Query 042581
Match_columns 459
No_of_seqs 192 out of 1858
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 07:34:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042581.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042581hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1304 Amino acid transporter 100.0 2.1E-58 4.6E-63 438.1 32.4 387 53-446 40-449 (449)
2 PTZ00206 amino acid transporte 100.0 4.8E-55 1E-59 436.3 34.2 389 57-447 57-465 (467)
3 KOG1303 Amino acid transporter 100.0 2.8E-51 6.1E-56 397.1 31.9 393 53-448 31-436 (437)
4 PLN03074 auxin influx permease 100.0 1.9E-48 4.1E-53 386.7 31.9 389 53-454 39-459 (473)
5 PF01490 Aa_trans: Transmembra 100.0 1.3E-51 2.8E-56 410.5 -2.0 382 58-443 1-408 (409)
6 KOG4303 Vesicular inhibitory a 100.0 1.8E-45 3.8E-50 329.0 13.3 392 55-455 112-523 (524)
7 KOG1305 Amino acid transporter 100.0 3.8E-43 8.2E-48 338.9 22.8 386 57-449 3-408 (411)
8 COG0814 SdaC Amino acid permea 100.0 9.1E-33 2E-37 270.8 31.7 384 55-442 4-411 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 100.0 2E-26 4.3E-31 224.6 31.0 365 58-435 1-391 (394)
10 PRK10483 tryptophan permease; 100.0 3.7E-26 8.1E-31 220.2 32.0 369 55-437 6-401 (414)
11 PRK09664 tryptophan permease T 100.0 1.3E-25 2.8E-30 216.2 31.2 367 58-437 7-402 (415)
12 PRK15132 tyrosine transporter 99.9 2.3E-25 5E-30 215.9 29.7 364 61-437 4-390 (403)
13 TIGR00837 araaP aromatic amino 99.9 6.1E-26 1.3E-30 223.3 26.0 337 66-414 3-359 (381)
14 PRK13629 threonine/serine tran 99.9 4.4E-22 9.5E-27 191.8 30.8 370 63-440 22-440 (443)
15 TIGR00814 stp serine transport 99.9 2.4E-21 5.3E-26 188.5 26.9 364 62-432 5-396 (397)
16 KOG1287 Amino acid transporter 99.8 8.6E-19 1.9E-23 169.2 22.4 352 53-420 7-392 (479)
17 PRK10655 potE putrescine trans 99.8 3E-17 6.6E-22 164.6 34.5 237 56-300 4-247 (438)
18 PRK10435 cadB lysine/cadaverin 99.8 2.6E-17 5.7E-22 164.5 33.7 239 55-301 2-246 (435)
19 COG1113 AnsP Gamma-aminobutyra 99.8 3.7E-18 8E-23 162.1 23.9 348 54-414 9-389 (462)
20 PRK11021 putative transporter; 99.8 1.4E-16 3.1E-21 158.2 34.7 226 60-297 1-232 (410)
21 PRK10644 arginine:agmatin anti 99.8 6.2E-17 1.3E-21 162.5 31.8 240 55-301 5-250 (445)
22 PRK10249 phenylalanine transpo 99.8 1.3E-16 2.9E-21 160.4 33.5 345 55-413 18-394 (458)
23 PRK15049 L-asparagine permease 99.8 1.4E-16 3E-21 161.5 31.6 348 55-414 25-406 (499)
24 TIGR03810 arg_ornith_anti argi 99.8 1.3E-16 2.8E-21 161.1 30.9 350 58-415 1-381 (468)
25 PRK10746 putative transport pr 99.8 2.3E-16 4.9E-21 158.6 32.4 348 55-414 7-388 (461)
26 TIGR00909 2A0306 amino acid tr 99.8 1.2E-16 2.5E-21 160.1 29.0 243 57-299 2-252 (429)
27 TIGR01773 GABAperm gamma-amino 99.8 3.7E-16 8E-21 157.3 32.0 237 53-300 7-259 (452)
28 TIGR00905 2A0302 transporter, 99.8 3.7E-16 8E-21 158.0 32.0 241 56-301 5-257 (473)
29 PRK11387 S-methylmethionine tr 99.8 4.1E-16 8.8E-21 157.6 31.9 237 55-302 11-266 (471)
30 PRK11049 D-alanine/D-serine/gl 99.8 5E-16 1.1E-20 156.8 31.6 234 54-298 16-267 (469)
31 TIGR00906 2A0303 cationic amin 99.8 4.2E-16 9.1E-21 159.6 30.8 355 54-414 24-411 (557)
32 TIGR00912 2A0309 spore germina 99.8 2.2E-16 4.7E-21 154.2 27.3 337 58-414 1-354 (359)
33 PRK10836 lysine transporter; P 99.8 1.5E-15 3.3E-20 154.1 34.3 237 54-301 11-264 (489)
34 TIGR00930 2a30 K-Cl cotranspor 99.8 3.3E-16 7.2E-21 167.4 30.4 244 53-297 71-335 (953)
35 PRK10238 aromatic amino acid t 99.8 1.6E-15 3.5E-20 152.4 31.5 346 55-414 9-386 (456)
36 TIGR00911 2A0308 L-type amino 99.8 1.1E-15 2.4E-20 155.8 30.6 243 53-301 37-294 (501)
37 PRK10580 proY putative proline 99.8 5.6E-15 1.2E-19 148.8 34.2 233 54-297 5-254 (457)
38 TIGR00908 2A0305 ethanolamine 99.7 3.5E-15 7.6E-20 149.9 32.0 232 54-296 3-245 (442)
39 PRK11357 frlA putative fructos 99.7 3.4E-15 7.5E-20 150.0 28.9 235 55-298 5-251 (445)
40 TIGR00913 2A0310 amino acid pe 99.7 7.6E-15 1.6E-19 149.0 31.4 229 57-296 1-251 (478)
41 COG0833 LysP Amino acid transp 99.7 8.6E-15 1.9E-19 142.3 29.7 348 55-413 41-427 (541)
42 PRK10197 gamma-aminobutyrate t 99.7 7.4E-15 1.6E-19 147.2 30.0 331 69-413 3-367 (446)
43 PF13520 AA_permease_2: Amino 99.7 1.1E-14 2.3E-19 145.9 29.3 238 60-304 1-248 (426)
44 KOG1286 Amino acid transporter 99.6 2E-14 4.3E-19 144.5 19.6 347 54-413 26-422 (554)
45 COG0531 PotE Amino acid transp 99.6 1.2E-12 2.6E-17 132.8 28.7 247 53-303 7-262 (466)
46 TIGR03428 ureacarb_perm permea 99.6 1.2E-11 2.7E-16 125.2 32.8 249 54-302 9-273 (475)
47 TIGR00907 2A0304 amino acid pe 99.6 1.7E-11 3.6E-16 124.7 33.1 247 55-302 9-277 (482)
48 PF03845 Spore_permease: Spore 99.5 1.6E-12 3.5E-17 124.7 22.9 285 59-356 1-298 (320)
49 TIGR03813 put_Glu_GABA_T putat 99.5 8.1E-11 1.8E-15 119.3 32.3 237 59-302 2-254 (474)
50 PRK15238 inner membrane transp 99.5 1.3E-10 2.8E-15 118.4 33.7 241 56-298 5-267 (496)
51 TIGR00910 2A0307_GadC glutamat 99.5 8.6E-11 1.9E-15 119.5 29.5 231 57-295 3-247 (507)
52 PF00324 AA_permease: Amino ac 99.4 2.2E-12 4.7E-17 131.0 10.8 231 68-304 5-262 (478)
53 KOG3832 Predicted amino acid t 99.1 1.4E-09 2.9E-14 92.0 13.8 215 58-273 10-303 (319)
54 KOG1289 Amino acid transporter 99.1 1.5E-07 3.3E-12 92.2 27.6 250 53-304 43-314 (550)
55 COG3949 Uncharacterized membra 99.0 5.9E-07 1.3E-11 82.5 26.0 214 64-292 7-228 (349)
56 TIGR00800 ncs1 NCS1 nucleoside 98.9 2.9E-06 6.3E-11 85.2 29.2 342 57-403 11-378 (442)
57 COG1457 CodB Purine-cytosine p 98.9 5.6E-06 1.2E-10 80.8 28.7 266 123-408 83-356 (442)
58 TIGR02358 thia_cytX probable h 98.9 8.2E-06 1.8E-10 80.2 30.1 293 88-403 26-323 (386)
59 PRK11375 allantoin permease; P 98.7 5.5E-05 1.2E-09 76.5 31.1 342 55-403 22-392 (484)
60 TIGR00813 sss transporter, SSS 98.7 6.7E-05 1.5E-09 74.6 31.0 150 57-218 2-153 (407)
61 PRK12488 acetate permease; Pro 98.6 0.00028 6.2E-09 72.7 34.4 153 57-221 66-220 (549)
62 PF00474 SSF: Sodium:solute sy 98.6 8.1E-05 1.8E-09 74.1 28.6 154 57-222 5-161 (406)
63 TIGR02119 panF sodium/pantothe 98.6 0.00055 1.2E-08 69.5 34.9 232 56-299 38-292 (471)
64 PRK09442 panF sodium/panthothe 98.6 0.0004 8.7E-09 70.7 33.7 229 57-297 40-291 (483)
65 PRK11017 codB cytosine permeas 98.6 0.00017 3.6E-09 71.5 30.0 288 88-402 39-331 (404)
66 TIGR02711 symport_actP cation/ 98.5 0.0015 3.3E-08 67.3 34.8 149 57-217 66-216 (549)
67 PF02133 Transp_cyt_pur: Perme 98.5 3.3E-06 7.2E-11 84.9 14.6 340 56-403 5-367 (440)
68 TIGR00796 livcs branched-chain 98.4 0.0008 1.7E-08 65.4 29.1 313 67-410 2-346 (378)
69 COG1953 FUI1 Cytosine/uracil/t 98.4 0.00091 2E-08 65.8 29.0 342 54-402 35-405 (497)
70 PRK09395 actP acetate permease 98.4 0.0027 5.8E-08 65.7 33.9 150 56-217 67-218 (551)
71 COG0591 PutP Na+/proline sympo 98.4 0.0024 5.2E-08 64.9 32.2 150 56-217 36-191 (493)
72 TIGR02121 Na_Pro_sym sodium/pr 98.3 0.0049 1.1E-07 62.8 34.0 153 57-220 35-195 (487)
73 TIGR03648 Na_symport_lg probab 98.2 0.0048 1E-07 63.9 32.2 150 56-217 30-181 (552)
74 COG1914 MntH Mn2+ and Fe2+ tra 98.2 0.0073 1.6E-07 59.2 30.4 358 60-437 17-406 (416)
75 PRK15419 proline:sodium sympor 98.2 0.0094 2E-07 61.0 32.8 150 57-217 39-196 (502)
76 PRK10484 putative transporter; 98.2 0.0088 1.9E-07 61.5 32.4 156 56-218 36-198 (523)
77 TIGR00835 agcS amino acid carr 98.1 0.0084 1.8E-07 59.0 27.6 145 58-215 45-199 (425)
78 KOG1288 Amino acid transporter 98.0 0.00035 7.6E-09 70.1 16.7 54 244-297 295-349 (945)
79 PRK00701 manganese transport p 97.9 0.027 5.9E-07 56.2 32.9 46 121-166 94-139 (439)
80 COG4147 DhlC Predicted symport 97.8 0.047 1E-06 53.4 27.8 180 108-299 92-293 (529)
81 KOG2082 K+/Cl- cotransporter K 97.6 0.011 2.3E-07 60.5 20.5 183 249-437 416-620 (1075)
82 PF01235 Na_Ala_symp: Sodium:a 97.6 0.066 1.4E-06 52.5 25.0 89 54-142 13-110 (416)
83 PF02554 CstA: Carbon starvati 97.5 0.013 2.8E-07 55.7 17.7 105 59-164 51-157 (376)
84 PF01566 Nramp: Natural resist 97.3 0.18 4E-06 49.1 28.1 94 104-210 27-122 (358)
85 PHA02764 hypothetical protein; 97.1 0.011 2.3E-07 54.6 12.4 93 56-149 10-105 (399)
86 PF00209 SNF: Sodium:neurotran 97.1 0.23 4.9E-06 51.2 23.8 101 58-165 3-109 (523)
87 COG0733 Na+-dependent transpor 96.7 0.69 1.5E-05 45.4 28.0 219 57-280 6-252 (439)
88 KOG2083 Na+/K+ symporter [Inor 96.6 0.01 2.2E-07 59.3 8.6 202 79-293 51-274 (643)
89 PRK15015 carbon starvation pro 96.5 0.074 1.6E-06 54.3 14.3 103 60-163 83-187 (701)
90 COG1966 CstA Carbon starvation 96.3 0.16 3.6E-06 50.7 15.3 105 59-164 51-157 (575)
91 TIGR01197 nramp NRAMP (natural 96.3 1.2 2.7E-05 43.7 29.0 47 121-167 64-110 (390)
92 KOG2349 Na+:iodide/myo-inosito 95.9 0.17 3.6E-06 51.6 13.4 232 57-301 44-298 (585)
93 COG1115 AlsT Na+/alanine sympo 95.2 3.7 7.9E-05 40.5 26.4 315 55-391 58-417 (452)
94 TIGR00796 livcs branched-chain 95.1 0.34 7.5E-06 47.3 12.1 66 121-196 255-320 (378)
95 KOG2466 Uridine permease/thiam 94.9 4.6 9.9E-05 40.1 21.6 252 53-313 49-331 (572)
96 COG4145 PanF Na+/panthothenate 94.2 5.4 0.00012 38.3 28.3 235 58-304 39-299 (473)
97 PF05525 Branch_AA_trans: Bran 93.9 0.45 9.8E-06 47.0 9.9 66 122-197 262-327 (427)
98 COG1114 BrnQ Branched-chain am 91.9 2.3 5E-05 41.4 11.2 66 121-196 263-328 (431)
99 PF05525 Branch_AA_trans: Bran 87.3 33 0.00073 34.1 21.2 315 60-411 3-353 (427)
100 PRK15433 branched-chain amino 86.8 6.6 0.00014 39.0 10.5 64 124-198 268-331 (439)
101 KOG3659 Sodium-neurotransmitte 85.8 46 0.001 34.3 19.5 75 57-132 79-159 (629)
102 PLN02680 carbon-monoxide oxyge 83.4 32 0.0007 30.9 12.3 100 237-342 44-143 (232)
103 PF02028 BCCT: BCCT family tra 82.3 61 0.0013 33.0 28.7 26 55-80 70-95 (485)
104 KOG4812 Golgi-associated prote 81.5 3.2 6.9E-05 36.9 5.1 83 372-458 164-262 (262)
105 KOG3660 Sodium-neurotransmitte 80.5 81 0.0018 33.2 19.9 41 58-98 36-78 (629)
106 KOG1289 Amino acid transporter 79.7 44 0.00095 34.1 12.9 48 121-168 325-372 (550)
107 KOG1287 Amino acid transporter 73.7 23 0.0005 35.6 9.2 103 122-225 274-381 (479)
108 cd08762 Cyt_b561_CYBASC3 Verte 62.5 1E+02 0.0022 26.6 12.6 107 229-341 24-133 (179)
109 COG3817 Predicted membrane pro 61.4 1.3E+02 0.0028 27.4 10.7 37 418-454 165-201 (313)
110 PLN02810 carbon-monoxide oxyge 59.7 1.3E+02 0.0029 27.0 12.0 108 229-342 34-143 (231)
111 KOG1291 Mn2+ and Fe2+ transpor 57.0 2.2E+02 0.0048 28.6 22.3 47 121-167 89-135 (503)
112 PRK15433 branched-chain amino 53.6 2.5E+02 0.0054 28.2 26.4 312 61-410 9-355 (439)
113 PF05915 DUF872: Eukaryotic pr 51.8 1.1E+02 0.0024 24.3 7.6 67 59-126 38-112 (115)
114 PF08019 DUF1705: Domain of un 51.2 83 0.0018 26.4 7.4 24 397-420 72-95 (156)
115 PF12794 MscS_TM: Mechanosensi 50.0 2.5E+02 0.0054 27.1 13.9 40 275-314 46-85 (340)
116 TIGR00909 2A0306 amino acid tr 48.6 2.8E+02 0.0061 27.5 16.3 48 121-168 264-311 (429)
117 TIGR00907 2A0304 amino acid pe 48.3 3.1E+02 0.0067 27.8 17.2 48 121-168 289-337 (482)
118 COG0814 SdaC Amino acid permea 47.7 3E+02 0.0065 27.4 12.4 82 333-414 284-376 (415)
119 PRK13183 psbN photosystem II r 45.6 24 0.00051 22.6 2.3 29 276-304 5-33 (46)
120 PF02468 PsbN: Photosystem II 45.2 22 0.00049 22.5 2.2 27 278-304 4-30 (43)
121 CHL00020 psbN photosystem II p 41.3 22 0.00048 22.4 1.7 27 278-304 4-30 (43)
122 PRK09598 lipid A phosphoethano 41.2 2.3E+02 0.0049 29.3 10.1 27 396-422 126-152 (522)
123 PRK09928 choline transport pro 40.8 4.8E+02 0.01 27.9 27.0 162 56-224 89-279 (679)
124 PRK10929 putative mechanosensi 39.7 6.3E+02 0.014 28.9 15.6 28 275-302 520-547 (1109)
125 TIGR00945 tatC Twin arginine t 39.3 2.8E+02 0.0061 24.7 12.0 39 314-352 52-90 (215)
126 cd08765 Cyt_b561_CYBRD1 Verteb 39.0 2.3E+02 0.0051 23.7 9.4 68 273-342 44-111 (153)
127 PF07086 DUF1352: Protein of u 37.7 94 0.002 27.0 5.7 56 402-457 82-137 (186)
128 TIGR03750 conj_TIGR03750 conju 37.3 2.1E+02 0.0045 22.6 7.0 63 57-119 15-79 (111)
129 PRK11598 putative metal depend 37.3 1.8E+02 0.0039 30.2 8.7 15 399-413 129-143 (545)
130 PF05805 L6_membrane: L6 membr 37.0 95 0.0021 27.1 5.6 62 387-448 46-117 (195)
131 PF00950 ABC-3: ABC 3 transpor 34.1 3.8E+02 0.0082 24.7 12.8 50 388-443 184-233 (257)
132 CHL00182 tatC Sec-independent 33.8 3.8E+02 0.0082 24.6 11.3 35 315-349 74-108 (249)
133 TIGR00905 2A0302 transporter, 32.5 5.4E+02 0.012 26.0 12.2 46 123-168 270-315 (473)
134 PLN02351 cytochromes b561 fami 32.3 3.9E+02 0.0085 24.3 12.5 96 240-342 51-146 (242)
135 PF11085 YqhR: Conserved membr 32.2 2.3E+02 0.0049 24.2 6.8 62 72-146 47-111 (173)
136 PF01235 Na_Ala_symp: Sodium:a 31.2 4.4E+02 0.0095 26.3 9.8 37 130-166 302-338 (416)
137 PF07954 DUF1689: Protein of u 31.2 1.2E+02 0.0027 25.3 5.2 63 390-452 34-98 (152)
138 KOG1305 Amino acid transporter 30.0 5.4E+02 0.012 25.6 10.4 133 304-440 268-406 (411)
139 KOG1619 Cytochrome b [Energy p 29.2 4.4E+02 0.0095 23.9 10.0 108 229-342 43-152 (245)
140 PHA02680 ORF090 IMV phosphoryl 29.2 1.3E+02 0.0029 22.2 4.4 54 250-303 18-71 (91)
141 PRK11281 hypothetical protein; 28.9 9.3E+02 0.02 27.6 15.7 29 275-303 542-570 (1113)
142 COG0534 NorM Na+-driven multid 28.5 5.3E+02 0.012 26.0 10.4 30 270-299 311-340 (455)
143 PF03169 OPT: OPT oligopeptide 28.4 4.7E+02 0.01 27.7 10.4 56 76-133 369-427 (624)
144 COG2223 NarK Nitrate/nitrite t 28.3 6.1E+02 0.013 25.3 10.3 99 71-170 147-253 (417)
145 PRK10921 twin-arginine protein 27.5 4.9E+02 0.011 24.0 10.1 38 315-352 64-101 (258)
146 KOG2466 Uridine permease/thiam 26.9 2.1E+02 0.0045 29.0 6.6 158 132-295 340-514 (572)
147 PF06800 Sugar_transport: Suga 25.9 5.2E+02 0.011 24.1 8.7 35 379-414 214-248 (269)
148 PF14256 YwiC: YwiC-like prote 25.7 3.6E+02 0.0078 21.8 7.8 38 382-421 23-60 (129)
149 PF11460 DUF3007: Protein of u 25.6 42 0.00092 25.9 1.4 9 74-82 9-17 (104)
150 cd08764 Cyt_b561_CG1275_like N 24.5 5.1E+02 0.011 23.1 9.2 110 229-342 13-123 (214)
151 PRK09928 choline transport pro 22.1 9.9E+02 0.022 25.6 11.6 33 180-212 452-484 (679)
152 PF02028 BCCT: BCCT family tra 22.0 8.2E+02 0.018 25.0 10.2 46 180-225 432-477 (485)
153 TIGR00927 2A1904 K+-dependent 21.5 4.5E+02 0.0098 29.3 8.4 17 96-112 942-958 (1096)
154 PF10716 NdhL: NADH dehydrogen 20.7 3.5E+02 0.0076 19.8 5.1 46 384-430 14-61 (81)
155 PF11345 DUF3147: Protein of u 20.2 4.3E+02 0.0093 20.6 6.1 10 405-414 41-50 (108)
156 PF04835 Pox_A9: A9 protein co 20.1 2.8E+02 0.006 18.5 4.1 28 277-304 23-50 (54)
No 1
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-58 Score=438.06 Aligned_cols=387 Identities=24% Similarity=0.353 Sum_probs=351.6
Q ss_pred ccCCCCCCchHHHHHHHHHhhhhhccchhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhC-----CCCCCHHHH
Q 042581 53 ENNSHAGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKN-----PKSRSYIDI 126 (459)
Q Consensus 53 ~~~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~y~~~ 126 (459)
..+.++..|..++..|+.++++|+|+|++|++|+++||+ |.+..++++.++.||++.+++|.++. ....+|++.
