Query 042580
Match_columns 241
No_of_seqs 131 out of 1427
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 07:33:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042580.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042580hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 99.9 1.6E-26 3.5E-31 218.7 18.2 219 1-238 1-237 (889)
2 PF00931 NB-ARC: NB-ARC domain 99.5 3.2E-14 6.9E-19 120.1 9.0 75 165-239 1-77 (287)
3 PLN03210 Resistant to P. syrin 99.2 1.4E-10 3E-15 114.9 11.5 60 159-220 183-242 (1153)
4 cd01128 rho_factor Transcripti 98.6 1.2E-07 2.5E-12 78.5 6.4 49 183-232 16-68 (249)
5 PRK09376 rho transcription ter 98.5 7.9E-08 1.7E-12 83.5 4.7 50 183-233 169-222 (416)
6 PTZ00202 tuzin; Provisional 98.4 1.5E-05 3.2E-10 70.4 15.9 76 157-238 259-335 (550)
7 PF13191 AAA_16: AAA ATPase do 98.4 6.6E-07 1.4E-11 70.2 6.0 49 162-210 2-51 (185)
8 PRK00411 cdc6 cell division co 98.3 3.1E-06 6.7E-11 74.8 9.3 80 159-238 29-112 (394)
9 TIGR02928 orc1/cdc6 family rep 98.3 2.9E-06 6.3E-11 74.2 8.5 78 160-237 15-100 (365)
10 PRK08118 topology modulation p 98.2 2.2E-06 4.9E-11 66.7 4.9 36 185-220 3-39 (167)
11 TIGR00767 rho transcription te 98.2 2.8E-06 6E-11 74.3 5.6 51 183-234 168-222 (415)
12 PF01637 Arch_ATPase: Archaeal 98.0 6E-06 1.3E-10 67.0 4.0 44 162-207 1-44 (234)
13 TIGR03015 pepcterm_ATPase puta 98.0 5.4E-05 1.2E-09 63.2 9.1 55 182-238 42-97 (269)
14 PRK11331 5-methylcytosine-spec 97.9 2.6E-05 5.6E-10 69.3 6.8 66 160-229 175-242 (459)
15 PRK07261 topology modulation p 97.9 3.5E-05 7.7E-10 60.2 6.2 49 185-233 2-53 (171)
16 PF13207 AAA_17: AAA domain; P 97.8 1.3E-05 2.8E-10 58.6 3.0 22 185-206 1-22 (121)
17 PF05496 RuvB_N: Holliday junc 97.8 3.3E-05 7.2E-10 62.4 5.4 52 160-213 24-78 (233)
18 PF13401 AAA_22: AAA domain; P 97.8 2.3E-05 4.9E-10 58.0 4.2 58 182-239 3-65 (131)
19 cd00009 AAA The AAA+ (ATPases 97.8 3.7E-05 8E-10 57.2 5.2 42 164-207 2-43 (151)
20 smart00763 AAA_PrkA PrkA AAA d 97.7 5.9E-05 1.3E-09 65.3 5.5 49 159-207 50-102 (361)
21 PRK06696 uridine kinase; Valid 97.7 7.2E-05 1.6E-09 61.0 5.5 42 165-206 3-45 (223)
22 TIGR00635 ruvB Holliday juncti 97.7 3.8E-05 8.2E-10 65.5 3.9 48 160-207 4-54 (305)
23 KOG2004 Mitochondrial ATP-depe 97.6 0.001 2.2E-08 61.8 12.4 52 160-213 411-466 (906)
24 PRK07667 uridine kinase; Provi 97.6 8.3E-05 1.8E-09 59.3 4.9 38 169-206 3-40 (193)
25 KOG2543 Origin recognition com 97.6 0.00028 6E-09 61.0 7.7 74 159-237 5-81 (438)
26 PRK00080 ruvB Holliday junctio 97.6 9E-05 1.9E-09 64.0 4.7 48 160-207 25-75 (328)
27 PF12061 DUF3542: Protein of u 97.5 0.00017 3.7E-09 60.5 5.7 102 4-121 297-401 (402)
28 TIGR02903 spore_lon_C ATP-depe 97.5 0.004 8.6E-08 58.3 15.3 50 161-212 155-204 (615)
29 PRK13342 recombination factor 97.5 0.00016 3.4E-09 64.5 5.1 44 161-206 13-59 (413)
30 PRK05480 uridine/cytidine kina 97.4 0.00014 2.9E-09 58.7 3.7 27 181-207 4-30 (209)
31 PF13238 AAA_18: AAA domain; P 97.4 0.00011 2.5E-09 53.8 3.0 21 186-206 1-21 (129)
32 PRK15455 PrkA family serine pr 97.4 0.00021 4.5E-09 65.3 5.1 46 161-206 77-126 (644)
33 COG0466 Lon ATP-dependent Lon 97.4 0.0002 4.4E-09 66.3 5.0 51 161-213 324-378 (782)
34 KOG2028 ATPase related to the 97.4 0.00031 6.7E-09 60.5 5.5 50 181-230 160-211 (554)
35 PF05729 NACHT: NACHT domain 97.4 0.00016 3.6E-09 55.3 3.5 37 184-220 1-41 (166)
36 TIGR00235 udk uridine kinase. 97.4 0.00017 3.7E-09 58.1 3.7 26 181-206 4-29 (207)
37 PRK05564 DNA polymerase III su 97.4 0.0012 2.6E-08 56.6 9.0 75 160-236 4-85 (313)
38 PRK08233 hypothetical protein; 97.4 0.00017 3.7E-09 56.5 3.5 25 183-207 3-27 (182)
39 COG1618 Predicted nucleotide k 97.3 0.00021 4.7E-09 54.5 3.5 25 183-207 5-29 (179)
40 COG1474 CDC6 Cdc6-related prot 97.3 0.0014 3.1E-08 57.4 9.1 76 161-237 18-98 (366)
41 PRK09270 nucleoside triphospha 97.3 0.00044 9.5E-09 56.6 5.5 27 180-206 30-56 (229)
42 PRK06762 hypothetical protein; 97.3 0.00022 4.8E-09 55.1 3.5 24 183-206 2-25 (166)
43 TIGR03420 DnaA_homol_Hda DnaA 97.3 0.00056 1.2E-08 55.5 6.0 40 165-206 22-61 (226)
44 PRK04195 replication factor C 97.3 0.00033 7.2E-09 63.7 4.6 46 161-206 15-62 (482)
45 PF13671 AAA_33: AAA domain; P 97.3 0.00026 5.6E-09 53.1 3.2 22 185-206 1-22 (143)
46 PRK06547 hypothetical protein; 97.2 0.00051 1.1E-08 53.7 4.9 26 181-206 13-38 (172)
47 PRK12402 replication factor C 97.2 0.00044 9.5E-09 59.6 4.9 45 160-206 15-59 (337)
48 TIGR01242 26Sp45 26S proteasom 97.2 0.00041 8.8E-09 60.8 4.8 48 159-206 121-179 (364)
49 PTZ00301 uridine kinase; Provi 97.2 0.00029 6.2E-09 56.9 3.5 23 183-205 3-25 (210)
50 cd02019 NK Nucleoside/nucleoti 97.2 0.00027 5.8E-09 46.5 2.7 22 185-206 1-22 (69)
51 COG2255 RuvB Holliday junction 97.2 0.00049 1.1E-08 57.3 4.6 47 160-206 26-75 (332)
52 PRK05541 adenylylsulfate kinas 97.2 0.00041 8.9E-09 54.3 4.0 37 182-220 6-42 (176)
53 PHA02544 44 clamp loader, smal 97.2 0.00058 1.2E-08 58.5 5.2 46 160-206 21-66 (316)
54 CHL00095 clpC Clp protease ATP 97.2 0.00045 9.7E-09 66.8 4.9 45 160-206 179-223 (821)
55 TIGR02881 spore_V_K stage V sp 97.2 0.00051 1.1E-08 57.4 4.4 46 161-206 7-65 (261)
56 COG0572 Udk Uridine kinase [Nu 97.1 0.00045 9.7E-09 55.7 3.6 28 181-208 6-33 (218)
57 PRK14738 gmk guanylate kinase; 97.1 0.00044 9.4E-09 55.7 3.6 32 175-206 5-36 (206)
58 TIGR02237 recomb_radB DNA repa 97.1 0.0016 3.5E-08 52.3 6.8 50 179-230 8-58 (209)
59 PTZ00112 origin recognition co 97.1 0.0028 6E-08 60.8 9.0 78 160-237 755-842 (1164)
60 PRK00440 rfc replication facto 97.1 0.002 4.3E-08 55.0 7.6 44 161-206 18-61 (319)
61 PRK10751 molybdopterin-guanine 97.1 0.00056 1.2E-08 53.4 3.8 25 182-206 5-29 (173)
62 TIGR03345 VI_ClpV1 type VI sec 97.1 0.00068 1.5E-08 65.6 5.1 45 160-206 187-231 (852)
63 PRK13341 recombination factor 97.1 0.00068 1.5E-08 64.3 4.9 44 161-206 29-75 (725)
64 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00047 1E-08 54.2 3.3 24 182-205 2-25 (188)
65 PRK04040 adenylate kinase; Pro 97.1 0.00049 1.1E-08 54.6 3.3 25 183-207 2-26 (188)
66 PF13173 AAA_14: AAA domain 97.1 0.00047 1E-08 51.1 3.0 35 183-220 2-36 (128)
67 TIGR02639 ClpA ATP-dependent C 97.1 0.00077 1.7E-08 64.4 5.1 44 161-206 183-226 (731)
68 PLN03025 replication factor C 97.1 0.00083 1.8E-08 57.8 4.8 44 161-206 14-57 (319)
69 KOG1532 GTPase XAB1, interacts 97.1 0.0004 8.6E-09 57.5 2.6 27 181-207 17-43 (366)
70 smart00382 AAA ATPases associa 97.0 0.00051 1.1E-08 50.4 3.0 25 183-207 2-26 (148)
71 PF00158 Sigma54_activat: Sigm 97.0 0.0033 7.2E-08 49.0 7.6 70 162-233 1-71 (168)
72 TIGR00554 panK_bact pantothena 97.0 0.0011 2.4E-08 56.2 5.2 25 181-205 60-84 (290)
73 PRK03992 proteasome-activating 97.0 0.00082 1.8E-08 59.5 4.5 47 160-206 131-188 (389)
74 PF03205 MobB: Molybdopterin g 97.0 0.00064 1.4E-08 51.3 3.2 36 184-220 1-36 (140)
75 PRK14961 DNA polymerase III su 97.0 0.0013 2.9E-08 57.6 5.7 46 160-206 16-61 (363)
76 PF08477 Miro: Miro-like prote 97.0 0.00065 1.4E-08 49.2 3.1 24 186-209 2-25 (119)
77 PRK10865 protein disaggregatio 97.0 0.00098 2.1E-08 64.6 5.0 45 160-206 178-222 (857)
78 cd02020 CMPK Cytidine monophos 97.0 0.00054 1.2E-08 51.5 2.5 22 185-206 1-22 (147)
79 TIGR00150 HI0065_YjeE ATPase, 96.9 0.0017 3.8E-08 48.4 5.0 41 167-207 6-46 (133)
80 PF00004 AAA: ATPase family as 96.9 0.00069 1.5E-08 49.8 2.8 21 186-206 1-21 (132)
81 PRK05201 hslU ATP-dependent pr 96.9 0.003 6.4E-08 56.0 7.0 75 160-236 15-107 (443)
82 PRK05439 pantothenate kinase; 96.9 0.0018 3.9E-08 55.3 5.5 26 180-205 83-108 (311)
83 PRK14963 DNA polymerase III su 96.9 0.0013 2.8E-08 60.0 4.9 46 161-207 15-60 (504)
84 PRK13765 ATP-dependent proteas 96.9 0.0023 4.9E-08 59.9 6.5 74 160-238 31-105 (637)
85 PHA00729 NTP-binding motif con 96.9 0.0017 3.7E-08 52.8 5.0 24 183-206 17-40 (226)
86 PF05659 RPW8: Arabidopsis bro 96.9 0.022 4.7E-07 43.3 10.6 107 2-125 8-115 (147)
87 PRK00300 gmk guanylate kinase; 96.9 0.00081 1.8E-08 53.8 3.0 24 183-206 5-28 (205)
88 PRK08903 DnaA regulatory inact 96.9 0.0026 5.5E-08 51.9 6.0 43 163-206 22-65 (227)
89 cd01123 Rad51_DMC1_radA Rad51_ 96.9 0.0034 7.4E-08 51.3 6.7 51 179-229 15-71 (235)
90 cd01133 F1-ATPase_beta F1 ATP 96.9 0.0014 3.1E-08 54.8 4.5 50 183-234 69-122 (274)
91 COG1120 FepC ABC-type cobalami 96.9 0.0017 3.7E-08 53.8 4.8 25 182-206 27-51 (258)
92 PRK00131 aroK shikimate kinase 96.9 0.00096 2.1E-08 51.7 3.2 25 183-207 4-28 (175)
93 PLN02318 phosphoribulokinase/u 96.9 0.0016 3.4E-08 60.0 4.9 35 172-206 54-88 (656)
94 PRK00625 shikimate kinase; Pro 96.8 0.00086 1.9E-08 52.5 2.8 22 185-206 2-23 (173)
95 PF04665 Pox_A32: Poxvirus A32 96.8 0.0015 3.2E-08 53.7 4.3 36 183-220 13-48 (241)
96 COG2256 MGS1 ATPase related to 96.8 0.0014 3E-08 57.1 4.2 31 182-214 47-77 (436)
97 PRK04841 transcriptional regul 96.8 0.0036 7.8E-08 61.1 7.5 62 169-237 19-83 (903)
98 TIGR03346 chaperone_ClpB ATP-d 96.8 0.0016 3.5E-08 63.2 5.0 45 160-206 173-217 (852)
99 cd00071 GMPK Guanosine monopho 96.8 0.00097 2.1E-08 50.1 2.7 22 185-206 1-22 (137)
100 cd02021 GntK Gluconate kinase 96.8 0.00095 2.1E-08 50.6 2.7 23 185-207 1-23 (150)
101 PRK03846 adenylylsulfate kinas 96.8 0.0013 2.9E-08 52.5 3.7 26 181-206 22-47 (198)
102 PRK14962 DNA polymerase III su 96.8 0.0023 4.9E-08 58.0 5.4 46 160-206 14-59 (472)
103 PRK13975 thymidylate kinase; P 96.8 0.0013 2.7E-08 52.3 3.3 25 184-208 3-27 (196)
104 PRK10078 ribose 1,5-bisphospho 96.8 0.0012 2.5E-08 52.2 3.1 24 184-207 3-26 (186)
105 cd00227 CPT Chloramphenicol (C 96.8 0.0011 2.4E-08 51.8 3.0 23 184-206 3-25 (175)
106 TIGR00764 lon_rel lon-related 96.8 0.0042 9.1E-08 58.0 7.2 73 160-238 18-92 (608)
107 PRK00889 adenylylsulfate kinas 96.8 0.0015 3.2E-08 51.0 3.6 25 183-207 4-28 (175)
108 PRK14949 DNA polymerase III su 96.8 0.0063 1.4E-07 58.6 8.4 46 160-206 16-61 (944)
109 cd04139 RalA_RalB RalA/RalB su 96.7 0.0015 3.2E-08 49.8 3.3 23 185-207 2-24 (164)
110 PRK00771 signal recognition pa 96.7 0.0075 1.6E-07 54.0 8.2 53 182-236 94-149 (437)
111 TIGR00390 hslU ATP-dependent p 96.7 0.0063 1.4E-07 53.9 7.5 73 161-235 13-103 (441)
112 PF00005 ABC_tran: ABC transpo 96.7 0.0013 2.8E-08 49.0 2.9 23 184-206 12-34 (137)
113 PRK05896 DNA polymerase III su 96.7 0.0029 6.2E-08 58.6 5.5 46 160-206 16-61 (605)
114 PRK14957 DNA polymerase III su 96.7 0.0027 5.9E-08 58.3 5.3 45 160-205 16-60 (546)
115 PRK13949 shikimate kinase; Pro 96.7 0.0014 3E-08 51.1 3.0 22 185-206 3-24 (169)
116 TIGR00176 mobB molybdopterin-g 96.7 0.0013 2.8E-08 50.6 2.7 22 185-206 1-22 (155)
117 PF00910 RNA_helicase: RNA hel 96.7 0.0012 2.5E-08 47.4 2.2 21 186-206 1-21 (107)
118 cd00464 SK Shikimate kinase (S 96.7 0.0015 3.2E-08 49.6 2.9 34 186-220 2-35 (154)
119 PF03193 DUF258: Protein of un 96.7 0.003 6.5E-08 48.7 4.6 35 168-207 25-59 (161)
120 PRK10536 hypothetical protein; 96.7 0.0053 1.1E-07 50.9 6.3 57 158-218 53-109 (262)
121 PRK14960 DNA polymerase III su 96.7 0.0034 7.3E-08 58.6 5.7 46 160-206 15-60 (702)
122 COG0194 Gmk Guanylate kinase [ 96.7 0.0018 3.9E-08 50.8 3.3 25 183-207 4-28 (191)
123 COG1100 GTPase SAR1 and relate 96.6 0.0016 3.5E-08 52.4 3.2 25 184-208 6-30 (219)
124 COG1116 TauB ABC-type nitrate/ 96.6 0.0016 3.4E-08 53.4 3.0 23 183-205 29-51 (248)
125 PF01583 APS_kinase: Adenylyls 96.6 0.0022 4.7E-08 49.3 3.6 25 183-207 2-26 (156)
126 PLN02348 phosphoribulokinase 96.6 0.0041 8.9E-08 54.6 5.7 27 180-206 46-72 (395)
127 COG1126 GlnQ ABC-type polar am 96.6 0.0017 3.8E-08 52.1 3.1 27 182-208 27-53 (240)
128 PRK13947 shikimate kinase; Pro 96.6 0.0015 3.2E-08 50.7 2.8 22 185-206 3-24 (171)
129 TIGR00073 hypB hydrogenase acc 96.6 0.002 4.4E-08 51.8 3.5 26 181-206 20-45 (207)
130 cd00820 PEPCK_HprK Phosphoenol 96.6 0.002 4.3E-08 46.2 3.1 22 183-204 15-36 (107)
131 TIGR01313 therm_gnt_kin carboh 96.6 0.0013 2.8E-08 50.7 2.3 22 186-207 1-22 (163)
132 PRK14956 DNA polymerase III su 96.6 0.0033 7.1E-08 56.7 5.1 46 160-206 18-63 (484)
133 PF03308 ArgK: ArgK protein; 96.6 0.0038 8.3E-08 51.6 5.0 40 168-207 14-53 (266)
134 PF01926 MMR_HSR1: 50S ribosom 96.6 0.0019 4.1E-08 46.7 3.0 21 186-206 2-22 (116)
135 CHL00181 cbbX CbbX; Provisiona 96.6 0.0046 1E-07 52.4 5.7 46 161-206 24-82 (287)
136 PRK14737 gmk guanylate kinase; 96.6 0.0022 4.8E-08 50.8 3.5 25 182-206 3-27 (186)
137 PLN02796 D-glycerate 3-kinase 96.6 0.0022 4.7E-08 55.4 3.6 27 181-207 98-124 (347)
138 TIGR00763 lon ATP-dependent pr 96.6 0.0033 7.2E-08 60.5 5.3 46 161-206 321-370 (775)
139 TIGR00064 ftsY signal recognit 96.6 0.0092 2E-07 50.2 7.4 43 181-225 70-113 (272)
140 PRK06893 DNA replication initi 96.6 0.0022 4.8E-08 52.5 3.6 24 183-206 39-62 (229)
141 PRK14955 DNA polymerase III su 96.6 0.0035 7.7E-08 55.6 5.1 46 160-206 16-61 (397)
142 PRK11034 clpA ATP-dependent Cl 96.6 0.0029 6.3E-08 60.4 4.8 45 160-206 186-230 (758)
143 PRK14530 adenylate kinase; Pro 96.6 0.0019 4E-08 52.3 3.0 22 185-206 5-26 (215)
144 COG1763 MobB Molybdopterin-gua 96.6 0.0018 3.8E-08 50.0 2.7 24 183-206 2-25 (161)
145 cd02027 APSK Adenosine 5'-phos 96.6 0.0016 3.5E-08 49.6 2.5 23 185-207 1-23 (149)
146 COG1428 Deoxynucleoside kinase 96.6 0.0019 4E-08 51.7 2.9 26 183-208 4-29 (216)
147 PF03215 Rad17: Rad17 cell cyc 96.5 0.0041 8.8E-08 56.9 5.4 56 161-220 20-78 (519)
148 PF03266 NTPase_1: NTPase; In 96.5 0.002 4.3E-08 50.2 2.9 22 186-207 2-23 (168)
149 PRK07003 DNA polymerase III su 96.5 0.011 2.3E-07 56.1 8.1 46 160-206 16-61 (830)
150 COG1124 DppF ABC-type dipeptid 96.5 0.002 4.3E-08 52.6 3.0 23 183-205 33-55 (252)
151 smart00173 RAS Ras subfamily o 96.5 0.0025 5.3E-08 48.7 3.4 23 185-207 2-24 (164)
152 cd03116 MobB Molybdenum is an 96.5 0.0026 5.6E-08 49.1 3.4 23 184-206 2-24 (159)
153 PF07728 AAA_5: AAA domain (dy 96.5 0.0022 4.7E-08 48.0 2.9 21 186-206 2-22 (139)
154 cd04119 RJL RJL (RabJ-Like) su 96.5 0.0026 5.5E-08 48.6 3.4 22 186-207 3-24 (168)
155 PRK14722 flhF flagellar biosyn 96.5 0.0067 1.5E-07 53.2 6.3 41 183-223 137-178 (374)
156 PRK12339 2-phosphoglycerate ki 96.5 0.0026 5.6E-08 50.9 3.4 25 183-207 3-27 (197)
157 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.5 0.0023 4.9E-08 51.8 3.1 24 183-206 30-53 (218)
158 PRK09435 membrane ATPase/prote 96.5 0.0043 9.3E-08 53.6 4.9 38 169-206 42-79 (332)
159 PRK05057 aroK shikimate kinase 96.5 0.0023 4.9E-08 50.0 3.0 24 183-206 4-27 (172)
160 PF13521 AAA_28: AAA domain; P 96.5 0.0021 4.6E-08 49.5 2.8 21 186-206 2-22 (163)
161 PF07693 KAP_NTPase: KAP famil 96.5 0.0082 1.8E-07 51.5 6.7 72 166-237 2-81 (325)
162 cd03225 ABC_cobalt_CbiO_domain 96.5 0.0024 5.2E-08 51.4 3.1 24 183-206 27-50 (211)
163 PRK09361 radB DNA repair and r 96.5 0.011 2.3E-07 48.1 7.0 48 179-228 19-67 (225)
164 cd00879 Sar1 Sar1 subfamily. 96.5 0.0057 1.2E-07 48.1 5.2 36 170-206 7-42 (190)
165 PTZ00454 26S protease regulato 96.5 0.0043 9.4E-08 55.0 4.9 47 160-206 145-202 (398)
166 cd04159 Arl10_like Arl10-like 96.5 0.0025 5.4E-08 47.9 3.1 22 186-207 2-23 (159)
167 cd01862 Rab7 Rab7 subfamily. 96.5 0.0024 5.2E-08 49.1 3.0 22 185-206 2-23 (172)
168 cd04155 Arl3 Arl3 subfamily. 96.5 0.0023 4.9E-08 49.5 2.8 25 182-206 13-37 (173)
169 PF07726 AAA_3: ATPase family 96.5 0.0016 3.6E-08 48.1 1.8 27 186-214 2-28 (131)
170 PTZ00361 26 proteosome regulat 96.5 0.0042 9E-08 55.7 4.8 46 161-206 184-240 (438)
171 COG2019 AdkA Archaeal adenylat 96.5 0.0027 5.8E-08 48.9 3.0 24 183-206 4-27 (189)
172 PRK14527 adenylate kinase; Pro 96.5 0.0027 5.8E-08 50.4 3.2 25 182-206 5-29 (191)
173 TIGR00960 3a0501s02 Type II (G 96.4 0.0025 5.4E-08 51.5 3.1 24 183-206 29-52 (216)
174 CHL00081 chlI Mg-protoporyphyr 96.4 0.0037 7.9E-08 54.3 4.2 47 157-205 14-60 (350)
175 PRK10463 hydrogenase nickel in 96.4 0.0085 1.8E-07 50.6 6.3 26 181-206 102-127 (290)
176 TIGR03499 FlhF flagellar biosy 96.4 0.0027 5.8E-08 53.7 3.3 26 182-207 193-218 (282)
177 TIGR00750 lao LAO/AO transport 96.4 0.0044 9.4E-08 52.9 4.6 38 169-206 20-57 (300)
178 TIGR01166 cbiO cobalt transpor 96.4 0.0026 5.7E-08 50.3 3.1 24 183-206 18-41 (190)
179 cd03238 ABC_UvrA The excision 96.4 0.0026 5.7E-08 49.9 3.0 23 183-205 21-43 (176)
180 PRK08727 hypothetical protein; 96.4 0.008 1.7E-07 49.3 6.0 54 163-220 23-76 (233)
181 PRK06761 hypothetical protein; 96.4 0.0049 1.1E-07 51.9 4.8 25 183-207 3-27 (282)
182 TIGR02030 BchI-ChlI magnesium 96.4 0.0051 1.1E-07 53.3 5.0 44 160-205 4-47 (337)
183 PF01078 Mg_chelatase: Magnesi 96.4 0.0072 1.6E-07 48.4 5.5 42 160-205 3-44 (206)
184 cd04163 Era Era subfamily. Er 96.4 0.0034 7.4E-08 47.5 3.6 25 183-207 3-27 (168)
185 PRK00698 tmk thymidylate kinas 96.4 0.003 6.5E-08 50.3 3.4 24 183-206 3-26 (205)
186 cd04113 Rab4 Rab4 subfamily. 96.4 0.0028 6E-08 48.3 3.0 22 186-207 3-24 (161)
187 PRK13531 regulatory ATPase Rav 96.4 0.0056 1.2E-07 55.2 5.3 43 160-206 20-62 (498)
188 cd04138 H_N_K_Ras_like H-Ras/N 96.4 0.0032 6.9E-08 47.7 3.3 22 186-207 4-25 (162)
189 PRK14958 DNA polymerase III su 96.4 0.0052 1.1E-07 56.2 5.2 46 160-206 16-61 (509)
190 PRK12608 transcription termina 96.4 0.0074 1.6E-07 52.7 5.9 67 169-237 120-190 (380)
191 cd01120 RecA-like_NTPases RecA 96.4 0.0035 7.5E-08 47.5 3.5 34 185-220 1-34 (165)
192 cd03229 ABC_Class3 This class 96.4 0.0029 6.3E-08 49.6 3.2 24 183-206 26-49 (178)
193 PRK08084 DNA replication initi 96.4 0.0063 1.4E-07 50.0 5.2 24 183-206 45-68 (235)
194 cd00876 Ras Ras family. The R 96.4 0.0033 7.1E-08 47.5 3.3 21 186-206 2-22 (160)
195 cd03222 ABC_RNaseL_inhibitor T 96.4 0.003 6.4E-08 49.7 3.1 24 183-206 25-48 (177)
196 TIGR02902 spore_lonB ATP-depen 96.4 0.008 1.7E-07 55.4 6.3 44 161-206 66-109 (531)
197 PRK08356 hypothetical protein; 96.4 0.0028 6.2E-08 50.4 3.0 23 183-205 5-27 (195)
198 PRK10787 DNA-binding ATP-depen 96.4 0.0053 1.1E-07 59.0 5.3 47 160-206 322-372 (784)
199 TIGR00231 small_GTP small GTP- 96.4 0.003 6.4E-08 47.2 3.0 23 185-207 3-25 (161)
200 COG1136 SalX ABC-type antimicr 96.4 0.003 6.6E-08 51.3 3.1 23 183-205 31-53 (226)
201 TIGR02397 dnaX_nterm DNA polym 96.4 0.0069 1.5E-07 52.6 5.7 46 160-206 14-59 (355)
202 cd00154 Rab Rab family. Rab G 96.4 0.0031 6.7E-08 47.3 3.0 22 186-207 3-24 (159)
203 TIGR02236 recomb_radA DNA repa 96.4 0.016 3.4E-07 49.6 7.7 61 175-236 87-153 (310)
204 TIGR02315 ABC_phnC phosphonate 96.4 0.0029 6.4E-08 52.0 3.1 24 183-206 28-51 (243)
205 COG0237 CoaE Dephospho-CoA kin 96.4 0.0032 7E-08 50.5 3.2 24 183-206 2-25 (201)
206 cd03293 ABC_NrtD_SsuB_transpor 96.4 0.003 6.5E-08 51.2 3.1 24 183-206 30-53 (220)
207 PF10662 PduV-EutP: Ethanolami 96.4 0.0029 6.2E-08 47.8 2.7 24 184-207 2-25 (143)
208 cd03261 ABC_Org_Solvent_Resist 96.4 0.003 6.5E-08 51.8 3.1 24 183-206 26-49 (235)
209 PLN02200 adenylate kinase fami 96.4 0.0037 8E-08 51.4 3.6 26 181-206 41-66 (234)
210 cd03297 ABC_ModC_molybdenum_tr 96.4 0.0034 7.3E-08 50.7 3.4 25 181-206 22-46 (214)
211 cd03263 ABC_subfamily_A The AB 96.4 0.0031 6.6E-08 51.1 3.1 24 183-206 28-51 (220)
212 PRK09825 idnK D-gluconate kina 96.4 0.0033 7.2E-08 49.3 3.2 24 184-207 4-27 (176)
213 PRK13695 putative NTPase; Prov 96.4 0.0031 6.6E-08 49.2 3.0 22 185-206 2-23 (174)
214 cd03269 ABC_putative_ATPase Th 96.3 0.0032 6.9E-08 50.6 3.1 24 183-206 26-49 (210)
215 PF08298 AAA_PrkA: PrkA AAA do 96.3 0.0093 2E-07 51.5 6.0 49 158-206 59-111 (358)
216 TIGR02673 FtsE cell division A 96.3 0.0032 6.9E-08 50.8 3.1 24 183-206 28-51 (214)
217 COG1125 OpuBA ABC-type proline 96.3 0.0097 2.1E-07 49.1 5.8 23 183-205 27-49 (309)
218 cd01393 recA_like RecA is a b 96.3 0.014 2.9E-07 47.4 6.8 52 178-229 14-71 (226)
219 cd03256 ABC_PhnC_transporter A 96.3 0.0032 6.9E-08 51.7 3.1 24 183-206 27-50 (241)
220 PRK05537 bifunctional sulfate 96.3 0.0073 1.6E-07 56.0 5.7 49 159-207 368-416 (568)
221 cd03259 ABC_Carb_Solutes_like 96.3 0.0034 7.3E-08 50.6 3.1 24 183-206 26-49 (213)
222 cd03260 ABC_PstB_phosphate_tra 96.3 0.0034 7.4E-08 51.1 3.2 24 183-206 26-49 (227)
223 PRK12323 DNA polymerase III su 96.3 0.006 1.3E-07 56.9 5.0 46 160-206 16-61 (700)
224 TIGR03689 pup_AAA proteasome A 96.3 0.0052 1.1E-07 56.0 4.6 47 160-206 182-239 (512)
225 PRK11889 flhF flagellar biosyn 96.3 0.0033 7.1E-08 55.3 3.2 25 182-206 240-264 (436)
226 cd01130 VirB11-like_ATPase Typ 96.3 0.004 8.7E-08 49.2 3.5 35 168-205 13-47 (186)
227 PRK14974 cell division protein 96.3 0.012 2.6E-07 51.0 6.6 53 182-236 139-194 (336)
228 TIGR02173 cyt_kin_arch cytidyl 96.3 0.0037 8.1E-08 48.2 3.2 22 185-206 2-23 (171)
229 TIGR02880 cbbX_cfxQ probable R 96.3 0.0076 1.7E-07 51.0 5.3 45 161-205 23-80 (284)
