237999887643211111123
Q ss_pred hCCCceEEEeCCCCC-cccccccChHHHHHHHHHHHHH--HhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCc---
Q 042576 112 SNPGIKTFRYDPYLG-KLFLEEYDNKGMRETRKRAIEK--AMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFD--- 185 (313)
Q Consensus 112 ~np~~~~y~yDPys~-~~~~e~~d~~~~l~~R~~~I~k--ak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk--- 185 (313)
....+|++.+|.... .......|....- |. +.+. .+ ..++||+|-|... .....-.+-.++-++++|..
T Consensus 138 ~~~~iPvV~~~~~~~~~~~~V~~D~~~~~--~~-a~~~L~~~-G~~~I~~i~~~~~-~~~~~R~~Gf~~al~~~g~~~~~ 212 (339)
T 3h5o_A 138 SQHALPVVYMMDLADDGRCCVGFSQEDAG--AA-ITRHLLSR-GKRRIGFLGAQLD-ERVMKRLDGYRAALDAADCRDAG 212 (339)
T ss_dssp HHTTCCEEEEESCCSSSCCEEECCHHHHH--HH-HHHHHHHT-TCCSEEEEEESCC-HHHHHHHHHHHHHHHHTTCCCGG
T ss_pred hcCCCCEEEEeecCCCCCeEEEECHHHHH--HH-HHHHHHHC-CCCeEEEEeCCCC-ccHHHHHHHHHHHHHHCCCCCCC
Confidence 334778877753321 1112233432221 11 1111 23 5689999987652 22223344456677888872
Q ss_pred EEEEEeCCCCHHH--------HhcCcCCccEEEE
Q 042576 186 YVVIMMSEISPAR--------VALFEDSVDAWIQ 211 (313)
Q Consensus 186 ~y~i~v~einp~K--------Lanf~~~ID~fV~ 211 (313)
...+.-+..+.+. |...+ ++|+++-
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~ai~~ 245 (339)
T 3h5o_A 213 LEWLDPQPSSMQMGADMLDRALAERP-DCDALFC 245 (339)
T ss_dssp GEEEECSCCCHHHHHHHHHHHHHHCT-TCCEEEE
T ss_pred hheEecCCCCHHHHHHHHHHHHcCCC-CCcEEEE
Confidence 2334445555432 23334 5888764
No 78
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=58.51 E-value=22 Score=31.00 Aligned_cols=64 Identities=16% Similarity=0.284 Sum_probs=45.8
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCC--HHHHhcCc-CCccEEEEecCCC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEIS--PARVALFE-DSVDAWIQIACPR 216 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~ein--p~KLanf~-~~ID~fV~iaCPr 216 (313)
..++||+|+ .+....+..+++-+++.++++|....++....-. .+-+..+. ..+|..|+.+...
T Consensus 11 ~~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 77 (289)
T 3k9c_A 11 SSRLLGVVF-ELQQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRERCEAAILLGTRF 77 (289)
T ss_dssp --CEEEEEE-ETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTTTEEEEEEETCCC
T ss_pred CCCEEEEEE-ecCCchHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 567999999 8877788899999999999999887777665421 12222331 2599999987654
No 79
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=58.37 E-value=9.9 Score=33.15 Aligned_cols=64 Identities=14% Similarity=0.305 Sum_probs=41.9
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH----HhcC-cCCccEEEEecCC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR----VALF-EDSVDAWIQIACP 215 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K----Lanf-~~~ID~fV~iaCP 215 (313)
..++||+|+..+.-..+..+++-+++.++++|.+..++.-+.-++++ +..+ ...+|++|+.++.
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 75 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIA 75 (290)
T ss_dssp -CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC
T ss_pred cCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 56799999998887788899999999999999876554122233332 2222 1259999987653
No 80
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=57.76 E-value=23 Score=30.46 Aligned_cols=64 Identities=9% Similarity=0.204 Sum_probs=47.7
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH----HhcC-cCCccEEEEecCCC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR----VALF-EDSVDAWIQIACPR 216 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K----Lanf-~~~ID~fV~iaCPr 216 (313)
..++||+|+..+....+..+++.+++.++++|.+..++... -++++ +..+ ...+|++|+.++..
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 74 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDAN-ADIEREKTLLRAIGSRGFDGLILQSFSN 74 (276)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECT-TCHHHHHHHHHHHHTTTCSEEEEESSCC
T ss_pred CCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC-CCHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 67899999999887788899999999999999887665544 34433 2222 12599999887754
No 81
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=57.62 E-value=17 Score=31.73 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=47.3
Q ss_pred cCCEEEEEEe----CCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCC--HHHHhcCc-CCccEEEEecCCC
Q 042576 152 EARTWGIVLG----TLGRQGNPRILERLQKRMEKKGFDYVVIMMSEIS--PARVALFE-DSVDAWIQIACPR 216 (313)
Q Consensus 152 ~A~~~GIIvg----TLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~ein--p~KLanf~-~~ID~fV~iaCPr 216 (313)
..++||+|+. .+....+..+++.+++.++++|....++..+... ..-+..+. ..+|.+|+.+...
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 76 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQP 76 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCS
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCC
Confidence 6789999998 7777778889999999999999988887776411 11222221 1599999877643
No 82
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=57.31 E-value=32 Score=29.20 Aligned_cols=56 Identities=18% Similarity=0.291 Sum_probs=45.2
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeC-CCCHHHHhcCc------CCccEEEEe
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMS-EISPARVALFE------DSVDAWIQI 212 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~-einp~KLanf~------~~ID~fV~i 212 (313)
..+|||+|+ .-...+++...+.|++-|.++-+-+.| .=+|++|..|. .++++||.+
T Consensus 3 ~~V~Iimgs---~SD~~v~~~a~~~l~~~gi~~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~ 65 (159)
T 3rg8_A 3 PLVIILMGS---SSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITI 65 (159)
T ss_dssp CEEEEEESS---GGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEE
T ss_pred CeEEEEECc---HHHHHHHHHHHHHHHHcCCCEEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEE
Confidence 368999987 678999999999999999998776666 66899998883 137888843
No 83
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=57.07 E-value=25 Score=28.66 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=45.5
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHh-cCcCCccEEEEecCCC
Q 042576 155 TWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVA-LFEDSVDAWIQIACPR 216 (313)
Q Consensus 155 ~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLa-nf~~~ID~fV~iaCPr 216 (313)
++.||-+|.. -+...+++.|.+.|++.|.++-++-+++..++.+. .+. +.|. |+++||-
T Consensus 2 kv~IvY~S~t-GnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~d~-ii~Gspt 61 (161)
T 3hly_A 2 SVLIGYLSDY-GYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVS-SARG-IVLGTPP 61 (161)
T ss_dssp CEEEEECTTS-TTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHH-HCSE-EEEECCB
T ss_pred EEEEEEECCC-hHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHH-hCCE-EEEEcCC
Confidence 3678888875 35667999999999999999889999999888764 444 4676 4566774
No 84
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=56.94 E-value=34 Score=29.68 Aligned_cols=164 Identities=14% Similarity=0.114 Sum_probs=84.2
Q ss_pred CeEEEEec-c---ccHhHHHHHHHHHHhCCCeEEecCCC--CCCCcc---ccCCCCCCCCCCCCCCeEEEecCCcccHHH
Q 042576 38 GKLILAGT-I---QFASAIRAAKPELEKQGFKVMIPQSK--PLSAGE---VLGCTAPKIPARESDFNLVFIADGRFHLEA 108 (313)
Q Consensus 38 ~~i~Lv~t-i---Qf~~~l~~~~~~L~~~g~~v~ipq~~--pls~Ge---vLGCt~~~~~~~~~~d~iv~igdGrFHle~ 108 (313)
.+|+++.. + -|...++.+.+.+++.|+++++-... +...-+ .+-- ... ..+|++|+.+... ....
T Consensus 9 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~---l~~--~~vdgiIi~~~~~-~~~~ 82 (290)
T 2rgy_A 9 GIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATGCGESTPREQALEAVRF---LIG--RDCDGVVVISHDL-HDED 82 (290)
T ss_dssp CEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECCCSSSCHHHHHHHHHHH---HHH--TTCSEEEECCSSS-CHHH
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCCCchhhhhhHHHHHHH---HHh--cCccEEEEecCCC-CHHH
Confidence 45777642 2 35566778888999999997663221 100001 1100 001 1378988775432 1111
Q ss_pred H-HhhCCCceEEEeCCCCC--cccccccChHHHHHH-HHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC
Q 042576 109 F-MISNPGIKTFRYDPYLG--KLFLEEYDNKGMRET-RKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGF 184 (313)
Q Consensus 109 ~-mi~np~~~~y~yDPys~--~~~~e~~d~~~~l~~-R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gk 184 (313)
+ .+....+|++.+|.... .+.....|..+.-+. =.++++ + ..++||+|.|..+......-.+-.++-++++|.
T Consensus 83 ~~~l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~--~-G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~ 159 (290)
T 2rgy_A 83 LDELHRMHPKMVFLNRAFDALPDASFCPDHRRGGELAAATLIE--H-GHRKLAVISGPFTASDNVERLDGFFDELARHGI 159 (290)
T ss_dssp HHHHHHHCSSEEEESSCCTTSGGGEECCCHHHHHHHHHHHHHH--T-TCCSEEEEESCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhhcCCCEEEEccccCCCCCCEEEeCcHHHHHHHHHHHHH--C-CCceEEEEeCCCCCccHHHHHHHHHHHHHHcCC
Confidence 1 13334688888885432 222233443322111 011222 3 668999999876544334445556677888886
Q ss_pred cEE--EEEeCCCCHHH--------HhcCcCCccEEEE
Q 042576 185 DYV--VIMMSEISPAR--------VALFEDSVDAWIQ 211 (313)
Q Consensus 185 k~y--~i~v~einp~K--------Lanf~~~ID~fV~ 211 (313)
+.. .+..+..+.+. |...+ ++|+++-
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~ 195 (290)
T 2rgy_A 160 ARDSVPLIESDFSPEGGYAATCQLLESKA-PFTGLFC 195 (290)
T ss_dssp CGGGSCEEECCSSHHHHHHHHHHHHHHTC-CCSEEEE
T ss_pred CCCcccEEecCCChhHHHHHHHHHHhCCC-CCcEEEE
Confidence 531 13345555431 22334 5888763
No 85
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=56.92 E-value=13 Score=33.46 Aligned_cols=145 Identities=8% Similarity=0.127 Sum_probs=78.1
Q ss_pred CeEEEEec-c---ccHhHHHHHHHHHHhCCCeEEecCCCCCCCcc--ccCCCCCCCCCCCCCCeEEEecCCcccHHHHHh
Q 042576 38 GKLILAGT-I---QFASAIRAAKPELEKQGFKVMIPQSKPLSAGE--VLGCTAPKIPARESDFNLVFIADGRFHLEAFMI 111 (313)
Q Consensus 38 ~~i~Lv~t-i---Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~Ge--vLGCt~~~~~~~~~~d~iv~igdGrFHle~~mi 111 (313)
..|+++.. + -|...++.+.+.+++.|+++++-.... ...| .+. .+.. ..+|++|+.+. + -.+
T Consensus 65 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~----~l~~-~~vdGiIi~~~----~--~~~ 132 (333)
T 3jvd_A 65 ALVGVIVPDLSNEYYSESLQTIQQDLKAAGYQMLVAEANS-VQAQDVVME----SLIS-IQAAGIIHVPV----V--GSI 132 (333)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECCS-HHHHHHHHH----HHHH-HTCSEEEECCC----T--TCC
T ss_pred CEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEECCCC-hHHHHHHHH----HHHh-CCCCEEEEcch----H--HHH
Confidence 35876642 2 355567778889999999977632211 0000 000 0000 13788888765 1 123
Q ss_pred hCCCceEEEeCCCCC--cccccccChHHHHHHHHHHHHHHh-hcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEE
Q 042576 112 SNPGIKTFRYDPYLG--KLFLEEYDNKGMRETRKRAIEKAM-KEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVV 188 (313)
Q Consensus 112 ~np~~~~y~yDPys~--~~~~e~~d~~~~l~~R~~~I~kak-~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~ 188 (313)
....+|++.+|-... .+.....|.... -|. +.+... ...++||+|.|..+......-.+-.++-++++|.. .+
T Consensus 133 ~~~~iPvV~~~~~~~~~~~~~V~~D~~~~--~~~-a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~-~~ 208 (333)
T 3jvd_A 133 APEGIPMVQLTRGELGPGFPRVLCDDEAG--FFQ-LTESVLGGSGMNIAALVGEESLSTTQERMRGISHAASIYGAE-VT 208 (333)
T ss_dssp C-CCSCEEEECC----CCSCEEEECHHHH--HHH-HHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCE-EE
T ss_pred hhCCCCEEEECccCCCCCCCEEEEChHHH--HHH-HHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHHHHHHCCCC-EE
Confidence 345678888885432 222223343222 121 222222 15689999999865544555566677888899988 44
Q ss_pred EEeCCCCHHH
Q 042576 189 IMMSEISPAR 198 (313)
Q Consensus 189 i~v~einp~K 198 (313)
+..+..+.+.
T Consensus 209 ~~~~~~~~~~ 218 (333)
T 3jvd_A 209 FHFGHYSVES 218 (333)
T ss_dssp EEECCSSHHH
T ss_pred EecCCCCHHH
Confidence 4436666554
No 86
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=56.84 E-value=1e+02 Score=27.09 Aligned_cols=169 Identities=11% Similarity=-0.057 Sum_probs=81.6
Q ss_pred CeEEEEec---cccHhHHHHHHHHHHhC-CCeEEecCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCcccH-HHH-Hh
Q 042576 38 GKLILAGT---IQFASAIRAAKPELEKQ-GFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHL-EAF-MI 111 (313)
Q Consensus 38 ~~i~Lv~t---iQf~~~l~~~~~~L~~~-g~~v~ipq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHl-e~~-mi 111 (313)
.+|+++.. --|...++.+.+.+++. |+++++-.... .+.+-...-...+. ..+|++|+.+...-.. ..+ .+
T Consensus 7 ~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~~~-~~~~~~~~i~~l~~--~~vdgiIi~~~~~~~~~~~~~~~ 83 (325)
T 2x7x_A 7 FRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSAGD-DNSKQAEDVHYFMD--EGVDLLIISANEAAPMTPIVEEA 83 (325)
T ss_dssp CEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEECTT-CHHHHHHHHHHHHH--TTCSEEEECCSSHHHHHHHHHHH
T ss_pred eEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCCCC-CHHHHHHHHHHHHH--cCCCEEEEeCCCHHHHHHHHHHH
Confidence 35776642 12334556677778787 88876522110 00000000000001 2378888775432111 111 13
Q ss_pred hCCCceEEEeCCCCC---cccccccChHHHHHH-HHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHc-CCcE
Q 042576 112 SNPGIKTFRYDPYLG---KLFLEEYDNKGMRET-RKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKK-GFDY 186 (313)
Q Consensus 112 ~np~~~~y~yDPys~---~~~~e~~d~~~~l~~-R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~-Gkk~ 186 (313)
....+|++.+|.... .+.....|....-+. =.+++++.+ ..+++|+|-|..+......-.+-.++-++++ |.+.
T Consensus 84 ~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~-G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~pg~~~ 162 (325)
T 2x7x_A 84 YQKGIPVILVDRKILSDKYTAYIGADNYEIGRSVGNYIASSLK-GKGNIVELTGLSGSTPAMERHQGFMAAISKFPDIKL 162 (325)
T ss_dssp HHTTCCEEEESSCCSSSCSSEEEEECHHHHHHHHHHHHHHHTT-TEEEEEEEESCTTSHHHHHHHHHHHHHHHTCTEEEE
T ss_pred HHCCCeEEEeCCCCCCcceeEEEecCHHHHHHHHHHHHHHHcC-CCceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEE
Confidence 335789888885432 122223343322111 122344334 6689999988754333333445556667777 7665
Q ss_pred EEEEeCCCCHHH--------HhcCcCCccEEEE
Q 042576 187 VVIMMSEISPAR--------VALFEDSVDAWIQ 211 (313)
Q Consensus 187 y~i~v~einp~K--------Lanf~~~ID~fV~ 211 (313)
..+..+..+.+. |...+ ++|+++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~ll~~~~-~~~aI~~ 194 (325)
T 2x7x_A 163 IDKADAAWERGPAEIEMDSMLRRHP-KIDAVYA 194 (325)
T ss_dssp EEEEECTTSHHHHHHHHHHHHHHCS-CCCEEEE
T ss_pred EeeecCCCCHHHHHHHHHHHHHhCC-CCCEEEE
Confidence 444455555431 23334 5888764
No 87
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=55.93 E-value=33 Score=30.62 Aligned_cols=63 Identities=11% Similarity=0.186 Sum_probs=46.2
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHh----cC-cCCccEEEEecCC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVA----LF-EDSVDAWIQIACP 215 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLa----nf-~~~ID~fV~iaCP 215 (313)
..++||+|+..+....+..+++-+++.++++|....+.. +.-++++.. .+ ...+|.+|+.+..
T Consensus 61 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 128 (339)
T 3h5o_A 61 KSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGN-SHYDAGQELQLLRAYLQHRPDGVLITGLS 128 (339)
T ss_dssp --CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEE-CTTCHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEe-CCCChHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 567999999999999999999999999999998865543 444554432 22 1259999987654
No 88
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=55.32 E-value=97 Score=26.34 Aligned_cols=118 Identities=11% Similarity=0.001 Sum_probs=60.7
Q ss_pred CeEEEEe-cc---ccHhHHHHHHHHHHhCCCeEEecCCCCCCCcc--ccCCCCCCCCCCCCCCeEEEecCCcccHHHHHh
Q 042576 38 GKLILAG-TI---QFASAIRAAKPELEKQGFKVMIPQSKPLSAGE--VLGCTAPKIPARESDFNLVFIADGRFHLEAFMI 111 (313)
Q Consensus 38 ~~i~Lv~-ti---Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~Ge--vLGCt~~~~~~~~~~d~iv~igdGrFHle~~mi 111 (313)
.+|+++. ++ -|...++.+.+.+++.|+++++-....-...| .+-- ... ..+|++|+.+... ...--.+
T Consensus 8 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---l~~--~~vdgiIi~~~~~-~~~~~~l 81 (276)
T 3jy6_A 8 KLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRA---IGS--RGFDGLILQSFSN-PQTVQEI 81 (276)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHH---HHT--TTCSEEEEESSCC-HHHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHH---HHh--CCCCEEEEecCCc-HHHHHHH
Confidence 4577664 22 35566777888999999997652211100000 0000 001 2479998887554 2111234
Q ss_pred hCCCceEEEeCCCCCc--ccccccChHHHHHHHHHHHHHH-hhcCCEEEEEEeCCC
Q 042576 112 SNPGIKTFRYDPYLGK--LFLEEYDNKGMRETRKRAIEKA-MKEARTWGIVLGTLG 164 (313)
Q Consensus 112 ~np~~~~y~yDPys~~--~~~e~~d~~~~l~~R~~~I~ka-k~~A~~~GIIvgTLg 164 (313)
....+|++.+|..... +.....|....- |. +.+.. +...+++|+|.|..+
T Consensus 82 ~~~~iPvV~i~~~~~~~~~~~V~~D~~~~g--~~-a~~~L~~~G~~~I~~i~~~~~ 134 (276)
T 3jy6_A 82 LHQQMPVVSVDREMDACPWPQVVTDNFEAA--KA-ATTAFRQQGYQHVVVLTSELE 134 (276)
T ss_dssp HTTSSCEEEESCCCTTCSSCEEECCHHHHH--HH-HHHHHHTTTCCEEEEEEECST
T ss_pred HHCCCCEEEEecccCCCCCCEEEEChHHHH--HH-HHHHHHHcCCCeEEEEecCCC
Confidence 4568899988865332 222334433221 21 11111 116789999998754
No 89
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=54.64 E-value=38 Score=29.40 Aligned_cols=58 Identities=21% Similarity=0.447 Sum_probs=46.3
Q ss_pred CCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeC-CCCHHHHhcCc-----CCccEEEEec
Q 042576 153 ARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMS-EISPARVALFE-----DSVDAWIQIA 213 (313)
Q Consensus 153 A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~-einp~KLanf~-----~~ID~fV~ia 213 (313)
-..+|||+|+ .-...+++...+.|++-|.++-+-+.| -=+|++|..|. .++++||.+|
T Consensus 13 ~~~V~IimGS---~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~A 76 (183)
T 1o4v_A 13 VPRVGIIMGS---DSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGA 76 (183)
T ss_dssp -CEEEEEESC---GGGHHHHHHHHHHHHHTTCEEEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred CCeEEEEecc---HHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEec
Confidence 4579999988 778999999999999999998776666 56899999882 1488887443
No 90
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=54.11 E-value=38 Score=31.92 Aligned_cols=121 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred CCCCCeEEEEe-ccccHhHHHHHHHHHHhCCCeEEecCCCCCCCccccCCCCCCCCCC------CCCCeEEEecCCccc-
Q 042576 34 YSDPGKLILAG-TIQFASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPAR------ESDFNLVFIADGRFH- 105 (313)
Q Consensus 34 f~~~~~i~Lv~-tiQf~~~l~~~~~~L~~~g~~v~ipq~~pls~GevLGCt~~~~~~~------~~~d~iv~igdGrFH- 105 (313)
+.+.+++++++ |.+-......+.+.|+++++++.+|..+.. |.+...... ..+|.+|+||+-...
T Consensus 167 ~~~~~kv~~vsQTT~s~~~~~~iv~~L~~r~p~i~~~~~ntI-------C~AT~~RQ~av~~lA~~vD~miVVGg~nSSN 239 (328)
T 3szu_A 167 VKNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRKDDI-------CYATTNRQEAVRALAEQAEVVLVVGSKNSSN 239 (328)
T ss_dssp CSCTTSEEEEECTTSCHHHHHHHHHHHHHHCTTCBCCSSCSC-------CHHHHHHHHHHHHHHHHCSEEEEECCTTCHH
T ss_pred cCCCCeEEEEEecCCcHHHHHHHHHHHHHhCcccccCCCCCc-------CHHHHHHHHHHHHHHHhCCEEEEeCCCCCch
Q ss_pred ---HHHHHhhCCCceEEEeCCCCCcccccccChHHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHc
Q 042576 106 ---LEAFMISNPGIKTFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKK 182 (313)
Q Consensus 106 ---le~~mi~np~~~~y~yDPys~~~~~e~~d~~~~l~~R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~ 182 (313)
|-.+.-.. ..+.|..|-- ++.+. +-.+ +.+++||--|+ .---.+++.+.+.|++.
T Consensus 240 T~rL~eia~~~-g~~ty~Ie~~------~el~~-----------~wl~-g~~~VGITAGA---STP~~lieeVi~~l~~~ 297 (328)
T 3szu_A 240 SNRLAELAQRM-GKRAFLIDDA------KDIQE-----------EWVK-EVKCVGVTAGA---SAPDILVQNVVARLQQL 297 (328)
T ss_dssp HHHHHHHHHHT-TCEEEEESSG------GGCCH-----------HHHT-TCSEEEEEECT---TCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh-CCCEEEeCCh------HHCCH-----------HHhC-CCCEEEEeecC---CCCHHHHHHHHHHHHHh
Q ss_pred C
Q 042576 183 G 183 (313)
Q Consensus 183 G 183 (313)
|
T Consensus 298 ~ 298 (328)
T 3szu_A 298 G 298 (328)
T ss_dssp T
T ss_pred C
No 91
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=53.64 E-value=19 Score=30.47 Aligned_cols=61 Identities=11% Similarity=0.086 Sum_probs=45.2
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCC-----HHHHhcC-----cCCccEEEEecCC
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEIS-----PARVALF-----EDSVDAWIQIACP 215 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~ein-----p~KLanf-----~~~ID~fV~iaCP 215 (313)
-+||||++..-..=.-.+++--++.|+++|.+..++.|---+ ..+|+.- . .+|++|-++|-
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~-~yDavIaLG~V 83 (157)
T 2i0f_A 13 PHLLIVEARFYDDLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGT-EYDGFVALGTV 83 (157)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCC-CCSEEEEEEEE
T ss_pred cEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCC-CCCEEEEeeee
Confidence 479999987655444466666778888999777777775444 2677765 5 69999999997
No 92
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=53.60 E-value=17 Score=31.58 Aligned_cols=66 Identities=14% Similarity=0.030 Sum_probs=48.3
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCC-CCHHHHh----cC-cCCccEEEEecCCCc
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSE-ISPARVA----LF-EDSVDAWIQIACPRL 217 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~e-inp~KLa----nf-~~~ID~fV~iaCPrl 217 (313)
..++||+|+..+....+..+++-+++.++++|.+..++.... -++++-. .+ ...+|+.|+.++...
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 567999999999888888999999999999998877766654 2544322 22 114999998876543
No 93
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=53.60 E-value=37 Score=29.25 Aligned_cols=64 Identities=8% Similarity=0.061 Sum_probs=48.9
Q ss_pred cCCEEEEEEeCC-CCCCcHHHHHHHHHHHHHc-CCcEEEEEe--CCCCHHHH----hcC-cCCccEEEEecCC
Q 042576 152 EARTWGIVLGTL-GRQGNPRILERLQKRMEKK-GFDYVVIMM--SEISPARV----ALF-EDSVDAWIQIACP 215 (313)
Q Consensus 152 ~A~~~GIIvgTL-g~Q~~~~ii~~l~~ll~~~-Gkk~y~i~v--~einp~KL----anf-~~~ID~fV~iaCP 215 (313)
..++||+|+... .-..+..+++-+++.++++ |....+... +.-++++. .++ ...+|++|+.+..
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 79 (304)
T 3gbv_A 7 KKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTV 79 (304)
T ss_dssp CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSS
T ss_pred CcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 667899999998 7888889999999999999 888777664 45566543 222 1259999988764
No 94
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=53.54 E-value=18 Score=31.26 Aligned_cols=64 Identities=19% Similarity=0.249 Sum_probs=45.6
Q ss_pred cCCEEEEEEe-CCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCC---HHHHhcCc-CCccEEEEecCC
Q 042576 152 EARTWGIVLG-TLGRQGNPRILERLQKRMEKKGFDYVVIMMSEIS---PARVALFE-DSVDAWIQIACP 215 (313)
Q Consensus 152 ~A~~~GIIvg-TLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~ein---p~KLanf~-~~ID~fV~iaCP 215 (313)
..++||+|+. .+.-.....+++.+++.++++|....++....-. .+-+..+. ..+|++|+.+..