T Consensus 40 ~~~~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~ 119 (449)
T KOG1304|consen 40 LRDREHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAET 119 (449)
T ss_pred cccCCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHH
Confidence 334456799999999999999999999999999999998 99999999999999999999986431 113677777
Q ss_pred HHHH----------hchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-ccCccccccchhhHHHHHHHHHHHhh
Q 042581 127 GQHA----------FGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGT-SLDLSWAKLSTSQMLTVIAVLIALPS 195 (459)
Q Consensus 127 ~~~~----------~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~pl 195 (459)
++.+ +||++|.+++..+.+.++|.|++|.++.++.++++++.. .... +.+.++.+.....+++
T Consensus 120 ~~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~------s~~~~i~~~~~~~lll 193 (449)
T KOG1304|consen 120 AESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVL------SVRLYILIQLPPLLLL 193 (449)
T ss_pred HHHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCc------cHHHHHHHHHHHHHHH
Confidence 6655 589999999999999999999999999999999999832 2222 5788899999999999
Q ss_pred cccCCCCChhHHHHHHHHHHHHHHHHhhhhhhccCcccCCCCCcccCCchhhHHHHHhhhcccceeccchhhhccCCccc
Q 042581 196 LWLRDLSSISFLSVGGILMSVLIFLSVAFTAIFGGVKANHRIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSKF 275 (459)
Q Consensus 196 ~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~~ 275 (459)
+++|+++.++.+|.++.++.++.++++.++...+.++.++.....++.+++..+|+.+|||+|+..+.|++++||+|+++
T Consensus 194 ~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F 273 (449)
T KOG1304|consen 194 NLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKF 273 (449)
T ss_pred HHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhc
Confidence 99999999999999999999998888888888776666666667778999999999999999999999999999999999
Q ss_pred h---hHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHhhcCCCchhHHHHHHHHHHHHhhhhccchhhhhHHHHHhhCCC
Q 042581 276 T---KVSIVSFTLVTALNTALGFMGTKLFGPGVNSQITLSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPI 352 (459)
Q Consensus 276 ~---~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~ 352 (459)
+ +++..++.+++++|..+|++||++||+++++.+++|+|+ +++...+++++++.++.+||++++|..+.+++.+.+
T Consensus 274 ~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~ 352 (449)
T KOG1304|consen 274 PGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRK 352 (449)
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHH
Confidence 8 999999999999999999999999999999999999999 888889999999999999999999999999998876
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHhhhHhHhHHHHhhhhHHHHHhcCCC---cchhHHHHHHHHHh
Q 042581 353 SLSARSKMMIRSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVSICICLIFPCAFYIKISWPH---ISQRLLILNVTLIG 429 (459)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~~~---~~~~~~~~~~~~~~ 429 (459)
+..++++++..+.+|..++.+++.+|..+||++.+++++|+++++.+.+++|++++++.++++ +.+|+.+.+..+++
T Consensus 353 k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~ 432 (449)
T KOG1304|consen 353 KFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIV 432 (449)
T ss_pred hcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHH
Confidence 666555788889999999999999999999999999999999999999999999999998875 34799999999999
Q ss_pred hhhhhhhhhhHHHHHHH
Q 042581 430 FGFLLGFSGTTFSLKSL 446 (459)
Q Consensus 430 ~g~~~~v~~~~~~i~~l 446 (459)
+|++.++.|||+++.++
T Consensus 433 ~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 433 FGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHHHHHhhhhhcC
Confidence 99999999999999864
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=4.8e-55 Score=436.30 Aligned_cols=389 Identities=20% Similarity=0.283 Sum_probs=322.0
Q ss_pred CCCCchHHHHHHHHHhhhhhccchhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchhh
Q 042581 57 HAGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKG 135 (459)
Q Consensus 57 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~~ 135 (459)
-++.+..++.+|++|+++|+|+|++|++|+++||+ |++++++++.++.|+.+++.+++++.+. ++|+|++++++||++
T Consensus 57 ~~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~~-~sY~~la~~~~G~~g 135 (467)
T PTZ00206 57 IPPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTNI-RTYEGVARVLLGPWG 135 (467)
T ss_pred cCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CCHHHHHHHHhCHHH
Confidence 46778899999999999999999999999999999 9999999999999999999999887654 899999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccc-cchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHH
Q 042581 136 RAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAK-LSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILM 214 (459)
Q Consensus 136 ~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 214 (459)
++++++.+.+.++|.|++|+++.+|.++.+++.......... ...+.++.++..++++|++++|+++.++++|.+++++
T Consensus 136 ~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~ 215 (467)
T PTZ00206 136 SYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSF 215 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHH
Confidence 999999999999999999999999999988865432111101 1122334456677899999999999999999999988
Q ss_pred HHHHHHHhhhhhhccCcccC-----------CCCCccc-CCchhhHHHHHhhhcccceeccchhhhccCCc--cchhHHH
Q 042581 215 SVLIFLSVAFTAIFGGVKAN-----------HRIPVLN-LHKIPHISGLYIFSYAGHIVFPNLYKAMKDPS--KFTKVSI 280 (459)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~-~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~--~~~~~~~ 280 (459)
+++.++.+++....++.+.. .+...++ ..+.+.++++++|||.||.+++++++|||||+ |+.+++.
T Consensus 216 i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~ 295 (467)
T PTZ00206 216 MVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLAST 295 (467)
T ss_pred HHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHH
Confidence 87777766665544322110 0111122 23578899999999999999999999999854 7889999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCChhhHhhcC-CCchhHHHHHHHHHHHHhhhhccchhhhhHHHHHhhCCCCccchhh
Q 042581 281 VSFTLVTALNTALGFMGTKLFGPGVNSQITLSM-PQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPISLSARSK 359 (459)
Q Consensus 281 ~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~-~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~ 359 (459)
.++.+++++|.++|++||+.||++++++++.|+ |.++....++++...+.++++||++.+|+|+.+++.+..+.++ .+
T Consensus 296 ~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~~~-~~ 374 (467)
T PTZ00206 296 IAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDARK-VA 374 (467)
T ss_pred HHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCccc-Cc
Confidence 999999999999999999999999999999999 4566777788898999999999999999999999987443321 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHhhhHhHhHHHHhhhhHHHHHh---cCCCcchhHHHHHHHHHhhhhhhhh
Q 042581 360 MMIRSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVSICICLIFPCAFYIKI---SWPHISQRLLILNVTLIGFGFLLGF 436 (459)
Q Consensus 360 ~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~Ga~~~~~~~~ilP~l~~l~~---~~~~~~~~~~~~~~~~~~~g~~~~v 436 (459)
.+.+...+..+...++++|+.+|+++.+++++||+++..++|++|+++|++. .+++.++++.+.+++++++|++.++
T Consensus 375 ~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v 454 (467)
T PTZ00206 375 FWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIV 454 (467)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEE
Confidence 1222235556666788999999999999999999999999999999999984 2333445566889999999999999
Q ss_pred hhhHHHHHHHH
Q 042581 437 SGTTFSLKSLI 447 (459)
Q Consensus 437 ~~~~~~i~~l~ 447 (459)
+|||+++++.+
T Consensus 455 ~Gt~~si~~~~ 465 (467)
T PTZ00206 455 FGTGATIWGVT 465 (467)
T ss_pred ecchhHhhHHh
Confidence 99999999876
No 3
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-51 Score=397.05 Aligned_cols=393 Identities=31% Similarity=0.490 Sum_probs=346.2
Q ss_pred ccCCCCCCchHHHHHHHHHhhhhhccchhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCC-----HHHH
Q 042581 53 ENNSHAGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRS-----YIDI 126 (459)
Q Consensus 53 ~~~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----y~~~ 126 (459)
+...+++.|++++.++.+|.++|.|+|++|++++++||+ |+++++..++++.||+.+|.+|.+.++...+ |.|+
T Consensus 31 ~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl 110 (437)
T KOG1303|consen 31 PITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDL 110 (437)
T ss_pred ccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHH
Confidence 444567799999999999999999999999999999999 8999999999999999999999988776555 9999
Q ss_pred HHHHhchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhH
Q 042581 127 GQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISF 206 (459)
Q Consensus 127 ~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 206 (459)
++++||+++++++.+.+.+.+++.++.|.+..+|.+..+++....+.. ..+ .+.+.+++.++.+|+++++|++.+++
T Consensus 111 ~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~--~l~-~~~f~iif~~i~~~~s~lp~~~~l~~ 187 (437)
T KOG1303|consen 111 GQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN--SLD-KQYFIIIFGLIVLPLSQLPNFHSLSY 187 (437)
T ss_pred HHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc--ccc-ceehhhhHHHHHHHHHHCCCcchhHH
Confidence 999999988999999999999999999999999999999877654321 222 57789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCcccC-CCCCcccCCch---hhHHHHHhhhcccceeccchhhhccCCccchhHHHHH
Q 042581 207 LSVGGILMSVLIFLSVAFTAIFGGVKAN-HRIPVLNLHKI---PHISGLYIFSYAGHIVFPNLYKAMKDPSKFTKVSIVS 282 (459)
Q Consensus 207 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~fsf~~~~~i~~i~~e~k~p~~~~~~~~~~ 282 (459)
++..+.++.+....+..+.+..++.+.. +.....++... +.+++++.|+|.+|..+|+++.+||+|.+++|++.++
T Consensus 188 ~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~lis 267 (437)
T KOG1303|consen 188 LSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALLIS 267 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhhHHHHH
Confidence 9999999998888888888887775542 22333333222 6999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCChhhHhhcCCCchhHHHHHHHHHHHHhhhhccchhhhhHHHHHhhCCCCccc--hhhH
Q 042581 283 FTLVTALNTALGFMGTKLFGPGVNSQITLSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPISLSA--RSKM 360 (459)
Q Consensus 283 ~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~--~~~~ 360 (459)
+.+++++|+.+++.||++|||+++|+++.++++..+....+++++.++.+.+|.+...|..+.+|+....+..+ +...
T Consensus 268 ~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~ 347 (437)
T KOG1303|consen 268 YIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSL 347 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcccccccc
Confidence 99999999999999999999999999999997557888899999999999999999999999999987644431 1233
Q ss_pred HHHHHHHHHHHHHHHHHHHhCchHHHHHHHhhhHhHhHHHHhhhhHHHHHhcCCCcchhHHHHHHHH-Hhhhhhhhhhhh
Q 042581 361 MIRSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVSICICLIFPCAFYIKISWPHISQRLLILNVTL-IGFGFLLGFSGT 439 (459)
Q Consensus 361 ~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~~-~~~g~~~~v~~~ 439 (459)
..|.+.|..+++.+.++|+.+|+|+.+++++|++....+.+++|+++|++.++.++...+.++++.. +++|+++++...
T Consensus 348 ~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~ 427 (437)
T KOG1303|consen 348 VLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAA 427 (437)
T ss_pred ceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHH
Confidence 4566799999999999999999999999999999999999999999999998877666677777777 799999999999
Q ss_pred HHHHHHHHH
Q 042581 440 TFSLKSLIH 448 (459)
Q Consensus 440 ~~~i~~l~~ 448 (459)
..++++++.
T Consensus 428 ~~~~~~li~ 436 (437)
T KOG1303|consen 428 VGGVRSLII 436 (437)
T ss_pred HHHHHHHhh
Confidence 999888875
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1.9e-48 Score=386.68 Aligned_cols=389 Identities=15% Similarity=0.177 Sum_probs=318.0
Q ss_pred ccCCCCCCchHHHHHHHHHhhhhhccchhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhh----hCCC-C------
Q 042581 53 ENNSHAGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLD----KNPK-S------ 120 (459)
Q Consensus 53 ~~~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~----~~~~-~------ 120 (459)
+....++.+..++.+++++..+|+|+|+||++|+++||+ |++.+++.++++.||++++.++.. |+++ .
T Consensus 39 ~~~~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~ 118 (473)
T PLN03074 39 KSLLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNH 118 (473)
T ss_pred eecccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHH
Confidence 334467889999999999999999999999999999999 999999999999999999987632 2332 1
Q ss_pred -CCHHHHHHHHhchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccC
Q 042581 121 -RSYIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLR 199 (459)
Q Consensus 121 -~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~ 199 (459)
.+|.|+++..+||+++.+..+...+++++.|+.|.+..++.+..+.+.. +.+.|..+..++.+|++++|
T Consensus 119 ~~~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~----------~~~~~~~i~~~v~~~~~~i~ 188 (473)
T PLN03074 119 VIQWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNL----------DKRTWTYIFGACCATTVFIP 188 (473)
T ss_pred HHHHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCc----------CCCeEEeehHHHHHHHHHcc
Confidence 2568888889999999999999999999999999998888777663221 35666777888888899999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHhhhhhhccCcccC-CCCCcccCCchhhHHHHHhhhcccceeccchhhhccCCccchhH
Q 042581 200 DLSSISFLSVGGILMSVLIFLSVAFTAIFGGVKAN-HRIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSKFTKV 278 (459)
Q Consensus 200 ~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~~~~~ 278 (459)
+++.+++++.+++.++++....++......+.+++ +...+.++..++.++++++|+|+||..+|++++|||||+|+++.
T Consensus 189 sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~~ 268 (473)
T PLN03074 189 SFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYI 268 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhcccch
Confidence 99999999999988766544444333333221111 11122344456778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCh--hhHhhcCCCchhHHHHHHHHHHHHhhhhccchhhhhHHHHHhhCCCCccc
Q 042581 279 SIVSFTLVTALNTALGFMGTKLFGPGVN--SQITLSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPISLSA 356 (459)
Q Consensus 279 ~~~~~~~~~~~Y~~~g~~gy~~fg~~~~--~~il~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~ 356 (459)
...+...++.+|+.+++.||+.|||++. ++.+.++|++. ...+++++..++.+.+|++++.|+.+.+|+.++.+.
T Consensus 269 ~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~-~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~~-- 345 (473)
T PLN03074 269 YLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSG-WRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVHD-- 345 (473)
T ss_pred HHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccc--
Confidence 9999999999999999999999999876 45677788654 467899999999999999999999999998875442
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHhhhHhHhHHHHhhhhHHHHHhcCCC-------------cch--hHH
Q 042581 357 RSKMMIRSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVSICICLIFPCAFYIKISWPH-------------ISQ--RLL 421 (459)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~~~-------------~~~--~~~ 421 (459)
++....|.++|+.++..++++|..+|+++.+++++||++++.+++++|+++|++.++++ .++ |+.
T Consensus 346 ~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (473)
T PLN03074 346 TKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMY 425 (473)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceeh
Confidence 22345677899999999999999999999999999999999999999999999866542 222 346
Q ss_pred HHHHHHHhh-hhhhhhhhhHHHHHHHHHHhcccc
Q 042581 422 ILNVTLIGF-GFLLGFSGTTFSLKSLIHTLQDAH 454 (459)
Q Consensus 422 ~~~~~~~~~-g~~~~v~~~~~~i~~l~~~~~~~~ 454 (459)
+.+++++++ |++.++.|+|+++.++++++++.+
T Consensus 426 ~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~ 459 (473)
T PLN03074 426 VVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFG 459 (473)
T ss_pred hhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhh
Confidence 899999986 555578999999999999998843
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1.3e-51 Score=410.48 Aligned_cols=382 Identities=29% Similarity=0.445 Sum_probs=329.9
Q ss_pred CCCchHHHHHHHHHhhhhhccchhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhC---CCCCCHHHHHHHHhch
Q 042581 58 AGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKN---PKSRSYIDIGQHAFGR 133 (459)
Q Consensus 58 ~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~y~~~~~~~~G~ 133 (459)
||.|++++.++++|+++|+|+|++|++|+++||+ |++++++++.++.++.+++.+++.+. ++..+|+|++++.+||
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 5789999999999999999999999999999999 99999999999999999999998763 3569999999999999
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHH
Q 042581 134 KGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGIL 213 (459)
Q Consensus 134 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 213 (459)
++++++++++.+.++|.+++|.+..+|.+.++++....+ ...++.++.++..++++|++++|+++.+++.+.++.+
T Consensus 81 ~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~----~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~ 156 (409)
T PF01490_consen 81 KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD----LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLF 156 (409)
T ss_pred cccccccchheeccccccceeEEEeeeeeeccccccccc----ccccccccccccccccccccccchhhHHHHHhhhhhh
Confidence 999999999999999999999999999999998775432 1124667778889999999999999999999999998
Q ss_pred HHHHHHHHhhhhhhccCc----ccCCC--CCcccCCchhhHHHHHhhhcccceeccchhhhccCCccch---hHHHHHHH
Q 042581 214 MSVLIFLSVAFTAIFGGV----KANHR--IPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSKFT---KVSIVSFT 284 (459)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~~~---~~~~~~~~ 284 (459)
+.+..+....+....... +.+.+ ....++.+++.++++++|||.||.++|++.+|||+|+|++ ++...++.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~ 236 (409)
T PF01490_consen 157 SIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMI 236 (409)
T ss_pred ccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhh
Confidence 887643333322222211 11111 1234566899999999999999999999999999999876 99999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHhhcCCCchhHHHHHHHHHHHHhhhhccchhhhhHHHHHhhCCCC--------ccc
Q 042581 285 LVTALNTALGFMGTKLFGPGVNSQITLSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPIS--------LSA 356 (459)
Q Consensus 285 ~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~--------~~~ 356 (459)
+++++|.++|+.||++||++++++++.|++++++...++++++.++.+.+||++.+|.++.+++.+.++ .++
T Consensus 237 ~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~ 316 (409)
T PF01490_consen 237 ICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNT 316 (409)
T ss_pred hhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccc
Confidence 999999999999999999999999999999988888899999999999999999999999999988642 122
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHhhhHhHhHHHHhhhhHHHHHhcCCCcchhHH-----HHHHHHHhhh
Q 042581 357 RSKMMIRSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVSICICLIFPCAFYIKISWPHISQRLL-----ILNVTLIGFG 431 (459)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~~~~~~~~~-----~~~~~~~~~g 431 (459)
+.++.+++..|+.++.+++++|..+||++.+++++|++++..+.|++|+++|++.+++++.++++ ...+..+++|
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 396 (409)
T PF01490_consen 317 PSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFG 396 (409)
T ss_pred cccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEe
Confidence 33445567799999999999999999999999999999999999999999999998886543322 4578889999
Q ss_pred hhhhhhhhHHHH
Q 042581 432 FLLGFSGTTFSL 443 (459)
Q Consensus 432 ~~~~v~~~~~~i 443 (459)
+++++.|+|+++
T Consensus 397 ~~~~~~~~~~~i 408 (409)
T PF01490_consen 397 VVLMVFGTYQSI 408 (409)
T ss_pred eehhHHhHHHHc
Confidence 999999999875
No 6
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-45 Score=329.00 Aligned_cols=392 Identities=24% Similarity=0.367 Sum_probs=348.1
Q ss_pred CCCCCCchHHHHHHHHHhhhhhccchhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-------CCCHHHHH
Q 042581 55 NSHAGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPK-------SRSYIDIG 127 (459)
Q Consensus 55 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~y~~~~ 127 (459)
+.+.+++-+|+..|+.|++-|.=+++||++....||.++.+++.++.+++|++.+|++|..+.++ .++|.+++
T Consensus 112 e~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA 191 (524)
T KOG4303|consen 112 EASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYWSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIA 191 (524)
T ss_pred CCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchhHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHH
Confidence 44578999999999999999999999999999999999999999999999999999999876552 57999999
Q ss_pred HHHhchh-hHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhH
Q 042581 128 QHAFGRK-GRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISF 206 (459)
Q Consensus 128 ~~~~G~~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 206 (459)
..+++|. |+..+.+.+.+..+..|+.|.+..+|.+++-+|..+.+ .+-|++++...++|+.++++++..+.
T Consensus 192 ~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd--------~~sWm~i~~a~LLpc~FLk~Lk~VS~ 263 (524)
T KOG4303|consen 192 DFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVD--------KASWMMITSASLLPCSFLKDLKIVSR 263 (524)
T ss_pred HHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCcc--------ccchhhhhhHHHhhhHHHHHHHHHHH
Confidence 9999885 66888899999999999999999999999998876643 57788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcc--CcccCCCCCcccCCchhhHHHHHhhhcccceeccchhhhccCCccchhHHHHHHH
Q 042581 207 LSVGGILMSVLIFLSVAFTAIFG--GVKANHRIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSKFTKVSIVSFT 284 (459)
Q Consensus 207 ~s~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~~~~~~~~~~~ 284 (459)
+|.+..+.-+++-++++.++... +..+..-....|..+++.++++++|+|..|..+|++...|++|++++..+-++-+
T Consensus 264 lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~WsHI 343 (524)
T KOG4303|consen 264 LSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWSHI 343 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHheeeeehHHH
Confidence 99999888888777777776544 3444443344677889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHhhcCCCchhHHHHHHHHHHHHhhhhccchhhhhHHHHHhhCCCCccc--------
Q 042581 285 LVTALNTALGFMGTKLFGPGVNSQITLSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPISLSA-------- 356 (459)
Q Consensus 285 ~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~-------- 356 (459)
...++-..+|..+|++|++.++..++.|+|+ ..+....+++..+-.+.+||+-++.+.+.+++.+.+...+
T Consensus 344 AAaVfK~~Fg~~~fLTf~~~TqevItnnLp~-qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys 422 (524)
T KOG4303|consen 344 AAAVFKVVFGMLGFLTFGELTQEVITNNLPN-QSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYS 422 (524)
T ss_pred HHHHHHHHHHHheeeeechhhHHHHhcCCCc-cchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeC
Confidence 9999999999999999999999999999997 4566688999999999999999999999999977332211
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHhhhHhHhHHHHhhhhHHHHHhcCCCcchhHHHHHHHHHhhhhhh
Q 042581 357 --RSKMMIRSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVSICICLIFPCAFYIKISWPHISQRLLILNVTLIGFGFLL 434 (459)
Q Consensus 357 --~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~g~~~ 434 (459)
...+-|...+|..+++.+.+.|+.+|.+..+++++|+++++.++|++|+++|+++.+++..+.++..+..++++|..+
T Consensus 423 ~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~ 502 (524)
T KOG4303|consen 423 PDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSV 502 (524)
T ss_pred CCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeE
Confidence 223455667899999999999999999999999999999999999999999999999988888999999999999999
Q ss_pred hhhhhHHHHHHHHHHhccccc
Q 042581 435 GFSGTTFSLKSLIHTLQDAHG 455 (459)
Q Consensus 435 ~v~~~~~~i~~l~~~~~~~~~ 455 (459)
++.|.|.+..++++++++..+
T Consensus 503 ~vsG~y~S~~~Li~A~~~~~~ 523 (524)
T KOG4303|consen 503 CVSGVYFSSMELIRAINSADS 523 (524)
T ss_pred EEEeEehhhHHHHHHHhccCC
Confidence 999999999999999988765
No 7
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-43 Score=338.89 Aligned_cols=386 Identities=23% Similarity=0.366 Sum_probs=327.8
Q ss_pred CCCCchHHHHHHHHHhhhhhccchhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchhh
Q 042581 57 HAGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKG 135 (459)
Q Consensus 57 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~~ 135 (459)
+++.|...++++++|+++|+|++++|++|++.|.+ |++++.++++++.++.+++.+++.+.++ ++|+++++..+|+.+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~-~ty~~l~~~~~g~~g 81 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGE-RTYSSLGDLIFGKLG 81 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCC-CCHHHHHHHHcCCCc
Confidence 56778999999999999999999999999999988 9999999999999999999999999888 699999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCcc--ccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHH
Q 042581 136 RAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLS--WAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGIL 213 (459)
Q Consensus 136 ~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 213 (459)
+....+.......| +++|.+..+|.+..+......+.+ .+..+++..+.+....++.|+++.|+++.+++.+.++..
