Query 042580
Match_columns 241
No_of_seqs 131 out of 1427
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 12:58:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042580.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042580hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qfl_A MLA10; coiled-coil, (CC 99.7 3.9E-17 1.3E-21 118.3 11.4 85 3-99 1-85 (115)
2 2a5y_B CED-4; apoptosis; HET: 99.6 1.3E-15 4.5E-20 138.5 9.9 77 163-239 131-214 (549)
3 1vt4_I APAF-1 related killer D 99.3 1.8E-12 6.1E-17 123.5 6.7 73 162-235 130-205 (1221)
4 3sfz_A APAF-1, apoptotic pepti 99.3 2.2E-12 7.6E-17 126.5 7.7 81 158-238 122-208 (1249)
5 1z6t_A APAF-1, apoptotic prote 99.2 3.2E-11 1.1E-15 110.3 8.8 74 159-232 123-199 (591)
6 1w5s_A Origin recognition comp 98.5 3.4E-07 1.2E-11 79.5 8.1 79 160-238 22-113 (412)
7 2qen_A Walker-type ATPase; unk 98.4 8.1E-07 2.8E-11 75.1 7.6 69 158-237 10-86 (350)
8 2qby_B CDC6 homolog 3, cell di 98.3 9.8E-07 3.3E-11 75.9 7.4 77 160-236 20-107 (384)
9 2qby_A CDC6 homolog 1, cell di 98.3 6E-07 2.1E-11 76.9 5.8 75 160-236 20-101 (386)
10 1fnn_A CDC6P, cell division co 98.2 6.3E-06 2.1E-10 70.8 10.8 77 160-237 17-99 (389)
11 2v1u_A Cell division control p 98.2 1.6E-06 5.5E-11 74.3 7.0 79 160-238 19-105 (387)
12 2fna_A Conserved hypothetical 98.2 3.4E-06 1.2E-10 71.4 8.1 67 158-235 11-84 (357)
13 1jbk_A CLPB protein; beta barr 98.1 3.8E-06 1.3E-10 64.4 5.8 45 160-206 22-66 (195)
14 2p65_A Hypothetical protein PF 98.0 5.9E-06 2E-10 63.2 5.1 45 160-206 22-66 (187)
15 2chg_A Replication factor C sm 98.0 2E-05 6.8E-10 61.8 7.6 45 160-206 17-61 (226)
16 1njg_A DNA polymerase III subu 98.0 9E-06 3.1E-10 64.5 5.4 47 160-207 23-69 (250)
17 3te6_A Regulatory protein SIR3 97.9 1.6E-05 5.3E-10 67.1 5.8 77 161-238 21-107 (318)
18 3n70_A Transport activator; si 97.7 2.8E-05 9.5E-10 57.8 4.0 46 161-206 2-47 (145)
19 1sxj_B Activator 1 37 kDa subu 97.6 6E-05 2.1E-09 62.9 5.5 45 160-206 21-65 (323)
20 1iqp_A RFCS; clamp loader, ext 97.6 7E-05 2.4E-09 62.6 5.7 45 160-206 25-69 (327)
21 3h4m_A Proteasome-activating n 97.5 9.9E-05 3.4E-09 60.7 5.5 48 159-206 16-74 (285)
22 2w58_A DNAI, primosome compone 97.5 0.00014 4.8E-09 56.7 5.7 51 168-220 37-89 (202)
23 3c8u_A Fructokinase; YP_612366 97.5 0.00012 4.1E-09 57.6 4.8 39 168-206 7-45 (208)
24 3cf0_A Transitional endoplasmi 97.5 0.00014 4.9E-09 60.6 5.5 47 160-206 15-72 (301)
25 3pfi_A Holliday junction ATP-d 97.4 9.7E-05 3.3E-09 62.4 4.5 47 160-206 29-78 (338)
26 3pxg_A Negative regulator of g 97.4 0.00013 4.6E-09 64.7 5.6 45 160-206 180-224 (468)
27 1rz3_A Hypothetical protein rb 97.4 0.0002 6.7E-09 56.1 5.7 42 165-206 3-45 (201)
28 2qz4_A Paraplegin; AAA+, SPG7, 97.4 0.00018 6.1E-09 58.3 5.1 48 159-206 5-62 (262)
29 1in4_A RUVB, holliday junction 97.4 0.00014 4.7E-09 61.7 4.5 46 161-206 26-74 (334)
30 3ec2_A DNA replication protein 97.4 0.00011 3.9E-09 56.2 3.6 42 166-207 20-62 (180)
31 1sxj_D Activator 1 41 kDa subu 97.4 0.00011 3.7E-09 62.2 3.8 45 160-206 37-81 (353)
32 3b9p_A CG5977-PA, isoform A; A 97.4 0.00017 5.7E-09 59.8 4.8 47 160-206 21-77 (297)
33 1jr3_A DNA polymerase III subu 97.4 0.00022 7.6E-09 60.7 5.7 45 161-206 17-61 (373)
34 3co5_A Putative two-component 97.4 3.8E-05 1.3E-09 56.9 0.8 46 161-206 5-50 (143)
35 3syl_A Protein CBBX; photosynt 97.4 0.00019 6.5E-09 59.7 5.1 46 161-206 32-90 (309)
36 3eie_A Vacuolar protein sortin 97.4 0.00021 7.3E-09 60.1 5.5 47 160-206 18-74 (322)
37 3uk6_A RUVB-like 2; hexameric 97.3 0.00023 7.8E-09 60.7 5.5 48 160-207 44-94 (368)
38 3d8b_A Fidgetin-like protein 1 97.3 0.00018 6E-09 61.6 4.8 47 160-206 84-140 (357)
39 1odf_A YGR205W, hypothetical 3 97.3 0.00031 1.1E-08 58.4 6.0 28 179-206 27-54 (290)
40 2bjv_A PSP operon transcriptio 97.3 0.00053 1.8E-08 55.8 7.2 47 160-206 6-52 (265)
41 1lv7_A FTSH; alpha/beta domain 97.3 0.00025 8.6E-09 57.5 5.0 47 160-206 12-68 (257)
42 1ofh_A ATP-dependent HSL prote 97.3 0.00016 5.6E-09 59.9 3.9 47 160-206 15-73 (310)
43 1xwi_A SKD1 protein; VPS4B, AA 97.3 0.00033 1.1E-08 59.1 5.7 47 160-206 12-68 (322)
44 1sxj_A Activator 1 95 kDa subu 97.3 0.0003 1E-08 63.2 5.8 47 160-206 39-100 (516)
45 1hqc_A RUVB; extended AAA-ATPa 97.3 0.00015 5.2E-09 60.6 3.7 47 160-206 12-61 (324)
46 1sxj_E Activator 1 40 kDa subu 97.3 0.00017 5.9E-09 61.1 4.0 44 160-205 14-58 (354)
47 3bos_A Putative DNA replicatio 97.3 0.00043 1.5E-08 54.9 6.2 39 166-206 37-75 (242)
48 3pvs_A Replication-associated 97.3 0.00025 8.6E-09 62.6 5.0 45 160-206 26-73 (447)
49 2chq_A Replication factor C sm 97.2 0.00019 6.6E-09 59.6 3.9 45 160-206 17-61 (319)
50 1zp6_A Hypothetical protein AT 97.2 0.00021 7.1E-09 55.1 3.5 24 183-206 9-32 (191)
51 1kgd_A CASK, peripheral plasma 97.2 0.00018 6.2E-09 55.3 3.1 24 183-206 5-28 (180)
52 4fcw_A Chaperone protein CLPB; 97.2 0.00029 1E-08 58.5 4.3 46 161-206 18-70 (311)
53 1ly1_A Polynucleotide kinase; 97.1 0.00029 1E-08 53.5 3.7 23 183-205 2-24 (181)
54 1sxj_C Activator 1 40 kDa subu 97.1 0.00043 1.5E-08 58.6 5.0 44 161-206 26-69 (340)
55 3kb2_A SPBC2 prophage-derived 97.1 0.00025 8.5E-09 53.5 3.2 23 184-206 2-24 (173)
56 3pxi_A Negative regulator of g 97.1 0.00046 1.6E-08 64.9 5.6 45 160-206 180-224 (758)
57 3hws_A ATP-dependent CLP prote 97.1 0.00051 1.7E-08 58.7 5.2 46 161-206 16-74 (363)
58 1ojl_A Transcriptional regulat 97.1 0.00036 1.2E-08 58.4 4.1 47 160-206 2-48 (304)
59 4gp7_A Metallophosphoesterase; 97.1 0.0003 1E-08 53.6 3.3 23 183-205 9-31 (171)
60 3tr0_A Guanylate kinase, GMP k 97.1 0.0003 1E-08 54.8 3.3 23 184-206 8-30 (205)
61 1kag_A SKI, shikimate kinase I 97.1 0.00025 8.4E-09 53.7 2.7 23 184-206 5-27 (173)
62 2x8a_A Nuclear valosin-contain 97.1 0.00061 2.1E-08 56.1 5.2 46 160-206 10-67 (274)
63 3u61_B DNA polymerase accessor 97.1 0.00063 2.2E-08 57.0 5.4 46 160-206 26-71 (324)
64 3vaa_A Shikimate kinase, SK; s 97.1 0.00031 1.1E-08 54.7 3.3 24 183-206 25-48 (199)
65 1qhx_A CPT, protein (chloramph 97.1 0.00033 1.1E-08 53.3 3.3 23 184-206 4-26 (178)
66 1qvr_A CLPB protein; coiled co 97.1 0.00043 1.5E-08 66.0 4.7 45 160-206 170-214 (854)
67 1ixz_A ATP-dependent metallopr 97.1 0.00071 2.4E-08 54.7 5.4 46 160-206 16-72 (254)
68 3uie_A Adenylyl-sulfate kinase 97.0 0.00042 1.4E-08 54.1 3.7 25 182-206 24-48 (200)
69 2bdt_A BH3686; alpha-beta prot 97.0 0.00036 1.2E-08 53.7 3.3 23 184-206 3-25 (189)
70 1knq_A Gluconate kinase; ALFA/ 97.0 0.00041 1.4E-08 52.7 3.5 24 183-206 8-31 (175)
71 3vfd_A Spastin; ATPase, microt 97.0 0.00059 2E-08 58.9 4.9 47 160-206 115-171 (389)
72 2qp9_X Vacuolar protein sortin 97.0 0.00057 1.9E-08 58.4 4.7 47 160-206 51-107 (355)
73 1r6b_X CLPA protein; AAA+, N-t 97.0 0.00073 2.5E-08 63.4 5.8 45 160-206 186-230 (758)
74 1l8q_A Chromosomal replication 97.0 0.00069 2.3E-08 56.9 5.1 39 168-206 22-60 (324)
75 1d2n_A N-ethylmaleimide-sensit 97.0 0.0011 3.6E-08 54.2 6.1 47 160-206 33-87 (272)
76 3asz_A Uridine kinase; cytidin 97.0 0.00042 1.4E-08 54.3 3.6 25 182-206 5-29 (211)
77 2r62_A Cell division protease 97.0 0.00026 8.8E-09 57.7 2.3 47 160-206 11-67 (268)
78 4eun_A Thermoresistant glucoki 97.0 0.0004 1.4E-08 54.2 3.3 25 182-206 28-52 (200)
79 2rhm_A Putative kinase; P-loop 97.0 0.00049 1.7E-08 52.9 3.7 25 182-206 4-28 (193)
80 2zan_A Vacuolar protein sortin 97.0 0.00075 2.5E-08 59.5 5.2 47 160-206 134-190 (444)
81 2j41_A Guanylate kinase; GMP, 97.0 0.00043 1.5E-08 53.9 3.3 24 183-206 6-29 (207)
82 1kht_A Adenylate kinase; phosp 97.0 0.00045 1.5E-08 53.0 3.3 23 184-206 4-26 (192)
83 2qt1_A Nicotinamide riboside k 96.9 0.00055 1.9E-08 53.5 3.8 26 181-206 19-44 (207)
84 1iy2_A ATP-dependent metallopr 96.9 0.00074 2.5E-08 55.4 4.7 46 160-206 40-96 (278)
85 3e70_C DPA, signal recognition 96.9 0.0027 9.2E-08 53.7 8.2 26 181-206 127-152 (328)
86 3t61_A Gluconokinase; PSI-biol 96.9 0.00037 1.3E-08 54.4 2.7 24 183-206 18-41 (202)
87 1lvg_A Guanylate kinase, GMP k 96.9 0.00035 1.2E-08 54.6 2.5 23 183-205 4-26 (198)
88 2hf9_A Probable hydrogenase ni 96.9 0.001 3.4E-08 52.5 5.2 37 168-206 25-61 (226)
89 3tau_A Guanylate kinase, GMP k 96.9 0.00051 1.7E-08 54.0 3.4 25 182-206 7-31 (208)
90 2wsm_A Hydrogenase expression/ 96.9 0.00069 2.4E-08 53.3 4.2 43 162-206 11-53 (221)
91 1cke_A CK, MSSA, protein (cyti 96.9 0.00051 1.7E-08 54.4 3.3 22 184-205 6-27 (227)
92 2c9o_A RUVB-like 1; hexameric 96.9 0.0011 3.6E-08 58.7 5.7 47 160-206 37-86 (456)
93 2ga8_A Hypothetical 39.9 kDa p 96.9 0.0012 4.2E-08 56.2 5.7 44 163-206 2-47 (359)
94 3trf_A Shikimate kinase, SK; a 96.9 0.00049 1.7E-08 52.7 3.0 24 183-206 5-28 (185)
95 2qor_A Guanylate kinase; phosp 96.9 0.00039 1.3E-08 54.4 2.5 25 182-206 11-35 (204)
96 1uf9_A TT1252 protein; P-loop, 96.9 0.00066 2.3E-08 52.6 3.8 26 181-206 6-31 (203)
97 2kjq_A DNAA-related protein; s 96.9 0.00049 1.7E-08 51.4 2.8 26 182-207 35-60 (149)
98 1tev_A UMP-CMP kinase; ploop, 96.9 0.00063 2.2E-08 52.2 3.6 23 183-205 3-25 (196)
99 1ukz_A Uridylate kinase; trans 96.9 0.00068 2.3E-08 52.7 3.8 26 181-206 13-38 (203)
100 3tqc_A Pantothenate kinase; bi 96.9 0.0011 3.7E-08 55.9 5.2 26 181-206 90-115 (321)
101 1znw_A Guanylate kinase, GMP k 96.9 0.00056 1.9E-08 53.7 3.2 24 183-206 20-43 (207)
102 1uj2_A Uridine-cytidine kinase 96.9 0.00065 2.2E-08 55.0 3.6 26 181-206 20-45 (252)
103 3aez_A Pantothenate kinase; tr 96.9 0.0007 2.4E-08 56.9 3.8 26 181-206 88-113 (312)
104 2bbw_A Adenylate kinase 4, AK4 96.9 0.00059 2E-08 55.0 3.3 23 183-205 27-49 (246)
105 2r44_A Uncharacterized protein 96.8 0.0011 3.7E-08 55.8 4.9 42 161-206 28-69 (331)
106 4b4t_K 26S protease regulatory 96.8 0.0011 3.8E-08 58.0 5.0 47 160-206 172-229 (428)
107 2yvu_A Probable adenylyl-sulfa 96.8 0.00073 2.5E-08 51.9 3.5 25 182-206 12-36 (186)
108 1zuh_A Shikimate kinase; alpha 96.8 0.00064 2.2E-08 51.3 3.1 25 182-206 6-30 (168)
109 3iij_A Coilin-interacting nucl 96.8 0.00052 1.8E-08 52.4 2.6 24 183-206 11-34 (180)
110 1gvn_B Zeta; postsegregational 96.8 0.0014 4.8E-08 54.3 5.4 39 168-206 15-56 (287)
111 1jjv_A Dephospho-COA kinase; P 96.8 0.00074 2.5E-08 52.7 3.5 22 184-205 3-24 (206)
112 2c95_A Adenylate kinase 1; tra 96.8 0.00069 2.3E-08 52.2 3.3 24 183-206 9-32 (196)
113 3a4m_A L-seryl-tRNA(SEC) kinas 96.8 0.00077 2.6E-08 54.9 3.7 24 183-206 4-27 (260)
114 3p32_A Probable GTPase RV1496/ 96.8 0.0016 5.4E-08 55.6 5.7 38 169-206 65-102 (355)
115 1z6g_A Guanylate kinase; struc 96.8 0.00057 1.9E-08 54.2 2.6 24 183-206 23-46 (218)
116 1htw_A HI0065; nucleotide-bind 96.8 0.00084 2.9E-08 50.6 3.5 25 182-206 32-56 (158)
117 1qf9_A UMP/CMP kinase, protein 96.8 0.001 3.4E-08 51.0 4.0 25 182-206 5-29 (194)
118 3fwy_A Light-independent proto 96.8 0.00074 2.5E-08 56.8 3.5 25 181-205 46-70 (314)
119 3hu3_A Transitional endoplasmi 96.8 0.0012 4.1E-08 58.9 4.9 47 160-206 204-261 (489)
120 1xjc_A MOBB protein homolog; s 96.8 0.00076 2.6E-08 51.5 3.1 25 182-206 3-27 (169)
121 1um8_A ATP-dependent CLP prote 96.8 0.0014 4.7E-08 56.2 5.2 47 160-206 21-95 (376)
122 2plr_A DTMP kinase, probable t 96.8 0.00085 2.9E-08 52.3 3.5 24 183-206 4-27 (213)
123 3cm0_A Adenylate kinase; ATP-b 96.8 0.00088 3E-08 51.2 3.5 23 183-205 4-26 (186)
124 1via_A Shikimate kinase; struc 96.8 0.00065 2.2E-08 51.6 2.7 23 184-206 5-27 (175)
125 2jeo_A Uridine-cytidine kinase 96.8 0.00092 3.1E-08 53.9 3.7 25 182-206 24-48 (245)
126 3ney_A 55 kDa erythrocyte memb 96.8 0.00076 2.6E-08 52.8 3.1 25 182-206 18-42 (197)
127 2bwj_A Adenylate kinase 5; pho 96.7 0.00082 2.8E-08 51.9 3.2 24 183-206 12-35 (199)
128 1y63_A LMAJ004144AAA protein; 96.7 0.00088 3E-08 51.5 3.3 25 182-206 9-33 (184)
129 1s96_A Guanylate kinase, GMP k 96.7 0.00085 2.9E-08 53.4 3.3 24 183-206 16-39 (219)
130 2p5t_B PEZT; postsegregational 96.7 0.0015 5E-08 53.0 4.7 41 166-206 12-55 (253)
131 4e22_A Cytidylate kinase; P-lo 96.7 0.0008 2.7E-08 54.6 3.1 22 183-204 27-48 (252)
132 4b4t_M 26S protease regulatory 96.7 0.0014 4.9E-08 57.4 4.8 47 160-206 181-238 (434)
133 4b4t_L 26S protease subunit RP 96.7 0.0015 5.2E-08 57.3 5.0 47 160-206 181-238 (437)
134 1sq5_A Pantothenate kinase; P- 96.7 0.0022 7.4E-08 53.6 5.7 26 181-206 78-103 (308)
135 2pt5_A Shikimate kinase, SK; a 96.7 0.00098 3.4E-08 50.1 3.3 22 185-206 2-23 (168)
136 3tlx_A Adenylate kinase 2; str 96.7 0.0018 6.2E-08 52.1 5.1 39 168-206 14-52 (243)
137 1rj9_A FTSY, signal recognitio 96.7 0.00095 3.2E-08 55.9 3.4 25 182-206 101-125 (304)
138 1ypw_A Transitional endoplasmi 96.7 0.0009 3.1E-08 63.3 3.6 47 160-206 204-261 (806)
139 3tif_A Uncharacterized ABC tra 96.7 0.00091 3.1E-08 53.8 3.1 23 183-205 31-53 (235)
140 2onk_A Molybdate/tungstate ABC 96.7 0.00097 3.3E-08 53.8 3.2 25 181-206 23-47 (240)
141 2cdn_A Adenylate kinase; phosp 96.7 0.001 3.5E-08 51.7 3.3 25 182-206 19-43 (201)
142 2ce7_A Cell division protein F 96.7 0.0021 7.3E-08 57.0 5.6 47 160-206 16-72 (476)
143 2iyv_A Shikimate kinase, SK; t 96.7 0.00075 2.6E-08 51.6 2.4 23 184-206 3-25 (184)
144 4a74_A DNA repair and recombin 96.7 0.0011 3.7E-08 52.3 3.4 39 182-220 24-66 (231)
145 2pcj_A ABC transporter, lipopr 96.7 0.0009 3.1E-08 53.4 2.9 23 183-205 30-52 (224)
146 4b4t_J 26S protease regulatory 96.6 0.0014 4.7E-08 56.9 4.2 47 160-206 148-205 (405)
147 1nn5_A Similar to deoxythymidy 96.6 0.0011 3.7E-08 51.9 3.3 24 183-206 9-32 (215)
148 3b9q_A Chloroplast SRP recepto 96.6 0.0012 4.2E-08 55.1 3.8 25 182-206 99-123 (302)
149 1e6c_A Shikimate kinase; phosp 96.6 0.00091 3.1E-08 50.5 2.7 23 184-206 3-25 (173)
150 2ehv_A Hypothetical protein PH 96.6 0.0011 3.7E-08 53.1 3.3 22 183-204 30-51 (251)
151 2f6r_A COA synthase, bifunctio 96.6 0.0012 4.1E-08 54.5 3.6 25 181-205 73-97 (281)
152 2f1r_A Molybdopterin-guanine d 96.6 0.00066 2.3E-08 51.9 1.8 24 183-206 2-25 (171)
153 2wwf_A Thymidilate kinase, put 96.6 0.0011 3.9E-08 51.6 3.2 24 183-206 10-33 (212)
154 3nbx_X ATPase RAVA; AAA+ ATPas 96.6 0.0022 7.7E-08 57.3 5.3 43 160-206 22-64 (500)
155 2cvh_A DNA repair and recombin 96.6 0.003 1E-07 49.4 5.5 43 182-229 19-63 (220)
156 1n0w_A DNA repair protein RAD5 96.6 0.0047 1.6E-07 49.0 6.8 47 182-228 23-75 (243)
157 1vht_A Dephospho-COA kinase; s 96.6 0.0015 5.2E-08 51.4 3.8 23 183-205 4-26 (218)
158 2pez_A Bifunctional 3'-phospho 96.6 0.0014 4.9E-08 49.9 3.5 24 183-206 5-28 (179)
159 2yhs_A FTSY, cell division pro 96.6 0.0022 7.6E-08 57.0 5.2 25 182-206 292-316 (503)
160 2vli_A Antibiotic resistance p 96.6 0.00083 2.8E-08 51.2 2.1 24 183-206 5-28 (183)
161 1cr0_A DNA primase/helicase; R 96.6 0.0044 1.5E-07 51.2 6.7 51 183-235 35-86 (296)
162 1zu4_A FTSY; GTPase, signal re 96.6 0.0026 8.9E-08 53.6 5.4 26 181-206 103-128 (320)
163 3lnc_A Guanylate kinase, GMP k 96.6 0.00079 2.7E-08 53.7 2.1 22 183-204 27-48 (231)
164 4b4t_H 26S protease regulatory 96.6 0.0018 6.2E-08 57.0 4.5 47 160-206 209-266 (467)
165 1np6_A Molybdopterin-guanine d 96.6 0.0013 4.6E-08 50.3 3.3 25 182-206 5-29 (174)
166 1m7g_A Adenylylsulfate kinase; 96.6 0.0016 5.4E-08 51.2 3.7 25 182-206 24-48 (211)
167 1b0u_A Histidine permease; ABC 96.6 0.0012 4.1E-08 54.0 3.1 23 183-205 32-54 (262)
168 3b85_A Phosphate starvation-in 96.6 0.00097 3.3E-08 52.6 2.4 23 184-206 23-45 (208)
169 2v54_A DTMP kinase, thymidylat 96.6 0.0014 4.8E-08 50.8 3.4 24 183-206 4-27 (204)
170 2cbz_A Multidrug resistance-as 96.6 0.0012 4.2E-08 53.1 3.1 24 183-206 31-54 (237)
171 2grj_A Dephospho-COA kinase; T 96.5 0.0015 5.2E-08 50.8 3.5 25 182-206 11-35 (192)
172 2d2e_A SUFC protein; ABC-ATPas 96.5 0.0013 4.6E-08 53.3 3.2 24 183-206 29-52 (250)
173 1zd8_A GTP:AMP phosphotransfer 96.5 0.0013 4.4E-08 52.2 3.1 24 183-206 7-30 (227)
174 3t15_A Ribulose bisphosphate c 96.5 0.0013 4.5E-08 54.6 3.2 26 181-206 34-59 (293)
175 1ji0_A ABC transporter; ATP bi 96.5 0.0012 4.1E-08 53.2 2.9 24 183-206 32-55 (240)
176 2z4s_A Chromosomal replication 96.5 0.0024 8.2E-08 56.2 5.0 45 161-206 106-153 (440)
177 1g6h_A High-affinity branched- 96.5 0.0012 4.2E-08 53.8 2.9 24 183-206 33-56 (257)