230 COG1703 ArgK Putative periplas 96.3 0.0058 1.3E-07 51.4 4.4 61 169-229 37-99 (323)
231 smart00175 RAB Rab subfamily o 96.3 0.0035 7.6E-08 47.7 3.0 22 186-207 3-24 (164)
232 PRK13541 cytochrome c biogenes 96.3 0.0036 7.8E-08 49.8 3.1 24 183-206 26-49 (195)
233 TIGR00602 rad24 checkpoint pro 96.3 0.0063 1.4E-07 56.9 5.1 47 160-206 84-133 (637)
234 COG0467 RAD55 RecA-superfamily 96.3 0.013 2.9E-07 48.8 6.6 53 179-233 19-71 (260)
235 cd03235 ABC_Metallic_Cations A 96.3 0.0034 7.4E-08 50.6 3.0 24 183-206 25-48 (213)
236 PRK10584 putative ABC transpor 96.3 0.0036 7.8E-08 51.0 3.2 24 183-206 36-59 (228)
237 cd01876 YihA_EngB The YihA (En 96.3 0.0031 6.8E-08 47.9 2.6 20 186-205 2-21 (170)
238 PF00071 Ras: Ras family; Int 96.3 0.0043 9.2E-08 47.3 3.4 22 186-207 2-23 (162)
239 cd03226 ABC_cobalt_CbiO_domain 96.3 0.0036 7.8E-08 50.2 3.1 24 183-206 26-49 (205)
240 PRK10416 signal recognition pa 96.3 0.0039 8.4E-08 53.6 3.4 26 182-207 113-138 (318)
241 cd03292 ABC_FtsE_transporter F 96.3 0.0037 7.9E-08 50.4 3.1 24 183-206 27-50 (214)
242 PRK06620 hypothetical protein; 96.3 0.0037 8E-08 50.7 3.1 24 184-207 45-68 (214)
243 TIGR03864 PQQ_ABC_ATP ABC tran 96.3 0.0036 7.9E-08 51.3 3.2 24 183-206 27-50 (236)
244 TIGR02211 LolD_lipo_ex lipopro 96.3 0.0037 8E-08 50.6 3.1 24 183-206 31-54 (221)
245 cd03265 ABC_DrrA DrrA is the A 96.3 0.0037 8E-08 50.7 3.2 24 183-206 26-49 (220)
246 PRK06995 flhF flagellar biosyn 96.3 0.01 2.2E-07 53.8 6.2 43 183-225 256-299 (484)
247 cd03296 ABC_CysA_sulfate_impor 96.3 0.0036 7.8E-08 51.4 3.1 24 183-206 28-51 (239)
248 TIGR00041 DTMP_kinase thymidyl 96.3 0.0041 8.9E-08 49.3 3.3 26 184-209 4-29 (195)
249 cd03264 ABC_drug_resistance_li 96.3 0.0033 7.2E-08 50.6 2.8 22 185-206 27-48 (211)
250 PRK04301 radA DNA repair and r 96.2 0.017 3.8E-07 49.6 7.4 56 175-230 94-155 (317)
251 cd03224 ABC_TM1139_LivF_branch 96.2 0.0039 8.5E-08 50.5 3.2 24 183-206 26-49 (222)
252 TIGR01425 SRP54_euk signal rec 96.2 0.015 3.2E-07 52.0 6.9 25 182-206 99-123 (429)
253 PRK09087 hypothetical protein; 96.2 0.004 8.6E-08 50.9 3.1 24 183-206 44-67 (226)
254 PRK13946 shikimate kinase; Pro 96.2 0.0038 8.2E-08 49.3 2.9 24 183-206 10-33 (184)
255 PRK08099 bifunctional DNA-bind 96.2 0.0035 7.6E-08 55.6 3.0 26 181-206 217-242 (399)
256 PRK08691 DNA polymerase III su 96.2 0.0069 1.5E-07 56.9 5.0 46 160-206 16-61 (709)
257 PRK14951 DNA polymerase III su 96.2 0.0079 1.7E-07 56.1 5.3 45 160-205 16-60 (618)
258 PRK12726 flagellar biosynthesi 96.2 0.012 2.6E-07 51.6 6.1 54 181-236 204-260 (407)
259 cd03257 ABC_NikE_OppD_transpor 96.2 0.004 8.6E-08 50.6 3.1 24 183-206 31-54 (228)
260 PRK14964 DNA polymerase III su 96.2 0.0065 1.4E-07 55.1 4.7 45 160-205 13-57 (491)
261 PRK06645 DNA polymerase III su 96.2 0.0075 1.6E-07 55.1 5.0 46 160-206 21-66 (507)
262 PLN03046 D-glycerate 3-kinase; 96.2 0.0053 1.1E-07 54.4 3.9 26 181-206 210-235 (460)
263 TIGR03608 L_ocin_972_ABC putat 96.2 0.0043 9.3E-08 49.7 3.1 24 183-206 24-47 (206)
264 cd04160 Arfrp1 Arfrp1 subfamil 96.2 0.0039 8.4E-08 47.8 2.8 20 186-205 2-21 (167)
265 PRK11248 tauB taurine transpor 96.2 0.0041 8.9E-08 51.7 3.1 24 183-206 27-50 (255)
266 cd01878 HflX HflX subfamily. 96.2 0.0044 9.5E-08 49.4 3.2 26 182-207 40-65 (204)
267 cd03258 ABC_MetN_methionine_tr 96.2 0.0042 9.1E-08 50.8 3.1 24 183-206 31-54 (233)
268 COG1223 Predicted ATPase (AAA+ 96.2 0.0086 1.9E-07 49.6 4.8 50 159-208 120-176 (368)
269 PRK11629 lolD lipoprotein tran 96.2 0.0042 9.2E-08 50.8 3.1 24 183-206 35-58 (233)
270 PRK13538 cytochrome c biogenes 96.2 0.0043 9.3E-08 49.7 3.1 24 183-206 27-50 (204)
271 cd01864 Rab19 Rab19 subfamily. 96.2 0.0049 1.1E-07 47.2 3.3 24 183-206 3-26 (165)
272 cd04136 Rap_like Rap-like subf 96.2 0.0049 1.1E-07 46.9 3.3 22 185-206 3-24 (163)
273 PRK14969 DNA polymerase III su 96.2 0.0084 1.8E-07 55.2 5.4 46 160-206 16-61 (527)
274 COG4608 AppF ABC-type oligopep 96.2 0.0039 8.4E-08 51.8 2.8 26 181-206 37-62 (268)
275 cd00878 Arf_Arl Arf (ADP-ribos 96.2 0.0041 8.9E-08 47.2 2.9 22 186-207 2-23 (158)
276 TIGR02528 EutP ethanolamine ut 96.2 0.0041 8.8E-08 46.4 2.8 23 185-207 2-24 (142)
277 cd03237 ABC_RNaseL_inhibitor_d 96.2 0.0043 9.2E-08 51.4 3.1 24 183-206 25-48 (246)
278 cd00157 Rho Rho (Ras homology) 96.2 0.0044 9.5E-08 47.6 3.0 22 186-207 3-24 (171)
279 cd04123 Rab21 Rab21 subfamily. 96.2 0.0045 9.8E-08 46.9 3.0 22 186-207 3-24 (162)
280 PRK14970 DNA polymerase III su 96.2 0.0099 2.1E-07 52.1 5.6 46 160-206 17-62 (367)
281 PRK15177 Vi polysaccharide exp 96.2 0.0044 9.5E-08 50.1 3.1 24 183-206 13-36 (213)
282 cd04124 RabL2 RabL2 subfamily. 96.2 0.0045 9.7E-08 47.4 3.0 21 186-206 3-23 (161)
283 PRK15453 phosphoribulokinase; 96.2 0.005 1.1E-07 51.7 3.4 24 182-205 4-27 (290)
284 cd01858 NGP_1 NGP-1. Autoanti 96.2 0.012 2.5E-07 45.1 5.3 45 164-208 82-127 (157)
285 PRK10247 putative ABC transpor 96.2 0.0045 9.7E-08 50.4 3.1 24 183-206 33-56 (225)
286 PRK13948 shikimate kinase; Pro 96.2 0.0048 1E-07 48.7 3.2 26 181-206 8-33 (182)
287 cd01394 radB RadB. The archaea 96.2 0.022 4.7E-07 46.0 7.1 40 179-220 15-54 (218)
288 TIGR01184 ntrCD nitrate transp 96.2 0.0046 9.9E-08 50.6 3.1 24 183-206 11-34 (230)
289 PRK14721 flhF flagellar biosyn 96.1 0.009 2E-07 53.2 5.1 44 182-225 190-234 (420)
290 PRK07994 DNA polymerase III su 96.1 0.009 1.9E-07 56.0 5.3 46 160-206 16-61 (647)
291 cd03219 ABC_Mj1267_LivG_branch 96.1 0.0043 9.2E-08 50.8 2.9 24 183-206 26-49 (236)
292 TIGR02770 nickel_nikD nickel i 96.1 0.0045 9.7E-08 50.6 3.0 24 183-206 12-35 (230)
293 TIGR02639 ClpA ATP-dependent C 96.1 0.0095 2.1E-07 57.0 5.6 47 160-206 454-507 (731)
294 cd01983 Fer4_NifH The Fer4_Nif 96.1 0.0042 9.2E-08 42.7 2.5 22 185-206 1-22 (99)
295 cd03114 ArgK-like The function 96.1 0.0039 8.5E-08 47.5 2.5 22 185-206 1-22 (148)
296 PRK03731 aroL shikimate kinase 96.1 0.0044 9.5E-08 48.1 2.8 23 184-206 3-25 (171)
297 PRK13233 nifH nitrogenase redu 96.1 0.0044 9.6E-08 52.0 3.0 21 183-203 2-22 (275)
298 TIGR01978 sufC FeS assembly AT 96.1 0.0046 9.9E-08 50.8 3.1 24 183-206 26-49 (243)
299 cd04177 RSR1 RSR1 subgroup. R 96.1 0.0055 1.2E-07 47.2 3.3 22 186-207 4-25 (168)
300 PRK11124 artP arginine transpo 96.1 0.0047 1E-07 50.8 3.1 24 183-206 28-51 (242)
301 PRK13768 GTPase; Provisional 96.1 0.005 1.1E-07 51.2 3.3 23 183-205 2-24 (253)
302 cd03278 ABC_SMC_barmotin Barmo 96.1 0.0045 9.8E-08 49.4 2.9 21 184-204 23-43 (197)
303 PF13086 AAA_11: AAA domain; P 96.1 0.012 2.5E-07 47.5 5.4 50 185-234 19-75 (236)
304 cd03301 ABC_MalK_N The N-termi 96.1 0.0049 1.1E-07 49.6 3.1 24 183-206 26-49 (213)
305 cd01860 Rab5_related Rab5-rela 96.1 0.0049 1.1E-07 46.9 3.0 23 185-207 3-25 (163)
306 cd03218 ABC_YhbG The ABC trans 96.1 0.0048 1E-07 50.3 3.1 24 183-206 26-49 (232)
307 PF06309 Torsin: Torsin; Inte 96.1 0.012 2.6E-07 43.3 4.9 47 160-206 25-76 (127)
308 COG1121 ZnuC ABC-type Mn/Zn tr 96.1 0.0047 1E-07 51.1 3.0 23 183-205 30-52 (254)
309 smart00178 SAR Sar1p-like memb 96.1 0.01 2.2E-07 46.7 4.8 37 169-206 4-40 (184)
310 PRK10908 cell division protein 96.1 0.005 1.1E-07 50.0 3.1 25 182-206 27-51 (222)
311 cd01898 Obg Obg subfamily. Th 96.1 0.0047 1E-07 47.4 2.8 21 186-206 3-23 (170)
312 cd03268 ABC_BcrA_bacitracin_re 96.1 0.0052 1.1E-07 49.3 3.1 24 183-206 26-49 (208)
313 cd03262 ABC_HisP_GlnQ_permease 96.1 0.0052 1.1E-07 49.5 3.1 24 183-206 26-49 (213)
314 cd03295 ABC_OpuCA_Osmoprotecti 96.1 0.0051 1.1E-07 50.6 3.1 24 183-206 27-50 (242)
315 PRK11247 ssuB aliphatic sulfon 96.1 0.0051 1.1E-07 51.3 3.1 24 183-206 38-61 (257)
316 cd04171 SelB SelB subfamily. 96.1 0.0052 1.1E-07 46.7 3.0 21 185-205 2-22 (164)
317 cd03266 ABC_NatA_sodium_export 96.1 0.0052 1.1E-07 49.7 3.1 24 183-206 31-54 (218)
318 cd04146 RERG_RasL11_like RERG/ 96.1 0.0058 1.3E-07 46.8 3.3 20 186-205 2-21 (165)
319 PRK12377 putative replication 96.1 0.0099 2.2E-07 49.3 4.8 36 183-220 101-136 (248)
320 smart00072 GuKc Guanylate kina 96.1 0.0058 1.3E-07 48.2 3.3 24 183-206 2-25 (184)
321 PRK12724 flagellar biosynthesi 96.1 0.012 2.6E-07 52.2 5.5 25 182-206 222-246 (432)
322 PRK14242 phosphate transporter 96.1 0.0053 1.1E-07 50.9 3.2 23 183-205 32-54 (253)
323 PRK13236 nitrogenase reductase 96.1 0.0059 1.3E-07 52.0 3.5 25 181-205 4-28 (296)
324 TIGR02239 recomb_RAD51 DNA rep 96.1 0.022 4.7E-07 49.0 7.0 60 176-236 89-154 (316)
325 PRK14952 DNA polymerase III su 96.1 0.01 2.3E-07 55.0 5.3 46 160-206 13-58 (584)
326 cd03232 ABC_PDR_domain2 The pl 96.1 0.0054 1.2E-07 48.7 3.1 24 183-206 33-56 (192)
327 TIGR01189 ccmA heme ABC export 96.1 0.0056 1.2E-07 48.8 3.1 24 183-206 26-49 (198)
328 TIGR00972 3a0107s01c2 phosphat 96.1 0.0052 1.1E-07 50.8 3.0 23 183-205 27-49 (247)
329 cd03246 ABCC_Protease_Secretio 96.1 0.0058 1.3E-07 47.6 3.2 24 183-206 28-51 (173)
330 PRK06851 hypothetical protein; 96.1 0.12 2.5E-06 45.4 11.4 40 163-208 200-239 (367)
331 PRK13540 cytochrome c biogenes 96.0 0.0057 1.2E-07 48.8 3.1 25 182-206 26-50 (200)
332 PRK07429 phosphoribulokinase; 96.0 0.0064 1.4E-07 52.5 3.6 26 181-206 6-31 (327)
333 cd03115 SRP The signal recogni 96.0 0.006 1.3E-07 47.4 3.2 22 185-206 2-23 (173)
334 PRK13231 nitrogenase reductase 96.0 0.0055 1.2E-07 51.1 3.2 23 183-205 2-24 (264)
335 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.0 0.0059 1.3E-07 46.2 3.0 24 183-206 26-49 (144)
336 PRK13539 cytochrome c biogenes 96.0 0.0057 1.2E-07 49.1 3.1 25 182-206 27-51 (207)
337 cd04140 ARHI_like ARHI subfami 96.0 0.0065 1.4E-07 46.6 3.3 22 185-206 3-24 (165)
338 TIGR02324 CP_lyasePhnL phospho 96.0 0.0056 1.2E-07 49.7 3.1 24 183-206 34-57 (224)
339 PRK14247 phosphate ABC transpo 96.0 0.0055 1.2E-07 50.6 3.1 24 183-206 29-52 (250)
340 PRK07940 DNA polymerase III su 96.0 0.012 2.6E-07 52.1 5.3 46 160-205 5-58 (394)
341 PRK14950 DNA polymerase III su 96.0 0.011 2.4E-07 55.1 5.4 46 160-206 16-61 (585)
342 cd03214 ABC_Iron-Siderophores_ 96.0 0.006 1.3E-07 47.9 3.1 24 183-206 25-48 (180)
343 cd04101 RabL4 RabL4 (Rab-like4 96.0 0.0058 1.3E-07 46.6 3.0 21 186-206 3-23 (164)
344 TIGR00455 apsK adenylylsulfate 96.0 0.0073 1.6E-07 47.5 3.6 25 182-206 17-41 (184)
345 TIGR00017 cmk cytidylate kinas 96.0 0.0057 1.2E-07 49.7 3.1 22 184-205 3-24 (217)
346 cd03223 ABCD_peroxisomal_ALDP 96.0 0.0061 1.3E-07 47.2 3.1 24 183-206 27-50 (166)
347 cd03230 ABC_DR_subfamily_A Thi 96.0 0.0061 1.3E-07 47.5 3.1 24 183-206 26-49 (173)
348 PF00625 Guanylate_kin: Guanyl 96.0 0.0054 1.2E-07 48.3 2.8 24 183-206 2-25 (183)
349 cd03252 ABCC_Hemolysin The ABC 96.0 0.0058 1.3E-07 50.1 3.1 24 183-206 28-51 (237)
350 cd03233 ABC_PDR_domain1 The pl 96.0 0.0057 1.2E-07 49.0 3.0 24 183-206 33-56 (202)
351 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 96.0 0.006 1.3E-07 46.8 3.0 24 184-207 3-26 (166)
352 PRK14954 DNA polymerase III su 96.0 0.011 2.5E-07 55.2 5.3 45 160-205 16-60 (620)
353 PRK05342 clpX ATP-dependent pr 96.0 0.012 2.6E-07 52.4 5.2 46 161-206 72-131 (412)
354 PRK10865 protein disaggregatio 96.0 0.012 2.6E-07 57.3 5.6 47 160-206 568-621 (857)
355 PHA02530 pseT polynucleotide k 96.0 0.0062 1.3E-07 51.7 3.3 24 183-206 2-25 (300)
356 PRK09544 znuC high-affinity zi 96.0 0.006 1.3E-07 50.6 3.1 24 183-206 30-53 (251)
357 cd03267 ABC_NatA_like Similar 96.0 0.006 1.3E-07 50.1 3.1 24 183-206 47-70 (236)
358 PRK14241 phosphate transporter 96.0 0.0061 1.3E-07 50.7 3.1 24 183-206 30-53 (258)
359 TIGR01277 thiQ thiamine ABC tr 96.0 0.0062 1.3E-07 49.1 3.1 24 183-206 24-47 (213)
360 COG3842 PotA ABC-type spermidi 96.0 0.0056 1.2E-07 53.1 3.0 22 184-205 32-53 (352)
361 cd04162 Arl9_Arfrp2_like Arl9/ 96.0 0.0067 1.4E-07 46.7 3.2 21 186-206 2-22 (164)
362 cd03216 ABC_Carb_Monos_I This 96.0 0.0066 1.4E-07 46.9 3.1 24 183-206 26-49 (163)
363 PRK14245 phosphate ABC transpo 96.0 0.0061 1.3E-07 50.4 3.1 22 183-204 29-50 (250)
364 PRK14274 phosphate ABC transpo 96.0 0.0062 1.3E-07 50.7 3.2 23 183-205 38-60 (259)
365 PRK14239 phosphate transporter 96.0 0.0061 1.3E-07 50.4 3.1 23 183-205 31-53 (252)
366 TIGR01243 CDC48 AAA family ATP 96.0 0.0098 2.1E-07 57.0 4.9 47 160-206 178-235 (733)
367 PRK10575 iron-hydroxamate tran 96.0 0.0057 1.2E-07 51.1 2.9 24 183-206 37-60 (265)
368 PRK14256 phosphate ABC transpo 96.0 0.0063 1.4E-07 50.4 3.1 24 183-206 30-53 (252)
369 PRK11264 putative amino-acid A 96.0 0.0063 1.4E-07 50.3 3.1 24 183-206 29-52 (250)
370 PRK11300 livG leucine/isoleuci 96.0 0.0064 1.4E-07 50.4 3.2 24 183-206 31-54 (255)
371 PRK09111 DNA polymerase III su 96.0 0.012 2.5E-07 54.9 5.2 46 160-206 24-69 (598)
372 cd03215 ABC_Carb_Monos_II This 96.0 0.0064 1.4E-07 47.8 3.0 24 183-206 26-49 (182)
373 PRK14250 phosphate ABC transpo 96.0 0.0063 1.4E-07 50.1 3.1 24 183-206 29-52 (241)
374 PRK14490 putative bifunctional 96.0 0.0068 1.5E-07 53.2 3.5 25 182-206 4-28 (369)
375 PRK10895 lipopolysaccharide AB 96.0 0.0061 1.3E-07 50.1 3.0 24 183-206 29-52 (241)
376 TIGR01241 FtsH_fam ATP-depende 96.0 0.0093 2E-07 54.5 4.5 48 160-207 55-112 (495)
377 cd03228 ABCC_MRP_Like The MRP 95.9 0.0069 1.5E-07 47.1 3.2 24 183-206 28-51 (171)
378 PRK09493 glnQ glutamine ABC tr 95.9 0.0064 1.4E-07 49.9 3.1 24 183-206 27-50 (240)
379 cd01897 NOG NOG1 is a nucleola 95.9 0.0062 1.4E-07 46.6 2.9 23 185-207 2-24 (168)
380 TIGR03410 urea_trans_UrtE urea 95.9 0.0064 1.4E-07 49.6 3.0 25 182-206 25-49 (230)
381 cd04161 Arl2l1_Arl13_like Arl2 95.9 0.0065 1.4E-07 46.9 2.9 21 186-206 2-22 (167)
382 cd03294 ABC_Pro_Gly_Bertaine T 95.9 0.0064 1.4E-07 51.0 3.1 24 183-206 50-73 (269)
383 cd03247 ABCC_cytochrome_bd The 95.9 0.0069 1.5E-07 47.4 3.1 24 183-206 28-51 (178)
384 PRK12727 flagellar biosynthesi 95.9 0.013 2.9E-07 53.4 5.2 25 182-206 349-373 (559)
385 PRK05642 DNA replication initi 95.9 0.021 4.4E-07 47.0 6.0 24 183-206 45-68 (234)
386 COG1123 ATPase components of v 95.9 0.0059 1.3E-07 55.6 3.0 23 183-205 317-339 (539)
387 cd04115 Rab33B_Rab33A Rab33B/R 95.9 0.0077 1.7E-07 46.5 3.3 24 184-207 3-26 (170)
388 KOG3347 Predicted nucleotide k 95.9 0.0056 1.2E-07 46.3 2.4 24 183-206 7-30 (176)
389 PTZ00088 adenylate kinase 1; P 95.9 0.0061 1.3E-07 49.9 2.8 21 186-206 9-29 (229)
390 KOG0991 Replication factor C, 95.9 0.012 2.5E-07 48.1 4.3 44 160-205 27-70 (333)
391 TIGR03005 ectoine_ehuA ectoine 95.9 0.0066 1.4E-07 50.3 3.1 24 183-206 26-49 (252)
392 PRK13638 cbiO cobalt transport 95.9 0.0063 1.4E-07 51.1 3.0 24 183-206 27-50 (271)
393 COG3638 ABC-type phosphate/pho 95.9 0.007 1.5E-07 49.3 3.1 24 182-205 29-52 (258)
394 TIGR01188 drrA daunorubicin re 95.9 0.0066 1.4E-07 51.8 3.1 24 183-206 19-42 (302)
395 PRK10744 pstB phosphate transp 95.9 0.0068 1.5E-07 50.5 3.1 24 183-206 39-62 (260)
396 cd04175 Rap1 Rap1 subgroup. T 95.9 0.0079 1.7E-07 46.0 3.3 22 185-206 3-24 (164)
397 cd03245 ABCC_bacteriocin_expor 95.9 0.0069 1.5E-07 49.0 3.1 25 182-206 29-53 (220)
398 PRK13649 cbiO cobalt transport 95.9 0.0065 1.4E-07 51.2 3.1 24 183-206 33-56 (280)
399 cd03231 ABC_CcmA_heme_exporter 95.9 0.0071 1.5E-07 48.3 3.1 24 183-206 26-49 (201)
400 PRK11022 dppD dipeptide transp 95.9 0.0067 1.5E-07 52.4 3.1 24 183-206 33-56 (326)
401 TIGR01420 pilT_fam pilus retra 95.9 0.01 2.2E-07 51.7 4.2 24 183-206 122-145 (343)
402 PRK11831 putative ABC transpor 95.9 0.0067 1.5E-07 50.8 3.1 24 183-206 33-56 (269)
403 PRK15056 manganese/iron transp 95.9 0.0068 1.5E-07 50.9 3.1 24 183-206 33-56 (272)
404 cd03298 ABC_ThiQ_thiamine_tran 95.9 0.0072 1.6E-07 48.6 3.1 24 183-206 24-47 (211)
405 cd03251 ABCC_MsbA MsbA is an e 95.9 0.0071 1.5E-07 49.4 3.1 24 183-206 28-51 (234)
406 PRK10619 histidine/lysine/argi 95.9 0.007 1.5E-07 50.3 3.1 25 182-206 30-54 (257)
407 PRK13645 cbiO cobalt transport 95.9 0.0068 1.5E-07 51.3 3.1 24 183-206 37-60 (289)
408 TIGR01817 nifA Nif-specific re 95.9 0.25 5.4E-06 45.6 13.6 48 159-206 195-242 (534)
409 cd03234 ABCG_White The White s 95.9 0.0076 1.6E-07 49.1 3.3 24 183-206 33-56 (226)
410 PRK08533 flagellar accessory p 95.9 0.023 5.1E-07 46.5 6.1 48 182-232 23-71 (230)
411 TIGR02640 gas_vesic_GvpN gas v 95.9 0.0084 1.8E-07 50.1 3.6 34 168-205 10-43 (262)
412 PRK00089 era GTPase Era; Revie 95.9 0.008 1.7E-07 50.9 3.5 25 182-206 4-28 (292)
413 cd03253 ABCC_ATM1_transporter 95.9 0.0073 1.6E-07 49.4 3.1 24 183-206 27-50 (236)
414 PRK14262 phosphate ABC transpo 95.9 0.0072 1.6E-07 50.0 3.1 23 183-205 29-51 (250)
415 PRK11701 phnK phosphonate C-P 95.9 0.0073 1.6E-07 50.2 3.1 24 183-206 32-55 (258)
416 PRK14267 phosphate ABC transpo 95.9 0.0073 1.6E-07 50.0 3.1 24 183-206 30-53 (253)
417 cd03290 ABCC_SUR1_N The SUR do 95.9 0.0075 1.6E-07 48.8 3.1 24 183-206 27-50 (218)
418 cd03249 ABC_MTABC3_MDL1_MDL2 M 95.9 0.0073 1.6E-07 49.5 3.1 24 183-206 29-52 (238)
419 COG0410 LivF ABC-type branched 95.9 0.0077 1.7E-07 48.8 3.1 27 182-208 28-54 (237)
420 cd01870 RhoA_like RhoA-like su 95.9 0.0085 1.8E-07 46.3 3.3 24 184-207 2-25 (175)
421 PRK14238 phosphate transporter 95.9 0.0074 1.6E-07 50.6 3.2 24 183-206 50-73 (271)
422 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 95.9 0.0073 1.6E-07 49.2 3.1 24 183-206 48-71 (224)
423 PRK14273 phosphate ABC transpo 95.9 0.0075 1.6E-07 50.0 3.2 24 183-206 33-56 (254)
424 cd04153 Arl5_Arl8 Arl5/Arl8 su 95.9 0.013 2.7E-07 45.6 4.3 35 170-206 4-38 (174)
425 PRK05416 glmZ(sRNA)-inactivati 95.9 0.0082 1.8E-07 50.8 3.4 24 182-205 5-28 (288)
426 cd04135 Tc10 TC10 subfamily. 95.8 0.0087 1.9E-07 46.2 3.3 21 186-206 3-23 (174)
427 PF14532 Sigma54_activ_2: Sigm 95.8 0.0052 1.1E-07 46.1 2.0 46 163-208 1-46 (138)
428 PRK14531 adenylate kinase; Pro 95.8 0.0081 1.8E-07 47.3 3.2 24 184-207 3-26 (183)
429 PRK14235 phosphate transporter 95.8 0.0076 1.6E-07 50.5 3.2 24 183-206 45-68 (267)
430 cd04127 Rab27A Rab27a subfamil 95.8 0.0087 1.9E-07 46.5 3.3 23 184-206 5-27 (180)
431 PRK14259 phosphate ABC transpo 95.8 0.0076 1.6E-07 50.5 3.1 24 183-206 39-62 (269)
432 COG3899 Predicted ATPase [Gene 95.8 0.017 3.6E-07 56.2 5.8 46 161-206 1-47 (849)
433 PLN02165 adenylate isopentenyl 95.8 0.0083 1.8E-07 51.6 3.3 25 182-206 42-66 (334)
434 cd01868 Rab11_like Rab11-like. 95.8 0.0079 1.7E-07 46.0 3.0 24 184-207 4-27 (165)
435 cd01866 Rab2 Rab2 subfamily. 95.8 0.0079 1.7E-07 46.3 3.0 23 184-206 5-27 (168)
436 cd00877 Ran Ran (Ras-related n 95.8 0.0081 1.7E-07 46.3 3.0 22 185-206 2-23 (166)
437 PRK14243 phosphate transporter 95.8 0.0079 1.7E-07 50.3 3.2 23 183-205 36-58 (264)
438 PRK13640 cbiO cobalt transport 95.8 0.0078 1.7E-07 50.8 3.1 24 183-206 33-56 (282)
439 COG4619 ABC-type uncharacteriz 95.8 0.0078 1.7E-07 46.7 2.8 23 184-206 30-52 (223)
440 PRK12338 hypothetical protein; 95.8 0.0085 1.8E-07 51.3 3.3 25 183-207 4-28 (319)
441 PRK13632 cbiO cobalt transport 95.8 0.0078 1.7E-07 50.5 3.1 24 183-206 35-58 (271)
442 CHL00131 ycf16 sulfate ABC tra 95.8 0.0075 1.6E-07 49.9 3.0 24 183-206 33-56 (252)
443 cd04156 ARLTS1 ARLTS1 subfamil 95.8 0.0079 1.7E-07 45.7 2.9 22 186-207 2-23 (160)
444 PRK14237 phosphate transporter 95.8 0.008 1.7E-07 50.3 3.2 24 183-206 46-69 (267)
445 cd01129 PulE-GspE PulE/GspE Th 95.8 0.016 3.5E-07 48.5 5.0 41 163-205 62-102 (264)
446 PRK13543 cytochrome c biogenes 95.8 0.0082 1.8E-07 48.5 3.1 24 183-206 37-60 (214)
447 cd04106 Rab23_lke Rab23-like s 95.8 0.0094 2E-07 45.3 3.3 21 186-206 3-23 (162)
448 cd01855 YqeH YqeH. YqeH is an 95.8 0.011 2.3E-07 46.8 3.7 40 164-207 112-151 (190)
449 cd03283 ABC_MutS-like MutS-lik 95.8 0.0078 1.7E-07 48.2 2.9 23 184-206 26-48 (199)
450 PRK09112 DNA polymerase III su 95.8 0.019 4.1E-07 50.1 5.5 48 158-206 21-68 (351)
451 PRK00454 engB GTP-binding prot 95.8 0.0088 1.9E-07 47.1 3.2 25 182-206 23-47 (196)
452 PRK14248 phosphate ABC transpo 95.8 0.0077 1.7E-07 50.4 3.0 23 183-205 47-69 (268)
453 cd03273 ABC_SMC2_euk Eukaryoti 95.8 0.008 1.7E-07 49.8 3.1 22 183-204 25-46 (251)
454 cd04122 Rab14 Rab14 subfamily. 95.8 0.0095 2.1E-07 45.7 3.3 22 185-206 4-25 (166)
455 TIGR03873 F420-0_ABC_ATP propo 95.8 0.0078 1.7E-07 50.0 3.0 24 183-206 27-50 (256)
456 COG0468 RecA RecA/RadA recombi 95.8 0.033 7.2E-07 46.9 6.7 50 178-229 55-106 (279)
457 PRK13548 hmuV hemin importer A 95.8 0.008 1.7E-07 50.0 3.1 24 183-206 28-51 (258)
458 cd03236 ABC_RNaseL_inhibitor_d 95.8 0.0083 1.8E-07 50.0 3.1 24 183-206 26-49 (255)
459 PF00009 GTP_EFTU: Elongation 95.8 0.01 2.3E-07 46.8 3.6 26 182-207 2-27 (188)