T Consensus 10 ~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 78 (289)
T 3g85_A 10 SKPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANIS 78 (289)
T ss_dssp -CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSCC
T ss_pred CCceEEEEeccccchHHHHHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecCC
Confidence 6789999998 7877888899999999999999987766543211 11122332 249999987764
No 95
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=53.17 E-value=1.1e+02 Score=26.10 Aligned_cols=166 Identities=14% Similarity=0.078 Sum_probs=82.5
Q ss_pred CeEEEEecc------ccHhHHHHHHHHHHhCCCeEEecCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCcccHHHH-H
Q 042576 38 GKLILAGTI------QFASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAF-M 110 (313)
Q Consensus 38 ~~i~Lv~ti------Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~~-m 110 (313)
.+|+++..- -|...++.+.+.+++.|+++++-.... .+.+-..+-...+. ..+|++|+.+... .-..+ .
T Consensus 20 ~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~--~~vdgii~~~~~~-~~~~~~~ 95 (296)
T 3brq_A 20 QTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKH-SAEEERQAIQYLLD--LRCDAIMIYPRFL-SVDEIDD 95 (296)
T ss_dssp CEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCTT-SHHHHHHHHHHHHH--TTCSEEEEECSSS-CHHHHHH
T ss_pred ceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHh--cCCCEEEEecCCC-ChHHHHH
Confidence 468876532 245567778888999999876532210 00000000000001 2378988775432 21111 2
Q ss_pred hhC-CCceEEEeCCCCC--cccccccChHHHHHH-HHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcE
Q 042576 111 ISN-PGIKTFRYDPYLG--KLFLEEYDNKGMRET-RKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDY 186 (313)
Q Consensus 111 i~n-p~~~~y~yDPys~--~~~~e~~d~~~~l~~-R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~ 186 (313)
+.. ..+|++.+|-... .+.....|....-+. =.++++ + ..+++|+|.|..+......-.+-.++-++++|.+.
T Consensus 96 l~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~~~a~~~l~~--~-G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~ 172 (296)
T 3brq_A 96 IIDAHSQPIMVLNRRLRKNSSHSVWCDHKQTSFNAVAELIN--A-GHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIAL 172 (296)
T ss_dssp HHHTCSSCEEEESCCCSSSGGGEECCCHHHHHHHHHHHHHH--T-TCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHhcCCCCEEEEccccCCCCCCEEEEchHHHHHHHHHHHHH--C-CCceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCC
Confidence 333 5789988885432 222233443332111 011222 3 56889999887543333444555667788888654
Q ss_pred EE--EEeCCCCHHH--------HhcCcCCccEEEE
Q 042576 187 VV--IMMSEISPAR--------VALFEDSVDAWIQ 211 (313)
Q Consensus 187 y~--i~v~einp~K--------Lanf~~~ID~fV~ 211 (313)
.. +..+..+.+. |...+ ++|+++.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~ 206 (296)
T 3brq_A 173 NEKLIANGKWTPASGAEGVEMLLERGA-KFSALVA 206 (296)
T ss_dssp CGGGEECCCSSHHHHHHHHHHHHTC---CCSEEEE
T ss_pred ChhhEEeCCCChhHHHHHHHHHHhCCC-CCCEEEE
Confidence 21 3344555431 22234 5888764
No 96
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=53.08 E-value=16 Score=31.53 Aligned_cols=63 Identities=11% Similarity=0.222 Sum_probs=44.6
Q ss_pred cCCEEEEEEeC-----CCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHH----hcC-cCCccEEEEecCC
Q 042576 152 EARTWGIVLGT-----LGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARV----ALF-EDSVDAWIQIACP 215 (313)
Q Consensus 152 ~A~~~GIIvgT-----Lg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KL----anf-~~~ID~fV~iaCP 215 (313)
..++||+|+.. +.......+++.+++.++++|.+..++. +.-++++. ..+ ...+|++|+.++.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~vdgiIi~~~~ 79 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMST-GETEEEIFNGVVKMVQGRQIGGIILLYSR 79 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECC-CCSHHHHHHHHHHHHHTTCCCEEEESCCB
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEEe-CCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 67899999999 8888888999999999999997655433 33344432 222 1159999886543
No 97
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=52.74 E-value=17 Score=31.34 Aligned_cols=63 Identities=14% Similarity=0.092 Sum_probs=45.0
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH----HhcCc-CCccEEEEecCC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR----VALFE-DSVDAWIQIACP 215 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K----Lanf~-~~ID~fV~iaCP 215 (313)
..++||+|+..+....+..+++.+++.++++|.+..++.. .-++++ +.++. ..+|++|+.+..
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 71 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDA-GRNDQTQVSQIQTLIAQKPDAIIEQLGN 71 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEEC-TTCHHHHHHHHHHHHHHCCSEEEEESSC
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcC-CCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 5678999999887777778999999999999987766543 345433 22221 148999987664
No 98
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=52.38 E-value=83 Score=28.23 Aligned_cols=148 Identities=11% Similarity=0.126 Sum_probs=74.7
Q ss_pred eEEEEe-cc---ccHhHHHHHHHHHHhCCCeEEecCCCCCCCc-c--ccCCCCCCCCCCCCCCeEEEecCCcccHHHH-H
Q 042576 39 KLILAG-TI---QFASAIRAAKPELEKQGFKVMIPQSKPLSAG-E--VLGCTAPKIPARESDFNLVFIADGRFHLEAF-M 110 (313)
Q Consensus 39 ~i~Lv~-ti---Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~G-e--vLGCt~~~~~~~~~~d~iv~igdGrFHle~~-m 110 (313)
+|+++. ++ -|...++.+.+.+++.|+++++-.... .+. | .+- .... ..+|++|+.+... .-..+ .
T Consensus 68 ~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~---~l~~--~~vdgiI~~~~~~-~~~~~~~ 140 (348)
T 3bil_A 68 TIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNSNE-DATTMSGSLE---FLTS--HGVDGIICVPNEE-CANQLED 140 (348)
T ss_dssp CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEECTT-CHHHHHHHHH---HHHH--TTCSCEEECCCGG-GHHHHHH
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeCCC-CHHHHHHHHH---HHHh--CCCCEEEEeCCCC-ChHHHHH
Confidence 588764 22 355667788889999999876522110 000 0 000 0001 2378888775422 11111 2
Q ss_pred hhCCCceEEEeCCCCC---cccccccChHHH--HHHHHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCc
Q 042576 111 ISNPGIKTFRYDPYLG---KLFLEEYDNKGM--RETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFD 185 (313)
Q Consensus 111 i~np~~~~y~yDPys~---~~~~e~~d~~~~--l~~R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk 185 (313)
+....+|++.+|-... .+.....|.... +..+ ++++ + ..++||+|.|..+......-.+-.++-++++|.+
T Consensus 141 l~~~~iPvV~i~~~~~~~~~~~~V~~D~~~~~~~a~~-~L~~--~-G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~ 216 (348)
T 3bil_A 141 LQKQGMPVVLVDRELPGDSTIPTATSNPQPGIAAAVE-LLAH--N-NALPIGYLSGPMDTSTGRERLEDFKAACANSKIG 216 (348)
T ss_dssp HHHC-CCEEEESSCCSCC-CCCEEEEECHHHHHHHHH-HHHH--T-TCCSEEEECCCTTSHHHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCCCEEEEcccCCCCCCCCEEEeChHHHHHHHHH-HHHH--C-CCCeEEEEeCCCCCccHHHHHHHHHHHHHHcCcC
Confidence 3335788888885432 222222333221 1111 2222 3 6689999988754333334455566778888864
Q ss_pred EEEEEeCCCCHH
Q 042576 186 YVVIMMSEISPA 197 (313)
Q Consensus 186 ~y~i~v~einp~ 197 (313)
.-.+..+..+.+
T Consensus 217 ~~~v~~~~~~~~ 228 (348)
T 3bil_A 217 EQLVFLGGYEQS 228 (348)
T ss_dssp CCEEECCCSSHH
T ss_pred ccEEEcCCCCHH
Confidence 333444555543
No 99
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=52.17 E-value=68 Score=27.42 Aligned_cols=141 Identities=11% Similarity=0.019 Sum_probs=71.9
Q ss_pred CeEEEEec-c---ccHhHHHHHHHHHHhCCCeEEecCCCCCCCccccCCCCCCCCCCCCCCeEEEecCC-cccHHHH-Hh
Q 042576 38 GKLILAGT-I---QFASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADG-RFHLEAF-MI 111 (313)
Q Consensus 38 ~~i~Lv~t-i---Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~GevLGCt~~~~~~~~~~d~iv~igdG-rFHle~~-mi 111 (313)
.+|+++.. + -|...++.+.+.+++.|+++++-....-...|. -+-...+. ..+|++|+.+.. ......+ .+
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~-~~~~~l~~--~~vdgiIi~~~~~~~~~~~~~~~ 82 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQV-SQIQTLIA--QKPDAIIEQLGNLDVLNPWLQKI 82 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHH-HHHHHHHH--HCCSEEEEESSCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHH-HHHHHHHH--cCCCEEEEeCCChhhhHHHHHHH
Confidence 45776642 2 345567788889999999976522110000000 00000000 137898877543 1111111 13
Q ss_pred hCCCceEEEeCCCCC-cccccccChHHHH-HHHHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHc
Q 042576 112 SNPGIKTFRYDPYLG-KLFLEEYDNKGMR-ETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKK 182 (313)
Q Consensus 112 ~np~~~~y~yDPys~-~~~~e~~d~~~~l-~~R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~ 182 (313)
...++|++.+|-... .+.....|....- ..=.+++++.+ ..+++++|.|..+......-.+-.++-++++
T Consensus 83 ~~~~iPvV~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~~~-g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~ 154 (291)
T 3l49_A 83 NDAGIPLFTVDTATPHAINNTTSNNYSIGAELALQMVADLG-GKGNVLVFNGFYSVPVCKIRYDQMKYVLEAF 154 (291)
T ss_dssp HHTTCCEEEESCCCTTCSEEEEECHHHHHHHHHHHHHHHHT-TCEEEEEECSCTTSHHHHHHHHHHHHHHHTC
T ss_pred HHCCCcEEEecCCCCCcCceEecChHHHHHHHHHHHHHHcC-CCceEEEEeCCCCCchHHHHHHHHHHHHHHC
Confidence 335789998885443 2332334433321 11234555556 7889999977754443344455566777777
No 100
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=51.73 E-value=1.2e+02 Score=26.15 Aligned_cols=158 Identities=13% Similarity=0.085 Sum_probs=76.3
Q ss_pred cHhHHHHHHHHHHhCCCeEEecC--CCCCCCcc--ccCCCCCCCCCCCCCCeEEEecCCccc-HHHH-HhhCCCceEEEe
Q 042576 48 FASAIRAAKPELEKQGFKVMIPQ--SKPLSAGE--VLGCTAPKIPARESDFNLVFIADGRFH-LEAF-MISNPGIKTFRY 121 (313)
Q Consensus 48 f~~~l~~~~~~L~~~g~~v~ipq--~~pls~Ge--vLGCt~~~~~~~~~~d~iv~igdGrFH-le~~-mi~np~~~~y~y 121 (313)
|...++.+.+.+++.|+++++-. ...-...| .+- ..+. ..+|++++.+...-. ...+ .+....+|++.+
T Consensus 16 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~ 90 (288)
T 1gud_A 16 WVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFE---DLSN--KNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNL 90 (288)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHH---HHHT--SSEEEEEECCSSSSTTHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHH---HHHH--cCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEE
Confidence 55566778888888999876521 10000000 000 0001 137888876532211 1111 123357899999
Q ss_pred CCCCCc---------c-cccccChHHHHH-HHHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHc-CCcEEEE
Q 042576 122 DPYLGK---------L-FLEEYDNKGMRE-TRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKK-GFDYVVI 189 (313)
Q Consensus 122 DPys~~---------~-~~e~~d~~~~l~-~R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~-Gkk~y~i 189 (313)
|..... + .....|..+.-+ .=.+++++.-...+++|+|-|..+......-.+-.++-++++ |.+...+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~g~~~~~~ 170 (288)
T 1gud_A 91 DEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVAS 170 (288)
T ss_dssp SSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHHHHHHHHHHHTCTTEEEEEE
T ss_pred CCCCCcccccccCCceeEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhHHHHHHHHHHHhCCCcEEEEe
Confidence 864321 2 222334322211 112233331101578999988755333333344456667766 7665444
Q ss_pred EeCCCCHHH--------HhcCcCCccEEEE
Q 042576 190 MMSEISPAR--------VALFEDSVDAWIQ 211 (313)
Q Consensus 190 ~v~einp~K--------Lanf~~~ID~fV~ 211 (313)
..+..+.+. |...+ ++|+++-
T Consensus 171 ~~~~~~~~~~~~~~~~ll~~~~-~~~ai~~ 199 (288)
T 1gud_A 171 QPADWDRIKALDVATNVLQRNP-NIKAIYC 199 (288)
T ss_dssp EECTTCHHHHHHHHHHHHHHCT-TCCEEEE
T ss_pred ecCCccHHHHHHHHHHHHHhCC-CceEEEE
Confidence 455655442 33334 5787653
No 101
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=51.61 E-value=18 Score=29.30 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=37.2
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEecCCC
Q 042576 155 TWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPR 216 (313)
Q Consensus 155 ~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~iaCPr 216 (313)
++.||.+|..+ +...+++.|.+.+... ..+-++-+.+..++. +. +.|.+ +++||-
T Consensus 2 kilIvY~S~tG-nT~~vA~~ia~~l~~~-~~v~~~~~~~~~~~~---l~-~~d~i-i~g~pt 56 (169)
T 1czn_A 2 KIGLFYGTQTG-VTQTIAESIQQEFGGE-SIVDLNDIANADASD---LN-AYDYL-IIGCPT 56 (169)
T ss_dssp CEEEEECCSSS-HHHHHHHHHHHHHTST-TTEEEEEGGGCCGGG---GG-GCSEE-EEECCE
T ss_pred eEEEEEECCCc-HHHHHHHHHHHHhCcc-cceEEEEhhhCCHhH---Hh-hCCEE-EEEecc
Confidence 57899999874 4567888888888654 456677777766554 44 45654 556664
No 102
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=51.23 E-value=34 Score=29.73 Aligned_cols=62 Identities=13% Similarity=0.068 Sum_probs=44.9
Q ss_pred CCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEe-CCCCHHH----HhcC-cCCccEEEEecC
Q 042576 153 ARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMM-SEISPAR----VALF-EDSVDAWIQIAC 214 (313)
Q Consensus 153 A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v-~einp~K----Lanf-~~~ID~fV~iaC 214 (313)
++++|+|+..+.-..+..+++-+++.++++|....+... ++-++++ +..+ ...+|..|+.+.
T Consensus 1 ~~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 68 (288)
T 1gud_A 1 AAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 68 (288)
T ss_dssp CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCS
T ss_pred CcEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 468999999888778888999999999999977655442 4455544 2233 124999988654
No 103
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=51.03 E-value=30 Score=29.92 Aligned_cols=62 Identities=18% Similarity=0.294 Sum_probs=45.0
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHH----hcC-cCCccEEEEecC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARV----ALF-EDSVDAWIQIAC 214 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KL----anf-~~~ID~fV~iaC 214 (313)
..++||+|+..++-..+..+++-+++.++++|.+..++. ..-++++. ..+ ...+|++|+.+.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCN-TESDLARSRSCLTLLSGKMVDGVITMDA 73 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE-CTTCHHHHHHHTHHHHTTCCSEEEECCC
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEe-CCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 667999999988777778899999999999998765544 34455442 222 125999888765
No 104
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=51.01 E-value=35 Score=28.09 Aligned_cols=39 Identities=10% Similarity=0.157 Sum_probs=31.7
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCC
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSE 193 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~e 193 (313)
.++.||.||.. -++..+++.+.+.+++.|.++-++-+.+
T Consensus 6 ~kilii~~S~~-g~T~~la~~i~~~l~~~g~~v~~~~l~~ 44 (200)
T 2a5l_A 6 PYILVLYYSRH-GATAEMARQIARGVEQGGFEARVRTVPA 44 (200)
T ss_dssp CEEEEEECCSS-SHHHHHHHHHHHHHHHTTCEEEEEBCCC
T ss_pred ceEEEEEeCCC-ChHHHHHHHHHHHHhhCCCEEEEEEhhh
Confidence 36889999963 3466799999999999998888887777
No 105
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=50.90 E-value=34 Score=29.33 Aligned_cols=63 Identities=13% Similarity=0.249 Sum_probs=43.5
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH----HhcC-cCCccEEEEecCC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR----VALF-EDSVDAWIQIACP 215 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K----Lanf-~~~ID~fV~iaCP 215 (313)
..++||+|+..+....+..+++.+++.++++|.+..++ -..-++++ +..+ ...+|++|+.++.
T Consensus 6 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgii~~~~~ 73 (289)
T 1dbq_A 6 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILG-NAWNNLEKQRAYLSMMAQKRVDGLLVMCSE 73 (289)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEE-ECTTCHHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEE-cCCCChHHHHHHHHHHHhCCCCEEEEEecc
Confidence 56789999988777777789999999999999876554 34445554 2222 1258998887654
No 106
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=50.35 E-value=67 Score=27.40 Aligned_cols=80 Identities=19% Similarity=0.142 Sum_probs=54.1
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCC---------CHHHHhcC-----cC--CccEEEEecCC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEI---------SPARVALF-----ED--SVDAWIQIACP 215 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~ei---------np~KLanf-----~~--~ID~fV~iaCP 215 (313)
.++++||| ++.+ ..+-+..++.+++.|.+.....-.++ +++.+... .. +.|+ |+++|=
T Consensus 107 g~~rvgvl-t~~~----~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~gada-IvLgCT 180 (223)
T 2dgd_A 107 NVRKLWIG-TPYI----KERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKADA-VYIACT 180 (223)
T ss_dssp TCCEEEEE-ESSC----HHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTSSE-EEECCT
T ss_pred CCCeEEEE-eCCc----hHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCCCE-EEEeCC
Confidence 57899999 5643 45555788889999998766654444 44444321 12 4777 456799
Q ss_pred Ccccc---c--cCCCCCcccCHHHHHH
Q 042576 216 RLSID---W--GDAFTKPLLTPFEAEI 237 (313)
Q Consensus 216 rlsid---~--~~~f~kPvLTPyE~~v 237 (313)
.++.. . ..++.+||+++-++.+
T Consensus 181 ~l~~~~~~~~l~~~~g~PVids~~~~a 207 (223)
T 2dgd_A 181 ALSTYEAVQYLHEDLDMPVVSENAAAM 207 (223)
T ss_dssp TSCCTTHHHHHHHHHTSCEEEHHHHHH
T ss_pred cccHHHHHHHHHHHhCCCEEEhHHHHH
Confidence 99863 2 3357899999998865
No 107
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=49.89 E-value=18 Score=31.31 Aligned_cols=61 Identities=21% Similarity=0.214 Sum_probs=39.7
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHH----hcC-cCCccEEEEecCC
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARV----ALF-EDSVDAWIQIACP 215 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KL----anf-~~~ID~fV~iaCP 215 (313)
++||+|+..++......+++-+++.++++|.+..++. +.-++++. ..+ ...+|++|+.+..
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 68 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFD-SQNDTAKESAHFDAIIAAGYDAIIFNPTD 68 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEE-CTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeC-CCCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 5788888877766777788888888888887655433 34455432 222 1248888876553
No 108
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=48.72 E-value=97 Score=27.37 Aligned_cols=152 Identities=11% Similarity=0.127 Sum_probs=75.7
Q ss_pred CeEEEEec-c---ccHhHHHHHHHHHHhCCCeEEecCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCcccHHHH-Hhh
Q 042576 38 GKLILAGT-I---QFASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAF-MIS 112 (313)
Q Consensus 38 ~~i~Lv~t-i---Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~~-mi~ 112 (313)
.+|+++.. + -|...++.+.+.+++.|+++++-.... .+.+-...-..... ..+|++|+.+.. +....+ .+.
T Consensus 64 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~--~~vdgiI~~~~~-~~~~~~~~l~ 139 (332)
T 2o20_A 64 TTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANSDN-DVEKEEKVLETFLS--KQVDGIVYMGSS-LDEKIRTSLK 139 (332)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHH--TTCSEEEECSSC-CCHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEECCC-ChHHHHHHHHHHHh--CCCCEEEEeCCC-CCHHHHHHHH
Confidence 35887652 2 345567788889999999976522110 00000000000001 237998887642 221211 122
Q ss_pred CCCceEEEeCCCCC--cccccccChHHHH--HHHHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEE-
Q 042576 113 NPGIKTFRYDPYLG--KLFLEEYDNKGMR--ETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYV- 187 (313)
Q Consensus 113 np~~~~y~yDPys~--~~~~e~~d~~~~l--~~R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y- 187 (313)
...+|++.+|-... .+.....|....- ..+ ++++ + ..+++|+|-|..+......-.+-.++-++++|.+..
T Consensus 140 ~~~iPvV~~~~~~~~~~~~~V~~D~~~~~~~a~~-~L~~--~-G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~ 215 (332)
T 2o20_A 140 NSRTPVVLVGTIDGDKEIPSVNIDYHLAAYQSTK-KLID--S-GNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDE 215 (332)
T ss_dssp HHCCCEEEESCCCTTSCSCEEECCHHHHHHHHHH-HHHH--T-TCSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCG
T ss_pred hCCCCEEEEccccCCCCCCEEEeChHHHHHHHHH-HHHH--C-CCCeEEEEeCCcccccHHHHHHHHHHHHHHcCCCCCh
Confidence 34688888885422 2222334433221 111 1222 3 568999998875433333344556677888887543
Q ss_pred -EEEeCCCCHH
Q 042576 188 -VIMMSEISPA 197 (313)
Q Consensus 188 -~i~v~einp~ 197 (313)
.+.-+..+.+
T Consensus 216 ~~~~~~~~~~~ 226 (332)
T 2o20_A 216 NLVFEGNYSYE 226 (332)
T ss_dssp GGEECSCCSHH
T ss_pred hhEEeCCCCHH
Confidence 1334444543
No 109
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=48.29 E-value=37 Score=29.14 Aligned_cols=57 Identities=12% Similarity=0.209 Sum_probs=45.7
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeC-CCCHHHHhcCc-----CCccEEEEec
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMS-EISPARVALFE-----DSVDAWIQIA 213 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~-einp~KLanf~-----~~ID~fV~ia 213 (313)
..+|||+|+ +-...+++...+.|++-|.++-+-+.| -=+|++|..|. .++++||.+|
T Consensus 12 ~~V~IimGS---~SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~A 74 (170)
T 1xmp_A 12 SLVGVIMGS---TSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIAGA 74 (170)
T ss_dssp CSEEEEESS---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEE
T ss_pred CcEEEEECc---HHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEEC
Confidence 468999987 778999999999999999998776665 56899998884 1378877544
No 110
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=47.95 E-value=1.3e+02 Score=25.67 Aligned_cols=158 Identities=13% Similarity=0.079 Sum_probs=74.2
Q ss_pred cHhHHHHHHHHHHhCCCeEEecCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCcccH-HHH-HhhCCCceEEEeCCCC
Q 042576 48 FASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHL-EAF-MISNPGIKTFRYDPYL 125 (313)
Q Consensus 48 f~~~l~~~~~~L~~~g~~v~ipq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHl-e~~-mi~np~~~~y~yDPys 125 (313)
|...++.+.+.+++.|+++++-....-...|. ..-...+. ..+|++|+.+...-.. ..+ .+...++|++.+|...
T Consensus 16 ~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~-~~i~~l~~--~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~ 92 (283)
T 2ioy_A 16 FVTLKNGAEEKAKELGYKIIVEDSQNDSSKEL-SNVEDLIQ--QKVDVLLINPVDSDAVVTAIKEANSKNIPVITIDRSA 92 (283)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEECTTCHHHHH-HHHHHHHH--TTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHHHHHHHHhcCcEEEEecCCCCHHHHH-HHHHHHHH--cCCCEEEEeCCchhhhHHHHHHHHHCCCeEEEecCCC
Confidence 55566778888888899876522110000000 00000001 2378888765321111 111 1333478888888542
Q ss_pred C---cccccccChHHHH-HHHHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHc-CCcEEEEEeCCCCHHH--
Q 042576 126 G---KLFLEEYDNKGMR-ETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKK-GFDYVVIMMSEISPAR-- 198 (313)
Q Consensus 126 ~---~~~~e~~d~~~~l-~~R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~-Gkk~y~i~v~einp~K-- 198 (313)
. .+.....|..+.- ..=.+++++.. ..+++++|-|..+......-.+-.++-++++ |.+...+..+..+.+.
T Consensus 93 ~~~~~~~~V~~D~~~~g~~a~~~L~~~~g-g~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~ 171 (283)
T 2ioy_A 93 NGGDVVCHIASDNVKGGEMAAEFIAKALK-GKGNVVELEGIPGASAARDRGKGFDEAIAKYPDIKIVAKQAADFDRSKGL 171 (283)
T ss_dssp SSSCCSEEEEECHHHHHHHHHHHHHHHTT-TCEEEEEEECCTTCHHHHHHHHHHHHHHTTCTTEEEEEEEECTTCHHHHH
T ss_pred CCcceeEEEecChHHHHHHHHHHHHHHcC-CCceEEEEECCCCCccHHHHHHHHHHHHHhCCCCEEEeeccCCCCHHHHH
Confidence 2 1222223432211 11122333322 3568999988754333333344455666666 6654433445555432
Q ss_pred ------HhcCcCCccEEE
Q 042576 199 ------VALFEDSVDAWI 210 (313)
Q Consensus 199 ------Lanf~~~ID~fV 210 (313)
|+.-+ ++|+++
T Consensus 172 ~~~~~ll~~~~-~~~ai~ 188 (283)
T 2ioy_A 172 SVMENILQAQP-KIDAVF 188 (283)
T ss_dssp HHHHHHHHHCS-CCCEEE
T ss_pred HHHHHHHHhCC-CccEEE
Confidence 23334 578765
No 111
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=47.46 E-value=97 Score=27.52 Aligned_cols=164 Identities=10% Similarity=0.083 Sum_probs=82.2
Q ss_pred eEEEEe----ccccHhHHHHHHHHHHhCCCeEEecCCC--CCCCccccCCCCCCCCCCCCCCeEEEecCCcccHHHHHhh
Q 042576 39 KLILAG----TIQFASAIRAAKPELEKQGFKVMIPQSK--PLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFMIS 112 (313)
Q Consensus 39 ~i~Lv~----tiQf~~~l~~~~~~L~~~g~~v~ipq~~--pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~~mi~ 112 (313)
.|+++. +--|...++.+.+.+++.|+.+++.... +...-+.+- ..+. ..+|++|+.+...-...--.+.