178 3gfo_A Cobalt import ATP-bindi 96.5 0.0013 4.5E-08 54.2 3.1 23 183-205 34-56 (275)
179 2pze_A Cystic fibrosis transme 96.5 0.0013 4.5E-08 52.6 3.0 24 183-206 34-57 (229)
180 2zu0_C Probable ATP-dependent 96.5 0.0015 5E-08 53.6 3.3 24 183-206 46-69 (267)
181 2olj_A Amino acid ABC transpor 96.5 0.0013 4.5E-08 53.8 3.0 24 183-206 50-73 (263)
182 1mv5_A LMRA, multidrug resista 96.5 0.0014 5E-08 52.8 3.2 24 183-206 28-51 (243)
183 4g1u_C Hemin import ATP-bindin 96.5 0.0014 4.9E-08 53.7 3.1 23 183-205 37-59 (266)
184 2og2_A Putative signal recogni 96.5 0.0018 6E-08 55.5 3.7 25 182-206 156-180 (359)
185 1g8p_A Magnesium-chelatase 38 96.5 0.0014 4.7E-08 55.3 3.0 45 160-206 24-68 (350)
186 1aky_A Adenylate kinase; ATP:A 96.5 0.0016 5.5E-08 51.4 3.2 24 183-206 4-27 (220)
187 3umf_A Adenylate kinase; rossm 96.5 0.0019 6.4E-08 51.3 3.6 26 181-206 27-52 (217)
188 1sgw_A Putative ABC transporte 96.5 0.0012 4E-08 52.4 2.4 23 184-206 36-58 (214)
189 2ff7_A Alpha-hemolysin translo 96.5 0.0014 4.8E-08 53.1 2.9 24 183-206 35-58 (247)
190 1g41_A Heat shock protein HSLU 96.5 0.0032 1.1E-07 55.4 5.3 47 160-206 15-73 (444)
191 1oix_A RAS-related protein RAB 96.4 0.0018 6.1E-08 49.9 3.3 26 182-207 28-53 (191)
192 1vpl_A ABC transporter, ATP-bi 96.4 0.0015 5E-08 53.3 3.0 24 183-206 41-64 (256)
193 2px0_A Flagellar biosynthesis 96.4 0.0015 5E-08 54.5 2.9 25 182-206 104-128 (296)
194 2ghi_A Transport protein; mult 96.4 0.0015 5.2E-08 53.3 2.9 24 183-206 46-69 (260)
195 2ixe_A Antigen peptide transpo 96.4 0.0015 5.2E-08 53.7 2.9 24 183-206 45-68 (271)
196 1zak_A Adenylate kinase; ATP:A 96.4 0.0015 5E-08 51.7 2.7 24 183-206 5-28 (222)
197 2qi9_C Vitamin B12 import ATP- 96.4 0.0016 5.6E-08 52.8 3.0 23 184-206 27-49 (249)
198 2ihy_A ABC transporter, ATP-bi 96.4 0.0016 5.5E-08 53.7 3.0 24 183-206 47-70 (279)
199 2eyu_A Twitching motility prot 96.4 0.002 6.9E-08 52.6 3.5 24 182-205 24-47 (261)
200 2yz2_A Putative ABC transporte 96.4 0.0016 5.6E-08 53.3 2.9 24 183-206 33-56 (266)
201 3ake_A Cytidylate kinase; CMP 96.4 0.002 6.8E-08 50.1 3.2 21 185-205 4-24 (208)
202 1vma_A Cell division protein F 96.4 0.0023 7.8E-08 53.6 3.8 25 182-206 103-127 (306)
203 2nq2_C Hypothetical ABC transp 96.4 0.0017 5.9E-08 52.8 2.9 24 183-206 31-54 (253)
204 3sop_A Neuronal-specific septi 96.3 0.0019 6.6E-08 53.0 3.1 22 185-206 4-25 (270)
205 2f9l_A RAB11B, member RAS onco 96.3 0.002 6.9E-08 49.8 3.1 24 183-206 5-28 (199)
206 2wji_A Ferrous iron transport 96.3 0.0027 9.4E-08 47.4 3.8 24 183-206 3-26 (165)
207 2dhr_A FTSH; AAA+ protein, hex 96.3 0.0048 1.6E-07 55.1 5.8 48 159-206 30-87 (499)
208 2vp4_A Deoxynucleoside kinase; 96.3 0.0015 5.2E-08 52.1 2.4 25 182-206 19-43 (230)
209 3m6a_A ATP-dependent protease 96.3 0.0042 1.4E-07 56.1 5.5 47 160-206 81-131 (543)
210 3nwj_A ATSK2; P loop, shikimat 96.3 0.0018 6.1E-08 52.6 2.7 24 183-206 48-71 (250)
211 1fzq_A ADP-ribosylation factor 96.3 0.003 1E-07 48.0 3.8 26 181-206 14-39 (181)
212 2xxa_A Signal recognition part 96.3 0.004 1.4E-07 54.6 5.0 39 168-206 78-123 (433)
213 2ce2_X GTPase HRAS; signaling 96.3 0.0027 9.4E-08 46.7 3.4 23 185-207 5-27 (166)
214 2wjg_A FEOB, ferrous iron tran 96.3 0.0032 1.1E-07 47.8 3.8 24 183-206 7-30 (188)
215 4eaq_A DTMP kinase, thymidylat 96.3 0.0048 1.7E-07 49.2 5.0 27 182-208 25-51 (229)
216 1svm_A Large T antigen; AAA+ f 96.3 0.0049 1.7E-07 53.1 5.3 37 170-206 156-192 (377)
217 2dyk_A GTP-binding protein; GT 96.3 0.0031 1.1E-07 46.4 3.6 24 184-207 2-25 (161)
218 1yrb_A ATP(GTP)binding protein 96.3 0.0028 9.5E-08 51.2 3.6 26 181-206 12-37 (262)
219 3d3q_A TRNA delta(2)-isopenten 96.3 0.0026 8.8E-08 54.0 3.5 23 184-206 8-30 (340)
220 2zej_A Dardarin, leucine-rich 96.2 0.0021 7.2E-08 49.0 2.7 22 185-206 4-25 (184)
221 4b4t_I 26S protease regulatory 96.2 0.0043 1.5E-07 54.2 4.8 47 160-206 182-239 (437)
222 1z2a_A RAS-related protein RAB 96.2 0.0026 8.8E-08 47.2 3.1 25 183-207 5-29 (168)
223 2ged_A SR-beta, signal recogni 96.2 0.0056 1.9E-07 46.7 5.0 27 181-207 46-72 (193)
224 3r20_A Cytidylate kinase; stru 96.2 0.0027 9.2E-08 51.0 3.3 24 183-206 9-32 (233)
225 2pjz_A Hypothetical protein ST 96.2 0.0023 7.9E-08 52.3 3.0 23 184-206 31-53 (263)
226 3be4_A Adenylate kinase; malar 96.2 0.0022 7.6E-08 50.6 2.8 23 184-206 6-28 (217)
227 3kl4_A SRP54, signal recogniti 96.2 0.0043 1.5E-07 54.4 4.6 25 182-206 96-120 (433)
228 1j8m_F SRP54, signal recogniti 96.2 0.012 4.2E-07 48.9 7.2 24 183-206 98-121 (297)
229 3nh6_A ATP-binding cassette SU 96.2 0.0022 7.4E-08 53.7 2.6 23 183-205 80-102 (306)
230 1u8z_A RAS-related protein RAL 96.2 0.0034 1.2E-07 46.4 3.5 25 183-207 4-28 (168)
231 2v9p_A Replication protein E1; 96.2 0.0027 9.4E-08 53.0 3.2 25 182-206 125-149 (305)
232 1tq4_A IIGP1, interferon-induc 96.2 0.0032 1.1E-07 54.9 3.7 25 181-205 67-91 (413)
233 1ltq_A Polynucleotide kinase; 96.2 0.0031 1.1E-07 52.1 3.5 23 184-206 3-25 (301)
234 1c1y_A RAS-related protein RAP 96.2 0.0034 1.2E-07 46.4 3.5 24 184-207 4-27 (167)
235 1z08_A RAS-related protein RAB 96.2 0.0038 1.3E-07 46.4 3.7 25 183-207 6-30 (170)
236 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.0029 1E-07 49.8 3.2 24 183-206 23-46 (235)
237 2qgz_A Helicase loader, putati 96.2 0.005 1.7E-07 51.5 4.8 40 168-207 136-176 (308)
238 2nzj_A GTP-binding protein REM 96.2 0.003 1E-07 47.2 3.1 25 183-207 4-28 (175)
239 1pzn_A RAD51, DNA repair and r 96.1 0.0084 2.9E-07 51.0 6.2 54 181-235 129-188 (349)
240 1nij_A Hypothetical protein YJ 96.1 0.0027 9.3E-08 53.3 3.1 25 182-206 3-27 (318)
241 2ocp_A DGK, deoxyguanosine kin 96.1 0.0035 1.2E-07 50.2 3.6 25 183-207 2-26 (241)
242 3k1j_A LON protease, ATP-depen 96.1 0.0055 1.9E-07 56.0 5.3 43 160-206 41-83 (604)
243 3pxi_A Negative regulator of g 96.1 0.0052 1.8E-07 57.7 5.2 47 160-206 491-544 (758)
244 3con_A GTPase NRAS; structural 96.1 0.003 1E-07 48.1 3.1 24 184-207 22-45 (190)
245 3lda_A DNA repair protein RAD5 96.1 0.012 4.2E-07 51.0 7.2 54 182-236 177-236 (400)
246 2lkc_A Translation initiation 96.1 0.0048 1.7E-07 46.2 4.1 25 182-206 7-31 (178)
247 1q3t_A Cytidylate kinase; nucl 96.1 0.0033 1.1E-07 50.2 3.3 25 181-205 14-38 (236)
248 3t1o_A Gliding protein MGLA; G 96.1 0.0031 1.1E-07 48.1 3.1 24 183-206 14-37 (198)
249 2bbs_A Cystic fibrosis transme 96.1 0.0027 9.3E-08 52.7 2.9 24 183-206 64-87 (290)
250 1h65_A Chloroplast outer envel 96.1 0.0091 3.1E-07 48.6 5.9 39 169-207 25-63 (270)
251 3fvq_A Fe(3+) IONS import ATP- 96.1 0.0031 1.1E-07 53.9 3.2 23 183-205 30-52 (359)
252 1kao_A RAP2A; GTP-binding prot 96.1 0.0041 1.4E-07 45.9 3.5 24 184-207 4-27 (167)
253 2erx_A GTP-binding protein DI- 96.1 0.0036 1.2E-07 46.5 3.2 23 184-206 4-26 (172)
254 1a7j_A Phosphoribulokinase; tr 96.1 0.0016 5.5E-08 54.0 1.3 25 182-206 4-28 (290)
255 3cf2_A TER ATPase, transitiona 96.1 0.0045 1.5E-07 58.3 4.4 47 160-206 204-261 (806)
256 2qm8_A GTPase/ATPase; G protei 96.1 0.007 2.4E-07 51.3 5.2 34 172-205 44-77 (337)
257 1ak2_A Adenylate kinase isoenz 96.1 0.0037 1.3E-07 49.8 3.3 24 183-206 16-39 (233)
258 3tui_C Methionine import ATP-b 96.1 0.0034 1.2E-07 53.7 3.3 24 183-206 54-77 (366)
259 2gj8_A MNME, tRNA modification 96.0 0.0036 1.2E-07 47.3 3.1 23 184-206 5-27 (172)
260 1ek0_A Protein (GTP-binding pr 96.0 0.0037 1.3E-07 46.3 3.1 23 185-207 5-27 (170)
261 1z0j_A RAB-22, RAS-related pro 96.0 0.0037 1.3E-07 46.4 3.1 25 183-207 6-30 (170)
262 3bh0_A DNAB-like replicative h 96.0 0.014 4.8E-07 48.8 6.9 53 181-235 66-118 (315)
263 2p67_A LAO/AO transport system 96.0 0.0084 2.9E-07 50.8 5.6 35 171-205 44-78 (341)
264 3kkq_A RAS-related protein M-R 96.0 0.0043 1.5E-07 46.9 3.5 26 182-207 17-42 (183)
265 4dsu_A GTPase KRAS, isoform 2B 96.0 0.0044 1.5E-07 46.9 3.5 25 183-207 4-28 (189)
266 1m7b_A RND3/RHOE small GTP-bin 96.0 0.0043 1.5E-07 47.2 3.4 26 182-207 6-31 (184)
267 2v3c_C SRP54, signal recogniti 96.0 0.0035 1.2E-07 54.9 3.3 25 182-206 98-122 (432)
268 1ls1_A Signal recognition part 96.0 0.0043 1.5E-07 51.5 3.6 25 182-206 97-121 (295)
269 1z47_A CYSA, putative ABC-tran 96.0 0.0037 1.3E-07 53.4 3.2 23 183-205 41-63 (355)
270 3crm_A TRNA delta(2)-isopenten 96.0 0.0042 1.4E-07 52.3 3.5 24 183-206 5-28 (323)
271 2j37_W Signal recognition part 96.0 0.0064 2.2E-07 54.3 4.9 25 181-205 99-123 (504)
272 3def_A T7I23.11 protein; chlor 96.0 0.011 3.8E-07 47.9 6.0 39 169-207 22-60 (262)
273 2i1q_A DNA repair and recombin 96.0 0.016 5.5E-07 48.5 7.1 54 182-236 97-166 (322)
274 3zvl_A Bifunctional polynucleo 96.0 0.0037 1.3E-07 54.5 3.2 26 181-206 256-281 (416)
275 3a8t_A Adenylate isopentenyltr 96.0 0.0051 1.7E-07 52.1 3.9 25 182-206 39-63 (339)
276 3q85_A GTP-binding protein REM 96.0 0.0041 1.4E-07 46.2 3.0 23 183-205 2-24 (169)
277 1wms_A RAB-9, RAB9, RAS-relate 96.0 0.0043 1.5E-07 46.5 3.1 25 183-207 7-31 (177)
278 3q72_A GTP-binding protein RAD 96.0 0.0033 1.1E-07 46.6 2.5 22 185-206 4-25 (166)
279 2it1_A 362AA long hypothetical 96.0 0.0041 1.4E-07 53.3 3.3 23 183-205 29-51 (362)
280 1z0f_A RAB14, member RAS oncog 95.9 0.0049 1.7E-07 46.1 3.4 26 182-207 14-39 (179)
281 2yyz_A Sugar ABC transporter, 95.9 0.004 1.4E-07 53.2 3.2 23 183-205 29-51 (359)
282 3exa_A TRNA delta(2)-isopenten 95.9 0.0052 1.8E-07 51.5 3.8 24 183-206 3-26 (322)
283 2fn4_A P23, RAS-related protei 95.9 0.007 2.4E-07 45.3 4.3 26 182-207 8-33 (181)
284 3rlf_A Maltose/maltodextrin im 95.9 0.0042 1.4E-07 53.5 3.3 23 183-205 29-51 (381)
285 3t5g_A GTP-binding protein RHE 95.9 0.0049 1.7E-07 46.5 3.4 26 182-207 5-30 (181)
286 3kta_A Chromosome segregation 95.9 0.0046 1.6E-07 47.0 3.2 22 184-205 27-48 (182)
287 1g16_A RAS-related protein SEC 95.9 0.0044 1.5E-07 46.0 3.1 25 183-207 3-27 (170)
288 2hxs_A RAB-26, RAS-related pro 95.9 0.005 1.7E-07 46.2 3.4 25 183-207 6-30 (178)
289 3end_A Light-independent proto 95.9 0.0047 1.6E-07 51.3 3.5 26 181-206 39-64 (307)
290 3d31_A Sulfate/molybdate ABC t 95.9 0.0037 1.3E-07 53.3 2.8 24 183-206 26-49 (348)
291 2a9k_A RAS-related protein RAL 95.9 0.0052 1.8E-07 46.3 3.5 25 183-207 18-42 (187)
292 1r2q_A RAS-related protein RAB 95.9 0.0046 1.6E-07 45.8 3.1 24 183-206 6-29 (170)
293 1g29_1 MALK, maltose transport 95.9 0.0043 1.5E-07 53.3 3.2 23 183-205 29-51 (372)
294 1ky3_A GTP-binding protein YPT 95.9 0.0063 2.1E-07 45.6 3.9 26 182-207 7-32 (182)
295 3tw8_B RAS-related protein RAB 95.9 0.0038 1.3E-07 46.8 2.6 27 181-207 7-33 (181)
296 1v43_A Sugar-binding transport 95.9 0.0044 1.5E-07 53.2 3.3 23 183-205 37-59 (372)
297 3ihw_A Centg3; RAS, centaurin, 95.9 0.0047 1.6E-07 47.2 3.1 25 182-206 19-43 (184)
298 1zj6_A ADP-ribosylation factor 95.9 0.011 3.7E-07 44.9 5.2 35 169-206 5-39 (187)
299 1r6b_X CLPA protein; AAA+, N-t 95.9 0.012 4.2E-07 55.1 6.5 47 160-206 458-511 (758)
300 3c5c_A RAS-like protein 12; GD 95.9 0.0055 1.9E-07 46.8 3.5 26 182-207 20-45 (187)
301 3dm5_A SRP54, signal recogniti 95.9 0.0084 2.9E-07 52.6 5.1 25 182-206 99-123 (443)
302 2qnr_A Septin-2, protein NEDD5 95.9 0.0034 1.2E-07 52.3 2.5 23 183-206 19-41 (301)
303 1r8s_A ADP-ribosylation factor 95.9 0.0043 1.5E-07 45.9 2.8 21 186-206 3-23 (164)
304 1p9r_A General secretion pathw 95.9 0.01 3.5E-07 51.7 5.6 25 182-206 166-190 (418)
305 2dr3_A UPF0273 protein PH0284; 95.9 0.012 4.1E-07 46.7 5.7 47 183-231 23-69 (247)
306 1mh1_A RAC1; GTP-binding, GTPa 95.9 0.0055 1.9E-07 46.2 3.4 25 183-207 5-29 (186)
307 1svi_A GTP-binding protein YSX 95.9 0.0049 1.7E-07 47.1 3.2 26 182-207 22-47 (195)
308 2bme_A RAB4A, RAS-related prot 95.9 0.0048 1.6E-07 46.7 3.0 26 182-207 9-34 (186)
309 1nlf_A Regulatory protein REPA 95.9 0.0047 1.6E-07 50.6 3.2 24 183-206 30-53 (279)
310 2z43_A DNA repair and recombin 95.9 0.016 5.5E-07 48.6 6.6 54 182-236 106-165 (324)
311 2www_A Methylmalonic aciduria 95.8 0.0055 1.9E-07 52.1 3.7 25 181-205 72-96 (349)
312 1p5z_B DCK, deoxycytidine kina 95.8 0.0032 1.1E-07 51.1 2.1 25 182-206 23-47 (263)
313 1lw7_A Transcriptional regulat 95.8 0.0051 1.7E-07 52.6 3.4 24 183-206 170-193 (365)
314 3pqc_A Probable GTP-binding pr 95.8 0.0046 1.6E-07 47.0 2.9 26 182-207 22-47 (195)
315 3llu_A RAS-related GTP-binding 95.8 0.0049 1.7E-07 47.4 3.0 25 182-206 19-43 (196)
316 2oil_A CATX-8, RAS-related pro 95.8 0.0051 1.7E-07 47.0 3.1 26 182-207 24-49 (193)
317 1nrj_B SR-beta, signal recogni 95.8 0.0057 1.9E-07 47.7 3.4 27 181-207 10-36 (218)
318 2bov_A RAla, RAS-related prote 95.8 0.0059 2E-07 47.0 3.4 26 182-207 13-38 (206)
319 1oxx_K GLCV, glucose, ABC tran 95.8 0.0033 1.1E-07 53.7 2.1 23 183-205 31-53 (353)
320 1m2o_B GTP-binding protein SAR 95.8 0.0051 1.7E-07 47.2 3.0 24 183-206 23-46 (190)
321 2efe_B Small GTP-binding prote 95.8 0.0054 1.8E-07 46.1 3.1 25 183-207 12-36 (181)
322 2y8e_A RAB-protein 6, GH09086P 95.8 0.0053 1.8E-07 45.9 3.0 23 184-206 15-37 (179)
323 3bc1_A RAS-related protein RAB 95.8 0.0053 1.8E-07 46.6 3.1 26 182-207 10-35 (195)
324 1pui_A ENGB, probable GTP-bind 95.8 0.0028 9.6E-08 49.2 1.5 26 182-207 25-50 (210)
325 3hr8_A Protein RECA; alpha and 95.8 0.014 4.6E-07 49.9 5.8 38 181-220 59-96 (356)
326 2fg5_A RAB-22B, RAS-related pr 95.8 0.0055 1.9E-07 46.9 3.1 26 182-207 22-47 (192)
327 3foz_A TRNA delta(2)-isopenten 95.8 0.0069 2.3E-07 50.7 3.8 26 181-206 8-33 (316)
328 3bwd_D RAC-like GTP-binding pr 95.8 0.0056 1.9E-07 46.1 3.1 25 183-207 8-32 (182)
329 2atv_A RERG, RAS-like estrogen 95.8 0.0057 1.9E-07 47.0 3.1 25 183-207 28-52 (196)
330 2ewv_A Twitching motility prot 95.8 0.0057 1.9E-07 52.6 3.4 24 182-205 135-158 (372)
331 1upt_A ARL1, ADP-ribosylation 95.7 0.0079 2.7E-07 44.6 3.8 24 183-206 7-30 (171)
332 3clv_A RAB5 protein, putative; 95.7 0.0058 2E-07 46.6 3.1 25 183-207 7-31 (208)
333 3tkl_A RAS-related protein RAB 95.7 0.0073 2.5E-07 46.1 3.7 26 182-207 15-40 (196)
334 1ega_A Protein (GTP-binding pr 95.7 0.006 2.1E-07 50.8 3.4 26 182-207 7-32 (301)
335 2fh5_B SR-beta, signal recogni 95.7 0.0066 2.3E-07 47.2 3.5 26 182-207 6-31 (214)
336 1f6b_A SAR1; gtpases, N-termin 95.7 0.0038 1.3E-07 48.3 2.1 24 183-206 25-48 (198)
337 2iwr_A Centaurin gamma 1; ANK 95.7 0.0045 1.6E-07 46.5 2.4 24 183-206 7-30 (178)
338 2g6b_A RAS-related protein RAB 95.7 0.0061 2.1E-07 45.8 3.1 26 182-207 9-34 (180)
339 2obl_A ESCN; ATPase, hydrolase 95.7 0.006 2E-07 51.9 3.2 25 183-207 71-95 (347)
340 3oes_A GTPase rhebl1; small GT 95.7 0.007 2.4E-07 46.7 3.4 26 182-207 23-48 (201)
341 3jvv_A Twitching mobility prot 95.7 0.0066 2.3E-07 51.8 3.5 23 183-205 123-145 (356)
342 1gwn_A RHO-related GTP-binding 95.7 0.007 2.4E-07 47.1 3.4 26 182-207 27-52 (205)
343 1moz_A ARL1, ADP-ribosylation 95.7 0.0064 2.2E-07 45.8 3.1 25 182-206 17-41 (183)
344 1zbd_A Rabphilin-3A; G protein 95.7 0.0064 2.2E-07 46.8 3.1 25 183-207 8-32 (203)
345 1zd9_A ADP-ribosylation factor 95.7 0.0064 2.2E-07 46.4 3.1 25 183-207 22-46 (188)
346 1vg8_A RAS-related protein RAB 95.7 0.0086 3E-07 46.1 3.9 26 182-207 7-32 (207)
347 4gzl_A RAS-related C3 botulinu 95.7 0.0085 2.9E-07 46.4 3.8 25 183-207 30-54 (204)
348 3gd7_A Fusion complex of cysti 95.7 0.006 2.1E-07 52.7 3.2 23 183-205 47-69 (390)
349 1tue_A Replication protein E1; 95.6 0.011 3.6E-07 46.6 4.2 37 169-206 45-81 (212)
350 2gf9_A RAS-related protein RAB 95.6 0.0066 2.3E-07 46.2 3.1 25 183-207 22-46 (189)
351 3cbq_A GTP-binding protein REM 95.6 0.0048 1.7E-07 47.6 2.3 23 182-204 22-44 (195)
352 3reg_A RHO-like small GTPase; 95.6 0.0076 2.6E-07 46.1 3.4 26 182-207 22-47 (194)
353 2gza_A Type IV secretion syste 95.6 0.0051 1.8E-07 52.6 2.6 24 183-206 175-198 (361)
354 1v5w_A DMC1, meiotic recombina 95.6 0.043 1.5E-06 46.4 8.3 50 181-230 120-175 (343)
355 3dz8_A RAS-related protein RAB 95.6 0.006 2E-07 46.6 2.8 25 183-207 23-47 (191)
356 2ew1_A RAS-related protein RAB 95.6 0.0066 2.3E-07 47.2 3.0 25 182-206 25-49 (201)
357 2a5j_A RAS-related protein RAB 95.6 0.007 2.4E-07 46.2 3.1 25 183-207 21-45 (191)
358 1z06_A RAS-related protein RAB 95.6 0.0072 2.5E-07 46.0 3.1 26 182-207 19-44 (189)
359 1ksh_A ARF-like protein 2; sma 95.6 0.0064 2.2E-07 46.1 2.8 26 182-207 17-42 (186)