T Consensus 82 ~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~ 160 (411)
T KOG1305|consen 82 KVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSALSLA 160 (411)
T ss_pred eeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 77777777777666 799999999998866443322111 001222233688889999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhccCc---ccCCCCC-cccCCchhhHHHHHhhhcccceeccchhhhccCCc--cchhHHHHHHHHHH
Q 042581 214 MSVLIFLSVAFTAIFGGV---KANHRIP-VLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPS--KFTKVSIVSFTLVT 287 (459)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~--~~~~~~~~~~~~~~ 287 (459)
+.+.+++.+++....... +.....+ ...+++.+.++++++|+|.||+++.++++|||||+ +++++...+...++
T Consensus 161 ~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~~ 240 (411)
T KOG1305|consen 161 SVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILAT 240 (411)
T ss_pred HHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHHH
Confidence 999988888888776432 1111111 12235899999999999999999999999999998 49999999999999
Q ss_pred HHHHHHHHHHHhhcCCCChhhHhhcCCCchhH------HHHHHHHHHHHhhhhccchhhhhHHHHHhhCCCCc-----cc
Q 042581 288 ALNTALGFMGTKLFGPGVNSQITLSMPQHLVV------TKIALWATVLTPMTKYALEFAPLAIQLENHLPISL-----SA 356 (459)
Q Consensus 288 ~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~------~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~-----~~ 356 (459)
++|...|.+||+.||+++.+|++.+++..+.. ....+....+..+.++|+..+|+|..+.+.+..+. ..
T Consensus 241 ~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~~s 320 (411)
T KOG1305|consen 241 LIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTSFS 320 (411)
T ss_pred HHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCCcc
Confidence 99999999999999999999999999875433 46789999999999999999999999888763332 22
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHhhhHhHhHHHHhhhhHHHHHhcCCCcchhHHHHHHHHHhhhhhhhh
Q 042581 357 RSKMMIRSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVSICICLIFPCAFYIKISWPHISQRLLILNVTLIGFGFLLGF 436 (459)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~g~~~~v 436 (459)
..++. +++..++..+.+.|+.+|+++.++.++||+++..++|++|+++|++..++ +.+++...++..++++...+
T Consensus 321 ~~r~~---~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~~~~~~i 395 (411)
T KOG1305|consen 321 GKRHF---VITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLILGVLLSI 395 (411)
T ss_pred ceehh---HHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHHHHHHHH
Confidence 23334 48999999999999999999999999999999999999999999998887 66788888999999999999
Q ss_pred hhhHHHHHHHHHH
Q 042581 437 SGTTFSLKSLIHT 449 (459)
Q Consensus 437 ~~~~~~i~~l~~~ 449 (459)
+|++..+.++..+
T Consensus 396 ~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 396 IGVAVMIYDLLAK 408 (411)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988765
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=9.1e-33 Score=270.82 Aligned_cols=384 Identities=19% Similarity=0.189 Sum_probs=298.2
Q ss_pred CCCCCCchHHHHHHHHHhhhhhccchhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-CHHHHHHHHhc
Q 042581 55 NSHAGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSR-SYIDIGQHAFG 132 (459)
Q Consensus 55 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~y~~~~~~~~G 132 (459)
..+++.+..++++++.+++||+|+|++|++++..|+. +++++++.+.++.++.+++.|+..+.|+.+ ++.+++++.+|
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G 83 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLG 83 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhC
Confidence 4467888999999999999999999999999999998 999999999999999999999999999863 99999999999
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHH
Q 042581 133 RKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGI 212 (459)
Q Consensus 133 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 212 (459)
|+++++.++.+.+.+++.+.+|.+..++.+++.++......+ .++....++.+.++.++++.++...++..+.+..
T Consensus 84 ~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~----~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~ 159 (415)
T COG0814 84 KKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNP----LPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVF 159 (415)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCC----cchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 999999999999999999999999999999999876321110 2467777888888888999999999999999998
Q ss_pred HHHHHHHHHhhhhhhccCcccCCCC--C-cccCCchhhHHHHHhhhcccceeccchhhhccCCc-c-chhHHHHHHHHHH
Q 042581 213 LMSVLIFLSVAFTAIFGGVKANHRI--P-VLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPS-K-FTKVSIVSFTLVT 287 (459)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~-~-~~~~~~~~~~~~~ 287 (459)
..+...++...+.....+.+.-... . ...+..+..++|+++|||.||+++|++.+|||+++ | .+|+..++..+..
T Consensus 160 ~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~ 239 (415)
T COG0814 160 GKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIAL 239 (415)
T ss_pred HHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 8887777776666554322211111 1 35667889999999999999999999999999876 4 9999999999999
Q ss_pred HHHHHHHHHHHhhcCCCChhhHhhcCCCchhHH-------------HHHHHHHHHHhhhhccchhhhhHHHHHhhCCCCc
Q 042581 288 ALNTALGFMGTKLFGPGVNSQITLSMPQHLVVT-------------KIALWATVLTPMTKYALEFAPLAIQLENHLPISL 354 (459)
Q Consensus 288 ~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~-------------~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~ 354 (459)
++|..+++++|..+|+++.++++.+.++++... ...+++..+.+.++|--......+..++.+.+++
T Consensus 240 vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~ 319 (415)
T COG0814 240 VLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSN 319 (415)
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhcc
Confidence 999999999999999999999999997654332 2223344444444433333444444555444311
Q ss_pred --cchhhHHH--HHHHHHHHHHHHHHHHHhCchHHHHHHHhhhHhHhHHHHhhhhHHHHHhcCCCcchhHHHHHHHHHhh
Q 042581 355 --SARSKMMI--RSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVSICICLIFPCAFYIKISWPHISQRLLILNVTLIGF 430 (459)
Q Consensus 355 --~~~~~~~~--~~~~~~~~~~~~~~ia~~~~~~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~ 430 (459)
.+|.+... ......+.+......+...+..+.+.+.+|+.....+.+..|...+.+....+..+.++...++++++
T Consensus 320 ~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~ 399 (415)
T COG0814 320 SKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLF 399 (415)
T ss_pred CcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHH
Confidence 11222211 12234455555566667778888888888888888888888988887766655444433577888899
Q ss_pred hhhhhhhhhHHH
Q 042581 431 GFLLGFSGTTFS 442 (459)
Q Consensus 431 g~~~~v~~~~~~ 442 (459)
|++.+....+..
T Consensus 400 Gi~~~~~~~~~~ 411 (415)
T COG0814 400 GILVILSPFLAT 411 (415)
T ss_pred HHHHHHHHHHHH
Confidence 988888766654
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.96 E-value=2e-26 Score=224.64 Aligned_cols=365 Identities=18% Similarity=0.197 Sum_probs=265.3
Q ss_pred CCCchHHHHHHHHHhhhhhccchhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchhhH
Q 042581 58 AGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGR 136 (459)
Q Consensus 58 ~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~ 136 (459)
++.+.+++++.+.+++||+|+|++|.+.+..|.. +.+++++.+.++.+++.++.|...+.++..++.+++++.+||+++
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~ 80 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGG 80 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHH
Confidence 3567889999999999999999999999999988 999999999999999999999999888889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCcc-CccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHH
Q 042581 137 AAAATFIYLEIFMALVSYTILLHDNLITVFSGTSL-DLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMS 215 (459)
Q Consensus 137 ~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 215 (459)
++..+.+.+..+..+.+|....++.+.++++.... +. +++....+..++...+... +-+.....+..-+...
T Consensus 81 ~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~------~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~ 153 (394)
T PF03222_consen 81 IVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDL------SPWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGM 153 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCC------cHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999876532 11 1222222222222222222 3334444444433333
Q ss_pred HHHHHHhhhhhhccCcccC----CCCCcccCCchhhHHHHHhhhcccceeccchhhhcc-CCccchhHHHHHHHHHHHHH
Q 042581 216 VLIFLSVAFTAIFGGVKAN----HRIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMK-DPSKFTKVSIVSFTLVTALN 290 (459)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k-~p~~~~~~~~~~~~~~~~~Y 290 (459)
+..++....... .+.+.+ .+....++...+.++|++++||..|+.+|++.+.++ |++|.+|++.++..+..++|
T Consensus 154 i~~~~~l~~~~~-p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~y 232 (394)
T PF03222_consen 154 IISFIILVVYLI-PHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMY 232 (394)
T ss_pred HHHHHHHHHHHh-hhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 333333322222 112111 122345677889999999999999999999999999 56689999999999999999
Q ss_pred HHHHHHHHhhc-----------CCCChh--hHhhcCCCchhHHHHHHHHHHHHhhhhccchhhhhHHHHHhhCCCCccch
Q 042581 291 TALGFMGTKLF-----------GPGVNS--QITLSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPISLSAR 357 (459)
Q Consensus 291 ~~~g~~gy~~f-----------g~~~~~--~il~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~ 357 (459)
++.-......- +++..+ ..+.+..++.+...+..++..+.+.+||--....++|.+.+.++.+++.
T Consensus 233 l~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~~~~- 311 (394)
T PF03222_consen 233 LLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLKNNS- 311 (394)
T ss_pred HHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc-
Confidence 98654443322 111111 2333444456677778999999999999999999999999998773332
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhCch-HHHHHHHhhhHhHhHHHHhhhhHHHHHhcCCCcch-h----HHHHHHHHHhhh
Q 042581 358 SKMMIRSSVGSLLLIIILTLALSLPY-FQYVLSLTGSLVSICICLIFPCAFYIKISWPHISQ-R----LLILNVTLIGFG 431 (459)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~ia~~~~~-~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~~~~~~-~----~~~~~~~~~~~g 431 (459)
.+|.. ........+.++|...|+ +...+++.| .....+..++|+++.+|.|+++... + .+.....++++|
T Consensus 312 ~~r~~---~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~~gg~~~l~~~~~~~ 387 (394)
T PF03222_consen 312 SGRLK---TWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRVPGGNFTLLLVIIFG 387 (394)
T ss_pred cchHH---HHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEEeCcHHHHHHHHHHH
Confidence 23333 334455557788888886 889999999 9999999999999999998775432 1 234444455555
Q ss_pred hhhh
Q 042581 432 FLLG 435 (459)
Q Consensus 432 ~~~~ 435 (459)
+...
T Consensus 388 i~ii 391 (394)
T PF03222_consen 388 ILII 391 (394)
T ss_pred HHHH
Confidence 4443
No 10
>PRK10483 tryptophan permease; Provisional
Probab=99.96 E-value=3.7e-26 Score=220.19 Aligned_cols=369 Identities=15% Similarity=0.111 Sum_probs=268.9
Q ss_pred CCCCCCchHHHHHHHHHhhhhhccchhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhch
Q 042581 55 NSHAGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGR 133 (459)
Q Consensus 55 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~ 133 (459)
.++++.+..++.+++.+++||+|+|++|.+.+..|+. +.+++++++.++.|++.++.|...+.++..++..++|+.+||
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG~ 85 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGK 85 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcCh
Confidence 3567889999999999999999999999999999998 999999999999999999999999888878999999999999
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHH
Q 042581 134 KGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGIL 213 (459)
Q Consensus 134 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 213 (459)
+++.+.++++.+..+..+.+|+...++.+++.+++.+.+. +++.-.++..++.-.+.+. ..+...+.+.+-+.
T Consensus 86 ~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i------~~~~~~llF~~~~~~iv~~-gt~~vd~~n~~l~~ 158 (414)
T PRK10483 86 GWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNV------PARAAGFGFALLVAFVVWL-STKAVSRMTAIVLG 158 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCC------cHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999987532222 1233233333333333332 44666666655444
Q ss_pred HHHHHHHHhhhhhhccCcccC--CC---CCcccCCchhhHHHHHhhhcccceeccchhhhccC-CccchhHHHHHHHHHH
Q 042581 214 MSVLIFLSVAFTAIFGGVKAN--HR---IPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKD-PSKFTKVSIVSFTLVT 287 (459)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~-p~~~~~~~~~~~~~~~ 287 (459)
..+..++..+.... .+.+.+ .+ ....++..++.++|++++||..|+++|++.+.+++ ++|.+|++.++..+..
T Consensus 159 ~~i~~f~~~~~~l~-~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Ipl 237 (414)
T PRK10483 159 AKVITFFLTFGSLL-GHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMAL 237 (414)
T ss_pred HHHHHHHHHHHHHH-hhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHH
Confidence 44433333333222 222211 11 11122345789999999999999999999999885 5689999999999999
Q ss_pred HHHHHHHHHHHhhcC-----------CCChhhHhh---cCCCchhHHHHHHHHHHHHhhhhccchhhhhHHHHHhhCCCC
Q 042581 288 ALNTALGFMGTKLFG-----------PGVNSQITL---SMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPIS 353 (459)
Q Consensus 288 ~~Y~~~g~~gy~~fg-----------~~~~~~il~---~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~ 353 (459)
++|++.-.......+ ++. +..+. +..++.....+..++..+.+.+||--....+.|.+.+.++.+
T Consensus 238 v~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~ 316 (414)
T PRK10483 238 ALYTIWLLATMGNIPRPEFIGIAEKGGNI-DVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFD 316 (414)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999986655554433 222 11112 222334566677888899999999999999999999988766
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhCch-HHHHHHHhhhHhHhHHHHhhhhHHHHHhcCC-Ccchh----HHHHHHHH
Q 042581 354 LSARSKMMIRSSVGSLLLIIILTLALSLPY-FQYVLSLTGSLVSICICLIFPCAFYIKISWP-HISQR----LLILNVTL 427 (459)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~-~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~~-~~~~~----~~~~~~~~ 427 (459)
++.+ +|.. .......++.+++...|+ |-..+++.|.. ..++..++|+++.++.||+ ..+.+ .+..-.++
T Consensus 317 ~~~~-~r~~---~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~Gg~~~l~~~ 391 (414)
T PRK10483 317 DSAM-GRFK---TALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKRFGSPKFRVWGGKPMIVLI 391 (414)
T ss_pred Cccc-ccee---eehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCceecCCHHHHHHH
Confidence 5422 2222 334566677889999987 88999999966 6677789999999999976 22222 23333455
Q ss_pred Hhhhhhhhhh
Q 042581 428 IGFGFLLGFS 437 (459)
Q Consensus 428 ~~~g~~~~v~ 437 (459)
+++|+...+.
T Consensus 392 ~~~g~~~i~~ 401 (414)
T PRK10483 392 LLFGVGNALV 401 (414)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.95 E-value=1.3e-25 Score=216.18 Aligned_cols=367 Identities=17% Similarity=0.129 Sum_probs=263.8
Q ss_pred CCCchHHHHHHHHHhhhhhccchhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchhhH
Q 042581 58 AGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGR 136 (459)
Q Consensus 58 ~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~ 136 (459)
+|.+...+.+++.+++||+|+|++|.+.++.|+. +.+++++++.++.|++.++.|+..+.++..++..++|+.+||+|+
T Consensus 7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~ 86 (415)
T PRK09664 7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWN 86 (415)
T ss_pred hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHH
Confidence 3447888999999999999999999999999998 999999999999999999999999998889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-ccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHH
Q 042581 137 AAAATFIYLEIFMALVSYTILLHDNLITVFSGT-SLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMS 215 (459)
Q Consensus 137 ~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 215 (459)
.+.++.+.+..+..+.+|+...++.+++.++.. +.+. +.+...++..++.-++.+. ..+...+.+.+-+...
T Consensus 87 ~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i------~~~~~~llF~~~~~~~v~~-gt~~vd~~nr~l~~~~ 159 (415)
T PRK09664 87 IISGITVAFVLYILTYAYISANGAIISETISMNLGYHA------NPRIVGICTAIFVASVLWI-SSLAASRITSLFLGLK 159 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCC------cHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHH
Confidence 999999999999999999999999999998652 1111 1233333444444444333 3455555555544333
Q ss_pred HHHHHHhhhhhhccCcccC--CCCCccc-----CCchhhHHHHHhhhcccceeccchhhhccC-CccchhHHHHHHHHHH
Q 042581 216 VLIFLSVAFTAIFGGVKAN--HRIPVLN-----LHKIPHISGLYIFSYAGHIVFPNLYKAMKD-PSKFTKVSIVSFTLVT 287 (459)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~-p~~~~~~~~~~~~~~~ 287 (459)
+..++..+... ..+.+.+ .+.+..+ +..++.++|++++||..|+++|++.+.+++ ++|.+|++.++..+..
T Consensus 160 ii~f~~~~~~l-~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpL 238 (415)
T PRK09664 160 IISFVIVFGSF-FFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLAL 238 (415)
T ss_pred HHHHHHHHHHH-hhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 33333222222 2222111 1111111 224788999999999999999999999985 4689999999999999
Q ss_pred HHHHHHHHHHHh-----------hcCCCChhhHhh--cCCCchhHHHHHHHHHHHHhhhhccchhhhhHHHHHhhCCCCc
Q 042581 288 ALNTALGFMGTK-----------LFGPGVNSQITL--SMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPISL 354 (459)
Q Consensus 288 ~~Y~~~g~~gy~-----------~fg~~~~~~il~--~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~ 354 (459)
++|++.-.+... ..|+++++-+.. .-.++.+...+..++..+.+.+||--....+.|.+.+.++.++
T Consensus 239 viY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~ 318 (415)
T PRK09664 239 VIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDN 318 (415)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999765333222 233333332221 1133456666788888999999999999999999999887665
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhCch-HHHHHHHhhhHhHhHHHHhhhhHHHHHhcCC-Ccc----hhHHHHHHHHH
Q 042581 355 SARSKMMIRSSVGSLLLIIILTLALSLPY-FQYVLSLTGSLVSICICLIFPCAFYIKISWP-HIS----QRLLILNVTLI 428 (459)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~ia~~~~~-~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~~-~~~----~~~~~~~~~~~ 428 (459)
+.+ .|.. .......++.+++...|+ |-..+++.|.. ..++..++|+++.+|.|++ ... ...+..-...+
T Consensus 319 ~~~-~r~~---~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~ 393 (415)
T PRK09664 319 SHG-GRFK---TVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVI 393 (415)
T ss_pred ccc-ccee---eehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCceeeCCHHHHHHHH
Confidence 432 2222 234566677889999887 88999999986 6678889999999999976 211 12344455556
Q ss_pred hhhhhhhhh
Q 042581 429 GFGFLLGFS 437 (459)
Q Consensus 429 ~~g~~~~v~ 437 (459)
.+|++..+.
T Consensus 394 ~~g~~ii~~ 402 (415)
T PRK09664 394 LFGITVILC 402 (415)
T ss_pred HHHHHHHHH
Confidence 666655544
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.95 E-value=2.3e-25 Score=215.91 Aligned_cols=364 Identities=15% Similarity=0.113 Sum_probs=261.4
Q ss_pred chHHHHHHHHHhhhhhccchhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchhhHhHH
Q 042581 61 SFAHAVINMAGMLIGLGQLSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGRAAA 139 (459)
Q Consensus 61 s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~~ 139 (459)
+...+.+.+.++.||+|+|++|.+.+..|.. +.+++++++.++.|+++.+.|+..+.++..++.+++|+.+||+++++.
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i~ 83 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLT 83 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHHHH
Confidence 6788999999999999999999999999988 999999999999999999999888877778999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCCc-cCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHH
Q 042581 140 ATFIYLEIFMALVSYTILLHDNLITVFSGTS-LDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMSVLI 218 (459)
Q Consensus 140 ~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 218 (459)
.+.+.+..+..+.+|....++.+.+.+++.- .+. ...+. .++..++.... ...+.+...+.+..-+...+..
T Consensus 84 ~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i-----~~~~~-~l~F~~~~~~i-v~~g~~~v~~~n~~L~~~~ii~ 156 (403)
T PRK15132 84 GFSMMFLMYALTAAYISGAGELLASSISDWTGISM-----SPTAG-VLLFTLVAGGV-VCVGTSSVDLFNRFLFSAKIIF 156 (403)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCC-----ChHHH-HHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888887765421 111 11222 22222221112 2223344554444433332222
Q ss_pred HHHhhhhhhccCcccCCCC-CcccCCchhhHHHHHhhhcccceeccchhhhccC-CccchhHHHHHHHHHHHHHHHHHHH
Q 042581 219 FLSVAFTAIFGGVKANHRI-PVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKD-PSKFTKVSIVSFTLVTALNTALGFM 296 (459)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~-p~~~~~~~~~~~~~~~~~Y~~~g~~ 296 (459)
++....... .+.+.+.-. ...+...++.++|++++||..|+++|++.+.+++ ++|.+|++.++..+..++|+..-..
T Consensus 157 ~~~~~~~l~-p~~~~~~L~~~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~ 235 (403)
T PRK15132 157 LVVMLALMM-PHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLA 235 (403)
T ss_pred HHHHHHHHH-HhcCHHHHhcCCccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222211 122111100 0112224889999999999999999999999985 4689999999999999999988777
Q ss_pred HHhhcCCCCh----------hhHhhcC---CCchhHHHHHHHHHHHHhhhhccchhhhhHHHHHhhCCCCccchhhHHHH
Q 042581 297 GTKLFGPGVN----------SQITLSM---PQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPISLSARSKMMIR 363 (459)
Q Consensus 297 gy~~fg~~~~----------~~il~~~---~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (459)
....-+.+.- ++.+..+ .++++...+...+..+.+.+||--....+.|.+.+.+.++.+.+. |..
T Consensus 236 ~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~~~~-r~~- 313 (403)
T PRK15132 236 TLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNTVGG-RLQ- 313 (403)
T ss_pred HHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccC-Cch-
Confidence 7766553311 1222222 234566677888888999999999999999999998865443222 222
Q ss_pred HHHHHHHHHHHHHHHHhCch-HHHHHHHhhhHhHhHHHHhhhhHHHHHhcCCC-cchh----HHHHHHHHHhhhhhhhhh
Q 042581 364 SSVGSLLLIIILTLALSLPY-FQYVLSLTGSLVSICICLIFPCAFYIKISWPH-ISQR----LLILNVTLIGFGFLLGFS 437 (459)
Q Consensus 364 ~~~~~~~~~~~~~ia~~~~~-~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~~~-~~~~----~~~~~~~~~~~g~~~~v~ 437 (459)
...+..+.+.+++...|+ +....++.|. ....+.+++|+++.+|.|+++ ..++ .+...++++++|++..+.