T Consensus 70 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~---~l~~--~~vdGiIi~~~~~~~~~~~~l~ 144 (344)
T 3kjx_A 70 LVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVTDYLPEKEEKVLY---EMLS--WRPSGVIIAGLEHSEAARAMLD 144 (344)
T ss_dssp EEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECTTCHHHHHHHHH---HHHT--TCCSEEEEECSCCCHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHH---HHHh--CCCCEEEEECCCCCHHHHHHHH
Confidence 588664 2245666788999999999997653221 100000000 0001 1379998876432111111233
Q ss_pred CCCceEEEe-CCCC-CcccccccChHHHHHH-HHHHHHHHhhcCCEEEEEEeCCCC-CCcHHHHHHHHHHHHHcCCcEE-
Q 042576 113 NPGIKTFRY-DPYL-GKLFLEEYDNKGMRET-RKRAIEKAMKEARTWGIVLGTLGR-QGNPRILERLQKRMEKKGFDYV- 187 (313)
Q Consensus 113 np~~~~y~y-DPys-~~~~~e~~d~~~~l~~-R~~~I~kak~~A~~~GIIvgTLg~-Q~~~~ii~~l~~ll~~~Gkk~y- 187 (313)
...+|++.+ |... ........|....-+. =.++++ + ..+++|+|.|.... .....-.+-.++-++++|.+.-
T Consensus 145 ~~~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~--~-G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~ 221 (344)
T 3kjx_A 145 AAGIPVVEIMDSDGKPVDAMVGISHRRAGREMAQAILK--A-GYRRIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIED 221 (344)
T ss_dssp HCSSCEEEEEECSSCCSSEEEEECHHHHHHHHHHHHHH--H-TCCSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred hCCCCEEEEeCCCCCCCCCEEEECcHHHHHHHHHHHHH--C-CCCeEEEEecCcccCccHHHHHHHHHHHHHHcCCCCCh
Confidence 457888877 3222 2222223343222111 011222 3 66789999887522 2223344556677888887643
Q ss_pred -EEEeCCCCHHH--------HhcCcCCccEEEE
Q 042576 188 -VIMMSEISPAR--------VALFEDSVDAWIQ 211 (313)
Q Consensus 188 -~i~v~einp~K--------Lanf~~~ID~fV~ 211 (313)
.+.-+..+.+. |...+ ++|+++-
T Consensus 222 ~~~~~~~~~~~~~~~~~~~ll~~~~-~~~ai~~ 253 (344)
T 3kjx_A 222 REFYSGGSALAKGREMTQAMLERSP-DLDFLYY 253 (344)
T ss_dssp EEECSSCCCHHHHHHHHHHHHHHST-TCCEEEE
T ss_pred heEEeCCCCHHHHHHHHHHHHhcCC-CCCEEEE
Confidence 23335555432 33445 6888763
No 112
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=47.34 E-value=19 Score=32.52 Aligned_cols=63 Identities=16% Similarity=0.199 Sum_probs=44.7
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHh----cC-cCCccEEEEecCC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVA----LF-EDSVDAWIQIACP 215 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLa----nf-~~~ID~fV~iaCP 215 (313)
..++||+|+..+.-..+..+++.+++.++++|....+.. +.-++++.. .+ ...+|.+|+.+..
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 136 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGY-TAYSPEREEQLVETMLRRRPEAMVLSYDG 136 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEE-CTTCHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEe-CCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 567899999998878888999999999999998875554 344554432 22 1249999987654
No 113
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=46.83 E-value=36 Score=30.66 Aligned_cols=62 Identities=18% Similarity=0.217 Sum_probs=43.4
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH----HhcC-cCCccEEEEec
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR----VALF-EDSVDAWIQIA 213 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K----Lanf-~~~ID~fV~ia 213 (313)
..++||+|+..+.-..+..+++.+++.++++|....+....+-.+++ |..+ ...+|.+|+.+
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~~vdGiIi~~ 126 (349)
T 1jye_A 60 QSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINY 126 (349)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHHHTTTCSCEEEES
T ss_pred CCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeCCCCcHHHHHHHHHHHHHCCCCEEEEec
Confidence 56789999988877777789999999999999887665554433433 3333 12599988874
No 114
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=46.34 E-value=66 Score=29.88 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=73.4
Q ss_pred CCCeEEEEe-ccccHhHHHHHHHHHHhCCCeEEecCCCCCCCccccCCCCCCCCC------CCCCCeEEEecCCcc----
Q 042576 36 DPGKLILAG-TIQFASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPA------RESDFNLVFIADGRF---- 104 (313)
Q Consensus 36 ~~~~i~Lv~-tiQf~~~l~~~~~~L~~~g~~v~ipq~~pls~GevLGCt~~~~~~------~~~~d~iv~igdGrF---- 104 (313)
..+++++++ |.+-......+.+.|+++++++.+... =|.+..... ...+|.+|+||+-..
T Consensus 155 ~~~kv~~vsQTT~s~~~~~~iv~~L~~r~p~~~~~~t---------IC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~ 225 (297)
T 3dnf_A 155 KHERVGIVAQTTQNEEFFKEVVGEIALWVKEVKVINT---------ICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTR 225 (297)
T ss_dssp GCSEEEEEECTTCCHHHHHHHHHHHHHHSSEEEEECC---------CCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHH
T ss_pred CCCcEEEEEecCCcHHHHHHHHHHHHHhCCCCCCCCC---------ccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhH
Confidence 346888776 667777788899999988887653211 154432100 024799999987432
Q ss_pred cHHHHHhhCCCceEEEeCCCCCcccccccChHHHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC
Q 042576 105 HLEAFMISNPGIKTFRYDPYLGKLFLEEYDNKGMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGF 184 (313)
Q Consensus 105 Hle~~mi~np~~~~y~yDPys~~~~~e~~d~~~~l~~R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gk 184 (313)
+|-.+.-.. ..+.|..|--. +.+.+ + .. +.+++||--|+ .---.+++.+.+.|++..+
T Consensus 226 rL~eia~~~-~~~ty~Ie~~~------el~~~-w----------l~-~~~~VGITAGA---STP~~li~eVi~~l~~~~~ 283 (297)
T 3dnf_A 226 RLYYISKEL-NPNTYHIETAE------ELQPE-W----------FR-GVKRVGISAGA---STPDWIIEQVKSRIQEICE 283 (297)
T ss_dssp HHHHHHHHH-CSSEEEESSGG------GCCGG-G----------GT-TCSEEEEEECT---TCCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhc-CCCEEEeCChH------HCCHH-H----------hC-CCCEEEEeecC---CCCHHHHHHHHHHHHHhcc
Confidence 354444332 34678777432 23322 1 25 78899998876 5566788888888887644
No 115
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=46.12 E-value=28 Score=29.59 Aligned_cols=60 Identities=15% Similarity=0.033 Sum_probs=39.8
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEe-CCCCHHH----HhcCc-CC-ccEEEEecC
Q 042576 155 TWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMM-SEISPAR----VALFE-DS-VDAWIQIAC 214 (313)
Q Consensus 155 ~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v-~einp~K----Lanf~-~~-ID~fV~iaC 214 (313)
+||+|+..+....+..+++-+++.++++|.+..++.. ++-++++ +.++- .. +|++|+.++
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~ 68 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPN 68 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCS
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 5788888877777778888888888888876555443 3455543 22221 14 788887765
No 116
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=45.91 E-value=38 Score=29.04 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=42.4
Q ss_pred cCCEEEEEEeC--CCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH----HhcC-cCCccEEEEecC
Q 042576 152 EARTWGIVLGT--LGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR----VALF-EDSVDAWIQIAC 214 (313)
Q Consensus 152 ~A~~~GIIvgT--Lg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K----Lanf-~~~ID~fV~iaC 214 (313)
...+||+|+.. +....+..+++.+++.++++|.+..++ -..-++++ +..+ ...+|++|..+.
T Consensus 18 ~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 86 (296)
T 3brq_A 18 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLA-DGKHSAEEERQAIQYLLDLRCDAIMIYPR 86 (296)
T ss_dssp -CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEE-CCTTSHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEE-eCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 56789999987 777788889999999999999876544 33445543 2222 125999888765
No 117
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=45.82 E-value=49 Score=29.46 Aligned_cols=63 Identities=13% Similarity=0.240 Sum_probs=46.4
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH----HhcCc-CCccEEEEecCC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR----VALFE-DSVDAWIQIACP 215 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K----Lanf~-~~ID~fV~iaCP 215 (313)
..++||+|+..+....+..+++-+++.++++|.+..+. -+.-++++ +..+. ..+|.+|+.+..
T Consensus 57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 124 (340)
T 1qpz_A 57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILG-NAWNNLEKQRAYLSMMAQKRVDGLLVMCSE 124 (340)
T ss_dssp CCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEE-ECTTCHHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEE-eCCCCHHHHHHHHHHHHcCCCCEEEEeCCC
Confidence 67899999998877777889999999999999876553 34456655 23331 259999987654
No 118
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=45.32 E-value=41 Score=27.76 Aligned_cols=39 Identities=10% Similarity=0.063 Sum_probs=32.1
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCC
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEI 194 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~ei 194 (313)
.++-||.|+ .-++..+++.+.+.+++.|.++-++-+.+.
T Consensus 5 mkilii~~S--~g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 43 (199)
T 2zki_A 5 PNILVLFYG--YGSIVELAKEIGKGAEEAGAEVKIRRVRET 43 (199)
T ss_dssp CEEEEEECC--SSHHHHHHHHHHHHHHHHSCEEEEEECCCC
T ss_pred cEEEEEEeC--ccHHHHHHHHHHHHHHhCCCEEEEEehhHh
Confidence 468899999 335677999999999999999888888775
No 119
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=45.13 E-value=51 Score=29.26 Aligned_cols=63 Identities=16% Similarity=0.091 Sum_probs=45.9
Q ss_pred cCCEEEEEEeC--CCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHH----hcCc-CCccEEEEecCC
Q 042576 152 EARTWGIVLGT--LGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARV----ALFE-DSVDAWIQIACP 215 (313)
Q Consensus 152 ~A~~~GIIvgT--Lg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KL----anf~-~~ID~fV~iaCP 215 (313)
..++||+|+.. +....+..+++.+++.++++|....++. +.-++++- ..+. ..+|.+|+.+..
T Consensus 60 ~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 129 (338)
T 3dbi_A 60 STQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLAD-GKHSAEEERQAIQYLLDLRCDAIMIYPRF 129 (338)
T ss_dssp CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEE-CTTSHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred CCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEe-CCCChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 56899999998 8777888999999999999998766554 44455432 2221 148999887643
No 120
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=45.08 E-value=26 Score=30.34 Aligned_cols=32 Identities=13% Similarity=-0.040 Sum_probs=18.0
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCc
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGFD 185 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk 185 (313)
.+||+|+...+......+++-+++.++++|.+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~ 36 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFNLN 36 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEE
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHcCCE
Confidence 45666665555444555566666666666543
No 121
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=44.91 E-value=31 Score=29.40 Aligned_cols=63 Identities=14% Similarity=0.272 Sum_probs=42.6
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH----HhcC-cCCccEEEEecCC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR----VALF-EDSVDAWIQIACP 215 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K----Lanf-~~~ID~fV~iaCP 215 (313)
..++||+|+..+....+..+++-+++.++++|.+..++.. .-++++ +..+ ...+|++|+.++.
T Consensus 2 ~s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgii~~~~~ 69 (275)
T 3d8u_A 2 NAYSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYS-DYSIEQEEKLLSTFLESRPAGVVLFGSE 69 (275)
T ss_dssp --CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEEC-TTCHHHHHHHHHHHHTSCCCCEEEESSC
T ss_pred CceEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEcC-CCCHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3568999998887777778999999999999987655433 334443 2222 1258998887653
No 122
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=44.50 E-value=40 Score=29.88 Aligned_cols=163 Identities=10% Similarity=0.108 Sum_probs=81.7
Q ss_pred CeEEEEec----cccHhHHHHHHHHHHhCCCeEEecCCC--CCCCccccCCCCCCCCCCCCCCeEEEecCCcccHHHH-H
Q 042576 38 GKLILAGT----IQFASAIRAAKPELEKQGFKVMIPQSK--PLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAF-M 110 (313)
Q Consensus 38 ~~i~Lv~t----iQf~~~l~~~~~~L~~~g~~v~ipq~~--pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~~-m 110 (313)
.+|+++.. --|...++.+.+.+++.|+++++-... +...-+.+- .... ..+|++|+.+... .-..+ .
T Consensus 61 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~---~l~~--~~vdgiI~~~~~~-~~~~~~~ 134 (332)
T 2hsg_A 61 TTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLN---NMLG--KQVDGIIFMSGNV-TEEHVEE 134 (332)
T ss_dssp CEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEECCSHHHHHHHHHH---HTSC--CSSCCEEECCSSC-CHHHHHH
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeCCCChHHHHHHHH---HHHh--CCCcEEEEecCCC-CHHHHHH
Confidence 35887642 235566778888999999997653211 000000110 0011 1378888776432 11222 2
Q ss_pred hhCCCceEEEeCCCCC--cccccccChHHHHHHHHHHHHHHh-hcCCEEEEEEeCC-CCCCcHHHHHHHHHHHHHcCCcE
Q 042576 111 ISNPGIKTFRYDPYLG--KLFLEEYDNKGMRETRKRAIEKAM-KEARTWGIVLGTL-GRQGNPRILERLQKRMEKKGFDY 186 (313)
Q Consensus 111 i~np~~~~y~yDPys~--~~~~e~~d~~~~l~~R~~~I~kak-~~A~~~GIIvgTL-g~Q~~~~ii~~l~~ll~~~Gkk~ 186 (313)
+....+|++.+|.... .+.....|.... -|. +.+... ...++||+|-|.. +......-.+-.++-++++|.+.
T Consensus 135 l~~~~iPvV~~~~~~~~~~~~~V~~D~~~~--~~~-a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~ 211 (332)
T 2hsg_A 135 LKKSPVPVVLAASIESTNQIPSVTIDYEQA--AFD-AVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGYKRALTESGLPV 211 (332)
T ss_dssp HTTSSSCEEEESCCCSCTTSCEEEECHHHH--HHH-HHHHHHTTTCSCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCC
T ss_pred HHhCCCCEEEEccccCCCCCCEEEEChHHH--HHH-HHHHHHHCCCCEEEEEeCCcccCccHHHHHHHHHHHHHHcCCCC
Confidence 3345789988885432 222223343322 121 222221 1568899998875 32222233445667778888654
Q ss_pred E--EEEeCCCCHHH--------HhcCcCCccEEE
Q 042576 187 V--VIMMSEISPAR--------VALFEDSVDAWI 210 (313)
Q Consensus 187 y--~i~v~einp~K--------Lanf~~~ID~fV 210 (313)
. .+..+..+.+. |..-+ ++|+++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~ai~ 244 (332)
T 2hsg_A 212 RDSYIVEGDYTYDSGIEAVEKLLEEDE-KPTAIF 244 (332)
T ss_dssp CGGGEEECCSSHHHHHHHHHHHHHSSS-CCSEEE
T ss_pred ChheEEeCCCCHHHHHHHHHHHHcCCC-CCeEEE
Confidence 2 13345555432 23334 578766
No 123
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=44.36 E-value=22 Score=28.77 Aligned_cols=55 Identities=15% Similarity=0.261 Sum_probs=37.0
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEecCCC
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPR 216 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~iaCPr 216 (313)
.++.||.+|..+ +...+++.|.+.+.+. .+-++-+.+..++. +. +.|.+ ++++|-
T Consensus 2 mkilIiY~S~tG-nT~~vA~~ia~~l~~~--~v~~~~~~~~~~~~---l~-~~d~i-i~g~p~ 56 (169)
T 1obo_A 2 KKIGLFYGTQTG-KTESVAEIIRDEFGND--VVTLHDVSQAEVTD---LN-DYQYL-IIGCPT 56 (169)
T ss_dssp CSEEEEECCSSS-HHHHHHHHHHHHHCTT--TEEEEETTTCCGGG---GG-GCSEE-EEEEEE
T ss_pred CeEEEEEECCCc-hHHHHHHHHHHHhCcC--CcEEEEcccCCHHH---Hh-hCCEE-EEEEee
Confidence 468899999864 4567888888888654 56677777776554 44 35654 445554
No 124
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=44.19 E-value=94 Score=27.91 Aligned_cols=117 Identities=13% Similarity=0.039 Sum_probs=60.4
Q ss_pred CCCeEEEecCCcccHHHHHhhCCCceEEEeCCCC--CcccccccChHHHHHH-HHHHHHHHhhcCCEEEEEEeCCCC---
Q 042576 92 SDFNLVFIADGRFHLEAFMISNPGIKTFRYDPYL--GKLFLEEYDNKGMRET-RKRAIEKAMKEARTWGIVLGTLGR--- 165 (313)
Q Consensus 92 ~~d~iv~igdGrFHle~~mi~np~~~~y~yDPys--~~~~~e~~d~~~~l~~-R~~~I~kak~~A~~~GIIvgTLg~--- 165 (313)
.+|++|+.+...-...--.+....+|++.+|-.. ..+.....|....-+. =.++++ + ..++||+|.+.++.
T Consensus 128 ~vdGiIi~~~~~~~~~~~~l~~~~iPvV~i~~~~~~~~~~~V~~D~~~~~~~a~~~L~~--~-G~r~I~~i~~~~~~~~~ 204 (366)
T 3h5t_A 128 AVDGVVIYSVAKGDPHIDAIRARGLPAVIADQPAREEGMPFIAPNNRKAIAPAAQALID--A-GHRKIGILSIRLDRANN 204 (366)
T ss_dssp CCSCEEEESCCTTCHHHHHHHHHTCCEEEESSCCSCTTCCEEEECHHHHTHHHHHHHHH--T-TCCSEEEEEECCSSSCC
T ss_pred CCCEEEEecCCCChHHHHHHHHCCCCEEEECCccCCCCCCEEEeChHHHHHHHHHHHHH--C-CCCcEEEEecccccccc
Confidence 4789888765322211112233477888888543 2232233343222110 011222 4 67899999954432
Q ss_pred --------------CCcHHHHHHHHHHHHHcCCcE---EEEEeCCCCHHH--------HhcCcCCccEEEEe
Q 042576 166 --------------QGNPRILERLQKRMEKKGFDY---VVIMMSEISPAR--------VALFEDSVDAWIQI 212 (313)
Q Consensus 166 --------------Q~~~~ii~~l~~ll~~~Gkk~---y~i~v~einp~K--------Lanf~~~ID~fV~i 212 (313)
.....-++-.++-|+++|... .++..+..+++. |...+ ++|+++-.
T Consensus 205 ~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~ai~~~ 275 (366)
T 3h5t_A 205 DGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELLETHP-DLTAVLCT 275 (366)
T ss_dssp CEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESSCCHHHHHHHHHHHHHHCT-TCCEEEES
T ss_pred cCccccccccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcCCCCHHHHHHHHHHHHcCCC-CCcEEEEC
Confidence 222344555677788888763 344445556542 33334 58887753
No 125
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=44.06 E-value=57 Score=28.90 Aligned_cols=61 Identities=10% Similarity=0.221 Sum_probs=43.3
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHH----hcC-cCCccEEEEecC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARV----ALF-EDSVDAWIQIAC 214 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KL----anf-~~~ID~fV~iaC 214 (313)
..++||+|+..++...+..+++-+++.++++|....++. ..-++++. ..+ ...+|.+| .+.
T Consensus 59 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiI-~~~ 124 (330)
T 3ctp_A 59 NSKTIGLMVPNISNPFFNQMASVIEEYAKNKGYTLFLCN-TDDDKEKEKTYLEVLQSHRVAGII-ASR 124 (330)
T ss_dssp -CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEE-CTTCHHHHHHHHHHHHHTTCSEEE-EET
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHCCCEEEEEe-CCCChHHHHHHHHHHHhCCCCEEE-ECC
Confidence 567899999888777778899999999999998766543 34455432 222 12599998 654
No 126
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=43.97 E-value=29 Score=30.11 Aligned_cols=63 Identities=11% Similarity=0.064 Sum_probs=41.3
Q ss_pred cCCEEEEEEeCCCC--CCcHHHHHHHHHHHHHcCCcEEEEEeCCC---CHHHHhcC-cCCccEEEEecC
Q 042576 152 EARTWGIVLGTLGR--QGNPRILERLQKRMEKKGFDYVVIMMSEI---SPARVALF-EDSVDAWIQIAC 214 (313)
Q Consensus 152 ~A~~~GIIvgTLg~--Q~~~~ii~~l~~ll~~~Gkk~y~i~v~ei---np~KLanf-~~~ID~fV~iaC 214 (313)
..++||+|+..+.. .....+++.+++.++++|....++....- ..+-+..+ ...+|++|+.+.
T Consensus 7 ~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 7 KTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKI 75 (288)
T ss_dssp CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESC
T ss_pred CCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecC
Confidence 67889999988764 66778899999999998877655443321 11112222 125899887653
No 127
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=43.90 E-value=35 Score=29.59 Aligned_cols=62 Identities=15% Similarity=0.072 Sum_probs=39.8
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHH-------HHhcCc-CCccEEEEecC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPA-------RVALFE-DSVDAWIQIAC 214 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~-------KLanf~-~~ID~fV~iaC 214 (313)
..++||+|+..++...+..+++-+++.++++|.+..++... -+++ .+..+. ..+|.+|+.+.
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 76 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATGC-GESTPREQALEAVRFLIGRDCDGVVVISH 76 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECCC-SSSCHHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeCC-CchhhhhhHHHHHHHHHhcCccEEEEecC
Confidence 56789999887766667788888888888888775543332 2221 233331 24888887664
No 128
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=43.79 E-value=42 Score=30.02 Aligned_cols=62 Identities=13% Similarity=0.163 Sum_probs=46.0
Q ss_pred CCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHh----cC-cCCccEEEEecCC
Q 042576 153 ARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVA----LF-EDSVDAWIQIACP 215 (313)
Q Consensus 153 A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLa----nf-~~~ID~fV~iaCP 215 (313)
.++||+|+..+.-..+..+++.+++.++++|....+. ...-++++.. .+ ...+|.+|+.+..
T Consensus 68 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~-~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~ 134 (344)
T 3kjx_A 68 VNLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVG-VTDYLPEKEEKVLYEMLSWRPSGVIIAGLE 134 (344)
T ss_dssp CSEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEE-ECTTCHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEE-eCCCCHHHHHHHHHHHHhCCCCEEEEECCC
Confidence 4689999999988889999999999999999887544 3444555432 22 1249999987643
No 129
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=43.65 E-value=1.5e+02 Score=25.12 Aligned_cols=139 Identities=12% Similarity=0.084 Sum_probs=72.3
Q ss_pred CeEEEEec-c---ccHhHHHHHHHHHHhCCCeEEecCCCCCCCcc--ccCCCCCCCCCCCCCCeEEEecCCc----ccHH
Q 042576 38 GKLILAGT-I---QFASAIRAAKPELEKQGFKVMIPQSKPLSAGE--VLGCTAPKIPARESDFNLVFIADGR----FHLE 107 (313)
Q Consensus 38 ~~i~Lv~t-i---Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~Ge--vLGCt~~~~~~~~~~d~iv~igdGr----FHle 107 (313)
.+|+++.. + -|...++.+.+.+++.|+++++-....-...| .+- .... ..+|++|+.+... .+..
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~---~l~~--~~vdgiIi~~~~~~~~~~~~~ 90 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLE---NLLS--QHIDGLIVEPTKSALQTPNIG 90 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHH---HHHH--TCCSEEEECCSSTTSCCTTHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHH---HHHH--CCCCEEEEecccccccCCcHH
Confidence 46876642 2 35566778889999999997652211000000 000 0001 2378988876421 2222
Q ss_pred HH-HhhCCCceEEEeCCCCC--cccccccChHHHHHHHHHHHHH--HhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHc
Q 042576 108 AF-MISNPGIKTFRYDPYLG--KLFLEEYDNKGMRETRKRAIEK--AMKEARTWGIVLGTLGRQGNPRILERLQKRMEKK 182 (313)
Q Consensus 108 ~~-mi~np~~~~y~yDPys~--~~~~e~~d~~~~l~~R~~~I~k--ak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~ 182 (313)
.+ .+....+|++.+|-... .+.....|....- |. +.+. .+ ..+++|+|.|... .....-.+-.++-++++
T Consensus 91 ~~~~~~~~~iPvV~~~~~~~~~~~~~V~~d~~~~~--~~-a~~~L~~~-G~~~i~~i~~~~~-~~~~~R~~gf~~~l~~~ 165 (298)
T 3tb6_A 91 YYLNLEKNGIPFAMINASYAELAAPSFTLDDVKGG--MM-AAEHLLSL-GHTHMMGIFKADD-TQGVKRMNGFIQAHRER 165 (298)
T ss_dssp HHHHHHHTTCCEEEESSCCTTCSSCEEEECHHHHH--HH-HHHHHHHT-TCCSEEEEEESSS-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCEEEEecCcCCCCCCEEEeCcHHHH--HH-HHHHHHHC-CCCcEEEEcCCCC-ccHHHHHHHHHHHHHHc
Confidence 22 23345789998885433 2222233433221 21 1111 13 5678999988654 33334455567778888
Q ss_pred CCcE
Q 042576 183 GFDY 186 (313)
Q Consensus 183 Gkk~ 186 (313)
|.+.