360 2o52_A RAS-related protein RAB 95.6 0.0065 2.2E-07 46.9 2.9 26 182-207 24-49 (200)
361 1x3s_A RAS-related protein RAB 95.6 0.0071 2.4E-07 46.0 3.1 25 183-207 15-39 (195)
362 2q3h_A RAS homolog gene family 95.6 0.0067 2.3E-07 46.6 3.0 26 182-207 19-44 (201)
363 2gf0_A GTP-binding protein DI- 95.6 0.0072 2.5E-07 46.2 3.1 25 182-206 7-31 (199)
364 2p5s_A RAS and EF-hand domain 95.6 0.0073 2.5E-07 46.5 3.1 26 182-207 27-52 (199)
365 3k53_A Ferrous iron transport 95.5 0.0089 3.1E-07 48.7 3.7 25 183-207 3-27 (271)
366 2qag_B Septin-6, protein NEDD5 95.5 0.0062 2.1E-07 53.2 2.8 24 183-206 42-65 (427)
367 2atx_A Small GTP binding prote 95.5 0.009 3.1E-07 45.6 3.4 25 183-207 18-42 (194)
368 2qu8_A Putative nucleolar GTP- 95.5 0.0094 3.2E-07 47.1 3.7 27 181-207 27-53 (228)
369 4edh_A DTMP kinase, thymidylat 95.5 0.027 9.2E-07 44.4 6.3 25 183-207 6-30 (213)
370 2j1l_A RHO-related GTP-binding 95.5 0.0074 2.5E-07 47.2 3.0 25 182-206 33-57 (214)
371 2fv8_A H6, RHO-related GTP-bin 95.5 0.008 2.7E-07 46.6 3.1 25 183-207 25-49 (207)
372 3v9p_A DTMP kinase, thymidylat 95.5 0.0096 3.3E-07 47.5 3.6 25 183-207 25-49 (227)
373 3lv8_A DTMP kinase, thymidylat 95.5 0.021 7.2E-07 45.8 5.6 50 183-233 27-78 (236)
374 3lxx_A GTPase IMAP family memb 95.5 0.011 3.7E-07 47.1 3.9 26 182-207 28-53 (239)
375 2bcg_Y Protein YP2, GTP-bindin 95.5 0.008 2.7E-07 46.4 3.0 26 182-207 7-32 (206)
376 2b6h_A ADP-ribosylation factor 95.5 0.0065 2.2E-07 46.6 2.5 25 182-206 28-52 (192)
377 4bas_A ADP-ribosylation factor 95.5 0.0092 3.2E-07 45.6 3.4 27 181-207 15-41 (199)
378 4tmk_A Protein (thymidylate ki 95.5 0.021 7.3E-07 45.0 5.5 50 184-234 4-55 (213)
379 2vhj_A Ntpase P4, P4; non- hyd 95.5 0.0092 3.1E-07 50.2 3.5 24 183-206 123-146 (331)
380 2afh_E Nitrogenase iron protei 95.5 0.0085 2.9E-07 49.2 3.3 23 183-205 2-24 (289)
381 2il1_A RAB12; G-protein, GDP, 95.4 0.0066 2.2E-07 46.5 2.4 25 183-207 26-50 (192)
382 2h17_A ADP-ribosylation factor 95.4 0.0073 2.5E-07 45.7 2.6 24 183-206 21-44 (181)
383 2h92_A Cytidylate kinase; ross 95.4 0.0074 2.5E-07 47.3 2.7 22 184-205 4-25 (219)
384 2rcn_A Probable GTPase ENGC; Y 95.4 0.0087 3E-07 51.1 3.3 24 184-207 216-239 (358)
385 3iev_A GTP-binding protein ERA 95.4 0.011 3.6E-07 49.4 3.8 27 181-207 8-34 (308)
386 1qvr_A CLPB protein; coiled co 95.4 0.014 4.9E-07 55.4 5.1 46 161-206 559-611 (854)
387 2cjw_A GTP-binding protein GEM 95.4 0.0087 3E-07 46.0 3.0 23 183-205 6-28 (192)
388 2hup_A RAS-related protein RAB 95.4 0.0089 3E-07 46.2 3.1 26 182-207 28-53 (201)
389 2npi_A Protein CLP1; CLP1-PCF1 95.4 0.0067 2.3E-07 53.6 2.6 24 183-206 138-161 (460)
390 3q3j_B RHO-related GTP-binding 95.4 0.01 3.5E-07 46.4 3.4 25 183-207 27-51 (214)
391 2yv5_A YJEQ protein; hydrolase 95.4 0.0084 2.9E-07 49.9 3.1 31 169-204 156-186 (302)
392 3cph_A RAS-related protein SEC 95.4 0.009 3.1E-07 46.2 3.1 25 183-207 20-44 (213)
393 2gco_A H9, RHO-related GTP-bin 95.4 0.01 3.5E-07 45.8 3.4 25 183-207 25-49 (201)
394 3cr8_A Sulfate adenylyltranfer 95.4 0.0076 2.6E-07 54.5 3.0 25 182-206 368-392 (552)
395 1yqt_A RNAse L inhibitor; ATP- 95.4 0.0086 2.9E-07 54.0 3.3 23 184-206 313-335 (538)
396 2x77_A ADP-ribosylation factor 95.4 0.011 3.8E-07 44.9 3.5 35 172-206 10-45 (189)
397 2j0v_A RAC-like GTP-binding pr 95.4 0.01 3.6E-07 46.0 3.4 26 182-207 8-33 (212)
398 2f7s_A C25KG, RAS-related prot 95.4 0.0093 3.2E-07 46.5 3.1 25 182-206 24-48 (217)
399 2h57_A ADP-ribosylation factor 95.4 0.0066 2.3E-07 46.3 2.2 25 183-207 21-45 (190)
400 2ffh_A Protein (FFH); SRP54, s 95.3 0.0099 3.4E-07 51.9 3.5 25 182-206 97-121 (425)
401 2pt7_A CAG-ALFA; ATPase, prote 95.3 0.0063 2.2E-07 51.4 2.2 23 184-206 172-194 (330)
402 3eph_A TRNA isopentenyltransfe 95.3 0.01 3.4E-07 51.5 3.4 23 184-206 3-25 (409)
403 2fu5_C RAS-related protein RAB 95.3 0.0055 1.9E-07 46.3 1.6 25 182-206 7-31 (183)
404 3ozx_A RNAse L inhibitor; ATP 95.3 0.0085 2.9E-07 54.0 3.0 23 184-206 295-317 (538)
405 1yqt_A RNAse L inhibitor; ATP- 95.3 0.0097 3.3E-07 53.6 3.3 23 183-205 47-69 (538)
406 1g8f_A Sulfate adenylyltransfe 95.2 0.02 6.8E-07 51.2 5.1 45 163-207 375-419 (511)
407 3euj_A Chromosome partition pr 95.2 0.01 3.5E-07 52.7 3.3 22 184-205 30-51 (483)
408 1wf3_A GTP-binding protein; GT 95.2 0.014 4.7E-07 48.6 3.9 26 182-207 6-31 (301)
409 2dpy_A FLII, flagellum-specifi 95.2 0.01 3.5E-07 52.1 3.2 25 183-207 157-181 (438)
410 3ozx_A RNAse L inhibitor; ATP 95.2 0.01 3.4E-07 53.5 3.2 25 182-206 24-48 (538)
411 1mky_A Probable GTP-binding pr 95.2 0.026 8.8E-07 49.4 5.7 44 164-207 152-204 (439)
412 2qag_C Septin-7; cell cycle, c 95.2 0.0094 3.2E-07 52.0 2.8 21 186-206 34-54 (418)
413 3upu_A ATP-dependent DNA helic 95.2 0.027 9.1E-07 49.6 5.8 35 169-206 34-68 (459)
414 1u0l_A Probable GTPase ENGC; p 95.1 0.011 3.8E-07 49.1 3.1 33 169-206 160-192 (301)
415 3bk7_A ABC transporter ATP-bin 95.1 0.011 3.9E-07 54.0 3.3 23 184-206 383-405 (607)
416 1u0j_A DNA replication protein 95.1 0.024 8.4E-07 46.3 4.9 37 170-206 91-127 (267)
417 3t5d_A Septin-7; GTP-binding p 95.1 0.0097 3.3E-07 48.6 2.6 24 183-206 8-31 (274)
418 2xtp_A GTPase IMAP family memb 95.1 0.016 5.3E-07 46.8 3.8 26 182-207 21-46 (260)
419 2axn_A 6-phosphofructo-2-kinas 95.1 0.014 4.9E-07 52.3 3.8 25 182-206 34-58 (520)
420 3ld9_A DTMP kinase, thymidylat 95.1 0.017 5.6E-07 46.0 3.8 53 182-234 20-74 (223)
421 1jwy_B Dynamin A GTPase domain 95.1 0.011 3.7E-07 49.1 2.8 27 181-207 22-48 (315)
422 3ch4_B Pmkase, phosphomevalona 95.1 0.014 4.9E-07 45.6 3.2 25 182-206 10-34 (202)
423 1t9h_A YLOQ, probable GTPase E 95.1 0.0059 2E-07 51.1 1.1 23 184-206 174-196 (307)
424 2zr9_A Protein RECA, recombina 95.1 0.017 6E-07 49.1 4.1 37 182-220 60-96 (349)
425 3j16_B RLI1P; ribosome recycli 95.1 0.012 4.2E-07 53.8 3.3 23 184-206 379-401 (608)
426 2g3y_A GTP-binding protein GEM 95.0 0.013 4.4E-07 46.1 3.0 24 182-205 36-59 (211)
427 1f2t_A RAD50 ABC-ATPase; DNA d 95.0 0.017 5.8E-07 42.8 3.5 23 183-205 23-45 (149)
428 4dhe_A Probable GTP-binding pr 95.0 0.0084 2.9E-07 46.9 1.9 26 182-207 28-53 (223)
429 3cpj_B GTP-binding protein YPT 95.0 0.014 4.7E-07 45.9 3.1 26 182-207 12-37 (223)
430 3gmt_A Adenylate kinase; ssgci 95.0 0.014 4.8E-07 46.6 3.1 22 185-206 10-31 (230)
431 3j16_B RLI1P; ribosome recycli 95.0 0.013 4.5E-07 53.5 3.3 24 183-206 103-126 (608)
432 3io5_A Recombination and repai 94.9 0.064 2.2E-06 45.0 7.1 42 184-225 29-72 (333)
433 3ea0_A ATPase, para family; al 94.9 0.016 5.6E-07 46.0 3.4 25 182-206 3-28 (245)
434 2qag_A Septin-2, protein NEDD5 94.9 0.011 3.7E-07 50.6 2.4 46 160-206 15-60 (361)
435 3b1v_A Ferrous iron uptake tra 94.9 0.018 6E-07 47.2 3.6 24 183-206 3-26 (272)
436 4hlc_A DTMP kinase, thymidylat 94.9 0.018 6.3E-07 45.1 3.5 23 184-206 3-25 (205)
437 1ypw_A Transitional endoplasmi 94.9 0.0083 2.9E-07 56.7 1.8 48 159-206 476-534 (806)
438 3lxw_A GTPase IMAP family memb 94.9 0.015 5.3E-07 46.7 3.1 25 183-207 21-45 (247)
439 3a1s_A Iron(II) transport prot 94.9 0.019 6.5E-07 46.6 3.7 25 182-206 4-28 (258)
440 1bif_A 6-phosphofructo-2-kinas 94.9 0.017 5.9E-07 51.0 3.7 25 182-206 38-62 (469)
441 2qtf_A Protein HFLX, GTP-bindi 94.8 0.014 4.8E-07 50.0 2.9 26 182-207 178-203 (364)
442 1u94_A RECA protein, recombina 94.8 0.022 7.6E-07 48.6 4.2 41 182-224 62-104 (356)
443 2qmh_A HPR kinase/phosphorylas 94.8 0.019 6.5E-07 44.9 3.4 24 183-206 34-57 (205)
444 2r6a_A DNAB helicase, replicat 94.8 0.054 1.8E-06 47.6 6.7 51 182-233 202-252 (454)
445 3f9v_A Minichromosome maintena 94.8 0.011 3.7E-07 54.0 2.2 45 162-206 297-350 (595)
446 4dkx_A RAS-related protein RAB 94.8 0.018 6.1E-07 45.5 3.2 22 185-206 15-36 (216)
447 3b5x_A Lipid A export ATP-bind 94.8 0.015 5.1E-07 52.9 3.1 23 183-205 369-391 (582)
448 3b60_A Lipid A export ATP-bind 94.8 0.015 5E-07 52.9 3.1 23 183-205 369-391 (582)
449 3k9g_A PF-32 protein; ssgcid, 94.8 0.016 5.4E-07 46.9 3.0 28 181-208 25-53 (267)
450 3bk7_A ABC transporter ATP-bin 94.8 0.015 5.2E-07 53.1 3.1 24 183-206 117-140 (607)
451 2yc2_C IFT27, small RAB-relate 94.7 0.0068 2.3E-07 46.6 0.5 24 183-206 20-43 (208)
452 2aka_B Dynamin-1; fusion prote 94.7 0.039 1.3E-06 45.2 5.2 39 169-207 8-50 (299)
453 3fdi_A Uncharacterized protein 94.6 0.021 7.1E-07 44.5 3.2 23 184-206 7-29 (201)
454 2oap_1 GSPE-2, type II secreti 94.6 0.015 5.1E-07 52.1 2.6 22 185-206 262-283 (511)
455 2q6t_A DNAB replication FORK h 94.6 0.095 3.3E-06 45.9 7.7 54 181-235 198-251 (444)
456 2gno_A DNA polymerase III, gam 94.5 0.038 1.3E-06 46.0 4.8 70 164-237 1-75 (305)
457 3q9l_A Septum site-determining 94.5 0.023 8E-07 45.5 3.3 23 183-205 2-25 (260)
458 1x6v_B Bifunctional 3'-phospho 94.5 0.024 8.1E-07 52.0 3.6 25 182-206 51-75 (630)
459 3tmk_A Thymidylate kinase; pho 94.5 0.024 8E-07 44.9 3.2 25 183-207 5-29 (216)
460 2e87_A Hypothetical protein PH 94.5 0.022 7.6E-07 48.4 3.2 27 181-207 165-191 (357)
461 2orw_A Thymidine kinase; TMTK, 94.5 0.022 7.6E-07 43.7 3.0 20 184-203 4-23 (184)
462 1m8p_A Sulfate adenylyltransfe 94.4 0.026 8.7E-07 51.3 3.8 25 182-206 395-419 (573)
463 3r7w_A Gtpase1, GTP-binding pr 94.4 0.022 7.6E-07 47.4 3.1 23 184-206 4-26 (307)
464 4djt_A GTP-binding nuclear pro 94.4 0.0084 2.9E-07 46.8 0.5 25 182-206 10-34 (218)
465 2zts_A Putative uncharacterize 94.4 0.047 1.6E-06 43.2 4.9 50 182-232 29-78 (251)
466 3fkq_A NTRC-like two-domain pr 94.4 0.028 9.7E-07 48.1 3.8 26 181-206 141-167 (373)
467 1ni3_A YCHF GTPase, YCHF GTP-b 94.4 0.023 7.7E-07 49.1 3.2 25 182-206 19-43 (392)
468 2yl4_A ATP-binding cassette SU 94.4 0.015 5.1E-07 53.0 2.1 24 183-206 370-393 (595)
469 4a1f_A DNAB helicase, replicat 94.4 0.11 3.7E-06 44.0 7.3 52 182-235 45-96 (338)
470 3i8s_A Ferrous iron transport 94.4 0.024 8.1E-07 46.4 3.1 25 183-207 3-27 (274)
471 2hjg_A GTP-binding protein ENG 94.4 0.05 1.7E-06 47.6 5.4 44 164-207 151-199 (436)
472 3th5_A RAS-related C3 botulinu 93.4 0.0073 2.5E-07 46.6 0.0 25 182-206 29-53 (204)
473 3qf4_A ABC transporter, ATP-bi 94.4 0.024 8.1E-07 51.7 3.4 23 183-205 369-391 (587)
474 2ck3_D ATP synthase subunit be 94.3 0.043 1.5E-06 48.5 4.8 63 171-235 142-207 (482)
475 2r8r_A Sensor protein; KDPD, P 94.3 0.025 8.6E-07 45.0 3.1 23 184-206 7-29 (228)
476 2gks_A Bifunctional SAT/APS ki 94.3 0.052 1.8E-06 49.0 5.5 25 182-206 371-395 (546)
477 3qf4_B Uncharacterized ABC tra 94.3 0.017 5.8E-07 52.7 2.3 24 182-205 380-403 (598)
478 1fx0_B ATP synthase beta chain 94.3 0.049 1.7E-06 48.3 5.1 62 172-235 155-219 (498)
479 3ez2_A Plasmid partition prote 94.3 0.048 1.7E-06 46.9 5.1 27 180-206 105-132 (398)
480 2wkq_A NPH1-1, RAS-related C3 94.2 0.047 1.6E-06 45.2 4.7 27 181-207 153-179 (332)
481 1tf7_A KAIC; homohexamer, hexa 94.2 0.026 8.7E-07 50.7 3.2 21 183-203 39-59 (525)
482 4a82_A Cystic fibrosis transme 94.2 0.014 4.9E-07 53.0 1.5 24 182-205 366-389 (578)
483 3gj0_A GTP-binding nuclear pro 94.2 0.018 6.3E-07 45.0 2.0 22 182-203 14-35 (221)
484 1f5n_A Interferon-induced guan 94.1 0.05 1.7E-06 49.5 4.8 33 175-207 30-62 (592)
485 1a5t_A Delta prime, HOLB; zinc 94.1 0.065 2.2E-06 45.0 5.3 40 166-206 8-47 (334)
486 1puj_A YLQF, conserved hypothe 94.1 0.066 2.3E-06 44.0 5.2 26 182-207 119-144 (282)
487 1g3q_A MIND ATPase, cell divis 94.0 0.034 1.1E-06 43.9 3.3 24 183-206 2-26 (237)
488 2o5v_A DNA replication and rep 94.0 0.036 1.2E-06 47.3 3.6 23 183-205 26-48 (359)
489 1xp8_A RECA protein, recombina 94.0 0.043 1.5E-06 46.9 4.1 37 182-220 73-109 (366)
490 3qks_A DNA double-strand break 94.0 0.04 1.4E-06 42.9 3.5 22 183-204 23-44 (203)
491 3szr_A Interferon-induced GTP- 93.9 0.033 1.1E-06 50.9 3.4 26 181-206 43-68 (608)
492 1qhl_A Protein (cell division 93.8 0.0056 1.9E-07 48.9 -1.7 21 185-205 29-49 (227)
493 1sky_E F1-ATPase, F1-ATP synth 93.8 0.048 1.6E-06 48.1 4.1 48 185-233 153-203 (473)
494 3bgw_A DNAB-like replicative h 93.8 0.12 4E-06 45.4 6.6 52 181-234 195-246 (444)
495 2ph1_A Nucleotide-binding prot 93.8 0.036 1.2E-06 44.8 3.1 25 182-206 17-42 (262)
496 2iw3_A Elongation factor 3A; a 93.8 0.033 1.1E-06 53.5 3.2 23 183-205 461-483 (986)
497 1tf7_A KAIC; homohexamer, hexa 93.8 0.035 1.2E-06 49.8 3.2 25 182-206 280-304 (525)
498 1jal_A YCHF protein; nucleotid 93.8 0.036 1.2E-06 47.4 3.1 23 185-207 4-26 (363)
499 2xj4_A MIPZ; replication, cell 93.8 0.033 1.1E-06 45.7 2.9 24 183-206 4-28 (286)
500 3hdt_A Putative kinase; struct 93.7 0.042 1.4E-06 43.6 3.3 24 183-206 14-37 (223)
No 1
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.73 E-value=3.9e-17 Score=118.33 Aligned_cols=85 Identities=16% Similarity=0.152 Sum_probs=77.2
Q ss_pred chHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccCCCCccchHHHHHHHHHHHHHH
Q 042580 3 INFRLFSERLRRLIEGEEGTLPDATKEQFQNLYTEIEIVTSLLSNYENDMFQILFQSLGGEEEFVFSEVQGILKEMKDFV 82 (241)
Q Consensus 3 avv~~~~~kl~~~l~~~~~~~~~~~~~~~~~L~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~Wl~~vr~~~ 82 (241)
|+++++++||.+++.+| +.++.+++++++.|+++|+.|++||.+++.+..+. .+ +.++.|+.+||+++
T Consensus 1 a~v~~ll~KL~~ll~~E-~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~-------~d----~~vk~W~~~vrdla 68 (115)
T 3qfl_A 1 AAISNLIPKLGELLTEE-FKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQ-------LD----SQDKLWADEVRELS 68 (115)
T ss_dssp CTTCSHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG-------CC----HHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH-HHHHhchHHHHHHHHHHHHHHHHHHHHHHHhcccc-------CC----HHHHHHHHHHHHHH
Confidence 67889999999999999 99999999999999999999999999998762133 67 89999999999999
Q ss_pred HhhHHHHHHHHHHHhhh
Q 042580 83 HESEKVIYTFMISRITQ 99 (241)
Q Consensus 83 ~~~ed~ld~~~~~~~~~ 99 (241)
||+||+||+|.++....
T Consensus 69 YD~ED~iD~f~~~~~~~ 85 (115)
T 3qfl_A 69 YVIEDVVDKFLVQVDGI 85 (115)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999999987653
No 2
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.61 E-value=1.3e-15 Score=138.54 Aligned_cols=77 Identities=14% Similarity=0.217 Sum_probs=69.0
Q ss_pred ccchHHHHHHHHHHhcC-CCCeEEEEEEcCCCccHHHHHHHHHh--ccccccCCCeeEEEe--CC--CCHHHHHHHHHHH
Q 042580 163 MGLEDEIEELLDLLIVG-EPSLFIVAIVGNSGFDKTNFAGEAYN--NNYAKNYFDCRAWVG--CE--YYLHKVLDSIIKS 235 (241)
Q Consensus 163 vG~~~~~~~l~~~L~~~-~~~~~vI~IvG~gGvGKTTLak~v~~--~~~v~~~F~~~~wV~--~~--~~~~~il~~Il~~ 235 (241)
+||+.++++|.++|..+ +...++|+||||||+||||||+.+|+ +..+..+|++++||+ +. +++.+++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 69999999999999764 44689999999999999999999999 678999999999999 33 4899999999999
Q ss_pred hCCC
Q 042580 236 VMPR 239 (241)
Q Consensus 236 l~~~ 239 (241)
++..
T Consensus 211 l~~~ 214 (549)
T 2a5y_B 211 LKSE 214 (549)
T ss_dssp HTTT
T ss_pred HhcC
Confidence 9753
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.31 E-value=1.8e-12 Score=123.50 Aligned_cols=73 Identities=19% Similarity=0.048 Sum_probs=65.0
Q ss_pred cccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhccccccCCCe-eEEEe--CCCCHHHHHHHHHHH
Q 042580 162 IMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDC-RAWVG--CEYYLHKVLDSIIKS 235 (241)
Q Consensus 162 ~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~-~~wV~--~~~~~~~il~~Il~~ 235 (241)
.+||+.++++|.++|...+ ..++|+|+||||+||||||+.+|++..+..+|++ ++||+ +.++...++..|++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~l 205 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4999999999999998643 3899999999999999999999998888999997 89999 778888888888774
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.31 E-value=2.2e-12 Score=126.49 Aligned_cols=81 Identities=17% Similarity=0.146 Sum_probs=62.9
Q ss_pred ccCCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhcccc-ccCC-CeeEEEe-CCC---CHHHHHHH
Q 042580 158 KKRNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYA-KNYF-DCRAWVG-CEY---YLHKVLDS 231 (241)
Q Consensus 158 ~~~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v-~~~F-~~~~wV~-~~~---~~~~il~~ 231 (241)
+...++||+.++++|.++|...+...++|+|+||||+||||||+++|++..+ ..+| +.+.||+ ... +....+..