T Consensus 314 --~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~ 390 (403)
T PRK15132 314 --TGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGI 390 (403)
T ss_pred --hehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHH
Confidence 456677778889998887 7889999986 578888999999999998764 1121 456677777777766654
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.95 E-value=6.1e-26 Score=223.30 Aligned_cols=337 Identities=16% Similarity=0.112 Sum_probs=252.6
Q ss_pred HHHHHHhhhhhccchhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchhhHhHHHHHHH
Q 042581 66 VINMAGMLIGLGQLSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGRAAAATFIY 144 (459)
Q Consensus 66 ~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~~~ 144 (459)
+..++++++|+|++++|..++..|+. +++.+++.++++.++...+.|+..+.|+..++.+++++.+||+++++.++.++
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 45678999999999999999999887 88889999999999999999999999977999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCcc-CccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHhh
Q 042581 145 LEIFMALVSYTILLHDNLITVFSGTSL-DLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMSVLIFLSVA 223 (459)
Q Consensus 145 ~~~~g~~~~y~i~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~ 223 (459)
+.++..+.+|.+..++++..+++.... .. +.+...++..+++.++ ..++.+...+++.+.+...+..++.++
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~v~~~l-~~~G~~~~~~v~~i~~~~~l~~l~~~i 155 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEYFGFPW------SARAIVLIFTVLFGSF-VWLSTSAVDRITRVLIFGKIIAFALVF 155 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhcCCCc------cHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999888764221 11 2233333333333333 345778888888877666665554444
Q ss_pred hhhhcc-CcccCCCCC--cccCCchhhHHHHHhhhcccceeccchhhhcc-CCccchhHHHHHHHHHHHHHHHHHHHHHh
Q 042581 224 FTAIFG-GVKANHRIP--VLNLHKIPHISGLYIFSYAGHIVFPNLYKAMK-DPSKFTKVSIVSFTLVTALNTALGFMGTK 299 (459)
Q Consensus 224 ~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k-~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~ 299 (459)
.....+ +.+...+.. ..++.++..+++..+++|.+|++++.+.+|++ ++||.+|++.++..+++++|+++......
T Consensus 156 i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g 235 (381)
T TIGR00837 156 SGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMG 235 (381)
T ss_pred HHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 433322 111111111 12455778899999999998889999999997 54579999999999999999998877776
Q ss_pred hcCCCChhhHh-------------hcCCCchhHHHHHHHHHHHHhhhhccchhhhhHHHHHhhCCCCccchhhHHHHHHH
Q 042581 300 LFGPGVNSQIT-------------LSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPISLSARSKMMIRSSV 366 (459)
Q Consensus 300 ~fg~~~~~~il-------------~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (459)
..+.+.-.+.. .+.-++.+...+...+..+.+.+++.-...+.+|.+.+.++++.+++ ++.. .
T Consensus 236 ~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~~-~~~~---~ 311 (381)
T TIGR00837 236 NLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSKK-GRFK---T 311 (381)
T ss_pred CCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC-CCch---h
Confidence 66543221111 11112234556677888888899999999999999888877644322 2332 4
Q ss_pred HHHHHHHHHHHHHhCchHH-HHHHHhhhHhHhHHHHhhhhHHHHHhcCC
Q 042581 367 GSLLLIIILTLALSLPYFQ-YVLSLTGSLVSICICLIFPCAFYIKISWP 414 (459)
Q Consensus 367 ~~~~~~~~~~ia~~~~~~~-~~~~~~Ga~~~~~~~~ilP~l~~l~~~~~ 414 (459)
..+...++.++|...|+.. ..++.+| +.+.++.+++|++++++.|++
T Consensus 312 ~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 312 GLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred hhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 5666677788898898755 8999999 888999999999999998775
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.92 E-value=4.4e-22 Score=191.79 Aligned_cols=370 Identities=12% Similarity=0.118 Sum_probs=260.8
Q ss_pred HHHHHHHHHhhhhhccchhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhC-CCCCCHHHHHHHHhchhhHhHHH
Q 042581 63 AHAVINMAGMLIGLGQLSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKN-PKSRSYIDIGQHAFGRKGRAAAA 140 (459)
Q Consensus 63 ~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~y~~~~~~~~G~~~~~~~~ 140 (459)
..-...+.++.||+|+|++|......|.. .++++++.+.++.++.+.+.|...+. ++..++.+++++.+||+++.+.+
T Consensus 22 ~~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ 101 (443)
T PRK13629 22 TTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVIT 101 (443)
T ss_pred chHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHH
Confidence 34458999999999999999999999987 99999999999999999999987776 55689999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCC-cc-CccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHH
Q 042581 141 TFIYLEIFMALVSYTILLHDNLITVFSGT-SL-DLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMSVLI 218 (459)
Q Consensus 141 ~~~~~~~~g~~~~y~i~~~~~l~~~~~~~-~~-~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 218 (459)
+++.+..+..+.+|...+.+.+.+.+.+. +. +. ++.+..++..++....... +-+...+++..-+...+..
T Consensus 102 ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~------~r~l~slifv~~l~~iv~~-G~~~v~kv~~~Lv~~~i~~ 174 (443)
T PRK13629 102 FLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPL------NRGFVALFLLLLMAFVIWF-GKDLMVKVMSYLVWPFIAS 174 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCc------cHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888887754322 11 11 2334444444443333332 3344444444433333332
Q ss_pred HHHhhhhhhc-cCcccCCCCC-----cc-cC---CchhhHHHHHhhhcccceeccchhhh----cc-----C--Cccchh
Q 042581 219 FLSVAFTAIF-GGVKANHRIP-----VL-NL---HKIPHISGLYIFSYAGHIVFPNLYKA----MK-----D--PSKFTK 277 (459)
Q Consensus 219 ~~~~~~~~~~-~~~~~~~~~~-----~~-~~---~~~~~~~~~~~fsf~~~~~i~~i~~e----~k-----~--p~~~~~ 277 (459)
++....+.+. -+.+.-...+ .. +. ..++.++|++++||..|+++|++... .+ | ++|.+|
T Consensus 175 l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~r 254 (443)
T PRK13629 175 LVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQ 254 (443)
T ss_pred HHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHH
Confidence 3222222221 1111101011 11 11 24788999999999999999999998 53 3 456889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCC-------hhhHh----hcCCCc--------hhHHHHHHHHHHHHhhhhccch
Q 042581 278 VSIVSFTLVTALNTALGFMGTKLFGPGV-------NSQIT----LSMPQH--------LVVTKIALWATVLTPMTKYALE 338 (459)
Q Consensus 278 ~~~~~~~~~~~~Y~~~g~~gy~~fg~~~-------~~~il----~~~~~~--------~~~~~i~~~~~~~~~~~s~p~~ 338 (459)
++.++..+..++|+..-+.+...-+++. +.+++ +.+++. +....+..++..+.+.+||--.
T Consensus 255 ii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv 334 (443)
T PRK13629 255 IISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGH 334 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888887776432 11211 122321 3455667778888999999999
Q ss_pred hhhhHHHHHhhCC-----CCccchhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHhhhHhHhHHHHhhhhHHHHHhcC
Q 042581 339 FAPLAIQLENHLP-----ISLSARSKMMIRSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVSICICLIFPCAFYIKISW 413 (459)
Q Consensus 339 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~ 413 (459)
...++|.+...+. .+.++..++..+.....++...++.++..-|++-.++...|+-....+.|++|....+|...
T Consensus 335 ~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~ 414 (443)
T PRK13629 335 YLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPS 414 (443)
T ss_pred HHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHH
Confidence 9999999998772 11222344555556777788888888888899999999888888888889999999888665
Q ss_pred CCcchhHHHHHHHHHhhhhhhhhhhhH
Q 042581 414 PHISQRLLILNVTLIGFGFLLGFSGTT 440 (459)
Q Consensus 414 ~~~~~~~~~~~~~~~~~g~~~~v~~~~ 440 (459)
-++.| .+..++++++.|++......|
T Consensus 415 l~~yr-~~~~n~fv~~~Gl~~i~~~~~ 440 (443)
T PRK13629 415 LAKYR-GRLDNVFVTVIGLLTILNIVY 440 (443)
T ss_pred HHHhC-CCchhHHHHHHHHHHHHHHHH
Confidence 43333 233578888888877665544
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.90 E-value=2.4e-21 Score=188.49 Aligned_cols=364 Identities=12% Similarity=0.110 Sum_probs=255.7
Q ss_pred hHHHHHHHHHhhhhhccchhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCC-CCCHHHHHHHHhchhhHhHH
Q 042581 62 FAHAVINMAGMLIGLGQLSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPK-SRSYIDIGQHAFGRKGRAAA 139 (459)
Q Consensus 62 ~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~y~~~~~~~~G~~~~~~~ 139 (459)
...-.+.+.++++|+|+|++|...++.||. .++..++...++.++..++.|.....+. ..++.|++++.|||+++.+.
T Consensus 5 d~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii 84 (397)
T TIGR00814 5 DTGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILI 84 (397)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHH
Confidence 445688999999999999999999999998 6666777777888888888887444333 48999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccCCc-cCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHH
Q 042581 140 ATFIYLEIFMALVSYTILLHDNLITVFSGTS-LDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMSVLI 218 (459)
Q Consensus 140 ~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 218 (459)
++.+++..+..+.+|....++.+.+++...- .+. ..+++..+..++++......+.+.+.+++.+-+...+..
T Consensus 85 ~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~------p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~ 158 (397)
T TIGR00814 85 TLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAP------PLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLI 158 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------cHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888888877765421 111 123333333333323333446677777766665444443
Q ss_pred HHHhhhhhhcc-CcccCCCCCc--ccCCchhhHHHHHhhhcccceeccchh----hhccCC----ccchhHHHHHHHHHH
Q 042581 219 FLSVAFTAIFG-GVKANHRIPV--LNLHKIPHISGLYIFSYAGHIVFPNLY----KAMKDP----SKFTKVSIVSFTLVT 287 (459)
Q Consensus 219 ~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~fsf~~~~~i~~i~----~e~k~p----~~~~~~~~~~~~~~~ 287 (459)
++.+......+ +.+.-...+. ..+.++..+++++++||.+|+++|+.. +|.+|| +|.+|+..++..+..
T Consensus 159 l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~ 238 (397)
T TIGR00814 159 LVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILV 238 (397)
T ss_pred HHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHH
Confidence 33333333321 1111111111 234568899999999999999999998 444433 468899999999999
Q ss_pred HHHHHHHHHHHhhcCCCChhh-------Hhh---cCCCchhHHHHHHHHHHHHhhhhccchhhhhHHHHHhhCC----CC
Q 042581 288 ALNTALGFMGTKLFGPGVNSQ-------ITL---SMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLP----IS 353 (459)
Q Consensus 288 ~~Y~~~g~~gy~~fg~~~~~~-------il~---~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~----~~ 353 (459)
++|+..-+.+....+++.-.. .+. +-.+.+....+...+..+.+.+||--....++|.+.+.+. .+
T Consensus 239 ~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~ 318 (397)
T TIGR00814 239 ATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMK 318 (397)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccc
Confidence 999999888888777543211 121 1123345666778888889999999999999999999772 11
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHhhhHhHhHHHHhhhhHHHHHhcCCCcchhHHHHHHHHHhhhh
Q 042581 354 LSARSKMMIRSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVSICICLIFPCAFYIKISWPHISQRLLILNVTLIGFGF 432 (459)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~g~ 432 (459)
.++..++..+.....++...+..++..-|++-.+++-.|+-....+.|++|....+|...-++.| .++.++++++.|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~~l~~~~-~~~~~~fv~~~g~ 396 (397)
T TIGR00814 319 GKKINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVPALKKYR-GRISNVFVTVIGL 396 (397)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccHHHHHhC-CCcchheeEeeec
Confidence 12233444555566777788888888889999999977777778888999999988865543222 2245777776665
No 16
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.83 E-value=8.6e-19 Score=169.16 Aligned_cols=352 Identities=15% Similarity=0.155 Sum_probs=231.9
Q ss_pred ccCCCCCCchHHHHHHHHHhhhhhccchhHHH-HhhhchH--HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 042581 53 ENNSHAGSSFAHAVINMAGMLIGLGQLSTPYA-IENGGWA--SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQH 129 (459)
Q Consensus 53 ~~~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~-~~~~G~~--g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~ 129 (459)
..+.+|+.+.+.++..+++++||+|++..|.. .+++|-+ +++.+++.|+++...++..+|.....|+.+.+-.+..+
T Consensus 7 ~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi~~ 86 (479)
T KOG1287|consen 7 EVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYISE 86 (479)
T ss_pred cccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHH
Confidence 34567899999999999999999999999955 5677755 66777889999999999999999888887777777778
Q ss_pred HhchhhHhHHHHHHHHHHHHHH-HHHHHHHHhh-hhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHH
Q 042581 130 AFGRKGRAAAATFIYLEIFMAL-VSYTILLHDN-LITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFL 207 (459)
Q Consensus 130 ~~G~~~~~~~~~~~~~~~~g~~-~~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~ 207 (459)
+||+..++...|.-++...... ..+.+.+++| +++.++..+. .+......+..++.+....|....++.
T Consensus 87 afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~---------p~~~~~lla~~~l~~lt~~n~~~V~~a 157 (479)
T KOG1287|consen 87 AFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDV---------PRVASKLLAAALLVLLTLINSFSVKWA 157 (479)
T ss_pred HhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCC---------chHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 9999999988888777666655 8888899998 7888773221 222222222222222222344444444
Q ss_pred H---HHHHHHHHHHHHHhhhhhhcc----Cccc---C-CCCCcccCCchhhHHHHHhhhcccceeccchhhhccCCcc-c
Q 042581 208 S---VGGILMSVLIFLSVAFTAIFG----GVKA---N-HRIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK-F 275 (459)
Q Consensus 208 s---~~~~~~~~~~~~~~~~~~~~~----~~~~---~-~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~-~ 275 (459)
+ .+..++-+..+..++..++.. ..++ + .+....+..++..++-...|||.|+..+..+.+|+|||+| +
T Consensus 158 ~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktL 237 (479)
T KOG1287|consen 158 TRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTL 237 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccc
Confidence 4 333444444444444333322 1111 1 1222344557888999999999999999999999999996 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHhhc------CCC---chhHHHHHHHHHHHHhhhhccchhhhhHHHH
Q 042581 276 TKVSIVSFTLVTALNTALGFMGTKLFGPGVNSQITLS------MPQ---HLVVTKIALWATVLTPMTKYALEFAPLAIQL 346 (459)
Q Consensus 276 ~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~------~~~---~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~ 346 (459)
|+++.+++.+++++|+++-+..+.+... +.++.+ +.+ +.+. .+..+...++.+-+.--.++...+.+
T Consensus 238 P~Ai~isi~lvt~iYil~NvAy~~vls~---~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~ 313 (479)
T KOG1287|consen 238 PRAILISIPLVTVIYVLVNVAYFTVLSP---DEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLF 313 (479)
T ss_pred hHHHHHhhHHHHHHHHHhHhheeEecCH---HHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 9999999999999999998876655432 233221 110 1122 33444445554444444444443333
Q ss_pred Hh-----hCCCCcc---chhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHhhhHhHhHHHHhhhhHHHHHhcCCCcch
Q 042581 347 EN-----HLPISLS---ARSKMMIRSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVSICICLIFPCAFYIKISWPHISQ 418 (459)
Q Consensus 347 ~~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~~~~~~ 418 (459)
.. ++|.... .+....+ ..+++.....++....+|++.++|..+-.......+.+=+++|+|.++++.+|
T Consensus 314 ~~~areG~LP~~~s~i~~~~~TP~---~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~r 390 (479)
T KOG1287|consen 314 YAGAREGHLPAFFSMISVRRFTPR---PALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPR 390 (479)
T ss_pred HHHHHccCccHHHHhhcCCCCCCh---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 32 3332111 1111122 44555556666666677999999999877777777888899999998887655
Q ss_pred hH
Q 042581 419 RL 420 (459)
Q Consensus 419 ~~ 420 (459)
.-
T Consensus 391 Pi 392 (479)
T KOG1287|consen 391 PI 392 (479)
T ss_pred CE
Confidence 43
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=99.83 E-value=3e-17 Score=164.60 Aligned_cols=237 Identities=14% Similarity=0.054 Sum_probs=163.4
Q ss_pred CCCCCchHHHHHHHHHhhhhhccchhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchhh
Q 042581 56 SHAGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKG 135 (459)
Q Consensus 56 ~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~~ 135 (459)
++|+.+.++.+...+++++|+|++.+|..+++.|..+++.+++.+++.......+.|.+.+.|+......+.++.+||+.
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~~~ 83 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGKSG 83 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCcch
Confidence 46889999999999999999999999988888887688888999999999999999999999988889999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHH-HHHHHHHhhcccCCCCChhHHHHHHHHH
Q 042581 136 RAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTV-IAVLIALPSLWLRDLSSISFLSVGGILM 214 (459)
Q Consensus 136 ~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 214 (459)
+++..+.+++.......++.....+++..+++..... ...+.+ +..+......-.+..+....++.+....
T Consensus 84 gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~--------~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~~~ 155 (438)
T PRK10655 84 NFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSP--------VQICLATIGVLWLCTVANFGGARITGQISSVTVWG 155 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch--------HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 9999999888776666666666667777666532111 111111 1111111112223444444444443333
Q ss_pred HHHHHHHhhhhhhc-cCccc-CCCCCcc---cCCchhhHHHHHhhhcccceeccchhhhccCCc-cchhHHHHHHHHHHH
Q 042581 215 SVLIFLSVAFTAIF-GGVKA-NHRIPVL---NLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPS-KFTKVSIVSFTLVTA 288 (459)
Q Consensus 215 ~~~~~~~~~~~~~~-~~~~~-~~~~~~~---~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~-~~~~~~~~~~~~~~~ 288 (459)
.+..++.++..... .+.+. .+..... .+.++..++....|+|.|.+.+....+|+|||+ +.+|++..+..++.+
T Consensus 156 ~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~ 235 (438)
T PRK10655 156 VIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAV 235 (438)
T ss_pred HHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHH
Confidence 32222222221111 11111 1111111 123456678889999999999999999999998 599999999999999
Q ss_pred HHHHHHHHHHhh
Q 042581 289 LNTALGFMGTKL 300 (459)
Q Consensus 289 ~Y~~~g~~gy~~ 300 (459)
+|++........
T Consensus 236 ~Y~l~~~~~~~~ 247 (438)
T PRK10655 236 IYIVSTNVIAGI 247 (438)
T ss_pred HHHHHHHHHHhC
Confidence 999876654433
No 18
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.83 E-value=2.6e-17 Score=164.54 Aligned_cols=239 Identities=14% Similarity=0.111 Sum_probs=165.5
Q ss_pred CCCCCCchHHHHHHHHHhhhhhccchhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchh
Q 042581 55 NSHAGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRK 134 (459)
Q Consensus 55 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~ 134 (459)
+++|+.+.++.+...++++||+|++.+|...++.|...++.+++.++.....+..+.|.+.+.|+.++..+++++ +||.
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~~ 80 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISPA 80 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCcH
Confidence 357899999999999999999999999998888887677778888888899999999999999998888888888 8999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHH
Q 042581 135 GRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILM 214 (459)
Q Consensus 135 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 214 (459)
.++.+.+.++........++.+...+++..+++....+. ...+..+..+..+.+.-.+..+....++.+..+.
T Consensus 81 ~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~-------~~~~~~~~i~~~~~~ln~~gvk~~~~i~~i~~~~ 153 (435)
T PRK10435 81 FGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPI-------PAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVL 153 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999988875555555666666677777765432111 1111111111112222233444444444444333
Q ss_pred HHHHHHHhhhhhhcc-Cccc---C-CCCCcccCCchhhHHHHHhhhcccceeccchhhhccCCc-cchhHHHHHHHHHHH
Q 042581 215 SVLIFLSVAFTAIFG-GVKA---N-HRIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPS-KFTKVSIVSFTLVTA 288 (459)
Q Consensus 215 ~~~~~~~~~~~~~~~-~~~~---~-~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~-~~~~~~~~~~~~~~~ 288 (459)
.+..++..+...... +.+. + .+....++.++..++...+|+|.|.+.+....+|+|||+ +.+|++..+..++.+
T Consensus 154 ~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~i 233 (435)
T PRK10435 154 VLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGI 233 (435)
T ss_pred HHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHH
Confidence 332222222111111 1110 0 111123345778889999999999999999999999997 599999999999999
Q ss_pred HHHHHHHHHHhhc
Q 042581 289 LNTALGFMGTKLF 301 (459)
Q Consensus 289 ~Y~~~g~~gy~~f 301 (459)
+|++..+......
T Consensus 234 lYil~~~~~~~~~ 246 (435)
T PRK10435 234 IYIAATQVISGMF 246 (435)
T ss_pred HHHHHHHHHHhcC
Confidence 9999887665444
No 19
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.82 E-value=3.7e-18 Score=162.10 Aligned_cols=348 Identities=15% Similarity=0.147 Sum_probs=241.0
Q ss_pred cCCCCCCchHHHHHHHHHhhhhhcc-chhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhc
Q 042581 54 NNSHAGSSFAHAVINMAGMLIGLGQ-LSTPYAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFG 132 (459)
Q Consensus 54 ~~~~~~~s~~~~~~~l~~~~iG~Gi-l~lP~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G 132 (459)
.+.+|+.+.++--++-+++.||+|. ++-..+.+.+|.--++..++.|++...-++.+.|...++|..+|+.+++++.+|
T Consensus 9 ~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG 88 (462)
T COG1113 9 QGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLG 88 (462)
T ss_pred hhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhc
Confidence 3467889999999999999999997 557788999998778888999999999999999999999999999999999999
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHH--HHhhcccCCCCChhHHHHH
Q 042581 133 RKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLI--ALPSLWLRDLSSISFLSVG 210 (459)
Q Consensus 133 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~pl~~~~~l~~l~~~s~~ 210 (459)
++.+++.+|.+++.....+.+.....+.+++.++++.+ .+.+.++..++ .+-+..+|...++-++-.+
T Consensus 89 ~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~vP----------~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAl 158 (462)
T COG1113 89 PWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDVP----------QWVFALAAVVLLLAVNLISVKVFGELEFWFAL 158 (462)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998873 23333333333 3334446666666655444
Q ss_pred HHHHHHHHHHHhhhhhhccCcccC------------CCCCcccCCchhhHHHHHhhhcccceeccchhhhccCCcc-chh
Q 042581 211 GILMSVLIFLSVAFTAIFGGVKAN------------HRIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK-FTK 277 (459)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~-~~~ 277 (459)
-.+..++.++++....+..+.+.+ ....+.++.++..++.+.+|||.+.|.+-...+|.|||+| .+|
T Consensus 159 IKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipk 238 (462)
T COG1113 159 IKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPK 238 (462)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHH
Confidence 433333333333333222211111 1122345667889999999999999999999999999996 788
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHhhcCCCChhhHhhcCC--CchhHHHHHHHHHHHHhhhhccchhhhhHHHHHhhC
Q 042581 278 VSIVSFTLVTALNTA-----LGFMGTKLFGPGVNSQITLSMP--QHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHL 350 (459)
Q Consensus 278 ~~~~~~~~~~~~Y~~-----~g~~gy~~fg~~~~~~il~~~~--~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~ 350 (459)
++.--..-..++|+. +.+.-+-.++++..+.+ ..+. +-+....+.+.......+.+..-.+|...+.+.+.-
T Consensus 239 Ain~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV-~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la 317 (462)
T COG1113 239 AINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFV-TVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLA 317 (462)
T ss_pred HHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHH-HHHHHcCCcccccceeEEEeechhhcccccccccchHHHHHh
Confidence 887777777777764 33333444444333322 2221 112333455555666666666666777777777764
Q ss_pred CCCcc-----c---hhhHHHHHHHHHHHHHHHHHHHHhCch--HHHHHHHhhhHhHhHHHHhhhhHHHHHhcCC
Q 042581 351 PISLS-----A---RSKMMIRSSVGSLLLIIILTLALSLPY--FQYVLSLTGSLVSICICLIFPCAFYIKISWP 414 (459)
Q Consensus 351 ~~~~~-----~---~~~~~~~~~~~~~~~~~~~~ia~~~~~--~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~~ 414 (459)
.+.+. + +.-.....+++.+...+..++....|. |+.+.+..+... ...+.+=.+.++|.||.