460 PRK10418 nikD nickel transport 95.8 0.0081 1.8E-07 49.9 3.1 24 183-206 29-52 (254)
461 COG0003 ArsA Predicted ATPase 95.8 0.0069 1.5E-07 52.1 2.7 20 183-202 2-21 (322)
462 PRK11231 fecE iron-dicitrate t 95.8 0.0081 1.8E-07 49.9 3.1 24 183-206 28-51 (255)
463 cd04103 Centaurin_gamma Centau 95.8 0.0086 1.9E-07 45.9 3.0 19 186-204 3-21 (158)
464 cd03244 ABCC_MRP_domain2 Domai 95.8 0.0085 1.9E-07 48.5 3.1 24 183-206 30-53 (221)
465 PRK13407 bchI magnesium chelat 95.8 0.011 2.5E-07 51.0 4.1 46 158-205 6-51 (334)
466 PF13604 AAA_30: AAA domain; P 95.8 0.017 3.8E-07 46.0 4.9 24 183-206 18-41 (196)
467 PRK14240 phosphate transporter 95.8 0.0083 1.8E-07 49.6 3.1 23 183-205 29-51 (250)
468 cd04145 M_R_Ras_like M-Ras/R-R 95.8 0.0087 1.9E-07 45.5 3.0 22 185-206 4-25 (164)
469 PRK14265 phosphate ABC transpo 95.8 0.0083 1.8E-07 50.4 3.1 23 183-205 46-68 (274)
470 COG4107 PhnK ABC-type phosphon 95.8 0.0082 1.8E-07 46.8 2.8 23 184-206 33-55 (258)
471 PRK14261 phosphate ABC transpo 95.8 0.0083 1.8E-07 49.7 3.1 23 183-205 32-54 (253)
472 PRK13547 hmuV hemin importer A 95.8 0.0082 1.8E-07 50.5 3.1 24 183-206 27-50 (272)
473 TIGR02314 ABC_MetN D-methionin 95.8 0.0082 1.8E-07 52.2 3.1 24 183-206 31-54 (343)
474 PRK15093 antimicrobial peptide 95.8 0.0083 1.8E-07 51.9 3.1 24 183-206 33-56 (330)
475 cd01861 Rab6 Rab6 subfamily. 95.8 0.0089 1.9E-07 45.4 3.0 22 186-207 3-24 (161)
476 PRK14269 phosphate ABC transpo 95.8 0.0087 1.9E-07 49.4 3.2 24 183-206 28-51 (246)
477 PRK09580 sufC cysteine desulfu 95.7 0.0079 1.7E-07 49.6 2.9 24 183-206 27-50 (248)
478 PRK10867 signal recognition pa 95.7 0.039 8.4E-07 49.5 7.4 25 181-205 98-122 (433)
479 TIGR03598 GTPase_YsxC ribosome 95.7 0.0097 2.1E-07 46.5 3.2 27 181-207 16-42 (179)
480 PRK11034 clpA ATP-dependent Cl 95.7 0.016 3.5E-07 55.4 5.3 46 161-206 459-511 (758)
481 PRK09183 transposase/IS protei 95.7 0.0085 1.8E-07 50.0 3.1 23 184-206 103-125 (259)
482 PRK13650 cbiO cobalt transport 95.7 0.0086 1.9E-07 50.5 3.1 24 183-206 33-56 (279)
483 PRK10771 thiQ thiamine transpo 95.7 0.0086 1.9E-07 48.9 3.0 24 183-206 25-48 (232)
484 PLN00020 ribulose bisphosphate 95.7 0.0097 2.1E-07 51.9 3.4 27 181-207 146-172 (413)
485 TIGR03771 anch_rpt_ABC anchore 95.7 0.0088 1.9E-07 48.6 3.1 24 183-206 6-29 (223)
486 PRK14953 DNA polymerase III su 95.7 0.018 3.8E-07 52.5 5.3 46 160-206 16-61 (486)
487 cd03274 ABC_SMC4_euk Eukaryoti 95.7 0.0085 1.8E-07 48.5 2.9 22 183-204 25-46 (212)
488 PRK14260 phosphate ABC transpo 95.7 0.009 1.9E-07 49.7 3.2 23 183-205 33-55 (259)
489 cd03254 ABCC_Glucan_exporter_l 95.7 0.0087 1.9E-07 48.7 3.0 24 183-206 29-52 (229)
490 PRK12723 flagellar biosynthesi 95.7 0.06 1.3E-06 47.6 8.4 55 182-236 173-232 (388)
491 cd03248 ABCC_TAP TAP, the Tran 95.7 0.0092 2E-07 48.5 3.1 25 182-206 39-63 (226)
492 cd04114 Rab30 Rab30 subfamily. 95.7 0.011 2.4E-07 45.3 3.5 24 182-205 6-29 (169)
493 PRK14255 phosphate ABC transpo 95.7 0.0089 1.9E-07 49.5 3.1 23 183-205 31-53 (252)
494 PRK13185 chlL protochlorophyll 95.7 0.009 2E-07 50.0 3.2 23 183-205 2-24 (270)
495 PRK14270 phosphate ABC transpo 95.7 0.0087 1.9E-07 49.5 3.0 24 183-206 30-53 (251)
496 PTZ00035 Rad51 protein; Provis 95.7 0.056 1.2E-06 46.9 8.1 60 176-236 111-176 (337)
497 cd01865 Rab3 Rab3 subfamily. 95.7 0.0094 2E-07 45.7 3.0 23 185-207 3-25 (165)
498 PF05621 TniB: Bacterial TniB 95.7 0.081 1.8E-06 44.9 8.7 79 160-239 34-123 (302)
499 PRK11153 metN DL-methionine tr 95.7 0.0088 1.9E-07 52.0 3.1 24 183-206 31-54 (343)
500 CHL00176 ftsH cell division pr 95.7 0.012 2.6E-07 55.3 4.2 47 160-206 183-239 (638)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.95 E-value=1.6e-26 Score=218.73 Aligned_cols=219 Identities=18% Similarity=0.252 Sum_probs=175.5
Q ss_pred CcchHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCCCccchHHHHHHHHHHHH
Q 042580 1 MDINFRLFSERLRRLIEGEEGTLPDATKEQFQNLYTEIEIVTSLLSNYENDMFQILFQSLGGEEEFVFSEVQGILKEMKD 80 (241)
Q Consensus 1 ~~avv~~~~~kl~~~l~~~~~~~~~~~~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~Wl~~vr~ 80 (241)
|+++++..++++.+++..+ +..+.+.+..+..|++.|..|+++++++++. .. .. ..+..|...+++
T Consensus 1 ~~~~~s~~~~~~~~~l~~~-~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~--~~-------~~----~~~~~~~e~~~~ 66 (889)
T KOG4658|consen 1 MGACVSFGVEKLDQLLNRE-SECLDGKDNYILELKENLKALQSALEDLDAK--RD-------DL----ERRVNWEEDVGD 66 (889)
T ss_pred CCeEEEEehhhHHHHHHHH-HHHHhchHHHHHHHHHHHHHHHHHHHHHHhh--cc-------hH----HHHHHHHHHHHH
Confidence 7888899999999999999 9999999999999999999999999999998 66 66 899999999999
Q ss_pred HHHhhHHHHHHHHHHHhhhcCC-----C----------CCchHHHHHHHHHHHHHHHHHHHhhccccccCCCCccccccc
Q 042580 81 FVHESEKVIYTFMISRITQQIS-----G----------SSSKDLFDALLGLQSQIIDIKQQLQQFRPNNIGLWVELKSYF 145 (241)
Q Consensus 81 ~~~~~ed~ld~~~~~~~~~~~~-----~----------~~~~~~~~~i~~l~~~i~~i~~~~~~~~~~~~~~~~~~~~~~ 145 (241)
+.|+++|+++.|..+....... . .+|+.....+..+.+++..+.+....+...............
T Consensus 67 ~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~ 146 (889)
T KOG4658|consen 67 LVYLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDP 146 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccc
Confidence 9999999999997766543110 0 122666666666677777666666666543311111110112
Q ss_pred cccCCCCCccCcccCCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhccc-cccCCCeeEEEe--CC
Q 042580 146 TEARNSSSTLGFKKRNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNY-AKNYFDCRAWVG--CE 222 (241)
Q Consensus 146 ~~~~~~~~~~~~~~~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~-v~~~F~~~~wV~--~~ 222 (241)
...+.+.+. .++.. ||.++.++++++.|.+++. .++||+||||+||||||++|||+.. ++++||.+|||+ ++
T Consensus 147 ~~~~e~~~~--~~~~~-VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~ 221 (889)
T KOG4658|consen 147 REKVETRPI--QSESD-VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKE 221 (889)
T ss_pred hhhcccCCC--Ccccc-ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEccc
Confidence 233444554 44555 9999999999999998774 9999999999999999999999988 999999999999 99
Q ss_pred CCHHHHHHHHHHHhCC
Q 042580 223 YYLHKVLDSIIKSVMP 238 (241)
Q Consensus 223 ~~~~~il~~Il~~l~~ 238 (241)
|+..+|+++|++.++.
T Consensus 222 f~~~~iq~~Il~~l~~ 237 (889)
T KOG4658|consen 222 FTTRKIQQTILERLGL 237 (889)
T ss_pred ccHHhHHHHHHHHhcc
Confidence 9999999999998875
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.53 E-value=3.2e-14 Score=120.11 Aligned_cols=75 Identities=33% Similarity=0.454 Sum_probs=67.7
Q ss_pred chHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe--CCCCHHHHHHHHHHHhCCC
Q 042580 165 LEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG--CEYYLHKVLDSIIKSVMPR 239 (241)
Q Consensus 165 ~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~--~~~~~~~il~~Il~~l~~~ 239 (241)
||.++++|.++|.......++|+|+||||+||||||+.+|++..++++|+.++||. +.++..+++..|+.++...
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~ 77 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEP 77 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccccccccccccccccccccc
Confidence 58899999999988657899999999999999999999999988899999999999 7788899999999999765
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.18 E-value=1.4e-10 Score=114.90 Aligned_cols=60 Identities=25% Similarity=0.461 Sum_probs=52.7
Q ss_pred cCCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe
Q 042580 159 KRNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG 220 (241)
Q Consensus 159 ~~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~ 220 (241)
..++||++..+++|..+|..+....++|+||||||+||||||+.+|+. +..+|+..+|+.
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~--l~~~F~g~vfv~ 242 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSR--LSRQFQSSVFID 242 (1153)
T ss_pred cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHH--HhhcCCeEEEee
Confidence 456899999999999998665567999999999999999999999997 778898887764
No 4
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.58 E-value=1.2e-07 Score=78.52 Aligned_cols=49 Identities=14% Similarity=-0.117 Sum_probs=43.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe----CCCCHHHHHHHH
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG----CEYYLHKVLDSI 232 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~----~~~~~~~il~~I 232 (241)
-..++|+|++|+|||||++.+|++.... +|++++||+ +++++.++++.|
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I 68 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSV 68 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHh
Confidence 5678999999999999999999986544 899999988 458999999998
No 5
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.55 E-value=7.9e-08 Score=83.52 Aligned_cols=50 Identities=16% Similarity=-0.085 Sum_probs=42.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe--CCC--CHHHHHHHHH
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG--CEY--YLHKVLDSII 233 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~--~~~--~~~~il~~Il 233 (241)
=.-..|+|++|+||||||+.||++...+ ||++++||. +.+ .+.++++.|+
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIl 222 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVK 222 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhc
Confidence 3557899999999999999999986554 899999998 666 8888888875
No 6
>PTZ00202 tuzin; Provisional
Probab=98.44 E-value=1.5e-05 Score=70.38 Aligned_cols=76 Identities=18% Similarity=0.059 Sum_probs=58.7
Q ss_pred cccCCcccchHHHHHHHHHHhcC-CCCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEeCCCCHHHHHHHHHHH
Q 042580 157 FKKRNIMGLEDEIEELLDLLIVG-EPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVGCEYYLHKVLDSIIKS 235 (241)
Q Consensus 157 ~~~~~~vG~~~~~~~l~~~L~~~-~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~~~~~~~~il~~Il~~ 235 (241)
.+...++||+.+...|...|... ....+++.|+|++|+|||||++.+..... ..+++.......++++.|+..
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNprg~eElLr~LL~A 332 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVRGTEDTLRSVVKA 332 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCCCHHHHHHHHHHH
Confidence 35667899999999999998653 23456999999999999999999997532 223333222779999999999
Q ss_pred hCC
Q 042580 236 VMP 238 (241)
Q Consensus 236 l~~ 238 (241)
|+.
T Consensus 333 LGV 335 (550)
T PTZ00202 333 LGV 335 (550)
T ss_pred cCC
Confidence 985
No 7
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.39 E-value=6.6e-07 Score=70.23 Aligned_cols=49 Identities=31% Similarity=0.337 Sum_probs=34.2
Q ss_pred cccchHHHHHHHHHHh-cCCCCeEEEEEEcCCCccHHHHHHHHHhccccc
Q 042580 162 IMGLEDEIEELLDLLI-VGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAK 210 (241)
Q Consensus 162 ~vG~~~~~~~l~~~L~-~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~ 210 (241)
++||+.+.+.|...|. ......+++.|+|.+|+|||||++.++......
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 6899999999999993 334557999999999999999999999974444
No 8
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.32 E-value=3.1e-06 Score=74.75 Aligned_cols=80 Identities=18% Similarity=0.158 Sum_probs=58.5
Q ss_pred cCCcccchHHHHHHHHHHhcC--CCCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe--CCCCHHHHHHHHHH
Q 042580 159 KRNIMGLEDEIEELLDLLIVG--EPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG--CEYYLHKVLDSIIK 234 (241)
Q Consensus 159 ~~~~vG~~~~~~~l~~~L~~~--~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~--~~~~~~~il~~Il~ 234 (241)
+..++||++++++|...|... ......+-|+|++|+||||+++.++++.......-..+++. ...+...++..|++
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 356899999999999998442 23445678999999999999999999743332122345555 44567788889988
Q ss_pred HhCC
Q 042580 235 SVMP 238 (241)
Q Consensus 235 ~l~~ 238 (241)
++..
T Consensus 109 ~l~~ 112 (394)
T PRK00411 109 QLFG 112 (394)
T ss_pred HhcC
Confidence 8864
No 9
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.30 E-value=2.9e-06 Score=74.15 Aligned_cols=78 Identities=21% Similarity=0.142 Sum_probs=57.2
Q ss_pred CCcccchHHHHHHHHHHhc--CCCCeEEEEEEcCCCccHHHHHHHHHhccccc-cCC--C-eeEEEe--CCCCHHHHHHH
Q 042580 160 RNIMGLEDEIEELLDLLIV--GEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAK-NYF--D-CRAWVG--CEYYLHKVLDS 231 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~--~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~-~~F--~-~~~wV~--~~~~~~~il~~ 231 (241)
..++||+.+++.|..+|.. .......+-|+|++|+|||++++.++++.... ... . ..+|+. ...+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 4789999999999999864 22345678999999999999999999863211 111 1 245666 44466788888
Q ss_pred HHHHhC
Q 042580 232 IIKSVM 237 (241)
Q Consensus 232 Il~~l~ 237 (241)
|++++.
T Consensus 95 i~~~l~ 100 (365)
T TIGR02928 95 LANQLR 100 (365)
T ss_pred HHHHHh
Confidence 888883
No 10
>PRK08118 topology modulation protein; Reviewed
Probab=98.19 E-value=2.2e-06 Score=66.73 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=30.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhccccc-cCCCeeEEEe
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNNNYAK-NYFDCRAWVG 220 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~~~v~-~~F~~~~wV~ 220 (241)
-|.|+|++|+||||||+.+++..... -+||...|-.
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~ 39 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKP 39 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhccc
Confidence 58999999999999999999986555 4688888654
No 11
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.18 E-value=2.8e-06 Score=74.29 Aligned_cols=51 Identities=14% Similarity=-0.132 Sum_probs=43.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe----CCCCHHHHHHHHHH
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG----CEYYLHKVLDSIIK 234 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~----~~~~~~~il~~Il~ 234 (241)
=..++|+|.+|+|||||++.+++.... +||+..+||. +++++.++++.|+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg 222 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKG 222 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhc
Confidence 467899999999999999999997433 3799999998 55899999999854
No 12
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.00 E-value=6e-06 Score=66.96 Aligned_cols=44 Identities=32% Similarity=0.395 Sum_probs=36.5
Q ss_pred cccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 162 IMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 162 ~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
++||+.+++.|.+++..+. ...+.|+|+.|+|||+|++.+.+..
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 5899999999999987643 7889999999999999999999964
No 13
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.95 E-value=5.4e-05 Score=63.22 Aligned_cols=55 Identities=13% Similarity=0.037 Sum_probs=41.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe-CCCCHHHHHHHHHHHhCC
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG-CEYYLHKVLDSIIKSVMP 238 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~-~~~~~~~il~~Il~~l~~ 238 (241)
...++.|+|++|+|||||++.+++...... + +.+|+. ...+..+++..|+..++.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~~~~~~~~~~~l~~i~~~lG~ 97 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKLVNTRVDAEDLLRMVAADFGL 97 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeeeeCCCCCHHHHHHHHHHHcCC
Confidence 356899999999999999999999743221 1 234555 667888899999888754
No 14
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.92 E-value=2.6e-05 Score=69.29 Aligned_cols=66 Identities=18% Similarity=0.126 Sum_probs=52.8
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe--CCCCHHHHH
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG--CEYYLHKVL 229 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~--~~~~~~~il 229 (241)
..+++.+...+.+...|.. -+.|.++|++|+||||+|+.+.+......+|+.+.||+ +.++..+++
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI 242 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFI 242 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHh
Confidence 4577888899999998865 44677899999999999999998755556788888988 667666654
No 15
>PRK07261 topology modulation protein; Provisional
Probab=97.87 E-value=3.5e-05 Score=60.22 Aligned_cols=49 Identities=20% Similarity=0.181 Sum_probs=32.8
Q ss_pred EEEEEcCCCccHHHHHHHHHhccccc-cCCCeeEEEe--CCCCHHHHHHHHH
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNNNYAK-NYFDCRAWVG--CEYYLHKVLDSII 233 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~~~v~-~~F~~~~wV~--~~~~~~~il~~Il 233 (241)
-|.|+|++|+||||||+.+.....+. -+.|...|-. ...+..++...+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~ 53 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADIS 53 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHH
Confidence 48999999999999999998753332 2466666654 3444445544443
No 16
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.84 E-value=1.3e-05 Score=58.63 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+|.|+|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999999886
No 17
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.83 E-value=3.3e-05 Score=62.40 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=35.9
Q ss_pred CCcccchHHHHHHHHHHhc---CCCCeEEEEEEcCCCccHHHHHHHHHhccccccCC
Q 042580 160 RNIMGLEDEIEELLDLLIV---GEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYF 213 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~---~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F 213 (241)
.+++|.+.-++.+.-++.. ....+..+-.||++|+||||||+.|-+. ...+|
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~ 78 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANE--LGVNF 78 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHH--CT--E
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhc--cCCCe
Confidence 3689999988887666542 2346888999999999999999999997 44444
No 18
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.82 E-value=2.3e-05 Score=57.97 Aligned_cols=58 Identities=17% Similarity=0.117 Sum_probs=39.6
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhccccc---cCCCeeEEEe--CCCCHHHHHHHHHHHhCCC
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNNYAK---NYFDCRAWVG--CEYYLHKVLDSIIKSVMPR 239 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~~v~---~~F~~~~wV~--~~~~~~~il~~Il~~l~~~ 239 (241)
+-+++.|+|.+|+|||++++.+.++.... ..-...+|+. ...+..++...|+..+..+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 65 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLP 65 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-S
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcc
Confidence 35789999999999999999999963211 0123356888 4448999999999998754
No 19
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.81 E-value=3.7e-05 Score=57.16 Aligned_cols=42 Identities=29% Similarity=0.294 Sum_probs=34.6
Q ss_pred cchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 164 GLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 164 G~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
|++..+..+...+... ....+.|+|.+|+|||||++.+++..
T Consensus 2 ~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 2 GQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred chHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 6677788888877553 35678899999999999999999973
No 20
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.71 E-value=5.9e-05 Score=65.27 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=41.7
Q ss_pred cCCcccchHHHHHHHHHHhcC----CCCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 159 KRNIMGLEDEIEELLDLLIVG----EPSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 159 ~~~~vG~~~~~~~l~~~L~~~----~~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..+++|+++.++++++++... +...+++.++|++|+||||||+.+.+.-
T Consensus 50 ~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 50 DHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred chhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 347999999999999998652 3457899999999999999999998864
No 21
>PRK06696 uridine kinase; Validated
Probab=97.69 E-value=7.2e-05 Score=60.99 Aligned_cols=42 Identities=29% Similarity=0.300 Sum_probs=34.4
Q ss_pred chHHHHHHHHHHhc-CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 165 LEDEIEELLDLLIV-GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 165 ~~~~~~~l~~~L~~-~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+....++|.+.+.. ......+|+|.|.+|+||||||+.|.+.