T Consensus 122 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 201 (1249)
T 3sfz_A 122 RPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQN 201 (1249)
T ss_dssp CCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHH
T ss_pred CCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHH
Confidence 4456899999999999999876667999999999999999999999998654 4455 5567999 332 23444666
Q ss_pred HHHHhCC
Q 042580 232 IIKSVMP 238 (241)
Q Consensus 232 Il~~l~~ 238 (241)
++..+..
T Consensus 202 ~~~~l~~ 208 (1249)
T 3sfz_A 202 LCMRLDQ 208 (1249)
T ss_dssp HHHHHTT
T ss_pred HHHHhhh
Confidence 6666643
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.20 E-value=3.2e-11 Score=110.26 Aligned_cols=74 Identities=18% Similarity=0.149 Sum_probs=61.1
Q ss_pred cCCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhcccc-ccCC-CeeEEEe-CCCCHHHHHHHH
Q 042580 159 KRNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYA-KNYF-DCRAWVG-CEYYLHKVLDSI 232 (241)
Q Consensus 159 ~~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v-~~~F-~~~~wV~-~~~~~~~il~~I 232 (241)
.+.+|||+.+++.|.++|.......++|+|+||||+||||||+.+|++..+ ..+| +.++||+ ...+...++..+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~l 199 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKL 199 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHHH
Confidence 456899999999999999765456899999999999999999999998766 7889 5799999 555555555544
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.47 E-value=3.4e-07 Score=79.48 Aligned_cols=79 Identities=19% Similarity=0.153 Sum_probs=57.7
Q ss_pred CCcccchHHHHHHHHHH-hc---C-CCCeEEEEE--EcCCCccHHHHHHHHHhccccc---cCCCe-eEEEe--CCCCHH
Q 042580 160 RNIMGLEDEIEELLDLL-IV---G-EPSLFIVAI--VGNSGFDKTNFAGEAYNNNYAK---NYFDC-RAWVG--CEYYLH 226 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L-~~---~-~~~~~vI~I--vG~gGvGKTTLak~v~~~~~v~---~~F~~-~~wV~--~~~~~~ 226 (241)
..++||+.+++.|..+| .. + ......+.| +|++|+|||||++.+++..... ..|+. .+|+. ...+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 57899999999999988 42 2 012344555 9999999999999999863221 12333 46777 567888
Q ss_pred HHHHHHHHHhCC
Q 042580 227 KVLDSIIKSVMP 238 (241)
Q Consensus 227 ~il~~Il~~l~~ 238 (241)
.++..|+.+++.
T Consensus 102 ~~~~~l~~~l~~ 113 (412)
T 1w5s_A 102 TILSLIVRQTGY 113 (412)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhCC
Confidence 999999988754
No 7
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.36 E-value=8.1e-07 Score=75.14 Aligned_cols=69 Identities=13% Similarity=0.191 Sum_probs=53.6
Q ss_pred ccCCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe-CC-------CCHHHHH
Q 042580 158 KKRNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG-CE-------YYLHKVL 229 (241)
Q Consensus 158 ~~~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~-~~-------~~~~~il 229 (241)
....++||+.+++.|.+++..+ +++.|+|++|+|||||++.+.+.. + .+|+. .. .+...++
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHH
Confidence 3456899999999999998653 689999999999999999999863 2 56776 22 2667777
Q ss_pred HHHHHHhC
Q 042580 230 DSIIKSVM 237 (241)
Q Consensus 230 ~~Il~~l~ 237 (241)
..+...+.
T Consensus 79 ~~l~~~l~ 86 (350)
T 2qen_A 79 KELQSTIS 86 (350)
T ss_dssp HHHHHHSC
T ss_pred HHHHHHHH
Confidence 77766543
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.33 E-value=9.8e-07 Score=75.87 Aligned_cols=77 Identities=18% Similarity=0.062 Sum_probs=57.2
Q ss_pred CCcccchHHHHHHHHHHhc--CCCCeEEEEEEcCCCccHHHHHHHHHhccccc----cC--CCeeEEEe--CCC-CHHHH
Q 042580 160 RNIMGLEDEIEELLDLLIV--GEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAK----NY--FDCRAWVG--CEY-YLHKV 228 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~--~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~----~~--F~~~~wV~--~~~-~~~~i 228 (241)
..++|++.+++.|..+|.. .....+.+.|+|++|+||||||+.+++...-. .. ....+|+. ... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 5789999999999988854 23446789999999999999999999863111 11 23456777 444 77788
Q ss_pred HHHHHHHh
Q 042580 229 LDSIIKSV 236 (241)
Q Consensus 229 l~~Il~~l 236 (241)
+..++.++
T Consensus 100 ~~~l~~~l 107 (384)
T 2qby_B 100 LSSLAGKL 107 (384)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88877776
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.31 E-value=6e-07 Score=76.91 Aligned_cols=75 Identities=19% Similarity=0.173 Sum_probs=54.8
Q ss_pred CCcccchHHHHHHHHHHhcC--CCCeEEEEEEcCCCccHHHHHHHHHhccccccCC---CeeEEEe--CCCCHHHHHHHH
Q 042580 160 RNIMGLEDEIEELLDLLIVG--EPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYF---DCRAWVG--CEYYLHKVLDSI 232 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~--~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F---~~~~wV~--~~~~~~~il~~I 232 (241)
..++|++.+++.|.+++... ......+.|+|++|+|||||++.+.+. ....| -..+|+. ...+...++..+
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 57899999999999988642 345678999999999999999999986 33322 1346666 444556666666
Q ss_pred HHHh
Q 042580 233 IKSV 236 (241)
Q Consensus 233 l~~l 236 (241)
+.++
T Consensus 98 ~~~l 101 (386)
T 2qby_A 98 LESL 101 (386)
T ss_dssp TTTT
T ss_pred HHHh
Confidence 5544
No 10
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.25 E-value=6.3e-06 Score=70.76 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=57.0
Q ss_pred CCcccchHHHHHHHHHHhc---C-CCCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe--CCCCHHHHHHHHH
Q 042580 160 RNIMGLEDEIEELLDLLIV---G-EPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG--CEYYLHKVLDSII 233 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~---~-~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~--~~~~~~~il~~Il 233 (241)
..++|++.+++.|..++.. + ....+.+.|+|++|+|||||++.+.+.......+ ..+|+. ...+...++..++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTA-RFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCC-EEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCe-eEEEEeCccCCCHHHHHHHHH
Confidence 5689999999999998865 2 2233489999999999999999999863221112 345666 5556788888888
Q ss_pred HHhC
Q 042580 234 KSVM 237 (241)
Q Consensus 234 ~~l~ 237 (241)
..++
T Consensus 96 ~~l~ 99 (389)
T 1fnn_A 96 RSLN 99 (389)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 8764
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.25 E-value=1.6e-06 Score=74.30 Aligned_cols=79 Identities=18% Similarity=0.064 Sum_probs=57.7
Q ss_pred CCcccchHHHHHHHHHHhcC--CCCeEEEEEEcCCCccHHHHHHHHHhcccccc---CCC-eeEEEe--CCCCHHHHHHH
Q 042580 160 RNIMGLEDEIEELLDLLIVG--EPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKN---YFD-CRAWVG--CEYYLHKVLDS 231 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~--~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~---~F~-~~~wV~--~~~~~~~il~~ 231 (241)
..++|++.+++.|..+|..- ......+.|+|++|+||||||+.+.+...-.. ..+ ..+|+. ...+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 57899999999999998542 34567899999999999999999998632110 112 346666 55677777777
Q ss_pred HHHHhCC
Q 042580 232 IIKSVMP 238 (241)
Q Consensus 232 Il~~l~~ 238 (241)
|+.+++.
T Consensus 99 l~~~l~~ 105 (387)
T 2v1u_A 99 IAEAVGV 105 (387)
T ss_dssp HHHHHSC
T ss_pred HHHHhCC
Confidence 7777643
No 12
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.21 E-value=3.4e-06 Score=71.37 Aligned_cols=67 Identities=18% Similarity=0.175 Sum_probs=49.9
Q ss_pred ccCCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe-CC------CCHHHHHH
Q 042580 158 KKRNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG-CE------YYLHKVLD 230 (241)
Q Consensus 158 ~~~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~-~~------~~~~~il~ 230 (241)
....++||+.+++.|.+ +.. +++.|+|++|+|||||++.+.+... . ..+|+. .. .+...++.
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHHHHHH
Confidence 34568999999999999 643 5999999999999999999998632 2 247887 43 35566665
Q ss_pred HHHHH
Q 042580 231 SIIKS 235 (241)
Q Consensus 231 ~Il~~ 235 (241)
.+.+.
T Consensus 80 ~l~~~ 84 (357)
T 2fna_A 80 ELQKE 84 (357)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 13
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.11 E-value=3.8e-06 Score=64.39 Aligned_cols=45 Identities=18% Similarity=0.292 Sum_probs=38.7
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|++..++.+.+++.... ...+-|+|++|+||||||+.+.+.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999987643 556789999999999999999886
No 14
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.01 E-value=5.9e-06 Score=63.17 Aligned_cols=45 Identities=18% Similarity=0.252 Sum_probs=38.4
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|++..++.+.+++.... ...+-|+|.+|+||||||+.+.+.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999986633 456689999999999999999885
No 15
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.96 E-value=2e-05 Score=61.76 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=38.5
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|++..++.|..++.... ...+.|+|++|+||||||+.+.+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999997653 334899999999999999999885
No 16
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.95 E-value=9e-06 Score=64.53 Aligned_cols=47 Identities=21% Similarity=0.253 Sum_probs=39.7
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..++|++..++.|..++..+. ..+.+.|+|++|+||||||+.+.+..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999997643 24588999999999999999998753
No 17
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.88 E-value=1.6e-05 Score=67.14 Aligned_cols=77 Identities=5% Similarity=0.005 Sum_probs=56.0
Q ss_pred CcccchHHHHHHHHHHhc--CCCCeEEEEEEcCCCccHHHHHHHHHhcccccc------CCCeeEEEe--CCCCHHHHHH
Q 042580 161 NIMGLEDEIEELLDLLIV--GEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKN------YFDCRAWVG--CEYYLHKVLD 230 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~~--~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~------~F~~~~wV~--~~~~~~~il~ 230 (241)
.+.||++++..|...|.. .......+-|+|++|+|||++++.|.+.-.... .| ..+.|. .-.+...+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHHHH
Confidence 378999999999988854 234678889999999999999999998742211 12 234555 4467788888
Q ss_pred HHHHHhCC
Q 042580 231 SIIKSVMP 238 (241)
Q Consensus 231 ~Il~~l~~ 238 (241)
.|++++..
T Consensus 100 ~I~~~L~g 107 (318)
T 3te6_A 100 KIWFAISK 107 (318)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhcC
Confidence 88888854
No 18
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.69 E-value=2.8e-05 Score=57.78 Aligned_cols=46 Identities=15% Similarity=0.058 Sum_probs=35.0
Q ss_pred CcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 161 NIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++|....+..+.+.+..-.....-|-|+|..|+|||+||+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999998887542122334679999999999999999986
No 19
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.62 E-value=6e-05 Score=62.87 Aligned_cols=45 Identities=22% Similarity=0.301 Sum_probs=38.5
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|++..++.|..++..+. ...+-++|++|+||||+|+.+.+.
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH
Confidence 358999999999999987654 333889999999999999999886
No 20
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.61 E-value=7e-05 Score=62.58 Aligned_cols=45 Identities=22% Similarity=0.286 Sum_probs=38.5
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|++..++.|..++..+. ...+-++|++|+||||+|+.+.+.
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~ 69 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARE 69 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHH
Confidence 358999999999999987753 444899999999999999999875
No 21
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.53 E-value=9.9e-05 Score=60.72 Aligned_cols=48 Identities=21% Similarity=0.253 Sum_probs=38.7
Q ss_pred cCCcccchHHHHHHHHHHhcC-----------CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 159 KRNIMGLEDEIEELLDLLIVG-----------EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 159 ~~~~vG~~~~~~~l~~~L~~~-----------~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|.+..++.|.+++... -....-+-|+|++|+||||||+.+.+.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 356899999999998887431 123566889999999999999999886
No 22
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.50 E-value=0.00014 Score=56.68 Aligned_cols=51 Identities=18% Similarity=0.033 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCC--CeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe
Q 042580 168 EIEELLDLLIVGEP--SLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG 220 (241)
Q Consensus 168 ~~~~l~~~L~~~~~--~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~ 220 (241)
..+.+..++..... ....+.|+|.+|+||||||+.+++.. .......++++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~--~~~~~~~~~~~ 89 (202)
T 2w58_A 37 AIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANEL--AKRNVSSLIVY 89 (202)
T ss_dssp HHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHH--HTTTCCEEEEE
T ss_pred HHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEE
Confidence 44555566654321 12688899999999999999999863 23333445555
No 23
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.45 E-value=0.00012 Score=57.61 Aligned_cols=39 Identities=21% Similarity=0.265 Sum_probs=29.5
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 168 EIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 168 ~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.++|.+.+......-.+|+|+|..|+|||||++.+..-
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344555555433345789999999999999999998774
No 24
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.45 E-value=0.00014 Score=60.60 Aligned_cols=47 Identities=34% Similarity=0.334 Sum_probs=37.8
Q ss_pred CCcccchHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV-----------GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~-----------~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..++.|.+++.. +-...+.|.++|++|+||||||+.+.+.
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH
Confidence 4589999998888887642 1134567899999999999999999985
No 25
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.45 E-value=9.7e-05 Score=62.36 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=39.0
Q ss_pred CCcccchHHHHHHHHHHhcC---CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVG---EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~---~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..++.+..++... ......+-|+|++|+||||||+.+.+.
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999999988642 334567899999999999999999875
No 26
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.44 E-value=0.00013 Score=64.70 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=37.9
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|++..+..++..|.... ..-+-++|.+|+||||||+.+...
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999997633 344579999999999999999886
No 27
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.42 E-value=0.0002 Score=56.08 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=33.0
Q ss_pred chHHHHHHHHHHhcC-CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 165 LEDEIEELLDLLIVG-EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 165 ~~~~~~~l~~~L~~~-~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+++.++.|.+.+... .....+|+|+|..|+|||||++.+...
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345677788877653 245689999999999999999999863
No 28
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.38 E-value=0.00018 Score=58.27 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=36.1
Q ss_pred cCCcccchHHHHHHHHHHh---cCC-------CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 159 KRNIMGLEDEIEELLDLLI---VGE-------PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 159 ~~~~vG~~~~~~~l~~~L~---~~~-------~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|.+..++.|.+++. ..+ ....-+-++|++|+||||||+.+.+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3568999988888776652 111 23455779999999999999999885
No 29
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.37 E-value=0.00014 Score=61.65 Aligned_cols=46 Identities=24% Similarity=0.237 Sum_probs=35.6
Q ss_pred CcccchHHHHHHHHHHhcC---CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 161 NIMGLEDEIEELLDLLIVG---EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~~~---~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++|.+..++.|-..+..+ ...+..+.++|+.|+||||||+.+.+.
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 5678887777776666432 234578999999999999999999885
No 30
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.37 E-value=0.00011 Score=56.22 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHhcCC-CCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 166 EDEIEELLDLLIVGE-PSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 166 ~~~~~~l~~~L~~~~-~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
....+.+.+++.+-. ..-..+.|+|+.|+|||||++.+.+..
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 344445555553321 235789999999999999999998863
No 31
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.36 E-value=0.00011 Score=62.19 Aligned_cols=45 Identities=16% Similarity=0.123 Sum_probs=38.0
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|.+..++.|..++..+. ...+-++|++|+||||||+.+.+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999987653 333889999999999999999876
No 32
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.36 E-value=0.00017 Score=59.76 Aligned_cols=47 Identities=19% Similarity=0.245 Sum_probs=37.8
Q ss_pred CCcccchHHHHHHHHHHhcC----------CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVG----------EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~----------~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..++.|.+++... ......+-++|++|+||||||+.+.+.
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 46899999999998877321 123567889999999999999999885
No 33
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.36 E-value=0.00022 Score=60.72 Aligned_cols=45 Identities=22% Similarity=0.291 Sum_probs=38.3
Q ss_pred CcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 161 NIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+++|++..++.|..++..+. ..+.+-|+|+.|+||||||+.+.+.
T Consensus 17 ~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999987643 2457789999999999999999874
No 34
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.36 E-value=3.8e-05 Score=56.90 Aligned_cols=46 Identities=17% Similarity=0.120 Sum_probs=33.0
Q ss_pred CcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 161 NIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++|.+..+.++.+.+..-.....-|-|+|..|+|||+||+.+++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 5789888888888887531111233669999999999999999875
No 35
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.35 E-value=0.00019 Score=59.67 Aligned_cols=46 Identities=20% Similarity=0.280 Sum_probs=35.9
Q ss_pred CcccchHHHHHHHHHHhc-------------CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 161 NIMGLEDEIEELLDLLIV-------------GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~~-------------~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++|.+..++.|.+++.. .......+-++|++|+|||+||+.+.+.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 589999998888876531 1234567899999999999999877764
No 36
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.35 E-value=0.00021 Score=60.13 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=37.8
Q ss_pred CCcccchHHHHHHHHHHh----------cCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLI----------VGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~----------~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..++.|.+++. ......+-+-++|++|+|||+||+.+.+.
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 468999999999988772 11223467889999999999999999885
No 37
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.34 E-value=0.00023 Score=60.68 Aligned_cols=48 Identities=21% Similarity=0.197 Sum_probs=36.8
Q ss_pred CCcccchHHHHHH---HHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 160 RNIMGLEDEIEEL---LDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 160 ~~~vG~~~~~~~l---~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
++++|.+..++.+ ...+..+....+.+-++|++|+|||+||+.+.+.-
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l 94 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQAL 94 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999887764 44444443334688999999999999999999863
No 38
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.33 E-value=0.00018 Score=61.60 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=38.0
Q ss_pred CCcccchHHHHHHHHHHhc----------CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV----------GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~----------~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..++.|.+.+.. .....+.|-++|++|+||||||+.+.+.
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999887742 1123567889999999999999999875
No 39
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.32 E-value=0.00031 Score=58.41 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=24.4
Q ss_pred CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 179 GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 179 ~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
......+|+|+|..|+|||||++.+...
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456789999999999999999998774
No 40
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.31 E-value=0.00053 Score=55.81 Aligned_cols=47 Identities=23% Similarity=0.220 Sum_probs=33.9
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|.+..+..+.+.+..-.....-+-|+|..|+|||+||+.+.+.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 35789999888888777542112345679999999999999999986
No 41
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.29 E-value=0.00025 Score=57.47 Aligned_cols=47 Identities=23% Similarity=0.230 Sum_probs=34.5
Q ss_pred CCcccchHHHHHHHHHHh---cC-------CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLI---VG-------EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~---~~-------~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..++.|.+++. .. .....-+.|+|+.|+||||||+.+.+.
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 468999988877766542 11 012334789999999999999999885
No 42
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.28 E-value=0.00016 Score=59.88 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=37.4
Q ss_pred CCcccchHHHHHHHHHHhc------------CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV------------GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~------------~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|.+..++.|...+.. ......-+-++|.+|+|||+||+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999998887754 1123456779999999999999999885
No 43
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.28 E-value=0.00033 Score=59.09 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=37.2
Q ss_pred CCcccchHHHHHHHHHHhc---------C-CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV---------G-EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~---------~-~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..++.|.+.+.. + ....+-|-++|++|+|||+||+.+.+.
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 4689999999888877631 1 123467889999999999999999985
No 44
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.28 E-value=0.0003 Score=63.23 Aligned_cols=47 Identities=17% Similarity=0.174 Sum_probs=39.2
Q ss_pred CCcccchHHHHHHHHHHhcC---------------CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVG---------------EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~---------------~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|++..++.|..||... ....+.+-|+|++|+||||||+.+.+.
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998641 013578899999999999999999886
No 45
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.27 E-value=0.00015 Score=60.62 Aligned_cols=47 Identities=21% Similarity=0.227 Sum_probs=37.8
Q ss_pred CCcccchHHHHHHHHHHhc---CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV---GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~---~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|++..+..+..++.. .......+-|+|++|+||||||+.+.+.
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~ 61 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHE 61 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999988888753 1223467889999999999999999885
No 46
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.27 E-value=0.00017 Score=61.13 Aligned_cols=44 Identities=14% Similarity=0.043 Sum_probs=35.9
Q ss_pred CCcccchHHHHHHHHHH-hcCCCCeEEEEEEcCCCccHHHHHHHHHh
Q 042580 160 RNIMGLEDEIEELLDLL-IVGEPSLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L-~~~~~~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.+++|.+.....|..++ ..+. ... +.|+|+.|+|||||++.+..
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHH
Confidence 35889999999998888 4433 234 89999999999999999877
No 47
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.27 E-value=0.00043 Score=54.90 Aligned_cols=39 Identities=13% Similarity=0.085 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 166 EDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 166 ~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
......+..++... ....+.|+|++|+||||||+.+.+.
T Consensus 37 ~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 37 DELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp HHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 35555666655443 4677889999999999999999875
No 48
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.25 E-value=0.00025 Score=62.59 Aligned_cols=45 Identities=20% Similarity=0.258 Sum_probs=37.6
Q ss_pred CCcccchHHH---HHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEI---EELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~---~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..+ ..|...+..+. +..+-++|++|+||||||+.+.+.
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHH
Confidence 3589998888 67777776654 578899999999999999999986
No 49
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.24 E-value=0.00019 Score=59.63 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=37.7
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|++..++.|..++..+. ...+-++|++|+||||+|+.+.+.
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHH
Confidence 358999999999999886643 334889999999999999999875
No 50
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.21 E-value=0.00021 Score=55.07 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+|+|+|+.|+|||||++.+...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 468999999999999999999875
No 51
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.20 E-value=0.00018 Score=55.26 Aligned_cols=24 Identities=8% Similarity=0.242 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|+.|+|||||++.+...
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999999874
No 52
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.17 E-value=0.00029 Score=58.51 Aligned_cols=46 Identities=17% Similarity=0.301 Sum_probs=37.0
Q ss_pred CcccchHHHHHHHHHHhcC-------CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 161 NIMGLEDEIEELLDLLIVG-------EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~~~-------~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++|.+..++.|...+... ......+.++|..|+||||||+.+.+.
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH
Confidence 5689998888888877542 122468999999999999999999885
No 53
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.13 E-value=0.00029 Score=53.49 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
..+|.|+|++|+||||+|+.+..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 35899999999999999999987
No 54
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.13 E-value=0.00043 Score=58.56 Aligned_cols=44 Identities=18% Similarity=0.210 Sum_probs=36.2
Q ss_pred CcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 161 NIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++|.+..+..|..++..+. +..+.++|+.|+||||||+.+.+.
T Consensus 26 ~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 47898888888888887654 333889999999999999998774
No 55
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.13 E-value=0.00025 Score=53.48 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=20.5
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+|.|.|+.|+||||+++.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998754
No 56
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.12 E-value=0.00046 Score=64.87 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=38.1
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|++..++.+...|.... ..-+-++|.+|+||||+|+.+.+.
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999997633 334679999999999999999875
No 57
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.10 E-value=0.00051 Score=58.72 Aligned_cols=46 Identities=20% Similarity=0.126 Sum_probs=36.4
Q ss_pred CcccchHHHHHHHHHHh-------------cCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 161 NIMGLEDEIEELLDLLI-------------VGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~-------------~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++|.+..++.|...+. ........+.++|++|+|||++|+.+.+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 47899999998888773 11123567889999999999999999875
No 58
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.10 E-value=0.00036 Score=58.39 Aligned_cols=47 Identities=26% Similarity=0.292 Sum_probs=36.7
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+.++|....+..+.+.+..-.....-|-|+|..|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 35789999999998887552222345669999999999999999984
No 59
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.09 E-value=0.0003 Score=53.58 Aligned_cols=23 Identities=35% Similarity=0.678 Sum_probs=20.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
-.+++|+|..|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 46899999999999999997554
No 60
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.08 E-value=0.0003 Score=54.76 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=21.1
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+|+|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 58999999999999999999874
No 61
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.08 E-value=0.00025 Score=53.75 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=20.9
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+|+|+|+.|+|||||++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999874
No 62
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.07 E-value=0.00061 Score=56.07 Aligned_cols=46 Identities=30% Similarity=0.288 Sum_probs=33.3
Q ss_pred CCcccchHHHHHHHHHHhc---C---------CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV---G---------EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~---~---------~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++.|.+..++.|.+.+.. . ....+ +.++|++|+|||||++.+...