T Consensus 166 g~~~ 169 (298)
T 3tb6_A 166 ELFP 169 (298)
T ss_dssp TCCC
T ss_pred CCCC
Confidence 8653
No 130
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=42.85 E-value=52 Score=28.34 Aligned_cols=60 Identities=18% Similarity=0.273 Sum_probs=41.3
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH----HhcC-cCCccEEEEecC
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR----VALF-EDSVDAWIQIAC 214 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K----Lanf-~~~ID~fV~iaC 214 (313)
++||+|+..+.-..+..+++.+++.++++|....+. .+.-++++ +..+ ...+|++|+.+.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~-~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVE-DSQNDSSKELSNVEDLIQQKVDVLLINPV 66 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEE-ECTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEe-cCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 578999988877777889999999999999875543 34445543 2222 124898887553
No 131
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=42.64 E-value=29 Score=30.95 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeC
Q 042576 139 RETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMS 192 (313)
Q Consensus 139 l~~R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~ 192 (313)
++.......+.+ .++++.|. | +||-|--.+.-.|-..|.++|+++.+|=++
T Consensus 28 l~~~l~~~~~~~-~~~vI~v~-~-KGGvGKTT~a~nLA~~La~~G~~VlliD~D 78 (307)
T 3end_A 28 VQVHLDEADKIT-GAKVFAVY-G-KGGIGKSTTSSNLSAAFSILGKRVLQIGCD 78 (307)
T ss_dssp -------------CCEEEEEE-C-STTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred hhhhhccccccC-CceEEEEE-C-CCCccHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 333333334556 77888888 7 999999999999999999999998888766
No 132
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=42.55 E-value=1.2e+02 Score=27.99 Aligned_cols=60 Identities=20% Similarity=0.214 Sum_probs=45.5
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHh-cCcCCccEEEEecCCC
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVA-LFEDSVDAWIQIACPR 216 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLa-nf~~~ID~fV~iaCPr 216 (313)
+++.|+.+|.. -+...+++.+.+.+++.|.++-++-+.+.++..+. .+. +.|++| +++|-
T Consensus 257 ~kv~iiy~S~~-GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~-~~D~ii-igsP~ 317 (414)
T 2q9u_A 257 KKVTVVLDSMY-GTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTY-DSGAVA-FASPT 317 (414)
T ss_dssp SEEEEEECCSS-SHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHH-TCSEEE-EECCC
T ss_pred CeEEEEEECCC-chHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHH-hCCEEE-EEcCc
Confidence 58999999974 35678999999999999998888999888876332 444 467654 55665
No 133
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=42.49 E-value=50 Score=28.21 Aligned_cols=60 Identities=23% Similarity=0.279 Sum_probs=43.5
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH----HhcCc-CCccEEEEecC
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR----VALFE-DSVDAWIQIAC 214 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K----Lanf~-~~ID~fV~iaC 214 (313)
+++|+|+..+.-..+..+++.+++.++++|....+.. +.-++++ +..+. ..+|..|+.+.
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLD-SQNNPAKELANVQDLTVRGTKILLINPT 66 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHTTTTEEEEEECCS
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeC-CCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 6899999998888888999999999999997765543 3445443 23332 24999887543
No 134
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=41.95 E-value=68 Score=28.91 Aligned_cols=43 Identities=12% Similarity=0.099 Sum_probs=28.1
Q ss_pred CCEEEEEEeCCCCCCc-HHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 042576 153 ARTWGIVLGTLGRQGN-PRILERLQKRMEKKGFDYVVIMMSEIS 195 (313)
Q Consensus 153 A~~~GIIvgTLg~Q~~-~~ii~~l~~ll~~~Gkk~y~i~v~ein 195 (313)
-+++.+|++..++++. .+++++++..|+++|.++.++......
T Consensus 8 m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~~ 51 (304)
T 3s40_A 8 FEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQG 51 (304)
T ss_dssp CSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCSTT
T ss_pred CCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCcc
Confidence 3567777777777765 456677777777777766555544444
No 135
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=41.73 E-value=39 Score=28.78 Aligned_cols=76 Identities=11% Similarity=0.031 Sum_probs=43.1
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCH----HHHhcCc-CCccEEEEecCCCc--cccccCCCCC
Q 042576 155 TWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISP----ARVALFE-DSVDAWIQIACPRL--SIDWGDAFTK 227 (313)
Q Consensus 155 ~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp----~KLanf~-~~ID~fV~iaCPrl--sid~~~~f~k 227 (313)
+||+|+..+....+..+++.+++.++++|.+..++.. +-++ +.+..+. ..+|++|+.+.... .+..-..-..
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~i 79 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLEQRYDLALFPI-LSLARLKRYLENTTLAYLTDGLILASYDLTERFEEGRLPTER 79 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGGGTCEEEECCC-CSCCCCC---------CCCSEEEEESCCCC------CCSCSS
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC-CCchhhHHHHHHHHHhCCCCEEEEecCCCCHHHHHHHhhcCC
Confidence 4899998887777778999999999999976554322 2222 1233331 24899888765422 2223333345
Q ss_pred cccC
Q 042576 228 PLLT 231 (313)
Q Consensus 228 PvLT 231 (313)
|++.
T Consensus 80 PvV~ 83 (276)
T 2h0a_A 80 PVVL 83 (276)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 6653
No 136
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=41.73 E-value=35 Score=30.25 Aligned_cols=62 Identities=21% Similarity=0.035 Sum_probs=35.7
Q ss_pred CCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH----HhcC-cCCccEEEEecC
Q 042576 153 ARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR----VALF-EDSVDAWIQIAC 214 (313)
Q Consensus 153 A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K----Lanf-~~~ID~fV~iaC 214 (313)
+++||+|+.+++-.....+++.+++.+++.|.+..+..-++-++++ +.++ ...+|+.|+.+.
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~ 69 (316)
T 1tjy_A 3 AERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAV 69 (316)
T ss_dssp CCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4677777777666666667777777777777554322123445443 2222 114777776554
No 137
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=41.63 E-value=41 Score=28.26 Aligned_cols=61 Identities=21% Similarity=0.237 Sum_probs=44.3
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC---cEEEEEeCCCC-----HHHHhcCcCCccEEEEecCC
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGF---DYVVIMMSEIS-----PARVALFEDSVDAWIQIACP 215 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gk---k~y~i~v~ein-----p~KLanf~~~ID~fV~iaCP 215 (313)
.+||||+++.-..=.-.+++--.+.|+++|. +..++.|--.+ ..||+.-. .+|++|-++|.
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~-~yDavIalG~V 81 (154)
T 1hqk_A 13 LRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKE-DIDAVIAIGVL 81 (154)
T ss_dssp CCEEEEEECTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCT-TCCEEEEEEEE
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcC-CCCEEEEeeee
Confidence 4699999986555445667777788889995 34566555333 36777776 79999999998
No 138
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=41.44 E-value=23 Score=29.03 Aligned_cols=56 Identities=11% Similarity=0.141 Sum_probs=39.7
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEecCC
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACP 215 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~iaCP 215 (313)
+++.|+.+|..+ +...+++.|.+.|.+.|.++.++-+.+..+..| . +.|.+| ++||
T Consensus 10 ~ki~I~Y~S~tG-nT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~l---~-~~d~ii-~g~p 65 (167)
T 1ykg_A 10 PGITIISASQTG-NARRVAEALRDDLLAAKLNVKLVNAGDYKFKQI---A-SEKLLI-VVTS 65 (167)
T ss_dssp --CEEEEECSSS-HHHHHHHHHHHHHHHHTCCCEEEEGGGCCGGGG---G-GCSEEE-EEEE
T ss_pred CeEEEEEECCch-HHHHHHHHHHHHHHHCCCceEEeehhhCCHHHh---c-cCCeEE-EEEc
Confidence 357899999763 356799999999999998888888887776544 3 356544 4455
No 139
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=41.42 E-value=77 Score=24.56 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=40.0
Q ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEE--EEeCCCCHHHHhcCcCCccEEEEecCCCccccccCCC-CCcccC
Q 042576 157 GIVLGTLGRQGNPRILERLQKRMEKKGFDYVV--IMMSEISPARVALFEDSVDAWIQIACPRLSIDWGDAF-TKPLLT 231 (313)
Q Consensus 157 GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~--i~v~einp~KLanf~~~ID~fV~iaCPrlsid~~~~f-~kPvLT 231 (313)
-++++.-|..-+.=+..+|++.+++.|....+ ..++++.. .+. ++|+++.+ |.+. ..| ..|++.
T Consensus 24 IlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~----~~~-~~DlIist--~~l~----~~~~~ipvi~ 90 (113)
T 1tvm_A 24 IIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIET----YMD-GVHLICTT--ARVD----RSFGDIPLVH 90 (113)
T ss_dssp EEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTT----STT-SCSEEEES--SCCC----CCSTTCCEEC
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhh----ccC-CCCEEEEC--Cccc----cccCCCCEEE
Confidence 36666666655566799999999999987433 33444422 234 68865544 3433 346 678766
No 140
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=41.14 E-value=77 Score=27.26 Aligned_cols=144 Identities=14% Similarity=0.092 Sum_probs=67.2
Q ss_pred eEEEEec----cccHhHHHHHHHHHHhCCCeEEe-cCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCcccHHH-H-Hh
Q 042576 39 KLILAGT----IQFASAIRAAKPELEKQGFKVMI-PQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEA-F-MI 111 (313)
Q Consensus 39 ~i~Lv~t----iQf~~~l~~~~~~L~~~g~~v~i-pq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~-~-mi 111 (313)
+|+++.. --|...++.+.+.+++.|+++++ .... ..+.+..-+-...+. ..+|++|+.+...-.... + .+
T Consensus 6 ~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~l~~--~~vdgiii~~~~~~~~~~~~~~~ 82 (303)
T 3d02_A 6 TVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVGPSS-TDAPQQVKIIEDLIA--RKVDAITIVPNDANVLEPVFKKA 82 (303)
T ss_dssp EEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEECCSS-SCHHHHHHHHHHHHH--TTCSEEEECCSCHHHHHHHHHHH
T ss_pred EEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEECCCC-CCHHHHHHHHHHHHH--cCCCEEEEecCChHHHHHHHHHH
Confidence 5666632 22445567788888888988753 1110 000000000000001 237888776542211111 1 23
Q ss_pred hCCCceEEEeCCC-C--CcccccccChHHHHHHHHHHHHHHhhcCC-EEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcE
Q 042576 112 SNPGIKTFRYDPY-L--GKLFLEEYDNKGMRETRKRAIEKAMKEAR-TWGIVLGTLGRQGNPRILERLQKRMEKKGFDY 186 (313)
Q Consensus 112 ~np~~~~y~yDPy-s--~~~~~e~~d~~~~l~~R~~~I~kak~~A~-~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~ 186 (313)
....+|++.+|-. . ..+.....|....-+.=-..+.+.. ..+ ++++|.|..+......-.+-.++-++++|...
T Consensus 83 ~~~~ipvV~~~~~~~~~~~~~~v~~d~~~~g~~a~~~l~~~~-g~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~~~~ 160 (303)
T 3d02_A 83 RDAGIVVLTNESPGQPSANWDVEIIDNEKFAAEYVEHMAKRM-GGKGGYVIYVGSLTVPQHNLWADLLVKYQKEHYPDM 160 (303)
T ss_dssp HHTTCEEEEESCTTCTTCSEEEESSCHHHHHHHHHHHHHHHT-TTCEEEEEECSCSSCHHHHHHHHHHHHHHHHHCTTE
T ss_pred HHCCCeEEEEecCCCCCCceEEEecCHHHHHHHHHHHHHHHh-CcCceEEEEecCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 3457899888854 2 1222223443332211111111212 345 89999887554333344555666777766443
No 141
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=40.59 E-value=45 Score=27.34 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=37.1
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEecCCC
Q 042576 155 TWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPR 216 (313)
Q Consensus 155 ~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~iaCPr 216 (313)
++.||.+|..+. ...+++.|.+.|... .+-++-+.+..++.|..+ |. |+++||-
T Consensus 2 ki~IvY~S~tGn-T~~iA~~Ia~~l~~~--~v~i~~~~~~~~~~l~~~----d~-ii~g~pt 55 (175)
T 1ag9_A 2 ITGIFFGSDTGN-TENIAKMIQKQLGKD--VADVHDIAKSSKEDLEAY----DI-LLLGIPT 55 (175)
T ss_dssp CEEEEECCSSSH-HHHHHHHHHHHHCTT--TEEEEEGGGCCHHHHHTC----SE-EEEECCE
T ss_pred EEEEEEECCCch-HHHHHHHHHHHhccC--ceEEEEcccCChhHhhhC----CE-EEEEEee
Confidence 478999998643 557888888888653 466677777777766554 44 5566773
No 142
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=40.40 E-value=62 Score=27.89 Aligned_cols=62 Identities=8% Similarity=0.006 Sum_probs=41.2
Q ss_pred cCCEEEEEEeC-C---CCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCH----HHHhcC-cCCccEEEEecC
Q 042576 152 EARTWGIVLGT-L---GRQGNPRILERLQKRMEKKGFDYVVIMMSEISP----ARVALF-EDSVDAWIQIAC 214 (313)
Q Consensus 152 ~A~~~GIIvgT-L---g~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp----~KLanf-~~~ID~fV~iaC 214 (313)
..++||+|+.. + .-..+..+++-+++.++++|.+..++.. .-++ +-+..+ ...+|++|+.+.
T Consensus 3 ~s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiIi~~~ 73 (287)
T 3bbl_A 3 LSFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPF-SEDRSQIDIYRDLIRSGNVDGFVLSSI 73 (287)
T ss_dssp CCCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCC-CSSTTCCHHHHHHHHTTCCSEEEECSC
T ss_pred ceeEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeC-CCchHHHHHHHHHHHcCCCCEEEEeec
Confidence 46789999988 7 6677788999999999999976544322 2222 223333 124899888765
No 143
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=40.40 E-value=56 Score=29.01 Aligned_cols=62 Identities=15% Similarity=0.230 Sum_probs=43.8
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH----HhcC-cCCccEEEEecC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR----VALF-EDSVDAWIQIAC 214 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K----Lanf-~~~ID~fV~iaC 214 (313)
..++||+|+..+....+..+++.+++.++++|....+.. ..-++++ +..+ ...+|.+|+.+.
T Consensus 62 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 128 (332)
T 2o20_A 62 RTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILAN-SDNDVEKEEKVLETFLSKQVDGIVYMGS 128 (332)
T ss_dssp CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEE-CTTCHHHHHHHHHHHHHTTCSEEEECSS
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEE-CCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 567899999887777777899999999999998765543 3445543 2222 125899888764
No 144
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=40.16 E-value=44 Score=30.13 Aligned_cols=62 Identities=15% Similarity=0.257 Sum_probs=42.4
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH----HhcC-cCCccEEEEecC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR----VALF-EDSVDAWIQIAC 214 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K----Lanf-~~~ID~fV~iaC 214 (313)
..++||+|+..+.-..+..+++.+++.++++|....++.. .-++++ +..+ ...+|.+|+.+.
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiI~~~~ 131 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNS-NEDATTMSGSLEFLTSHGVDGIICVPN 131 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEEC-TTCHHHHHHHHHHHHHTTCSCEEECCC
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC-CCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 4568999998887777778999999999999988766543 345543 2222 124899888764
No 145
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=39.97 E-value=1.6e+02 Score=24.47 Aligned_cols=148 Identities=13% Similarity=0.050 Sum_probs=75.1
Q ss_pred eEEEEec-c---ccHhHHHHHHHHHHhCCCeEEecCCCCCCCc--cccCCCCCCCCCCCCCCeEEEecCCcccHHHHHhh
Q 042576 39 KLILAGT-I---QFASAIRAAKPELEKQGFKVMIPQSKPLSAG--EVLGCTAPKIPARESDFNLVFIADGRFHLEAFMIS 112 (313)
Q Consensus 39 ~i~Lv~t-i---Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~G--evLGCt~~~~~~~~~~d~iv~igdGrFHle~~mi~ 112 (313)
.|+++.. + -|...++.+.+.+++.|+++++-....-... +.+-- ... ..+|++|+.+......+. +.
T Consensus 4 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~---l~~--~~vdgiI~~~~~~~~~~~--l~ 76 (255)
T 1byk_A 4 VVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMESQFSPQLVAEHLGV---LKR--RNIDGVVLFGFTGITEEM--LA 76 (255)
T ss_dssp EEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHH---HHT--TTCCEEEEECCTTCCTTT--SG
T ss_pred EEEEEeCCCCCccHHHHHHHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHH---HHh--cCCCEEEEecCccccHHH--HH
Confidence 4665532 2 2445567788888888998765221100000 00000 001 137888877632222211 22
Q ss_pred CCCceEEEeCCCCCcccccccChHHHHHH-HHHHHHHHhhcCCEEEEEEeCC-CCCCcHHHHHHHHHHHHHcCCcEEEEE
Q 042576 113 NPGIKTFRYDPYLGKLFLEEYDNKGMRET-RKRAIEKAMKEARTWGIVLGTL-GRQGNPRILERLQKRMEKKGFDYVVIM 190 (313)
Q Consensus 113 np~~~~y~yDPys~~~~~e~~d~~~~l~~-R~~~I~kak~~A~~~GIIvgTL-g~Q~~~~ii~~l~~ll~~~Gkk~y~i~ 190 (313)
.-..|++.+|-....+.....|..+.-+. =.++++ + ..+++|+|-|.. +......-.+-.++-++++|.+.. +.
T Consensus 77 ~~~~pvV~~~~~~~~~~~V~~d~~~~~~~a~~~L~~--~-G~~~I~~i~~~~~~~~~~~~R~~gf~~al~~~g~~~~-~~ 152 (255)
T 1byk_A 77 HWQSSLVLLARDAKGFASVCYDDEGAIKILMQRLYD--Q-GHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPV-AA 152 (255)
T ss_dssp GGSSSEEEESSCCSSCEEEEECHHHHHHHHHHHHHH--T-TCCCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCCE-EE
T ss_pred hcCCCEEEEccccCCCCEEEEccHHHHHHHHHHHHH--c-CCCeEEEEecCCCCcccHHHHHHHHHHHHHHcCCCcc-ee
Confidence 22567888875433333333443322111 011222 4 668999998863 444555566667788888997643 33
Q ss_pred eCCCCHH
Q 042576 191 MSEISPA 197 (313)
Q Consensus 191 v~einp~ 197 (313)
.+..+.+
T Consensus 153 ~~~~~~~ 159 (255)
T 1byk_A 153 LPGLAMK 159 (255)
T ss_dssp CCCSCHH
T ss_pred ecCCccc
Confidence 4555554
No 146
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=39.81 E-value=1.7e+02 Score=24.79 Aligned_cols=168 Identities=15% Similarity=0.070 Sum_probs=79.8
Q ss_pred CeEEEEec-c---ccHhHHHHHHHHHHhCCCeEEecCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCccc-HHHHHhh
Q 042576 38 GKLILAGT-I---QFASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFH-LEAFMIS 112 (313)
Q Consensus 38 ~~i~Lv~t-i---Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFH-le~~mi~ 112 (313)
.+|+++.. + -|...++.+.+.+++.|+++++-.... .+.+..-.-..... ..+|++|+.+...-. .....-.
T Consensus 8 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~--~~vdgii~~~~~~~~~~~~~l~~ 84 (289)
T 1dbq_A 8 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWN-NLEKQRAYLSMMAQ--KRVDGLLVMCSEYPEPLLAMLEE 84 (289)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEECTT-CHHHHHHHHHHHHH--TTCSEEEEECSCCCHHHHHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEcCCC-ChHHHHHHHHHHHh--CCCCEEEEEeccCCHHHHHHHHh
Confidence 35776642 2 245566778888888899876521110 00000000000001 237888877543211 2222222
Q ss_pred CCCceEEEeCCCCC--c-ccccccChHHHHHH-HHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEE
Q 042576 113 NPGIKTFRYDPYLG--K-LFLEEYDNKGMRET-RKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVV 188 (313)
Q Consensus 113 np~~~~y~yDPys~--~-~~~e~~d~~~~l~~-R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~ 188 (313)
..++|++.+|.... . ......|..+.-+. =.++++ + ..+++|+|.|..+......-.+-.++-++++|.+...
T Consensus 85 ~~~iPvV~~~~~~~~~~~~~~V~~d~~~~~~~~~~~L~~--~-G~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~ 161 (289)
T 1dbq_A 85 YRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIE--R-GHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPE 161 (289)
T ss_dssp TTTSCEEEEECSSCCSSSCEEEEECHHHHHHHHHHHHHH--T-TCCSEEEECCC------CHHHHHHHHHHHHTTCCCCG
T ss_pred ccCCCEEEEccCCCccCcCCEEEeCcHHHHHHHHHHHHH--C-CCCeEEEEecCCccccHHHHHHHHHHHHHHCCCCCCh
Confidence 25788888875322 1 22223443332111 011222 3 5689999988765444445566677888888865421
Q ss_pred --EEeCCCCHH-------H-HhcCcCCccEEEEe
Q 042576 189 --IMMSEISPA-------R-VALFEDSVDAWIQI 212 (313)
Q Consensus 189 --i~v~einp~-------K-Lanf~~~ID~fV~i 212 (313)
+..+..+.+ + |+..+ ++|+++..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~~ 194 (289)
T 1dbq_A 162 SWIVQGDFEPESGYRAMQQILSQPH-RPTAVFCG 194 (289)
T ss_dssp GGBCCCCSSHHHHHHHHHHHHTSSS-CCSEEEES
T ss_pred HHeEeCCCCHHHHHHHHHHHHhCCC-CCCEEEEC
Confidence 223343432 1 23334 68887643
No 147
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=39.55 E-value=1.2e+02 Score=23.01 Aligned_cols=73 Identities=12% Similarity=0.249 Sum_probs=47.4
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEecCCCcccc--cc----CCCCCcc--
Q 042576 158 IVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLSID--WG----DAFTKPL-- 229 (313)
Q Consensus 158 IIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~iaCPrlsid--~~----~~f~kPv-- 229 (313)
++++.-|..-+ -++++|++.+++.|.+.-+-..+--..... .. ++|+++.+ |.+... .- ..+.+|+
T Consensus 8 lvvC~~G~~TS-ll~~kl~~~~~~~gi~~~i~~~~~~~~~~~--~~-~~D~Ii~t--~~l~~~~~~~~~~~~~~~~pv~~ 81 (109)
T 2l2q_A 8 LLVCGAGMSTS-MLVQRIEKYAKSKNINATIEAIAETRLSEV--VD-RFDVVLLA--PQSRFNKKRLEEITKPKGIPIEI 81 (109)
T ss_dssp EEESSSSCSSC-HHHHHHHHHHHHHTCSEEEEEECSTTHHHH--TT-TCSEEEEC--SCCSSHHHHHHHHHHHHTCCEEE
T ss_pred EEECCChHhHH-HHHHHHHHHHHHCCCCeEEEEecHHHHHhh--cC-CCCEEEEC--CccHHHHHHHHHHhcccCCCEEE
Confidence 77778787777 888999999999998765544444443332 45 68865443 554421 11 1246788
Q ss_pred cCHHHHH
Q 042576 230 LTPFEAE 236 (313)
Q Consensus 230 LTPyE~~ 236 (313)
++|..+.
T Consensus 82 I~~~~y~ 88 (109)
T 2l2q_A 82 INTIDYG 88 (109)
T ss_dssp CCHHHHH
T ss_pred EChHHhc
Confidence 9997764
No 148
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=39.29 E-value=1.9e+02 Score=25.45 Aligned_cols=167 Identities=15% Similarity=0.074 Sum_probs=81.8
Q ss_pred CeEEEEe-cc---ccHhHHHHHHHHHHhCCCeEEecCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCccc-HHHHHhh
Q 042576 38 GKLILAG-TI---QFASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFH-LEAFMIS 112 (313)
Q Consensus 38 ~~i~Lv~-ti---Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFH-le~~mi~ 112 (313)
.+|+++. ++ -|...++.+.+.+++.|+++++..... .+.+....-..... ..+|++|+.+...-. .......
T Consensus 59 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~l~~--~~vdgiI~~~~~~~~~~~~~l~~ 135 (340)
T 1qpz_A 59 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWN-NLEKQRAYLSMMAQ--KRVDGLLVMCSEYPEPLLAMLEE 135 (340)
T ss_dssp SEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHH--TTCSEEEECCSCCCHHHHHHHHT
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEeCCC-CHHHHHHHHHHHHc--CCCCEEEEeCCCCChHHHHHHHh
Confidence 4688764 22 355567788889999999977522110 00000000000001 237998887643211 1222212
Q ss_pred CCCceEEEeCCCCC--c-ccccccChHHHHHH-HHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEE
Q 042576 113 NPGIKTFRYDPYLG--K-LFLEEYDNKGMRET-RKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVV 188 (313)
Q Consensus 113 np~~~~y~yDPys~--~-~~~e~~d~~~~l~~-R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~ 188 (313)
..++|++.+|-... . ......|....-+. =.++++ + ..+++|+|-|..+......-.+-.++-++++|.+.-.
T Consensus 136 ~~~iPvV~~~~~~~~~~~~~~V~~D~~~~~~~a~~~L~~--~-G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~g~~~~~ 212 (340)
T 1qpz_A 136 YRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIE--R-GHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPE 212 (340)
T ss_dssp TTTSCEEEEEESSCCCSSSEEEECCHHHHHHHHHHHHHH--H-TCCCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCG
T ss_pred hCCCCEEEEecccCCCCCCCEEEECHHHHHHHHHHHHHH--C-CCCEEEEEeCCCccccHHHHHHHHHHHHHHCCCCCCh
Confidence 24678887774321 1 21233443322111 112222 3 6689999988754333334445566778888865321
Q ss_pred --EEeCCCCHHH--------HhcCcCCccEEEE
Q 042576 189 --IMMSEISPAR--------VALFEDSVDAWIQ 211 (313)
Q Consensus 189 --i~v~einp~K--------Lanf~~~ID~fV~ 211 (313)
+..+..+.+. |..-+ ++|+++.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~ll~~~~-~~~ai~~ 244 (340)
T 1qpz_A 213 SWIVQGDFEPESGYRAMQQILSQPH-RPTAVFC 244 (340)
T ss_dssp GGBCCCCSSHHHHHHHHHHHHTSSS-CCSEEEE
T ss_pred hheEeCCCCHHHHHHHHHHHHcCCC-CCcEEEE
Confidence 2234445432 23334 5888764
No 149
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=39.26 E-value=46 Score=29.18 Aligned_cols=60 Identities=10% Similarity=0.057 Sum_probs=36.6
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHh----cC-cCCccEEEEecC
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVA----LF-EDSVDAWIQIAC 214 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLa----nf-~~~ID~fV~iaC 214 (313)
.+||+|+..++. ....+++-+++.+++.|.+..++..++-++++.. .+ ...+|+.|+.+.