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45567778887764 3456899999999999999999999885
No 22
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.68 E-value=3.8e-05 Score=65.50 Aligned_cols=48 Identities=23% Similarity=0.255 Sum_probs=39.2
Q ss_pred CCcccchHHHHHHHHHHhc---CCCCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 160 RNIMGLEDEIEELLDLLIV---GEPSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~---~~~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.+++|++..++.|..++.. ....+..+-++|++|+|||+||+.+.+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999988853 12346668899999999999999998863
No 23
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.001 Score=61.78 Aligned_cols=52 Identities=27% Similarity=0.395 Sum_probs=43.2
Q ss_pred CCcccchHHHHHHHHHHh----cCCCCeEEEEEEcCCCccHHHHHHHHHhccccccCC
Q 042580 160 RNIMGLEDEIEELLDLLI----VGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYF 213 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~----~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F 213 (241)
.+-.|+++.++.++++|- .+..+-.|++.+|++|||||.+++.|..- ....|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkF 466 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKF 466 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCce
Confidence 356799999999999873 35667899999999999999999999885 44554
No 24
>PRK07667 uridine kinase; Provisional
Probab=97.63 E-value=8.3e-05 Score=59.27 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=31.2
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 169 IEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 169 ~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+.+.+.|........+|+|.|.+|+||||||+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45666767655556799999999999999999999885
No 25
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.59 E-value=0.00028 Score=60.95 Aligned_cols=74 Identities=23% Similarity=0.248 Sum_probs=62.1
Q ss_pred cCCcccchHHHHHHHHHHhcCCCC-eEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe--CCCCHHHHHHHHHHH
Q 042580 159 KRNIMGLEDEIEELLDLLIVGEPS-LFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG--CEYYLHKVLDSIIKS 235 (241)
Q Consensus 159 ~~~~vG~~~~~~~l~~~L~~~~~~-~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~--~~~~~~~il~~Il~~ 235 (241)
++.+.+|+.+...|..++.+.+.. +.+|-|+|.+|.|||.+++++++... - ..+|++ ..|+.+.++..|+.+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n--~---~~vw~n~~ecft~~~lle~IL~~ 79 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLN--L---ENVWLNCVECFTYAILLEKILNK 79 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcC--C---cceeeehHHhccHHHHHHHHHHH
Confidence 567889999999999999776543 45558999999999999999999852 2 358999 889999999999998
Q ss_pred hC
Q 042580 236 VM 237 (241)
Q Consensus 236 l~ 237 (241)
+.
T Consensus 80 ~~ 81 (438)
T KOG2543|consen 80 SQ 81 (438)
T ss_pred hc
Confidence 84
No 26
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.57 E-value=9e-05 Score=64.00 Aligned_cols=48 Identities=25% Similarity=0.256 Sum_probs=39.5
Q ss_pred CCcccchHHHHHHHHHHhc---CCCCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 160 RNIMGLEDEIEELLDLLIV---GEPSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~---~~~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.+++|++..++.+..++.. .......+-++|++|+||||||+.+.+..
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 4689999999999888753 23346778899999999999999998863
No 27
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=97.55 E-value=0.00017 Score=60.52 Aligned_cols=102 Identities=13% Similarity=0.136 Sum_probs=76.9
Q ss_pred hHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCCCccchHHHHHHHHHHHHHHH
Q 042580 4 NFRLFSERLRRLIEGEEGTLPDATKEQFQNLYTEIEIVTSLLSNYENDMFQILFQSLGGEEEFVFSEVQGILKEMKDFVH 83 (241)
Q Consensus 4 vv~~~~~kl~~~l~~~~~~~~~~~~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~Wl~~vr~~~~ 83 (241)
-|.++++.|..+.... .+.+.-++.+++-++++|+.+++||+..-... +. .. .....++.++-..||
T Consensus 297 yVdFlL~NLkdfq~ry-sdSlaflKnQiqvIQ~elesLqpFLk~V~ee~-~n-------kh----~~~ed~a~~ii~kAy 363 (402)
T PF12061_consen 297 YVDFLLKNLKDFQGRY-SDSLAFLKNQIQVIQTELESLQPFLKHVVEEP-HN-------KH----DTNEDCATQIIRKAY 363 (402)
T ss_pred HHHHHHhhHHHHhccc-cchHHHHHHHHHHHHHHHHHhhHHHHHHHhcc-ch-------hh----hhhhhHHHHHHHHHh
Confidence 4678889999998888 88888999999999999999999999984431 33 33 458999999999999
Q ss_pred hhHHHHHHHHHHHhhhcCCCCCc---hHHHHHHHHHHHHHH
Q 042580 84 ESEKVIYTFMISRITQQISGSSS---KDLFDALLGLQSQII 121 (241)
Q Consensus 84 ~~ed~ld~~~~~~~~~~~~~~~~---~~~~~~i~~l~~~i~ 121 (241)
++|.++|.|...... .+|.- ..+..+|..++++++
T Consensus 364 evEYVVDaCi~k~~P---~Wcl~~WL~dIieei~~ik~~i~ 401 (402)
T PF12061_consen 364 EVEYVVDACISKSVP---HWCLERWLLDIIEEITCIKAKIQ 401 (402)
T ss_pred heeeeeehhhcCCCc---HHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999998543221 12211 556666666666554
No 28
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.54 E-value=0.004 Score=58.35 Aligned_cols=50 Identities=24% Similarity=0.211 Sum_probs=39.9
Q ss_pred CcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhccccccC
Q 042580 161 NIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNY 212 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~ 212 (241)
.++|.+..+..+...+... ....+.|+|++|+||||||+.+++.......
T Consensus 155 ~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~ 204 (615)
T TIGR02903 155 EIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAKKLKH 204 (615)
T ss_pred hceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhhhccC
Confidence 5889999999888877543 3567999999999999999999987443333
No 29
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.48 E-value=0.00016 Score=64.51 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=34.5
Q ss_pred CcccchHHHHH---HHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 161 NIMGLEDEIEE---LLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 161 ~~vG~~~~~~~---l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+++|.+..+.. |..++..+ ....+-++|++|+||||||+.+.+.
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHH
Confidence 47888776555 66666543 3667888999999999999999886
No 30
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.43 E-value=0.00014 Score=58.66 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=24.1
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.+..+|+|+|.+|+|||||++.|...-
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999999853
No 31
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.42 E-value=0.00011 Score=53.83 Aligned_cols=21 Identities=33% Similarity=0.392 Sum_probs=19.8
Q ss_pred EEEEcCCCccHHHHHHHHHhc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~ 206 (241)
|.|.|+.|+||||+|+.+.+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999887
No 32
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.42 E-value=0.00021 Score=65.32 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=39.5
Q ss_pred CcccchHHHHHHHHHHhc----CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 161 NIMGLEDEIEELLDLLIV----GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~~----~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+++|+++.++.+++.|.. -+..-+|+.++|++|+||||||+.|.+-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 589999999999999832 2345689999999999999999999883
No 33
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0002 Score=66.27 Aligned_cols=51 Identities=25% Similarity=0.334 Sum_probs=42.1
Q ss_pred CcccchHHHHHHHHHHh----cCCCCeEEEEEEcCCCccHHHHHHHHHhccccccCC
Q 042580 161 NIMGLEDEIEELLDLLI----VGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYF 213 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~----~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F 213 (241)
+-.|.++.++.++++|- ...-+-.|++.||++|||||.|++.|.+- ....|
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a--l~Rkf 378 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA--LGRKF 378 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHH--hCCCE
Confidence 45799999999999983 23444589999999999999999999986 55666
No 34
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.39 E-value=0.00031 Score=60.49 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=32.7
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe--CCCCHHHHHH
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG--CEYYLHKVLD 230 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~--~~~~~~~il~ 230 (241)
+.+..+-.||++|+||||||+.|-+..+-..+|-.-.-.+ ..-++.+|..
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife 211 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFE 211 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHH
Confidence 3588888999999999999999999744333332222222 4444544443
No 35
>PF05729 NACHT: NACHT domain
Probab=97.38 E-value=0.00016 Score=55.30 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=28.4
Q ss_pred EEEEEEcCCCccHHHHHHHHHhccccccC----CCeeEEEe
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNNNYAKNY----FDCRAWVG 220 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~~~v~~~----F~~~~wV~ 220 (241)
+++.|+|.+|+||||+++.+..+-..... |...+|..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~ 41 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS 41 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe
Confidence 57899999999999999999986443332 44566666
No 36
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.38 E-value=0.00017 Score=58.06 Aligned_cols=26 Identities=38% Similarity=0.555 Sum_probs=23.3
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+.-.+|+|+|++|+|||||++.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999999874
No 37
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.37 E-value=0.0012 Score=56.63 Aligned_cols=75 Identities=21% Similarity=0.281 Sum_probs=55.1
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc----cccccCCCeeEEEe---CCCCHHHHHHHH
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN----NYAKNYFDCRAWVG---CEYYLHKVLDSI 232 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~----~~v~~~F~~~~wV~---~~~~~~~il~~I 232 (241)
.+++|.+..++.|..++..+. -.+..-++|+.|+||||||+.+... .....|+|+..|.. ....+.+ .+++
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 467899999999999986543 4577789999999999999988873 22345778877765 5566666 4445
Q ss_pred HHHh
Q 042580 233 IKSV 236 (241)
Q Consensus 233 l~~l 236 (241)
.+.+
T Consensus 82 ~~~~ 85 (313)
T PRK05564 82 IEEV 85 (313)
T ss_pred HHHH
Confidence 5544
No 38
>PRK08233 hypothetical protein; Provisional
Probab=97.37 E-value=0.00017 Score=56.46 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..+|+|.|.+|+||||||+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 5799999999999999999998754
No 39
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.33 E-value=0.00021 Score=54.54 Aligned_cols=25 Identities=20% Similarity=0.242 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.--|.|.||+|||||||++++-+.-
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 4568999999999999999999863
No 40
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0014 Score=57.35 Aligned_cols=76 Identities=17% Similarity=0.139 Sum_probs=56.6
Q ss_pred CcccchHHHHHHHHHHhc--CCCCeEEEEEEcCCCccHHHHHHHHHhcccccc-CCCeeEEEe--CCCCHHHHHHHHHHH
Q 042580 161 NIMGLEDEIEELLDLLIV--GEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKN-YFDCRAWVG--CEYYLHKVLDSIIKS 235 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~~--~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~-~F~~~~wV~--~~~~~~~il~~Il~~ 235 (241)
.+.+|+.+.+++...|.. .+....-+-|+|..|+|||+.++.|.+...... ..+ .+.|. ...+...++..|+++
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~~~ 96 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKILNK 96 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHHHH
Confidence 388999999999988754 122344489999999999999999999743221 122 45555 666788899999988
Q ss_pred hC
Q 042580 236 VM 237 (241)
Q Consensus 236 l~ 237 (241)
++
T Consensus 97 ~~ 98 (366)
T COG1474 97 LG 98 (366)
T ss_pred cC
Confidence 75
No 41
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.32 E-value=0.00044 Score=56.61 Aligned_cols=27 Identities=26% Similarity=0.186 Sum_probs=24.1
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 180 EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 180 ~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.....+|+|.|..|+|||||++.+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999999988874
No 42
>PRK06762 hypothetical protein; Provisional
Probab=97.31 E-value=0.00022 Score=55.15 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+|.|+|+.|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999875
No 43
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.30 E-value=0.00056 Score=55.55 Aligned_cols=40 Identities=18% Similarity=0.128 Sum_probs=32.1
Q ss_pred chHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 165 LEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 165 ~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+..++.+..++.. .....+-|+|..|+||||||+.+++.
T Consensus 22 ~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 22 NAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred cHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45567777777643 34678899999999999999999986
No 44
>PRK04195 replication factor C large subunit; Provisional
Probab=97.26 E-value=0.00033 Score=63.67 Aligned_cols=46 Identities=22% Similarity=0.269 Sum_probs=39.2
Q ss_pred CcccchHHHHHHHHHHhcC--CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 161 NIMGLEDEIEELLDLLIVG--EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~~~--~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+++|.+..++.|..|+..- ....+.+-|+|++|+||||||+.+.+.
T Consensus 15 dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999998642 222678999999999999999999886
No 45
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.25 E-value=0.00026 Score=53.15 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
||-++|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999854
No 46
>PRK06547 hypothetical protein; Provisional
Probab=97.25 E-value=0.00051 Score=53.73 Aligned_cols=26 Identities=35% Similarity=0.413 Sum_probs=23.7
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
....+|+|.|+.|+||||||+.+.+.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999999875
No 47
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.24 E-value=0.00044 Score=59.63 Aligned_cols=45 Identities=20% Similarity=0.238 Sum_probs=37.3
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..++.|..++..+. ...+-++|+.|+||||||+.+.+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~~ 59 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALARE 59 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999886643 445779999999999999998774
No 48
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.24 E-value=0.00041 Score=60.81 Aligned_cols=48 Identities=25% Similarity=0.257 Sum_probs=38.0
Q ss_pred cCCcccchHHHHHHHHHHhc---C--------CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 159 KRNIMGLEDEIEELLDLLIV---G--------EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 159 ~~~~vG~~~~~~~l~~~L~~---~--------~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++.|++..++.|.+.+.. . -...+-+.++|++|+|||+||+.+.+.
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 34688999999999887632 1 123456889999999999999999986
No 49
>PTZ00301 uridine kinase; Provisional
Probab=97.23 E-value=0.00029 Score=56.95 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
..+|+|.|.+|+||||||+.|.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 57999999999999999987754
No 50
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.22 E-value=0.00027 Score=46.51 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+|+|.|..|+||||+++.+-+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999886
No 51
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.21 E-value=0.00049 Score=57.34 Aligned_cols=47 Identities=26% Similarity=0.286 Sum_probs=39.7
Q ss_pred CCcccchHHHHHHHHHHhc---CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV---GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~---~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.++-+++|.-.+.. .+..+..+-++|++|.||||||.-|-|.
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~E 75 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANE 75 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHH
Confidence 3689999988888777753 2456899999999999999999999985
No 52
>PRK05541 adenylylsulfate kinase; Provisional
Probab=97.21 E-value=0.00041 Score=54.26 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=28.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG 220 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~ 220 (241)
...+|.++|+.|+||||+|+.+++. ....+...+++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~~ 42 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYLD 42 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEEe
Confidence 4569999999999999999999986 333444445553
No 53
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.19 E-value=0.00058 Score=58.51 Aligned_cols=46 Identities=15% Similarity=0.109 Sum_probs=39.3
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+...+.+..++..+. -..++-++|++|+||||||+.+++.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~ 66 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNE 66 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 467999999999999987643 4578888999999999999999885
No 54
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.19 E-value=0.00045 Score=66.81 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=37.9
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++||+.+++.++++|.... ..-+-++|.+|||||++|+.+...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999997643 334469999999999999998775
No 55
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.17 E-value=0.00051 Score=57.38 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=33.6
Q ss_pred CcccchHHHHHHHHH---Hhc----------CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 161 NIMGLEDEIEELLDL---LIV----------GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~---L~~----------~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++|+++.++.|.++ +.. ..+....+-++|++|+||||+|+.+.+.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 478988887776544 211 1234567889999999999999999763
No 56
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.14 E-value=0.00045 Score=55.65 Aligned_cols=28 Identities=32% Similarity=0.357 Sum_probs=24.7
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhccc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNNNY 208 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~~~ 208 (241)
.+..+|||.|.+|+||||+|+.+++...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 3568999999999999999999998743
No 57
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.13 E-value=0.00044 Score=55.72 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=26.7
Q ss_pred HHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 175 LLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 175 ~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
|+.++.....+|.|+|++|+|||||++.+.+.
T Consensus 5 ~~~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 5 WLFNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred cccCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 44455567899999999999999999999764
No 58
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.12 E-value=0.0016 Score=52.27 Aligned_cols=50 Identities=20% Similarity=0.066 Sum_probs=37.3
Q ss_pred CCCCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe-CCCCHHHHHH
Q 042580 179 GEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG-CEYYLHKVLD 230 (241)
Q Consensus 179 ~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~-~~~~~~~il~ 230 (241)
+=..-+++-|+|.+|+|||+|+.++..+ ....-..++|++ ..++...+.+
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~~~~~rl~~ 58 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEGLSPERFKQ 58 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCCCCHHHHHH
Confidence 3355789999999999999999998776 333456788999 4466655544
No 59
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.11 E-value=0.0028 Score=60.77 Aligned_cols=78 Identities=17% Similarity=0.065 Sum_probs=54.9
Q ss_pred CCcccchHHHHHHHHHHhc---CCCCeEEEEEEcCCCccHHHHHHHHHhcccc---ccCCC--eeEEEe--CCCCHHHHH
Q 042580 160 RNIMGLEDEIEELLDLLIV---GEPSLFIVAIVGNSGFDKTNFAGEAYNNNYA---KNYFD--CRAWVG--CEYYLHKVL 229 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~---~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v---~~~F~--~~~wV~--~~~~~~~il 229 (241)
..++||+++++.|...|.. +...-.++-|+|++|.|||+.++.|.+.... ...+. ..+.|. .-.+...+.
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 4688999999999998854 3333467889999999999999999875321 11222 134554 335677788
Q ss_pred HHHHHHhC
Q 042580 230 DSIIKSVM 237 (241)
Q Consensus 230 ~~Il~~l~ 237 (241)
..|.++|.
T Consensus 835 qvI~qqL~ 842 (1164)
T PTZ00112 835 QVLYKQLF 842 (1164)
T ss_pred HHHHHHHc
Confidence 88887774
No 60
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.10 E-value=0.002 Score=55.04 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=37.5
Q ss_pred CcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 161 NIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+++|++..++.|..++..+. ...+-++|..|+||||+++.+.+.
T Consensus 18 ~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARE 61 (319)
T ss_pred HhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999986643 445799999999999999999885
No 61
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.10 E-value=0.00056 Score=53.41 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 5679999999999999999999865
No 62
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.10 E-value=0.00068 Score=65.61 Aligned_cols=45 Identities=22% Similarity=0.368 Sum_probs=38.2
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|++.++..+++.|.... ..-+-++|.+|+||||||+.+...
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~ 231 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALR 231 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHH
Confidence 368999999999999987643 445569999999999999999885
No 63
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.09 E-value=0.00068 Score=64.31 Aligned_cols=44 Identities=18% Similarity=0.217 Sum_probs=33.6
Q ss_pred CcccchHHHH---HHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 161 NIMGLEDEIE---ELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 161 ~~vG~~~~~~---~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+++|.+..+. .|...+..+ ++..+-++|++|+||||||+.+.+.
T Consensus 29 d~vGQe~ii~~~~~L~~~i~~~--~~~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 29 EFVGQDHILGEGRLLRRAIKAD--RVGSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred HhcCcHHHhhhhHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHH
Confidence 5788887664 455555443 4666789999999999999999986
No 64
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.08 E-value=0.00047 Score=54.22 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHh
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
+..+|.|+|++|+||||+++.+.+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999999873
No 65
>PRK04040 adenylate kinase; Provisional
Probab=97.08 E-value=0.00049 Score=54.65 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..+|.|+|++|+||||+++.+.+.-
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999986654
No 66
>PF13173 AAA_14: AAA domain
Probab=97.07 E-value=0.00047 Score=51.05 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=26.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG 220 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~ 220 (241)
-+++.|.|+.|+|||||+++++.+.. .....+++.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~ 36 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYIN 36 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeec
Confidence 46899999999999999999998633 223445555
No 67
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.06 E-value=0.00077 Score=64.40 Aligned_cols=44 Identities=27% Similarity=0.333 Sum_probs=37.6
Q ss_pred CcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 161 NIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+++|++.+++.+++.|.... ..-+-++|.+|+|||++|+.+...
T Consensus 183 ~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~ 226 (731)
T TIGR02639 183 PLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALR 226 (731)
T ss_pred cccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999886643 444569999999999999999885
No 68
>PLN03025 replication factor C subunit; Provisional
Probab=97.06 E-value=0.00083 Score=57.77 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=35.4
Q ss_pred CcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 161 NIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+++|.+..+..|..++..+. ...+-++|++|+||||+|+.+.+.
T Consensus 14 ~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred HhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 57898888888888776543 444669999999999999998875
No 69
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.05 E-value=0.0004 Score=57.54 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.+..+|-|+||+|+||||++|.++.+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 567888999999999999999999973
No 70
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.05 E-value=0.00051 Score=50.38 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...+.|+|++|+||||+++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 3578999999999999999998873
No 71
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=97.04 E-value=0.0033 Score=48.96 Aligned_cols=70 Identities=17% Similarity=0.106 Sum_probs=41.7
Q ss_pred cccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe-CCCCHHHHHHHHH
Q 042580 162 IMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG-CEYYLHKVLDSII 233 (241)
Q Consensus 162 ~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~-~~~~~~~il~~Il 233 (241)
++|....+.++++.+..-.....-|-|+|..|+||+.+|+.|++.- ...-..-+-|+ ..++.+.+-..++
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s--~r~~~pfi~vnc~~~~~~~~e~~LF 71 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS--PRKNGPFISVNCAALPEELLESELF 71 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS--TTTTS-EEEEETTTS-HHHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh--hcccCCeEEEehhhhhcchhhhhhh
Confidence 4677888888888775422223445599999999999999999952 22212224444 5565554444443
No 72
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.03 E-value=0.0011 Score=56.15 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=21.9
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHh
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
....+|||.|..|+||||||+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999987643
No 73
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.02 E-value=0.00082 Score=59.46 Aligned_cols=47 Identities=26% Similarity=0.273 Sum_probs=37.6
Q ss_pred CCcccchHHHHHHHHHHhc---C--------CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV---G--------EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~---~--------~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++.|++..+++|.+.+.. . -...+-|-++|++|+|||+||+.+.+.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~ 188 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE 188 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH
Confidence 4688999999999887632 1 133566889999999999999999985
No 74
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.00 E-value=0.00064 Score=51.32 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=25.7
Q ss_pred EEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG 220 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~ 220 (241)
.+|+|||..|+|||||++.+.+... +..+...+..+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~-~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK-RRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH-HTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh-HcCCceEEEEE
Confidence 4899999999999999999999732 23344444444
No 75
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.00 E-value=0.0013 Score=57.56 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=38.5
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..++.|.+.+..+. -.+.+-++|+.|+||||||+.+.+.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~ 61 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKS 61 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHH
Confidence 368999999999998886643 3567789999999999999998774
No 76
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.99 E-value=0.00065 Score=49.16 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=20.4
Q ss_pred EEEEcCCCccHHHHHHHHHhcccc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNNNYA 209 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~~~v 209 (241)
|.|+|..|+|||||.+.+.+.+..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~~ 25 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEFP 25 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS--
T ss_pred EEEECcCCCCHHHHHHHHhcCCCc
Confidence 789999999999999999986543
No 77
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.98 E-value=0.00098 Score=64.64 Aligned_cols=45 Identities=18% Similarity=0.292 Sum_probs=38.0
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|++.++..+++.|.... ...+-++|.+|+||||||+.+-..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999997743 444559999999999999998886
No 78
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.96 E-value=0.00054 Score=51.52 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
||.|+|+.|+||||+|+.+-..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998875
No 79
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.94 E-value=0.0017 Score=48.41 Aligned_cols=41 Identities=12% Similarity=0.081 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 167 DEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 167 ~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
++..++-+.|...=..-.+|.+.|.-|+|||||+|.+.+.-
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34455555554321235689999999999999999999864
No 80
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.93 E-value=0.00069 Score=49.77 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=19.6
Q ss_pred EEEEcCCCccHHHHHHHHHhc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~ 206 (241)
|-|+|+.|+||||||+.+.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 568999999999999999998
No 81
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.92 E-value=0.003 Score=55.98 Aligned_cols=75 Identities=16% Similarity=0.239 Sum_probs=50.7
Q ss_pred CCcccchHHHHHHHHHHhcC------------CCCeEEEEEEcCCCccHHHHHHHHHhccccccCC---CeeEEEe---C
Q 042580 160 RNIMGLEDEIEELLDLLIVG------------EPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYF---DCRAWVG---C 221 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~------------~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F---~~~~wV~---~ 221 (241)
..++|.+..++.+..++... +.....|-++|+.|+||||||+.+-.. ....| +..-|.. .
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~--l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH--hCChheeecchhhccCCcc
Confidence 35889999999988877431 112467899999999999999999886 33333 3332222 3
Q ss_pred CCCHHHHHHHHHHHh
Q 042580 222 EYYLHKVLDSIIKSV 236 (241)
Q Consensus 222 ~~~~~~il~~Il~~l 236 (241)
..+...+++.+++..
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 446667776665543
No 82
>PRK05439 pantothenate kinase; Provisional
Probab=96.91 E-value=0.0018 Score=55.34 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=23.4
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHHh
Q 042580 180 EPSLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 180 ~~~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.....+|+|.|.+|+||||||+.+..
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999999876
No 83
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.90 E-value=0.0013 Score=59.99 Aligned_cols=46 Identities=26% Similarity=0.172 Sum_probs=38.4
Q ss_pred CcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 161 NIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
+++|.+...+.|..++..+. -.+.+-++|+.|+||||+|+.+.+.-
T Consensus 15 dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred HhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58999998888888887643 34677999999999999999998753
No 84
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.90 E-value=0.0023 Score=59.92 Aligned_cols=74 Identities=14% Similarity=0.042 Sum_probs=57.4
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe-CCCCHHHHHHHHHHHhCC
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG-CEYYLHKVLDSIIKSVMP 238 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~-~~~~~~~il~~Il~~l~~ 238 (241)
+.++|.+..++.|...+... +.+-++|.+|+||||||+.+.+.- -..+|+...|.. ..-+...+++.++.+++.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~np~~~~~~~~~~v~~~~G~ 105 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPNPEDPNNPKIRTVPAGKGK 105 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeCCCcchHHHHHHHHHhcCH
Confidence 35789888888777766543 368899999999999999998752 233467788988 777888888888877654
No 85
>PHA00729 NTP-binding motif containing protein
Probab=96.89 E-value=0.0017 Score=52.82 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...|.|+|.+|+||||||..|.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 567889999999999999999886
No 86
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.88 E-value=0.022 Score=43.29 Aligned_cols=107 Identities=8% Similarity=0.091 Sum_probs=81.2
Q ss_pred cchHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCCCccchHHHHHHHHHHHHH
Q 042580 2 DINFRLFSERLRRLIEGEEGTLPDATKEQFQNLYTEIEIVTSLLSNYENDMFQILFQSLGGEEEFVFSEVQGILKEMKDF 81 (241)
Q Consensus 2 ~avv~~~~~kl~~~l~~~~~~~~~~~~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~Wl~~vr~~ 81 (241)
.|+++.+++.|...+... .+....++.-+++|...++.+..++++.+.. +.+ -+ ..-+.=++++.+.
T Consensus 8 gaalG~~~~eLlk~v~~~-~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~--~~e------ld----~~~~ee~e~L~~~ 74 (147)
T PF05659_consen 8 GAALGAVFGELLKAVIDA-SKKSLSFKSILKRLESTLESIIPIIKEIDKL--NVE------LD----RPRQEEIERLKEL 74 (147)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHhhhHHHHHHHH--hhh------cC----CchhHHHHHHHHH
Confidence 477888889999888887 8888899999999999999999999999987 431 22 2225667889999
Q ss_pred HHhhHHHHHHHHHHHhhhcCCCCC-chHHHHHHHHHHHHHHHHHH
Q 042580 82 VHESEKVIYTFMISRITQQISGSS-SKDLFDALLGLQSQIIDIKQ 125 (241)
Q Consensus 82 ~~~~ed~ld~~~~~~~~~~~~~~~-~~~~~~~i~~l~~~i~~i~~ 125 (241)
..+++++++.|..-.. ..++ .++++++|+++.+.+....+
T Consensus 75 L~~g~~LV~k~sk~~r----~n~~kk~~y~~Ki~~le~~l~~f~~ 115 (147)
T PF05659_consen 75 LEKGKELVEKCSKVRR----WNLYKKPRYARKIEELEESLRRFIQ 115 (147)
T ss_pred HHHHHHHHHHhccccH----HHHHhhHhHHHHHHHHHHHHHHHhc
Confidence 9999999998843210 1111 17788888888888876644
No 87
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.88 E-value=0.00081 Score=53.83 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+|+|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999876
No 88
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.88 E-value=0.0026 Score=51.87 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=29.4
Q ss_pred ccchHH-HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 163 MGLEDE-IEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 163 vG~~~~-~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.|.+.. ...+.++... ......+.|+|..|+|||+||+.+++.
T Consensus 22 ~~~~~~~~~~l~~~~~~-~~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 22 AGENAELVARLRELAAG-PVADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred cCCcHHHHHHHHHHHhc-cCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 354333 3444444432 234567889999999999999999985
No 89
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.87 E-value=0.0034 Score=51.29 Aligned_cols=51 Identities=14% Similarity=0.105 Sum_probs=36.3
Q ss_pred CCCCeEEEEEEcCCCccHHHHHHHHHhcccccc----CCCeeEEEe--CCCCHHHHH
Q 042580 179 GEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKN----YFDCRAWVG--CEYYLHKVL 229 (241)
Q Consensus 179 ~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~----~F~~~~wV~--~~~~~~~il 229 (241)
+=..-.++.|+|.+|+|||||+.++.-+..... .-..++|++ .+|+...+.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 335568999999999999999999974422222 135788999 666665443
No 90
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.87 E-value=0.0014 Score=54.82 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=37.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhccccccCCCe-eEEEe---CCCCHHHHHHHHHH
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDC-RAWVG---CEYYLHKVLDSIIK 234 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~-~~wV~---~~~~~~~il~~Il~ 234 (241)
=.-++|+|..|+|||||++.++++ ++.+|+. ++++- +.-.+.++...+..