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHH
Confidence 4578888888888765421 1 11223 999999999999999999885
No 63
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.06 E-value=0.00063 Score=56.98 Aligned_cols=46 Identities=15% Similarity=0.097 Sum_probs=38.8
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..+..|..++..+. ..+++-+.|++|+||||+|+.+.+.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 468999999999999997643 3467788899999999999999876
No 64
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.06 E-value=0.00031 Score=54.74 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+|.|+|+.|+||||+++.+...
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 65
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.06 E-value=0.00033 Score=53.29 Aligned_cols=23 Identities=13% Similarity=0.112 Sum_probs=20.8
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+|.|+|++|+||||+++.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999873
No 66
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.06 E-value=0.00043 Score=65.97 Aligned_cols=45 Identities=18% Similarity=0.357 Sum_probs=38.3
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|++.++..+++.|.... ..-+.++|.+|+||||||+.+.+.
T Consensus 170 d~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999997643 445689999999999999999885
No 67
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.05 E-value=0.00071 Score=54.65 Aligned_cols=46 Identities=26% Similarity=0.384 Sum_probs=33.0
Q ss_pred CCcccchHHHHHHHHHHhc--C---------CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV--G---------EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~--~---------~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..+.++.++... . ....+ +.|+|+.|+|||||++.+.+.
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 4678988777666654321 1 11123 899999999999999999885
No 68
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.03 E-value=0.00042 Score=54.06 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.-.+|+|+|+.|+|||||++.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999875
No 69
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.03 E-value=0.00036 Score=53.73 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.8
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+|+|+|+.|+|||||++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 57999999999999999999863
No 70
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.02 E-value=0.00041 Score=52.69 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+|+|+|+.|+|||||++.+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 468999999999999999998763
No 71
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.02 E-value=0.00059 Score=58.94 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=37.8
Q ss_pred CCcccchHHHHHHHHHHhc----C------CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV----G------EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~----~------~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..++.|..++.. . ....+-+-|+|..|+|||+||+.|.+.
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999999988732 0 122467889999999999999999875
No 72
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.02 E-value=0.00057 Score=58.41 Aligned_cols=47 Identities=21% Similarity=0.313 Sum_probs=36.7
Q ss_pred CCcccchHHHHHHHHHHhc----------CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV----------GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~----------~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..++.|.+.+.. .....+-|-++|++|+|||+||+.+.+.
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999887631 1122345789999999999999999985
No 73
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.01 E-value=0.00073 Score=63.44 Aligned_cols=45 Identities=27% Similarity=0.296 Sum_probs=38.1
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|++..+..+++.|.... ..-+-++|.+|+||||||+.+.+.
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~ 230 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999987643 445679999999999999999875
No 74
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.01 E-value=0.00069 Score=56.85 Aligned_cols=39 Identities=23% Similarity=0.115 Sum_probs=28.9
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 168 EIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 168 ~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
....+..++.........+-|+|++|+||||||+.+.+.
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 344455555443334677899999999999999999985
No 75
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.01 E-value=0.0011 Score=54.24 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=35.3
Q ss_pred CCcccchHHHHHHHH-------HHhc-CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLD-------LLIV-GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~-------~L~~-~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|.....++++. .+.. ......-+-++|++|+|||+||+.+.+.
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 356787777666665 2321 2345788899999999999999999985
No 76
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.01 E-value=0.00042 Score=54.30 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+|+|+|..|+|||||++.+..-
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999874
No 77
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.00 E-value=0.00026 Score=57.69 Aligned_cols=47 Identities=26% Similarity=0.336 Sum_probs=34.2
Q ss_pred CCcccchHHHHHHHHHHhc----------CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV----------GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~----------~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..++.|.+.+.. +.....-+-++|++|+||||||+.+.+.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 4688988777777765531 1111233679999999999999999985
No 78
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.99 E-value=0.0004 Score=54.16 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.-.+|+|+|+.|+|||||++.+...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3579999999999999999999764
No 79
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.98 E-value=0.00049 Score=52.92 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+|.|+|+.|+||||+++.+...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999764
No 80
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.98 E-value=0.00075 Score=59.47 Aligned_cols=47 Identities=21% Similarity=0.313 Sum_probs=37.7
Q ss_pred CCcccchHHHHHHHHHHhc----------CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV----------GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~----------~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..++.|.+.+.. .....+-|-++|++|+|||+||+.+.+.
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~ 190 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATE 190 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999887631 1123467889999999999999999985
No 81
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.97 E-value=0.00043 Score=53.89 Aligned_cols=24 Identities=17% Similarity=0.403 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+|+|+|+.|+|||||++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999875
No 82
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.96 E-value=0.00045 Score=52.95 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.7
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+|.|.|+.|+||||+++.+.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999763
No 83
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.95 E-value=0.00055 Score=53.54 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=23.1
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
....+|+|+|+.|+|||||++.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34679999999999999999999875
No 84
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.94 E-value=0.00074 Score=55.43 Aligned_cols=46 Identities=26% Similarity=0.384 Sum_probs=33.6
Q ss_pred CCcccchHHHHHHHHHHhc--C---------CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV--G---------EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~--~---------~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..+.++.++... . ..... +.|+|+.|+|||||++.+.+.
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 4688988877776665421 1 11123 899999999999999999875
No 85
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.94 E-value=0.0027 Score=53.66 Aligned_cols=26 Identities=23% Similarity=0.288 Sum_probs=23.4
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
....+|+|+|..|+|||||++.+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999875
No 86
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.94 E-value=0.00037 Score=54.35 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+|.|+|+.|+|||||++.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999765
No 87
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.94 E-value=0.00035 Score=54.62 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
-++++|+|+.|+|||||++.+..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 35789999999999999999976
No 88
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.93 E-value=0.001 Score=52.53 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 168 EIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 168 ~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+.+...+.. .....|.|+|.+|+|||||+..+...
T Consensus 25 ~a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 25 LADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 34445444433 35889999999999999999998875
No 89
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.93 E-value=0.00051 Score=54.03 Aligned_cols=25 Identities=16% Similarity=0.393 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.-.+|+|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3568999999999999999999875
No 90
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.93 E-value=0.00069 Score=53.28 Aligned_cols=43 Identities=19% Similarity=0.133 Sum_probs=31.9
Q ss_pred cccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 162 IMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 162 ~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+-+..+..+.+...+... ...+|+|+|.+|+|||||+..+...
T Consensus 11 l~~~~~~~~~~~~~~~~~--~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 11 LAENKRLAEKNREALRES--GTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CHHHHHHHHHHHHHHHHH--TCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HhhcHHHHHHHHHhhccc--CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 334455566666655433 4889999999999999999998765
No 91
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.91 E-value=0.00051 Score=54.38 Aligned_cols=22 Identities=23% Similarity=0.280 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHHh
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.+|+|+|+.|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999865
No 92
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.91 E-value=0.0011 Score=58.67 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=36.2
Q ss_pred CCcccchHHHHHHHHHH---hcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLL---IVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L---~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|.+..++.+..++ ..+....+-+-++|++|+|||+||+.+.+.
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 56899998887665544 334333456789999999999999999986
No 93
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.90 E-value=0.0012 Score=56.23 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=32.1
Q ss_pred ccchHHHHHHHHHHhc--CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 163 MGLEDEIEELLDLLIV--GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 163 vG~~~~~~~l~~~L~~--~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
++.+.-.+.+++.|.. .......|.++|+.|+||||+++.+...
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 3445556666666632 2345678999999999999999988774
No 94
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.90 E-value=0.00049 Score=52.71 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...|.++|+.|+||||+++.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999764
No 95
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.90 E-value=0.00039 Score=54.39 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+|.|+|+.|+|||||++.+...
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999875
No 96
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.89 E-value=0.00066 Score=52.61 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+..+|+|+|+.|+||||+++.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45789999999999999999998653
No 97
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.89 E-value=0.00049 Score=51.35 Aligned_cols=26 Identities=12% Similarity=0.110 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.-..+.|+|..|+|||||++.+++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999853
No 98
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.88 E-value=0.00063 Score=52.23 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
..+|.|+|+.|+||||+++.+.+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 99
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.88 E-value=0.00068 Score=52.74 Aligned_cols=26 Identities=12% Similarity=0.267 Sum_probs=22.9
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
....+|.|+|+.|+||||+++.+.+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999999864
No 100
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.88 E-value=0.0011 Score=55.89 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=23.1
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
....+|+|.|..|+|||||++.+..-
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 55789999999999999999999764
No 101
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.87 E-value=0.00056 Score=53.66 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|+.|+|||||++.+..-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999763
No 102
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.87 E-value=0.00065 Score=55.03 Aligned_cols=26 Identities=12% Similarity=0.281 Sum_probs=22.6
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+..+|+|.|+.|+||||+|+.+.+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999774
No 103
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.85 E-value=0.0007 Score=56.88 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=23.3
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..-.+|+|+|..|+|||||++.+..-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 45789999999999999999999874
No 104
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.85 E-value=0.00059 Score=54.98 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
..+|+|+|+.|+|||||++.+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999984
No 105
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.84 E-value=0.0011 Score=55.77 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=35.2
Q ss_pred CcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 161 NIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++|.+..+..+...+..+ .-+-++|.+|+|||+||+.+.+.
T Consensus 28 ~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHH
T ss_pred ceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHH
Confidence 5789999898888887663 25778999999999999999873
No 106
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.0011 Score=58.03 Aligned_cols=47 Identities=21% Similarity=0.247 Sum_probs=37.5
Q ss_pred CCcccchHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV-----------GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~-----------~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++.|.+..++.|.+.+.- +-...+-|-++|++|+|||+||+.|.+.
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999888876531 2244667889999999999999999985
No 107
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.83 E-value=0.00073 Score=51.88 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.-.+|.|+|+.|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999875
No 108
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.83 E-value=0.00064 Score=51.29 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+|.|.|+.|+||||+++.+.+.
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999999774
No 109
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.82 E-value=0.00052 Score=52.37 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+|.|+|+.|+||||+++.+.+.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 467889999999999999999864
No 110
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.82 E-value=0.0014 Score=54.28 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcC---CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 168 EIEELLDLLIVG---EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 168 ~~~~l~~~L~~~---~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-+++++.-++.+ .....+|.|+|++|+|||||++.+.+.
T Consensus 15 ~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344444444432 245689999999999999999999764
No 111
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.82 E-value=0.00074 Score=52.70 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHHh
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999965
No 112
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.82 E-value=0.00069 Score=52.21 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+|.|+|+.|+||||+++.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999764
No 113
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.81 E-value=0.00077 Score=54.91 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+|.|+|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 568999999999999999999874
No 114
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.80 E-value=0.0016 Score=55.60 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 169 IEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 169 ~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...++..+.....+..+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 44555555544456889999999999999999998653
No 115
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.79 E-value=0.00057 Score=54.24 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|+.|+|||||++.+..-
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999999764
No 116
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.79 E-value=0.00084 Score=50.63 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.-.+++++|..|+|||||++.+..-
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3569999999999999999999874
No 117
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.79 E-value=0.001 Score=51.01 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+|.|+|+.|+||||+++.+.+.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999764
No 118
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.79 E-value=0.00074 Score=56.78 Aligned_cols=25 Identities=16% Similarity=0.283 Sum_probs=20.9
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHh
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
...+||+|.|-|||||||.+-.+--
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 3589999999999999998876654
No 119
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.78 E-value=0.0012 Score=58.89 Aligned_cols=47 Identities=17% Similarity=0.214 Sum_probs=37.8
Q ss_pred CCcccchHHHHHHHHHHhcC-----------CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVG-----------EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~-----------~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|.+..+..|.+++... .....-+-|+|.+|+|||+||+.+.+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~ 261 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH
Confidence 35899999999998877421 233556889999999999999999875
No 120
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.77 E-value=0.00076 Score=51.48 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+|+|+|..|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999999875
No 121
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.77 E-value=0.0014 Score=56.23 Aligned_cols=47 Identities=19% Similarity=0.155 Sum_probs=35.9
Q ss_pred CCcccchHHHHHHHHHHhc----------------------------CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV----------------------------GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~----------------------------~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|.+..++.|...+.. .......+-++|++|+||||||+.+.+.
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 3578999888888877621 0112456889999999999999999885
No 122
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.77 E-value=0.00085 Score=52.28 Aligned_cols=24 Identities=21% Similarity=0.115 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+|.|.|+.|+||||+++.+.+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 123
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.77 E-value=0.00088 Score=51.24 Aligned_cols=23 Identities=22% Similarity=0.127 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
-.+|.++|+.|+||||+++.+.+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999975
No 124
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.76 E-value=0.00065 Score=51.64 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.5
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+|.|+|+.|+||||+++.+...
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999764
No 125
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.76 E-value=0.00092 Score=53.88 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.-.+|+|+|..|+|||||++.+...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999998773
No 126
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.76 E-value=0.00076 Score=52.80 Aligned_cols=25 Identities=12% Similarity=0.324 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.-++|+|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3578999999999999999999874
No 127
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.75 E-value=0.00082 Score=51.90 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+|.|+|+.|+||||+++.+...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999774
No 128
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.74 E-value=0.00088 Score=51.48 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+|.|+|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999775
No 129
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.73 E-value=0.00085 Score=53.40 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|+.|+|||||++.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 568999999999999999999875
No 130
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.73 E-value=0.0015 Score=53.01 Aligned_cols=41 Identities=20% Similarity=0.219 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHhcC---CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 166 EDEIEELLDLLIVG---EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 166 ~~~~~~l~~~L~~~---~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+...+.++..++.+ .....+|.++|++|+||||+++.+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 12 KHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34445555545432 244689999999999999999999774
No 131
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.72 E-value=0.0008 Score=54.58 Aligned_cols=22 Identities=18% Similarity=0.228 Sum_probs=20.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHH
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAY 204 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~ 204 (241)
-.+|+|+|+.|+|||||++.+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4699999999999999999997
No 132
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.0014 Score=57.40 Aligned_cols=47 Identities=26% Similarity=0.377 Sum_probs=37.6
Q ss_pred CCcccchHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV-----------GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~-----------~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++.|.+..++.|.+.+.. +-...+-|-++|++|+|||+||+.|.+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 4588999999998876421 2244677889999999999999999985
No 133
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.0015 Score=57.30 Aligned_cols=47 Identities=28% Similarity=0.313 Sum_probs=37.1
Q ss_pred CCcccchHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV-----------GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~-----------~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++.|.+..++.|.+.+.- +-...+=|-++|++|+|||+||+.|.+.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 3578899988888776531 2234677889999999999999999885
No 134
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.70 E-value=0.0022 Score=53.64 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=23.1
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
....+|+|+|..|+|||||++.+..-
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999999874
No 135
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.70 E-value=0.00098 Score=50.07 Aligned_cols=22 Identities=9% Similarity=0.052 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.|.|.|+.|+||||+++.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999774
No 136
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.70 E-value=0.0018 Score=52.14 Aligned_cols=39 Identities=13% Similarity=-0.043 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 168 EIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 168 ~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+.++...+........+|.|.|+.|+||||+++.+.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 14 LLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp HHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 344444433332235778999999999999999999764
No 137
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.69 E-value=0.00095 Score=55.85 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+|+|+|.+|+|||||++.+..-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4679999999999999999999864
No 138
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.69 E-value=0.0009 Score=63.33 Aligned_cols=47 Identities=17% Similarity=0.265 Sum_probs=37.6
Q ss_pred CCcccchHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV-----------GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~-----------~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..+++|.+++.. +-.....|.++|.+|+||||||+.+.+.
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~ 261 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 4689999888888887742 1133467899999999999999999875
No 139
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.67 E-value=0.00091 Score=53.77 Aligned_cols=23 Identities=26% Similarity=0.166 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|+.|+|||||++.+.-
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999986
No 140
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.67 E-value=0.00097 Score=53.84 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=22.4
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.. .+++|+|..|+|||||++.+.--
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 35 79999999999999999999873
No 141
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.67 E-value=0.001 Score=51.70 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+|.|+|+.|+||||+++.+...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999764
No 142
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.66 E-value=0.0021 Score=57.03 Aligned_cols=47 Identities=26% Similarity=0.319 Sum_probs=34.8
Q ss_pred CCcccchHHHHHHHHHHhc--C--------CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV--G--------EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~--~--------~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.+..+++|.+++.. . -.-.+-|.++|++|+||||||+.|.+.
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4689999888777776421 1 112234779999999999999999985
No 143
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.66 E-value=0.00075 Score=51.62 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=20.2
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+|.|+|+.|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998663
No 144
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.65 E-value=0.0011 Score=52.35 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=28.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhccccc----cCCCeeEEEe
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNNYAK----NYFDCRAWVG 220 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~~v~----~~F~~~~wV~ 220 (241)
.-.+++|+|..|+|||||++.+....... ..-...+|+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~ 66 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWID 66 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEE
Confidence 35799999999999999999997632111 1234577887
No 145
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.65 E-value=0.0009 Score=53.39 Aligned_cols=23 Identities=26% Similarity=0.115 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|..|+|||||++.+..
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999999986
No 146
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.0014 Score=56.87 Aligned_cols=47 Identities=23% Similarity=0.294 Sum_probs=36.9
Q ss_pred CCcccchHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV-----------GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~-----------~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+++.|.+..+++|.+.+.- +-...+-|-++|++|+|||.||+.|.+.
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 4578999998888876531 2234567889999999999999999885
No 147
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.64 E-value=0.0011 Score=51.86 Aligned_cols=24 Identities=8% Similarity=0.059 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+|.|+|+.|+||||+++.+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 148
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.64 E-value=0.0012 Score=55.10 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.-.+++|+|..|+|||||++.+...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999875
No 149
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.64 E-value=0.00091 Score=50.47 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.6
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+|.|+|+.|+||||+++.+.+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999774
No 150
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.63 E-value=0.0011 Score=53.09 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHH
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAY 204 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~ 204 (241)
-.+++|+|+.|+|||||++.+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 5789999999999999999887
No 151
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.63 E-value=0.0012 Score=54.52 Aligned_cols=25 Identities=28% Similarity=0.481 Sum_probs=22.1
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHh
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
....+|+|+|+.|+||||+++.+-.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3468999999999999999999873
No 152
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.62 E-value=0.00066 Score=51.91 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+++|+|..|+|||||++.+..-
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 153
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.60 E-value=0.0011 Score=51.64 Aligned_cols=24 Identities=8% Similarity=-0.094 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+|.|.|+.|+||||+++.+.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 154
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.60 E-value=0.0022 Score=57.27 Aligned_cols=43 Identities=19% Similarity=0.162 Sum_probs=35.7
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|.+..++.+...+..+ .-+-++|++|+|||+||+.+.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHH
Confidence 35789999888888877664 35779999999999999999875
No 155
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.59 E-value=0.003 Score=49.44 Aligned_cols=43 Identities=14% Similarity=0.035 Sum_probs=31.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe--CCCCHHHHH
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG--CEYYLHKVL 229 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~--~~~~~~~il 229 (241)
.-.++.|+|.+|+|||||++.+.. . .=..++|++ ..++...+.
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHH
Confidence 356899999999999999999987 1 113567777 445655544
No 156
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.59 E-value=0.0047 Score=49.03 Aligned_cols=47 Identities=9% Similarity=-0.034 Sum_probs=32.5
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcccccc----CCCeeEEEe--CCCCHHHH
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNNYAKN----YFDCRAWVG--CEYYLHKV 228 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~~v~~----~F~~~~wV~--~~~~~~~i 228 (241)
.-.++.|+|.+|+|||||++.+........ .-..++|+. ..++...+
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 75 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL 75 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH
Confidence 346999999999999999999987422211 124578888 44455444
No 157
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.59 E-value=0.0015 Score=51.38 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
..+|+|+|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999865
No 158
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.58 E-value=0.0014 Score=49.88 Aligned_cols=24 Identities=25% Similarity=0.093 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+|.|+|+.|+||||+++.+...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999774
No 159
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.58 E-value=0.0022 Score=57.01 Aligned_cols=25 Identities=28% Similarity=0.499 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.-.+|+|+|..|+|||||++.+...
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHH
Confidence 4679999999999999999999874
No 160
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.58 E-value=0.00083 Score=51.18 Aligned_cols=24 Identities=29% Similarity=0.176 Sum_probs=17.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+|.|.|+.|+||||+++.+.+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999753
No 161
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.57 E-value=0.0044 Score=51.19 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=33.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhccccccCCC-eeEEEeCCCCHHHHHHHHHHH
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFD-CRAWVGCEYYLHKVLDSIIKS 235 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~-~~~wV~~~~~~~~il~~Il~~ 235 (241)
-.+++|+|.+|+|||||++.+....... -. .++|+....+...+...++..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~~~~~~~~r~~~~ 86 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTA--MGKKVGLAMLEESVEETAEDLIGL 86 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHT--SCCCEEEEESSSCHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcCCHHHHHHHHHHH
Confidence 4689999999999999999998763322 22 455666223445555554443
No 162
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.57 E-value=0.0026 Score=53.55 Aligned_cols=26 Identities=31% Similarity=0.291 Sum_probs=22.9
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
....+|+|+|.+|+||||++..+...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999998764
No 163
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.57 E-value=0.00079 Score=53.67 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=16.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHH
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAY 204 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~ 204 (241)
-.+|+|+|+.|+|||||++.+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CCEEEEECSCC----CHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999998
No 164
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.57 E-value=0.0018 Score=57.03 Aligned_cols=47 Identities=26% Similarity=0.309 Sum_probs=37.3
Q ss_pred CCcccchHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV-----------GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~-----------~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++.|.+..++.|.+.+.- +-...+-|-++|++|+|||+||+.|.+.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3588999999988876421 2244677889999999999999999885
No 165
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.57 E-value=0.0013 Score=50.32 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 4679999999999999999998875
No 166
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.56 E-value=0.0016 Score=51.16 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.-.+|.|+|+.|+||||+++.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999998774
No 167
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.56 E-value=0.0012 Score=53.99 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|+.|+|||||++.+.-
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 168
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.55 E-value=0.00097 Score=52.64 Aligned_cols=23 Identities=30% Similarity=0.176 Sum_probs=20.7
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|+|..|+|||||++.+.--
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999864
No 169
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.55 E-value=0.0014 Score=50.79 Aligned_cols=24 Identities=13% Similarity=0.016 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+|.|.|+.|+||||+++.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999885
No 170
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.55 E-value=0.0012 Score=53.09 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999874
No 171
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.54 E-value=0.0015 Score=50.82 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.-.+|+|+|+.|+||||+++.+-+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999999999999998774
No 172
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.53 E-value=0.0013 Score=53.28 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999983
No 173
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.53 E-value=0.0013 Score=52.25 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+|.|+|+.|+||||+++.+.+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999764
No 174
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.53 E-value=0.0013 Score=54.58 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.....+-++|++|+|||+||+.|.+.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567889999999999999999986
No 175
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.53 E-value=0.0012 Score=53.22 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+.--
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999873
No 176
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.53 E-value=0.0024 Score=56.16 Aligned_cols=45 Identities=20% Similarity=0.199 Sum_probs=30.6
Q ss_pred Ccc-cchHH--HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 161 NIM-GLEDE--IEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 161 ~~v-G~~~~--~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++ |.... ...+..+...... ...+.|+|++|+||||||+.+.+.