T Consensus 2 ~~Ig~i~~~~~~-~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (313)
T 2h3h_A 2 LTIGVIGKSVHP-YWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPS 66 (313)
T ss_dssp CEEEEECSCSSH-HHHHHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEEeCCCcH-HHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 367888777766 6667777788888888866544433445554421 22 114777776654
No 150
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=38.90 E-value=68 Score=24.68 Aligned_cols=72 Identities=7% Similarity=0.075 Sum_probs=45.8
Q ss_pred EEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeC--CCCHHHHhcCcCCccEEEEecCCCcccc--c----cCCCCCcc
Q 042576 158 IVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMS--EISPARVALFEDSVDAWIQIACPRLSID--W----GDAFTKPL 229 (313)
Q Consensus 158 IIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~--einp~KLanf~~~ID~fV~iaCPrlsid--~----~~~f~kPv 229 (313)
++++.-|. ++--+++++++.++++|.++-+...+ ++.. . .. +.|+++.. |..... + ...+.-|+
T Consensus 7 ll~Cg~G~-sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~~~-~---~~-~~Dvil~~--pqv~~~~~~~~~~~~~~~v~v 78 (106)
T 1e2b_A 7 YLFSSAGM-STSLLVSKMRAQAEKYEVPVIIEAFPETLAGE-K---GQ-NADVVLLG--PQIAYMLPEIQRLLPNKPVEV 78 (106)
T ss_dssp EEECSSST-TTHHHHHHHHHHHHHSCCSEEEEEECSSSTTH-H---HH-HCSEEEEC--TTSGGGHHHHHHHSSSSCCCB
T ss_pred EEECCCch-hHHHHHHHHHHHHHHCCCCeEEEEecHHHHHh-h---cc-CCCEEEEc--cchhhhHHHHHHHhcCCCceE
Confidence 45555555 44479999999999999987655444 4443 2 23 57866644 665531 1 12367889
Q ss_pred cCHHHHHH
Q 042576 230 LTPFEAEI 237 (313)
Q Consensus 230 LTPyE~~v 237 (313)
++|..+-.
T Consensus 79 I~~~~yg~ 86 (106)
T 1e2b_A 79 IDSLLYGK 86 (106)
T ss_dssp CCHHHHTT
T ss_pred ECHHHccC
Confidence 99877743
No 151
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=38.80 E-value=26 Score=33.39 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=28.8
Q ss_pred ccCChHHHHHHHHHhC------CCCCeEEEEeccc-----cHhHHHHHHHHHHhCCCeEEecCC
Q 042576 19 IKIDVNRLIDTIKVNY------SDPGKLILAGTIQ-----FASAIRAAKPELEKQGFKVMIPQS 71 (313)
Q Consensus 19 i~iD~~~~i~~i~~~f------~~~~~i~Lv~tiQ-----f~~~l~~~~~~L~~~g~~v~ipq~ 71 (313)
|.=|-.|+++.+.... .++.+|+|++... ..+.++...+.|++.|++|++...
T Consensus 19 ~~~~~~~~~~~~~~~~i~P~~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~ 82 (371)
T 3tla_A 19 IDDDDKHMLEMIQSHPLLAAPLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKL 82 (371)
T ss_dssp ---------------CBCCCCCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTT
T ss_pred cCcchHHHHHHHHhccCCCCCCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCc
Confidence 3344568888887642 3467899998653 346788889999999999987543
No 152
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=38.72 E-value=2e+02 Score=25.19 Aligned_cols=136 Identities=10% Similarity=0.051 Sum_probs=72.2
Q ss_pred CeEEEEec-c---ccHhHHHHHHHHHHhCCCeEEecCCCCCCCc--cccCCCCCCCCCCCCCCeEEEecCCcccHHHHHh
Q 042576 38 GKLILAGT-I---QFASAIRAAKPELEKQGFKVMIPQSKPLSAG--EVLGCTAPKIPARESDFNLVFIADGRFHLEAFMI 111 (313)
Q Consensus 38 ~~i~Lv~t-i---Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~G--evLGCt~~~~~~~~~~d~iv~igdGrFHle~~mi 111 (313)
.+|+++.. + -|...++.+.+.+++.|+++++-....-... +.+- .... ..+|++| .+... ..+. +
T Consensus 61 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~l~~--~~vdgiI-~~~~~-~~~~--l 131 (330)
T 3ctp_A 61 KTIGLMVPNISNPFFNQMASVIEEYAKNKGYTLFLCNTDDDKEKEKTYLE---VLQS--HRVAGII-ASRSQ-CEDE--Y 131 (330)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHH---HHHH--TTCSEEE-EETCC-CSGG--G
T ss_pred CEEEEEeCCCCCcHHHHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHH---HHHh--CCCCEEE-ECCCC-CHHH--H
Confidence 35887642 2 2556677888899999999765221100000 0000 0001 2378988 75432 2122 3
Q ss_pred hCCCceEEEeCCCCC-cccccccChHHHH--HHHHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcE
Q 042576 112 SNPGIKTFRYDPYLG-KLFLEEYDNKGMR--ETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDY 186 (313)
Q Consensus 112 ~np~~~~y~yDPys~-~~~~e~~d~~~~l--~~R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~ 186 (313)
....+|++.+|.... .+.....|....- ..+ ++++ + ..+++|+|.|..+......-.+-.++-++++|.+.
T Consensus 132 ~~~~iPvV~~~~~~~~~~~~V~~D~~~~~~~a~~-~L~~--~-G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~ 205 (330)
T 3ctp_A 132 ANIDIPVVAFENHILDNIITISSDNYNGGRMAFD-HLYE--K-GCRKILHIKGPEVFEATELRYKGFLDGARAKDLEI 205 (330)
T ss_dssp TTCCSCEEEESSCCCTTSCEEEECHHHHHHHHHH-HHHH--T-TCCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HhcCCCEEEEeccCCCCCCEEEeCHHHHHHHHHH-HHHH--C-CCCeEEEEeCCccCccHHHHHHHHHHHHHHcCCCc
Confidence 446789988885432 2222333433221 111 1222 3 66899999987654333344555677788889765
No 153
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=38.40 E-value=42 Score=29.74 Aligned_cols=63 Identities=13% Similarity=0.018 Sum_probs=43.8
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHH----hcC-cCC--ccEEEEecCC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARV----ALF-EDS--VDAWIQIACP 215 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KL----anf-~~~--ID~fV~iaCP 215 (313)
..++||+|+..++...+..+++-+++.++++|.+..++. ..-++++. ..+ ... +|++|+.++.
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~-~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~ 73 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLT-TEGSSEKGIADIRALLQKTGGNLVLNVDPND 73 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEE-CTTCHHHHHHHHHHHHHHTTTCEEEEECCSS
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEec-CCCCHHHHHHHHHHHHHCCCCCCEEEEeCCC
Confidence 567899999888777778888999999999998865543 34455432 222 125 8888876553
No 154
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1
Probab=38.12 E-value=83 Score=30.08 Aligned_cols=59 Identities=15% Similarity=0.277 Sum_probs=47.4
Q ss_pred CCEEEEEEeCCCC--CCcHHHHHHHHHHHHHcCC-cEEEEEeCCCCHHHHhcCcCCccEEEE
Q 042576 153 ARTWGIVLGTLGR--QGNPRILERLQKRMEKKGF-DYVVIMMSEISPARVALFEDSVDAWIQ 211 (313)
Q Consensus 153 A~~~GIIvgTLg~--Q~~~~ii~~l~~ll~~~Gk-k~y~i~v~einp~KLanf~~~ID~fV~ 211 (313)
++..||-+=+.+. ..-..+++++++.|.+.|. +..+++.|.||+++++.+...||+|-+
T Consensus 233 ~~~d~IrlDs~~~~~gd~~~~v~~~r~~ld~~G~~~~~I~aSggl~~~~i~~l~~~vD~~gv 294 (395)
T 2i14_A 233 KKLFAVRLDTPSSRRGNFRKIIEEVRWELKVRGYDWVKIFVSGGLDEEKIKEIVDVVDAFGV 294 (395)
T ss_dssp GGCCEEEECCCTTTCSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHTTGGGCSEEEE
T ss_pred cCCcEEEeCCCCCCcccHHHHHHHHHHHHHhCCCCceEEEEECCCCHHHHHHHHHhCCEEEe
Confidence 5677888888765 5566789999999999884 467888999999999999745888763
No 155
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=38.08 E-value=37 Score=29.39 Aligned_cols=61 Identities=7% Similarity=0.047 Sum_probs=37.4
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC-cEEEEEeCCCCHHH----HhcC-cCCccEEEEecCC
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGF-DYVVIMMSEISPAR----VALF-EDSVDAWIQIACP 215 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gk-k~y~i~v~einp~K----Lanf-~~~ID~fV~iaCP 215 (313)
++||+|+..++-.....+++-+++.++++|. +..++ -+.-++++ +..+ ...+|++|+.+..
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~vdgiii~~~~ 69 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMN-DSQNDQSKQNDQIDVLLAKGVKALAINLVD 69 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEE-ECTTCHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEe-cCCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 5788888777666667788888888888886 44333 23334433 2222 1147887776543
No 156
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=37.96 E-value=43 Score=28.11 Aligned_cols=61 Identities=20% Similarity=0.251 Sum_probs=43.9
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCc---EEEEEeCCCC-----HHHHhcCcCCccEEEEecCC
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGFD---YVVIMMSEIS-----PARVALFEDSVDAWIQIACP 215 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk---~y~i~v~ein-----p~KLanf~~~ID~fV~iaCP 215 (313)
.+||||++..-..=.-.+++--.+.|+++|.+ ..++.|--.+ ..+|+.-. .+|++|-++|.
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~-~yDavIaLG~V 81 (154)
T 1rvv_A 13 LKIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETK-KYDAIITLGTV 81 (154)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHHTS-CCSEEEEEEEE
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcC-CCCEEEEeeee
Confidence 46999999865554456677777888899853 4566555333 26777766 69999999998
No 157
>1wzu_A Quinolinate synthetase A; NAD, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: c.145.1.1 PDB: 2qs0_A
Probab=37.79 E-value=2.3e+02 Score=26.25 Aligned_cols=116 Identities=14% Similarity=0.129 Sum_probs=60.9
Q ss_pred CCeEEEecCCcccHHHHHhhCCCceEEEeCCCCCcccccccChHHHHHHHHH----------------------------
Q 042576 93 DFNLVFIADGRFHLEAFMISNPGIKTFRYDPYLGKLFLEEYDNKGMRETRKR---------------------------- 144 (313)
Q Consensus 93 ~d~iv~igdGrFHle~~mi~np~~~~y~yDPys~~~~~e~~d~~~~l~~R~~---------------------------- 144 (313)
.+.|||.|+ +|-.|.+.+-+|.+.++-=|+..+=-..+..+.+.+.+.|..
T Consensus 50 a~~IvF~gv-~FMaetakil~p~k~Vl~pd~~a~C~~a~~~~~e~v~~~k~~~Pda~vV~y~n~saeVka~aD~v~TSsn 128 (300)
T 1wzu_A 50 ADVIVFAGV-DFMAETAKILNPDKVVLIPSREATCAMANMLKVEHILEAKRKYPNAPVVLYVNSTAEAKAYADVTVTSAN 128 (300)
T ss_dssp SSEEEEESC-HHHHHHHHHHCTTSEEECCC------------CHHHHHHHHHSTTSCEEEESSSCHHHHTTCSEEECTTT
T ss_pred CCEEEEeCc-chHHHHHHHhCCCCEEECCCCCCCcccccCCCHHHHHHHHHHCCCCeEEEecCChHHHHHhCCEEEchHH
Confidence 578999988 688888988888887776554433222333334444443322
Q ss_pred HHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEE-------EeCCCCHHHHhcC----cCCccEEEEec
Q 042576 145 AIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVI-------MMSEISPARVALF----EDSVDAWIQIA 213 (313)
Q Consensus 145 ~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i-------~v~einp~KLanf----~~~ID~fV~ia 213 (313)
++.-++ ..+.=-||++| ...+..++++.. ||+++.. ++..+++++|... | +..+.|===
T Consensus 129 a~~~v~-~~~~~~iif~p-----D~~Lg~~l~~~~---~k~~i~~~~~g~C~vh~~~t~e~i~~~~~~~P-~a~v~~HPE 198 (300)
T 1wzu_A 129 AVEVVK-KLDSDVVIFGP-----DKNLAHYVAKMT---GKKIIPVPSKGHCYVHQKFTLDDVERAKKLHP-NAKLMIHPE 198 (300)
T ss_dssp HHHHHH-TCSCSEEEEES-----CHHHHHHHHHHH---CCEEEEC-----------CCHHHHHHHHHHCT-TCEEEECTT
T ss_pred HHHHHH-hCCCCeEEEEC-----ChhHHHHHHHHc---CCeEEECCCCCcCCCcccCCHHHHHHHHHHCC-CCEEEECCC
Confidence 222222 11111256665 355666666553 8887643 3458899888754 5 466666666
Q ss_pred CCCccc
Q 042576 214 CPRLSI 219 (313)
Q Consensus 214 CPrlsi 219 (313)
||.--+
T Consensus 199 c~~~v~ 204 (300)
T 1wzu_A 199 CIPEVQ 204 (300)
T ss_dssp SCHHHH
T ss_pred CCHHHH
Confidence 776433
No 158
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=37.62 E-value=95 Score=27.53 Aligned_cols=100 Identities=14% Similarity=0.225 Sum_probs=64.6
Q ss_pred HHHHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCC--HHHHhcCcCCccEEEEecCCCc
Q 042576 140 ETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEIS--PARVALFEDSVDAWIQIACPRL 217 (313)
Q Consensus 140 ~~R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~ein--p~KLanf~~~ID~fV~iaCPrl 217 (313)
.+...++.+..-+++++|||.++ +-.++...++.+++.+++.|.+.....+...+ .+.+....+++|++........
T Consensus 127 ~~~l~l~~~l~P~~k~vgvi~~~-~~~~s~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~~~~d~i~~~~d~~~ 205 (302)
T 3lkv_A 127 EQHVELIKEILPNVKSIGVVYNP-GEANAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDNTV 205 (302)
T ss_dssp HHHHHHHHHHSTTCCEEEEEECT-TCHHHHHHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHHTTCSEEEECSCHHH
T ss_pred HHHHHHHHHhCCCCCEEEEEeCC-CcccHHHHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHhccCCeeEEEEeCCcch
Confidence 44556666665478999999865 44666778899999999999988777666544 2233344337998876544331
Q ss_pred --cc----cccCCCCCcccCHHHHHHHhC
Q 042576 218 --SI----DWGDAFTKPLLTPFEAEIALG 240 (313)
Q Consensus 218 --si----d~~~~f~kPvLTPyE~~vAL~ 240 (313)
++ .-......|+++..+..+--|
T Consensus 206 ~~~~~~i~~~~~~~~iPv~~~~~~~v~~G 234 (302)
T 3lkv_A 206 ASAIEGMIVAANQAKTPVFGAATSYVERG 234 (302)
T ss_dssp HHTHHHHHHHHHHTTCCEEESSHHHHHTT
T ss_pred hhHHHHHHHHHhhcCCceeecccccccCC
Confidence 01 112345678887777766543
No 159
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=37.54 E-value=1.7e+02 Score=25.66 Aligned_cols=161 Identities=9% Similarity=0.063 Sum_probs=0.0
Q ss_pred cHhHHHHHHHHHHhCCCeEEec--CCCC-CCCccccCCCCCCCCCCCCCCeEEEecCCcccHHHHH-hhCCCceEEEe-C
Q 042576 48 FASAIRAAKPELEKQGFKVMIP--QSKP-LSAGEVLGCTAPKIPARESDFNLVFIADGRFHLEAFM-ISNPGIKTFRY-D 122 (313)
Q Consensus 48 f~~~l~~~~~~L~~~g~~v~ip--q~~p-ls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle~~m-i~np~~~~y~y-D 122 (313)
|...++.+.+.+++.|+++.+- ...+ ..+.+-...-...+... +|++|+.++.......+. +....+|++.+ |
T Consensus 59 ~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~--vdgiIi~~~~~~~~~~~~~~~~~~ip~V~~~~ 136 (342)
T 1jx6_A 59 WVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSK--SDYLIFTLDTTRHRKFVEHVLDSTNTKLILQN 136 (342)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTT--CSEEEECCSSSTTHHHHHHHHHHCSCEEEEET
T ss_pred HHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcC--CCEEEEeCChHhHHHHHHHHHHcCCCEEEEec
Q ss_pred CC--------CCcccccccChHHHHHHHHHHHHHHhhc-CCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC-cEEEEEeC
Q 042576 123 PY--------LGKLFLEEYDNKGMRETRKRAIEKAMKE-ARTWGIVLGTLGRQGNPRILERLQKRMEKKGF-DYVVIMMS 192 (313)
Q Consensus 123 Py--------s~~~~~e~~d~~~~l~~R~~~I~kak~~-A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gk-k~y~i~v~ 192 (313)
-. ...+.....|..+.-+.=-..+.+.. . .++|++|-|..+. ....-.+-.++-++++|. +...+..+
T Consensus 137 ~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~-Gg~~~I~~i~~~~~~-~~~~R~~Gf~~~l~~~~~~~~~~~~~~ 214 (342)
T 1jx6_A 137 ITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFF-PKHTYYSVLYFSEGY-ISDVRGDTFIHQVNRDNNFELQSAYYT 214 (342)
T ss_dssp CCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHS-CTTCEEEEECCSTTH-HHHHHHHHHHHHHHHHHCCEEEEEECC
T ss_pred CCCcccccccCCCceEEecCcHHHHHHHHHHHHHHc-CCCceEEEEEcCCcc-hhhHHHHHHHHHHHhCCCcEEEEEecC
Q ss_pred CCCHHH--------HhcCcCCccEEEEec
Q 042576 193 EISPAR--------VALFEDSVDAWIQIA 213 (313)
Q Consensus 193 einp~K--------Lanf~~~ID~fV~ia 213 (313)
..+.+. |...+ ++|+++...
T Consensus 215 ~~~~~~~~~~~~~~l~~~~-~~~ai~~~n 242 (342)
T 1jx6_A 215 KATKQSGYDAAKASLAKHP-DVDFIYACS 242 (342)
T ss_dssp CSSHHHHHHHHHHHHHHCC-CCSEEEESS
T ss_pred CCCHHHHHHHHHHHHHhCC-CccEEEECC
No 160
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=37.40 E-value=33 Score=31.87 Aligned_cols=58 Identities=9% Similarity=0.180 Sum_probs=38.4
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCc-CCccEEEE
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFE-DSVDAWIQ 211 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~-~~ID~fV~ 211 (313)
..++||+|+. .....+..+++-+++.+++.|....++...+- .+.+..+. ..+|..|+
T Consensus 24 ~s~~Igvv~~-~~~~f~~~l~~gi~~~a~~~g~~~~i~~~~~~-~~~i~~l~~~~vDGiIi 82 (412)
T 4fe7_A 24 KRHRITLLFN-ANKAYDRQVVEGVGEYLQASQSEWDIFIEEDF-RARIDKIKDWLGDGVIA 82 (412)
T ss_dssp CCEEEEEECC-TTSHHHHHHHHHHHHHHHHHTCCEEEEECC-C-C--------CCCSEEEE
T ss_pred CCceEEEEeC-CcchhhHHHHHHHHHHHHhcCCCeEEEecCCc-cchhhhHhcCCCCEEEE
Confidence 5678999994 65566668999999999999988777664432 22244442 14999887
No 161
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=37.20 E-value=43 Score=28.21 Aligned_cols=61 Identities=7% Similarity=-0.091 Sum_probs=43.7
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCc---EEEEEeCCCC-----HHHHhcCcCCccEEEEecCC
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGFD---YVVIMMSEIS-----PARVALFEDSVDAWIQIACP 215 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk---~y~i~v~ein-----p~KLanf~~~ID~fV~iaCP 215 (313)
-+||||++..-..=.-.+++--.+.|+++|.+ ..++-|--.+ ..||+.-. .+|++|-++|.
T Consensus 11 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~-~yDavIaLG~V 79 (158)
T 1di0_A 11 FKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTG-RYAAIVGAAFV 79 (158)
T ss_dssp EEEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHTS-CCSEEEEEEEC
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcC-CCCEEEEeecc
Confidence 47999999865554446666677788888854 4555554333 36777766 79999999998
No 162
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=36.76 E-value=2.3e+02 Score=25.18 Aligned_cols=167 Identities=14% Similarity=0.083 Sum_probs=83.0
Q ss_pred CeEEEEec---c---ccHhH-HHHHHHHHHhCCCeEEecCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCccc-HHHH
Q 042576 38 GKLILAGT---I---QFASA-IRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFH-LEAF 109 (313)
Q Consensus 38 ~~i~Lv~t---i---Qf~~~-l~~~~~~L~~~g~~v~ipq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFH-le~~ 109 (313)
.+|+++.+ + .|... ++.+.+.+++.|+++++-.... ..+....-..... ..+|.++.+|.+.-. +..+
T Consensus 5 ~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~g~~~~~~~~~~--~~~~~~~l~~l~~--~~~dgIi~~~~~~~~~~~~~ 80 (318)
T 2fqx_A 5 FVVGMVTDSGDIDDKSFNQQVWEGISRFAQENNAKCKYVTAST--DAEYVPSLSAFAD--ENMGLVVACGSFLVEAVIET 80 (318)
T ss_dssp CEEEEEESSSCTTSSSHHHHHHHHHHHHHHHTTCEEEEEECCS--GGGHHHHHHHHHH--TTCSEEEEESTTTHHHHHHH
T ss_pred cEEEEEEcCCCCCCccHHHHHHHHHHHHHHHhCCeEEEEeCCC--HHHHHHHHHHHHH--cCCCEEEECChhHHHHHHHH
Confidence 46777653 3 24444 5677888888899876532211 1110000000001 237888877643211 2333
Q ss_pred HhhCCCceEEEeCCCCC---cccccccChHHHHHHHHHH--HH-HHhhcC--CEEEEEEeCCCCCCcHHHHHHHHHHHHH
Q 042576 110 MISNPGIKTFRYDPYLG---KLFLEEYDNKGMRETRKRA--IE-KAMKEA--RTWGIVLGTLGRQGNPRILERLQKRMEK 181 (313)
Q Consensus 110 mi~np~~~~y~yDPys~---~~~~e~~d~~~~l~~R~~~--I~-kak~~A--~~~GIIvgTLg~Q~~~~ii~~l~~ll~~ 181 (313)
.-.+|..|+...|-+.. .+....+|.. ...+... .. ..+ .. ++||+|-|.-. .....-++-.++-+++
T Consensus 81 a~~~p~~p~v~id~~~~~~~~~~~v~~d~~--~~~~lag~~a~~l~~-~Gh~r~Ig~i~g~~~-~~~~~r~~Gf~~~~~~ 156 (318)
T 2fqx_A 81 SARFPKQKFLVIDAVVQDRDNVVSAVFGQN--EGSFLVGVAAALKAK-EAGKSAVGFIVGMEL-GMMPLFEAGFEAGVKA 156 (318)
T ss_dssp HHHCTTSCEEEESSCCCSCTTEEEEEECHH--HHHHHHHHHHHHHHH-HTTCCEEEEEESCCS-TTTHHHHHHHHHHHHH
T ss_pred HHHCCCCEEEEEcCccCCCCCEEEEEechH--HHHHHHHHHHHHHhc-cCCCcEEEEEeCccc-HHHHHHHHHHHHHHHH
Confidence 33568899999986422 2222233322 2222221 12 223 33 69999977632 2233334555677888
Q ss_pred cCCc--EEEEEeCCC-CHHHH-----hcCcCCccEEEEe
Q 042576 182 KGFD--YVVIMMSEI-SPARV-----ALFEDSVDAWIQI 212 (313)
Q Consensus 182 ~Gkk--~y~i~v~ei-np~KL-----anf~~~ID~fV~i 212 (313)
.|.+ ...+..+.. ++++= ..+...+|+++..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~ 195 (318)
T 2fqx_A 157 VDPDIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQV 195 (318)
T ss_dssp HCTTCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HCCCCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEEC
Confidence 8864 344455654 45431 1222247887654
No 163
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=36.67 E-value=57 Score=27.18 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=34.1
Q ss_pred EEEEEEeCCCCCC-cHHHHHHHHHH-HHHcCCcEEEEEeCCCCH
Q 042576 155 TWGIVLGTLGRQG-NPRILERLQKR-MEKKGFDYVVIMMSEISP 196 (313)
Q Consensus 155 ~~GIIvgTLg~Q~-~~~ii~~l~~l-l~~~Gkk~y~i~v~einp 196 (313)
++.||.||....| +..+++.+.+. +++.|.++.++-+.+...
T Consensus 4 kilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~ 47 (197)
T 2vzf_A 4 SIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDP 47 (197)
T ss_dssp EEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCH
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCc
Confidence 5789999985444 56799999999 998898888888888754
No 164
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=36.49 E-value=27 Score=28.27 Aligned_cols=53 Identities=26% Similarity=0.220 Sum_probs=36.7
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEE-eCCCCHHHHhcCcCCccEEEEecCC
Q 042576 156 WGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIM-MSEISPARVALFEDSVDAWIQIACP 215 (313)
Q Consensus 156 ~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~-v~einp~KLanf~~~ID~fV~iaCP 215 (313)
--+|+|. +.+...+.+++++++.+ .+.+ .+.++.+.+..+-...|++|..+-.
T Consensus 72 ~l~i~G~----~~~~~~~~l~~~~~~~~---~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~ 125 (200)
T 2bfw_A 72 RFIIIGK----GDPELEGWARSLEEKHG---NVKVITEMLSREFVRELYGSVDFVIIPSYF 125 (200)
T ss_dssp EEEEECC----BCHHHHHHHHHHHHHCT---TEEEECSCCCHHHHHHHHTTCSEEEECCSC
T ss_pred EEEEECC----CChHHHHHHHHHHHhcC---CEEEEeccCCHHHHHHHHHHCCEEEECCCC
Confidence 3455554 45556678888888887 4555 8999987777553378999986543
No 165
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=36.40 E-value=31 Score=30.14 Aligned_cols=63 Identities=19% Similarity=0.267 Sum_probs=44.7
Q ss_pred cCCEEEEEEeC-----CCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH----HhcC-cCCccEEEEecCC
Q 042576 152 EARTWGIVLGT-----LGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR----VALF-EDSVDAWIQIACP 215 (313)
Q Consensus 152 ~A~~~GIIvgT-----Lg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K----Lanf-~~~ID~fV~iaCP 215 (313)
..++||+|+.. +....+..+++-+++.++++|....++. ..-++++ +..+ ...+|.+|+.++.