T Consensus 318 ~~g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~--l~vW~~I~~s~l~~rk~ 389 (462)
T COG1113 318 KQGDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGL--LFVWLMILLSQLKLRKA 389 (462)
T ss_pred hcCcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhc
Confidence 22221 1 111122345777778888888888883 555555544433 44455567888888773
No 20
>PRK11021 putative transporter; Provisional
Probab=99.81 E-value=1.4e-16 Score=158.24 Aligned_cols=226 Identities=18% Similarity=0.137 Sum_probs=155.6
Q ss_pred CchHHHHHHHHHhhhhhccchhH-HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchhhHhH
Q 042581 60 SSFAHAVINMAGMLIGLGQLSTP-YAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGRAA 138 (459)
Q Consensus 60 ~s~~~~~~~l~~~~iG~Gil~lP-~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~ 138 (459)
.+.++++...++++||+|++.+| .+.+.+|...++.+++.+++.......+.|.+.+.|+.++...++++.+||+.+++
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf~ 80 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGRV 80 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHHH
Confidence 36889999999999999999999 55667775578888899999999999999999999998999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHH
Q 042581 139 AATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMSVLI 218 (459)
Q Consensus 139 ~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 218 (459)
..+..+........+......+++..+++... + ..+...+.....+-+.-.++.+....++.+..+..+.
T Consensus 81 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~- 150 (410)
T PRK11021 81 TGWLFLSVIPVGLPAALQIAAGFGQALFGWSS--W-------QLLLAELLTLALLWLLNLRGASSSANLQTVIALLIVA- 150 (410)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCC--c-------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-
Confidence 99988865444444444455566666554321 1 1121111112222222233444444444433222221
Q ss_pred HHHhhhhhhccCcccC----CCCCcccCCchhhHHHHHhhhcccceeccchhhhccCCcc-chhHHHHHHHHHHHHHHHH
Q 042581 219 FLSVAFTAIFGGVKAN----HRIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK-FTKVSIVSFTLVTALNTAL 293 (459)
Q Consensus 219 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~-~~~~~~~~~~~~~~~Y~~~ 293 (459)
.+.......+.+.. .+....++.++..++...+|+|.|.+.+....+|+|||+| .+|++..+..++.++|++.
T Consensus 151 --i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~ 228 (410)
T PRK11021 151 --LVVAIWWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWAC 228 (410)
T ss_pred --HHHHHHHHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHH
Confidence 11111111111111 1111234556788899999999999999999999999985 9999999999999999998
Q ss_pred HHHH
Q 042581 294 GFMG 297 (459)
Q Consensus 294 g~~g 297 (459)
.+.-
T Consensus 229 ~~~~ 232 (410)
T PRK11021 229 TVVV 232 (410)
T ss_pred HHHH
Confidence 7653
No 21
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.81 E-value=6.2e-17 Score=162.53 Aligned_cols=240 Identities=12% Similarity=0.110 Sum_probs=161.5
Q ss_pred CCCCCCchHHHHHHHHHhhhhhccchhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchh
Q 042581 55 NSHAGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRK 134 (459)
Q Consensus 55 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~ 134 (459)
+++|+.+.++++...+++++|+|++.+|...++.|...+..+++.++.....+..+.|.+.+.|+.+...+.+++.+||.
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~g~~ 84 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCFGPF 84 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHcCch
Confidence 45689999999999999999999999998877777555666777788888888999999999998888888899999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHH
Q 042581 135 GRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILM 214 (459)
Q Consensus 135 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 214 (459)
.+++..+..++.......+......++...+++....++ ......+..+..+...-.+..+....++.+....
T Consensus 85 ~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i~~~~ 157 (445)
T PRK10644 85 LGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPL-------VLTITCVVVLWIFVLLNIVGPKMITRVQAVATVL 157 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcH-------HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 999999988876655555555555566665554322110 1111111111122222233445555555444333
Q ss_pred HHHHHHHhhhhhh--ccCcccCCCC---CcccCCchhhHHHHHhhhcccceeccchhhhccCCcc-chhHHHHHHHHHHH
Q 042581 215 SVLIFLSVAFTAI--FGGVKANHRI---PVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK-FTKVSIVSFTLVTA 288 (459)
Q Consensus 215 ~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~-~~~~~~~~~~~~~~ 288 (459)
.+..++.++.... .++....+.. ...++..+..++...+|+|.|.+.+....+|+|||+| .+|++..+..++.+
T Consensus 158 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v 237 (445)
T PRK10644 158 ALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAV 237 (445)
T ss_pred HHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHH
Confidence 3322222222111 1111101111 1122335556788899999999999999999999985 99999999999999
Q ss_pred HHHHHHHHHHhhc
Q 042581 289 LNTALGFMGTKLF 301 (459)
Q Consensus 289 ~Y~~~g~~gy~~f 301 (459)
+|++..+......
T Consensus 238 ~Y~l~~~~~~~~~ 250 (445)
T PRK10644 238 CYVLSSTAIMGMI 250 (445)
T ss_pred HHHHHHHHHHhCC
Confidence 9999887754443
No 22
>PRK10249 phenylalanine transporter; Provisional
Probab=99.81 E-value=1.3e-16 Score=160.39 Aligned_cols=345 Identities=14% Similarity=0.105 Sum_probs=207.8
Q ss_pred CCCCCCchHHHHHHHHHhhhhhccchhH-HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhch
Q 042581 55 NSHAGSSFAHAVINMAGMLIGLGQLSTP-YAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGR 133 (459)
Q Consensus 55 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP-~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~ 133 (459)
+.+|+.+.++..+..++++||+|++..| .+.+.+|...++.+++.+++....+..+.|.+.+.|..++..+++++.+|+
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~~g~ 97 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGP 97 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCh
Confidence 5678999999999999999999999988 667777866778888899999999999999999999989999999999999
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHH
Q 042581 134 KGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGIL 213 (459)
Q Consensus 134 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 213 (459)
..++++.+.+++.......+.....+.+++.+.++.+ ...+..+...+...+. .++.+..+.++....+
T Consensus 98 ~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~l~~~lN-~~gv~~~~~i~~~~~~ 166 (458)
T PRK10249 98 FAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVP----------TWIWAAAFFIIINAVN-LVNVRLYGETEFWFAL 166 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCc----------HHHHHHHHHHHHHHHH-HhcchhhhhHHHHHHH
Confidence 9999999999888777777777777777776654321 1222222222222222 3355555444433322
Q ss_pred HHH---HHHHHhhhhh-hccCc----ccCC-----CCCcccCCchhhHHHHHhhhcccceeccchhhhccCCcc-chhHH
Q 042581 214 MSV---LIFLSVAFTA-IFGGV----KANH-----RIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK-FTKVS 279 (459)
Q Consensus 214 ~~~---~~~~~~~~~~-~~~~~----~~~~-----~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~-~~~~~ 279 (459)
..+ ..++...... ...+. +.+. ...+.++.++..++....|+|.|.+.+....+|+|||+| .+|++
T Consensus 167 ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai 246 (458)
T PRK10249 167 IKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAV 246 (458)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHH
Confidence 211 1111111111 11110 0000 001134456788999999999999999999999999986 99999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCC----hhhHh---hcCCCchhHHHHHHHHHHHHhhhhccchhhhhHHHHHhh---
Q 042581 280 IVSFTLVTALNTALGFMGTKLFGPGV----NSQIT---LSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENH--- 349 (459)
Q Consensus 280 ~~~~~~~~~~Y~~~g~~gy~~fg~~~----~~~il---~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~--- 349 (459)
..+...+.++|++..+......+++. .++.. .+.. .+....+...+..+..+.+..-..+...+.+...
T Consensus 247 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ard 325 (458)
T PRK10249 247 NQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLD-SNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQ 325 (458)
T ss_pred HHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999876554443333211 01111 1111 1223333334444444444433334444443332
Q ss_pred --CCCCccc--hhhHHH-HHHHHHHHHHHHHHHHHhCc--hHHHHHHHhhhHhHhHHHHhhhhHHHHHhcC
Q 042581 350 --LPISLSA--RSKMMI-RSSVGSLLLIIILTLALSLP--YFQYVLSLTGSLVSICICLIFPCAFYIKISW 413 (459)
Q Consensus 350 --~~~~~~~--~~~~~~-~~~~~~~~~~~~~~ia~~~~--~~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~ 413 (459)
+|+...+ +.+... ..++...+..+..++....| .++.+.+..+ ....+.|++|++.+++.++
T Consensus 326 g~lP~~~~kv~~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~--~~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 326 GNAPKFLTRVSRRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVV--ATLLLNWIMICLAHLRFRA 394 (458)
T ss_pred CCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 2211000 111111 11233333322222322233 2444555433 3456889999999998774
No 23
>PRK15049 L-asparagine permease; Provisional
Probab=99.80 E-value=1.4e-16 Score=161.52 Aligned_cols=348 Identities=13% Similarity=0.099 Sum_probs=203.1
Q ss_pred CCCCCCchHHHHHHHHHhhhhhccchhH-HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhch
Q 042581 55 NSHAGSSFAHAVINMAGMLIGLGQLSTP-YAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGR 133 (459)
Q Consensus 55 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP-~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~ 133 (459)
+.+|+.+.++..+..++++||+|++..| .+++.+|..+++.+++.+++....+..+.|.+.+.|..++...++++.+||
T Consensus 25 ~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~G~ 104 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFLGE 104 (499)
T ss_pred hhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCc
Confidence 3678899999999999999999999988 578888876777888899999999999999999999989999999999999
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHH
Q 042581 134 KGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGIL 213 (459)
Q Consensus 134 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 213 (459)
+.++++.+..++.............+.+...+ +..+. . ....+..+..++...+. .++.+....++....+
T Consensus 105 ~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~~~-~------~~~~~~~~~~~l~~~iN-~~gvk~~~~i~~~~~~ 175 (499)
T PRK15049 105 KAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GAFGG-V------PQWVFALAALTIVGTMN-MIGVKWFAEMEFWFAL 175 (499)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCC-C------cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 99999999998876555555554555554432 11111 1 12222222222222222 2244444444443322
Q ss_pred HHHHHHHH---hhhhhhccCccc-CCC-----------CCcccCCchhhHHHHHhhhcccceeccchhhhccCCcc-chh
Q 042581 214 MSVLIFLS---VAFTAIFGGVKA-NHR-----------IPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK-FTK 277 (459)
Q Consensus 214 ~~~~~~~~---~~~~~~~~~~~~-~~~-----------~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~-~~~ 277 (459)
..+..++. +.......+.+. ... ..+.++..+..++...+|+|.|.+.+....+|+|||+| .+|
T Consensus 176 iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPr 255 (499)
T PRK15049 176 IKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPK 255 (499)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHH
Confidence 12111111 111111111100 000 00111122344566799999999999999999999986 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC-C---hhhHh---hcCCCchhHHHHHHHHHHHHhhhhccchhhhhHHHHHhh-
Q 042581 278 VSIVSFTLVTALNTALGFMGTKLFGPG-V---NSQIT---LSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENH- 349 (459)
Q Consensus 278 ~~~~~~~~~~~~Y~~~g~~gy~~fg~~-~---~~~il---~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~- 349 (459)
++..++..+.++|+..........+.+ . .++.. .... .++...+..++..+..+.+..-..+...+.+...
T Consensus 256 Ai~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g-~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~A 334 (499)
T PRK15049 256 AINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLG-VPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMA 334 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998766544443321 1 11111 1111 1223334445555555555544444455554433
Q ss_pred ----CCCCccc--hhhHHH-HHHHHHHHHHHHHHHHHhCc--hHHHHHHHhhhHhHhHHHHhhhhHHHHHhcCC
Q 042581 350 ----LPISLSA--RSKMMI-RSSVGSLLLIIILTLALSLP--YFQYVLSLTGSLVSICICLIFPCAFYIKISWP 414 (459)
Q Consensus 350 ----~~~~~~~--~~~~~~-~~~~~~~~~~~~~~ia~~~~--~~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~~ 414 (459)
+|+...+ +.+... ..++..++..+..++....| .++.++++.+ .+..+.|++|++.+++.|++
T Consensus 335 rdg~lP~~f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~--~~~li~y~~~~~~~l~~R~~ 406 (499)
T PRK15049 335 MGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFAS--LGIIASWAFIIVCQMRLRKA 406 (499)
T ss_pred hcCCcCHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence 2211110 111111 11222222222222222233 2555566543 45578889999999887753
No 24
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.79 E-value=1.3e-16 Score=161.10 Aligned_cols=350 Identities=14% Similarity=0.136 Sum_probs=206.2
Q ss_pred CCCchHHHHHHHHHhhhhhccchhHHH-HhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCC-CHHHHHHHHhchh
Q 042581 58 AGSSFAHAVINMAGMLIGLGQLSTPYA-IENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSR-SYIDIGQHAFGRK 134 (459)
Q Consensus 58 ~~~s~~~~~~~l~~~~iG~Gil~lP~~-~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~y~~~~~~~~G~~ 134 (459)
|+.+.++.+...++++||+|++.+|.. .+.+|.. .++.+++.++.....+..+.|.+.+.|+.. ...+++++.+||+
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~~ 80 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGPF 80 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCcH
Confidence 578999999999999999999999965 5566755 566788888888999999999999999754 7889999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHH
Q 042581 135 GRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILM 214 (459)
Q Consensus 135 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 214 (459)
.+++..+.+++.......++......++..+++...... ....+...+..+..+...-.+..+....++.+..+.
T Consensus 81 ~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~~~ 155 (468)
T TIGR03810 81 MGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGN-----NPPSIIGASVLLWCVHFLVLRGVEGAAFINTITTIA 155 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-----cHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 999999999887666667777766667666655432111 001111111122122222235555555555554433
Q ss_pred HHHHHHHhhh---hhhccCc-ccC--CCC--C--c-ccCCchhhHHHHHhhhcccceeccchhhhccCCccchhHHHHHH
Q 042581 215 SVLIFLSVAF---TAIFGGV-KAN--HRI--P--V-LNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSKFTKVSIVSF 283 (459)
Q Consensus 215 ~~~~~~~~~~---~~~~~~~-~~~--~~~--~--~-~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~~~~~~~~~~ 283 (459)
.+..++.++. .....+. ..+ .+. . . ..+.++..++....|+|.|.+.+....+|.||+|+.+|++..+.
T Consensus 156 ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~ai~~~~ 235 (468)
T TIGR03810 156 KLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGKATVIGL 235 (468)
T ss_pred HHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcccchHHHHHHH
Confidence 3322222221 1111111 000 000 0 0 11224556788899999999999999999999888999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC----h----hhHhhcCCCchhHHHHHHHHHHHHhhhhccchhhhhHHHHHh-----hC
Q 042581 284 TLVTALNTALGFMGTKLFGPGV----N----SQITLSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLEN-----HL 350 (459)
Q Consensus 284 ~~~~~~Y~~~g~~gy~~fg~~~----~----~~il~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~-----~~ 350 (459)
..+.++|++..+..+...+++. + .....+... ++...+..+...++.+.+..-.+....+.... .+
T Consensus 236 ~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g-~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~l 314 (468)
T TIGR03810 236 IGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVG-TWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLM 314 (468)
T ss_pred HHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 9999999998877665443211 1 111112211 23333444445555554444444433333332 22
Q ss_pred CCCccc--hhhHHHH-HHHHHHHHHHHHHHHHh-CchHHHHHHHhhhHhHhHHHHhhhhHHHHHhcCCC
Q 042581 351 PISLSA--RSKMMIR-SSVGSLLLIIILTLALS-LPYFQYVLSLTGSLVSICICLIFPCAFYIKISWPH 415 (459)
Q Consensus 351 ~~~~~~--~~~~~~~-~~~~~~~~~~~~~ia~~-~~~~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~~~ 415 (459)
|+...+ +.+...+ .++...+..+..++... .+.++.+.++.+. ...+.|+++++.+++.++|+
T Consensus 315 P~~f~k~~~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~--~~li~y~~~~~~~~~l~~~~ 381 (468)
T TIGR03810 315 PKYFGKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATS--AILVPYLWSAAYQVKLSWRG 381 (468)
T ss_pred cHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhc
Confidence 221110 1111111 11222222111111111 1345666665443 44678889999888886543
No 25
>PRK10746 putative transport protein YifK; Provisional
Probab=99.79 E-value=2.3e-16 Score=158.62 Aligned_cols=348 Identities=12% Similarity=0.044 Sum_probs=210.4
Q ss_pred CCCCCCchHHHHHHHHHhhhhhccchhH-HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhch
Q 042581 55 NSHAGSSFAHAVINMAGMLIGLGQLSTP-YAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGR 133 (459)
Q Consensus 55 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP-~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~ 133 (459)
+.+|+.+.++..+..++++||+|++..| .+.+.+|...++..++.+++....+..+.|.+.+.|+.+++.+++++.+||
T Consensus 7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~~~g~ 86 (461)
T PRK10746 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSP 86 (461)
T ss_pred HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhCc
Confidence 3568899999999999999999999988 667788875667778889999999999999999999989999999999999
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHH
Q 042581 134 KGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGIL 213 (459)
Q Consensus 134 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 213 (459)
+.++++.+.+++.......+.....+.+++.+++..+ ...+..+..++...+. .++.+....++.....
T Consensus 87 ~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~----------~~~~~~~~~~~~~~lN-~~gv~~~~~~e~~~~~ 155 (461)
T PRK10746 87 FFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMA----------QWIPALIAVALVALAN-LAAVRLYGEIEFWFAM 155 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCc----------hHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH
Confidence 9999999999998877778888888888887765421 1222222222222222 2233433333322211
Q ss_pred ----HHHHHHHHhhh---hhhccCcc---cC---CC--CCcccCCchhhHHHHHhhhcccceeccchhhhccCCcc-chh
Q 042581 214 ----MSVLIFLSVAF---TAIFGGVK---AN---HR--IPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK-FTK 277 (459)
Q Consensus 214 ----~~~~~~~~~~~---~~~~~~~~---~~---~~--~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~-~~~ 277 (459)
..+.++++.+. .....+.+ .+ ++ ....++.++..++...+|+|.|.+.+....+|+|||+| .||
T Consensus 156 ~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~ 235 (461)
T PRK10746 156 IKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRS 235 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHH
Confidence 11111111111 11111000 00 00 01123456778999999999999999999999999985 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCh----hhH---hhcCCCchhHHHHHHHHHHHHhhhhccchhhhhHHHHHhhC
Q 042581 278 VSIVSFTLVTALNTALGFMGTKLFGPGVN----SQI---TLSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHL 350 (459)
Q Consensus 278 ~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~----~~i---l~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~ 350 (459)
++..+...+.++|++..+......+.+.. ++. ..+... +....+...+..+..+.+..-.++...+.+...-
T Consensus 236 Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~-~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a 314 (461)
T PRK10746 236 AVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGI-TAAAGIINFVVLTAALSGCNSGMYSCGRMLYALA 314 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999865554444432211 111 111211 1222334444445555444444455555554432
Q ss_pred -----CCCccc--hhhHHH-HHHHHHHHHHHHHHHHHhCchHHHHHHHhhhH--hHhHHHHhhhhHHHHHhcCC
Q 042581 351 -----PISLSA--RSKMMI-RSSVGSLLLIIILTLALSLPYFQYVLSLTGSL--VSICICLIFPCAFYIKISWP 414 (459)
Q Consensus 351 -----~~~~~~--~~~~~~-~~~~~~~~~~~~~~ia~~~~~~~~~~~~~Ga~--~~~~~~~ilP~l~~l~~~~~ 414 (459)
|+...+ +.+... ..++......+...+....|+.+.+++..-+. ....+.|+++++.+++.|++
T Consensus 315 ~~g~lP~~~~~~~~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~ 388 (461)
T PRK10746 315 KNRQLPAAMAKVSRHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRA 388 (461)
T ss_pred hCCCcCHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 211000 111111 11222222222333333445545544444322 22467888888888888765
No 26
>TIGR00909 2A0306 amino acid transporter.
Probab=99.79 E-value=1.2e-16 Score=160.13 Aligned_cols=243 Identities=15% Similarity=0.137 Sum_probs=172.8
Q ss_pred CCCCchHHHHHHHHHhhhhhccchhHHH-HhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchhh
Q 042581 57 HAGSSFAHAVINMAGMLIGLGQLSTPYA-IENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKG 135 (459)
Q Consensus 57 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~-~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~~ 135 (459)
+|+.+.++.++..+++++|+|++.+|.. ....|...++.+++.+++....+..+.|...+.|+.++..+..++.+||+.
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~ 81 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGELT 81 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCcHH
Confidence 5789999999999999999999999955 445555466777778888888899999999999987888899999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCcccccc-----chhhHHHHHHHHHHHhhcccCCCCChhHHHHH
Q 042581 136 RAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKL-----STSQMLTVIAVLIALPSLWLRDLSSISFLSVG 210 (459)
Q Consensus 136 ~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 210 (459)
+++..+..++.....+..+....++++..+++....+.+++.. .....+..+...+++.....++.+...+++.+
T Consensus 82 g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~~~v 161 (429)
T TIGR00909 82 AFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKVNDI 161 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 9999999998888888888888889888877632111111000 00011122222333333334567777777766
Q ss_pred HHHHHHHHHHHhhhhhhcc-CcccCCCCCcccCCchhhHHHHHhhhcccceeccchhhhccCCc-cchhHHHHHHHHHHH
Q 042581 211 GILMSVLIFLSVAFTAIFG-GVKANHRIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPS-KFTKVSIVSFTLVTA 288 (459)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~-~~~~~~~~~~~~~~~ 288 (459)
.....+..++.++...... +.+.-.+....++.++..++...+|+|.|.+.+....+|+|||+ +.+|++..+..++.+
T Consensus 162 ~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~v 241 (429)
T TIGR00909 162 LVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVTL 241 (429)
T ss_pred HHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHHHH
Confidence 6554444443333222221 11111111223445678889999999999999999999999997 589999999999999
Q ss_pred HHHHHHHHHHh
Q 042581 289 LNTALGFMGTK 299 (459)
Q Consensus 289 ~Y~~~g~~gy~ 299 (459)
+|++.......