T Consensus 106 ~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 106 NFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp GCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHH
Confidence 344 64332 3334444433322 778999999999999999999986
No 177
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.52 E-value=0.0012 Score=53.76 Aligned_cols=24 Identities=17% Similarity=0.142 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+.--
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 178
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.52 E-value=0.0013 Score=54.17 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|+.|+|||||++.+.-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 35899999999999999999986
No 179
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.50 E-value=0.0013 Score=52.62 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 180
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.50 E-value=0.0015 Score=53.64 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+.--
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999999984
No 181
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.50 E-value=0.0013 Score=53.83 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+.--
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 468999999999999999999873
No 182
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.50 E-value=0.0014 Score=52.83 Aligned_cols=24 Identities=25% Similarity=0.127 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999863
No 183
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.48 E-value=0.0014 Score=53.66 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|..|+|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999986
No 184
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.48 E-value=0.0018 Score=55.47 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+|+|+|..|+|||||++.+...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4679999999999999999999875
No 185
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.48 E-value=0.0014 Score=55.31 Aligned_cols=45 Identities=22% Similarity=0.133 Sum_probs=32.8
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|.+..+..+...+.... ..-+-++|.+|+|||+||+.+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHh
Confidence 358999886665544443322 233889999999999999999985
No 186
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.47 E-value=0.0016 Score=51.40 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...|.|+|+.|+||||+++.+.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999764
No 187
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.47 E-value=0.0019 Score=51.33 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=23.8
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+.+||-|.|++|+||||.|+.+.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999999875
No 188
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.47 E-value=0.0012 Score=52.44 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.9
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|+|..|+|||||++.+..-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999873
No 189
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.46 E-value=0.0014 Score=53.07 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999773
No 190
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.45 E-value=0.0032 Score=55.37 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=36.4
Q ss_pred CCcccchHHHHHHHHHHhc------------CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV------------GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~------------~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|.+..++.|...+.. .+...+-|-++|++|+||||||+.+.+.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 4589999988888776632 1123456889999999999999999885
No 191
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.45 E-value=0.0018 Score=49.89 Aligned_cols=26 Identities=35% Similarity=0.579 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
....|+|+|..|+|||||++.+....
T Consensus 28 ~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 28 YLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 35789999999999999999998753
No 192
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.45 E-value=0.0015 Score=53.29 Aligned_cols=24 Identities=21% Similarity=0.101 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+.--
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999873
No 193
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.43 E-value=0.0015 Score=54.47 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+|+++|.+|+||||++..+...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998865
No 194
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.42 E-value=0.0015 Score=53.32 Aligned_cols=24 Identities=29% Similarity=0.322 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 458999999999999999999864
No 195
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.42 E-value=0.0015 Score=53.68 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 458999999999999999999873
No 196
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.41 E-value=0.0015 Score=51.70 Aligned_cols=24 Identities=17% Similarity=0.046 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...|.|.|+.|+||||+++.+.+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999875
No 197
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.40 E-value=0.0016 Score=52.79 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=21.0
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|+|..|+|||||++.+.--
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999874
No 198
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.40 E-value=0.0016 Score=53.74 Aligned_cols=24 Identities=17% Similarity=-0.045 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 358999999999999999999873
No 199
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.39 E-value=0.002 Score=52.61 Aligned_cols=24 Identities=13% Similarity=0.283 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHh
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.-.+++|+|+.|+|||||++.+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 457999999999999999999876
No 200
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.39 E-value=0.0016 Score=53.29 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+.--
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999999873
No 201
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.38 E-value=0.002 Score=50.05 Aligned_cols=21 Identities=33% Similarity=0.317 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHh
Q 042580 185 IVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~ 205 (241)
+|+|.|+.|+||||+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999866
No 202
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.38 E-value=0.0023 Score=53.57 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+|+|+|.+|+||||++..+...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH
Confidence 4689999999999999999999875
No 203
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.37 E-value=0.0017 Score=52.78 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999874
No 204
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.34 E-value=0.0019 Score=52.98 Aligned_cols=22 Identities=23% Similarity=0.569 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++|+|..|+|||||++.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999973
No 205
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.34 E-value=0.002 Score=49.80 Aligned_cols=24 Identities=38% Similarity=0.641 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...|+|+|..|+|||||++.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999875
No 206
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.34 E-value=0.0027 Score=47.44 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...|+|+|.+|+|||||.+.+...
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999874
No 207
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.33 E-value=0.0048 Score=55.12 Aligned_cols=48 Identities=25% Similarity=0.316 Sum_probs=34.7
Q ss_pred cCCcccchHHHHHHHHHHhc--CC--------CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 159 KRNIMGLEDEIEELLDLLIV--GE--------PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 159 ~~~~vG~~~~~~~l~~~L~~--~~--------~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|.+..+.++.+++.. .. .-.+-+.|+|++|+||||||+.|.+.
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34689998887777765421 10 11223899999999999999999874
No 208
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.33 E-value=0.0015 Score=52.06 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.-.+|+|.|..|+|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999998875
No 209
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.32 E-value=0.0042 Score=56.09 Aligned_cols=47 Identities=26% Similarity=0.319 Sum_probs=36.0
Q ss_pred CCcccchHHHHHHHHHHh----cCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLI----VGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~----~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|.++.++.+.+.+. .......++.++|++|+||||||+.+...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~ 131 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKS 131 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 347898888877766542 12234668999999999999999999875
No 210
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.30 E-value=0.0018 Score=52.59 Aligned_cols=24 Identities=21% Similarity=0.064 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+|+|+|+.|+||||+++.+...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 347999999999999999999763
No 211
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.29 E-value=0.003 Score=48.01 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=22.9
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
....-|.|+|.+|+|||||.+.+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45678899999999999999999875
No 212
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.29 E-value=0.004 Score=54.60 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcC-------CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 168 EIEELLDLLIVG-------EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 168 ~~~~l~~~L~~~-------~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.++|.++|... ....++|.|+|.+|+||||++-++...
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 355566666432 135789999999999999999988754
No 213
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.27 E-value=0.0027 Score=46.72 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhcc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
-|.++|.+|+|||||++.+..+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998753
No 214
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.27 E-value=0.0032 Score=47.84 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...|+|+|.+|+|||||++.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999874
No 215
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.27 E-value=0.0048 Score=49.23 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhccc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNNY 208 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~~ 208 (241)
.-.+|.|.|+.|+||||+++.+.+.-.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 457899999999999999999998643
No 216
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.26 E-value=0.0049 Score=53.07 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 170 EELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 170 ~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+++-+.-+-..-.+|+|+|+.|+|||||++.+...
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3444444323344679999999999999999999863
No 217
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.26 E-value=0.0031 Score=46.42 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=21.0
Q ss_pred EEEEEEcCCCccHHHHHHHHHhcc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.-|.|+|.+|+|||||++.+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998753
No 218
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.26 E-value=0.0028 Score=51.17 Aligned_cols=26 Identities=35% Similarity=0.434 Sum_probs=22.6
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
....++.+.|.||+|||||+..+...
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 45788899999999999999999754
No 219
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.26 E-value=0.0026 Score=53.95 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=21.2
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+|+|+|+.|+||||||+.+...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999998875
No 220
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.24 E-value=0.0021 Score=49.00 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999873
No 221
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.0043 Score=54.17 Aligned_cols=47 Identities=30% Similarity=0.341 Sum_probs=36.9
Q ss_pred CCcccchHHHHHHHHHHhc-----------CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIV-----------GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~-----------~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+++.|.++.+++|.+.+.- +-...+=|-++|++|+|||.||+.|.+.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH
Confidence 3477899988888776521 1244677889999999999999999985
No 222
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.24 E-value=0.0026 Score=47.17 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.--|.|+|.+|+|||||++.+.+..
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568899999999999999998753
No 223
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.0056 Score=46.73 Aligned_cols=27 Identities=15% Similarity=0.068 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.....|.|+|.+|+|||||++.+.+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345688999999999999999998754
No 224
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.23 E-value=0.0027 Score=50.98 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+|+|.|+.|+||||+++.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999753
No 225
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.23 E-value=0.0023 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=20.8
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|+|..|+|||||++.+..-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999864
No 226
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.22 E-value=0.0022 Score=50.57 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=20.5
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..|.|.|+.|+||||+++.+.+.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999764
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.19 E-value=0.0043 Score=54.37 Aligned_cols=25 Identities=36% Similarity=0.401 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+|.++|.+|+||||++..+...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999998764
No 228
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.18 E-value=0.012 Score=48.86 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+|+++|.+|+||||++..+...
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999998864
No 229
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.18 E-value=0.0022 Score=53.70 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|..|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 46899999999999999999976
No 230
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.17 E-value=0.0034 Score=46.37 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..-|.|+|.+|+|||||++.+.+..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3568899999999999999998754
No 231
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.17 E-value=0.0027 Score=53.04 Aligned_cols=25 Identities=12% Similarity=0.113 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.-.+++|+|+.|+|||||++.+..-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 4578999999999999999998753
No 232
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.17 E-value=0.0032 Score=54.89 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.9
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHh
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
....+++|+|..|+|||||.+.+..
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhC
Confidence 3467999999999999999999988
No 233
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.17 E-value=0.0031 Score=52.12 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.9
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+|.|+|++|+||||+++.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999999863
No 234
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.17 E-value=0.0034 Score=46.42 Aligned_cols=24 Identities=13% Similarity=0.346 Sum_probs=20.8
Q ss_pred EEEEEEcCCCccHHHHHHHHHhcc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
--|+|+|.+|+|||||.+.+.+..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358899999999999999998753
No 235
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.17 E-value=0.0038 Score=46.36 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.--|.|+|.+|+|||||++.+.++.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568999999999999999998753
No 236
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.17 E-value=0.0029 Score=49.77 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|.+|+|||||++.+...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 237
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.16 E-value=0.005 Score=51.47 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCC-CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 168 EIEELLDLLIVGEP-SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 168 ~~~~l~~~L~~~~~-~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
....+.+++..-.. ....+-++|..|+|||+||+.+.+..
T Consensus 136 ~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 136 AFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34455566654221 24678899999999999999999863
No 238
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.15 E-value=0.003 Score=47.21 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.--|+|+|.+|+|||||++.+.+..
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 4568999999999999999998754
No 239
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.15 E-value=0.0084 Score=51.02 Aligned_cols=54 Identities=15% Similarity=0.167 Sum_probs=34.9
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhccccccCC----CeeEEEe--CCCCHHHHHHHHHHH
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYF----DCRAWVG--CEYYLHKVLDSIIKS 235 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F----~~~~wV~--~~~~~~~il~~Il~~ 235 (241)
..-.++.|+|..|+|||||++.+.-........ ..++|++ ..+....| ..+++.
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~ 188 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQN 188 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHH
Confidence 346899999999999999999998752111111 2458888 44444443 334443
No 240
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.15 E-value=0.0027 Score=53.31 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
++.+++|+|+.|+|||||++.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4789999999999999999999965
No 241
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.14 E-value=0.0035 Score=50.16 Aligned_cols=25 Identities=20% Similarity=0.157 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...|.|.|..|+||||+++.+.+.-
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998754
No 242
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.14 E-value=0.0055 Score=56.01 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=35.9
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|.+..++.+...+..+ ..+.|+|..|+||||||+.+..-
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhcc
Confidence 35889988887777777554 48899999999999999999885
No 243
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.13 E-value=0.0052 Score=57.68 Aligned_cols=47 Identities=13% Similarity=0.258 Sum_probs=37.6
Q ss_pred CCcccchHHHHHHHHHHhcC-------CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVG-------EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~-------~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|.+..++.+...+... ......+-++|++|+|||+||+.+.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~ 544 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES 544 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999998888887531 122347899999999999999999875
No 244
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.13 E-value=0.003 Score=48.10 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=21.0
Q ss_pred EEEEEEcCCCccHHHHHHHHHhcc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
--|.|+|.+|+|||||++.+..+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468899999999999999998754
No 245
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.12 E-value=0.012 Score=50.97 Aligned_cols=54 Identities=9% Similarity=0.017 Sum_probs=34.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcccc----ccCCCeeEEEe--CCCCHHHHHHHHHHHh
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNNYA----KNYFDCRAWVG--CEYYLHKVLDSIIKSV 236 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~~v----~~~F~~~~wV~--~~~~~~~il~~Il~~l 236 (241)
.-.++.|+|.+|+|||||+..+.-.... ...-..++|++ ..++...+. .+++++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~ 236 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRF 236 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHc
Confidence 3579999999999999999977532111 11234578888 446655443 344444
No 246
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.12 E-value=0.0048 Score=46.23 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+...|.|+|.+|+|||||++.+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4677899999999999999999764
No 247
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.12 E-value=0.0033 Score=50.20 Aligned_cols=25 Identities=20% Similarity=0.113 Sum_probs=22.3
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHh
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999999876
No 248
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.11 E-value=0.0031 Score=48.05 Aligned_cols=24 Identities=21% Similarity=0.106 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.--|.|+|.+|+|||||++.+.+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHhh
Confidence 456889999999999999988763
No 249
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.11 E-value=0.0027 Score=52.69 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 468999999999999999999874
No 250
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.08 E-value=0.0091 Score=48.65 Aligned_cols=39 Identities=18% Similarity=0.299 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 169 IEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 169 ~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
+.+++..+.........|.++|..|+|||||.+.+....
T Consensus 25 l~~~~~~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 25 LLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHHhhcCCCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 334444444444456788999999999999999998754
No 251
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.08 E-value=0.0031 Score=53.87 Aligned_cols=23 Identities=30% Similarity=0.244 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|+.|+|||||.+.|.-
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 45899999999999999999987
No 252
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.08 E-value=0.0041 Score=45.86 Aligned_cols=24 Identities=17% Similarity=0.411 Sum_probs=20.7
Q ss_pred EEEEEEcCCCccHHHHHHHHHhcc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
--|+|+|..|+|||||++.+.+..
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 458999999999999999987653
No 253
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.07 E-value=0.0036 Score=46.47 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.4
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
--|.|+|.+|+|||||++.+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999999874
No 254
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.07 E-value=0.0016 Score=54.03 Aligned_cols=25 Identities=16% Similarity=0.174 Sum_probs=19.1
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+..+|+|.|..|+||||+++.+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998774
No 255
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.07 E-value=0.0045 Score=58.34 Aligned_cols=47 Identities=19% Similarity=0.245 Sum_probs=36.4
Q ss_pred CCcccchHHHHHHHHHHh----c-------CCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLI----V-------GEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~----~-------~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++.|.++.+++|.+++. . +-...+-|-++|++|+|||+||+.|.+.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 457888888888777652 1 1134567889999999999999999986
No 256
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.06 E-value=0.007 Score=51.25 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=25.9
Q ss_pred HHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHh
Q 042580 172 LLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 172 l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
+++-+.-.-..-.+++|+|..|+|||||.+.+..
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4444432234578999999999999999999974
No 257
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.05 E-value=0.0037 Score=49.84 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...|.|.|+.|+||||+++.+.+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999764
No 258
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.05 E-value=0.0034 Score=53.73 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|+.|+|||||++.+.--
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcC
Confidence 468999999999999999999873
No 259
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.04 E-value=0.0036 Score=47.26 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.8
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999875
No 260
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.04 E-value=0.0037 Score=46.35 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhcc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
-|.|+|..|+|||||++.+.++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988754
No 261
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.04 E-value=0.0037 Score=46.36 Aligned_cols=25 Identities=16% Similarity=0.343 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.--|.|+|..|+|||||++.+.+..
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468899999999999999998754
No 262
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.03 E-value=0.014 Score=48.81 Aligned_cols=53 Identities=19% Similarity=0.141 Sum_probs=38.3
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEeCCCCHHHHHHHHHHH
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVGCEYYLHKVLDSIIKS 235 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~~~~~~~~il~~Il~~ 235 (241)
..-.++-|.|.+|+|||||+..+..+...++ ..++|++-.-+..++...++..
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEMGKKENIKRLIVT 118 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSSCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCCCHHHHHHHHHHH
Confidence 3457899999999999999999887643333 5678888335566666666554
No 263
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.03 E-value=0.0084 Score=50.78 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHh
Q 042580 171 ELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 171 ~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.++.-+.-...+..+|+|+|.+|+|||||++.+..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~ 78 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGM 78 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHH
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34443332234588999999999999999999864
No 264
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.02 E-value=0.0043 Score=46.85 Aligned_cols=26 Identities=15% Similarity=0.414 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..--|.|+|.+|+|||||++.+.++.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45678999999999999999998753
No 265
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.02 E-value=0.0044 Score=46.89 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.--|.|+|..|+|||||++.+.++.
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCC
Confidence 3458899999999999999998754
No 266
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.01 E-value=0.0043 Score=47.16 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..--|.|+|.+|+|||||++.+.++.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCC
Confidence 35568899999999999999998753
No 267
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.01 E-value=0.0035 Score=54.95 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+|+|+|.+|+||||++..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999988774
No 268
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.01 E-value=0.0043 Score=51.54 Aligned_cols=25 Identities=24% Similarity=0.100 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+|+|+|.+|+||||++..+...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999999875
No 269
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.00 E-value=0.0037 Score=53.40 Aligned_cols=23 Identities=26% Similarity=0.206 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|+.|+|||||.+.|.-
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 46899999999999999999986
No 270
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.00 E-value=0.0042 Score=52.27 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+|.|+|+.|+|||||++.+...
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 271
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.99 E-value=0.0064 Score=54.31 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=21.0
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHh
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
....+|+|+|.+|+||||++.++..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999999884
No 272
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.99 E-value=0.011 Score=47.95 Aligned_cols=39 Identities=15% Similarity=0.267 Sum_probs=28.7
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 169 IEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 169 ~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
+.++...+.....+...|+|+|..|+|||||+..+....
T Consensus 22 l~~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 22 LIEFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp HHHHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred HHHHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 334444444443456789999999999999999998754
No 273
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.98 E-value=0.016 Score=48.46 Aligned_cols=54 Identities=11% Similarity=0.136 Sum_probs=37.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcccccc---------CC-----CeeEEEe--CCCCHHHHHHHHHHHh
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNNYAKN---------YF-----DCRAWVG--CEYYLHKVLDSIIKSV 236 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~~v~~---------~F-----~~~~wV~--~~~~~~~il~~Il~~l 236 (241)
.-.++-|+|.+|+||||||..+.-+..... .. ..++|++ ..|+...+.. +++.+
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~ 166 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHA 166 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHc
Confidence 457999999999999999999886522211 11 3678888 6677776653 34444
No 274
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.97 E-value=0.0037 Score=54.50 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=23.1
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999998764
No 275
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.97 E-value=0.0051 Score=52.06 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+..+|.|+|+.|+|||||+..+...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3569999999999999999999885
No 276
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.96 E-value=0.0041 Score=46.22 Aligned_cols=23 Identities=39% Similarity=0.613 Sum_probs=19.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
+--|.|+|.+|+|||||++.+..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEEECCCCCCHHHHHHHHHh
Confidence 34589999999999999999864
No 277
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.96 E-value=0.0043 Score=46.51 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.--|.|+|.+|+|||||.+.+.+..
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568999999999999999998643
No 278
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.95 E-value=0.0033 Score=46.60 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-|.|+|.+|+|||||.+.+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998653
No 279
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=95.95 E-value=0.0041 Score=53.28 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|+.|+|||||.+.|.-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 46899999999999999999986
No 280
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.95 E-value=0.0049 Score=46.11 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...-|.|+|..|+|||||++.+.+..
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 45678999999999999999998754
No 281
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=95.94 E-value=0.004 Score=53.23 Aligned_cols=23 Identities=30% Similarity=0.151 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|+.|+|||||.+.|.-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHC
Confidence 45899999999999999999987
No 282
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.94 E-value=0.0052 Score=51.52 Aligned_cols=24 Identities=29% Similarity=0.219 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..+|.|+|+.|+|||||+..+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 468999999999999999999764
No 283
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.94 E-value=0.007 Score=45.35 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...-|.|+|..|+|||||++.+.+..
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCc
Confidence 45679999999999999999998753
No 284
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.93 E-value=0.0042 Score=53.53 Aligned_cols=23 Identities=26% Similarity=0.216 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|+.|+|||||++.|.-
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHHc
Confidence 45899999999999999999987
No 285
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.93 E-value=0.0049 Score=46.46 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...-|.|+|..|+|||||++.+.++.
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCC
Confidence 35678999999999999999998643
No 286
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=95.93 E-value=0.0046 Score=47.05 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=19.9
Q ss_pred EEEEEEcCCCccHHHHHHHHHh
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.+.+|+|..|+|||||+..|+-
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999999964
No 287
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.93 E-value=0.0044 Score=45.98 Aligned_cols=25 Identities=16% Similarity=0.391 Sum_probs=21.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.--|.|+|..|+|||||.+.+.++.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998653
No 288
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.92 E-value=0.005 Score=46.17 Aligned_cols=25 Identities=12% Similarity=0.216 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.--|.|+|.+|+|||||++.+.++.
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCc
Confidence 4568899999999999999987653
No 289
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=95.92 E-value=0.0047 Score=51.31 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=22.0
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...++|+|+|-||+||||+|-.+-.-
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~ 64 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA 64 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH
Confidence 45799999999999999999887664
No 290
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.91 E-value=0.0037 Score=53.26 Aligned_cols=24 Identities=25% Similarity=0.110 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|+.|+|||||.+.|.--
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCccHHHHHHHHHcC
Confidence 358999999999999999999873
No 291
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.91 E-value=0.0052 Score=46.33 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..-|.|+|..|+|||||++.+.++.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC
Confidence 5668899999999999999998754
No 292
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.91 E-value=0.0046 Score=45.80 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=20.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.--|.|+|..|+|||||++.+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 356889999999999999999864
No 293
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.90 E-value=0.0043 Score=53.33 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|+.|+|||||.+.|.-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCcHHHHHHHHHHc
Confidence 35899999999999999999986
No 294
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.90 E-value=0.0063 Score=45.65 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...-|.|+|..|+|||||++.+.++.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 46678999999999999999987754
No 295
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.89 E-value=0.0038 Score=46.85 Aligned_cols=27 Identities=30% Similarity=0.469 Sum_probs=22.7
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...--|.|+|..|+|||||++.+.++.
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678999999999999999997653
No 296
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=95.89 E-value=0.0044 Score=53.22 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|+.|+|||||.+.|.-
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 46899999999999999999986
No 297
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.89 E-value=0.0047 Score=47.15 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..--|.|+|.+|+|||||++.+.+.
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3567899999999999999877664
No 298
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.89 E-value=0.011 Score=44.93 Aligned_cols=35 Identities=23% Similarity=0.130 Sum_probs=26.4
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 169 IEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 169 ~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+.+ +.. .+..-|.|+|..|+|||||.+.+.+.
T Consensus 5 ~~~~~~-~~~--~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 5 FTRIWR-LFN--HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp HHHHHH-HHT--TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred HHHHHH-hcC--CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 344555 333 34678899999999999999999854
No 299
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.89 E-value=0.012 Score=55.07 Aligned_cols=47 Identities=17% Similarity=0.249 Sum_probs=37.0
Q ss_pred CCcccchHHHHHHHHHHhcC-------CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVG-------EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~-------~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..++|.+..++.+...+... ......+-++|++|+|||+||+.+.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 45889999888888776431 123457899999999999999999874
No 300
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.88 E-value=0.0055 Score=46.82 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..--|.|+|.+|+|||||++.+.++.
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCC
Confidence 35668899999999999998887653
No 301
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.88 E-value=0.0084 Score=52.62 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+|.++|.+|+||||++.++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999999888764
No 302
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.88 E-value=0.0034 Score=52.29 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=19.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+.| +|+|..|+|||||++.++..
T Consensus 19 ~~I-~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTL-MVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEE-EEEEETTSSHHHHHHHHHC-
T ss_pred EEE-EEECCCCCCHHHHHHHHhCC
Confidence 444 99999999999999998763
No 303
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.88 E-value=0.0043 Score=45.85 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=19.1
Q ss_pred EEEEcCCCccHHHHHHHHHhc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~ 206 (241)
|.|+|.+|+|||||++.+.++
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999764
No 304
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.88 E-value=0.01 Score=51.75 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.-.+|+|+|+.|+|||||++.+...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhh
Confidence 4679999999999999999998773
No 305
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.88 E-value=0.012 Score=46.67 Aligned_cols=47 Identities=21% Similarity=0.160 Sum_probs=30.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEeCCCCHHHHHHH
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVGCEYYLHKVLDS 231 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~~~~~~~~il~~ 231 (241)
-.++.|+|.+|+|||||+.++..... ..=..++|++......++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~~~~~~~~~ 69 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEEHPVQVRQN 69 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSSCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccCCHHHHHHH
Confidence 46899999999999999887765422 111356777722234444433
No 306
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.87 E-value=0.0055 Score=46.19 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.--|.|+|.+|+|||||++.+.++.
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC
Confidence 3468999999999999999987653
No 307
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.86 E-value=0.0049 Score=47.06 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...-|.|+|..|+|||||++.+.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46778999999999999999998754
No 308
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.86 E-value=0.0048 Score=46.69 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..--|.|+|..|+|||||++.+.++.
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCC
Confidence 35678999999999999999998654
No 309
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.85 E-value=0.0047 Score=50.63 Aligned_cols=24 Identities=21% Similarity=0.104 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.++.|+|.+|+|||||+..+...