T Consensus 21 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 93 (305)
T 3huu_A 21 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTV-SENSGDLYHEVKTMIQSKSVDGFILLYSL 93 (305)
T ss_dssp CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEECC-CSSHHHHHHHHHHHHHTTCCSEEEESSCB
T ss_pred CCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEEe-CCCChHHHHHHHHHHHhCCCCEEEEeCCc
Confidence 67899999998 7777788999999999999997755433 3333333 2222 1259999987654
No 166
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=35.70 E-value=1e+02 Score=25.93 Aligned_cols=55 Identities=24% Similarity=0.402 Sum_probs=43.2
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeC-CCCHHHHhcCcC--CccEEEEec
Q 042576 156 WGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMS-EISPARVALFED--SVDAWIQIA 213 (313)
Q Consensus 156 ~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~-einp~KLanf~~--~ID~fV~ia 213 (313)
+|||+|+ .-...+++.....|++-|.++-+-+.| .=+|++|..|.. +-++||.+|
T Consensus 2 V~Iimgs---~SD~~v~~~a~~~l~~~gi~~dv~V~saHR~p~~~~~~~~~a~~~ViIa~A 59 (157)
T 2ywx_A 2 ICIIMGS---ESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKADVFIAIA 59 (157)
T ss_dssp EEEEESS---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHCCCSEEEEEE
T ss_pred EEEEEcc---HHHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHHhcCCCEEEEEc
Confidence 7899887 778999999999999999998776665 668999988831 127777544
No 167
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=35.62 E-value=48 Score=28.68 Aligned_cols=59 Identities=8% Similarity=0.077 Sum_probs=38.1
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHH----hcC-cCCccEEEEecC
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARV----ALF-EDSVDAWIQIAC 214 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KL----anf-~~~ID~fV~iaC 214 (313)
.+||+|+.++.-..+..+++-+++.++++|.+..++.. -++++- .++ ...+|++|+.+.
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiii~~~ 66 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV--PDGEKTLNAIDSLAASGAKGFVICTP 66 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC--CSHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC--CCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 46888888877777777888888888888866544333 255432 222 114788777665
No 168
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=35.61 E-value=56 Score=28.35 Aligned_cols=62 Identities=5% Similarity=-0.054 Sum_probs=39.5
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCC-CCHHHHh----cC-cCCccEEEEecCC
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSE-ISPARVA----LF-EDSVDAWIQIACP 215 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~e-inp~KLa----nf-~~~ID~fV~iaCP 215 (313)
.+||+|+..+.-.....+++-+++.+++.|.+..+..... -++++.. ++ ...+|+.|+.+..
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~ 71 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPS 71 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCC
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 5788888887777777788888888888887655444332 2444322 22 1148887776543
No 169
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=34.83 E-value=38 Score=30.10 Aligned_cols=63 Identities=10% Similarity=0.160 Sum_probs=43.8
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH----HhcCc-CCccEEEEecCC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR----VALFE-DSVDAWIQIACP 215 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K----Lanf~-~~ID~fV~iaCP 215 (313)
..++||+|+..+....+..+++-+++.++++|....++. +.-++++ +..+. ..+|.+|+.+..
T Consensus 59 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 126 (332)
T 2hsg_A 59 KTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSN-SDQNQDKELHLLNNMLGKQVDGIIFMSGN 126 (332)
T ss_dssp -CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEE-CCSHHHHHHHHHHHTSCCSSCCEEECCSS
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEe-CCCChHHHHHHHHHHHhCCCcEEEEecCC
Confidence 457899999988878888999999999999998765543 3334433 33332 259999887653
No 170
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=34.82 E-value=1.1e+02 Score=24.89 Aligned_cols=39 Identities=13% Similarity=0.093 Sum_probs=31.2
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHH-cCCcEEEEEeCCC
Q 042576 155 TWGIVLGTLGRQGNPRILERLQKRMEK-KGFDYVVIMMSEI 194 (313)
Q Consensus 155 ~~GIIvgTLg~Q~~~~ii~~l~~ll~~-~Gkk~y~i~v~ei 194 (313)
++.||.|+. .-++..+++.+.+.+++ .|.++-++-+.+.
T Consensus 3 kilii~~S~-~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~ 42 (198)
T 3b6i_A 3 KVLVLYYSM-YGHIETMARAVAEGASKVDGAEVVVKRVPET 42 (198)
T ss_dssp EEEEEECCS-SSHHHHHHHHHHHHHHTSTTCEEEEEECCCC
T ss_pred eEEEEEeCC-CcHHHHHHHHHHHHHhhcCCCEEEEEEcccc
Confidence 578899994 33456799999999998 8988888888874
No 171
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=34.63 E-value=70 Score=26.89 Aligned_cols=61 Identities=13% Similarity=0.169 Sum_probs=43.9
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcC-C---cEEEEEeCCCC-----HHHHhcCcCCccEEEEecCC
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKG-F---DYVVIMMSEIS-----PARVALFEDSVDAWIQIACP 215 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~G-k---k~y~i~v~ein-----p~KLanf~~~ID~fV~iaCP 215 (313)
-+||||++..-..=.-.+++--.+.|+++| . ...++.|---+ ..+|+.-. .+|++|-++|-
T Consensus 13 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGafEiP~aa~~la~~~-~yDavIaLG~V 82 (156)
T 3nq4_A 13 ARVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSG-KYDAVVALGTV 82 (156)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCCTTSEEEEEESSTTTHHHHHHHHHHHC-SCSEEEEEEEE
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCcccceEEEEcCcHHHHHHHHHHHHhcC-CCCEEEEeeee
Confidence 479999987655544566777777888899 4 56666665443 35666655 69999999997
No 172
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=34.42 E-value=41 Score=28.32 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=43.2
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC--cEEEEEeCCCC-----HHHHhcCcCCccEEEEecCC
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGF--DYVVIMMSEIS-----PARVALFEDSVDAWIQIACP 215 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gk--k~y~i~v~ein-----p~KLanf~~~ID~fV~iaCP 215 (313)
.+||||++..-..=.-.+++--.+.|+++|. ...++.|---+ ..+|+.-. .+|++|-++|-
T Consensus 14 ~ri~IV~arfn~~I~~~Ll~ga~~~l~~~Gv~~~i~v~~VPGafEiP~aa~~la~~~-~yDavIaLG~V 81 (156)
T 1c2y_A 14 FRFAIVVARFNEFVTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGKSG-KYHAIVCLGAV 81 (156)
T ss_dssp CCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCSCCEEEEESSHHHHHHHHHHHHHTT-CCSEEEEEEEC
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHHHhcC-CCCEEEEeccc
Confidence 3699999876554444666667788888995 34555554322 36777766 79999999998
No 173
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=33.69 E-value=2.2e+02 Score=24.11 Aligned_cols=169 Identities=15% Similarity=0.105 Sum_probs=78.3
Q ss_pred eEEEEec----cccHhHHHHHHHHHHhCCCeEEecCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCcccH-HHH-Hhh
Q 042576 39 KLILAGT----IQFASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHL-EAF-MIS 112 (313)
Q Consensus 39 ~i~Lv~t----iQf~~~l~~~~~~L~~~g~~v~ipq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHl-e~~-mi~ 112 (313)
+|+++.. --|...++.+.+.+++.|+++++-.... .+.+-...-...+. ..+|++|+.+...-.. ..+ .+.
T Consensus 4 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~--~~vdgiI~~~~~~~~~~~~~~~~~ 80 (290)
T 2fn9_A 4 KMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQN-DTAKESAHFDAIIA--AGYDAIIFNPTDADGSIANVKRAK 80 (290)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHHHHHH--TTCSEEEECCSCTTTTHHHHHHHH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCCCC-CHHHHHHHHHHHHH--cCCCEEEEecCChHHHHHHHHHHH
Confidence 4665532 2345556778888888999876522110 00000000000001 1378888765322111 112 133
Q ss_pred CCCceEEEeCCCCCc---ccc-cccChHHHHH-HHHHHHHHHhh---cCCE--EEEEEeCCCCCCcHHHHHHHHHHHHHc
Q 042576 113 NPGIKTFRYDPYLGK---LFL-EEYDNKGMRE-TRKRAIEKAMK---EART--WGIVLGTLGRQGNPRILERLQKRMEKK 182 (313)
Q Consensus 113 np~~~~y~yDPys~~---~~~-e~~d~~~~l~-~R~~~I~kak~---~A~~--~GIIvgTLg~Q~~~~ii~~l~~ll~~~ 182 (313)
...+|++.+|..... +.. ...|..+.-+ .=.+++++... ..++ +++|-|..+......-.+-.++-++++
T Consensus 81 ~~~iPvV~~~~~~~~~~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~~R~~gf~~~l~~~ 160 (290)
T 2fn9_A 81 EAGIPVFCVDRGINARGLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQY 160 (290)
T ss_dssp HTTCCEEEESSCCSCSSSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred HCCCeEEEEecCCCCCCceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHHHHHHHHHHHHHhC
Confidence 357888888854321 222 2334332211 11223343110 2556 566666544333333444456667777
Q ss_pred -CCcEEEEEeCCCCHHH--------HhcCcCCccEEEE
Q 042576 183 -GFDYVVIMMSEISPAR--------VALFEDSVDAWIQ 211 (313)
Q Consensus 183 -Gkk~y~i~v~einp~K--------Lanf~~~ID~fV~ 211 (313)
|.+...+..+..+++. |...+ ++|+++.
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~ai~~ 197 (290)
T 2fn9_A 161 PEFKMVAQQSAEFDRDTAYKVTEQILQAHP-EIKAIWC 197 (290)
T ss_dssp TTEEEEEEEECTTCHHHHHHHHHHHHHHCT-TCCEEEE
T ss_pred CCCEEEEeccCCCCHHHHHHHHHHHHHhCC-CCcEEEE
Confidence 7665444455555532 23334 5888663
No 174
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=33.54 E-value=68 Score=27.16 Aligned_cols=58 Identities=14% Similarity=0.062 Sum_probs=41.4
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEecCCC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPR 216 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~iaCPr 216 (313)
..+++.|+.+|..| +...++++|.+.|.+.|.++.++-+++.. ..+. +.|.+ +++||-
T Consensus 20 ~~~kv~IvY~S~tG-nTe~~A~~ia~~l~~~g~~v~v~~l~~~~----~~l~-~~d~v-i~g~~T 77 (191)
T 1bvy_F 20 HNTPLLVLYGSNMG-TAEGTARDLADIAMSKGFAPQVATLDSHA----GNLP-REGAV-LIVTAS 77 (191)
T ss_dssp -CCCEEEEEECSSS-HHHHHHHHHHHHHHTTTCCCEEEEGGGST----TCCC-SSSEE-EEEECC
T ss_pred CCCeEEEEEECCCh-HHHHHHHHHHHHHHhCCCceEEeeHHHhh----hhhh-hCCeE-EEEEee
Confidence 45678999999753 34568999999999999988888888752 2455 45654 556664
No 175
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=32.96 E-value=1.1e+02 Score=27.90 Aligned_cols=61 Identities=11% Similarity=0.180 Sum_probs=45.4
Q ss_pred CCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHh-cCcCCccEEEEecCCC
Q 042576 153 ARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVA-LFEDSVDAWIQIACPR 216 (313)
Q Consensus 153 A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLa-nf~~~ID~fV~iaCPr 216 (313)
..++.|+.+|.. -+...+++.+.+.+.+.|.++-++-+.+..++.+. .+. +.|++ ++++|.
T Consensus 256 ~~k~~i~~~S~~-gnT~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~-~~d~i-iigsP~ 317 (404)
T 2ohh_A 256 DERVTVIYDTMH-GSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDIL-ESGAI-ALGAPT 317 (404)
T ss_dssp CSEEEEEECCSS-SHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHH-TCSEE-EEECCE
T ss_pred CCcEEEEEECCC-hHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHH-HCCEE-EEECcc
Confidence 457888888864 35678999999999999999989999988876443 344 46764 456674
No 176
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=32.37 E-value=98 Score=31.58 Aligned_cols=63 Identities=3% Similarity=0.001 Sum_probs=46.6
Q ss_pred HHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHH-HcCCcEEEEEeCCCCHHHHhcCcCCccEEEEe
Q 042576 146 IEKAMKEARTWGIVLGTLGRQGNPRILERLQKRME-KKGFDYVVIMMSEISPARVALFEDSVDAWIQI 212 (313)
Q Consensus 146 I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~-~~Gkk~y~i~v~einp~KLanf~~~ID~fV~i 212 (313)
+++...+.+++.|+.||..|. ...++++|.+.|+ +.|.++.++-+++..++.|..++ |.+|++
T Consensus 42 ~~~~~~~~~ki~IlY~S~tGn-te~~A~~ia~~l~~~~g~~v~v~~l~~~~~~~l~~~~---~~vi~~ 105 (682)
T 2bpo_A 42 AQVVTENNKNYLVLYASQTGT-AEGFAKAFSKELVAKFNLNVMCADVENYDFESLNDVP---VIVSIF 105 (682)
T ss_dssp HHHHHHTTCSEEEEEECSSSH-HHHHHHHHHHHHHHHHCCCEEEEETTSSCGGGGGGCC---SEEEEE
T ss_pred HHHHhcCCCeEEEEEECCchH-HHHHHHHHHHHhHHhcCCceEEeehHHCCHHHHhhcC---CeEEEE
Confidence 334432456799999998643 4579999999999 88999999999999888776552 454444
No 177
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=32.20 E-value=1e+02 Score=28.09 Aligned_cols=57 Identities=16% Similarity=0.022 Sum_probs=37.0
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHH-HHh-cC-cCCccEEEEe
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPA-RVA-LF-EDSVDAWIQI 212 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~-KLa-nf-~~~ID~fV~i 212 (313)
++++||+...++.+ +.++++.+.|+++|.++.+........+ .++ .. .++.|+.|.+
T Consensus 30 ~~~~vi~Np~sg~~--~~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~ 89 (332)
T 2bon_A 30 PASLLILNGKSTDN--LPLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAG 89 (332)
T ss_dssp CCEEEEECSSSTTC--HHHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEE
T ss_pred ceEEEEECCCCCCC--chHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEE
Confidence 46889999888877 6778888888888888766654433322 221 11 1146777765
No 178
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=31.98 E-value=2e+02 Score=25.39 Aligned_cols=48 Identities=17% Similarity=0.112 Sum_probs=35.9
Q ss_pred CChHHHHHHHHHhCCCCCeEEEEeccccHh---HHHHHHHHHHhCCCeEEe
Q 042576 21 IDVNRLIDTIKVNYSDPGKLILAGTIQFAS---AIRAAKPELEKQGFKVMI 68 (313)
Q Consensus 21 iD~~~~i~~i~~~f~~~~~i~Lv~tiQf~~---~l~~~~~~L~~~g~~v~i 68 (313)
.++..-++.+++.+|..++|+++++-.... ..+.+++.++..|.+++.
T Consensus 124 ~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~ 174 (302)
T 3lkv_A 124 SPVEQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVE 174 (302)
T ss_dssp CCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred cCHHHHHHHHHHhCCCCCEEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEE
Confidence 456777888899999999999998765443 345577777888888653
No 179
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=31.94 E-value=50 Score=27.79 Aligned_cols=60 Identities=13% Similarity=0.011 Sum_probs=43.0
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHcCCc---EEEEEeCCCC-----HHHHhcCcCCccEEEEecCC
Q 042576 155 TWGIVLGTLGRQGNPRILERLQKRMEKKGFD---YVVIMMSEIS-----PARVALFEDSVDAWIQIACP 215 (313)
Q Consensus 155 ~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk---~y~i~v~ein-----p~KLanf~~~ID~fV~iaCP 215 (313)
+||||+++.-..=.-.+++--.+.|+++|.+ ..++.|--.+ ..||+.-. .+|++|-++|.
T Consensus 13 ri~IV~arfn~~I~~~Ll~gA~~~l~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~-~yDavIaLG~V 80 (157)
T 2obx_A 13 RIAVVRARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETG-RYGAVLGTAFV 80 (157)
T ss_dssp EEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHHT-CCSEEEEEEEC
T ss_pred EEEEEEeeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcC-CCCEEEEeecc
Confidence 7999999865554456666777788888854 4555554333 26777666 69999999998
No 180
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=31.87 E-value=44 Score=27.93 Aligned_cols=41 Identities=10% Similarity=0.057 Sum_probs=33.5
Q ss_pred CCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCC
Q 042576 153 ARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEI 194 (313)
Q Consensus 153 A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~ei 194 (313)
-.++-||.++.. -++..+++.+.+.+++.|.++.++-+.+.
T Consensus 6 mmkilii~~S~~-g~T~~la~~i~~~l~~~g~~v~~~~l~~~ 46 (211)
T 1ydg_A 6 PVKLAIVFYSST-GTGYAMAQEAAEAGRAAGAEVRLLKVRET 46 (211)
T ss_dssp CCEEEEEECCSS-SHHHHHHHHHHHHHHHTTCEEEEEECCCC
T ss_pred CCeEEEEEECCC-ChHHHHHHHHHHHHhcCCCEEEEEecccc
Confidence 457889999983 35667999999999999999888888774
No 181
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=31.87 E-value=1.3e+02 Score=27.28 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=34.3
Q ss_pred CEEEEEEeCCCCCCcH-HHHHHHHHHHHHcCCcEEEEEeCCCCHH-HHh-c-CcCCccEEEEe
Q 042576 154 RTWGIVLGTLGRQGNP-RILERLQKRMEKKGFDYVVIMMSEISPA-RVA-L-FEDSVDAWIQI 212 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~-~ii~~l~~ll~~~Gkk~y~i~v~einp~-KLa-n-f~~~ID~fV~i 212 (313)
++++||++..++++.. ++.+++++.|+++|.++.++.-.....+ .++ . ..++.|+.|.+
T Consensus 25 ~~i~vI~NP~sg~~~~~~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~ 87 (337)
T 2qv7_A 25 KRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAA 87 (337)
T ss_dssp EEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEE
T ss_pred ceEEEEECCCCCCCchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEE
Confidence 3577888877776643 5677778888877776665554433222 221 1 11146766654
No 182
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=31.82 E-value=21 Score=31.20 Aligned_cols=63 Identities=14% Similarity=0.145 Sum_probs=39.1
Q ss_pred cCCEEEEEE-----eCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH----HhcCc-CCccEEEEecCC
Q 042576 152 EARTWGIVL-----GTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR----VALFE-DSVDAWIQIACP 215 (313)
Q Consensus 152 ~A~~~GIIv-----gTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K----Lanf~-~~ID~fV~iaCP 215 (313)
..++||+|+ ..+....+..+++.+++.++++|....++.. .-++++ +..+. ..+|.+|+.+..
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 78 (295)
T 3hcw_A 6 QTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVS-NNMNDLMDEVYKMIKQRMVDAFILLYSK 78 (295)
T ss_dssp CSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCC-CSHHHHHHHHHHHHHTTCCSEEEESCCC
T ss_pred CCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcC-CCChHHHHHHHHHHHhCCcCEEEEcCcc
Confidence 567888888 4555666778888888888888876544332 222322 12221 148888876543
No 183
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=31.81 E-value=74 Score=28.33 Aligned_cols=60 Identities=12% Similarity=0.040 Sum_probs=39.7
Q ss_pred CCEEEEEEeCCCC-CCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH----HhcCc---CCccEEEEec
Q 042576 153 ARTWGIVLGTLGR-QGNPRILERLQKRMEKKGFDYVVIMMSEISPAR----VALFE---DSVDAWIQIA 213 (313)
Q Consensus 153 A~~~GIIvgTLg~-Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K----Lanf~---~~ID~fV~ia 213 (313)
..+||+|+..+.. .....+++-+++.+++.|.+..++ -++-++++ +.++- ..+|+.|+++
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~-~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~ 70 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRIL-YAERDPQNTLQQARELFQGRDKPDYLMLVN 70 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEE-ECTTCHHHHHHHHHHHHHSSSCCSEEEEEC
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEE-ECCCCHHHHHHHHHHHHhcCCCCCEEEEeC
Confidence 4678888887765 556678888888888888776555 34445554 22221 1588888765
No 184
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=31.64 E-value=1.1e+02 Score=28.07 Aligned_cols=60 Identities=10% Similarity=0.195 Sum_probs=44.1
Q ss_pred CCEEEEEEeCCCCCCc-HHHHHHHHHHHHHcCCcEEEEEeCCCCHHHH-hcCcCCccEEEEecCCC
Q 042576 153 ARTWGIVLGTLGRQGN-PRILERLQKRMEKKGFDYVVIMMSEISPARV-ALFEDSVDAWIQIACPR 216 (313)
Q Consensus 153 A~~~GIIvgTLg~Q~~-~~ii~~l~~ll~~~Gkk~y~i~v~einp~KL-anf~~~ID~fV~iaCPr 216 (313)
.+++.|+-+|. .|+ ..+++.+.+.+++.|...-++-+.+..+..| ..+. +.|++| +++|-
T Consensus 252 ~~kv~i~y~S~--~Gnt~~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~d~ii-~gsp~ 313 (402)
T 1e5d_A 252 TNKVVIFYDSM--WHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEIS-DAGAVI-VGSPT 313 (402)
T ss_dssp CSEEEEEECCS--SSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHH-TCSEEE-EECCC
T ss_pred CCcEEEEEECC--ChhHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHH-HCCEEE-EECCc
Confidence 46888888876 454 5678999999999998888888998887775 3445 567655 45554
No 185
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=31.62 E-value=2.4e+02 Score=23.89 Aligned_cols=172 Identities=9% Similarity=0.022 Sum_probs=83.6
Q ss_pred CeEEEEe-cc----ccHhHHHHHHHHHHhC-CCeEEecCC--CCCCCccccCCCCCCCCCCCCCCeEEEecCCcccHH-H
Q 042576 38 GKLILAG-TI----QFASAIRAAKPELEKQ-GFKVMIPQS--KPLSAGEVLGCTAPKIPARESDFNLVFIADGRFHLE-A 108 (313)
Q Consensus 38 ~~i~Lv~-ti----Qf~~~l~~~~~~L~~~-g~~v~ipq~--~pls~GevLGCt~~~~~~~~~~d~iv~igdGrFHle-~ 108 (313)
.+|+++. ++ -|...++.+.+.+++. |+.+.+-.. ....+.+....-..... ..+|++|+.+...-... .
T Consensus 9 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~vdgiii~~~~~~~~~~~ 86 (304)
T 3gbv_A 9 YTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIE--EQPDGVMFAPTVPQYTKGF 86 (304)
T ss_dssp EEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHT--TCCSEEEECCSSGGGTHHH
T ss_pred ceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHh--cCCCEEEECCCChHHHHHH
Confidence 3577553 32 3555567788888888 888665211 00011000000000001 23789888764321111 1
Q ss_pred H-HhhCCCceEEEeCCCCC---cccccccChHHHHHH-HHHHHHHHhhcCCEEEEEEeCC----CCCCcHHHHHHHHHHH
Q 042576 109 F-MISNPGIKTFRYDPYLG---KLFLEEYDNKGMRET-RKRAIEKAMKEARTWGIVLGTL----GRQGNPRILERLQKRM 179 (313)
Q Consensus 109 ~-mi~np~~~~y~yDPys~---~~~~e~~d~~~~l~~-R~~~I~kak~~A~~~GIIvgTL----g~Q~~~~ii~~l~~ll 179 (313)
+ .+....+|++.+|-... .+.....|....-+. =.+++++.. ..+++|+|.+.. +......-.+-.++-+
T Consensus 87 ~~~~~~~~iPvV~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~-~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l 165 (304)
T 3gbv_A 87 TDALNELGIPYIYIDSQIKDAPPLAFFGQNSHQSGYFAARMLMLLAV-NDREIVIFRKIHEGVIGSNQQESREIGFRQYM 165 (304)
T ss_dssp HHHHHHHTCCEEEESSCCTTSCCSEEEECCHHHHHHHHHHHHHHHST-TCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCeEEEEeCCCCCCCceEEEecChHHHHHHHHHHHHHHhC-CCCeEEEEEecccCCccchhHHHHHHHHHHHH
Confidence 1 12334788998885432 233334454332211 122333333 348999999543 3333344555567778
Q ss_pred HHcCCcEEE--EEeCCCC--------HHHHhcCcCCccEEEEec
Q 042576 180 EKKGFDYVV--IMMSEIS--------PARVALFEDSVDAWIQIA 213 (313)
Q Consensus 180 ~~~Gkk~y~--i~v~ein--------p~KLanf~~~ID~fV~ia 213 (313)
+++|.+.-. +..+.-+ .+-|...+ ++|+++-..
T Consensus 166 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ai~~~~ 208 (304)
T 3gbv_A 166 QEHHPACNILELNLHADLNIEDSRMLDDFFREHP-DVKHGITFN 208 (304)
T ss_dssp HHHCTTSEEEEEEEESSCSSCHHHHHHHHHHHCT-TCCEEEESS
T ss_pred HhhCCCcEEEEeeecCCCHHHHHHHHHHHHHhCC-CeEEEEEcC
Confidence 888865433 3333333 22233445 689877554
No 186
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=31.44 E-value=59 Score=27.92 Aligned_cols=62 Identities=15% Similarity=0.212 Sum_probs=42.4
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHH----HhcC-cCCccEEEEecCC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPAR----VALF-EDSVDAWIQIACP 215 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~K----Lanf-~~~ID~fV~iaCP 215 (313)
..++||+|+.. ....+..+++-+++.++++|.+..++. ..-++++ +..+ ...+|++|+.+..