T Consensus 242 ~Yil~~~~~~~ 252 (429)
T TIGR00909 242 LYVLVAAVILG 252 (429)
T ss_pred HHHHHHHHHhc
Confidence 99988766554
No 27
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.78 E-value=3.7e-16 Score=157.33 Aligned_cols=237 Identities=16% Similarity=0.157 Sum_probs=168.1
Q ss_pred ccCCCCCCchHHHHHHHHHhhhhhccchhH-HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHh
Q 042581 53 ENNSHAGSSFAHAVINMAGMLIGLGQLSTP-YAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAF 131 (459)
Q Consensus 53 ~~~~~~~~s~~~~~~~l~~~~iG~Gil~lP-~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~ 131 (459)
+.+.+|+.+.++..+..++++||+|++.+| .+++.+|..+++.+++.+++....+..+.|.+.+.|+.++..+++++.+
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~~ 86 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDAI 86 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHh
Confidence 344679999999999999999999999999 6688888767788889999999999999999999998889999999999
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHH
Q 042581 132 GRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGG 211 (459)
Q Consensus 132 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 211 (459)
||+.+++..+.+++.....+.+.....+++++.++++.+ ...+.++...+...+. .+..+....++...
T Consensus 87 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~~~~~~~~~~~~n-~~gv~~~~~~~~~~ 155 (452)
T TIGR01773 87 GRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDIP----------LWLFSLILTIVLTLTN-LYSVKSYGEFEFWF 155 (452)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCc----------HHHHHHHHHHHHHHHH-HHhcchhhHHHHHH
Confidence 999999999999988888888888888888887765321 1222222222222222 33455555554443
Q ss_pred HHHHHHHH---HHhhhhhhccC-c--cc---CC--C-C--CcccCCchhhHHHHHhhhcccceeccchhhhccCCcc-ch
Q 042581 212 ILMSVLIF---LSVAFTAIFGG-V--KA---NH--R-I--PVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK-FT 276 (459)
Q Consensus 212 ~~~~~~~~---~~~~~~~~~~~-~--~~---~~--~-~--~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~-~~ 276 (459)
.+..+..+ +++........ . +. .+ + . .+.++.++..++...+|+|.|.+.+....+|+|||+| .|
T Consensus 156 ~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iP 235 (452)
T TIGR01773 156 ALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSIT 235 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHH
Confidence 32222211 11111111111 0 00 00 0 0 1122335778899999999999999999999999985 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 042581 277 KVSIVSFTLVTALNTALGFMGTKL 300 (459)
Q Consensus 277 ~~~~~~~~~~~~~Y~~~g~~gy~~ 300 (459)
|++..+...+.++|++........
T Consensus 236 rAi~~~~~~~~~~y~l~~~~~~~~ 259 (452)
T TIGR01773 236 RATNSVIWRIIVFYLGSIFIVVAL 259 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHeeE
Confidence 999988888899999865544433
No 28
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.78 E-value=3.7e-16 Score=158.01 Aligned_cols=241 Identities=14% Similarity=0.122 Sum_probs=164.7
Q ss_pred CCCCCchHHHHHHHHHhhhhhccchhHHHHhhhc-hH-HHHHHHHHHHHHHHHHHHHHHHhhhCCC-CCCHHHHHHHHhc
Q 042581 56 SHAGSSFAHAVINMAGMLIGLGQLSTPYAIENGG-WA-SAFLLIGLGVICAYSAHLLGKCLDKNPK-SRSYIDIGQHAFG 132 (459)
Q Consensus 56 ~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G-~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~y~~~~~~~~G 132 (459)
.+|+.+.+++++..+++++|+|++.+|....+.| .. .++.+++.+++....+..+.|.+.+.|+ .+...++.++.+|
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G 84 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFG 84 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcc
Confidence 3678999999999999999999999997766544 43 4667888888888899999999999998 7888899999999
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHH
Q 042581 133 RKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGI 212 (459)
Q Consensus 133 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 212 (459)
|+.+++..+.+++.......++.....+++..+++....+.+ .......+...+.....-.++.+....++.+..
T Consensus 85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~-----~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~~~~ 159 (473)
T TIGR00905 85 PYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNP-----VPSILGASVLLWVFTFLVLRGVRQAAFINTITT 159 (473)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCc-----HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 999999999988776666677777777777777663221110 011111111122222222445565555555554
Q ss_pred HHHHHHHHHhhhhhh--ccCccc--C--CC-CC--cccCCchhhHHHHHhhhcccceeccchhhhccCCccchhHHHHHH
Q 042581 213 LMSVLIFLSVAFTAI--FGGVKA--N--HR-IP--VLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSKFTKVSIVSF 283 (459)
Q Consensus 213 ~~~~~~~~~~~~~~~--~~~~~~--~--~~-~~--~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~~~~~~~~~~ 283 (459)
...+..++.++.... .+.... + +. .+ ..++..+..++...+|+|.|.+......+|+||+|+.+|++..+.
T Consensus 160 ~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~r~iPrai~~~~ 239 (473)
T TIGR00905 160 IAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNKSDVGKATVLGT 239 (473)
T ss_pred HHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccccchHHHHHHH
Confidence 433332222222111 111110 0 11 01 112335667788899999999999999999999446999999999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 042581 284 TLVTALNTALGFMGTKLF 301 (459)
Q Consensus 284 ~~~~~~Y~~~g~~gy~~f 301 (459)
.++.++|++.........
T Consensus 240 ~i~~~~Yil~~~~~~~~~ 257 (473)
T TIGR00905 240 LGALVIYILITLLSLGVL 257 (473)
T ss_pred HHHHHHHHHHHHHHHhCc
Confidence 999999998877654433
No 29
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.78 E-value=4.1e-16 Score=157.61 Aligned_cols=237 Identities=14% Similarity=0.086 Sum_probs=158.8
Q ss_pred CCCCCCchHHHHHHHHHhhhhhccchhH-HHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhc
Q 042581 55 NSHAGSSFAHAVINMAGMLIGLGQLSTP-YAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFG 132 (459)
Q Consensus 55 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP-~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G 132 (459)
+.+|+.+.++..+..++++||+|++..| .+.+.+|.. .++.+++.+++.......+.|.+.+.|+.+++..++++.+|
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~~g 90 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARYLG 90 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhcC
Confidence 4678899999999999999999999888 557788865 66778889999999999999999999998899999999999
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHH
Q 042581 133 RKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGI 212 (459)
Q Consensus 133 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 212 (459)
|..++++.+..++.....+.......+.++..+.+..+ ...+.++..++.. +.-.++.+.....+....
T Consensus 91 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----------~~~~~~~~~~~~~-~in~~gvk~~~~~~~~~~ 159 (471)
T PRK11387 91 PATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQVP----------VWPWCLLFCALIF-GLNVVSTRFFAEGEFWFS 159 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCc----------HHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHH
Confidence 99999999999887766665555555555554433211 1122222222222 222234444443332222
Q ss_pred HHHHHHHH---Hhhhhhhcc-----Cccc-C--CCCCccc-----CCchhhHHHHHhhhcccceeccchhhhccCCcc-c
Q 042581 213 LMSVLIFL---SVAFTAIFG-----GVKA-N--HRIPVLN-----LHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK-F 275 (459)
Q Consensus 213 ~~~~~~~~---~~~~~~~~~-----~~~~-~--~~~~~~~-----~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~-~ 275 (459)
+..+..++ ++....... +... + ++....+ ..++..++...+|+|.|.+.+....+|+|||+| +
T Consensus 160 ~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~i 239 (471)
T PRK11387 160 LIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVI 239 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHH
Confidence 21111111 111111100 0000 0 0001111 124667778899999999999999999999985 9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042581 276 TKVSIVSFTLVTALNTALGFMGTKLFG 302 (459)
Q Consensus 276 ~~~~~~~~~~~~~~Y~~~g~~gy~~fg 302 (459)
+|++..+..++.++|++..+......+
T Consensus 240 PrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 240 PVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 999999999999999988765544433
No 30
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.78 E-value=5e-16 Score=156.81 Aligned_cols=234 Identities=12% Similarity=0.108 Sum_probs=158.5
Q ss_pred cCCCCCCchHHHHHHHHHhhhhhccchhH-HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhc
Q 042581 54 NNSHAGSSFAHAVINMAGMLIGLGQLSTP-YAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFG 132 (459)
Q Consensus 54 ~~~~~~~s~~~~~~~l~~~~iG~Gil~lP-~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G 132 (459)
++.+|+.+.++.....++++||+|++..| .+++++|...++.+++.+++.......+.|.....|...++.+++++.+|
T Consensus 16 ~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~g 95 (469)
T PRK11049 16 QSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLG 95 (469)
T ss_pred hhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhC
Confidence 34789999999999999999999999987 67888887556677778888888888889987766666778899999999
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHH
Q 042581 133 RKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGI 212 (459)
Q Consensus 133 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 212 (459)
|..++++.|..++.......++....+.++..+++..+ ...+..+...+...+. .++.+....++.+..
T Consensus 96 ~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~~----------~~~~~~~~~~~~~~iN-~~g~~~~~~i~~~~~ 164 (469)
T PRK11049 96 PWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDLS----------DWVASLAVVLLLLSLN-LATVKMFGEMEFWFA 164 (469)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----------HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHH
Confidence 99999999999987766666667777777776654321 1222222222222222 224444444444433
Q ss_pred HHHHHHHHHhhhhh---hcc---Ccc-----cCC---C--CCcccCCchhhHHHHHhhhcccceeccchhhhccCCcc-c
Q 042581 213 LMSVLIFLSVAFTA---IFG---GVK-----ANH---R--IPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK-F 275 (459)
Q Consensus 213 ~~~~~~~~~~~~~~---~~~---~~~-----~~~---~--~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~-~ 275 (459)
...+..++.+++.+ ... ..+ ..+ . ..+.++.++..++...+|+|.|.+.+....+|+|||+| .
T Consensus 165 ~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~i 244 (469)
T PRK11049 165 MIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSL 244 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHH
Confidence 22222222211111 111 000 000 0 01123345788999999999999999999999999986 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 042581 276 TKVSIVSFTLVTALNTALGFMGT 298 (459)
Q Consensus 276 ~~~~~~~~~~~~~~Y~~~g~~gy 298 (459)
+|++..+...+.++|++......
T Consensus 245 Prai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 245 PRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHe
Confidence 99998777778888887666544
No 31
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.77 E-value=4.2e-16 Score=159.57 Aligned_cols=355 Identities=11% Similarity=0.048 Sum_probs=214.2
Q ss_pred cCCCCCCchHHHHHHHHHhhhhhccchhHHH-H-hhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHh
Q 042581 54 NNSHAGSSFAHAVINMAGMLIGLGQLSTPYA-I-ENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAF 131 (459)
Q Consensus 54 ~~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~-~-~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~ 131 (459)
++.+|+.+.++.+...++.++|+|++.+|.. . +.+|...++.+++.++.+...+....|.+.+.|+.++...+.++.+
T Consensus 24 ~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~~ 103 (557)
T TIGR00906 24 SKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVTV 103 (557)
T ss_pred cchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHHh
Confidence 3467899999999999999999999999854 3 3577666677888899999999999999999998888888889999
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCcc----C---ccccccchhhHHHHHHHHHHHhhcccCCCCCh
Q 042581 132 GRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSL----D---LSWAKLSTSQMLTVIAVLIALPSLWLRDLSSI 204 (459)
Q Consensus 132 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~----~---~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 204 (459)
|+..++++.|.+++.....+.+.....++++..++..... . ...........+..+..++++.....++.+..
T Consensus 104 G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik~s 183 (557)
T TIGR00906 104 GELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKES 183 (557)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchhHH
Confidence 9999999999999887777777777777777766542100 0 00000001111112222222223334677777
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhcc-Cccc-C-----C--CCCcccCCchhhHHHHHhhhcccceeccchhhhccCCcc-
Q 042581 205 SFLSVGGILMSVLIFLSVAFTAIFG-GVKA-N-----H--RIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK- 274 (459)
Q Consensus 205 ~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~-~-----~--~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~- 274 (459)
++++.+.....+..++.++..+... +.+. . . +..+.++.++..+....+|+|.|.+.+....+|.|||+|
T Consensus 184 ~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~ 263 (557)
T TIGR00906 184 AWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRA 263 (557)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCcccc
Confidence 7777665544444333333333221 1111 1 0 111223446788899999999999999999999999986
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCCC---Chhh---HhhcCCCchhHHHHHHHHHHHHhhhhccchhhhhHHHHHh
Q 042581 275 FTKVSIVSFTLVTALNTALGFMGTKLFGPG---VNSQ---ITLSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLEN 348 (459)
Q Consensus 275 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~---~~~~---il~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~ 348 (459)
.+|++..++.+++++|+++.+.-....+.+ .++. ...... .++...+..+...+..+.+....++...+.+..
T Consensus 264 iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g-~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~a 342 (557)
T TIGR00906 264 IPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVG-WGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYA 342 (557)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998876643332211 1111 122222 123333333333434444333333444444433
Q ss_pred h-----CCCC---ccchhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHhhhHhHhHHHHhhhhHHHHHhcCC
Q 042581 349 H-----LPIS---LSARSKMMIRSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVSICICLIFPCAFYIKISWP 414 (459)
Q Consensus 349 ~-----~~~~---~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~~ 414 (459)
. +|+. .+++.+...+. ..+...++.+++.. .+++.+.++.. .+..+.|.++++..+.+|++
T Consensus 343 marDGlLP~~fakv~~r~~tP~~A--il~~~iv~~il~~~-~~~~~l~~l~s--ig~ll~y~lv~~~~l~lR~~ 411 (557)
T TIGR00906 343 MARDGLLFKWLAQINSKTKTPINA--TVVSGAIAALMAFL-FDLKALVDLLS--IGTLLAYSLVAACVLILRYQ 411 (557)
T ss_pred HHcCCCccHHHhccCCCCCCcHHH--HHHHHHHHHHHHHH-cCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcc
Confidence 2 2221 11122222211 11222222333333 34666666543 33467888888777777644
No 32
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.77 E-value=2.2e-16 Score=154.24 Aligned_cols=337 Identities=15% Similarity=0.181 Sum_probs=221.9
Q ss_pred CCCchHHHHHHHHHhhhhhccchhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchhhH
Q 042581 58 AGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGR 136 (459)
Q Consensus 58 ~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~ 136 (459)
++.|.+|..+.++++++|+|++.+|....+.+-. +++..++.+++.......+.+..+++|+ .+..|+.++.+||+.+
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~-~~~~~~~~~~~Gk~~g 79 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE-KNFSEILSKYLGKILG 79 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHhhHHHH
Confidence 4688999999999999999999999876665544 8888888999999999999999999998 6899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHH
Q 042581 137 AAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMSV 216 (459)
Q Consensus 137 ~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 216 (459)
++..+.+..+....+.......++.++....... ..++..+..++..-....++++....++.+.....+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t----------p~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i 149 (359)
T TIGR00912 80 RLLSILFILYFFLIAAYLIRIFADFIKTYLLPRT----------PIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFL 149 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 9999988888777777777777777765532211 122223333333333444577777777766655444
Q ss_pred HHH-HHhhhhhhcc-CcccCCCCCcccCCchhhHHH-HHhhhcccceeccchhhhccCCccchhHHHHHHHHHHHHHHHH
Q 042581 217 LIF-LSVAFTAIFG-GVKANHRIPVLNLHKIPHISG-LYIFSYAGHIVFPNLYKAMKDPSKFTKVSIVSFTLVTALNTAL 293 (459)
Q Consensus 217 ~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~fsf~~~~~i~~i~~e~k~p~~~~~~~~~~~~~~~~~Y~~~ 293 (459)
... +.+....... +.++-.+....++.++..+.. ...++|.+.+.+.....++|||+|.+|+...+..++.++|...
T Consensus 150 ~~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~~~~~~~~ly~~~ 229 (359)
T TIGR00912 150 ILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVLLYILT 229 (359)
T ss_pred HHHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHH
Confidence 431 2222222221 111112222334555555554 7889999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCChhhHh-------hcCCCchhHH---HHHHHHHHHHhhhhccchhhhhHHHHHhhCCCCccchhhHHHH
Q 042581 294 GFMGTKLFGPGVNSQIT-------LSMPQHLVVT---KIALWATVLTPMTKYALEFAPLAIQLENHLPISLSARSKMMIR 363 (459)
Q Consensus 294 g~~gy~~fg~~~~~~il-------~~~~~~~~~~---~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (459)
.+.....+|.+..++.. ....-.+... .+....+....++...+..+.....+.+.++.++.+. ..
T Consensus 230 ~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~- 305 (359)
T TIGR00912 230 TFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRKYSI---LI- 305 (359)
T ss_pred HHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcch---hH-
Confidence 99888888854332211 1111111221 2234556666777777888888888998877664321 11
Q ss_pred HHHHHHHHHHHHHHHHhCchHHHHH---HHhhhHhHhHHHHhhhhHHHHHhcCC
Q 042581 364 SSVGSLLLIIILTLALSLPYFQYVL---SLTGSLVSICICLIFPCAFYIKISWP 414 (459)
Q Consensus 364 ~~~~~~~~~~~~~ia~~~~~~~~~~---~~~Ga~~~~~~~~ilP~l~~l~~~~~ 414 (459)
..... +.+.++...++..... +..+ ..+....+++|.++.+...-|
T Consensus 306 --~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~P~ll~~i~~ik 354 (359)
T TIGR00912 306 --LPVLM--VIFSISFFPDSSNQLFDYLEFLP-IIAIVFFLLLPLILFIIVKIK 354 (359)
T ss_pred --HHHHH--HHHHHHHccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 11111 2333443333343322 2222 333456667899877765533
No 33
>PRK10836 lysine transporter; Provisional
Probab=99.77 E-value=1.5e-15 Score=154.11 Aligned_cols=237 Identities=14% Similarity=0.111 Sum_probs=154.4
Q ss_pred cCCCCCCchHHHHHHHHHhhhhhccchhH-HHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHh
Q 042581 54 NNSHAGSSFAHAVINMAGMLIGLGQLSTP-YAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAF 131 (459)
Q Consensus 54 ~~~~~~~s~~~~~~~l~~~~iG~Gil~lP-~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~ 131 (459)
++.+|+.+.++..+..++++||+|++..| .+.+.+|.. .++.+++.+++....+..+.|.+.+.|+.++...++++.+
T Consensus 11 ~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~~~~ 90 (489)
T PRK10836 11 PGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYV 90 (489)
T ss_pred ccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHc
Confidence 44678999999999999999999999999 578888876 6888899999999999999999999999999999999999
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHH
Q 042581 132 GRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGG 211 (459)
Q Consensus 132 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 211 (459)
|+..++++.|.+++...............++..+.+..+ ...+..+..+++..+. ..+.+.....+...
T Consensus 91 g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~~~----------~~~~~~~~~~~~~~lN-~~gv~~~~~~~~~~ 159 (489)
T PRK10836 91 EEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDTP----------GWIWSALFLGVIFLLN-YISVRGFGEAEYWF 159 (489)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc----------hHHHHHHHHHHHHHHH-HHcchhhhhhHHHH
Confidence 999999999988875544443333333333444333211 1112222222222222 22334333333222
Q ss_pred H---HHHHHHHHHhhhhh---hccCcc------cCC-CCCc-ccCCchhhHHHHHhhhcccceeccchhhhccCCcc-ch
Q 042581 212 I---LMSVLIFLSVAFTA---IFGGVK------ANH-RIPV-LNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK-FT 276 (459)
Q Consensus 212 ~---~~~~~~~~~~~~~~---~~~~~~------~~~-~~~~-~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~-~~ 276 (459)
. +..+..++++.... ...+.+ ... ..+. .++..+..+.....|+|.|.+.+....+|+|||+| .+
T Consensus 160 ~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iP 239 (489)
T PRK10836 160 SLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIP 239 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHH
Confidence 1 11111111111111 111100 000 0011 12223444555677999999999999999999985 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhc
Q 042581 277 KVSIVSFTLVTALNTALGFMGTKLF 301 (459)
Q Consensus 277 ~~~~~~~~~~~~~Y~~~g~~gy~~f 301 (459)
|++..++..+.++|++.........
T Consensus 240 rAi~~~~~~v~~~Yvl~~~~~~~~v 264 (489)
T PRK10836 240 RAVRQVFWRILLFYVFAILIISLII 264 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheec
Confidence 9999999999999998876554443
No 34
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.77 E-value=3.3e-16 Score=167.43 Aligned_cols=244 Identities=10% Similarity=0.116 Sum_probs=171.4
Q ss_pred ccCCCCCCchHHHHHHH-HHhhhhhccch-hHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhh-CCCCCCHHHHHH
Q 042581 53 ENNSHAGSSFAHAVINM-AGMLIGLGQLS-TPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDK-NPKSRSYIDIGQ 128 (459)
Q Consensus 53 ~~~~~~~~s~~~~~~~l-~~~~iG~Gil~-lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~y~~~~~ 128 (459)
++..+++.+++.+++.- +.+++|+|++. +++...++|.. +++.+++.++++..++..+.+.+.+ .++.+.-..+.+
T Consensus 71 ~~~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yis 150 (953)
T TIGR00930 71 PPAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLIS 150 (953)
T ss_pred CCCCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 34556789999999999 99999999976 55889999987 8888999999999999999998886 666667777888
Q ss_pred HHhchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHH
Q 042581 129 HAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLS 208 (459)
Q Consensus 129 ~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 208 (459)
+.||+..++.+++..++.....+..|.+..++++..+++............+.+.+..++.+++..++ ....+....++
T Consensus 151 ralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In-~~Gvk~~ak~q 229 (953)
T TIGR00930 151 RSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGIS-FAGMEWENKAQ 229 (953)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHH-HhhHHHHHHHH
Confidence 99999999999999999888999999999999999887542210000011112333333333333333 23555555555
Q ss_pred HHHHHHHHHHHHHhhhhhhccCccc-------------CCCC--CcccC-CchhhHHHHHhhhcccceeccchhhhccCC
Q 042581 209 VGGILMSVLIFLSVAFTAIFGGVKA-------------NHRI--PVLNL-HKIPHISGLYIFSYAGHIVFPNLYKAMKDP 272 (459)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~--~~~~~-~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p 272 (459)
.+.+++.++.++.+++..+....+. ..+. .+.+. .++...++++++||.|.+...++.+|+|||
T Consensus 230 ~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgElKnP 309 (953)
T TIGR00930 230 VLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDLKDP 309 (953)
T ss_pred HHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 5444433333333322222111000 0000 11111 237778888999999999999999999999
Q ss_pred cc-chhHHHHHHHHHHHHHHHHHHHH
Q 042581 273 SK-FTKVSIVSFTLVTALNTALGFMG 297 (459)
Q Consensus 273 ~~-~~~~~~~~~~~~~~~Y~~~g~~g 297 (459)
+| +++++..++.+++++|+++.+..