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~ 122 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKE 122 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHh
Confidence 456899999999999999999998 5545543 34443 66677777777654
No 91
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.86 E-value=0.0017 Score=53.80 Aligned_cols=25 Identities=20% Similarity=0.115 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.=.+++|+|+.|+|||||.|.++.-
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3578999999999999999999984
No 92
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.86 E-value=0.00096 Score=51.66 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...|.++|++|+||||+|+.+.+.-
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998863
No 93
>PLN02318 phosphoribulokinase/uridine kinase
Probab=96.85 E-value=0.0016 Score=59.95 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=27.9
Q ss_pred HHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 172 LLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 172 l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+.|........+|+|.|..|+||||||+.|...
T Consensus 54 a~qlL~~~~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 54 ACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred HHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 33444444456899999999999999999999875
No 94
>PRK00625 shikimate kinase; Provisional
Probab=96.85 E-value=0.00086 Score=52.51 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.|.++||.|+||||+++.+-+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3889999999999999999664
No 95
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.84 E-value=0.0015 Score=53.72 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=31.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG 220 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~ 220 (241)
..-++|+|..|+|||||++.+..+ ....|.+..+++
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t 48 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLIT 48 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEe
Confidence 567899999999999999999987 677887777776
No 96
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.83 E-value=0.0014 Score=57.11 Aligned_cols=31 Identities=23% Similarity=0.290 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhccccccCCC
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFD 214 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~ 214 (241)
++...-.||++|+||||||+.|-.. .+..|.
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~--~~~~f~ 77 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGT--TNAAFE 77 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHh--hCCceE
Confidence 4777779999999999999999885 444453
No 97
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.81 E-value=0.0036 Score=61.08 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=45.4
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe---CCCCHHHHHHHHHHHhC
Q 042580 169 IEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG---CEYYLHKVLDSIIKSVM 237 (241)
Q Consensus 169 ~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~---~~~~~~~il~~Il~~l~ 237 (241)
+..|.+.|... ...+++.|.|++|.|||||+.....+ ++.++|++ .+-+...++..++..+.
T Consensus 19 R~rl~~~l~~~-~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~ 83 (903)
T PRK04841 19 RERLLAKLSGA-NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQ 83 (903)
T ss_pred chHHHHHHhcc-cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHH
Confidence 44566666433 45889999999999999999997753 33689999 44466677777776663
No 98
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.81 E-value=0.0016 Score=63.22 Aligned_cols=45 Identities=18% Similarity=0.293 Sum_probs=37.6
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|++.++..++..|.... ..-+-++|.+|+|||+||+.+...
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~ 217 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQR 217 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999997643 344458999999999999998875
No 99
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.79 E-value=0.00097 Score=50.10 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+|.|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999986
No 100
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.79 E-value=0.00095 Score=50.64 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhcc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
+|.++|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998863
No 101
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.79 E-value=0.0013 Score=52.45 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=23.5
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+..+|.|+|++|+||||||+.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999874
No 102
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.78 E-value=0.0023 Score=57.99 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=36.3
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
++++|.+.....|...+..+. -.+.+-++|++|+||||+|+.+.+.
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~ 59 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKS 59 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999888777777765543 2366889999999999999999764
No 103
>PRK13975 thymidylate kinase; Provisional
Probab=96.77 E-value=0.0013 Score=52.30 Aligned_cols=25 Identities=20% Similarity=0.058 Sum_probs=22.4
Q ss_pred EEEEEEcCCCccHHHHHHHHHhccc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNNNY 208 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~~~ 208 (241)
.+|.|.|+.|+||||+++.+.+.-.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998644
No 104
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.77 E-value=0.0012 Score=52.24 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=21.4
Q ss_pred EEEEEEcCCCccHHHHHHHHHhcc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.+|.|+|+.|+|||||++.+....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997753
No 105
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.77 E-value=0.0011 Score=51.79 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=21.2
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
++|.+.|++|+||||+|+.+.+.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999875
No 106
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.77 E-value=0.0042 Score=58.04 Aligned_cols=73 Identities=12% Similarity=0.031 Sum_probs=52.7
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhcccccc-CCCeeEEEe-CCCCHHHHHHHHHHHhC
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKN-YFDCRAWVG-CEYYLHKVLDSIIKSVM 237 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~-~F~~~~wV~-~~~~~~~il~~Il~~l~ 237 (241)
+.++|.+...+.+...+... . .+-++|+.|+|||||++.+.+. +.. .|...+.+. ...+..++++.+...++
T Consensus 18 ~~viG~~~a~~~l~~a~~~~---~-~~ll~G~pG~GKT~la~~la~~--l~~~~~~~~~~~~n~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK---R-NVLLIGEPGVGKSMLAKAMAEL--LPDEELEDILVYPNPEDPNMPRIVEVPAGEG 91 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC---C-CEEEECCCCCCHHHHHHHHHHH--cCchhheeEEEEeCCCCCchHHHHHHHHhhc
Confidence 45789888777777766543 2 4449999999999999999975 333 344445555 55677788888888776
Q ss_pred C
Q 042580 238 P 238 (241)
Q Consensus 238 ~ 238 (241)
.
T Consensus 92 ~ 92 (608)
T TIGR00764 92 R 92 (608)
T ss_pred h
Confidence 4
No 107
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.76 E-value=0.0015 Score=51.04 Aligned_cols=25 Identities=28% Similarity=0.135 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
-.+|.|+|++|+||||+|+.+....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999988753
No 108
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.76 E-value=0.0063 Score=58.55 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=38.2
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+.-+..|.+++..+. -.+.+-++|+.|+||||+|+.+.+.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~ 61 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKG 61 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999886643 2455689999999999999999875
No 109
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.73 E-value=0.0015 Score=49.78 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhcc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
-|+++|.+|+|||||++.+.++.
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~ 24 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDE 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 110
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.72 E-value=0.0075 Score=54.03 Aligned_cols=53 Identities=17% Similarity=0.096 Sum_probs=34.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe-CCCCH--HHHHHHHHHHh
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG-CEYYL--HKVLDSIIKSV 236 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~-~~~~~--~~il~~Il~~l 236 (241)
...+|.++|..|+||||++.++.....- ..+ .++-|+ .++.. .+.+..+..++
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~-~g~-kV~lV~~D~~R~aa~eQL~~la~~~ 149 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK-KGL-KVGLVAADTYRPAAYDQLKQLAEKI 149 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH-cCC-eEEEecCCCCCHHHHHHHHHHHHHc
Confidence 4789999999999999999999875322 222 334455 44433 44455555554
No 111
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.72 E-value=0.0063 Score=53.89 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=49.0
Q ss_pred CcccchHHHHHHHHHHhcC------------CCCeEEEEEEcCCCccHHHHHHHHHhccccccCC---Cee-EEEe--CC
Q 042580 161 NIMGLEDEIEELLDLLIVG------------EPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYF---DCR-AWVG--CE 222 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~~~------------~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F---~~~-~wV~--~~ 222 (241)
.++|.++.++.+...+... +...+-|-++|++|+||||||+.+... ..-.| +.. .|-. ..
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~vG 90 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYVG 90 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCccc
Confidence 4789998888887665431 223477889999999999999999886 33332 332 2322 34
Q ss_pred CCHHHHHHHHHHH
Q 042580 223 YYLHKVLDSIIKS 235 (241)
Q Consensus 223 ~~~~~il~~Il~~ 235 (241)
.+...+++.+++.
T Consensus 91 ~dvE~i~r~l~e~ 103 (441)
T TIGR00390 91 RDVESMVRDLTDA 103 (441)
T ss_pred CCHHHHHHHHHHH
Confidence 4677777766554
No 112
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.71 E-value=0.0013 Score=48.97 Aligned_cols=23 Identities=35% Similarity=0.330 Sum_probs=21.3
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|+|..|+|||||.+.+...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 58999999999999999999885
No 113
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.71 E-value=0.0029 Score=58.57 Aligned_cols=46 Identities=20% Similarity=0.213 Sum_probs=38.0
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..+..|.+.+..+. -.+.+-++|+.|+||||+|+.+-+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~ 61 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKA 61 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999886643 3467889999999999999998664
No 114
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.70 E-value=0.0027 Score=58.34 Aligned_cols=45 Identities=16% Similarity=0.232 Sum_probs=37.3
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHh
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.+++|.+..+..|...+..+. -.+.+-++|+.|+||||||+.+.+
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk 60 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAK 60 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 368999999999998886543 345677899999999999999877
No 115
>PRK13949 shikimate kinase; Provisional
Probab=96.69 E-value=0.0014 Score=51.13 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-|.|+|+.|+|||||++.+.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998875
No 116
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.69 E-value=0.0013 Score=50.59 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
||+|+|+.|+|||||+..+...
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~ 22 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKA 22 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999885
No 117
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.67 E-value=0.0012 Score=47.44 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=17.8
Q ss_pred EEEEcCCCccHHHHHHHHHhc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~ 206 (241)
|-|+|.+|+|||+||+.+..+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999996643
No 118
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.67 E-value=0.0015 Score=49.62 Aligned_cols=34 Identities=15% Similarity=0.171 Sum_probs=24.7
Q ss_pred EEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe
Q 042580 186 VAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG 220 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~ 220 (241)
|.|+|++|+||||+|+.+...... ..|+.-.|+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~-~~~~~d~~~~ 35 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGL-PFVDLDELIE 35 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC-CEEEchHHHH
Confidence 789999999999999999875321 1344445554
No 119
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.67 E-value=0.003 Score=48.69 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 168 EIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 168 ~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.+++|.++|. . +++.++|..||||+||++.+..+.
T Consensus 25 g~~~l~~~l~----~-k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLK----G-KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHT----T-SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhc----C-CEEEEECCCCCCHHHHHHHHHhhc
Confidence 4677777772 3 689999999999999999999974
No 120
>PRK10536 hypothetical protein; Provisional
Probab=96.67 E-value=0.0053 Score=50.92 Aligned_cols=57 Identities=12% Similarity=0.112 Sum_probs=41.2
Q ss_pred ccCCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEE
Q 042580 158 KKRNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAW 218 (241)
Q Consensus 158 ~~~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~w 218 (241)
+-..+.++......++.+|.+ ..++.+.|.+|+|||+||..+.-+.-..+.|+..+-
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred CCccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 334567788888888888865 249999999999999999998775332344554333
No 121
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.66 E-value=0.0034 Score=58.57 Aligned_cols=46 Identities=20% Similarity=0.184 Sum_probs=38.5
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+...+.|..++..+. -.+.+-++|+.|+||||+|+.+-+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~ 60 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKC 60 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999987653 3477789999999999999988664
No 122
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.65 E-value=0.0018 Score=50.79 Aligned_cols=25 Identities=16% Similarity=0.406 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
-.++.|.|++|+||+||++.++++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4688999999999999999999985
No 123
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.65 E-value=0.0016 Score=52.40 Aligned_cols=25 Identities=20% Similarity=0.575 Sum_probs=22.2
Q ss_pred EEEEEEcCCCccHHHHHHHHHhccc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNNNY 208 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~~~ 208 (241)
.-|.|+|.+|+|||||+..+..+..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~ 30 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF 30 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC
Confidence 5689999999999999999998653
No 124
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.64 E-value=0.0016 Score=53.39 Aligned_cols=23 Identities=30% Similarity=0.258 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=-.++|+|++|+|||||.+.|--
T Consensus 29 GEfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999875
No 125
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.64 E-value=0.0022 Score=49.25 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..+|=++|.+|+||||||+.+...-
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688899999999999999999863
No 126
>PLN02348 phosphoribulokinase
Probab=96.64 E-value=0.0041 Score=54.58 Aligned_cols=27 Identities=15% Similarity=0.348 Sum_probs=24.3
Q ss_pred CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 180 EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 180 ~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+..+|+|.|.+|+||||||+.|.+.
T Consensus 46 ~~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 46 DDGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999999885
No 127
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.63 E-value=0.0017 Score=52.10 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=23.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhccc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNNY 208 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~~ 208 (241)
.-.|++|+|++|+|||||.|-++.=+.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcC
Confidence 357999999999999999999988543
No 128
>PRK13947 shikimate kinase; Provisional
Probab=96.63 E-value=0.0015 Score=50.68 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-|.|+|++|+||||+++.+-+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4889999999999999999885
No 129
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.62 E-value=0.002 Score=51.83 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=23.9
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+++|+++|..|+|||||.+.+...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999999875
No 130
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.62 E-value=0.002 Score=46.18 Aligned_cols=22 Identities=41% Similarity=0.406 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHH
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAY 204 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~ 204 (241)
-..++|+|..|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4688999999999999999976
No 131
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.61 E-value=0.0013 Score=50.67 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.2
Q ss_pred EEEEcCCCccHHHHHHHHHhcc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~~ 207 (241)
|.++|+.|+||||+|+.+-+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999988753
No 132
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.61 E-value=0.0033 Score=56.69 Aligned_cols=46 Identities=22% Similarity=0.230 Sum_probs=38.0
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..+..|..++..+. -.+.+-++|+.|+||||+|+.+.+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~ 63 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKR 63 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999988887653 2356889999999999999999774
No 133
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.60 E-value=0.0038 Score=51.57 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 168 EIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 168 ~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...+|++.|.....+..+|+|.|.+|+||+||+-.+-..-
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 4567777776655578999999999999999999887753
No 134
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.60 E-value=0.0019 Score=46.70 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=19.8
Q ss_pred EEEEcCCCccHHHHHHHHHhc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~ 206 (241)
|+|+|+.|+|||||.+.+.+.
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999984
No 135
>CHL00181 cbbX CbbX; Provisional
Probab=96.59 E-value=0.0046 Score=52.41 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=32.2
Q ss_pred CcccchHHHHHHHHHH---hc-------C---CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 161 NIMGLEDEIEELLDLL---IV-------G---EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L---~~-------~---~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+++|.+..+++|.++. .- + ......+-++|.+|+||||+|+.+.+.
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 5789888777665543 11 1 112345788999999999999999663
No 136
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.59 E-value=0.0022 Score=50.80 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+|.|+|++|+|||||++.+.+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4678999999999999999999886
No 137
>PLN02796 D-glycerate 3-kinase
Probab=96.58 E-value=0.0022 Score=55.41 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=24.0
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...-+|+|.|..|+|||||++.+....
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL 124 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLF 124 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHh
Confidence 367899999999999999999999853
No 138
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.58 E-value=0.0033 Score=60.51 Aligned_cols=46 Identities=28% Similarity=0.411 Sum_probs=37.4
Q ss_pred CcccchHHHHHHHHHHhc----CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 161 NIMGLEDEIEELLDLLIV----GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~~----~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++|.+..++.+.+++.. +..+-.++.++|++|+||||||+.+.+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 478999999998887632 2333458999999999999999999986
No 139
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.58 E-value=0.0092 Score=50.18 Aligned_cols=43 Identities=14% Similarity=0.051 Sum_probs=29.1
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe-CCCCH
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG-CEYYL 225 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~-~~~~~ 225 (241)
...++|.++|++|+||||++.++...-. ..-..+++++ .+|..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~--~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLK--KQGKSVLLAAGDTFRA 113 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeCCCCCH
Confidence 4578999999999999998888876432 2212345555 44433
No 140
>PRK06893 DNA replication initiation factor; Validated
Probab=96.58 E-value=0.0022 Score=52.47 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-..+-+||++|+|||+|++.+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~ 62 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH 62 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999986
No 141
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.58 E-value=0.0035 Score=55.60 Aligned_cols=46 Identities=20% Similarity=0.104 Sum_probs=36.9
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..++.|..++..+. -.+-+-++|+.|+||||+|+.+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~ 61 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKA 61 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHH
Confidence 468899998888888886643 3455889999999999999887663
No 142
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.57 E-value=0.0029 Score=60.41 Aligned_cols=45 Identities=27% Similarity=0.296 Sum_probs=37.1
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|++.++..+++.|.... ..-+-++|.+|+|||+||+.+...
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999887743 233357999999999999999875
No 143
>PRK14530 adenylate kinase; Provisional
Probab=96.57 E-value=0.0019 Score=52.33 Aligned_cols=22 Identities=14% Similarity=0.244 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.|.|+|++|+||||+++.+...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999653
No 144
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.57 E-value=0.0018 Score=49.98 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+|++|+|+.|+|||||+..+-..
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~ 25 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRK 25 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHH
Confidence 579999999999999999999553
No 145
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.57 E-value=0.0016 Score=49.63 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhcc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
+|.|+|.+|+||||||+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999988753
No 146
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.56 E-value=0.0019 Score=51.66 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=23.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhccc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNNY 208 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~~ 208 (241)
..+|+|-||=|+||||||+.+-++-.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 57899999999999999999988643
No 147
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.54 E-value=0.0041 Score=56.92 Aligned_cols=56 Identities=21% Similarity=0.326 Sum_probs=42.5
Q ss_pred CcccchHHHHHHHHHHhc---CCCCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe
Q 042580 161 NIMGLEDEIEELLDLLIV---GEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG 220 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~~---~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~ 220 (241)
++.-..+-++++..||.. +....+++-+.|++|+||||.++.+.+. -.|+.+-|..
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~e----lg~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKE----LGFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHH----hCCeeEEecC
Confidence 344456668889999865 3334679999999999999999999986 2466677765
No 148
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.54 E-value=0.002 Score=50.20 Aligned_cols=22 Identities=23% Similarity=0.350 Sum_probs=19.1
Q ss_pred EEEEcCCCccHHHHHHHHHhcc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~~ 207 (241)
|.|.|..|+|||||++.+.+.-
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6799999999999999998865
No 149
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.54 E-value=0.011 Score=56.10 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=36.9
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
++++|.+..++.|.+++..+. -.+.+-++|..|+||||+|+.+-+.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKa 61 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKA 61 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999986643 2455569999999999999876663
No 150
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.53 E-value=0.002 Score=52.55 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|..|+|||||++.+--
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 46899999999999999999865
No 151
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.53 E-value=0.0025 Score=48.73 Aligned_cols=23 Identities=13% Similarity=0.327 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHhcc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
-|.|+|.+|+|||||++.+.+..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~ 24 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGH 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999997643
No 152
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.52 E-value=0.0026 Score=49.11 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=21.5
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+|+|+|..|+|||||+..+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999985
No 153
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.51 E-value=0.0022 Score=47.99 Aligned_cols=21 Identities=38% Similarity=0.406 Sum_probs=19.1
Q ss_pred EEEEcCCCccHHHHHHHHHhc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~ 206 (241)
|-++|..|+|||+||+.+...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999875
No 154
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=96.51 E-value=0.0026 Score=48.56 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=19.8
Q ss_pred EEEEcCCCccHHHHHHHHHhcc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~~ 207 (241)
|.++|.+|+|||||++.+.+..
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999988754
No 155
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.51 E-value=0.0067 Score=53.15 Aligned_cols=41 Identities=17% Similarity=0.083 Sum_probs=28.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe-CCC
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG-CEY 223 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~-~~~ 223 (241)
-.++.++|+.|+||||++.++-...........+..++ .+|
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 57999999999999999999987632121123455666 444
No 156
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.51 E-value=0.0026 Score=50.89 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..+|.|.|++|+||||+|+.+.+..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 5789999999999999999998854
No 157
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.50 E-value=0.0023 Score=51.79 Aligned_cols=24 Identities=33% Similarity=0.191 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 30 G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 30 GEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 158
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.49 E-value=0.0043 Score=53.56 Aligned_cols=38 Identities=26% Similarity=0.359 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 169 IEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 169 ~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...|++.+.....+..+|+|.|.+|+|||||+..+...
T Consensus 42 ~~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~ 79 (332)
T PRK09435 42 AQELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMH 79 (332)
T ss_pred HHHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34555555443456899999999999999999987664
No 159
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.49 E-value=0.0023 Score=50.02 Aligned_cols=24 Identities=17% Similarity=0.182 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...|.|+|+.|+|||||++.+-+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHH
Confidence 446999999999999999999875
No 160
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.49 E-value=0.0021 Score=49.52 Aligned_cols=21 Identities=19% Similarity=0.257 Sum_probs=17.8
Q ss_pred EEEEcCCCccHHHHHHHHHhc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~ 206 (241)
|+|+|..|+|||||++.+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 799999999999999999886
No 161
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.48 E-value=0.0082 Score=51.45 Aligned_cols=72 Identities=13% Similarity=0.214 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHhcCC-CCeEEEEEEcCCCccHHHHHHHHHhccccc--cC---CCeeEEEe-C-CCCHHHHHHHHHHHhC
Q 042580 166 EDEIEELLDLLIVGE-PSLFIVAIVGNSGFDKTNFAGEAYNNNYAK--NY---FDCRAWVG-C-EYYLHKVLDSIIKSVM 237 (241)
Q Consensus 166 ~~~~~~l~~~L~~~~-~~~~vI~IvG~gGvGKTTLak~v~~~~~v~--~~---F~~~~wV~-~-~~~~~~il~~Il~~l~ 237 (241)
+.-.+.|.+.|.+.+ ....+|+|.|.=|+||||+.+.+.+.-.-. .. +...+|-+ . +--...++..|..++.
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l~ 81 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQLE 81 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHHH
Confidence 344567777776643 678999999999999999999999874433 11 13345555 2 2334566666666654
No 162
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.47 E-value=0.0024 Score=51.36 Aligned_cols=24 Identities=25% Similarity=0.138 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+..-
T Consensus 27 G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 27 GEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999874
No 163
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.47 E-value=0.011 Score=48.12 Aligned_cols=48 Identities=17% Similarity=0.036 Sum_probs=35.2
Q ss_pred CCCCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe-CCCCHHHH
Q 042580 179 GEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG-CEYYLHKV 228 (241)
Q Consensus 179 ~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~-~~~~~~~i 228 (241)
+=..-.++-|+|.+|+|||+|+.++..+.. ..-..++|++ ..++...+
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~--~~~~~v~yi~~e~~~~~r~ 67 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAA--KNGKKVIYIDTEGLSPERF 67 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEECCCCCHHHH
Confidence 334568999999999999999999987632 2335678888 65555443
No 164
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=96.47 E-value=0.0057 Score=48.09 Aligned_cols=36 Identities=14% Similarity=0.034 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 170 EELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 170 ~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+++.|.-. .+..-|+|+|.+|+|||||++.+.++
T Consensus 7 ~~~~~~~~~~-~~~~ki~ilG~~~~GKStLi~~l~~~ 42 (190)
T cd00879 7 YNVLSSLGLY-NKEAKILFLGLDNAGKTTLLHMLKDD 42 (190)
T ss_pred HHHHHHhhcc-cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3344544222 23455599999999999999999874
No 165
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.47 E-value=0.0043 Score=54.98 Aligned_cols=47 Identities=23% Similarity=0.251 Sum_probs=36.8
Q ss_pred CCcccchHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV-----------GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~-----------~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++.|.+..++.|.+.+.- +-...+-+-++|++|+|||+||+.+.+.
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 3578999888888876531 1134577889999999999999999885
No 166
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.47 E-value=0.0025 Score=47.87 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=20.2
Q ss_pred EEEEcCCCccHHHHHHHHHhcc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~~ 207 (241)
|+|+|..|+|||||.+.+.+..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~ 23 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQ 23 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCC
Confidence 7899999999999999998863
No 167
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=96.46 E-value=0.0024 Score=49.08 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-|+|+|.+|+|||||++.+.++
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998765
No 168
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.46 E-value=0.0023 Score=49.45 Aligned_cols=25 Identities=16% Similarity=0.085 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+..-|+|+|.+|+|||||++.+.+.
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcC
Confidence 3556999999999999999999985
No 169
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.46 E-value=0.0016 Score=48.06 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=18.4
Q ss_pred EEEEcCCCccHHHHHHHHHhccccccCCC
Q 042580 186 VAIVGNSGFDKTNFAGEAYNNNYAKNYFD 214 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~~~v~~~F~ 214 (241)
+-++|.+|+||||||+.+-.. +...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~--~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS--LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH--TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH--cCCcee
Confidence 568999999999999999886 555664
No 170
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.46 E-value=0.0042 Score=55.67 Aligned_cols=46 Identities=30% Similarity=0.356 Sum_probs=35.3
Q ss_pred CcccchHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 161 NIMGLEDEIEELLDLLIV-----------GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~~-----------~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
++.|.+..+++|.+.+.- +-....-+.++|++|+|||+||+.|.+.
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 467888888888876631 1123456779999999999999999996
No 171
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=96.45 E-value=0.0027 Score=48.92 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++.|+|.+|+||||+.+.+-.-
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 689999999999999998877654
No 172
>PRK14527 adenylate kinase; Provisional
Probab=96.45 E-value=0.0027 Score=50.39 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+..+|.|+|++|+||||+|+.+.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4678999999999999999998754
No 173
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.45 E-value=0.0025 Score=51.49 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 29 GEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 174
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=96.45 E-value=0.0037 Score=54.33 Aligned_cols=47 Identities=26% Similarity=0.275 Sum_probs=38.1
Q ss_pred cccCCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHh
Q 042580 157 FKKRNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 157 ~~~~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
++-+.+||.++.+..|+..+.+ +.++-+-|.|..|+||||+|+.+++
T Consensus 14 ~pf~~ivGq~~~k~al~~~~~~--p~~~~vli~G~~GtGKs~~ar~~~~ 60 (350)
T CHL00081 14 FPFTAIVGQEEMKLALILNVID--PKIGGVMIMGDRGTGKSTTIRALVD 60 (350)
T ss_pred CCHHHHhChHHHHHHHHHhccC--CCCCeEEEEcCCCCCHHHHHHHHHH
Confidence 3556789999988888776655 3466666999999999999999976
No 175
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.44 E-value=0.0085 Score=50.63 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+..+|.|+|..|+|||||+..+.+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~ 127 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMR 127 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999999999886
No 176
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.44 E-value=0.0027 Score=53.73 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...+|+++|+.|+||||++.++....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999988763
No 177
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.44 E-value=0.0044 Score=52.90 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 169 IEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 169 ~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+++-+........+|+|+|.+|+|||||+..+...
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~ 57 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGME 57 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 34455544434456899999999999999999998774
No 178
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.43 E-value=0.0026 Score=50.29 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 179
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.43 E-value=0.0026 Score=49.91 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
-.+++|+|..|+|||||.+.+..
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 46899999999999999999964
No 180
>PRK08727 hypothetical protein; Validated
Probab=96.43 E-value=0.008 Score=49.34 Aligned_cols=54 Identities=19% Similarity=0.107 Sum_probs=34.1
Q ss_pred ccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe
Q 042580 163 MGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG 220 (241)
Q Consensus 163 vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~ 220 (241)
+|-.+....+..+... ....-+.|+|..|+|||.|++.+++. ...+....++++
T Consensus 23 ~~~~n~~~~~~~~~~~--~~~~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~ 76 (233)
T PRK08727 23 AAPDGLLAQLQALAAG--QSSDWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLP 76 (233)
T ss_pred CCcHHHHHHHHHHHhc--cCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEe
Confidence 3444444444444332 23456999999999999999999886 223323445555
No 181
>PRK06761 hypothetical protein; Provisional
Probab=96.42 E-value=0.0049 Score=51.93 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=22.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..+|.|.|++|+||||+++.+.+..
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999874
No 182
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=96.42 E-value=0.0051 Score=53.29 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=36.4
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHh
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
+.++|.+..+..|+-.+.+. ...-+.|.|..|+|||||++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~~--~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDP--KIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcCC--CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 56899999988887776653 366677999999999999999964
No 183
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.42 E-value=0.0072 Score=48.43 Aligned_cols=42 Identities=21% Similarity=0.180 Sum_probs=32.8
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHh
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
++++|.+..+..|.-.... .+-+-++|..|+|||+||+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG----~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG----GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC----C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC----CCCeEEECCCCCCHHHHHHHHHH
Confidence 5789999888887776654 36889999999999999999876
No 184
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.42 E-value=0.0034 Score=47.47 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..+|+++|..|+|||||++.+....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~ 27 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQK 27 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCc
Confidence 5679999999999999999987653
No 185
>PRK00698 tmk thymidylate kinase; Validated
Probab=96.41 E-value=0.003 Score=50.35 Aligned_cols=24 Identities=17% Similarity=0.079 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+|+|.|+.|+||||+++.+.+.