T Consensus 7 ~~~~Igvi~~~-~~~~~~~~~~gi~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 73 (288)
T 2qu7_A 7 RSNIIAFIVPD-QNPFFTEVLTEISHECQKHHLHVAVAS-SEENEDKQQDLIETFVSQNVSAIILVPVK 73 (288)
T ss_dssp CEEEEEEEESS-CCHHHHHHHHHHHHHHGGGTCEEEEEE-CTTCHHHHHHHHHHHHHTTEEEEEECCSS
T ss_pred CCCEEEEEECC-CCchHHHHHHHHHHHHHHCCCEEEEEe-CCCCHHHHHHHHHHHHHcCccEEEEecCC
Confidence 45689999987 555667888999999999998765543 3445544 2222 1258998887653
No 187
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=30.74 E-value=1.1e+02 Score=25.08 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=34.9
Q ss_pred CChHHHHHHHHHhCCCCCeEEEEec-------cccHhHHHHHHHHHHhCCCeEE
Q 042576 21 IDVNRLIDTIKVNYSDPGKLILAGT-------IQFASAIRAAKPELEKQGFKVM 67 (313)
Q Consensus 21 iD~~~~i~~i~~~f~~~~~i~Lv~t-------iQf~~~l~~~~~~L~~~g~~v~ 67 (313)
-++..|++.+...--.+++++++++ -.|..++..+.+.|+..|.+++
T Consensus 72 ~~~~~fl~~l~~~~l~gk~~a~fg~g~~~~y~~~~~~a~~~l~~~l~~~G~~~~ 125 (179)
T 1yob_A 72 ESWEEFLPKIEGLDFSGKTVALFGLGDQVGYPENYLDALGELYSFFKDRGAKIV 125 (179)
T ss_dssp CCHHHHHHHHTTCCCTTCEEEEEEECCTTTCTTTTTHHHHHHHHHHHTTTCEEE
T ss_pred hHHHHHHHHhhhcccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEE
Confidence 5677888877653223567888886 1478889999999998888765
No 188
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=30.57 E-value=31 Score=34.88 Aligned_cols=51 Identities=16% Similarity=0.147 Sum_probs=42.1
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCc
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFE 203 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~ 203 (313)
..+.+.|+-||..| +...++++|.+.+++.|.++.++-+++.+++.|..++
T Consensus 17 ~~~~i~I~YgS~tG-nte~~A~~la~~l~~~g~~~~v~~~~~~~~~~l~~~~ 67 (618)
T 3qe2_A 17 TGRNIIVFYGSQTG-TAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLP 67 (618)
T ss_dssp HTCSEEEEEECSSS-HHHHHHHHHHHHGGGGTCCEEEECGGGSCGGGGGGGG
T ss_pred cCCeEEEEEECChh-HHHHHHHHHHHHHHhCCCceEEechHHcCHHHhhhcc
Confidence 56779999999753 2345889999999999999988889999988887765
No 189
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=30.42 E-value=84 Score=27.80 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=43.8
Q ss_pred CEEEEEEeCCCCCCc-HHHHHHHHHHHHHcCCcEEEEEeCCCC-----------HHHH-hcCcCCccEEEEecCCC
Q 042576 154 RTWGIVLGTLGRQGN-PRILERLQKRMEKKGFDYVVIMMSEIS-----------PARV-ALFEDSVDAWIQIACPR 216 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~-~~ii~~l~~ll~~~Gkk~y~i~v~ein-----------p~KL-anf~~~ID~fV~iaCPr 216 (313)
.++.||.|+.-..++ ..+++.+.+.+++.|.++-++-+.++. ...+ +.+. +-|++|+. +|.
T Consensus 35 mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~-~AD~iI~~-sP~ 108 (247)
T 2q62_A 35 PRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSI-WSEGQVWV-SPE 108 (247)
T ss_dssp CEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHH-HCSEEEEE-EEC
T ss_pred CeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHH-HCCEEEEE-eCC
Confidence 578999999865454 468899999999999999999888875 2222 2334 47887664 454
No 190
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=30.41 E-value=40 Score=29.15 Aligned_cols=86 Identities=17% Similarity=0.257 Sum_probs=52.6
Q ss_pred HHHHHhhcCCEEEEEEeC-CCCCCcHHHHHHHHHHHHHcCCcE---------------------------EEEEeCCCCH
Q 042576 145 AIEKAMKEARTWGIVLGT-LGRQGNPRILERLQKRMEKKGFDY---------------------------VVIMMSEISP 196 (313)
Q Consensus 145 ~I~kak~~A~~~GIIvgT-Lg~Q~~~~ii~~l~~ll~~~Gkk~---------------------------y~i~v~einp 196 (313)
+.+..+ +|+++-|+=|- +-...-...+..|-++|+++|+++ .++-|.|||+
T Consensus 23 ~a~~l~-~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMdeIN~ 101 (186)
T 2bru_C 23 TAELLK-NSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEIND 101 (186)
T ss_dssp HHHHHH-HCSEEEEECSBHHHHTTTHHHHHHHHHHHHHHCCEEEEEECSSSSSSSSTHHHHHHHHTCCTTTEEESCCCHH
T ss_pred HHHHHH-hCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceEEEEecCCCHHHHhhHHHHhc
Confidence 334445 67777555442 222333455667777777777765 4688999998
Q ss_pred HHHhcCcCCccEEEEecCCCc----cc-ccc-CCCCCcccCHHHHH
Q 042576 197 ARVALFEDSVDAWIQIACPRL----SI-DWG-DAFTKPLLTPFEAE 236 (313)
Q Consensus 197 ~KLanf~~~ID~fV~iaCPrl----si-d~~-~~f~kPvLTPyE~~ 236 (313)
+ |+ +.|+-++|+---. +. |.+ --+--|||..+++.
T Consensus 102 d----f~-~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk 142 (186)
T 2bru_C 102 D----FA-DTDTVLVIGANDTVNPAAQDDPKSPIAGMPVLEVWKAQ 142 (186)
T ss_dssp H----HH-HCSEEEECBCGGGGCGGGTTSTTSSSTTCCCCCCTTSS
T ss_pred c----cc-cCCEEEEeccccccCccccCCCCCCcCCCeeeccccCC
Confidence 5 88 7999888874331 22 222 23667887766554
No 191
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=30.27 E-value=45 Score=26.14 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=31.3
Q ss_pred ChHHHHHHHHHhCCCCCeEEEEec-----cccHhHHHHHHHHHHhCCCeEE
Q 042576 22 DVNRLIDTIKVNYSDPGKLILAGT-----IQFASAIRAAKPELEKQGFKVM 67 (313)
Q Consensus 22 D~~~~i~~i~~~f~~~~~i~Lv~t-----iQf~~~l~~~~~~L~~~g~~v~ 67 (313)
.+..+++.+...--.+++++++++ -.|..++..+.+.|+..|.+++
T Consensus 70 ~~~~fl~~l~~~~l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~ 120 (148)
T 3f6r_A 70 DFLSLFEEFDRIGLAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGATII 120 (148)
T ss_dssp HHHHHHTTGGGTCCTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHhhccCCCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCCEEe
Confidence 345566655432223567888865 3467789999999999998765
No 192
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=29.35 E-value=56 Score=27.61 Aligned_cols=61 Identities=13% Similarity=-0.054 Sum_probs=42.2
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHH-cCCc---EEEEEeCCCC-----HHHHhcCcCCccEEEEecCC
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEK-KGFD---YVVIMMSEIS-----PARVALFEDSVDAWIQIACP 215 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~-~Gkk---~y~i~v~ein-----p~KLanf~~~ID~fV~iaCP 215 (313)
-+||||++..-..=.-.+++--.+.|++ +|.+ ..++.|---+ ..||+... .+|++|-++|-
T Consensus 18 ~riaIV~arfn~~I~~~Ll~ga~~~l~~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~-~yDavIaLG~V 87 (159)
T 1kz1_A 18 LRILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASIARN-TYDAVIGIGVL 87 (159)
T ss_dssp CCEEEEECCTTHHHHHHHHHHHHHHHHHHHCCCGGGEEEEECSSGGGHHHHHHHHHHHS-CCSEEEEEEEE
T ss_pred CEEEEEEeeCcHHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcC-CCCEEEEeccc
Confidence 3699999876544444566666777888 7853 4555554332 36777766 69999999997
No 193
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=29.14 E-value=1.1e+02 Score=26.59 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=41.3
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC----cEEEE-EeCCCCHHHHhcC-----cCCccEEEEecC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGF----DYVVI-MMSEISPARVALF-----EDSVDAWIQIAC 214 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gk----k~y~i-~v~einp~KLanf-----~~~ID~fV~iaC 214 (313)
+.++|||| -++......++++-+++.++++|. ...++ .-++=++++...+ ...+|..|.++-
T Consensus 7 ~t~~IGvi-~~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~ 78 (302)
T 2qh8_A 7 KTAKVAVS-QIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIAT 78 (302)
T ss_dssp CCEEEEEE-ESSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESH
T ss_pred CCcEEEEE-EeccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCh
Confidence 56789987 467767778899999999999887 54443 3345555544322 114888877653
No 194
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=29.06 E-value=1.1e+02 Score=24.84 Aligned_cols=40 Identities=5% Similarity=0.001 Sum_probs=32.0
Q ss_pred EEEEEEeCCCC--CCcHHHHHHHHHHHHHcC--CcEEEEEeCCC
Q 042576 155 TWGIVLGTLGR--QGNPRILERLQKRMEKKG--FDYVVIMMSEI 194 (313)
Q Consensus 155 ~~GIIvgTLg~--Q~~~~ii~~l~~ll~~~G--kk~y~i~v~ei 194 (313)
++.||.|+... ..+..+++.+.+.++++| -++.++-+.+.
T Consensus 3 kilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~ 46 (201)
T 1t5b_A 3 KVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAAN 46 (201)
T ss_dssp EEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTS
T ss_pred eEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCC
Confidence 67899999874 456679999999999987 77778877764
No 195
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=28.98 E-value=38 Score=31.41 Aligned_cols=37 Identities=16% Similarity=0.257 Sum_probs=28.8
Q ss_pred CCCCeEEEEeccc-----cHhHHHHHHHHHHhCCCeEEecCC
Q 042576 35 SDPGKLILAGTIQ-----FASAIRAAKPELEKQGFKVMIPQS 71 (313)
Q Consensus 35 ~~~~~i~Lv~tiQ-----f~~~l~~~~~~L~~~g~~v~ipq~ 71 (313)
.++.+|+|++... ..+.++...+.|++.|++|+++..
T Consensus 10 ~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~ 51 (327)
T 4h1h_A 10 KQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEH 51 (327)
T ss_dssp CTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTT
T ss_pred CCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcc
Confidence 4577899997542 456788889999999999987553
No 196
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=28.59 E-value=70 Score=27.22 Aligned_cols=61 Identities=16% Similarity=0.148 Sum_probs=41.8
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC---cEEEEEeCCCC-----HHHHhc-----CcCCccEEEEecCC
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGF---DYVVIMMSEIS-----PARVAL-----FEDSVDAWIQIACP 215 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gk---k~y~i~v~ein-----p~KLan-----f~~~ID~fV~iaCP 215 (313)
-+||||++..-..=.-.+++--.+.|+++|. ...++.|--.+ ..||+. -. .+|++|-++|.
T Consensus 17 ~ri~IV~arfn~~I~~~Ll~gA~~~L~~~Gv~~~~i~v~~VPGafEiP~aak~la~~~~~~~~-~yDavIaLG~V 90 (168)
T 1ejb_A 17 IRVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKLGK-PLDVVIPIGVL 90 (168)
T ss_dssp CCEEEEECCTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEECSSGGGHHHHHHHHHHHHHHTTC-CCSEEEEEEEE
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhhccccCC-CcCEEEEeccc
Confidence 3699999876554444666667788888884 34455554332 256665 44 59999999998
No 197
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=28.50 E-value=39 Score=31.55 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=28.9
Q ss_pred CCCCeEEEEeccc-----cHhHHHHHHHHHHhCCCeEEecCC
Q 042576 35 SDPGKLILAGTIQ-----FASAIRAAKPELEKQGFKVMIPQS 71 (313)
Q Consensus 35 ~~~~~i~Lv~tiQ-----f~~~l~~~~~~L~~~g~~v~ipq~ 71 (313)
.++.+|+|++... ..+.++...+.|++.|++|+++..
T Consensus 11 ~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~ 52 (336)
T 3sr3_A 11 KYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSL 52 (336)
T ss_dssp CTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTT
T ss_pred CCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEccc
Confidence 4577899998654 346788889999999999987543
No 198
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=27.53 E-value=19 Score=29.82 Aligned_cols=55 Identities=11% Similarity=0.209 Sum_probs=34.9
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEecCCC
Q 042576 155 TWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPR 216 (313)
Q Consensus 155 ~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~iaCPr 216 (313)
++.|+.+|..+. ...+++.|.+.|... .++-++-+.+..++.|.. .|. |+++||-
T Consensus 3 kilIiY~S~tGn-T~~iA~~ia~~l~~~-~~v~~~~~~~~~~~~l~~----~d~-ii~g~pt 57 (182)
T 2wc1_A 3 KIGLFFGSDTGT-TRKIAKQIKDMFDDE-VMAKPLNVNRADVADFMA----YDF-LILGTPT 57 (182)
T ss_dssp SEEEEECCSSSH-HHHHHHHHHTTSCTT-TBCCCEEGGGCCHHHHHH----CSE-EEEEEEC
T ss_pred EEEEEEECCCch-HHHHHHHHHHHhccc-CceEEEEcccCCHHHHhh----CCe-EEEEEee
Confidence 578999998543 456777777776543 344566677777776654 344 4455553
No 199
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=26.79 E-value=43 Score=31.18 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=29.1
Q ss_pred CCCCCeEEEEecccc-----HhHHHHHHHHHHhCCCeEEecC
Q 042576 34 YSDPGKLILAGTIQF-----ASAIRAAKPELEKQGFKVMIPQ 70 (313)
Q Consensus 34 f~~~~~i~Lv~tiQf-----~~~l~~~~~~L~~~g~~v~ipq 70 (313)
+.++.+|+|++.... .+.++...+.|++.|++|++..
T Consensus 9 L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~ 50 (331)
T 4e5s_A 9 LKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFST 50 (331)
T ss_dssp CCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECT
T ss_pred CCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECC
Confidence 345778999975544 5678888999999999998754
No 200
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=26.31 E-value=75 Score=29.10 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeC
Q 042576 139 RETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMS 192 (313)
Q Consensus 139 l~~R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~ 192 (313)
+..+..--.++. .||+|.|- | +||=|--.+.-+|---|.+.|||+.+|=.+
T Consensus 35 ~~~~~~~~~~i~-~aKVIAIa-G-KGGVGKTTtavNLA~aLA~~GkkVllID~D 85 (314)
T 3fwy_A 35 VQVHLDEADKIT-GAKVFAVY-G-KGGIGKSTTSSNLSAAFSILGKRVLQIGCD 85 (314)
T ss_dssp -------------CCEEEEEE-C-STTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred cccccCcccCCC-CceEEEEE-C-CCccCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 334444455667 88899985 7 999999999999999999999998888766
No 201
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=26.03 E-value=25 Score=32.05 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=40.1
Q ss_pred EEEEEeCCCCCCcHHHHHHHHHHHHHcCCcE-------EEEEeCCCCHHHHhcCcCCccEEEEecC
Q 042576 156 WGIVLGTLGRQGNPRILERLQKRMEKKGFDY-------VVIMMSEISPARVALFEDSVDAWIQIAC 214 (313)
Q Consensus 156 ~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~-------y~i~v~einp~KLanf~~~ID~fV~iaC 214 (313)
--+|+|.-.......+.+.+++++++.|..- .+++.|.++.+.+..+-...|+||+.+-
T Consensus 217 ~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~ 282 (413)
T 3oy2_A 217 KVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSS 282 (413)
T ss_dssp CEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHCSEEEECCS
T ss_pred EEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHhCCEEEeCCC
Confidence 3456665333333345677888888888776 4788898998888755336899998553
No 202
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=25.75 E-value=2.1e+02 Score=24.30 Aligned_cols=137 Identities=11% Similarity=0.093 Sum_probs=64.9
Q ss_pred eEEEEec---cccHhHHHHHHHHHHhCCCeEEecCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCc--ccHHHHHhhC
Q 042576 39 KLILAGT---IQFASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGR--FHLEAFMISN 113 (313)
Q Consensus 39 ~i~Lv~t---iQf~~~l~~~~~~L~~~g~~v~ipq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGr--FHle~~mi~n 113 (313)
+|+++.. --|...++.+.+.+++.|+++++-.... .+.+-...-...+. ..+|++|+.+... -.+..+
T Consensus 10 ~Igvi~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~l~~--~~vdgiI~~~~~~~~~~~~~l---- 82 (288)
T 2qu7_A 10 IIAFIVPDQNPFFTEVLTEISHECQKHHLHVAVASSEE-NEDKQQDLIETFVS--QNVSAIILVPVKSKFQMKREW---- 82 (288)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHHHGGGTCEEEEEECTT-CHHHHHHHHHHHHH--TTEEEEEECCSSSCCCCCGGG----
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHCCCEEEEEeCCC-CHHHHHHHHHHHHH--cCccEEEEecCCCChHHHHHh----
Confidence 4666642 2344556667777888888866521110 00000000000001 1367777654321 112222
Q ss_pred CCceEEEeCCCCC--cccccccChHHHHHHHHHHHHHH--hhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcE
Q 042576 114 PGIKTFRYDPYLG--KLFLEEYDNKGMRETRKRAIEKA--MKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDY 186 (313)
Q Consensus 114 p~~~~y~yDPys~--~~~~e~~d~~~~l~~R~~~I~ka--k~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~ 186 (313)
..+|++.+|.... .+.....|....- |. +.+.. + ..+++|+|.|..+......-.+-.++-++++|.+.
T Consensus 83 ~~iPvV~~~~~~~~~~~~~V~~d~~~~g--~~-a~~~L~~~-G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~ 155 (288)
T 2qu7_A 83 LKIPIMTLDRELESTSLPSITVDNEEAA--YI-ATKRVLES-TCKEVGLLLANPNISTTIGRKNGYNKAISEFDLNV 155 (288)
T ss_dssp GGSCEEEESCCCSSCCCCEEEECHHHHH--HH-HHHHHHTS-SCCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred cCCCEEEEecccCCCCCCEEEECcHHHH--HH-HHHHHHHc-CCCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 4678888875432 1222233433221 11 12222 3 56789999887543333344555667788888654
No 203
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=25.37 E-value=1.6e+02 Score=25.44 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=39.4
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC---cEEEEE-eCCCCHHHHhc----Cc-CCccEEEEecC
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGF---DYVVIM-MSEISPARVAL----FE-DSVDAWIQIAC 214 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gk---k~y~i~-v~einp~KLan----f~-~~ID~fV~iaC 214 (313)
++|||| -.+.-....++++-+++.++++|. ...+++ -++=++++... |. ..+|..|.++.
T Consensus 3 ~~Igvi-~~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~ 71 (295)
T 3lft_A 3 AKIGVL-QFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIAT 71 (295)
T ss_dssp EEEEEE-ECSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEESH
T ss_pred eEEEEE-EccCChhHHHHHHHHHHHHHHcCCCCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCc
Confidence 578887 556666677888889999999888 654443 34555554332 21 24888887654
No 204
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=24.89 E-value=98 Score=26.08 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=41.2
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCC-cEEEEEeCCCC-----HHHHhcCcCCccEEEEecCC
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGF-DYVVIMMSEIS-----PARVALFEDSVDAWIQIACP 215 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gk-k~y~i~v~ein-----p~KLanf~~~ID~fV~iaCP 215 (313)
-+||||+++.-..=.-.+++--.+.|+++|. ...++.|--.+ ..||+. .+|++|-++|.
T Consensus 18 ~ri~IV~arfn~~I~~~Ll~gA~~~l~~~G~~~i~v~~VPGafEiP~aak~la~---~yDavIaLG~V 82 (160)
T 2c92_A 18 VRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELAR---NHDAVVALGVV 82 (160)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHHHHTTCSCCEEEEESSGGGHHHHHHHHHT---SCSEEEEEEEE
T ss_pred CEEEEEEEeCcHHHHHHHHHHHHHHHHHcCCCceEEEECCcHHHHHHHHHHHHh---cCCEEEEEeee
Confidence 3699999986555445667777788888986 44555454332 255654 49999999998
No 205
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=24.75 E-value=98 Score=27.82 Aligned_cols=43 Identities=26% Similarity=0.200 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEec
Q 042576 169 PRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIA 213 (313)
Q Consensus 169 ~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~ia 213 (313)
....+.+++++++.| -.+++.|.++.+.+..+-...|++|+.+
T Consensus 296 ~~~~~~l~~~~~~~~--~~~~~~g~~~~~~~~~~~~~adv~v~ps 338 (439)
T 3fro_A 296 PELEGWARSLEEKHG--NVKVITEMLSREFVRELYGSVDFVIIPS 338 (439)
T ss_dssp HHHHHHHHHHHHHCT--TEEEECSCCCHHHHHHHHTTCSEEEECB
T ss_pred hhHHHHHHHHHhhcC--CEEEEcCCCCHHHHHHHHHHCCEEEeCC
Confidence 333445555555555 2334455566666554322578888665
No 206
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=24.51 E-value=1.3e+02 Score=23.93 Aligned_cols=51 Identities=22% Similarity=0.294 Sum_probs=34.0
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEecCC
Q 042576 155 TWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACP 215 (313)
Q Consensus 155 ~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~iaCP 215 (313)
++.|+-+|..+ +...+++.|.+.| |. +-++-+.+..+..|.. .|.+ +++||
T Consensus 3 k~~I~Y~S~tG-nT~~~A~~ia~~l---g~-~~~~~~~~~~~~~l~~----~d~i-i~g~p 53 (164)
T 2bmv_A 3 KIGIFFGTDSG-NAEAIAEKISKAI---GN-AEVVDVAKASKEQFNS----FTKV-ILVAP 53 (164)
T ss_dssp CEEEEECCSSS-HHHHHHHHHHHHH---CS-EEEEEGGGCCHHHHTT----CSEE-EEEEE
T ss_pred eEEEEEECCCc-hHHHHHHHHHHHc---CC-cEEEecccCCHhHHhh----CCEE-EEEEC
Confidence 46788888763 3556888888877 55 6667777777776654 4554 44455
No 207
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=24.38 E-value=3.4e+02 Score=23.27 Aligned_cols=153 Identities=11% Similarity=0.048 Sum_probs=73.0
Q ss_pred eEEEEec-c---ccHhHHHHHHHHHHhCCCeEEecCCCCCCCcc--ccCCCCCCCCCCCCCCeEEEecCCccc-HHHH-H
Q 042576 39 KLILAGT-I---QFASAIRAAKPELEKQGFKVMIPQSKPLSAGE--VLGCTAPKIPARESDFNLVFIADGRFH-LEAF-M 110 (313)
Q Consensus 39 ~i~Lv~t-i---Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~Ge--vLGCt~~~~~~~~~~d~iv~igdGrFH-le~~-m 110 (313)
+|+++.. . -|...++.+.+.+++.|+++++-....-...| .+- .+.. ..+|++|+.+...-. ...+ .
T Consensus 4 ~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~~~~~~~~~~~i~----~l~~-~~vdgiIi~~~~~~~~~~~~~~ 78 (306)
T 2vk2_A 4 TVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVR----SFVA-QGVDAIFIAPVVATGWEPVLKE 78 (306)
T ss_dssp EEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHH----HHHH-HTCSEEEECCSSSSSCHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHH----HHHH-cCCCEEEEeCCChhhHHHHHHH
Confidence 5665532 1 23445566888888889987652211000000 000 0000 137888876543211 1111 1
Q ss_pred hhCCCceEEEeCCCCCc------ccccccChHHHHH-HHHHHHHHHhhc-CCEEEEEEeCCCCCCcHHHHHHHHHHHHHc
Q 042576 111 ISNPGIKTFRYDPYLGK------LFLEEYDNKGMRE-TRKRAIEKAMKE-ARTWGIVLGTLGRQGNPRILERLQKRMEKK 182 (313)
Q Consensus 111 i~np~~~~y~yDPys~~------~~~e~~d~~~~l~-~R~~~I~kak~~-A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~ 182 (313)
+....+|++.+|-.... +.....|....-+ .=..++++-. . .+++|+|.|..+......-.+-.++-++++
T Consensus 79 ~~~~~iPvV~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~-g~~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~ 157 (306)
T 2vk2_A 79 AKDAEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVN-GKPCNVVELQGTVGASVAIDRKKGFAEAIKNA 157 (306)
T ss_dssp HHHTTCCEEEESSCCCCSCGGGSSEEEECCHHHHHHHHHHHHHHHHT-TSCEEEEEEECSTTCHHHHHHHHHHHHHTTTC
T ss_pred HHHCCCCEEEecCCCCCCCccceEEEEecCHHHHHHHHHHHHHHhcC-CCCCeEEEEEcCCCChhHHHHHHHHHHHHhhC
Confidence 33357888888854321 2223344332211 1123444442 2 578999988754333333444556667777
Q ss_pred CC-cEEEEEeCCCCHH
Q 042576 183 GF-DYVVIMMSEISPA 197 (313)
Q Consensus 183 Gk-k~y~i~v~einp~ 197 (313)
|. +...+..+..+.+
T Consensus 158 g~~~~~~~~~~~~~~~ 173 (306)
T 2vk2_A 158 PNIKIIRSQSGDFTRS 173 (306)
T ss_dssp TTEEEEEEEECTTCHH
T ss_pred CCeEEEEeccCCCcHH
Confidence 85 3222334565543
No 208
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=24.33 E-value=48 Score=28.58 Aligned_cols=86 Identities=20% Similarity=0.226 Sum_probs=51.2
Q ss_pred HHHhhcCCEEEEEEeC-CCCCCcHHHHHHHHHHHHHcCCcE---------------------------EEEEeCCCCHHH
Q 042576 147 EKAMKEARTWGIVLGT-LGRQGNPRILERLQKRMEKKGFDY---------------------------VVIMMSEISPAR 198 (313)
Q Consensus 147 ~kak~~A~~~GIIvgT-Lg~Q~~~~ii~~l~~ll~~~Gkk~---------------------------y~i~v~einp~K 198 (313)
+..+ +|+++-|+=|- +-...-...+..|-++|+++|+++ .++-|.|||+
T Consensus 18 ~~l~-~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhmNVLLAEA~VPYd~v~EMdeIN~-- 94 (180)
T 1pno_A 18 FIMK-NASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEEINS-- 94 (180)
T ss_dssp HHHH-TCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCTTSTTHHHHHHHHTTCCGGGEEEHHHHGG--
T ss_pred HHHH-hCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceEEEEeeCCCHHHHhhHHHHhh--
Confidence 3444 66666555441 222233445556666666666664 3778889997
Q ss_pred HhcCcCCccEEEEecCCCc----cc-ccc-CCCCCcccCHHHHHHH
Q 042576 199 VALFEDSVDAWIQIACPRL----SI-DWG-DAFTKPLLTPFEAEIA 238 (313)
Q Consensus 199 Lanf~~~ID~fV~iaCPrl----si-d~~-~~f~kPvLTPyE~~vA 238 (313)
.|+ +.|+-++|+--.. +. |.+ --+--|||..+++.-.