T Consensus 310 ~r~IPratl~ai~i~~vlYllv~~~~ 335 (953)
T TIGR00930 310 QKAIPKGTLLAILTTTVVYLGSVVLF 335 (953)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 85 99999999999999999987643
No 35
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.76 E-value=1.6e-15 Score=152.44 Aligned_cols=346 Identities=11% Similarity=0.094 Sum_probs=205.2
Q ss_pred CCCCCCchHHHHHHHHHhhhhhccchhH-HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhch
Q 042581 55 NSHAGSSFAHAVINMAGMLIGLGQLSTP-YAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGR 133 (459)
Q Consensus 55 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP-~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~ 133 (459)
+.+|+.+.++..+..++++||+|++..| .+.+.+|...++.+++.+++....+..+.|.+.+.|..+++.+.+++.+||
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~~g~ 88 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGS 88 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHcCc
Confidence 4679999999999999999999999988 556677754667788889999999999999999999989999999999999
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHH
Q 042581 134 KGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGIL 213 (459)
Q Consensus 134 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 213 (459)
..+++.++..++.....+.+.....+++++.+.++.+ ...+..+...+...+. ..+.+....++.+...
T Consensus 89 ~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~----------~~~~~~i~~~~~~~lN-~~gv~~~~~~~~~~~~ 157 (456)
T PRK10238 89 FAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIP----------TWVSAAVFFVVINAIN-LTNVKVFGEMEFWFAI 157 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCc----------HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHH
Confidence 9999999999999888888888888888877755321 2222222222222222 2234444444443322
Q ss_pred HHHHHHHHh----hhhhhcc--Ccc--cCCCCC-----cccCCchhhHHHHHhhhcccceeccchhhhccCCcc-chhHH
Q 042581 214 MSVLIFLSV----AFTAIFG--GVK--ANHRIP-----VLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK-FTKVS 279 (459)
Q Consensus 214 ~~~~~~~~~----~~~~~~~--~~~--~~~~~~-----~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~-~~~~~ 279 (459)
..+..++.+ +...... ... ..+..+ +.++.++..++....|+|.|.+.+....+|+|||+| .||++
T Consensus 158 iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi 237 (456)
T PRK10238 158 IKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKAT 237 (456)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHH
Confidence 222211111 1111111 100 000000 112235557788899999999999999999999985 99999
Q ss_pred HHHHHHHHHHHHHHHHHHH--hhcCCC--ChhhH---hhcCCCchhHHHHHHHHHHHHhhhhccchhhhhHHHHHhh---
Q 042581 280 IVSFTLVTALNTALGFMGT--KLFGPG--VNSQI---TLSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENH--- 349 (459)
Q Consensus 280 ~~~~~~~~~~Y~~~g~~gy--~~fg~~--~~~~i---l~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~--- 349 (459)
..+.....++|+....... .-+.+- ..++. ..+... .....+...+..+..+.+..-..+...+.+...
T Consensus 238 ~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~-~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ard 316 (456)
T PRK10238 238 NQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGD-TFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQ 316 (456)
T ss_pred HHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9888888888876533322 111111 01111 122222 223333344444444433333344444444332
Q ss_pred --CCCC---ccchhhHHHHHHHHHHHHHHHHHHHHhCc--hHHHHHHHhhhHhHhHHHHhhhhHHHHHhcCC
Q 042581 350 --LPIS---LSARSKMMIRSSVGSLLLIIILTLALSLP--YFQYVLSLTGSLVSICICLIFPCAFYIKISWP 414 (459)
Q Consensus 350 --~~~~---~~~~~~~~~~~~~~~~~~~~~~~ia~~~~--~~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~~ 414 (459)
+|+. .+++.......++...+..+..++....| .++.++++. ..+..+.|++|++.+++.+|+
T Consensus 317 g~lP~~f~kv~~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~--~~~~~i~y~~~~~~~l~~r~~ 386 (456)
T PRK10238 317 GNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALV--VSALVINWAMISLAHMKFRRA 386 (456)
T ss_pred CCccHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 2211 01111111111222222222222222223 255555553 345568899999999987765
No 36
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.76 E-value=1.1e-15 Score=155.81 Aligned_cols=243 Identities=15% Similarity=0.103 Sum_probs=159.8
Q ss_pred ccCCCCCCchHHHHHHHHHhhhhhccchhHH-HHhhhchHH--HHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 042581 53 ENNSHAGSSFAHAVINMAGMLIGLGQLSTPY-AIENGGWAS--AFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQH 129 (459)
Q Consensus 53 ~~~~~~~~s~~~~~~~l~~~~iG~Gil~lP~-~~~~~G~~g--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~ 129 (459)
+++.+|+.+.++.+...+++++|+|++..|. +.+.+|..| ++.+++.+++....+..+.|.+.+.|+.+......++
T Consensus 37 ~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~~~ 116 (501)
T TIGR00911 37 AVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYILE 116 (501)
T ss_pred ccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhHHh
Confidence 3457789999999999999999999999985 566677544 3556778888888999999999999988888899999
Q ss_pred HhchhhHhHHHHHHHH-HHHHHHHHHHHHHHhhhh-hhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHH
Q 042581 130 AFGRKGRAAAATFIYL-EIFMALVSYTILLHDNLI-TVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFL 207 (459)
Q Consensus 130 ~~G~~~~~~~~~~~~~-~~~g~~~~y~i~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~ 207 (459)
.+||..+++..+..+. ...+.+..+....++++. .+.++...+. + ....+.++...+.. ..-.++.+....+
T Consensus 117 ~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~--~---~~~~i~~~~i~~~~-~ln~~Gvk~~~~~ 190 (501)
T TIGR00911 117 VFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPE--W---AIRLVAVLCVLLLT-LVNCLSVKWATRV 190 (501)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCch--H---HHHHHHHHHHHHHH-HHHHhhhHHHHHH
Confidence 9999999988887654 233445556666666653 2333221110 0 01122222222222 2223355555555
Q ss_pred HHHHHHHHHHHHHHhhhhh---hccCcc--cCCCCCc----ccCCchhhHHHHHhhhcccceeccchhhhccCCcc-chh
Q 042581 208 SVGGILMSVLIFLSVAFTA---IFGGVK--ANHRIPV----LNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK-FTK 277 (459)
Q Consensus 208 s~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~----~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~-~~~ 277 (459)
+.+.....+..++.++... ...+.. .+..... .++.++..++...+|+|.|.+.+....+|+|||+| .+|
T Consensus 191 ~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPr 270 (501)
T TIGR00911 191 QDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPI 270 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHH
Confidence 5554433333222222221 111111 1101111 12345677889999999999999999999999985 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 042581 278 VSIVSFTLVTALNTALGFMGTKLF 301 (459)
Q Consensus 278 ~~~~~~~~~~~~Y~~~g~~gy~~f 301 (459)
++..+..++.++|++..+......
T Consensus 271 Ai~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 271 AIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999876654443
No 37
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.75 E-value=5.6e-15 Score=148.85 Aligned_cols=233 Identities=17% Similarity=0.124 Sum_probs=161.0
Q ss_pred cCCCCCCchHHHHHHHHHhhhhhccchhH-HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhc
Q 042581 54 NNSHAGSSFAHAVINMAGMLIGLGQLSTP-YAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFG 132 (459)
Q Consensus 54 ~~~~~~~s~~~~~~~l~~~~iG~Gil~lP-~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G 132 (459)
++.+|+.+.++.++..+++++|+|++.+| .+.+.+|...++.+++.+++....+..+.|...+.|..++..+++++.+|
T Consensus 5 ~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~~G 84 (457)
T PRK10580 5 NKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLG 84 (457)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHcC
Confidence 34678899999999999999999999998 55667776577888889999999999999999999988899999999999
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHH
Q 042581 133 RKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGI 212 (459)
Q Consensus 133 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 212 (459)
|..++++.+.+++.....+.......+.++..++++.+ ...+.++..++.. ..-.++.+....++.+..
T Consensus 85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~-~ln~~gv~~~~~~~~~~~ 153 (457)
T PRK10580 85 PLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVP----------HWIWVLSVVLIIC-AVNLMSVKVFGELEFWFS 153 (457)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----------hHHHHHHHHHHHH-HHHHccchhHHHHHHHHH
Confidence 99999999999887766666666677777776654321 1222222222222 222335555555444332
Q ss_pred HHHHHHHHHhhh-------hhhccC-ccc------CCC-CCcccCCchhhHHHHHhhhcccceeccchhhhccCCcc-ch
Q 042581 213 LMSVLIFLSVAF-------TAIFGG-VKA------NHR-IPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK-FT 276 (459)
Q Consensus 213 ~~~~~~~~~~~~-------~~~~~~-~~~------~~~-~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~-~~ 276 (459)
+..+..++.++. ...... .+. ++. ..+.++.++..++....|+|.|.+.+....+|+|||+| .+
T Consensus 154 ~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iP 233 (457)
T PRK10580 154 FFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIP 233 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHH
Confidence 222221111111 111111 000 000 11122335667888999999999999999999999996 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 042581 277 KVSIVSFTLVTALNTALGFMG 297 (459)
Q Consensus 277 ~~~~~~~~~~~~~Y~~~g~~g 297 (459)
|++..+...+.++|.......
T Consensus 234 rAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 234 RAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999988888888888775544
No 38
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.75 E-value=3.5e-15 Score=149.89 Aligned_cols=232 Identities=10% Similarity=0.060 Sum_probs=160.6
Q ss_pred cCCCCCCchHHHHHHHHHhhhhhccchhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhc
Q 042581 54 NNSHAGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFG 132 (459)
Q Consensus 54 ~~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G 132 (459)
++.+|+.+.++.+...++.++|+...+.+.+++..|+. -++..++.+++....+..+.|.+.+.|+..+...++++.+|
T Consensus 3 ~~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~~~G 82 (442)
T TIGR00908 3 RQLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARRAFG 82 (442)
T ss_pred chhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhC
Confidence 34678899999999999999984445667888899987 45666777778888888999999999998899999999999
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHH
Q 042581 133 RKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGI 212 (459)
Q Consensus 133 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 212 (459)
|..+++..+..++.......++....++++..+++..+ ...+..+...+.. +.-.+..+....++....
T Consensus 83 ~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~----------~~~~~~~~~~~~~-~ln~~g~~~~~~i~~~~~ 151 (442)
T TIGR00908 83 PWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGP----------GWLAALVFYIVFI-GINILGVGEAAKLEFVVT 151 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc----------hhHHHHHHHHHHH-HHHHHHHHHHHhHHHHHH
Confidence 99999999999988888888888899999888775432 1222222222222 222234444444444333
Q ss_pred HHHHHHHHHhhhhhhcc-Ccc----cC-CC---CCcccCCchhhHHHHHhhhcccceeccchhhhccCCcc-chhHHHHH
Q 042581 213 LMSVLIFLSVAFTAIFG-GVK----AN-HR---IPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK-FTKVSIVS 282 (459)
Q Consensus 213 ~~~~~~~~~~~~~~~~~-~~~----~~-~~---~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~-~~~~~~~~ 282 (459)
+..+..+++.+.....+ +.. .+ .+ ....++.++..++...+|+|.|++.+....+|+|||+| .+|++..+
T Consensus 152 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s 231 (442)
T TIGR00908 152 AVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGA 231 (442)
T ss_pred HHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHH
Confidence 22222222111111111 100 00 00 01112235667788889999999999999999999974 99999999
Q ss_pred HHHHHHHHHHHHHH
Q 042581 283 FTLVTALNTALGFM 296 (459)
Q Consensus 283 ~~~~~~~Y~~~g~~ 296 (459)
..++.++|+...+.
T Consensus 232 ~~~~~~~~~~~~~~ 245 (442)
T TIGR00908 232 ILTLLALAAGILVV 245 (442)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988876543
No 39
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.73 E-value=3.4e-15 Score=150.00 Aligned_cols=235 Identities=15% Similarity=0.106 Sum_probs=157.2
Q ss_pred CCCCCCchHHHHHHHHHhhhhhccchhHHH-HhhhchH--HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHh
Q 042581 55 NSHAGSSFAHAVINMAGMLIGLGQLSTPYA-IENGGWA--SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAF 131 (459)
Q Consensus 55 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~-~~~~G~~--g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~ 131 (459)
+.+|+.+.++.+...++.++|+|++..|.. .+..|.. .++.+++.+++....+..+.|.+.+.|+..+...+.++.+
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~~~ 84 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAG 84 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHHhc
Confidence 467899999999999999999999998865 5556643 5667788888999999999999999998777777888999
Q ss_pred chhhHhHHHHHHH-HHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHH
Q 042581 132 GRKGRAAAATFIY-LEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVG 210 (459)
Q Consensus 132 G~~~~~~~~~~~~-~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 210 (459)
||..+++..+... .........+....++++..+.+... . ....+. +.....+-..-.++.+....++.+
T Consensus 85 g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~-------~-~~~~~~-~~~~~~~~~ln~~gv~~~~~v~~~ 155 (445)
T PRK11357 85 SRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPIDP-------L-LGKFIA-AGLIIAFMLLHLRSVEGGAAFQTL 155 (445)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-------H-HHHHHH-HHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999999744 33444555667777777765433210 0 011111 111122222223455555555555
Q ss_pred HHHHHHHHHHHhhhhhh--ccCcccCC--CCC---cccCCchhhHHHHHhhhcccceeccchhhhccCCcc-chhHHHHH
Q 042581 211 GILMSVLIFLSVAFTAI--FGGVKANH--RIP---VLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK-FTKVSIVS 282 (459)
Q Consensus 211 ~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~---~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~-~~~~~~~~ 282 (459)
..+..+..+++++.... ..+.+..+ ... ..++.++..++...+|+|.|.+.+....+|+|||+| .+|++..+
T Consensus 156 ~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~ 235 (445)
T PRK11357 156 ITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGS 235 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHHH
Confidence 44333332222221111 11111111 110 112345667888899999999999999999999985 89999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 042581 283 FTLVTALNTALGFMGT 298 (459)
Q Consensus 283 ~~~~~~~Y~~~g~~gy 298 (459)
+.++.++|++......
T Consensus 236 ~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 236 CLLVLVLYTLLALVIS 251 (445)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998776544
No 40
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.73 E-value=7.6e-15 Score=148.98 Aligned_cols=229 Identities=14% Similarity=0.083 Sum_probs=159.8
Q ss_pred CCCCchHHHHHHHHHhhhhhccchhH-HHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCC-CCCHHHHHHHHhch
Q 042581 57 HAGSSFAHAVINMAGMLIGLGQLSTP-YAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPK-SRSYIDIGQHAFGR 133 (459)
Q Consensus 57 ~~~~s~~~~~~~l~~~~iG~Gil~lP-~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~y~~~~~~~~G~ 133 (459)
+|+.+.++.....++.+||+|++..| .+.+.+|.. .++.+++.+++.......+.|.+.+.|+ ...|.+++++.+||
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~ 80 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDP 80 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCc
Confidence 47899999999999999999999877 778888866 4677888899999999999999999994 45899999999999
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHH
Q 042581 134 KGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGIL 213 (459)
Q Consensus 134 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 213 (459)
..++++.+.+++.....+.+.....+.++..+.+..+ ...+..+..++.. +.-.++.+....++.....
T Consensus 81 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~-~in~~gv~~~~~~~~~~~~ 149 (478)
T TIGR00913 81 AFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKVN----------PAVWIAIFYVFIV-IINLFGVKGYGEAEFWFSS 149 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC----------HHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHH
Confidence 9999999999998888888888888887775543211 1122222222222 2223455555555543322
Q ss_pred HHHH---HHHHhhhhhhccCcccC---------CCCCc--c----cCCchhhHHHHHhhhcccceeccchhhhccCCcc-
Q 042581 214 MSVL---IFLSVAFTAIFGGVKAN---------HRIPV--L----NLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK- 274 (459)
Q Consensus 214 ~~~~---~~~~~~~~~~~~~~~~~---------~~~~~--~----~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~- 274 (459)
..+. .++++.......+.+.. +...+ . .+.++..++...+|+|.|.+.+....+|+|||+|
T Consensus 150 ~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~ 229 (478)
T TIGR00913 150 IKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKS 229 (478)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhH
Confidence 1111 11111111111111000 00001 1 1345677888899999999999999999999985
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 042581 275 FTKVSIVSFTLVTALNTALGFM 296 (459)
Q Consensus 275 ~~~~~~~~~~~~~~~Y~~~g~~ 296 (459)
.+|++..+..++.++|++..+.
T Consensus 230 iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 230 IPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987554
No 41
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.73 E-value=8.6e-15 Score=142.29 Aligned_cols=348 Identities=14% Similarity=0.095 Sum_probs=241.9
Q ss_pred CCCCCCchHHHHHHHHHhhhhhcc-chhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhc
Q 042581 55 NSHAGSSFAHAVINMAGMLIGLGQ-LSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFG 132 (459)
Q Consensus 55 ~~~~~~s~~~~~~~l~~~~iG~Gi-l~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G 132 (459)
+.+|+...++..++-+++.||+|+ ++...+.+++|.. .++..+++|.+..+.+..+.|.+...|...+|..++.+..+
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfvd 120 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFVD 120 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhcC
Confidence 578999999999999999999998 5688999999999 67888999999999999999999999987789999999999
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhh--cccCCCCChhHHHHH
Q 042581 133 RKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPS--LWLRDLSSISFLSVG 210 (459)
Q Consensus 133 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl--~~~~~l~~l~~~s~~ 210 (459)
+..++.++|.+++.....+...++..+..++.+.++.- +...|..+..++++.+ .-+|...+.-++-..
T Consensus 121 pa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v---------~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~ 191 (541)
T COG0833 121 PAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTV---------PPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSS 191 (541)
T ss_pred chHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCCC---------ChHHHHHHHHHHHHHHHHhcccccceehHHHHH
Confidence 99999999999999999999999999999999976541 1344555544444444 446777666554444
Q ss_pred HHHHHHHHHHHhhhhhhccCccc---------CCCC-CcccCCchhhHHHHHhhhcccceeccchhhhccCCcc-chhHH
Q 042581 211 GILMSVLIFLSVAFTAIFGGVKA---------NHRI-PVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK-FTKVS 279 (459)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~-~~~~~ 279 (459)
.-+..++.++++.+.....+.+. .++. ...++.++...+-+..|||.|.|.+--...|-+||+| .||++
T Consensus 192 iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAi 271 (541)
T COG0833 192 IKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAI 271 (541)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHH
Confidence 33333332222222222221111 1111 2244667888899999999999999999999999996 99999
Q ss_pred HHHHHHHHHHHHHHHHH-HHh-hcCCC----------ChhhHhhcCCC--chhHHHHHHHHHHHHhhhhccchhhhhHHH
Q 042581 280 IVSFTLVTALNTALGFM-GTK-LFGPG----------VNSQITLSMPQ--HLVVTKIALWATVLTPMTKYALEFAPLAIQ 345 (459)
Q Consensus 280 ~~~~~~~~~~Y~~~g~~-gy~-~fg~~----------~~~~il~~~~~--~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~ 345 (459)
.-.+.-..++|++.-++ |.+ -|.|. ..++....+.+ -.....+.+...+++++..-.-.+|...+.
T Consensus 272 k~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~ 351 (541)
T COG0833 272 KQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRM 351 (541)
T ss_pred HHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHH
Confidence 99999999999864433 222 33221 11122222211 234556778888888887777778888888
Q ss_pred HHhhCCCCc--------cchhhHHHHHHHHHHHHHHHHHHHHhCc--hHHHHHHHhhhHhHhHHHHhhhhHHHHHhcC
Q 042581 346 LENHLPISL--------SARSKMMIRSSVGSLLLIIILTLALSLP--YFQYVLSLTGSLVSICICLIFPCAFYIKISW 413 (459)
Q Consensus 346 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ia~~~~--~~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~ 413 (459)
+..+-.+.. +++.......+++.++.+++++-+..-. .++.++++.|... +++.+-=++.|++.||
T Consensus 352 L~sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~--~i~W~~I~~shirFR~ 427 (541)
T COG0833 352 LYSLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSG--FIAWGSICLSHIRFRR 427 (541)
T ss_pred HHHHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 887653322 1122223334455555555555555432 4667777777444 3445555777777664
No 42
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.72 E-value=7.4e-15 Score=147.23 Aligned_cols=331 Identities=12% Similarity=0.109 Sum_probs=198.7
Q ss_pred HHHhhhhhccchhH-HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchhhHhHHHHHHHHHH
Q 042581 69 MAGMLIGLGQLSTP-YAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGRAAAATFIYLEI 147 (459)
Q Consensus 69 l~~~~iG~Gil~lP-~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~ 147 (459)
.++++||+|++..| .+++++|...++..++.+++....+..+.|.+.+.|+.++..+++++.+||+.++++.+.+++..