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~ 26 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKEL 26 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 186
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=96.41 E-value=0.0028 Score=48.32 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.8
Q ss_pred EEEEcCCCccHHHHHHHHHhcc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~~ 207 (241)
|.|+|.+|+|||||++.+.+..
T Consensus 3 i~v~G~~~vGKTsli~~l~~~~ 24 (161)
T cd04113 3 FIIIGSSGTGKSCLLHRFVENK 24 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999997754
No 187
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.41 E-value=0.0056 Score=55.22 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=36.4
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|+++.++.+...++.+ .-+-++|++|+|||+||+.+...
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHH
Confidence 35789999999998888664 34779999999999999999985
No 188
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.41 E-value=0.0032 Score=47.73 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.6
Q ss_pred EEEEcCCCccHHHHHHHHHhcc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~~ 207 (241)
|.|+|.+|+|||||++.+.++.
T Consensus 4 i~iiG~~~vGKTsl~~~~~~~~ 25 (162)
T cd04138 4 LVVVGAGGVGKSALTIQLIQNH 25 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999988754
No 189
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.41 E-value=0.0052 Score=56.21 Aligned_cols=46 Identities=15% Similarity=0.143 Sum_probs=38.0
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++||.+..+..|.+++..+. -.+.+-++|+.|+||||+|+.+-+.
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~ 61 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKC 61 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999996643 2456789999999999999888773
No 190
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.41 E-value=0.0074 Score=52.70 Aligned_cols=67 Identities=13% Similarity=-0.094 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhccccccCCCe-eEEEe---CCCCHHHHHHHHHHHhC
Q 042580 169 IEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDC-RAWVG---CEYYLHKVLDSIIKSVM 237 (241)
Q Consensus 169 ~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~-~~wV~---~~~~~~~il~~Il~~l~ 237 (241)
...+++.+..-. +-.-+.|+|..|+|||||++.+.+..... +=+. ++|+. ++-.+.++++.+...+.
T Consensus 120 ~~RvID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vv 190 (380)
T PRK12608 120 SMRVVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVY 190 (380)
T ss_pred hHhhhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEE
Confidence 345777775422 23455999999999999999988863221 2233 35555 88899999999877554
No 191
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.40 E-value=0.0035 Score=47.54 Aligned_cols=34 Identities=21% Similarity=0.154 Sum_probs=24.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG 220 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~ 220 (241)
++.|+|.+|+|||||++.+..... ..-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA--TKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH--hcCCEEEEEE
Confidence 478999999999999999977532 2223445554
No 192
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.40 E-value=0.0029 Score=49.56 Aligned_cols=24 Identities=29% Similarity=0.200 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+.-.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 26 GEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 193
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.40 E-value=0.0063 Score=50.03 Aligned_cols=24 Identities=8% Similarity=0.081 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+-|+|+.|+|||+|++.+++.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~ 68 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE 68 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999885
No 194
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=96.39 E-value=0.0033 Score=47.53 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=19.1
Q ss_pred EEEEcCCCccHHHHHHHHHhc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~ 206 (241)
|.|+|..|+|||||++.+.+.
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998764
No 195
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.39 E-value=0.003 Score=49.66 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 469999999999999999999874
No 196
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.39 E-value=0.008 Score=55.38 Aligned_cols=44 Identities=30% Similarity=0.284 Sum_probs=35.8
Q ss_pred CcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 161 NIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+++|.+..++.+...+.... ..-+-|+|..|+||||+|+.+++.
T Consensus 66 ~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999988775533 445578999999999999999863
No 197
>PRK08356 hypothetical protein; Provisional
Probab=96.38 E-value=0.0028 Score=50.44 Aligned_cols=23 Identities=30% Similarity=0.254 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
..+|.|+|++|+||||+|+.+-+
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999954
No 198
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.38 E-value=0.0053 Score=59.00 Aligned_cols=47 Identities=26% Similarity=0.362 Sum_probs=38.7
Q ss_pred CCcccchHHHHHHHHHHhc----CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV----GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~----~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+.+|.++.++.++++|.- +...-.++.++|++|+||||+++.+...
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~ 372 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA 372 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999988852 2234568999999999999999999874
No 199
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=96.38 E-value=0.003 Score=47.15 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhcc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
-|+++|.+|+|||||+..+....
T Consensus 3 ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 3 KIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999876
No 200
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.38 E-value=0.003 Score=51.34 Aligned_cols=23 Identities=35% Similarity=0.241 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=..++|+|+.|+|||||...+.-
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999986
No 201
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.38 E-value=0.0069 Score=52.63 Aligned_cols=46 Identities=20% Similarity=0.246 Sum_probs=37.7
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..++.|.+++..+. -.+.+-++|+.|+||||+|+.+...
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~ 59 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKA 59 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 367999999999999886643 3467789999999999999887654
No 202
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=96.37 E-value=0.0031 Score=47.31 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHhcc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~~ 207 (241)
|.++|.+|+|||||++.+.+..
T Consensus 3 i~~~G~~~~GKStl~~~l~~~~ 24 (159)
T cd00154 3 IVLIGDSGVGKTSLLLRFVDGK 24 (159)
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998764
No 203
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.37 E-value=0.016 Score=49.63 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=40.9
Q ss_pred HHhcCCCCeEEEEEEcCCCccHHHHHHHHHhcccccc----CCCeeEEEe--CCCCHHHHHHHHHHHh
Q 042580 175 LLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKN----YFDCRAWVG--CEYYLHKVLDSIIKSV 236 (241)
Q Consensus 175 ~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~----~F~~~~wV~--~~~~~~~il~~Il~~l 236 (241)
+|..+=..-.++-|+|.+|+|||||+-++.-+..... .=..++||+ .+|+...+.+ +++.+
T Consensus 87 ~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~ 153 (310)
T TIGR02236 87 LLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEAR 153 (310)
T ss_pred HhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHc
Confidence 3333435578899999999999999999876532211 113689999 7788876543 34433
No 204
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.37 E-value=0.0029 Score=52.00 Aligned_cols=24 Identities=29% Similarity=0.210 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 28 GEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 205
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=96.37 E-value=0.0032 Score=50.45 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+|+|+|+.|+||||.|+.+-+-
T Consensus 2 ~~iIglTG~igsGKStva~~~~~~ 25 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAEL 25 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHHc
Confidence 568999999999999999987664
No 206
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.003 Score=51.18 Aligned_cols=24 Identities=29% Similarity=0.213 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+..-
T Consensus 30 G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 30 GEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999885
No 207
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.36 E-value=0.0029 Score=47.77 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.3
Q ss_pred EEEEEEcCCCccHHHHHHHHHhcc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
+-|.++|..|+|||||++.+...+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEE 25 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCC
Confidence 357899999999999999999865
No 208
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.003 Score=51.76 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 26 GEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 209
>PLN02200 adenylate kinase family protein
Probab=96.36 E-value=0.0037 Score=51.40 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
....+|.|+|++|+||||+++.+.+.
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~ 66 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVET 66 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999998764
No 210
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.36 E-value=0.0034 Score=50.65 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.. .+++|+|..|+|||||++.+..-
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~ 46 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGL 46 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCC
Confidence 35 89999999999999999999874
No 211
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.36 E-value=0.0031 Score=51.08 Aligned_cols=24 Identities=21% Similarity=0.167 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999974
No 212
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.35 E-value=0.0033 Score=49.30 Aligned_cols=24 Identities=17% Similarity=0.040 Sum_probs=21.3
Q ss_pred EEEEEEcCCCccHHHHHHHHHhcc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.++.|+|..|+|||||++.+....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l 27 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALF 27 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 478999999999999999998743
No 213
>PRK13695 putative NTPase; Provisional
Probab=96.35 E-value=0.0031 Score=49.24 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998654
No 214
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.0032 Score=50.63 Aligned_cols=24 Identities=21% Similarity=0.126 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+.-.
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 215
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.34 E-value=0.0093 Score=51.53 Aligned_cols=49 Identities=22% Similarity=0.289 Sum_probs=42.4
Q ss_pred ccCCcccchHHHHHHHHHHhc----CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 158 KKRNIMGLEDEIEELLDLLIV----GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 158 ~~~~~vG~~~~~~~l~~~L~~----~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+..++|+++.++++++.+.. -+.+-+|+-.+|+.|.|||||+..+.+-
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~ 111 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRG 111 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999865 2466899999999999999999998874
No 216
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.34 E-value=0.0032 Score=50.75 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 28 G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 28 GEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 217
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.34 E-value=0.0097 Score=49.12 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
-..+.++|++|+||||+.|.|+.
T Consensus 27 gef~vliGpSGsGKTTtLkMINr 49 (309)
T COG1125 27 GEFLVLIGPSGSGKTTTLKMINR 49 (309)
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 56788999999999999999988
No 218
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.34 E-value=0.014 Score=47.42 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=35.0
Q ss_pred cCCCCeEEEEEEcCCCccHHHHHHHHHhcccccc----CCCeeEEEe--CCCCHHHHH
Q 042580 178 VGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKN----YFDCRAWVG--CEYYLHKVL 229 (241)
Q Consensus 178 ~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~----~F~~~~wV~--~~~~~~~il 229 (241)
.+=..-.++.|+|.+|+|||+|+..+.-.....+ .=..++|++ ..++...+.
T Consensus 14 GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 3435568999999999999999999876522111 003467888 556665443
No 219
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.33 E-value=0.0032 Score=51.71 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 27 GEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999864
No 220
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.32 E-value=0.0073 Score=55.98 Aligned_cols=49 Identities=18% Similarity=0.124 Sum_probs=34.3
Q ss_pred cCCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 159 KRNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 159 ~~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.+..+.+.+-.+.|.++.-....+-.+|.++|+.|+||||+|+.+...-
T Consensus 368 pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L 416 (568)
T PRK05537 368 IPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKL 416 (568)
T ss_pred CChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHh
Confidence 3344555555555555543334456799999999999999999998853
No 221
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.32 E-value=0.0034 Score=50.61 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 26 GEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 222
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.31 E-value=0.0034 Score=51.10 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+.--
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 26 GEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999864
No 223
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.31 E-value=0.006 Score=56.89 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=37.9
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++||.+..++.|.+++..+. -.+.+-++|..|+||||||+.+-+.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAka 61 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKS 61 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999987653 3466789999999999999988663
No 224
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.31 E-value=0.0052 Score=56.03 Aligned_cols=47 Identities=28% Similarity=0.302 Sum_probs=37.0
Q ss_pred CCcccchHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV-----------GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~-----------~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++.|.+..+++|.+.+.. +-...+-|-++|++|+|||++|+.+++.
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~e 239 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANS 239 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHh
Confidence 3577899999888887532 1123566889999999999999999996
No 225
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.31 E-value=0.0033 Score=55.31 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|+++|.+|+||||++.++...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~ 264 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQ 264 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHH
Confidence 4589999999999999999999764
No 226
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.31 E-value=0.004 Score=49.21 Aligned_cols=35 Identities=20% Similarity=0.131 Sum_probs=26.3
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHh
Q 042580 168 EIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 168 ~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
+..+++...... -..+.|+|..|+|||||++.+..
T Consensus 13 ~~~~~l~~~v~~---g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 13 LQAAYLWLAVEA---RKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred HHHHHHHHHHhC---CCEEEEECCCCCCHHHHHHHHHh
Confidence 444455544432 46899999999999999999886
No 227
>PRK14974 cell division protein FtsY; Provisional
Probab=96.30 E-value=0.012 Score=50.95 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=33.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe-CCCCHH--HHHHHHHHHh
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG-CEYYLH--KVLDSIIKSV 236 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~-~~~~~~--~il~~Il~~l 236 (241)
+..+|.++|+.|+||||++.++...-. ...+ .++.+. .+|... +-++.....+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~~Dt~R~~a~eqL~~~a~~l 194 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAAGDTFRAGAIEQLEEHAERL 194 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEecCCcCcHHHHHHHHHHHHHc
Confidence 478999999999999998888776422 2223 334465 555442 2244444444
No 228
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.30 E-value=0.0037 Score=48.25 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+|.|.|+.|+||||+|+.+-+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~ 23 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEK 23 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999764
No 229
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.29 E-value=0.0076 Score=51.01 Aligned_cols=45 Identities=22% Similarity=0.360 Sum_probs=30.5
Q ss_pred CcccchHHHHHHHHHHh---c-------C---CCCeEEEEEEcCCCccHHHHHHHHHh
Q 042580 161 NIMGLEDEIEELLDLLI---V-------G---EPSLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~---~-------~---~~~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.++|.+..+++|.++.. - + .....-+-++|++|+||||+|+.+..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQ 80 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHH
Confidence 47898888777665421 1 1 01123577999999999999966554
No 230
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.29 E-value=0.0058 Score=51.40 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe--CCCCHHHHH
Q 042580 169 IEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG--CEYYLHKVL 229 (241)
Q Consensus 169 ~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~--~~~~~~~il 229 (241)
-.+|+..|.....+..+|+|.|.+|+||+||.-.+-....-.+|=--++=|. ++|+--.||
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccc
Confidence 4567777766666799999999999999999988877643333322233444 666554444
No 231
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=96.29 E-value=0.0035 Score=47.69 Aligned_cols=22 Identities=18% Similarity=0.492 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHhcc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~~ 207 (241)
|.|+|.+|+|||||++.+.+..
T Consensus 3 v~v~G~~~~GKTtli~~l~~~~ 24 (164)
T smart00175 3 IILIGDSGVGKSSLLSRFTDGK 24 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
No 232
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.29 E-value=0.0036 Score=49.78 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999885
No 233
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.29 E-value=0.0063 Score=56.91 Aligned_cols=47 Identities=21% Similarity=0.177 Sum_probs=38.9
Q ss_pred CCcccchHHHHHHHHHHhcCC---CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGE---PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~---~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..+++|..||.... ..-+++.++|+.|+||||+++.+.+.
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999986532 23467999999999999999999875
No 234
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.29 E-value=0.013 Score=48.78 Aligned_cols=53 Identities=25% Similarity=0.200 Sum_probs=40.0
Q ss_pred CCCCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEeCCCCHHHHHHHHH
Q 042580 179 GEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVGCEYYLHKVLDSII 233 (241)
Q Consensus 179 ~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~~~~~~~~il~~Il 233 (241)
+=+.-+++.|+|.+|+|||+++.+.-.. ...+...++||+-.-+..+|+....
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~--~~~~ge~vlyvs~~e~~~~l~~~~~ 71 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYE--GAREGEPVLYVSTEESPEELLENAR 71 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHH--HHhcCCcEEEEEecCCHHHHHHHHH
Confidence 3366899999999999999999887776 4455888999993334455555443
No 235
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.28 E-value=0.0034 Score=50.56 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+.--
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999874
No 236
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.28 E-value=0.0036 Score=51.00 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+.--
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 469999999999999999999974
No 237
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=96.28 E-value=0.0031 Score=47.85 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=18.7
Q ss_pred EEEEcCCCccHHHHHHHHHh
Q 042580 186 VAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~ 205 (241)
|+++|..|+|||||.+.+.+
T Consensus 2 i~l~G~~g~GKTtL~~~l~~ 21 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTN 21 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhc
Confidence 78999999999999999993
No 238
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=96.28 E-value=0.0043 Score=47.28 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHhcc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~~ 207 (241)
|.|+|.+|+|||||++.+.+..
T Consensus 2 i~vvG~~~vGKtsl~~~~~~~~ 23 (162)
T PF00071_consen 2 IVVVGDSGVGKTSLINRLINGE 23 (162)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 7899999999999999988864
No 239
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.28 E-value=0.0036 Score=50.15 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 26 GEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999884
No 240
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.28 E-value=0.0039 Score=53.62 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=23.1
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...+|+++|++|+||||++.++....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 57899999999999999999997753
No 241
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.27 E-value=0.0037 Score=50.36 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+.-.
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999885
No 242
>PRK06620 hypothetical protein; Validated
Probab=96.27 E-value=0.0037 Score=50.68 Aligned_cols=24 Identities=29% Similarity=0.202 Sum_probs=21.6
Q ss_pred EEEEEEcCCCccHHHHHHHHHhcc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
+.+-|||++|+|||+|++.+.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 678999999999999999988764
No 243
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.27 E-value=0.0036 Score=51.30 Aligned_cols=24 Identities=21% Similarity=0.152 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+.-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 569999999999999999999864
No 244
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.27 E-value=0.0037 Score=50.65 Aligned_cols=24 Identities=38% Similarity=0.231 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+.--
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 245
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.0037 Score=50.65 Aligned_cols=24 Identities=21% Similarity=0.091 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 246
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.27 E-value=0.01 Score=53.76 Aligned_cols=43 Identities=16% Similarity=0.120 Sum_probs=30.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe-CCCCH
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG-CEYYL 225 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~-~~~~~ 225 (241)
-.||+++|+.|+||||++.++......+..-..+..|+ .+|.+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~Ri 299 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRI 299 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccch
Confidence 47999999999999999999997633222222345666 44533
No 247
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.0036 Score=51.42 Aligned_cols=24 Identities=29% Similarity=0.200 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999884
No 248
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.27 E-value=0.0041 Score=49.26 Aligned_cols=26 Identities=23% Similarity=0.130 Sum_probs=22.9
Q ss_pred EEEEEEcCCCccHHHHHHHHHhcccc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNNNYA 209 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~~~v 209 (241)
.+|+|.|..|+||||+++.+.+....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999986544
No 249
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.26 E-value=0.0033 Score=50.55 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+++|+|..|+|||||++.+..-
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999963
No 250
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.25 E-value=0.017 Score=49.58 Aligned_cols=56 Identities=16% Similarity=0.098 Sum_probs=39.0
Q ss_pred HHhcCCCCeEEEEEEcCCCccHHHHHHHHHhccccccCC----CeeEEEe--CCCCHHHHHH
Q 042580 175 LLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYF----DCRAWVG--CEYYLHKVLD 230 (241)
Q Consensus 175 ~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F----~~~~wV~--~~~~~~~il~ 230 (241)
+|..+=..-.++-|+|.+|+|||+|+-++.-+......+ ..++||+ .+|+...|.+
T Consensus 94 ~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~ 155 (317)
T PRK04301 94 LLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ 155 (317)
T ss_pred HhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH
Confidence 333343567889999999999999999987653221111 3688999 7788776653
No 251
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.25 E-value=0.0039 Score=50.50 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 26 GEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999864
No 252
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.24 E-value=0.015 Score=51.95 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+|.++|..|+||||++.++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999988764
No 253
>PRK09087 hypothetical protein; Validated
Probab=96.24 E-value=0.004 Score=50.93 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-..+.|||..|+|||+|++.++++
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~ 67 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREK 67 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999999999998865
No 254
>PRK13946 shikimate kinase; Provisional
Probab=96.23 E-value=0.0038 Score=49.27 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...|.++|+.|+||||+++.+-+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~ 33 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATM 33 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999886
No 255
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.23 E-value=0.0035 Score=55.58 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=23.4
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.-.+.|+|+|..|+|||||++.+.+.
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~ 242 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANI 242 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 34789999999999999999999875
No 256
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.23 E-value=0.0069 Score=56.91 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=38.2
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..+..|..++..+. -.+.+-++|..|+||||+|+.+.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~ 61 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKS 61 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 468999999999999987643 3467889999999999999988663
No 257
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.21 E-value=0.0079 Score=56.12 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=36.7
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHh
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
++++|.+..+..|.+++..+. -.+.+-++|..|+||||+|+.+-+
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk 60 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAK 60 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHH
Confidence 368999998888888887653 346778999999999999998833
No 258
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.21 E-value=0.012 Score=51.63 Aligned_cols=54 Identities=11% Similarity=0.147 Sum_probs=35.1
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe-CCCCH--HHHHHHHHHHh
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG-CEYYL--HKVLDSIIKSV 236 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~-~~~~~--~~il~~Il~~l 236 (241)
....+|+++|+.|+||||++.++......++ ..+.+|+ .+|.. .+-++...+.+
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~l 260 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKL 260 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcC
Confidence 3468999999999999999999886532222 2456676 55544 33444444433
No 259
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.21 E-value=0.004 Score=50.63 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+...
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 31 GETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 260
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.21 E-value=0.0065 Score=55.14 Aligned_cols=45 Identities=20% Similarity=0.246 Sum_probs=36.4
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHh
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.+++|.+...+.|.+.+..+. -.+-+-++|+.|+||||+|+.+-.
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk 57 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISL 57 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHH
Confidence 468999998888888776543 245788999999999999988865
No 261
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.20 E-value=0.0075 Score=55.06 Aligned_cols=46 Identities=17% Similarity=0.050 Sum_probs=37.7
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+.-+..|...+..+. -.+-+-++|+.|+||||+|+.+.+.
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~ 66 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKA 66 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHH
Confidence 367999998888888776542 3467889999999999999999874
No 262
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.20 E-value=0.0053 Score=54.36 Aligned_cols=26 Identities=12% Similarity=0.061 Sum_probs=23.1
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...-||+|.|..|+|||||++.+..-
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~l 235 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYL 235 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999653
No 263
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.20 E-value=0.0043 Score=49.65 Aligned_cols=24 Identities=25% Similarity=0.137 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+.--
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 24 GKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999874
No 264
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=96.20 E-value=0.0039 Score=47.77 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=18.1
Q ss_pred EEEEcCCCccHHHHHHHHHh
Q 042580 186 VAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~ 205 (241)
|.|+|..|+|||||.+.+..
T Consensus 2 i~~vG~~~~GKstLi~~l~~ 21 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKT 21 (167)
T ss_pred EEEEecCCCCHHHHHHHHhh
Confidence 78999999999999999854
No 265
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.20 E-value=0.0041 Score=51.72 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 27 GELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 266
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.20 E-value=0.0044 Score=49.44 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
....|+|+|.+|+|||||.+.+.+..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcch
Confidence 46789999999999999999998864
No 267
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.19 E-value=0.0042 Score=50.77 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 31 GEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 268
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.19 E-value=0.0086 Score=49.58 Aligned_cols=50 Identities=22% Similarity=0.259 Sum_probs=39.2
Q ss_pred cCCcccchHHHHH---HHHHHhc----CCCCeEEEEEEcCCCccHHHHHHHHHhccc
Q 042580 159 KRNIMGLEDEIEE---LLDLLIV----GEPSLFIVAIVGNSGFDKTNFAGEAYNNNY 208 (241)
Q Consensus 159 ~~~~vG~~~~~~~---l~~~L~~----~~~~~~vI~IvG~gGvGKTTLak~v~~~~~ 208 (241)
-++++|.+..+.+ |+++|.+ ++...+-|-.+|++|.|||.+|+.+-|..+
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~k 176 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAK 176 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccC
Confidence 3468998876654 6667755 245688899999999999999999999653
No 269
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.19 E-value=0.0042 Score=50.80 Aligned_cols=24 Identities=29% Similarity=0.185 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+..-
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 270
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.19 E-value=0.0043 Score=49.73 Aligned_cols=24 Identities=25% Similarity=0.120 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (204)
T PRK13538 27 GELVQIEGPNGAGKTSLLRILAGL 50 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 271
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=96.19 E-value=0.0049 Score=47.24 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..-|.|+|.+|+|||||+..+..+
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~ 26 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSG 26 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhC
Confidence 456889999999999999998654
No 272
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=96.19 E-value=0.0049 Score=46.88 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-|.|+|.+|+|||||+..+.++
T Consensus 3 ki~i~G~~~vGKTsl~~~~~~~ 24 (163)
T cd04136 3 KVVVLGSGGVGKSALTVQFVQG 24 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999887754
No 273
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.19 E-value=0.0084 Score=55.16 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=37.3
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..+..|..++..+. -.+.+-++|+.|+||||+|+.+-+.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~ 61 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKS 61 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999887643 2355679999999999999988654
No 274
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.19 E-value=0.0039 Score=51.75 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=22.9
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+-.++++||..|+|||||++.|..=
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L 62 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGL 62 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcC
Confidence 34678999999999999999999883
No 275
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=96.18 E-value=0.0041 Score=47.20 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=20.1
Q ss_pred EEEEcCCCccHHHHHHHHHhcc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~~ 207 (241)
|+|+|.+|+|||||++.+.+..
T Consensus 2 i~iiG~~~~GKssli~~~~~~~ 23 (158)
T cd00878 2 ILILGLDGAGKTTILYKLKLGE 23 (158)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998864
No 276
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=96.18 E-value=0.0041 Score=46.43 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhcc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
-|+|+|.+|+|||||++.+....
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~ 24 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEE 24 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCc
Confidence 37899999999999999987753
No 277
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.18 E-value=0.0043 Score=51.40 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+...
T Consensus 25 Ge~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 25 SEVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999885
No 278
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=96.18 E-value=0.0044 Score=47.57 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHhcc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~~ 207 (241)
|.|+|.+|+|||||++.+.+..
T Consensus 3 i~i~G~~~~GKSsli~~l~~~~ 24 (171)
T cd00157 3 IVVVGDGAVGKTCLLISYTTGK 24 (171)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 6799999999999999998764
No 279
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=96.17 E-value=0.0045 Score=46.86 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHhcc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~~ 207 (241)
|+|+|.+|+|||||.+.+.+..
T Consensus 3 i~i~G~~~~GKStli~~l~~~~ 24 (162)
T cd04123 3 VVLLGEGRVGKTSLVLRYVENK 24 (162)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999988754
No 280
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.17 E-value=0.0099 Score=52.10 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=38.5
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+...+.+.+++..+. -.+.+-++|+.|+||||+|+.+.+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~ 62 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARK 62 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 367899999999999987643 3468889999999999999998774
No 281
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.17 E-value=0.0044 Score=50.10 Aligned_cols=24 Identities=17% Similarity=0.094 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+..-
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999974
No 282
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=96.17 E-value=0.0045 Score=47.42 Aligned_cols=21 Identities=14% Similarity=0.374 Sum_probs=18.4
Q ss_pred EEEEcCCCccHHHHHHHHHhc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~ 206 (241)
|.|+|.+|+|||||++.+.++
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999887654
No 283
>PRK15453 phosphoribulokinase; Provisional
Probab=96.17 E-value=0.005 Score=51.74 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHh
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
+..+|+|.|-+|+||||+++.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998865
No 284
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.17 E-value=0.012 Score=45.09 Aligned_cols=45 Identities=13% Similarity=0.191 Sum_probs=29.3
Q ss_pred cchHHHHHHHHHHhc-CCCCeEEEEEEcCCCccHHHHHHHHHhccc
Q 042580 164 GLEDEIEELLDLLIV-GEPSLFIVAIVGNSGFDKTNFAGEAYNNNY 208 (241)
Q Consensus 164 G~~~~~~~l~~~L~~-~~~~~~vI~IvG~gGvGKTTLak~v~~~~~ 208 (241)
|.+.-++.|.+++.. ....-..|+++|++|+||+||.+.+..+..
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~~ 127 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKKV 127 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCCc
Confidence 334444555444321 112245678999999999999999988643
No 285
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.17 E-value=0.0045 Score=50.42 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASL 56 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999874
No 286
>PRK13948 shikimate kinase; Provisional
Probab=96.16 E-value=0.0048 Score=48.69 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+.|.++||.|+||||+++.+-+.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34688999999999999999999875
No 287
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.16 E-value=0.022 Score=46.03 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=28.8
Q ss_pred CCCCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe
Q 042580 179 GEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG 220 (241)
Q Consensus 179 ~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~ 220 (241)
+=..-.++-|.|.+|+|||||+.++..... ..=..++|++
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~--~~g~~v~yi~ 54 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETA--GQGKKVAYID 54 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEE
Confidence 335578999999999999999999876531 2223456666
No 288
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.15 E-value=0.0046 Score=50.58 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+..-
T Consensus 11 Ge~~~i~G~nGsGKSTLl~~l~Gl 34 (230)
T TIGR01184 11 GEFISLIGHSGCGKSTLLNLISGL 34 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 289
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.15 E-value=0.009 Score=53.18 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=28.6
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe-CCCCH
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG-CEYYL 225 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~-~~~~~ 225 (241)
.-.+|+++|..|+||||++.++-........-+....++ .++..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~ri 234 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRI 234 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcch
Confidence 357999999999999999998865321111123345555 44443
No 290
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.14 E-value=0.009 Score=55.98 Aligned_cols=46 Identities=22% Similarity=0.275 Sum_probs=37.4
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..+..|.+.+..+. -.+.+-++|..|+||||+|+.+.+.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~ 61 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKG 61 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999988886643 2355679999999999999988664
No 291
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.14 E-value=0.0043 Score=50.81 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 26 GEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999874
No 292
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.14 E-value=0.0045 Score=50.58 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+.--
T Consensus 12 Ge~~~i~G~nGsGKSTLl~~l~Gl 35 (230)
T TIGR02770 12 GEVLALVGESGSGKSLTCLAILGL 35 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999985
No 293
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.14 E-value=0.0095 Score=57.04 Aligned_cols=47 Identities=19% Similarity=0.318 Sum_probs=37.3
Q ss_pred CCcccchHHHHHHHHHHhcC-------CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVG-------EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~-------~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|.+..++.|.+.+... +....++-++|+.|+|||+||+.+.+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~ 507 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEA 507 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHH
Confidence 45789998888888877531 123457889999999999999999885
No 294
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.14 E-value=0.0042 Score=42.67 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+|.+.|.+|+||||++..+...