T Consensus 95 --df~-~tDv~lVIGANDvvNpaA~~dp~SpI~GMPvl~v~kAk~V 137 (180)
T 1pno_A 95 --SFQ-TADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVEKAGTV 137 (180)
T ss_dssp --GGG-GCSEEEEESCCGGGCGGGTTCTTSTTTTCCCCCGGGSSEE
T ss_pred --hhh-hcCEEEEeccccccCchhccCCCCCcCCCeeechhhCCEE
Confidence 598 7999988875442 22 222 2367888877665433
No 209
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=24.33 E-value=1.2e+02 Score=24.45 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=33.2
Q ss_pred cCChHHHH-HHHHHhCCCCCeEEEEec-------cccHhHHHHHHHHHHhCCCeEE
Q 042576 20 KIDVNRLI-DTIKVNYSDPGKLILAGT-------IQFASAIRAAKPELEKQGFKVM 67 (313)
Q Consensus 20 ~iD~~~~i-~~i~~~f~~~~~i~Lv~t-------iQf~~~l~~~~~~L~~~g~~v~ 67 (313)
+-++..++ +.+...--.+++++++++ -.|..++..+.+.|++.|.+++
T Consensus 66 p~~~~~fl~~~l~~~~l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~~ 121 (173)
T 2fcr_A 66 GTSWDEFLYDKLPEVDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPV 121 (173)
T ss_dssp CSTHHHHHHHTGGGCCCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEE
T ss_pred cHHHHHHHHhhccccccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEE
Confidence 34556666 655432223567888876 2366889999999999998765
No 210
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=24.31 E-value=1.6e+02 Score=26.73 Aligned_cols=60 Identities=13% Similarity=0.099 Sum_probs=43.6
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHh-cCcCCccEEEEecCCC
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVA-LFEDSVDAWIQIACPR 216 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLa-nf~~~ID~fV~iaCPr 216 (313)
.++-|+-+|.. -+...+++.+.+.+.+.|.+.-++-+.+..+..+. .+. +.|++|+ ++|-
T Consensus 252 ~~i~i~y~S~~-GnT~~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~d~ii~-g~p~ 312 (398)
T 1ycg_A 252 AKAVIAYDTMW-LSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEIL-DARAVLV-GSPT 312 (398)
T ss_dssp SEEEEEECCSS-SHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHH-HCSEEEE-ECCC
T ss_pred CeEEEEEECCc-cHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH-HCCEEEE-ECCc
Confidence 57778887763 34567999999999999988888888888776653 344 4677655 4553
No 211
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=24.14 E-value=51 Score=28.52 Aligned_cols=84 Identities=21% Similarity=0.192 Sum_probs=49.4
Q ss_pred HHhhcCCEEEEEEeC-CCCCCcHHHHHHHHHHHHHcCCcE---------------------------EEEEeCCCCHHHH
Q 042576 148 KAMKEARTWGIVLGT-LGRQGNPRILERLQKRMEKKGFDY---------------------------VVIMMSEISPARV 199 (313)
Q Consensus 148 kak~~A~~~GIIvgT-Lg~Q~~~~ii~~l~~ll~~~Gkk~---------------------------y~i~v~einp~KL 199 (313)
..+ +|+++-|+=|- +-...-...+..|-++|+++|+++ .++-|.|||+
T Consensus 18 ~l~-~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMdeIN~--- 93 (184)
T 1d4o_A 18 MIR-EANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEINH--- 93 (184)
T ss_dssp HHH-HCSEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEEECTTCSSSTTHHHHHHHHHTCCGGGEEEHHHHGG---
T ss_pred HHH-hCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceEEEEEecCCHHHHHhHHHHhh---
Confidence 344 55666555441 222333445555666666666554 5788889997
Q ss_pred hcCcCCccEEEEecCCCc----cc-ccc-CCCCCcccCHHHHHH
Q 042576 200 ALFEDSVDAWIQIACPRL----SI-DWG-DAFTKPLLTPFEAEI 237 (313)
Q Consensus 200 anf~~~ID~fV~iaCPrl----si-d~~-~~f~kPvLTPyE~~v 237 (313)
.|+ +.|+-++|+---. +. |.+ --+--|||..+++.-
T Consensus 94 -df~-~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvl~v~kAk~ 135 (184)
T 1d4o_A 94 -DFP-DTDLVLVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQ 135 (184)
T ss_dssp -GGG-GCSEEEEESCSGGGCTHHHHCTTSTTTTCCCCCGGGSSC
T ss_pred -hhh-hcCEEEEecCCccCCCccccCCCCCccCCeeeehhhCCE
Confidence 598 7999888875431 12 222 236678887766543
No 212
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=24.09 E-value=29 Score=28.62 Aligned_cols=56 Identities=13% Similarity=0.224 Sum_probs=35.6
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEecCCC
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPR 216 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~iaCPr 216 (313)
+++.|+.+|..+ +...+++.|.+.|.. +..+-++-+.+..++.|.. .|.+ +++||=
T Consensus 1 ~kilI~Y~S~tG-nT~~iA~~ia~~l~~-~~~v~~~~~~~~~~~~l~~----~d~i-ilg~pt 56 (179)
T 1yob_A 1 AKIGLFFGSNTG-KTRKVAKSIKKRFDD-ETMSDALNVNRVSAEDFAQ----YQFL-ILGTPT 56 (179)
T ss_dssp CCEEEEECCSSS-HHHHHHHHHHTTSCT-TTBCCCEEGGGCCHHHHHT----CSEE-EEEEEC
T ss_pred CeEEEEEECCCc-HHHHHHHHHHHHhCC-CCceEEEEhhhCCHHHHhc----CCEE-EEEecc
Confidence 357899999753 345677777777754 4345566777777776654 4544 455553
No 213
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=23.04 E-value=1.5e+02 Score=28.74 Aligned_cols=58 Identities=10% Similarity=0.216 Sum_probs=46.1
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeC-CCCHHHHhcCcC-----Cc-cEEEEe
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMS-EISPARVALFED-----SV-DAWIQI 212 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~-einp~KLanf~~-----~I-D~fV~i 212 (313)
....+|||+|+ .-...+++.....|+.-|..+-+-++| .=+|++|..|.. .+ +++|.+
T Consensus 264 ~~~~V~Ii~gs---~SD~~~~~~a~~~l~~~gi~~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~ 328 (425)
T 2h31_A 264 SQCRVVVLMGS---TSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAV 328 (425)
T ss_dssp CCCEEEEEESC---GGGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred CCCeEEEEecC---cccHHHHHHHHHHHHHcCCceEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEE
Confidence 44689999988 678899999999999999998776665 678999988851 26 577643
No 214
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=22.87 E-value=67 Score=26.23 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=32.5
Q ss_pred CChHHHHHHHHHhCCCCCeEEEEec---c----ccHhHHHHHHHHHHhCCCeEE
Q 042576 21 IDVNRLIDTIKVNYSDPGKLILAGT---I----QFASAIRAAKPELEKQGFKVM 67 (313)
Q Consensus 21 iD~~~~i~~i~~~f~~~~~i~Lv~t---i----Qf~~~l~~~~~~L~~~g~~v~ 67 (313)
-++..+++.+...--.+++++++++ . .|..++..+++.|++.|.+++
T Consensus 63 ~~~~~f~~~l~~~~l~gk~vavfg~g~~~~~~~~f~~a~~~l~~~l~~~G~~~v 116 (175)
T 1ag9_A 63 CDWDDFFPTLEEIDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIV 116 (175)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHTTTTCEEC
T ss_pred HHHHHHHhhhhhcccCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEE
Confidence 3355677766542223577888876 2 246889999999998888754
No 215
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=22.64 E-value=1.1e+02 Score=26.47 Aligned_cols=61 Identities=15% Similarity=0.046 Sum_probs=35.2
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHH----hcCc-CCccEEEEecCC
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARV----ALFE-DSVDAWIQIACP 215 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KL----anf~-~~ID~fV~iaCP 215 (313)
.+||+|+.+.+-.....+++-+++.+++.|....+.. +.-++++. ..+. ..+|++|+.++.
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~~ 68 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIAD-GQQKQENQIKAVRSFVAQGVDAIFIAPVV 68 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEE-CTTCHHHHHHHHHHHHHHTCSEEEECCSS
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeC-CCCCHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4677777776555555677777777777776654432 33344332 2221 147777776554
No 216
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=22.31 E-value=2e+02 Score=25.59 Aligned_cols=56 Identities=13% Similarity=0.089 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeC
Q 042576 137 GMRETRKRAIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMS 192 (313)
Q Consensus 137 ~~l~~R~~~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~ 192 (313)
.++..|-.+-........++=.|.|+.|+.|--.+.-.|-..+.+.|+++.+|=.+
T Consensus 75 a~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D 130 (286)
T 3la6_A 75 AIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCD 130 (286)
T ss_dssp HHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEecc
Confidence 34455544433222022345578999999999999999999999999998887665
No 217
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=22.05 E-value=3.8e+02 Score=23.04 Aligned_cols=142 Identities=12% Similarity=0.106 Sum_probs=68.6
Q ss_pred CeEEEEec-c---ccHhHHHHHHHHHHhCCCeEEecCCCCCCCccccCCCCCCCCCCCCCCeEEEecCCc-ccHHHH-Hh
Q 042576 38 GKLILAGT-I---QFASAIRAAKPELEKQGFKVMIPQSKPLSAGEVLGCTAPKIPARESDFNLVFIADGR-FHLEAF-MI 111 (313)
Q Consensus 38 ~~i~Lv~t-i---Qf~~~l~~~~~~L~~~g~~v~ipq~~pls~GevLGCt~~~~~~~~~~d~iv~igdGr-FHle~~-mi 111 (313)
.+|+++.. + -|...++.+.+.+++.|+++++-....-...|. ..-...+. ..+|++|+.+... -....+ .+
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~-~~i~~~~~--~~vdgiIi~~~~~~~~~~~~~~~ 80 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYADDDIPNQL-SQIENMVT--KGVKVLVIASIDGTTLSDVLKQA 80 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHH-HHHHHHHH--HTCSEEEECCSSGGGGHHHHHHH
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeCCCCHHHHH-HHHHHHHH--cCCCEEEEEcCCchhHHHHHHHH
Confidence 45776642 2 355567778889999999976522110000000 00000000 1378988875432 111111 23
Q ss_pred hCCCceEEEeCCCCCc---cc-ccccChHHHHH-HHHHHHHHHh----hcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHc
Q 042576 112 SNPGIKTFRYDPYLGK---LF-LEEYDNKGMRE-TRKRAIEKAM----KEARTWGIVLGTLGRQGNPRILERLQKRMEKK 182 (313)
Q Consensus 112 ~np~~~~y~yDPys~~---~~-~e~~d~~~~l~-~R~~~I~kak----~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~ 182 (313)
...++|++.+|-.... .. ....|....-+ .=.++++... ...+++++|.|..+......-.+-.++-|+++
T Consensus 81 ~~~giPvV~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~~al~~~ 160 (330)
T 3uug_A 81 GEQGIKVIAYDRLIRNSGDVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAFFFYDGAMSVLKPY 160 (330)
T ss_dssp HHTTCEEEEESSCCCSCTTCCEEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCEEEECCCCCCCCceeEEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHHHHHHHHHHHHHhc
Confidence 3457899999854322 21 22234322211 1122334332 03448999988766544444445555566665
No 218
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=21.86 E-value=1e+02 Score=27.12 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=31.3
Q ss_pred cCCEEEEEEeCCCCCCcHHHHHHHHHHHHHc-CCcEEEEEeCCCCHHH----HhcC-cCCccEEEEecC
Q 042576 152 EARTWGIVLGTLGRQGNPRILERLQKRMEKK-GFDYVVIMMSEISPAR----VALF-EDSVDAWIQIAC 214 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~-Gkk~y~i~v~einp~K----Lanf-~~~ID~fV~iaC 214 (313)
...+||+|+.+ .-..+..+++-+++.++++ |.+..+.. +.-++++ +..+ ...+|++|+.++
T Consensus 5 ~~~~Igvi~~~-~~~~~~~~~~gi~~~a~~~~g~~l~i~~-~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 71 (325)
T 2x7x_A 5 PHFRIGVAQCS-DDSWRHKMNDEILREAMFYNGVSVEIRS-AGDDNSKQAEDVHYFMDEGVDLLIISAN 71 (325)
T ss_dssp -CCEEEEEESC-CSHHHHHHHHHHHHHHTTSSSCEEEEEE-CTTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCeEEEEEecC-CCHHHHHHHHHHHHHHHHcCCcEEEEeC-CCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45677777766 3333445666666666666 66544332 3334332 1222 114777766654
No 219
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=21.64 E-value=1.2e+02 Score=26.50 Aligned_cols=60 Identities=8% Similarity=-0.034 Sum_probs=43.4
Q ss_pred cCCEEEEEEeCCCC-----CCcHHHHHHHHHHHHHcCCcEEEEEeCC-CCHHHH-hcCcCCccEEEEe
Q 042576 152 EARTWGIVLGTLGR-----QGNPRILERLQKRMEKKGFDYVVIMMSE-ISPARV-ALFEDSVDAWIQI 212 (313)
Q Consensus 152 ~A~~~GIIvgTLg~-----Q~~~~ii~~l~~ll~~~Gkk~y~i~v~e-inp~KL-anf~~~ID~fV~i 212 (313)
+-.++-||.|+.-. ..+..+++.+.+.+++.|.++.++-+.+ +..+++ +.+. +.|++|..
T Consensus 24 ~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~-~aD~iv~~ 90 (218)
T 3rpe_A 24 AMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYL-WADTIIYQ 90 (218)
T ss_dssp CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHH-HCSEEEEE
T ss_pred cCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHH-hCCEEEEE
Confidence 34578899999843 3456789999999999999999999874 444433 3555 57777654
No 220
>1xov_A PLY protein, plypsa; alpha/beta hydrolase, multi-domain, hydrolase; 1.80A {Listeria phage psa} SCOP: b.34.11.4 c.56.5.6
Probab=21.59 E-value=1.2e+02 Score=28.37 Aligned_cols=7 Identities=29% Similarity=0.544 Sum_probs=3.6
Q ss_pred ccEEEEe
Q 042576 206 VDAWIQI 212 (313)
Q Consensus 206 ID~fV~i 212 (313)
.|+||-|
T Consensus 84 ADlfISI 90 (326)
T 1xov_A 84 ADVHISV 90 (326)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 4555544
No 221
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=21.23 E-value=1.1e+02 Score=29.28 Aligned_cols=69 Identities=12% Similarity=0.074 Sum_probs=48.1
Q ss_pred CEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhcCcCCccEEEEecCCCcc---ccccCCCCCccc
Q 042576 154 RTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSEISPARVALFEDSVDAWIQIACPRLS---IDWGDAFTKPLL 230 (313)
Q Consensus 154 ~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~einp~KLanf~~~ID~fV~iaCPrls---id~~~~f~kPvL 230 (313)
+.+-|| |.+ ....++.|+++|++.|.++..+.-+. +.+.|.+.+ +-++-+++ ||... -.. +.|-.|.+
T Consensus 184 ~~VNil-G~~----~~~~~~eik~lL~~~Gi~v~~~~~~~-~~~ei~~~~-~A~~niv~-~~~~~~~A~~L-e~~GiP~i 254 (437)
T 3aek_A 184 AELIVV-GAL----PDVVEDQCLSLLTQLGVGPVRMLPAR-RSDIEPAVG-PNTRFILA-QPFLGETTGAL-ERRGAKRI 254 (437)
T ss_dssp CCEEEE-SCC----CHHHHHHHHHHHHHTTCCCEEEESCS-SGGGCCCBC-TTCEEEES-STTCHHHHHHH-HHTTCEEC
T ss_pred CcEEEE-eCC----ChhHHHHHHHHHHHcCCceEEEcCCC-CHHHHHhhh-cCcEEEEE-CccHHHHHHHH-HHcCCCeE
Confidence 455444 444 45666899999999999999888877 899998888 55555544 88752 123 56666644
Q ss_pred C
Q 042576 231 T 231 (313)
Q Consensus 231 T 231 (313)
.
T Consensus 255 ~ 255 (437)
T 3aek_A 255 A 255 (437)
T ss_dssp C
T ss_pred e
Confidence 3
No 222
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=20.99 E-value=60 Score=28.53 Aligned_cols=87 Identities=20% Similarity=0.249 Sum_probs=55.4
Q ss_pred HHHHhhcCCEEEEEEeC-CCCCCcHHHHHHHHHHHHHcCCcE---------------------------EEEEeCCCCHH
Q 042576 146 IEKAMKEARTWGIVLGT-LGRQGNPRILERLQKRMEKKGFDY---------------------------VVIMMSEISPA 197 (313)
Q Consensus 146 I~kak~~A~~~GIIvgT-Lg~Q~~~~ii~~l~~ll~~~Gkk~---------------------------y~i~v~einp~ 197 (313)
.+..+ +|+++-|+=|- +-...-...+..|-++|+++|+++ .++-|.|||+
T Consensus 40 a~~l~-~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMdeIN~- 117 (203)
T 2fsv_C 40 AFIMK-NASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEEINS- 117 (203)
T ss_dssp HHHHH-HCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCSSSTTHHHHHHHHTTCCGGGEEEHHHHGG-
T ss_pred HHHHH-hCCcEEEEcCchHhHHHHHHHHHHHHHHHHHcCCeEEEEecccccCCCCCccEEEEEecCCHHHHhhHHHHhh-
Confidence 34455 77777666542 222333455667777777777775 3678889997
Q ss_pred HHhcCcCCccEEEEecCCCc----cc-ccc-CCCCCcccCHHHHHHH
Q 042576 198 RVALFEDSVDAWIQIACPRL----SI-DWG-DAFTKPLLTPFEAEIA 238 (313)
Q Consensus 198 KLanf~~~ID~fV~iaCPrl----si-d~~-~~f~kPvLTPyE~~vA 238 (313)
.|+ +.|+-++|+--.. +. |.+ --+--|||..+++.-.
T Consensus 118 ---df~-~tDv~lVIGANDvVNPaA~~dp~SpI~GMPvL~v~kAk~V 160 (203)
T 2fsv_C 118 ---SFQ-TADVAFVIGANDVTNPAAKTDPSSPIYGMPILDVWKAGTV 160 (203)
T ss_dssp ---GST-TCSEEEEESCCGGGCGGGTSCTTSTTTTCCCCCGGGSSEE
T ss_pred ---hhh-hcCEEEEeccccccCchhhcCCCCCcCCCeeeccccCCEE
Confidence 599 8999998875442 22 222 2367888877665533
No 223
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=20.91 E-value=1.6e+02 Score=26.70 Aligned_cols=44 Identities=11% Similarity=0.109 Sum_probs=35.6
Q ss_pred cCCEEEEEEeCCCCCCc-HHHHHHHHHHHHHcCCcEEEEEeCCCC
Q 042576 152 EARTWGIVLGTLGRQGN-PRILERLQKRMEKKGFDYVVIMMSEIS 195 (313)
Q Consensus 152 ~A~~~GIIvgTLg~Q~~-~~ii~~l~~ll~~~Gkk~y~i~v~ein 195 (313)
...+|.+|.|+.-..++ ..+++.+.+.+++.|.++-++-+.++.
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlp 101 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLP 101 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCC
T ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCC
Confidence 44679999999875554 468888999999999999888888865
No 224
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=20.82 E-value=2.8e+02 Score=22.17 Aligned_cols=68 Identities=19% Similarity=0.164 Sum_probs=46.9
Q ss_pred HHHHHhhcCCEEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEE-eCCCCHHHHhcCcCCccEEEEecCCCcc
Q 042576 145 AIEKAMKEARTWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIM-MSEISPARVALFEDSVDAWIQIACPRLS 218 (313)
Q Consensus 145 ~I~kak~~A~~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~-v~einp~KLanf~~~ID~fV~iaCPrls 218 (313)
+++... +|+++ +++|. .++..+...+...|...|+.++.+. -+......+.++. +=|++|.++-...+
T Consensus 32 ~~~~i~-~a~~I-~i~G~---G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-~~d~~i~iS~sG~t 100 (187)
T 3sho_A 32 AVEAIC-RADHV-IVVGM---GFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLR-PTDLMIGVSVWRYL 100 (187)
T ss_dssp HHHHHH-HCSEE-EEECC---GGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCC-TTEEEEEECCSSCC
T ss_pred HHHHHH-hCCEE-EEEec---CchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCC-CCCEEEEEeCCCCC
Confidence 344445 67766 55655 3466788899999999999988776 2333334566776 56899998887654
No 225
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=20.68 E-value=1.8e+02 Score=22.24 Aligned_cols=45 Identities=18% Similarity=0.253 Sum_probs=33.4
Q ss_pred ChHHHHHHHHHhCCCCCeEEEEeccc--cHhHHHHHHHHHHhCCCeEE
Q 042576 22 DVNRLIDTIKVNYSDPGKLILAGTIQ--FASAIRAAKPELEKQGFKVM 67 (313)
Q Consensus 22 D~~~~i~~i~~~f~~~~~i~Lv~tiQ--f~~~l~~~~~~L~~~g~~v~ 67 (313)
.+..+++.+...+ .++++++++|-- |..++..+.+.|++.|.+++
T Consensus 65 ~~~~fl~~l~~~l-~~k~~~~f~t~g~~~~~a~~~l~~~l~~~G~~~v 111 (138)
T 5nul_A 65 EFEPFIEEISTKI-SGKKVALFGSYGWGDGKWMRDFEERMNGYGCVVV 111 (138)
T ss_dssp THHHHHHHHGGGC-TTCEEEEEEEESSSCSHHHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHHhhc-CCCEEEEEEecCCCCChHHHHHHHHHHHCCCEEE
Confidence 4678888887653 467788887643 35678899999999988765
No 226
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=20.66 E-value=1.5e+02 Score=22.83 Aligned_cols=48 Identities=21% Similarity=0.276 Sum_probs=33.7
Q ss_pred cCChHHHHHHHHHhCCCCCeEEEEecc-----ccHhHHHHHHHHHHhCCCeEE
Q 042576 20 KIDVNRLIDTIKVNYSDPGKLILAGTI-----QFASAIRAAKPELEKQGFKVM 67 (313)
Q Consensus 20 ~iD~~~~i~~i~~~f~~~~~i~Lv~ti-----Qf~~~l~~~~~~L~~~g~~v~ 67 (313)
+-.+..+++.+...--.++++++++|= .|..++..+++.|+..|.+++
T Consensus 67 p~~~~~fl~~l~~~~l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~~~ 119 (147)
T 1f4p_A 67 QDDFIPLFDSLEETGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIV 119 (147)
T ss_dssp CTTTHHHHHTGGGSCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEEC
T ss_pred ChhHHHHHHHHHhcccCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCeEh
Confidence 445667777765422235678888762 378889999999998888754
No 227
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=20.64 E-value=2.5e+02 Score=25.04 Aligned_cols=45 Identities=9% Similarity=0.045 Sum_probs=35.8
Q ss_pred EEEEEEeCCCCCCcHHHHHHHHHHHHHcCCcEEEEEeCC--CCHHHH
Q 042576 155 TWGIVLGTLGRQGNPRILERLQKRMEKKGFDYVVIMMSE--ISPARV 199 (313)
Q Consensus 155 ~~GIIvgTLg~Q~~~~ii~~l~~ll~~~Gkk~y~i~v~e--inp~KL 199 (313)
++=.|.|+.|+.|--.+.-.|-..|.+.|+++.+|=.+- .+..++
T Consensus 105 kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~ 151 (299)
T 3cio_A 105 NILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNL 151 (299)
T ss_dssp CEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHH
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHH
Confidence 455678999999999999999999999999988776653 444443
No 228
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=20.47 E-value=1.5e+02 Score=25.40 Aligned_cols=47 Identities=23% Similarity=0.208 Sum_probs=30.3
Q ss_pred CChHHHHHHHHHhCCCCCeEEEEeccc----cHhHHHHHHHHHHhCCCeEEe
Q 042576 21 IDVNRLIDTIKVNYSDPGKLILAGTIQ----FASAIRAAKPELEKQGFKVMI 68 (313)
Q Consensus 21 iD~~~~i~~i~~~f~~~~~i~Lv~tiQ----f~~~l~~~~~~L~~~g~~v~i 68 (313)
-+...++..+..... ..+|+++.|.. +...++.+++.|+..|.++.+
T Consensus 12 ~~~~~~~~~f~~~~~-~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~ 62 (206)
T 3l4e_A 12 KDVVPLFTEFESNLQ-GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEE 62 (206)
T ss_dssp GGCHHHHHHHSCCCT-TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEE
T ss_pred cchHHHHHHHHHHcC-CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 344444444432232 47899987543 345778889999999998654
No 229
>2xsa_A Ogoga, hyaluronoglucosaminidase; O-GLCNACYLATION, O-GLCNACASE, glycosyl hydrolase, hydrolase; 2.00A {Oceanicola granulosus} PDB: 2xsb_A*
Probab=20.15 E-value=6.1e+02 Score=24.70 Aligned_cols=81 Identities=20% Similarity=0.388 Sum_probs=56.4
Q ss_pred CceEEEe----CCCCCcccccccChHHHHHHHHHHHHHHhhcCC-EEEEEEeC-CCCC-CcHHHHHHHHHHHH---HcCC
Q 042576 115 GIKTFRY----DPYLGKLFLEEYDNKGMRETRKRAIEKAMKEAR-TWGIVLGT-LGRQ-GNPRILERLQKRME---KKGF 184 (313)
Q Consensus 115 ~~~~y~y----DPys~~~~~e~~d~~~~l~~R~~~I~kak~~A~-~~GIIvgT-Lg~Q-~~~~ii~~l~~ll~---~~Gk 184 (313)
....|.| |||-+.-.+|.|..+++-+. ..+|+.|+ +.+ .|+.=++. +... .+.+-++.|+++++ +.|.
T Consensus 30 kmNtYiYAPKDDpyhr~~WRe~Yp~eel~~l-~eLv~~a~-~~~V~Fv~aisPG~di~~s~~~d~~~L~~K~~ql~~lGV 107 (447)
T 2xsa_A 30 GMNTYIYGPKDDVHVRARWRVPYDAAGLARL-TELRDAAA-ARGMVFYVSLAPCLDVTYSDPQDRAALLARVDQLARAGL 107 (447)
T ss_dssp TCCEEEECCTTCTTTTTTTTSCCCHHHHHHH-HHHHHHHH-TTTCEEEEEECCCSSCCTTCHHHHHHHHHHHHHHHHTTC
T ss_pred CCceEEEccCCChHHHHhhcccCCHHHHHHH-HHHHHHHH-HcCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHHHHhCC
Confidence 5678888 67888888899987776544 45888898 655 46666655 4433 24455555555544 5799
Q ss_pred cEEEEEeCCCCHH
Q 042576 185 DYVVIMMSEISPA 197 (313)
Q Consensus 185 k~y~i~v~einp~ 197 (313)
+.+-|+.+.|...
T Consensus 108 r~FaIlfDDI~~~ 120 (447)
T 2xsa_A 108 RNLVLLFDDIPSV 120 (447)
T ss_dssp CEEEEECSSCCSS
T ss_pred CEEEEeccCCCCc
Confidence 9999999988753
Done!