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998864
No 310
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.85 E-value=0.016 Score=48.60 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=36.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhccccccC----CCeeEEEe--CCCCHHHHHHHHHHHh
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNNYAKNY----FDCRAWVG--CEYYLHKVLDSIIKSV 236 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~----F~~~~wV~--~~~~~~~il~~Il~~l 236 (241)
.-.++.|+|.+|+|||||+..+..+...... =..++|++ ..|+...+.. +++.+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~ 165 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKAL 165 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHh
Confidence 3568999999999999999998875221110 23678888 5577766553 34444
No 311
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.85 E-value=0.0055 Score=52.14 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.6
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHh
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
....+|+|+|.+|+|||||.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3478999999999999999999986
No 312
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.83 E-value=0.0032 Score=51.14 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=22.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+...|.|.|..|+||||+++.+.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999999999999998875
No 313
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.83 E-value=0.0051 Score=52.56 Aligned_cols=24 Identities=21% Similarity=0.165 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-..++|+|..|+|||||++.+..-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999998763
No 314
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.83 E-value=0.0046 Score=47.03 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
....|.|+|..|+|||||++.+.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34578899999999999999998864
No 315
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.82 E-value=0.0049 Score=47.43 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=21.1
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...-|.|+|.+|+|||||++.+.+.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc
Confidence 3556899999999999999988774
No 316
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.82 E-value=0.0051 Score=47.01 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..--|+|+|..|+|||||++.+.+..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 45678999999999999999988753
No 317
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.82 E-value=0.0057 Score=47.74 Aligned_cols=27 Identities=15% Similarity=0.068 Sum_probs=23.1
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.....|.|+|.+|+|||||++.+.+..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 346678999999999999999998754
No 318
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.81 E-value=0.0059 Score=46.99 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...-|.|+|..|+|||||++.+..+.
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 45678999999999999999997654
No 319
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.81 E-value=0.0033 Score=53.70 Aligned_cols=23 Identities=30% Similarity=0.208 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|+.|+|||||.+.|.-
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 45899999999999999999986
No 320
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.81 E-value=0.0051 Score=47.17 Aligned_cols=24 Identities=17% Similarity=0.041 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..-|+|+|.+|+|||||++.+.++
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999874
No 321
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.81 E-value=0.0054 Score=46.10 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..-|.|+|.+|+|||||++.+..+.
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4568899999999999999998753
No 322
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.79 E-value=0.0053 Score=45.94 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.4
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
--|.|+|..|+|||||++.+.++
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56889999999999999999864
No 323
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.79 E-value=0.0053 Score=46.55 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..--|.|+|..|+|||||++.+.+..
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCC
Confidence 35678899999999999999998743
No 324
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.79 E-value=0.0028 Score=49.18 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.-..|+|+|..|+|||||.+.+....
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999999999999999987643
No 325
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.79 E-value=0.014 Score=49.89 Aligned_cols=38 Identities=26% Similarity=0.271 Sum_probs=27.7
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG 220 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~ 220 (241)
..-.++.|+|.+|+|||||+..+.......+ ..++|++
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId 96 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFID 96 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEe
Confidence 3457999999999999999999987532111 2355666
No 326
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.77 E-value=0.0055 Score=46.92 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..--|+|+|..|+|||||++.+.++.
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCC
Confidence 35678999999999999999998754
No 327
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.77 E-value=0.0069 Score=50.66 Aligned_cols=26 Identities=19% Similarity=0.079 Sum_probs=22.8
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
....+|.|+|+.|+||||||..+...
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHh
Confidence 34679999999999999999999874
No 328
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.77 E-value=0.0056 Score=46.07 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.--|.|+|.+|+|||||++.+.++.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 3458899999999999999998653
No 329
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.76 E-value=0.0057 Score=46.96 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.--|.|+|.+|+|||||++.+.++.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4568899999999999999998753
No 330
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.76 E-value=0.0057 Score=52.55 Aligned_cols=24 Identities=13% Similarity=0.283 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHh
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.-.+|+|+|..|+|||||++.+..
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 357899999999999999999876
No 331
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.75 E-value=0.0079 Score=44.64 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..-|.|+|..|+|||||++.+.++
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999764
No 332
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.74 E-value=0.0058 Score=46.65 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.--|+|+|..|+|||||++.+....
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4568899999999999999998763
No 333
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.74 E-value=0.0073 Score=46.06 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..--|.|+|..|+|||||++.+.++.
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 45678999999999999999998754
No 334
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.74 E-value=0.006 Score=50.75 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
+...|+|+|.+|+|||||.+.+....
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 46789999999999999999998753
No 335
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.74 E-value=0.0066 Score=47.21 Aligned_cols=26 Identities=23% Similarity=0.056 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
....|.|+|.+|+|||||++.+.++.
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35678999999999999999998754
No 336
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.73 E-value=0.0038 Score=48.27 Aligned_cols=24 Identities=13% Similarity=0.045 Sum_probs=20.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..-|+|+|.+|+|||||++.+.++
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 345789999999999999999763
No 337
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.73 E-value=0.0045 Score=46.51 Aligned_cols=24 Identities=8% Similarity=0.205 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.--|.|+|.+|+|||||++.+.++
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998875
No 338
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.71 E-value=0.0061 Score=45.77 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..--|.|+|..|+|||||++.+.+..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 34568999999999999999988654
No 339
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.69 E-value=0.006 Score=51.94 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
=.+++|+|..|+|||||++.+.+..
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999999963
No 340
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.68 E-value=0.007 Score=46.66 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...-|.|+|.+|+|||||++.+.+..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 46678999999999999999998754
No 341
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.67 E-value=0.0066 Score=51.83 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
-.+|+|+|+.|+|||||++.+..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45999999999999999998865
No 342
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.67 E-value=0.007 Score=47.13 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...-|.|+|.+|+|||||++.+.++.
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 45678899999999999999998753
No 343
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.67 E-value=0.0064 Score=45.81 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...-|.|+|..|+|||||.+.+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4677889999999999999998753
No 344
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.67 E-value=0.0064 Score=46.84 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..-|.|+|.+|+|||||++.+.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568999999999999999998754
No 345
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.67 E-value=0.0064 Score=46.37 Aligned_cols=25 Identities=20% Similarity=0.170 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.--|.|+|..|+|||||++.+.+..
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568899999999999999998643
No 346
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.66 E-value=0.0086 Score=46.12 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...-|.|+|.+|+|||||++.+.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 46678999999999999999987754
No 347
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.66 E-value=0.0085 Score=46.44 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.--|.|+|..|+|||||++.+.++.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCC
Confidence 5567899999999999999888754
No 348
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.66 E-value=0.006 Score=52.74 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|+.|+|||||++.|.-
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 46899999999999999999986
No 349
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.65 E-value=0.011 Score=46.57 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 169 IEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 169 ~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...|..++.. -++.+-|-|+|++|+||||+|..+.+.
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 5555565543 333456999999999999998888764
No 350
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.64 E-value=0.0066 Score=46.24 Aligned_cols=25 Identities=28% Similarity=0.479 Sum_probs=22.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..-|.|+|..|+|||||++.+.++.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 5678999999999999999998754
No 351
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.64 E-value=0.0048 Score=47.59 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=20.6
Q ss_pred CeEEEEEEcCCCccHHHHHHHHH
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAY 204 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~ 204 (241)
...-|.|+|.+|+|||||++.+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999999984
No 352
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.64 E-value=0.0076 Score=46.08 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..--|.|+|.+|+|||||++.+.+..
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 45678899999999999999998764
No 353
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.62 E-value=0.0051 Score=52.58 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+++|+|..|+|||||++.+..-
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 358999999999999999999873
No 354
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.62 E-value=0.043 Score=46.42 Aligned_cols=50 Identities=12% Similarity=0.052 Sum_probs=35.7
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhcccccc----CCCeeEEEe--CCCCHHHHHH
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNNNYAKN----YFDCRAWVG--CEYYLHKVLD 230 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~----~F~~~~wV~--~~~~~~~il~ 230 (241)
..-.++.|+|.+|+|||||+..+..+..... .=..++|++ ..|+...+..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~ 175 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD 175 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH
Confidence 4467999999999999999999887532211 124678888 6677766543
No 355
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.62 E-value=0.006 Score=46.62 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.--|.|+|..|+|||||++.+.++.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 4568899999999999999998754
No 356
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.61 E-value=0.0066 Score=47.15 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=21.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...-|+|+|..|+|||||++.+.+.
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4567899999999999999998764
No 357
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.60 E-value=0.007 Score=46.24 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.--|.|+|..|+|||||++.+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998754
No 358
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.60 E-value=0.0072 Score=46.03 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...-|.|+|..|+|||||++.+.++.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCC
Confidence 35678999999999999999997643
No 359
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.60 E-value=0.0064 Score=46.08 Aligned_cols=26 Identities=12% Similarity=0.126 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...-|.|+|.+|+|||||++.+.++.
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 46778999999999999999998654
No 360
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.59 E-value=0.0065 Score=46.92 Aligned_cols=26 Identities=23% Similarity=0.396 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..--|.|+|..|+|||||++.+.++.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC--
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 45678899999999999999987643
No 361
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.59 E-value=0.0071 Score=46.03 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.--|.|+|..|+|||||++.+.+..
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568899999999999999998753
No 362
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.59 E-value=0.0067 Score=46.64 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=20.6
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..--|.|+|.+|+|||||++.+.+..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 35568899999999999999988653
No 363
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.58 E-value=0.0072 Score=46.21 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=21.6
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...-|.|+|.+|+|||||++.+.+.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3456899999999999999999874
No 364
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.56 E-value=0.0073 Score=46.49 Aligned_cols=26 Identities=15% Similarity=0.395 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...-|.|+|..|+|||||++.+.++.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 46788999999999999999997653
No 365
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.54 E-value=0.0089 Score=48.74 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...|+++|.+|+|||||.+.+....
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678999999999999999998753
No 366
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.53 E-value=0.0062 Score=53.20 Aligned_cols=24 Identities=25% Similarity=0.546 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..-++|+|..|+|||||++.++.-
T Consensus 42 i~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 42 CFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEEEECSTTSSSHHHHHHHHTS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCc
Confidence 334999999999999999999874
No 367
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.52 E-value=0.009 Score=45.62 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=21.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..-|.|+|..|+|||||++.+.++.
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999998753
No 368
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.52 E-value=0.0094 Score=47.05 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=23.2
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
....-|.|+|.+|+|||||++.+.+..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 346789999999999999999998753
No 369
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.52 E-value=0.027 Score=44.38 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=22.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
-..|.|.|+.|+||||+++.+.+.-
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998863
No 370
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.50 E-value=0.0074 Score=47.17 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..--|.|+|.+|+|||||++.+.++
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3567889999999999999999864
No 371
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.48 E-value=0.008 Score=46.62 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..-|.|+|..|+|||||++.+.++.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 4568999999999999999998753
No 372
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.48 E-value=0.0096 Score=47.52 Aligned_cols=25 Identities=16% Similarity=0.017 Sum_probs=19.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
-..|.|.|+.|+||||+++.+.+.-
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999863
No 373
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.48 E-value=0.021 Score=45.81 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=32.9
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe--CCCCHHHHHHHHH
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG--CEYYLHKVLDSII 233 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~--~~~~~~~il~~Il 233 (241)
-.+|.|.|+.|+||||+++.+.+.-. ...+...+... ....+-+.++.++
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~-~~~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQ-QNGIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHH-HTTCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-hcCCCeeeeecCCCCCHHHHHHHHHH
Confidence 46899999999999999999988632 23455444444 2223344455554
No 374
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.47 E-value=0.011 Score=47.14 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=23.0
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...-|+|+|..|+|||||++.+....
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCC
Confidence 46789999999999999999998754
No 375
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.47 E-value=0.008 Score=46.44 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...-|.|+|.+|+|||||++.+.+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCC
Confidence 35678999999999999999998643
No 376
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.47 E-value=0.0065 Score=46.63 Aligned_cols=25 Identities=16% Similarity=0.072 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+.--|.|+|.+|+|||||++.+.++
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC
Confidence 3556999999999999999999654
No 377
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.46 E-value=0.0092 Score=45.58 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
....-|.|+|..|+|||||++.+.+..
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 357789999999999999999988754
No 378
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.46 E-value=0.021 Score=45.00 Aligned_cols=50 Identities=16% Similarity=0.022 Sum_probs=33.6
Q ss_pred EEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe--CCCCHHHHHHHHHH
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG--CEYYLHKVLDSIIK 234 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~--~~~~~~~il~~Il~ 234 (241)
..|.+.|..|+||||+++.+.+.-.. ..+..++... ....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH-cCCCcceeeeCCCCCHHHHHHHHHHh
Confidence 47899999999999999999986332 2343333333 33345566677665
No 379
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.46 E-value=0.0092 Score=50.20 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=21.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-+++-|+|++|+||||||.++...
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 456789999999999999999875
No 380
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.45 E-value=0.0085 Score=49.24 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=19.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.++|+|.|-||+||||+|-.+-.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~ 24 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVA 24 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHH
Confidence 47899999999999999887764
No 381
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.45 E-value=0.0066 Score=46.53 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.--|.|+|..|+|||||++.+.++.
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998654
No 382
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.43 E-value=0.0073 Score=45.70 Aligned_cols=24 Identities=29% Similarity=0.119 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..-|.|+|..|+|||||.+.+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999864
No 383
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.42 E-value=0.0074 Score=47.30 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=19.9
Q ss_pred EEEEEEcCCCccHHHHHHHHHh
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.+|+|+|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998866
No 384
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.41 E-value=0.0087 Score=51.09 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=21.4
Q ss_pred EEEEEEcCCCccHHHHHHHHHhcc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.+++|+|..|+|||||++.+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 478999999999999999998743
No 385
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.41 E-value=0.011 Score=49.38 Aligned_cols=27 Identities=22% Similarity=0.285 Sum_probs=24.0
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.....|+|+|.+|+|||||.+.+....
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 457899999999999999999998754
No 386
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.41 E-value=0.014 Score=55.44 Aligned_cols=46 Identities=17% Similarity=0.301 Sum_probs=36.7
Q ss_pred CcccchHHHHHHHHHHhcC-------CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 161 NIMGLEDEIEELLDLLIVG-------EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 161 ~~vG~~~~~~~l~~~L~~~-------~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.++|.+..+..+...+... +.....+-++|..|+|||+||+.+.+.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999888888877431 122468899999999999999999874
No 387
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.41 E-value=0.0087 Score=46.01 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.--|.|+|.+|||||||.+.+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 45689999999999999998864
No 388
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.40 E-value=0.0089 Score=46.22 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...-|.|+|.+|+|||||++.+.++.
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCC
Confidence 46779999999999999999997653
No 389
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.40 E-value=0.0067 Score=53.62 Aligned_cols=24 Identities=29% Similarity=0.180 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||+|.+..-
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 468999999999999999999884
No 390
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.40 E-value=0.01 Score=46.43 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.--|.|+|.+|+|||||++.+.++.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4567899999999999999987753
No 391
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.40 E-value=0.0084 Score=49.94 Aligned_cols=31 Identities=35% Similarity=0.523 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHH
Q 042580 169 IEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAY 204 (241)
Q Consensus 169 ~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~ 204 (241)
+++|.+.+. -.+++++|..|+|||||++.+.
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH
Confidence 556666553 2478999999999999999998
No 392
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.39 E-value=0.009 Score=46.25 Aligned_cols=25 Identities=16% Similarity=0.391 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..-|+|+|.+|+|||||+..+....
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 5678999999999999999998653
No 393
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.39 E-value=0.01 Score=45.78 Aligned_cols=25 Identities=20% Similarity=0.115 Sum_probs=21.7
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..-|+|+|..|+|||||++.+.++.
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4568899999999999999998753
No 394
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.38 E-value=0.0076 Score=54.48 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+-.+|+|+|+.|+|||||++.+...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 3478999999999999999999875
No 395
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.37 E-value=0.0086 Score=54.00 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=21.4
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|+|..|+|||||++.++--
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl 335 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGV 335 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999984
No 396
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.37 E-value=0.011 Score=44.88 Aligned_cols=35 Identities=17% Similarity=-0.006 Sum_probs=25.2
Q ss_pred HHHHHhcCC-CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 172 LLDLLIVGE-PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 172 l~~~L~~~~-~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+.++|.--. .+.--|.|+|.+|+|||||++.+.++
T Consensus 10 ~~~~l~~f~~~~~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 10 LKQTLGLLPADRKIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp HHHHHHTSCTTSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred HHHHhhhccCCCceEEEEECCCCCCHHHHHHHHHcC
Confidence 455442222 34566999999999999999998653
No 397
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.36 E-value=0.01 Score=45.97 Aligned_cols=26 Identities=19% Similarity=0.156 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..--|.|+|.+|+|||||++.+.++.
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999988653
No 398
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.36 E-value=0.0093 Score=46.46 Aligned_cols=25 Identities=32% Similarity=0.410 Sum_probs=21.9
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..--|.|+|..|+|||||++.+.+.
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eeEEEEEECcCCCCHHHHHHHHhcC
Confidence 4567899999999999999999875
No 399
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.35 E-value=0.0066 Score=46.26 Aligned_cols=25 Identities=20% Similarity=0.113 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.--|.|+|..|+|||||.+.+.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 4568899999999999999998764
No 400
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.34 E-value=0.0099 Score=51.94 Aligned_cols=25 Identities=24% Similarity=0.100 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+|+|+|.+|+||||++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999875
No 401
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.34 E-value=0.0063 Score=51.39 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=21.1
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|+|..|+|||||++.+..-
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 402
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.33 E-value=0.01 Score=51.46 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=20.6
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+|.|+|+.|+|||||+..+...
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 58999999999999999998763
No 403
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.31 E-value=0.0055 Score=46.28 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=11.0
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...-|.|+|..|+|||||++.+.++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3567899999999999999998764
No 404
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.29 E-value=0.0085 Score=54.02 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=21.2
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|+|..|+|||||++.++--
T Consensus 295 ei~~i~G~nGsGKSTLl~~l~Gl 317 (538)
T 3ozx_A 295 EIIGILGPNGIGKTTFARILVGE 317 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999974
No 405
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.27 E-value=0.0097 Score=53.65 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|..|+|||||++.+.-
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~G 69 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAG 69 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999986
No 406
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.23 E-value=0.02 Score=51.22 Aligned_cols=45 Identities=4% Similarity=-0.011 Sum_probs=30.4
Q ss_pred ccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 163 MGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 163 vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..+.+..+.|.+..-....+..+|.+.|+.|+||||+++.+...-
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L 419 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTF 419 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHH
Confidence 334444444444331112346899999999999999999998863
No 407
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.23 E-value=0.01 Score=52.65 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=20.9
Q ss_pred EEEEEEcCCCccHHHHHHHHHh
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.+++|+|+.|+|||||++.+.-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 8999999999999999999986
No 408
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.23 E-value=0.014 Score=48.60 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
+...|+|+|.+|+|||||++.+....
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45779999999999999999998753
No 409
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.23 E-value=0.01 Score=52.08 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=22.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
=.+++|+|..|+|||||++.|.+..
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 4689999999999999999998853
No 410
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.21 E-value=0.01 Score=53.55 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.=.+++|+|+.|+|||||+|.+..-
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3479999999999999999999873
No 411
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.20 E-value=0.026 Score=49.44 Aligned_cols=44 Identities=23% Similarity=0.308 Sum_probs=33.0
Q ss_pred cchHHHHHHHHHHhcC---------CCCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 164 GLEDEIEELLDLLIVG---------EPSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 164 G~~~~~~~l~~~L~~~---------~~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
|.++-++.|.+.+... +....-|+|+|.+|+|||||.+.+....
T Consensus 152 gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 152 NLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp SHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 5566777777766421 1235689999999999999999998753
No 412
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.18 E-value=0.0094 Score=52.02 Aligned_cols=21 Identities=24% Similarity=0.547 Sum_probs=19.3
Q ss_pred EEEEcCCCccHHHHHHHHHhc
Q 042580 186 VAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 186 I~IvG~gGvGKTTLak~v~~~ 206 (241)
|+|+|..|+|||||++.++..
T Consensus 34 I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHhCC
Confidence 499999999999999999874
No 413
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.17 E-value=0.027 Score=49.62 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=25.8
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 169 IEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 169 ~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+...+..++ +.+.|.|.+|+||||++..+...
T Consensus 34 v~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 34 FNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp HHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHHH
Confidence 344444444433 38899999999999999998875
No 414
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.14 E-value=0.011 Score=49.10 Aligned_cols=33 Identities=30% Similarity=0.345 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 169 IEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 169 ~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
++++..++.. .+++|+|+.|+|||||.+.+...
T Consensus 160 v~~lf~~l~g-----eiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 160 IEELKEYLKG-----KISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp HHHHHHHHSS-----SEEEEECSTTSSHHHHHHHHSTT
T ss_pred HHHHHHHhcC-----CeEEEECCCCCcHHHHHHHhccc
Confidence 4556666532 47899999999999999999864
No 415
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.13 E-value=0.011 Score=54.01 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=21.3
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|+|..|+|||||++.+.--
T Consensus 383 ei~~i~G~NGsGKSTLlk~l~Gl 405 (607)
T 3bk7_A 383 EVIGIVGPNGIGKTTFVKMLAGV 405 (607)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999984
No 416
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.12 E-value=0.024 Score=46.26 Aligned_cols=37 Identities=16% Similarity=0.044 Sum_probs=28.1
Q ss_pred HHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 170 EELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 170 ~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.-+..||.....+..-|-++|++|.|||+||..|.+.
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3456666554244567999999999999999999874
No 417
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.12 E-value=0.0097 Score=48.63 Aligned_cols=24 Identities=25% Similarity=0.528 Sum_probs=20.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.--|+|+|.+|+|||||...++..
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEEECCCCCCHHHHHHHHhCC
Confidence 345889999999999999998763
No 418
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.10 E-value=0.016 Score=46.77 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...-|+|+|.+|+|||||...+....
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999997653
No 419
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.09 E-value=0.014 Score=52.31 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+|.++|+.|+||||+|+.+...
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999654
No 420
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.09 E-value=0.017 Score=46.03 Aligned_cols=53 Identities=9% Similarity=-0.007 Sum_probs=33.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe--CCCCHHHHHHHHHH
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG--CEYYLHKVLDSIIK 234 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~--~~~~~~~il~~Il~ 234 (241)
.-.+|.|.|+.|+||||+++.+.+.-.....+++..... .....-+.+++++.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHh
Confidence 467899999999999999999998633212344333122 22233444555554
No 421
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.08 E-value=0.011 Score=49.10 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=23.8
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..+..|+|+|..|+|||||...+....
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCC
Confidence 457889999999999999999997754
No 422
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=95.06 E-value=0.014 Score=45.63 Aligned_cols=25 Identities=8% Similarity=0.077 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...||+|+||.|+||+|.|+.+-+.
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~ 34 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSR 34 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHH
Confidence 3579999999999999999998763
No 423
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.06 E-value=0.0059 Score=51.05 Aligned_cols=23 Identities=17% Similarity=0.258 Sum_probs=20.3
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|+|..|+|||||++.+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 48999999999999999999763
No 424
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.06 E-value=0.017 Score=49.05 Aligned_cols=37 Identities=22% Similarity=0.113 Sum_probs=26.7
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG 220 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~ 220 (241)
.-.++.|+|.+|+|||||+..+..... ..=..++|++
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~ 96 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFID 96 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEE
Confidence 457899999999999999999876422 1112456666
No 425
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.05 E-value=0.012 Score=53.78 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=21.1
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+++|+|..|+|||||++.+.--
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl 401 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGA 401 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhcC
Confidence 57999999999999999999873
No 426
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.04 E-value=0.013 Score=46.06 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=20.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHh
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
...-|.|+|.+|||||||++.+..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 356699999999999999999874
No 427
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.04 E-value=0.017 Score=42.80 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=20.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
..+..|+|..|+|||||...|+-
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999999999863
No 428
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.03 E-value=0.0084 Score=46.89 Aligned_cols=26 Identities=19% Similarity=0.118 Sum_probs=22.9
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
....|+|+|..|+|||||++.+....
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45678999999999999999998864
No 429
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.02 E-value=0.014 Score=45.87 Aligned_cols=26 Identities=31% Similarity=0.579 Sum_probs=22.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
..--|.|+|..|+|||||++.+.+..