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~ 22 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAA 22 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998875
No 295
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.13 E-value=0.0039 Score=47.46 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+|+++|.+|+||||+++.+...
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~ 22 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITA 22 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999998775
No 296
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=96.13 E-value=0.0044 Score=48.09 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=20.6
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..|.|+|+.|+||||+++.+-+.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~ 25 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQA 25 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999999885
No 297
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=96.13 E-value=0.0044 Score=52.03 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=17.7
Q ss_pred eEEEEEEcCCCccHHHHHHHH
Q 042580 183 LFIVAIVGNSGFDKTNFAGEA 203 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v 203 (241)
.++|+|+|-|||||||++-.+
T Consensus 2 ~~vIav~~KGGVGKTT~a~nL 22 (275)
T PRK13233 2 TRKIAIYGKGGIGKSTTTQNT 22 (275)
T ss_pred ceEEEEEcCCCCcHHHHHHHH
Confidence 368999999999999987743
No 298
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.13 E-value=0.0046 Score=50.83 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 26 GEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999875
No 299
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=96.13 E-value=0.0055 Score=47.20 Aligned_cols=22 Identities=18% Similarity=0.394 Sum_probs=19.6
Q ss_pred EEEEcCCCccHHHHHHHHHhcc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~~ 207 (241)
|.++|.+|+|||||++.+.++.
T Consensus 4 i~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 4 IVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999987654
No 300
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.13 E-value=0.0047 Score=50.80 Aligned_cols=24 Identities=17% Similarity=0.069 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+.-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 28 GETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999875
No 301
>PRK13768 GTPase; Provisional
Probab=96.13 E-value=0.005 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=19.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
..+|.|+|.+|+||||++..+..
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~ 24 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSD 24 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHH
Confidence 46899999999999998776654
No 302
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.13 E-value=0.0045 Score=49.45 Aligned_cols=21 Identities=33% Similarity=0.384 Sum_probs=19.6
Q ss_pred EEEEEEcCCCccHHHHHHHHH
Q 042580 184 FIVAIVGNSGFDKTNFAGEAY 204 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~ 204 (241)
.+++|+|..|+|||||++.++
T Consensus 23 g~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 23 GLTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 388999999999999999987
No 303
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.12 E-value=0.012 Score=47.47 Aligned_cols=50 Identities=18% Similarity=0.112 Sum_probs=31.6
Q ss_pred EEEEEcCCCccHHHHHHHHHhccc-----cccCCC-eeEEEe-CCCCHHHHHHHHHH
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNNNY-----AKNYFD-CRAWVG-CEYYLHKVLDSIIK 234 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~~~-----v~~~F~-~~~wV~-~~~~~~~il~~Il~ 234 (241)
+..|+|++|.||||++..+-.... ....-+ ..++++ .+-.+..++..+.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 788999999999987766666531 112233 355666 77777777777766
No 304
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.12 E-value=0.0049 Score=49.59 Aligned_cols=24 Identities=25% Similarity=0.124 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+...
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 26 GEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999985
No 305
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=96.12 E-value=0.0049 Score=46.91 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHhcc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
-|.|+|.+|+|||||++.+.++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (163)
T cd01860 3 KLVLLGDSSVGKSSLVLRFVKNE 25 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998864
No 306
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.12 E-value=0.0048 Score=50.35 Aligned_cols=24 Identities=25% Similarity=0.091 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+..-
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 26 GEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 307
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.12 E-value=0.012 Score=43.31 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=36.0
Q ss_pred CCcccchHHHHHHHHHHhc-----CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV-----GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~-----~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|..-..+.+++.|.+ ...+.-|++..|..|+|||.+++.|-++
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 4578877666666666543 3567899999999999999988777665
No 308
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.11 E-value=0.0047 Score=51.07 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
-.+++|+|+.|.|||||+|.+..
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLG 52 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILG 52 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 37899999999999999999998
No 309
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=96.11 E-value=0.01 Score=46.69 Aligned_cols=37 Identities=16% Similarity=0.035 Sum_probs=26.6
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 169 IEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 169 ~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+..+..++ ..-.+..-|.|+|.+|+|||||++.+..+
T Consensus 4 ~~~~~~~~-~~~~~~~~i~ivG~~~~GKTsli~~l~~~ 40 (184)
T smart00178 4 FYDILASL-GLWNKHAKILFLGLDNAGKTTLLHMLKND 40 (184)
T ss_pred HHHHHHHh-ccccccCEEEEECCCCCCHHHHHHHHhcC
Confidence 45566644 21123466789999999999999998875
No 310
>PRK10908 cell division protein FtsE; Provisional
Probab=96.10 E-value=0.005 Score=49.95 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.=.+++|+|..|+|||||++.+.--
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3578999999999999999999874
No 311
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=96.09 E-value=0.0047 Score=47.39 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=19.2
Q ss_pred EEEEcCCCccHHHHHHHHHhc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~ 206 (241)
|+|+|..|+|||||++.+.+.
T Consensus 3 v~ivG~~~~GKStl~~~l~~~ 23 (170)
T cd01898 3 VGLVGLPNAGKSTLLSAISNA 23 (170)
T ss_pred eEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999853
No 312
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.09 E-value=0.0052 Score=49.32 Aligned_cols=24 Identities=21% Similarity=0.072 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+.--
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 313
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.09 E-value=0.0052 Score=49.45 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+.--
T Consensus 26 G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 26 GEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 314
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.09 E-value=0.0051 Score=50.62 Aligned_cols=24 Identities=21% Similarity=0.108 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+.-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (242)
T cd03295 27 GEFLVLIGPSGSGKTTTMKMINRL 50 (242)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 315
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.09 E-value=0.0051 Score=51.29 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 38 Ge~~~I~G~NGsGKSTLlk~l~Gl 61 (257)
T PRK11247 38 GQFVAVVGRSGCGKSTLLRLLAGL 61 (257)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 316
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=96.08 E-value=0.0052 Score=46.67 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHh
Q 042580 185 IVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~ 205 (241)
+|+|+|..|+|||||.+.+.+
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~ 22 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTG 22 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhC
Confidence 689999999999999999875
No 317
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.08 E-value=0.0052 Score=49.66 Aligned_cols=24 Identities=17% Similarity=0.068 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+.--
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 31 GEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 318
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=96.08 E-value=0.0058 Score=46.81 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=17.6
Q ss_pred EEEEcCCCccHHHHHHHHHh
Q 042580 186 VAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~ 205 (241)
|.|+|.+|+|||||+....+
T Consensus 2 i~vvG~~~~GKtsli~~~~~ 21 (165)
T cd04146 2 IAVLGASGVGKSALVVRFLT 21 (165)
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 78999999999999977654
No 319
>PRK12377 putative replication protein; Provisional
Probab=96.08 E-value=0.0099 Score=49.26 Aligned_cols=36 Identities=17% Similarity=-0.006 Sum_probs=27.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG 220 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~ 220 (241)
...+.++|..|+|||+||..|.+.. ....-.+++++
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l--~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRL--LAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEEE
Confidence 4678999999999999999999973 33333356665
No 320
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.08 E-value=0.0058 Score=48.17 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++|.|+|+.|+|||||++.+...
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~ 25 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQE 25 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999886
No 321
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.07 E-value=0.012 Score=52.25 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+|.++|++|+||||++.++...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999864
No 322
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.07 E-value=0.0053 Score=50.86 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|..|+|||||++.+..
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14242 32 NQVTALIGPSGCGKSTFLRCLNR 54 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999984
No 323
>PRK13236 nitrogenase reductase; Reviewed
Probab=96.07 E-value=0.0059 Score=52.01 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=20.6
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHh
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.+.++|++.|-|||||||.+-.+--
T Consensus 4 ~~~~~~~~~GKGGVGKTt~a~NLA~ 28 (296)
T PRK13236 4 ENIRQIAFYGKGGIGKSTTSQNTLA 28 (296)
T ss_pred cCceEEEEECCCcCCHHHHHHHHHH
Confidence 3579999999999999997666544
No 324
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.06 E-value=0.022 Score=49.02 Aligned_cols=60 Identities=13% Similarity=0.002 Sum_probs=39.8
Q ss_pred HhcCCCCeEEEEEEcCCCccHHHHHHHHHhccccc---c-CCCeeEEEe--CCCCHHHHHHHHHHHh
Q 042580 176 LIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAK---N-YFDCRAWVG--CEYYLHKVLDSIIKSV 236 (241)
Q Consensus 176 L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~---~-~F~~~~wV~--~~~~~~~il~~Il~~l 236 (241)
|..+=..-.++-|+|.+|+|||||+..+.-+.... . .-..++|++ ..|+...+ ..+++.+
T Consensus 89 l~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~ 154 (316)
T TIGR02239 89 LGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERY 154 (316)
T ss_pred hcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHc
Confidence 43443567899999999999999999887542221 1 223578998 65777664 3344443
No 325
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.06 E-value=0.01 Score=55.04 Aligned_cols=46 Identities=24% Similarity=0.196 Sum_probs=38.1
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+...+.|..++..+. -.+.+-++|+.|+||||+|+.+.+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~ 58 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARS 58 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999987643 3456789999999999999988764
No 326
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.06 E-value=0.0054 Score=48.67 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+...
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999963
No 327
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.06 E-value=0.0056 Score=48.79 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 26 GEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999999885
No 328
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.06 E-value=0.0052 Score=50.76 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|..|+|||||++.+.-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G 49 (247)
T TIGR00972 27 NQVTALIGPSGCGKSTLLRSLNR 49 (247)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999975
No 329
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.05 E-value=0.0058 Score=47.62 Aligned_cols=24 Identities=29% Similarity=0.216 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+.--
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999999874
No 330
>PRK06851 hypothetical protein; Provisional
Probab=96.05 E-value=0.12 Score=45.38 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=30.2
Q ss_pred ccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhccc
Q 042580 163 MGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNY 208 (241)
Q Consensus 163 vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~ 208 (241)
-|.-...+.|.+ .--+++.|.|.+|+|||||++++.....
T Consensus 200 ~G~~s~~~~l~~------~~~~~~~i~G~pG~GKstl~~~i~~~a~ 239 (367)
T PRK06851 200 KGAVDFVPSLTE------GVKNRYFLKGRPGTGKSTMLKKIAKAAE 239 (367)
T ss_pred CcHHhhHHhHhc------ccceEEEEeCCCCCcHHHHHHHHHHHHH
Confidence 355555555542 2368899999999999999999999743
No 331
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.04 E-value=0.0057 Score=48.84 Aligned_cols=25 Identities=16% Similarity=0.092 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.-.+++|+|..|+|||||++.+...
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999999885
No 332
>PRK07429 phosphoribulokinase; Provisional
Probab=96.04 E-value=0.0064 Score=52.46 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=23.5
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+.-+|+|.|..|+|||||++.+..-
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~l 31 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADL 31 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhH
Confidence 46789999999999999999999875
No 333
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.04 E-value=0.006 Score=47.44 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
++.++|++|+||||++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7889999999999998887653
No 334
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=96.04 E-value=0.0055 Score=51.10 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=19.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.++|+|+|-|||||||++..+-.
T Consensus 2 ~~~iav~~KGGvGKTT~a~nLA~ 24 (264)
T PRK13231 2 MKKIAIYGKGGIGKSTTVSNMAA 24 (264)
T ss_pred ceEEEEECCCCCcHHHHHHHHhc
Confidence 36899999999999998887655
No 335
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.03 E-value=0.0059 Score=46.20 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999885
No 336
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.03 E-value=0.0057 Score=49.12 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.=.+++|+|..|+|||||++.+...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999885
No 337
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=96.03 E-value=0.0065 Score=46.64 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-|.++|.+|+|||||.+.+.+.
T Consensus 3 kv~~vG~~~vGKTsli~~~~~~ 24 (165)
T cd04140 3 RVVVFGAGGVGKSSLVLRFVKG 24 (165)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999988764
No 338
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.03 E-value=0.0056 Score=49.70 Aligned_cols=24 Identities=33% Similarity=0.358 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+.--
T Consensus 34 Ge~~~l~G~nGsGKSTLl~~i~G~ 57 (224)
T TIGR02324 34 GECVALSGPSGAGKSTLLKSLYAN 57 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999974
No 339
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.03 E-value=0.0055 Score=50.65 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+.-.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 29 NTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999864
No 340
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.02 E-value=0.012 Score=52.12 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=37.2
Q ss_pred CCcccchHHHHHHHHHHhcCCC--------CeEEEEEEcCCCccHHHHHHHHHh
Q 042580 160 RNIMGLEDEIEELLDLLIVGEP--------SLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~--------~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
++++|.+..++.|...+..+.. -.+-+-++|+.|+||||+|+.+..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~ 58 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAA 58 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 3688999999999999866421 356688999999999999998754
No 341
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.02 E-value=0.011 Score=55.10 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=37.9
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..++.|..++..+. -.+.+-++|..|+||||+|+.+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~ 61 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKA 61 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999988887643 3456779999999999999988764
No 342
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.02 E-value=0.006 Score=47.87 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+.-.
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~ 48 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGL 48 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999985
No 343
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=96.02 E-value=0.0058 Score=46.63 Aligned_cols=21 Identities=33% Similarity=0.453 Sum_probs=18.7
Q ss_pred EEEEcCCCccHHHHHHHHHhc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~ 206 (241)
|.|+|.+|+|||||++.+.++
T Consensus 3 i~vvG~~~~GKtsl~~~l~~~ 23 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHSN 23 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999988653
No 344
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.02 E-value=0.0073 Score=47.50 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+|.|+|.+|+||||||+.+...
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999875
No 345
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.02 E-value=0.0057 Score=49.67 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=20.5
Q ss_pred EEEEEEcCCCccHHHHHHHHHh
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAE 24 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999985
No 346
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.01 E-value=0.0061 Score=47.23 Aligned_cols=24 Identities=21% Similarity=0.058 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+.--
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999985
No 347
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.01 E-value=0.0061 Score=47.50 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999884
No 348
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=96.01 E-value=0.0054 Score=48.27 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++|.|+|+.|+|||||++.+...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~ 25 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQE 25 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999874
No 349
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.01 E-value=0.0058 Score=50.07 Aligned_cols=24 Identities=29% Similarity=0.248 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (237)
T cd03252 28 GEVVGIVGRSGSGKSTLTKLIQRF 51 (237)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999864
No 350
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.00 E-value=0.0057 Score=48.98 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhccc
Confidence 469999999999999999999885
No 351
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=96.00 E-value=0.006 Score=46.75 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=20.6
Q ss_pred EEEEEEcCCCccHHHHHHHHHhcc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.-|.|+|.+|+|||||...+.+..
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~ 26 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDT 26 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 347899999999999999998753
No 352
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.00 E-value=0.011 Score=55.17 Aligned_cols=45 Identities=18% Similarity=0.061 Sum_probs=36.3
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHh
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.+++|.+..+..|.+.+..+. -.+-+-++|+.|+||||+|+.+-+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk 60 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAK 60 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHH
Confidence 368999998998888886542 345688999999999999977665
No 353
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.99 E-value=0.012 Score=52.43 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=34.2
Q ss_pred CcccchHHHHHHHHHHhc-------C-----C--CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 161 NIMGLEDEIEELLDLLIV-------G-----E--PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~~-------~-----~--~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++|.+..++.|...+.. . + ....-|-++|+.|+|||+||+.+.+.
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~ 131 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARI 131 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 489999988887655421 1 0 12356889999999999999999763
No 354
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.99 E-value=0.012 Score=57.32 Aligned_cols=47 Identities=15% Similarity=0.275 Sum_probs=37.1
Q ss_pred CCcccchHHHHHHHHHHhcC-------CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVG-------EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~-------~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|.+..+..|...+... +....++.++|+.|+|||+||+.+.+.
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~ 621 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANF 621 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35889999988888877531 222467889999999999999999874
No 355
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.99 E-value=0.0062 Score=51.74 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+|-++|.+|+||||+|+.+.+.
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~ 25 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAK 25 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHH
Confidence 357889999999999999998754
No 356
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=95.99 E-value=0.006 Score=50.65 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+..-
T Consensus 30 Ge~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 30 GKILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999999974
No 357
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=95.99 E-value=0.006 Score=50.07 Aligned_cols=24 Identities=25% Similarity=0.113 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+...
T Consensus 47 Ge~~~i~G~NGsGKSTLl~~i~Gl 70 (236)
T cd03267 47 GEIVGFIGPNGAGKTTTLKILSGL 70 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 358
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=95.98 E-value=0.0061 Score=50.71 Aligned_cols=24 Identities=21% Similarity=0.237 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+.-.
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 30 RSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999964
No 359
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=95.98 E-value=0.0062 Score=49.10 Aligned_cols=24 Identities=33% Similarity=0.242 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.++-.
T Consensus 24 Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (213)
T TIGR01277 24 GEIVAIMGPSGAGKSTLLNLIAGF 47 (213)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 568999999999999999999985
No 360
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=95.98 E-value=0.0056 Score=53.07 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHHh
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.++++.|++|+|||||.+.|--
T Consensus 32 ef~~lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 32 EFVTLLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999865
No 361
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=95.98 E-value=0.0067 Score=46.74 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=19.3
Q ss_pred EEEEcCCCccHHHHHHHHHhc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~ 206 (241)
|.|+|.+|+|||||.+.+.+.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999875
No 362
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.98 E-value=0.0066 Score=46.90 Aligned_cols=24 Identities=17% Similarity=0.135 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||.+.+.-.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 363
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.97 E-value=0.0061 Score=50.41 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHH
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAY 204 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~ 204 (241)
-.+++|+|..|.|||||++.+.
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14245 29 KSVVAFIGPSGCGKSTFLRLFN 50 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999995
No 364
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.97 E-value=0.0062 Score=50.68 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
-.+++|+|..|+|||||++.|.-
T Consensus 38 Ge~~~l~G~nGsGKSTLl~~l~G 60 (259)
T PRK14274 38 NEVTAIIGPSGCGKSTFIKTLNL 60 (259)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999974
No 365
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=95.97 E-value=0.0061 Score=50.43 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|..|+|||||++.+.-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~G 53 (252)
T PRK14239 31 NEITALIGPSGSGKSTLLRSINR 53 (252)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999964
No 366
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.96 E-value=0.0098 Score=56.98 Aligned_cols=47 Identities=23% Similarity=0.258 Sum_probs=36.5
Q ss_pred CCcccchHHHHHHHHHHhc---C--------CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV---G--------EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~---~--------~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+++.|.+..++.|.+++.. . -...+-|-++|++|+||||||+.+.+.
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH
Confidence 3578999999888887632 1 123456889999999999999999885
No 367
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=95.96 E-value=0.0057 Score=51.15 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+..-
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 37 GKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 469999999999999999999974
No 368
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.96 E-value=0.0063 Score=50.41 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~Gl 53 (252)
T PRK14256 30 NSVTAIIGPSGCGKSTVLRSINRM 53 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 458999999999999999999864
No 369
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=95.96 E-value=0.0063 Score=50.28 Aligned_cols=24 Identities=33% Similarity=0.200 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+...
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 29 GEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999864
No 370
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=95.96 E-value=0.0064 Score=50.40 Aligned_cols=24 Identities=25% Similarity=0.217 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+..-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (255)
T PRK11300 31 QEIVSLIGPNGAGKTTVFNCLTGF 54 (255)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCC
Confidence 578999999999999999999974
No 371
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.96 E-value=0.012 Score=54.94 Aligned_cols=46 Identities=20% Similarity=0.241 Sum_probs=38.3
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..+..|.+++..+. -..-+-++|+.|+||||+|+.+.+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~ 69 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARA 69 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999887653 3456889999999999999998763
No 372
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.96 E-value=0.0064 Score=47.79 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+..-
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 26 GEIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999984
No 373
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.96 E-value=0.0063 Score=50.09 Aligned_cols=24 Identities=29% Similarity=0.198 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+..-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (241)
T PRK14250 29 GAIYTIVGPSGAGKSTLIKLINRL 52 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 374
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.95 E-value=0.0068 Score=53.25 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+.-+|+|+|..|+|||||+..+...
T Consensus 4 ~~~~i~i~G~~gsGKTTl~~~l~~~ 28 (369)
T PRK14490 4 HPFEIAFCGYSGSGKTTLITALVRR 28 (369)
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999975
No 375
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=95.95 E-value=0.0061 Score=50.10 Aligned_cols=24 Identities=25% Similarity=0.106 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+...
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 29 GEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999985
No 376
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=95.95 E-value=0.0093 Score=54.50 Aligned_cols=48 Identities=25% Similarity=0.371 Sum_probs=34.9
Q ss_pred CCcccchHHHHHHHHHHh---c-------CCCCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 160 RNIMGLEDEIEELLDLLI---V-------GEPSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~---~-------~~~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.+++|.+..++++.+++. . +....+-+-++|++|+|||+||+.+.+..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 467898887777666543 1 11234457899999999999999998853
No 377
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.95 E-value=0.0069 Score=47.11 Aligned_cols=24 Identities=33% Similarity=0.180 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|.|||||++.+..-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999999884
No 378
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=95.94 E-value=0.0064 Score=49.93 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+...
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~ 50 (240)
T PRK09493 27 GEVVVIIGPSGSGKSTLLRCINKL 50 (240)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 379
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=95.94 E-value=0.0062 Score=46.65 Aligned_cols=23 Identities=13% Similarity=0.271 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHhcc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.|.|+|..|+|||||++.+.+..
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~ 24 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAK 24 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998854
No 380
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.94 E-value=0.0064 Score=49.59 Aligned_cols=25 Identities=16% Similarity=0.224 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.=.+++|+|..|+|||||++.+..-
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3569999999999999999999874
No 381
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=95.94 E-value=0.0065 Score=46.93 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=19.1
Q ss_pred EEEEcCCCccHHHHHHHHHhc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~ 206 (241)
|.++|.+|+|||||++.+.+.
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~ 22 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE 22 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999998764
No 382
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.93 E-value=0.0064 Score=50.96 Aligned_cols=24 Identities=25% Similarity=0.117 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+.--
T Consensus 50 Ge~~~l~G~nGsGKSTLl~~L~Gl 73 (269)
T cd03294 50 GEIFVIMGLSGSGKSTLLRCINRL 73 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 469999999999999999999874
No 383
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.93 E-value=0.0069 Score=47.41 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+.-.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999885
No 384
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.93 E-value=0.013 Score=53.42 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.-.+|+|+|..|+||||++.++...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3589999999999999999888764
No 385
>PRK05642 DNA replication initiation factor; Validated
Probab=95.93 E-value=0.021 Score=46.96 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+.|||..|+|||.|++.+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~ 68 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLR 68 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 467899999999999999999875
No 386
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=95.93 E-value=0.0059 Score=55.58 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|||..|+||||||+.+-.
T Consensus 317 GE~lglVGeSGsGKSTlar~i~g 339 (539)
T COG1123 317 GETLGLVGESGSGKSTLARILAG 339 (539)
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45899999999999999999987
No 387
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=95.93 E-value=0.0077 Score=46.50 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=20.7
Q ss_pred EEEEEEcCCCccHHHHHHHHHhcc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.-|.++|.+|+|||||...+....
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~ 26 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGR 26 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 458999999999999999986643
No 388
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.93 E-value=0.0056 Score=46.33 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..-|-|.|.+|+|||||+..|-.-
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHH
Confidence 456789999999999999999864
No 389
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.92 E-value=0.0061 Score=49.94 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=19.5
Q ss_pred EEEEcCCCccHHHHHHHHHhc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~ 206 (241)
|.|+|++|+||||+|+.+-+.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999775
No 390
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.92 E-value=0.012 Score=48.08 Aligned_cols=44 Identities=27% Similarity=0.268 Sum_probs=34.8
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHh
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.++||-++.++.|.-...+++ ..-+-|.||+|+||||=+..+.+
T Consensus 27 ~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHH
Confidence 468999998888877666654 77888999999999996655544
No 391
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=95.91 E-value=0.0066 Score=50.28 Aligned_cols=24 Identities=25% Similarity=0.148 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (252)
T TIGR03005 26 GEKVALIGPSGSGKSTILRILMTL 49 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999884
No 392
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.91 E-value=0.0063 Score=51.06 Aligned_cols=24 Identities=17% Similarity=0.191 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+.-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (271)
T PRK13638 27 SPVTGLVGANGCGKSTLFMNLSGL 50 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 458999999999999999999863
No 393
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.91 E-value=0.007 Score=49.29 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHh
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.--.|+|+|..|+|||||.|.++.
T Consensus 29 ~GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 29 QGEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhc
Confidence 356899999999999999999987
No 394
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=95.91 E-value=0.0066 Score=51.81 Aligned_cols=24 Identities=17% Similarity=0.055 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 19 Ge~~~l~G~NGaGKSTLl~~l~Gl 42 (302)
T TIGR01188 19 GEVFGFLGPNGAGKTTTIRMLTTL 42 (302)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 395
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=95.91 E-value=0.0068 Score=50.51 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+.--
T Consensus 39 Ge~~~i~G~nGsGKSTLl~~l~Gl 62 (260)
T PRK10744 39 NQVTAFIGPSGCGKSTLLRTFNRM 62 (260)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999854
No 396
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=95.91 E-value=0.0079 Score=45.97 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-|.|+|.+|+|||||+..+.+.
T Consensus 3 ki~~~G~~~~GKTsli~~~~~~ 24 (164)
T cd04175 3 KLVVLGSGGVGKSALTVQFVQG 24 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999887654
No 397
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=95.91 E-value=0.0069 Score=48.99 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.-.+++|+|..|+|||||++.+..-
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~i~G~ 53 (220)
T cd03245 29 AGEKVAIIGRVGSGKSTLLKLLAGL 53 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999999874
No 398
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.91 E-value=0.0065 Score=51.18 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+.--
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~i~Gl 56 (280)
T PRK13649 33 GSYTAFIGHTGSGKSTIMQLLNGL 56 (280)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 399
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=95.90 E-value=0.0071 Score=48.33 Aligned_cols=24 Identities=17% Similarity=0.050 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||.+.+..-
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 26 GEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 400
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=95.90 E-value=0.0067 Score=52.39 Aligned_cols=24 Identities=29% Similarity=0.176 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+..-
T Consensus 33 Ge~~~lvG~sGsGKSTL~~~l~Gl 56 (326)
T PRK11022 33 GEVVGIVGESGSGKSVSSLAIMGL 56 (326)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 468999999999999999999884
No 401
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.90 E-value=0.01 Score=51.67 Aligned_cols=24 Identities=13% Similarity=0.188 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+|.|+|+.|+||||+++.+.+.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~ 145 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDY 145 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 578999999999999999998874
No 402
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=95.89 E-value=0.0067 Score=50.84 Aligned_cols=24 Identities=33% Similarity=0.271 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (269)
T PRK11831 33 GKITAIMGPSGIGKTTLLRLIGGQ 56 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 403
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=95.89 E-value=0.0068 Score=50.89 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~Gl 56 (272)
T PRK15056 33 GSIAALVGVNGSGKSTLFKALMGF 56 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 404
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.89 E-value=0.0072 Score=48.61 Aligned_cols=24 Identities=33% Similarity=0.213 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 24 Ge~~~l~G~nGsGKSTLl~~l~gl 47 (211)
T cd03298 24 GEITAIVGPSGSGKSTLLNLIAGF 47 (211)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 405
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.89 E-value=0.0071 Score=49.42 Aligned_cols=24 Identities=29% Similarity=0.184 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+.--
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPRF 51 (234)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999864
No 406
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=95.89 E-value=0.007 Score=50.30 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.=.+++|+|..|+|||||++.+...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 54 (257)
T PRK10619 30 AGDVISIIGSSGSGKSTFLRCINFL 54 (257)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999985
No 407
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.89 E-value=0.0068 Score=51.34 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 37 Ge~~~l~G~nGsGKSTLl~~l~Gl 60 (289)
T PRK13645 37 NKVTCVIGTTGSGKSTMIQLTNGL 60 (289)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999874
No 408
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.88 E-value=0.25 Score=45.64 Aligned_cols=48 Identities=23% Similarity=0.187 Sum_probs=38.7
Q ss_pred cCCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 159 KRNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 159 ~~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...++|....+.++.+.+..-...-.-|-|+|..|+|||++|+.|++.