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 35678999999999999999988753
No 430
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.98 E-value=0.014 Score=46.65 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-++|.|++|+||||+++.+.+.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHH
Confidence 4799999999999999998764
No 431
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.97 E-value=0.013 Score=53.54 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|+.|+|||||++.+.--
T Consensus 103 Gei~~LvGpNGaGKSTLLkiL~Gl 126 (608)
T 3j16_B 103 GQVLGLVGTNGIGKSTALKILAGK 126 (608)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 459999999999999999999863
No 432
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.95 E-value=0.064 Score=45.02 Aligned_cols=42 Identities=12% Similarity=-0.036 Sum_probs=29.0
Q ss_pred EEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe--CCCCH
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG--CEYYL 225 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~--~~~~~ 225 (241)
.++-|+|.+|+|||||+-++.....-...=..++||+ ..++.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH
Confidence 4789999999999999887766522110123578888 55554
No 433
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.93 E-value=0.016 Score=45.99 Aligned_cols=25 Identities=12% Similarity=0.031 Sum_probs=20.9
Q ss_pred CeEEEEEEcC-CCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGN-SGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~-gGvGKTTLak~v~~~ 206 (241)
..++|+|++. ||+||||++-.+-..
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~ 28 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFA 28 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHH
Confidence 4689999965 899999999888664
No 434
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.93 E-value=0.011 Score=50.56 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=25.6
Q ss_pred CCcccchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 160 RNIMGLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 160 ~~~vG~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+|+..--..........+. .--|+|+|..|+|||||++.++..
T Consensus 15 ~~~v~~~~l~~~~~~k~~~~~~-~~~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 15 PGYVGFANLPNQVHRKSVKKGF-EFTLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ------CCHHHHHHTHHHHHCC-EECEEECCCTTSCHHHHHHHHTTC
T ss_pred CceEEeccchHHhCCeeecCCC-CEEEEEEcCCCCCHHHHHHHHhCC
Confidence 3456655443333332221121 344699999999999999998764
No 435
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.91 E-value=0.018 Score=47.22 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...|+++|.+|+|||||.+.+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999874
No 436
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.90 E-value=0.018 Score=45.07 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.1
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.-|+|-|..|+||||+++.+.+.
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~ 25 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHR 25 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHH
Confidence 46889999999999999888874
No 437
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.89 E-value=0.0083 Score=56.73 Aligned_cols=48 Identities=31% Similarity=0.246 Sum_probs=37.2
Q ss_pred cCCcccchHHHHHHHHHHhcC-----------CCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 159 KRNIMGLEDEIEELLDLLIVG-----------EPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 159 ~~~~vG~~~~~~~l~~~L~~~-----------~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.++.|.+..++.|.+.+.-. -.....+.++|++|+||||||+.+.+.
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 346789999888888876421 123456889999999999999999985
No 438
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.88 E-value=0.015 Score=46.73 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=21.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.--|+++|.+|+|||||+..+....
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 5568999999999999999998754
No 439
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.87 E-value=0.019 Score=46.58 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+...|+++|.+|+|||||.+.+...
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCC
Confidence 3467899999999999999999874
No 440
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.87 E-value=0.017 Score=51.02 Aligned_cols=25 Identities=16% Similarity=0.151 Sum_probs=22.0
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+|.++|+.|+||||+++.+...
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999765
No 441
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.85 E-value=0.014 Score=49.97 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=22.1
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.+.+|+|+|.+|+|||||.+.+....
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 46779999999999999999998754
No 442
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.84 E-value=0.022 Score=48.57 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=29.1
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe--CCCC
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG--CEYY 224 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~--~~~~ 224 (241)
.-.++-|+|.+|+||||||..+.......+ ..++|++ ..++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~ 104 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALD 104 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcc
Confidence 356899999999999999998876532111 2466777 4444
No 443
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.83 E-value=0.019 Score=44.87 Aligned_cols=24 Identities=33% Similarity=0.290 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-..|.|+|..|+||||||..+...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 366889999999999999999775
No 444
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.81 E-value=0.054 Score=47.61 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=35.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEeCCCCHHHHHHHHH
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVGCEYYLHKVLDSII 233 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~~~~~~~~il~~Il 233 (241)
.-.++.|.|.+|+|||||+..+..+...... ..++|++-..+...+...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g-~~Vl~~s~E~s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTN-ENVAIFSLEMSAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSS-CCEEEEESSSCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECCCCHHHHHHHHH
Confidence 3568999999999999999999887433211 25677773334456665554
No 445
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=94.80 E-value=0.011 Score=53.99 Aligned_cols=45 Identities=24% Similarity=0.229 Sum_probs=30.1
Q ss_pred cccchHHHHHHHHHHhcCCCC---------eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 162 IMGLEDEIEELLDLLIVGEPS---------LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 162 ~vG~~~~~~~l~~~L~~~~~~---------~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
++|.+..+..+.-.|..+... -.-+-++|.+|+|||+||+.+.+.
T Consensus 297 I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 297 IYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp TSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred hcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 567776555554444333100 014789999999999999999874
No 446
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.80 E-value=0.018 Score=45.49 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-|.|+|-+|||||+|++...++
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4779999999999999987654
No 447
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=94.79 E-value=0.015 Score=52.89 Aligned_cols=23 Identities=35% Similarity=0.277 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|..|+|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g 391 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTR 391 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 448
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=94.79 E-value=0.015 Score=52.94 Aligned_cols=23 Identities=35% Similarity=0.299 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|..|+|||||++.+..
T Consensus 369 G~~~~ivG~sGsGKSTLl~~l~g 391 (582)
T 3b60_A 369 GKTVALVGRSGSGKSTIASLITR 391 (582)
T ss_dssp TCEEEEEECTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhh
Confidence 46899999999999999999986
No 449
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=94.78 E-value=0.016 Score=46.95 Aligned_cols=28 Identities=18% Similarity=-0.030 Sum_probs=22.0
Q ss_pred CCeEEEEEEcC-CCccHHHHHHHHHhccc
Q 042580 181 PSLFIVAIVGN-SGFDKTNFAGEAYNNNY 208 (241)
Q Consensus 181 ~~~~vI~IvG~-gGvGKTTLak~v~~~~~ 208 (241)
...++|+|++. ||+||||+|-.+-.--.
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la 53 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS 53 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH
Confidence 45789999855 89999999988876533
No 450
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.77 E-value=0.015 Score=53.15 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.5
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+.--
T Consensus 117 Ge~~~LiG~NGsGKSTLlkiL~Gl 140 (607)
T 3bk7_A 117 GMVVGIVGPNGTGKTTAVKILAGQ 140 (607)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 368999999999999999999863
No 451
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.68 E-value=0.0068 Score=46.63 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=5.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.--|.|+|..|+|||||++.+..+
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999988776
No 452
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.68 E-value=0.039 Score=45.17 Aligned_cols=39 Identities=18% Similarity=0.273 Sum_probs=28.7
Q ss_pred HHHHHHHHhc----CCCCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 169 IEELLDLLIV----GEPSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 169 ~~~l~~~L~~----~~~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.++|.+.|.. ......-|+|+|.+|+|||||...+....
T Consensus 8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 3455555543 12346789999999999999999998754
No 453
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.64 E-value=0.021 Score=44.54 Aligned_cols=23 Identities=22% Similarity=0.134 Sum_probs=21.0
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.+|+|.|+.|+||||+++.+-+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~ 29 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEH 29 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHH
Confidence 58999999999999999998774
No 454
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.60 E-value=0.015 Score=52.08 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHhc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+|+|+|..|+|||||++.+..-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999873
No 455
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.57 E-value=0.095 Score=45.87 Aligned_cols=54 Identities=17% Similarity=-0.015 Sum_probs=36.9
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEeCCCCHHHHHHHHHHH
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVGCEYYLHKVLDSIIKS 235 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~~~~~~~~il~~Il~~ 235 (241)
..-.++-|.|.+|+|||||+..+..+...... ..++|++-.-+...+...++..
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g-~~vl~~slE~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEG-VGVGIYSLEMPAAQLTLRMMCS 251 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-CCEEEEESSSCHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CeEEEEECCCCHHHHHHHHHHH
Confidence 34568999999999999999998886432211 2567777334455666665543
No 456
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.55 E-value=0.038 Score=46.02 Aligned_cols=70 Identities=14% Similarity=0.044 Sum_probs=42.6
Q ss_pred cchHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhccc-cc-cCCCeeEEEe-C--CCCHHHHHHHHHHHhC
Q 042580 164 GLEDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNY-AK-NYFDCRAWVG-C--EYYLHKVLDSIIKSVM 237 (241)
Q Consensus 164 G~~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~-v~-~~F~~~~wV~-~--~~~~~~il~~Il~~l~ 237 (241)
|.+...+.|...+..+. ....-++|+.|+||||+|+.+.+... .. .|.+. .++. . ...+.+ .+++++.+.
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~-~~l~~~~~~~~id~-ir~li~~~~ 75 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDV-LEIDPEGENIGIDD-IRTIKDFLN 75 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTE-EEECCSSSCBCHHH-HHHHHHHHT
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCE-EEEcCCcCCCCHHH-HHHHHHHHh
Confidence 34455666777776554 77888999999999999999976411 11 23343 4555 3 344433 355666553
No 457
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=94.48 E-value=0.023 Score=45.49 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=18.9
Q ss_pred eEEEEEEcC-CCccHHHHHHHHHh
Q 042580 183 LFIVAIVGN-SGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~-gGvGKTTLak~v~~ 205 (241)
.++|+|++. ||+||||+|-.+-.
T Consensus 2 ~~vi~v~s~kgGvGKTt~a~~LA~ 25 (260)
T 3q9l_A 2 ARIIVVTSGKGGVGKTTSSAAIAT 25 (260)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCcHHHHHHHHHH
Confidence 368999865 89999999987765
No 458
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.48 E-value=0.024 Score=51.98 Aligned_cols=25 Identities=24% Similarity=0.086 Sum_probs=22.5
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+..+|.++|+.|+||||+|+.+...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~ 75 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEY 75 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999775
No 459
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.47 E-value=0.024 Score=44.88 Aligned_cols=25 Identities=20% Similarity=0.097 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
-..|.+-|+.|+||||+++.+.+.-
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999864
No 460
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=94.47 E-value=0.022 Score=48.42 Aligned_cols=27 Identities=15% Similarity=0.193 Sum_probs=23.3
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.....|+|+|.+|+|||||.+.+....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999998753
No 461
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.47 E-value=0.022 Score=43.71 Aligned_cols=20 Identities=20% Similarity=-0.067 Sum_probs=16.8
Q ss_pred EEEEEEcCCCccHHHHHHHH
Q 042580 184 FIVAIVGNSGFDKTNFAGEA 203 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v 203 (241)
.++.|+|+.|+||||++-.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~ 23 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSF 23 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 47789999999999998443
No 462
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.44 E-value=0.026 Score=51.30 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+..+|.|.|+.|+||||+|+.+.+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~ 419 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVT 419 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999775
No 463
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.43 E-value=0.022 Score=47.38 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.5
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.-|+++|.+|+|||||.+.++++
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999998775
No 464
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=94.43 E-value=0.0084 Score=46.75 Aligned_cols=25 Identities=16% Similarity=0.522 Sum_probs=21.2
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
..--|+|+|..|+|||||++.+.+.
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3556889999999999999998853
No 465
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.42 E-value=0.047 Score=43.23 Aligned_cols=50 Identities=22% Similarity=0.247 Sum_probs=31.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEeCCCCHHHHHHHH
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVGCEYYLHKVLDSI 232 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~~~~~~~~il~~I 232 (241)
.-.++-|.|.+|+||||||.++.-+. ..+.-..+++++-..+...+...+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~-~~~~~~~v~~~s~E~~~~~~~~~~ 78 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKG-AEEYGEPGVFVTLEERARDLRREM 78 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HHHHCCCEEEEESSSCHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH-HHhcCCCceeecccCCHHHHHHHH
Confidence 34688899999999999998865432 112223455666334455555544
No 466
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=94.42 E-value=0.028 Score=48.06 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=21.9
Q ss_pred CCeEEEEEEc-CCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVG-NSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG-~gGvGKTTLak~v~~~ 206 (241)
...++|+|+| -||+||||+|-.+-..
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~ 167 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIA 167 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHH
Confidence 5689999996 7999999998877653
No 467
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.41 E-value=0.023 Score=49.15 Aligned_cols=25 Identities=20% Similarity=0.255 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.-..++|+|.+|+|||||.+.+...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~ 43 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKS 43 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3468999999999999999999884
No 468
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=94.40 E-value=0.015 Score=53.04 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
=.+++|+|..|+|||||++.+..-
T Consensus 370 G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 370 GSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp TCEEEEECCTTSSSTHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999873
No 469
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.39 E-value=0.11 Score=43.97 Aligned_cols=52 Identities=12% Similarity=0.012 Sum_probs=37.0
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEeCCCCHHHHHHHHHHH
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVGCEYYLHKVLDSIIKS 235 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~~~~~~~~il~~Il~~ 235 (241)
.-.++.|.|.+|+||||||..+..+....+ ..++|++-.-+...+...++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g--~~Vl~fSlEms~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDD--RGVAVFSLEMSAEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT--CEEEEEESSSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCCCHHHHHHHHHHH
Confidence 356889999999999999999987643322 3567777445566776666554
No 470
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.38 E-value=0.024 Score=46.40 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...|+++|.+|+|||||.+.+....
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568999999999999999998743
No 471
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.38 E-value=0.05 Score=47.56 Aligned_cols=44 Identities=11% Similarity=0.284 Sum_probs=32.6
Q ss_pred cchHHHHHHHHHHhcC-----CCCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 164 GLEDEIEELLDLLIVG-----EPSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 164 G~~~~~~~l~~~L~~~-----~~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
|.++-++.|.+.+... +....-|+|+|.+|+|||||.+.+....
T Consensus 151 gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 151 GLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp THHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred ChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4566666666666421 2346789999999999999999998754
No 472
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.40 E-value=0.0073 Score=46.64 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.0
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+.--|.|+|.+|+|||||++.+.++
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 3566899999999999999887754
No 473
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.36 E-value=0.024 Score=51.65 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
=.+++|+|..|+|||||++.+..
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g 391 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPR 391 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999877
No 474
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.34 E-value=0.043 Score=48.46 Aligned_cols=63 Identities=24% Similarity=0.212 Sum_probs=42.6
Q ss_pred HHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe---CCCCHHHHHHHHHHH
Q 042580 171 ELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG---CEYYLHKVLDSIIKS 235 (241)
Q Consensus 171 ~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~---~~~~~~~il~~Il~~ 235 (241)
++++.|..= .+=.-++|+|.+|+|||||++.+-++. .+.+-++++++- +.-.+.++++++...
T Consensus 142 r~ID~l~pi-gkGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPY-AKGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCE-ETTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEeccccc-ccCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 455655431 124568999999999999999998862 123345566655 666778888877654
No 475
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.33 E-value=0.025 Score=45.03 Aligned_cols=23 Identities=22% Similarity=0.112 Sum_probs=18.8
Q ss_pred EEEEEEcCCCccHHHHHHHHHhc
Q 042580 184 FIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 184 ~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.|-+.|.||+||||+|-.+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHH
Confidence 34778899999999998777765
No 476
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.33 E-value=0.052 Score=49.00 Aligned_cols=25 Identities=20% Similarity=0.057 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
...+|.++|+.|+||||+++.+...
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~ 395 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATM 395 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999775
No 477
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.30 E-value=0.017 Score=52.73 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=21.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHh
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.-.+++|+|..|+|||||++.+..
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g 403 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMR 403 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhc
Confidence 356899999999999999999987
No 478
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.29 E-value=0.049 Score=48.27 Aligned_cols=62 Identities=21% Similarity=0.118 Sum_probs=42.7
Q ss_pred HHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe---CCCCHHHHHHHHHHH
Q 042580 172 LLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG---CEYYLHKVLDSIIKS 235 (241)
Q Consensus 172 l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~---~~~~~~~il~~Il~~ 235 (241)
+++.|..= .+=.-++|.|.+|+|||+|++.+-++. .+.|-++++++- +.-.+.++.+++...
T Consensus 155 vID~l~pi-gkGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 155 VVNLLAPY-RRGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp THHHHSCC-CTTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred Eeeeeccc-ccCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 45555431 124568999999999999999998862 123446666666 666778888887653
No 479
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=94.29 E-value=0.048 Score=46.94 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=21.8
Q ss_pred CCCeEEEEEE-cCCCccHHHHHHHHHhc
Q 042580 180 EPSLFIVAIV-GNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 180 ~~~~~vI~Iv-G~gGvGKTTLak~v~~~ 206 (241)
....++|+|+ |-||+||||++-.+-.-
T Consensus 105 ~~~~~vIav~s~KGGvGKTT~a~nLA~~ 132 (398)
T 3ez2_A 105 YSEAYVIFISNLKGGVSKTVSTVSLAHA 132 (398)
T ss_dssp CCSCEEEEECCSSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCccHHHHHHHHHHH
Confidence 4568999999 66999999988877653
No 480
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=94.21 E-value=0.047 Score=45.22 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=22.5
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
...--|.|+|.+|+|||||++.+.++.
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~ 179 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNA 179 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCC
Confidence 345678899999999999999887654
No 481
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.18 E-value=0.026 Score=50.66 Aligned_cols=21 Identities=29% Similarity=0.177 Sum_probs=19.4
Q ss_pred eEEEEEEcCCCccHHHHHHHH
Q 042580 183 LFIVAIVGNSGFDKTNFAGEA 203 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v 203 (241)
=.+++|+|..|+|||||++.+
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 568999999999999999995
No 482
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.17 E-value=0.014 Score=52.98 Aligned_cols=24 Identities=29% Similarity=0.140 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHh
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.-.+++|+|+.|+|||||++.+..
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g 389 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPR 389 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 356899999999999999999876
No 483
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.16 E-value=0.018 Score=44.96 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=18.9
Q ss_pred CeEEEEEEcCCCccHHHHHHHH
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEA 203 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v 203 (241)
..--|.|+|.+|+|||||++.+
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~ 35 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRH 35 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTB
T ss_pred cceEEEEECCCCCCHHHHHHHH
Confidence 3456889999999999999983
No 484
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=94.08 E-value=0.05 Score=49.52 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=26.6
Q ss_pred HHhcCCCCeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 175 LLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 175 ~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.|..-+....+|+|+|.+|+||+||...+....
T Consensus 30 ~L~~i~~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 30 ILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp HHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred HHHhccCCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 333334568999999999999999999998754
No 485
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.08 E-value=0.065 Score=45.02 Aligned_cols=40 Identities=13% Similarity=0.143 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHhcCCCCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 166 EDEIEELLDLLIVGEPSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 166 ~~~~~~l~~~L~~~~~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
+.....|...+..+. -.+.+-++|+.|+||||+|+.+.+.
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHH
Confidence 445666666665542 3567889999999999999988764
No 486
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.06 E-value=0.066 Score=44.01 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=22.4
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhcc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
....|+++|.+|+|||||.+.+....
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 34578999999999999999998754
No 487
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=94.04 E-value=0.034 Score=43.92 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=19.3
Q ss_pred eEEEEEEcC-CCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGN-SGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~-gGvGKTTLak~v~~~ 206 (241)
.++|+|++. ||+||||++-.+-..
T Consensus 2 ~~~i~v~s~kgGvGKTt~a~~LA~~ 26 (237)
T 1g3q_A 2 GRIISIVSGKGGTGKTTVTANLSVA 26 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHH
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHH
Confidence 368898865 899999998887763
No 488
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.03 E-value=0.036 Score=47.33 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
.++.+|+|..|+|||||...|+-
T Consensus 26 ~g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 26 EGVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHH
Confidence 45999999999999999999994
No 489
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.00 E-value=0.043 Score=46.93 Aligned_cols=37 Identities=19% Similarity=0.029 Sum_probs=26.8
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG 220 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~ 220 (241)
.-.++-|+|.+|+||||||..+..+.. ..=..++|++
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~ 109 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFID 109 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEE
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEE
Confidence 346888899999999999988876532 1113567777
No 490
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=93.96 E-value=0.04 Score=42.95 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=20.1
Q ss_pred eEEEEEEcCCCccHHHHHHHHH
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAY 204 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~ 204 (241)
..+..|+|..|+||||+...|+
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHH
Confidence 4788999999999999999886
No 491
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=93.91 E-value=0.033 Score=50.93 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=23.0
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+..|+|+|..|+|||||++.+.--
T Consensus 43 l~lp~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 43 LALPAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCCCCEECCCCTTSCHHHHHHHHHSC
T ss_pred ccCCeEEEECCCCChHHHHHHHHhCC
Confidence 45677999999999999999999874
No 492
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.82 E-value=0.0056 Score=48.92 Aligned_cols=21 Identities=14% Similarity=0.283 Sum_probs=18.6
Q ss_pred EEEEEcCCCccHHHHHHHHHh
Q 042580 185 IVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~ 205 (241)
+++|+|+.|+|||||++.|.-
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g 49 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVT 49 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 457899999999999999876
No 493
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.82 E-value=0.048 Score=48.14 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=32.3
Q ss_pred EEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEe---CCCCHHHHHHHHH
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVG---CEYYLHKVLDSII 233 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~---~~~~~~~il~~Il 233 (241)
.++|+|..|+|||||++.+..+.... +-++++++- ++-...++..++.
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhh
Confidence 58899999999999999998873322 223445544 5455566665543
No 494
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.81 E-value=0.12 Score=45.43 Aligned_cols=52 Identities=19% Similarity=0.134 Sum_probs=34.7
Q ss_pred CCeEEEEEEcCCCccHHHHHHHHHhccccccCCCeeEEEeCCCCHHHHHHHHHH
Q 042580 181 PSLFIVAIVGNSGFDKTNFAGEAYNNNYAKNYFDCRAWVGCEYYLHKVLDSIIK 234 (241)
Q Consensus 181 ~~~~vI~IvG~gGvGKTTLak~v~~~~~v~~~F~~~~wV~~~~~~~~il~~Il~ 234 (241)
..-.++-|.|.+|+||||||-++..+...++ ..++|++-.-+..++...++.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlEms~~ql~~R~~~ 246 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEMGKKENIKRLIV 246 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSSSCTTHHHHHHHH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECCCCHHHHHHHHHH
Confidence 3457899999999999999999988743332 256777722233344444443
No 495
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=93.79 E-value=0.036 Score=44.78 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=19.8
Q ss_pred CeEEEEEEc-CCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVG-NSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG-~gGvGKTTLak~v~~~ 206 (241)
..++|+|++ -||+||||+|-.+-.-
T Consensus 17 ~~~vI~v~s~kGGvGKTT~a~nLA~~ 42 (262)
T 2ph1_A 17 IKSRIAVMSGKGGVGKSTVTALLAVH 42 (262)
T ss_dssp CSCEEEEECSSSCTTHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHH
Confidence 357899885 5899999998887653
No 496
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.79 E-value=0.033 Score=53.55 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCccHHHHHHHHHh
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYN 205 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~ 205 (241)
-.+++|+|..|+|||||++.+..
T Consensus 461 Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 461 ARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999999984
No 497
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.77 E-value=0.035 Score=49.78 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=22.3
Q ss_pred CeEEEEEEcCCCccHHHHHHHHHhc
Q 042580 182 SLFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 182 ~~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
.=.+++|+|..|+|||||++.+...
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999875
No 498
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=93.76 E-value=0.036 Score=47.37 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHhcc
Q 042580 185 IVAIVGNSGFDKTNFAGEAYNNN 207 (241)
Q Consensus 185 vI~IvG~gGvGKTTLak~v~~~~ 207 (241)
.|+|+|.+|+|||||.+.+.+..
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~~ 26 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKAG 26 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999998743
No 499
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=93.76 E-value=0.033 Score=45.68 Aligned_cols=24 Identities=13% Similarity=0.158 Sum_probs=20.1
Q ss_pred eEEEEEEc-CCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVG-NSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG-~gGvGKTTLak~v~~~ 206 (241)
.++|+|++ -||+||||++-.+-.-
T Consensus 4 ~kvI~v~s~KGGvGKTT~a~nLA~~ 28 (286)
T 2xj4_A 4 TRVIVVGNEKGGAGKSTIAVHLVTA 28 (286)
T ss_dssp CEEEEECCSSSCTTHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCCHHHHHHHHHHH
Confidence 46899985 5899999999998764
No 500
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.73 E-value=0.042 Score=43.62 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCccHHHHHHHHHhc
Q 042580 183 LFIVAIVGNSGFDKTNFAGEAYNN 206 (241)
Q Consensus 183 ~~vI~IvG~gGvGKTTLak~v~~~ 206 (241)
-.+|+|.|+.|+||||+++.+-+.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~ 37 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEE 37 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHH
Confidence 469999999999999999998763
Done!