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHh
Confidence 457899999999998887553233445679999999999999999986
No 409
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=95.88 E-value=0.0076 Score=49.05 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 33 Ge~~~l~G~nGsGKSTLlk~l~G~ 56 (226)
T cd03234 33 GQVMAILGSSGSGKTTLLDAISGR 56 (226)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCc
Confidence 468999999999999999999874
No 410
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.88 E-value=0.023 Score=46.50 Aligned_cols=48 Identities=15% Similarity=0.183 Sum_probs=29.9
Q ss_pred CeEEEEEEcCCCccHHHHH-HHHHhccccccCCCeeEEEeCCCCHHHHHHHH
Q 042580 182 SLFIVAIVGNSGFDKTNFA-GEAYNNNYAKNYFDCRAWVGCEYYLHKVLDSI 232 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLa-k~v~~~~~v~~~F~~~~wV~~~~~~~~il~~I 232 (241)
.-.++.|.|..|+|||||+ +.+++- .++. ..+++++..-+..++++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~--~~~g-~~~~yi~~e~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF--LQNG-YSVSYVSTQLTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhCC-CcEEEEeCCCCHHHHHHHH
Confidence 3569999999999999997 555542 2222 2346666222345555554
No 411
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.88 E-value=0.0084 Score=50.10 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHh
Q 042580 168 EIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 168 ~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
-++.+..++..+ .-|-++|.+|+|||+||+.+.+
T Consensus 10 l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 10 VTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred HHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHH
Confidence 344555555432 2344899999999999999986
No 412
>PRK00089 era GTPase Era; Reviewed
Probab=95.87 E-value=0.008 Score=50.90 Aligned_cols=25 Identities=24% Similarity=0.270 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+...|+|+|.+|+|||||.+.+...
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~ 28 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQ 28 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999998764
No 413
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.87 E-value=0.0073 Score=49.42 Aligned_cols=24 Identities=33% Similarity=0.245 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+..-
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~i~Gl 50 (236)
T cd03253 27 GKKVAIVGPSGSGKSTILRLLFRF 50 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999974
No 414
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.87 E-value=0.0072 Score=49.95 Aligned_cols=23 Identities=35% Similarity=0.378 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|..|+|||||++.+.-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14262 29 NQITAIIGPSGCGKTTLLRSINR 51 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999994
No 415
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=95.86 E-value=0.0073 Score=50.23 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+..-
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (258)
T PRK11701 32 GEVLGIVGESGSGKTTLLNALSAR 55 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999985
No 416
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.86 E-value=0.0073 Score=50.03 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+.--
T Consensus 30 Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 30 NGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999864
No 417
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.86 E-value=0.0075 Score=48.77 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.++.-
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (218)
T cd03290 27 GQLTMIVGQVGCGKSSLLLAILGE 50 (218)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999974
No 418
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=95.86 E-value=0.0073 Score=49.50 Aligned_cols=24 Identities=29% Similarity=0.219 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+...
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 29 GKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CCEEEEEeCCCCCHHHHHHHHhcc
Confidence 579999999999999999999975
No 419
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=95.86 E-value=0.0077 Score=48.82 Aligned_cols=27 Identities=26% Similarity=0.203 Sum_probs=23.6
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhccc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNNY 208 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~~ 208 (241)
.=.+++++|..|+|||||.+.|..-..
T Consensus 28 ~Geiv~llG~NGaGKTTlLkti~Gl~~ 54 (237)
T COG0410 28 RGEIVALLGRNGAGKTTLLKTIMGLVR 54 (237)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356899999999999999999998643
No 420
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=95.85 E-value=0.0085 Score=46.27 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=21.0
Q ss_pred EEEEEEcCCCccHHHHHHHHHhcc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.-|.|+|..|+|||||++.+.++.
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~ 25 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQ 25 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 348899999999999999998854
No 421
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=95.85 E-value=0.0074 Score=50.64 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+.-.
T Consensus 50 Ge~~~I~G~nGsGKSTLl~~i~Gl 73 (271)
T PRK14238 50 NEVTAIIGPSGCGKSTYIKTLNRM 73 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 469999999999999999999763
No 422
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=95.85 E-value=0.0073 Score=49.17 Aligned_cols=24 Identities=13% Similarity=0.105 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+...
T Consensus 48 Ge~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 48 GERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999984
No 423
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.85 E-value=0.0075 Score=50.01 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (254)
T PRK14273 33 NSITALIGPSGCGKSTFLRTLNRM 56 (254)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 469999999999999999999863
No 424
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=95.85 E-value=0.013 Score=45.58 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 170 EELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 170 ~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+.+++... ....|.++|.+|+|||||+..+...
T Consensus 4 ~~~~~~~~~~--~~~kv~~~G~~~~GKTsl~~~l~~~ 38 (174)
T cd04153 4 SSLWSLFFPR--KEYKVIIVGLDNAGKTTILYQFLLG 38 (174)
T ss_pred hHHHHHhcCC--CccEEEEECCCCCCHHHHHHHHccC
Confidence 3445544332 2456789999999999999999753
No 425
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=95.85 E-value=0.0082 Score=50.85 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHh
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
...+|.|.|+.|+||||+++.+-.
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~~ 28 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALED 28 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHHH
Confidence 357899999999999999998853
No 426
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=95.85 E-value=0.0087 Score=46.16 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=18.6
Q ss_pred EEEEcCCCccHHHHHHHHHhc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~ 206 (241)
|.|+|.+|+|||||++.+.++
T Consensus 3 i~i~G~~~~GKTsl~~~~~~~ 23 (174)
T cd04135 3 CVVVGDGAVGKTCLLMSYAND 23 (174)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999887654
No 427
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.85 E-value=0.0052 Score=46.07 Aligned_cols=46 Identities=22% Similarity=0.103 Sum_probs=31.7
Q ss_pred ccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhccc
Q 042580 163 MGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNY 208 (241)
Q Consensus 163 vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~ 208 (241)
||....+.++.+.+..-.....-|-|+|..|+||+++|+.++....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 4555666677666644222355678999999999999999999643
No 428
>PRK14531 adenylate kinase; Provisional
Probab=95.84 E-value=0.0081 Score=47.30 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=20.4
Q ss_pred EEEEEEcCCCccHHHHHHHHHhcc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..|.|+|++|+||||+++.+.+..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999986643
No 429
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=95.84 E-value=0.0076 Score=50.45 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+.--
T Consensus 45 Ge~~~i~G~nGsGKSTLl~~l~Gl 68 (267)
T PRK14235 45 KTVTAFIGPSGCGKSTFLRCLNRM 68 (267)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999863
No 430
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=95.83 E-value=0.0087 Score=46.48 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=19.8
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
--|.|+|.+|+|||||++.+.+.
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~ 27 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDN 27 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 34689999999999999998764
No 431
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.83 E-value=0.0076 Score=50.53 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+...
T Consensus 39 Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 39 GKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999764
No 432
>COG3899 Predicted ATPase [General function prediction only]
Probab=95.83 E-value=0.017 Score=56.21 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=39.5
Q ss_pred CcccchHHHHHHHHHHhc-CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 161 NIMGLEDEIEELLDLLIV-GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~~-~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+++||+.+.+.|...+.. ......++.|.|..|+|||+|++.|...
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~ 47 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKP 47 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHH
Confidence 368999999999998865 2345779999999999999999999986
No 433
>PLN02165 adenylate isopentenyltransferase
Probab=95.82 E-value=0.0083 Score=51.64 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.-.+|+|+|+.|+||||||..+...
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~ 66 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATR 66 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH
Confidence 4569999999999999999998876
No 434
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=95.82 E-value=0.0079 Score=45.97 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=20.8
Q ss_pred EEEEEEcCCCccHHHHHHHHHhcc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
--|+|+|.+|+|||||.+.+.++.
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~ 27 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNE 27 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 457899999999999999997654
No 435
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=95.82 E-value=0.0079 Score=46.33 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=20.7
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
--|.|+|.+|+|||||+..+.+.
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~ 27 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDK 27 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999875
No 436
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=95.82 E-value=0.0081 Score=46.34 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-|.|+|..|+|||||++.+.+.
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~ 23 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTG 23 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998653
No 437
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=95.81 E-value=0.0079 Score=50.26 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|..|+|||||++.+.-
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~l~G 58 (264)
T PRK14243 36 NQITAFIGPSGCGKSTILRCFNR 58 (264)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999984
No 438
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.81 E-value=0.0078 Score=50.85 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+.--
T Consensus 33 Ge~~~I~G~nGaGKSTLl~~l~G~ 56 (282)
T PRK13640 33 GSWTALIGHNGSGKSTISKLINGL 56 (282)
T ss_pred CCEEEEECCCCCcHHHHHHHHhcc
Confidence 469999999999999999999974
No 439
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.81 E-value=0.0078 Score=46.67 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=21.1
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.|+|.|+.|+||+||.|.|++=
T Consensus 30 e~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhc
Confidence 46899999999999999999984
No 440
>PRK12338 hypothetical protein; Provisional
Probab=95.81 E-value=0.0085 Score=51.32 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..+|.|.|.+|+||||+|+.+-...
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC
Confidence 5799999999999999999997754
No 441
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.81 E-value=0.0078 Score=50.51 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (271)
T PRK13632 35 GEYVAILGHNGSGKSTISKILTGL 58 (271)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999875
No 442
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=95.81 E-value=0.0075 Score=49.88 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+...
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 33 GEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCC
Confidence 469999999999999999999873
No 443
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=95.81 E-value=0.0079 Score=45.66 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=19.7
Q ss_pred EEEEcCCCccHHHHHHHHHhcc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~~ 207 (241)
|.|+|.+|+|||||++.+....
T Consensus 2 i~i~G~~~~GKTsl~~~~~~~~ 23 (160)
T cd04156 2 VLLLGLDSAGKSTLLYKLKHAE 23 (160)
T ss_pred EEEEcCCCCCHHHHHHHHhcCC
Confidence 6899999999999999998754
No 444
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=95.81 E-value=0.008 Score=50.30 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+.-.
T Consensus 46 Ge~~~I~G~nGsGKSTLl~~l~Gl 69 (267)
T PRK14237 46 NKITALIGPSGSGKSTYLRSLNRM 69 (267)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999974
No 445
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.80 E-value=0.016 Score=48.51 Aligned_cols=41 Identities=27% Similarity=0.306 Sum_probs=28.0
Q ss_pred ccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHh
Q 042580 163 MGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 163 vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.|+.....+.+..+... .-.+|.|.|..|+||||+++.+.+
T Consensus 62 lg~~~~~~~~l~~~~~~--~~GlilisG~tGSGKTT~l~all~ 102 (264)
T cd01129 62 LGLKPENLEIFRKLLEK--PHGIILVTGPTGSGKTTTLYSALS 102 (264)
T ss_pred cCCCHHHHHHHHHHHhc--CCCEEEEECCCCCcHHHHHHHHHh
Confidence 35544444444444332 256899999999999999998754
No 446
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=95.80 E-value=0.0082 Score=48.49 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+.-.
T Consensus 37 Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 37 GEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 468999999999999999999874
No 447
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=95.80 E-value=0.0094 Score=45.29 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=19.5
Q ss_pred EEEEcCCCccHHHHHHHHHhc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~ 206 (241)
|.|+|.+|+|||||...+.++
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~ 23 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKG 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999874
No 448
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=95.80 E-value=0.011 Score=46.76 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=29.5
Q ss_pred cchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 164 GLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 164 G~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
|.+.-++.|.+++- ....+.++|.+|+|||||.+.+.+..
T Consensus 112 gi~eL~~~l~~~l~----~~~~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 112 GVEELINAIKKLAK----KGGDVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CHHHHHHHHHHHhh----cCCcEEEEcCCCCCHHHHHHHHHHhc
Confidence 44555555555542 24578999999999999999999853
No 449
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.80 E-value=0.0078 Score=48.18 Aligned_cols=23 Identities=22% Similarity=0.107 Sum_probs=20.9
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|+|+.|.|||||+|.|.-.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 79999999999999999998753
No 450
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.80 E-value=0.019 Score=50.13 Aligned_cols=48 Identities=19% Similarity=0.216 Sum_probs=38.9
Q ss_pred ccCCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 158 KKRNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 158 ~~~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
....++|.+.....|...+..+. -.+-+-++|..|+||||||+.+-+.
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~ 68 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANH 68 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHH
Confidence 34568999999999999887653 3567889999999999999876663
No 451
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=95.79 E-value=0.0088 Score=47.14 Aligned_cols=25 Identities=20% Similarity=0.190 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+.-|+|+|.+|+|||||++.+.+.
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~ 47 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNR 47 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4677999999999999999999985
No 452
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.79 E-value=0.0077 Score=50.39 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|..|+|||||++.+..
T Consensus 47 Ge~~~i~G~nGsGKSTLl~~l~G 69 (268)
T PRK14248 47 HAVTALIGPSGCGKSTFLRSINR 69 (268)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45899999999999999999965
No 453
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.79 E-value=0.008 Score=49.83 Aligned_cols=22 Identities=27% Similarity=0.241 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHH
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAY 204 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~ 204 (241)
..+.+|+|..|+|||||+..|+
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~ 46 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAIC 46 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 6789999999999999999998
No 454
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=95.79 E-value=0.0095 Score=45.71 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-|.|+|.+|+|||||.+.+.+.
T Consensus 4 ki~iiG~~~vGKTsli~~~~~~ 25 (166)
T cd04122 4 KYIIIGDMGVGKSCLLHQFTEK 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3779999999999999998765
No 455
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=95.79 E-value=0.0078 Score=49.98 Aligned_cols=24 Identities=13% Similarity=0.142 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~i~G~ 50 (256)
T TIGR03873 27 GSLTGLLGPNGSGKSTLLRLLAGA 50 (256)
T ss_pred CcEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999874
No 456
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.79 E-value=0.033 Score=46.88 Aligned_cols=50 Identities=22% Similarity=0.115 Sum_probs=39.4
Q ss_pred cCCCCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe--CCCCHHHHH
Q 042580 178 VGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG--CEYYLHKVL 229 (241)
Q Consensus 178 ~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~--~~~~~~~il 229 (241)
.+=+.-+|+=|+|+.|+||||||-+++-+ ++..-...+|++ ..|++..+.
T Consensus 55 GGl~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~ 106 (279)
T COG0468 55 GGLPRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAK 106 (279)
T ss_pred CCcccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHH
Confidence 34355678889999999999999998876 555555889999 779886654
No 457
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.79 E-value=0.008 Score=50.04 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~i~G~ 51 (258)
T PRK13548 28 GEVVAILGPNGAGKSTLLRALSGE 51 (258)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999884
No 458
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.79 E-value=0.0083 Score=49.97 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+.--
T Consensus 26 Ge~~~IvG~nGsGKSTLlk~l~Gl 49 (255)
T cd03236 26 GQVLGLVGPNGIGKSTALKILAGK 49 (255)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 469999999999999999999884
No 459
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=95.79 E-value=0.01 Score=46.77 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
+.+.|+|+|..|+|||||+..+-...
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~ 27 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKA 27 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhc
Confidence 57899999999999999999987544
No 460
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=95.78 E-value=0.0081 Score=49.85 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+.-.
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~l~Gl 52 (254)
T PRK10418 29 GRVLALVGGSGSGKSLTCAAALGI 52 (254)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999864
No 461
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.78 E-value=0.0069 Score=52.05 Aligned_cols=20 Identities=35% Similarity=0.439 Sum_probs=18.2
Q ss_pred eEEEEEEcCCCccHHHHHHH
Q 042580 183 LFIVAIVGNSGFDKTNFAGE 202 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~ 202 (241)
.+++-++|.|||||||.|-.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA 21 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAA 21 (322)
T ss_pred cEEEEEecCCcccHHHHHHH
Confidence 57899999999999999877
No 462
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=95.78 E-value=0.0081 Score=49.85 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+.--
T Consensus 28 Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (255)
T PRK11231 28 GKITALIGPNGCGKSTLLKCFARL 51 (255)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999874
No 463
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=95.78 E-value=0.0086 Score=45.93 Aligned_cols=19 Identities=26% Similarity=0.310 Sum_probs=17.0
Q ss_pred EEEEcCCCccHHHHHHHHH
Q 042580 186 VAIVGNSGFDKTNFAGEAY 204 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~ 204 (241)
|+++|.+|+|||||++...
T Consensus 3 i~vvG~~gvGKTsli~~~~ 21 (158)
T cd04103 3 LGIVGNLQSGKSALVHRYL 21 (158)
T ss_pred EEEECCCCCcHHHHHHHHH
Confidence 7899999999999998653
No 464
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=95.78 E-value=0.0085 Score=48.49 Aligned_cols=24 Identities=25% Similarity=0.229 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+.-.
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRL 53 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999999864
No 465
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.78 E-value=0.011 Score=51.04 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=35.9
Q ss_pred ccCCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHh
Q 042580 158 KKRNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 158 ~~~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
+-+.++|.+..+..|.-.+.+. ...-+-+.|..|+||||||+.+-+
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~--~~~~vLl~G~pG~gKT~lar~la~ 51 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDP--GIGGVLVFGDRGTGKSTAVRALAA 51 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhcc--CCCcEEEEcCCCCCHHHHHHHHHH
Confidence 3456899999888877655432 255688999999999999999855
No 466
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.78 E-value=0.017 Score=46.05 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-++..|.|.+|+||||+++.+.+.
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~ 41 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEA 41 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHH
T ss_pred CeEEEEEECCCCCHHHHHHHHHHH
Confidence 467888999999999999998875
No 467
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=95.78 E-value=0.0083 Score=49.59 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|..|+|||||++.+.-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14240 29 NQVTALIGPSGCGKSTFLRTLNR 51 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999975
No 468
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=95.77 E-value=0.0087 Score=45.53 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-|+|+|.+|+|||||+..+.++
T Consensus 4 ki~i~G~~~~GKtsl~~~~~~~ 25 (164)
T cd04145 4 KLVVVGGGGVGKSALTIQFIQS 25 (164)
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4789999999999999986553
No 469
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.77 E-value=0.0083 Score=50.45 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
-.+++|+|..|+|||||++.+..
T Consensus 46 Ge~~~IiG~nGsGKSTLl~~l~G 68 (274)
T PRK14265 46 KKIIAFIGPSGCGKSTLLRCFNR 68 (274)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999984
No 470
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.77 E-value=0.0082 Score=46.82 Aligned_cols=23 Identities=30% Similarity=0.340 Sum_probs=21.1
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.|++|||..|+|||||.+.+-..
T Consensus 33 eVLgiVGESGSGKtTLL~~is~r 55 (258)
T COG4107 33 EVLGIVGESGSGKTTLLKCISGR 55 (258)
T ss_pred cEEEEEecCCCcHHhHHHHHhcc
Confidence 58999999999999999998775
No 471
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.77 E-value=0.0083 Score=49.71 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|..|+|||||++.+..
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~G 54 (253)
T PRK14261 32 NRVTALIGPSGCGKSTLLRCFNR 54 (253)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999984
No 472
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.76 E-value=0.0082 Score=50.48 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+.-.
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~laG~ 50 (272)
T PRK13547 27 GRVTALLGRNGAGKSTLLKALAGD 50 (272)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999764
No 473
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=95.76 E-value=0.0082 Score=52.19 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|+.|+|||||++.+..-
T Consensus 31 Gei~gIiG~sGaGKSTLlr~I~gl 54 (343)
T TIGR02314 31 GQIYGVIGASGAGKSTLIRCVNLL 54 (343)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999884
No 474
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=95.76 E-value=0.0083 Score=51.89 Aligned_cols=24 Identities=29% Similarity=0.209 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.|..-
T Consensus 33 Ge~~~ivG~sGsGKSTLl~~i~Gl 56 (330)
T PRK15093 33 GEIRGLVGESGSGKSLIAKAICGV 56 (330)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcc
Confidence 458999999999999999999874
No 475
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=95.75 E-value=0.0089 Score=45.39 Aligned_cols=22 Identities=14% Similarity=0.292 Sum_probs=19.5
Q ss_pred EEEEcCCCccHHHHHHHHHhcc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~~ 207 (241)
|.++|.+|+|||||.+.+.+..
T Consensus 3 i~liG~~~~GKSsli~~l~~~~ 24 (161)
T cd01861 3 LVFLGDQSVGKTSIITRFMYDT 24 (161)
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999987643
No 476
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.75 E-value=0.0087 Score=49.39 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+.-.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 28 NKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999864
No 477
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=95.75 E-value=0.0079 Score=49.61 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 27 GEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 468999999999999999999986
No 478
>PRK10867 signal recognition particle protein; Provisional
Probab=95.75 E-value=0.039 Score=49.45 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=20.7
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHh
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
....+|.++|.+|+||||.+-++..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3478999999999999997666655
No 479
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=95.74 E-value=0.0097 Score=46.49 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=23.3
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.+..-|+|+|..|+|||||++.+....
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~ 42 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRK 42 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 346678999999999999999998863
No 480
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.74 E-value=0.016 Score=55.43 Aligned_cols=46 Identities=17% Similarity=0.253 Sum_probs=36.9
Q ss_pred CcccchHHHHHHHHHHhc------C-CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 161 NIMGLEDEIEELLDLLIV------G-EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~~------~-~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++|.+..++.|.+.+.. . +.....+-++|+.|+|||+||+.+-..
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~ 511 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHH
Confidence 478999999998888753 1 223567889999999999999998775
No 481
>PRK09183 transposase/IS protein; Provisional
Probab=95.74 E-value=0.0085 Score=50.02 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+.|+|+.|+|||+||..+.+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 45779999999999999999764
No 482
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=95.74 E-value=0.0086 Score=50.48 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+..-
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~Gl 56 (279)
T PRK13650 33 GEWLSIIGHNGSGKSTTVRLIDGL 56 (279)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999874
No 483
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=95.74 E-value=0.0086 Score=48.94 Aligned_cols=24 Identities=29% Similarity=0.156 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+.--
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (232)
T PRK10771 25 GERVAILGPSGAGKSTLLNLIAGF 48 (232)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999763
No 484
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.74 E-value=0.0097 Score=51.87 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=24.6
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
+-..+++|||++|+|||.+|+.|++.-
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 567999999999999999999999964
No 485
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=95.74 E-value=0.0088 Score=48.64 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+...
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999984
No 486
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.74 E-value=0.018 Score=52.51 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=37.5
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+.....|.+++..+. -.+.+-++|+.|+||||+|+.+...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~ 61 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKV 61 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 368899999999999986643 3456678999999999999987663
No 487
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=95.73 E-value=0.0085 Score=48.46 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=20.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHH
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAY 204 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~ 204 (241)
..+++|+|+.|.|||||.+.|.
T Consensus 25 ~~i~~ivGpNGaGKSTll~~i~ 46 (212)
T cd03274 25 KSFSAIVGPNGSGKSNVIDSML 46 (212)
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 3799999999999999999987
No 488
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.73 E-value=0.009 Score=49.74 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
-.+++|+|..|+|||||++.+..
T Consensus 33 Ge~~~l~G~nGsGKSTLlk~l~G 55 (259)
T PRK14260 33 NKVTAIIGPSGCGKSTFIKTLNR 55 (259)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 46899999999999999999986
No 489
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.73 E-value=0.0087 Score=48.71 Aligned_cols=24 Identities=33% Similarity=0.234 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999874
No 490
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.73 E-value=0.06 Score=47.57 Aligned_cols=55 Identities=11% Similarity=0.010 Sum_probs=34.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcccccc--CCCeeEEEe-CCCCHHHH--HHHHHHHh
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNNYAKN--YFDCRAWVG-CEYYLHKV--LDSIIKSV 236 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~~v~~--~F~~~~wV~-~~~~~~~i--l~~Il~~l 236 (241)
...+|.++|..|+||||.+.++........ +=..++-|+ .+|....+ ++...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~l 232 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIM 232 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcC
Confidence 468999999999999999998876532211 112345566 55554333 44444443
No 491
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.73 E-value=0.0092 Score=48.52 Aligned_cols=25 Identities=28% Similarity=0.209 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.-.+++|+|..|+|||||++.+.--
T Consensus 39 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 63 (226)
T cd03248 39 PGEVTALVGPSGSGKSTVVALLENF 63 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999999874
No 492
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.72 E-value=0.011 Score=45.28 Aligned_cols=24 Identities=29% Similarity=0.492 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHh
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
...-|+|+|.+|+|||||.+.+..
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~ 29 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQ 29 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999999999874
No 493
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.72 E-value=0.0089 Score=49.46 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
-.+++|+|..|+|||||++.+.-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~G 53 (252)
T PRK14255 31 NEITALIGPSGCGKSTYLRTLNR 53 (252)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 45899999999999999999964
No 494
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=95.72 E-value=0.009 Score=49.97 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=18.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.++|+|.|-|||||||++-.+-.
T Consensus 2 ~~iIav~~KGGVGKTT~~~nLA~ 24 (270)
T PRK13185 2 ALVLAVYGKGGIGKSTTSSNLSA 24 (270)
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999996655443
No 495
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=95.72 E-value=0.0087 Score=49.52 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+.--
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~ 53 (251)
T PRK14270 30 NKITALIGPSGCGKSTFLRCLNRM 53 (251)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999963
No 496
>PTZ00035 Rad51 protein; Provisional
Probab=95.72 E-value=0.056 Score=46.94 Aligned_cols=60 Identities=12% Similarity=0.050 Sum_probs=39.0
Q ss_pred HhcCCCCeEEEEEEcCCCccHHHHHHHHHhcccc---cc-CCCeeEEEe--CCCCHHHHHHHHHHHh
Q 042580 176 LIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYA---KN-YFDCRAWVG--CEYYLHKVLDSIIKSV 236 (241)
Q Consensus 176 L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v---~~-~F~~~~wV~--~~~~~~~il~~Il~~l 236 (241)
|..+=..-.++-|+|..|+|||||+..+.-.... .. .=..++|++ ..|+.+.|. .+++++
T Consensus 111 LgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~-~ia~~~ 176 (337)
T PTZ00035 111 LGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIV-QIAERF 176 (337)
T ss_pred hCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHH-HHHHHh
Confidence 3344456789999999999999999988754221 11 113456888 667776643 334443
No 497
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=95.71 E-value=0.0094 Score=45.73 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHhcc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
-|.|+|.+|+|||||++.+.+..
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~ 25 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDS 25 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998764
No 498
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.71 E-value=0.081 Score=44.87 Aligned_cols=79 Identities=16% Similarity=0.150 Sum_probs=52.2
Q ss_pred CCcccch---HHHHHHHHHHhcC-CCCeEEEEEEcCCCccHHHHHHHHHhccccc-----cCCCeeEEEe--CCCCHHHH
Q 042580 160 RNIMGLE---DEIEELLDLLIVG-EPSLFIVAIVGNSGFDKTNFAGEAYNNNYAK-----NYFDCRAWVG--CEYYLHKV 228 (241)
Q Consensus 160 ~~~vG~~---~~~~~l~~~L~~~-~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~-----~~F~~~~wV~--~~~~~~~i 228 (241)
+..+|.. .-++.|.++|... ..+..-+.|||-+|.|||+++++-....-.. ..+ .++-|. ..++...+
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~-PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERI-PVVYVQMPPEPDERRF 112 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccc-cEEEEecCCCCChHHH
Confidence 3445543 3344555555432 3445678999999999999999988633221 112 233444 88999999
Q ss_pred HHHHHHHhCCC
Q 042580 229 LDSIIKSVMPR 239 (241)
Q Consensus 229 l~~Il~~l~~~ 239 (241)
...|+..|+.+
T Consensus 113 Y~~IL~~lgaP 123 (302)
T PF05621_consen 113 YSAILEALGAP 123 (302)
T ss_pred HHHHHHHhCcc
Confidence 99999999753
No 499
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=95.71 E-value=0.0088 Score=52.03 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 31 Gei~~iiG~nGsGKSTLlk~L~Gl 54 (343)
T PRK11153 31 GEIFGVIGASGAGKSTLIRCINLL 54 (343)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999999999874
No 500
>CHL00176 ftsH cell division protein; Validated
Probab=95.71 E-value=0.012 Score=55.30 Aligned_cols=47 Identities=28% Similarity=0.299 Sum_probs=34.3
Q ss_pred CCcccchHHHHHHHHHH---hcC-------CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLL---IVG-------EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L---~~~-------~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++.|.+..++++.+.+ ... ....+-+-++|++|+|||+||+.+.+.
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45788887776666554 221 123456889999999999999999885
Done!