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~ 82 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFW 82 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 46889999999988 57889997688888999999999999999999999998999999999999999999999999887
Q ss_pred HHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHhhhhh-
Q 042581 148 FMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMSVLIFLSVAFTA- 226 (459)
Q Consensus 148 ~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~- 226 (459)
...........+.+++.+.++. ....+..+...+...+. .++.+....++.+.....+..++.++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~lN-~~gv~~~~~i~~~~~~~ki~~li~~ii~~~ 151 (446)
T PRK10197 83 VLVIPLEANIAAMILHSWVPGI----------PIWLFSLVITLALTGSN-LLSVKNYGEFEFWLALCKVIAILAFIFLGA 151 (446)
T ss_pred HHHHHHHHHHHHHHHHhccccC----------cHHHHHHHHHHHHHHHH-HHhhHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 7777666666666655543321 12222222222222222 33445444444444332222222221111
Q ss_pred --hccCcc--c-C------C--CCCcccCCchhhHHHHHhhhcccceeccchhhhccCCcc-chhHHHHHHHHHHHHHHH
Q 042581 227 --IFGGVK--A-N------H--RIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK-FTKVSIVSFTLVTALNTA 292 (459)
Q Consensus 227 --~~~~~~--~-~------~--~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~-~~~~~~~~~~~~~~~Y~~ 292 (459)
.....+ . . + ...+..+.++..++...+|+|.|.+.+....+|+|||+| .+|++..++..+.++|++
T Consensus 152 ~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil 231 (446)
T PRK10197 152 VAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLC 231 (446)
T ss_pred HHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHH
Confidence 111100 0 0 0 011123447788999999999999999999999999986 999999999999999998
Q ss_pred HHHHHHhhcCCCCh--------hhHhhcCCCchhHHHHHHHHHHHHhhhhccchhhhhHHHHHhhC-----CCCcc--ch
Q 042581 293 LGFMGTKLFGPGVN--------SQITLSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHL-----PISLS--AR 357 (459)
Q Consensus 293 ~g~~gy~~fg~~~~--------~~il~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~-----~~~~~--~~ 357 (459)
..+........+.. ....+.... +....+...+..+..+.+..-.++...+.+...- |+... ++
T Consensus 232 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~-~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~~ 310 (446)
T PRK10197 232 SIFVVVALIPWNMPGLKAVGSYRSVLELLNI-PHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINR 310 (446)
T ss_pred HHHHHheecCcCcccccccCcHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhCc
Confidence 66654333221111 112223322 2333444454455555555444555555554432 21100 01
Q ss_pred hhHHHH-HHHHHHHHHHHHHHHHhCc--hHHHHHHHhhhHhHhHHHHhhhhHHHHHhcC
Q 042581 358 SKMMIR-SSVGSLLLIIILTLALSLP--YFQYVLSLTGSLVSICICLIFPCAFYIKISW 413 (459)
Q Consensus 358 ~~~~~~-~~~~~~~~~~~~~ia~~~~--~~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~ 413 (459)
.+...+ .++......+..+.....| .++.++++.+... .+.|+++++.+++.||
T Consensus 311 ~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~ 367 (446)
T PRK10197 311 SKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRK 367 (446)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 111111 1222222222222222222 4677777766544 3777888888887765
No 43
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.71 E-value=1.1e-14 Score=145.88 Aligned_cols=238 Identities=13% Similarity=0.119 Sum_probs=166.9
Q ss_pred CchHHHHHHHHHhhhhhccchhHHHHhhhchHHHHHHHHHHHHH-HHHHHHHHHHhhhCCCCCCHHHHHHHHhchhhHhH
Q 042581 60 SSFAHAVINMAGMLIGLGQLSTPYAIENGGWASAFLLIGLGVIC-AYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGRAA 138 (459)
Q Consensus 60 ~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~ 138 (459)
+++++++...++.++|+|++..| .....|...++..++.+.+. ........|.+.+.|+.++.....++.+||+.+++
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g~~ 79 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWGFI 79 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccchhc
Confidence 47889999999999999999999 77777766666666666665 78888889998889988999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHH-H
Q 042581 139 AATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMSV-L 217 (459)
Q Consensus 139 ~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~-~ 217 (459)
..+..++.......++.....+++...+...-.+++ ....+..+..++.....-.++.+..++++.......+ .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~ 154 (426)
T PF13520_consen 80 VGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSP-----WPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVI 154 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSH-----HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred ccceeEEEeeccccccccchhhhhhhcccccccccc-----chheeeeecccccceEeeechhhhhhhhhhhhhhhhhhh
Confidence 999999999888888888888888877542111110 0122222222222222223455556666555544444 2
Q ss_pred HHHHhhhhhhcc---Cccc-----CCCCCcccCCchhhHHHHHhhhcccceeccchhhhccCCccchhHHHHHHHHHHHH
Q 042581 218 IFLSVAFTAIFG---GVKA-----NHRIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSKFTKVSIVSFTLVTAL 289 (459)
Q Consensus 218 ~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~~~~~~~~~~~~~~~~ 289 (459)
.+++++...+.. +... .++.....+..+..++...+|+|.|.+.++...+|+|| |+.+|++..+..++.++
T Consensus 155 ~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~~~~~~~~i~ 233 (426)
T PF13520_consen 155 PLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAIIISIIIVAII 233 (426)
T ss_dssp HHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHHHHHHHHHHH
T ss_pred hhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc-hhheeecccchhHHHHH
Confidence 322222222221 1111 01222234556788999999999999999999999998 78999999999999999
Q ss_pred HHHHHHHHHhhcCCC
Q 042581 290 NTALGFMGTKLFGPG 304 (459)
Q Consensus 290 Y~~~g~~gy~~fg~~ 304 (459)
|.+..+......+++
T Consensus 234 y~l~~~~~~~~~~~~ 248 (426)
T PF13520_consen 234 YILFSIALLGALPDD 248 (426)
T ss_dssp HHHHHHHHHTTSTHC
T ss_pred Hhhhhheeeecccch
Confidence 999988777766543
No 44
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.63 E-value=2e-14 Score=144.50 Aligned_cols=347 Identities=13% Similarity=0.094 Sum_probs=229.1
Q ss_pred cCCCCCCchHHHHHHHHHhhhhhccch-hHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCC-CCHHHHHHHH
Q 042581 54 NNSHAGSSFAHAVINMAGMLIGLGQLS-TPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKS-RSYIDIGQHA 130 (459)
Q Consensus 54 ~~~~~~~s~~~~~~~l~~~~iG~Gil~-lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~y~~~~~~~ 130 (459)
.+.+|+++.++..++-++++||+|++- .+.+.++.|.. -++..++.|.....++..+.|.+.+.|.. .++..++++.
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~ 105 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRF 105 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeee
Confidence 467899999999999999999999955 67889999988 66778889999999999999999999984 8899999999
Q ss_pred hchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc---------cCCccCccccccchhhHHHHHHHHHHHhhcccCCC
Q 042581 131 FGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVF---------SGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDL 201 (459)
Q Consensus 131 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~---------~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 201 (459)
.|+..++.+.|-+++..+..+.+.....+.+++.+. +..+. ...+......++++.+..++..
T Consensus 106 i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~--------~~~~~~fla~~v~in~~gv~~~ 177 (554)
T KOG1286|consen 106 VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNP--------GGWIPDFLAFILIINLFGVLAY 177 (554)
T ss_pred eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCC--------CccHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999986 22111 1122233444444455555555
Q ss_pred CChhHHHHHHHHHHHHHHHHhhh---hhh-ccCc-cc------CCC--CCcccCCchhhHHHHHhhhcccceeccchhhh
Q 042581 202 SSISFLSVGGILMSVLIFLSVAF---TAI-FGGV-KA------NHR--IPVLNLHKIPHISGLYIFSYAGHIVFPNLYKA 268 (459)
Q Consensus 202 ~~l~~~s~~~~~~~~~~~~~~~~---~~~-~~~~-~~------~~~--~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e 268 (459)
.+.........+..++-+++..+ .+. ..+. ++ +++ ..+..+.++..++.+..|+|.|.+.+....+|
T Consensus 178 ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E 257 (554)
T KOG1286|consen 178 GEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEE 257 (554)
T ss_pred cceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHh
Confidence 55554444443333332222222 221 1111 11 111 22234778999999999999999999999999
Q ss_pred ccCCcc-chhHHHHHHHHHHHHHHHHHHHHHhh--cCCC-ChhhH------h--hcCCCchhHHHHHHHHHHHHhhhhcc
Q 042581 269 MKDPSK-FTKVSIVSFTLVTALNTALGFMGTKL--FGPG-VNSQI------T--LSMPQHLVVTKIALWATVLTPMTKYA 336 (459)
Q Consensus 269 ~k~p~~-~~~~~~~~~~~~~~~Y~~~g~~gy~~--fg~~-~~~~i------l--~~~~~~~~~~~i~~~~~~~~~~~s~p 336 (459)
.|||+| .|+++..++..++++|++..+.--+. |.+. ..++. . .+..+-....++.++..++.+.++-.
T Consensus 258 ~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n 337 (554)
T KOG1286|consen 258 AKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLN 337 (554)
T ss_pred ccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHH
Confidence 999986 99999999999999999887654332 2221 11111 1 11122223334666777777777766
Q ss_pred chhhhhHHHHHhhCCC--------CccchhhHHHHHHHHHHHHHHHHHHHHhCc-----hHHHHHHHhhhHhHhHHHHhh
Q 042581 337 LEFAPLAIQLENHLPI--------SLSARSKMMIRSSVGSLLLIIILTLALSLP-----YFQYVLSLTGSLVSICICLIF 403 (459)
Q Consensus 337 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~-----~~~~~~~~~Ga~~~~~~~~il 403 (459)
..+++..+.+...-.. +.+++ .+.+ .-.....+...+.++..+ .++.++++.|--+ .+++.+
T Consensus 338 ~~~y~~sR~l~amA~~G~~Pk~f~~v~~~-g~P~--~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~t--l~~w~~ 412 (554)
T KOG1286|consen 338 SSLYAGSRVLYALAKDGLAPKFFARVDRR-GVPL--VAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGT--LFAWTL 412 (554)
T ss_pred HHhHHhHHHHHHHHhcCCcchHHhhcCCC-CCch--hHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHH--HHHHHH
Confidence 7777777777665321 11222 2232 122233333333443332 2577777776444 344454
Q ss_pred hhHHHHHhcC
Q 042581 404 PCAFYIKISW 413 (459)
Q Consensus 404 P~l~~l~~~~ 413 (459)
=++.|++.|+
T Consensus 413 i~~~~i~~R~ 422 (554)
T KOG1286|consen 413 VALSHLRFRY 422 (554)
T ss_pred HHHHHeeeee
Confidence 4566665554
No 45
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.59 E-value=1.2e-12 Score=132.75 Aligned_cols=247 Identities=17% Similarity=0.195 Sum_probs=169.9
Q ss_pred ccCCCCCCchHH-HHHHHHHhhhhhccchhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHh
Q 042581 53 ENNSHAGSSFAH-AVINMAGMLIGLGQLSTPYAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAF 131 (459)
Q Consensus 53 ~~~~~~~~s~~~-~~~~l~~~~iG~Gil~lP~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~ 131 (459)
+++.+++.+.++ .....++.++|.|++.+|......+....+.+++.+++....+..+.|.+.+.|+.+.+.+..++.+
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~~~~ 86 (466)
T COG0531 7 SSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAKRAL 86 (466)
T ss_pred chhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehhhhc
Confidence 344567778888 8999999999999999997776665223333566667777778899999999998889999999999
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccch-hhHHHHHHHHHHHhhcccCCCCChhHHHHH
Q 042581 132 GRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLST-SQMLTVIAVLIALPSLWLRDLSSISFLSVG 210 (459)
Q Consensus 132 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 210 (459)
||+.+++..+.+++.......+.....++++..+++...... ... ......+.....+-+.-.+..+.....+.+
T Consensus 87 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~~ 162 (466)
T COG0531 87 GPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLS----IGPLLIILIALALIALLTLLNLRGIKASAKINSI 162 (466)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhc----CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999889999999999999999999998888888876532000 000 111112222222222223455555555555
Q ss_pred HHHHHHHHHHHhhhhhhcc-CcccCCCC-----CcccCCchhhHHHHHhhhcccceeccchhhhccCCc-cchhHHHHHH
Q 042581 211 GILMSVLIFLSVAFTAIFG-GVKANHRI-----PVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPS-KFTKVSIVSF 283 (459)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~-~~~~~~~~~~ 283 (459)
..+..+...+.+....... +....... ....+..+..++...+|+|.|.+.+.+..+|+|||+ +.+|++..++
T Consensus 163 ~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~ 242 (466)
T COG0531 163 ITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSL 242 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHH
Confidence 4444443333333332221 11111111 112233577888899999999999999999999997 5899999999
Q ss_pred HHHHHHHHHHHHHHHhhcCC
Q 042581 284 TLVTALNTALGFMGTKLFGP 303 (459)
Q Consensus 284 ~~~~~~Y~~~g~~gy~~fg~ 303 (459)
..+.++|++..+......++
T Consensus 243 ~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 243 LIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHHHHHHHHHHHhCccH
Confidence 99999999998887776664
No 46
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.56 E-value=1.2e-11 Score=125.16 Aligned_cols=249 Identities=11% Similarity=0.007 Sum_probs=155.2
Q ss_pred cCCCCCCchHHHHHHHHHhh-hhhccchhH-HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHh
Q 042581 54 NNSHAGSSFAHAVINMAGML-IGLGQLSTP-YAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAF 131 (459)
Q Consensus 54 ~~~~~~~s~~~~~~~l~~~~-iG~Gil~lP-~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~ 131 (459)
++.+|+.+.++.+..-++.+ +|+|+++++ .+....|...+..+++.++.....+..+.|.+.++|..+.....+++.+
T Consensus 9 ~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~~~~ 88 (475)
T TIGR03428 9 PQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSRRMG 88 (475)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHc
Confidence 34678899999999999885 999999877 6677777655666788888889999999999999999889999999999
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC-----ccCccccccchhhHHHHHHHHHHHhhcccCCCCChhH
Q 042581 132 GRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGT-----SLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISF 206 (459)
Q Consensus 132 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 206 (459)
||...++..+..++.......+.......++..+.+.. +.+........+.+...+..+++..+.-.+..+....
T Consensus 89 g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~~~~ 168 (475)
T TIGR03428 89 GEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEWMSR 168 (475)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 99999999999888765555554444444444332111 0000000000011222111222222222334555555
Q ss_pred HHHHHHHHHHHHHHHhhhhhhcc-Cccc----CCCC--CcccC-CchhhHHHHHhhhcccceeccchhhhccCCcc-chh
Q 042581 207 LSVGGILMSVLIFLSVAFTAIFG-GVKA----NHRI--PVLNL-HKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK-FTK 277 (459)
Q Consensus 207 ~s~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~--~~~~~-~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~-~~~ 277 (459)
++.+..+..+..++.++...... +.+. .+.. ...++ ..+..+.....|+|.|.+.+..+.+|+|||+| .||
T Consensus 169 i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~iPr 248 (475)
T TIGR03428 169 VNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAPR 248 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcchhhhH
Confidence 55554433332222222222111 1000 0000 00111 12344566678999999999999999999985 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Q 042581 278 VSIVSFTLVTALNTALGFMGTKLFG 302 (459)
Q Consensus 278 ~~~~~~~~~~~~Y~~~g~~gy~~fg 302 (459)
++..+..++.++|.+.-+......+
T Consensus 249 ai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 249 TILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999988877766555544443
No 47
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.55 E-value=1.7e-11 Score=124.68 Aligned_cols=247 Identities=11% Similarity=-0.034 Sum_probs=146.6
Q ss_pred CCCCCCchHHHHHHHHHhhhh--hccch-hHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 042581 55 NSHAGSSFAHAVINMAGMLIG--LGQLS-TPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHA 130 (459)
Q Consensus 55 ~~~~~~s~~~~~~~l~~~~iG--~Gil~-lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~ 130 (459)
+.+|+.+.++.+...++. +| +|+.. .+.+.+..|.. .++.+++.+++....+..+.|.+.+.|+.++....+++.
T Consensus 9 ~l~r~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~~~~ 87 (482)
T TIGR00907 9 ELKREFSLWSIFGFAFSI-SNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWSAKL 87 (482)
T ss_pred eeecccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHh
Confidence 356789999988888884 44 67755 45677788876 577788899999999999999999999988899999999
Q ss_pred hc----hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhH
Q 042581 131 FG----RKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISF 206 (459)
Q Consensus 131 ~G----~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 206 (459)
+| +...+++.|..++.....+.+.....++++............+...........+.....+.+.-.+..+....
T Consensus 88 ~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~~~~ 167 (482)
T TIGR00907 88 APPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLPTKWLPR 167 (482)
T ss_pred cccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHHHhhHhHHHH
Confidence 87 45677888888777777777776677777665432211110000000011111111111122222233444444
Q ss_pred HHHHHHHHHHHHHH-HhhhhhhccCcc-cCCC------CCcc-cC--C--chhhHHHHHhhhcccceeccchhhhccCCc
Q 042581 207 LSVGGILMSVLIFL-SVAFTAIFGGVK-ANHR------IPVL-NL--H--KIPHISGLYIFSYAGHIVFPNLYKAMKDPS 273 (459)
Q Consensus 207 ~s~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~------~~~~-~~--~--~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~ 273 (459)
++.+..+..+..++ +++........+ .+.+ .+.. ++ . .+..++....|+|.|.+.+....+|+|||+
T Consensus 168 ~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~ 247 (482)
T TIGR00907 168 ITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEIENPE 247 (482)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhcCChh
Confidence 44443322222222 111111111110 0000 0000 11 1 244455667799999999999999999998
Q ss_pred c-chhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042581 274 K-FTKVSIVSFTLVTALNTALGFMGTKLFG 302 (459)
Q Consensus 274 ~-~~~~~~~~~~~~~~~Y~~~g~~gy~~fg 302 (459)
| .+|++..+..+..++|.+..+..+...+
T Consensus 248 r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 248 VVGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5 9999999988877655544443333333
No 48
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.54 E-value=1.6e-12 Score=124.69 Aligned_cols=285 Identities=14% Similarity=0.155 Sum_probs=207.7
Q ss_pred CCchHHHHHHHHHhhhhhccchhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchhhHhH
Q 042581 59 GSSFAHAVINMAGMLIGLGQLSTPYAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGRAA 138 (459)
Q Consensus 59 ~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~ 138 (459)
|+|..|....+..+++|+|++.+|....+.+--|++..++.+.......++..+..+++|+ ++..|+.++.+||+.+.+
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~-~~l~~~~~~~~Gk~lg~i 79 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAGDAWISVLLGGLIGLLLALLIYYLLKRFPG-KTLVEISEKLFGKWLGKI 79 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCHHHHHHHHhCcHHHHH
Confidence 5789999999999999999999998765544026666667777777777788888888898 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhc-cCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHH
Q 042581 139 AATFIYLEIFMALVSYTILLHDNLITVF-SGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMSVL 217 (459)
Q Consensus 139 ~~~~~~~~~~g~~~~y~i~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 217 (459)
....+.++.+..........++.++... ++.+ .++.....+++.-....++++.+.+.+.+-....+.
T Consensus 80 i~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~TP-----------~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i 148 (320)
T PF03845_consen 80 INLLYILYFLLISALVLREFSEFIKTYLLPETP-----------IWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLI 148 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCC-----------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 9999999999988888999999888763 4432 334444444555555567888888766555544444
Q ss_pred HHHHhhhhhhccCcccC--CCCCcccCCchhhHHHHHhhhcccceeccchhhhccCCccchhHHHHHHHHHHHHHHHHHH
Q 042581 218 IFLSVAFTAIFGGVKAN--HRIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSKFTKVSIVSFTLVTALNTALGF 295 (459)
Q Consensus 218 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~~~~~~~~~~~~~~~~Y~~~g~ 295 (459)
..+.+..... .+.+++ .+....++.++..+.....+.|.+.+.+..+...+|+|+|.+|....+..++.++|...-+
T Consensus 149 ~~~~i~~~~~-~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~~~ 227 (320)
T PF03845_consen 149 LLLLILLLSI-PNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIAILISGLFLLFIIF 227 (320)
T ss_pred HHHHHHHHhc-ccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333333 223333 2333456678888888889999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCChhhHh-------hcCCCchhHH---HHHHHHHHHHhhhhccchhhhhHHHHHhhCCCCccc
Q 042581 296 MGTKLFGPGVNSQIT-------LSMPQHLVVT---KIALWATVLTPMTKYALEFAPLAIQLENHLPISLSA 356 (459)
Q Consensus 296 ~gy~~fg~~~~~~il-------~~~~~~~~~~---~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~ 356 (459)
.....||.+..++.. ...+-++... .+.-..+....+....+..+...+.+.+.++.++.+
T Consensus 228 ~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 298 (320)
T PF03845_consen 228 ITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLKDYK 298 (320)
T ss_pred HHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 999999864322211 1111111111 223445666667777788888899999988766543
No 49
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.50 E-value=8.1e-11 Score=119.29 Aligned_cols=237 Identities=12% Similarity=0.147 Sum_probs=133.5
Q ss_pred CCchHHHHHHHHHhhhhhccchhHHHHhhhchHHHHHHHHHHHHH-HHHHHHHHHHhhhCCCCCCHHHHHHHHhchhhHh
Q 042581 59 GSSFAHAVINMAGMLIGLGQLSTPYAIENGGWASAFLLIGLGVIC-AYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGRA 137 (459)
Q Consensus 59 ~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~ 137 (459)
|++.+..++..+.++++ +..+|.+ ++.|...++.+++.+++. ...+....|.+.+.|+.+....++++.+|++.++
T Consensus 2 ~~~~~~l~~~~~~~v~~--~~~~~~~-a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~~gf 78 (474)
T TIGR03813 2 KLTVVTLAIMNITAVVS--LRGLPAE-AEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGARWGF 78 (474)
T ss_pred cccHHHHHHHHHHHHHH--hhcchHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChhHHH
Confidence 46666666666666655 4455754 578876666666666654 4678888999999998888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHH-HHHHH--HHhhcccCCCCChhHHHHHH-HH
Q 042581 138 AAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTV-IAVLI--ALPSLWLRDLSSISFLSVGG-IL 213 (459)
Q Consensus 138 ~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~pl~~~~~l~~l~~~s~~~-~~ 213 (459)
+..+.+++.......+-....+..+..+.+...... ......+... +..++ .+.+.-.++.+..+.++.+. .+
T Consensus 79 ~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~~~ 155 (474)
T TIGR03813 79 LAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVDE---SLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGGIV 155 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCc---ccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 999988876543332222222222221111110000 0011222211 11111 22222344555544444332 21
Q ss_pred HHHH---HHHHhhhhh-hccCcc-cC----CCCC-cccCCchhhHHHHHhhhcccceeccchhhhccCCcc-chhHHHHH
Q 042581 214 MSVL---IFLSVAFTA-IFGGVK-AN----HRIP-VLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK-FTKVSIVS 282 (459)
Q Consensus 214 ~~~~---~~~~~~~~~-~~~~~~-~~----~~~~-~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~-~~~~~~~~ 282 (459)
..++ .+++..+.. ...+.. .+ +..+ ..++..+..+. .++|+|.|.|.+....+|+|||+| .+|++..+
T Consensus 156 ~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~ 234 (474)
T TIGR03813 156 GTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIA 234 (474)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHHhccCcccchhHHHHHH
Confidence 1111 111111111 111111 10 0011 11233333333 467899999999999999999985 99999999
Q ss_pred HHHHHHHHHHHHHHHHhhcC
Q 042581 283 FTLVTALNTALGFMGTKLFG 302 (459)
Q Consensus 283 ~~~~~~~Y~~~g~~gy~~fg 302 (459)
..++.++|++..+......+
T Consensus 235 ~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 235 ALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 99999999987666544444
No 50
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.49 E-value=1.3e-10 Score=118.40 Aligned_cols=241 Identities=14% Similarity=0.159 Sum_probs=141.3
Q ss_pred CCCCCchHHHHHHHHHhhhhhccchhHHHHhhhchHHHHHHHHHHHH-HHHHHHHHHHHhhhCCC-CCCHHHHHHHHhch
Q 042581 56 SHAGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWASAFLLIGLGVI-CAYSAHLLGKCLDKNPK-SRSYIDIGQHAFGR 133 (459)
Q Consensus 56 ~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~~~~~~~~~~-~~~~~~~l~~~~~~~~~-~~~y~~~~~~~~G~ 133 (459)
.+|+.+.++.+...+++++|.+ .+|.+++..|..+++..++.+++ ....+..+.|.+.++|+ .+.-....++++||
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G~ 82 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVGP 82 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcCc
Confidence 3678999999999999999976 56888888887766666666655 35577789999999996 68899999999999
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHh-hhhhhccCCc-cCccccccchhhHHHHHHHHH--HHhhcccCCCCChhHHHH
Q 042581 134 KGRAAAATFIYLEIFMALVSYTILLHD-NLITVFSGTS-LDLSWAKLSTSQMLTVIAVLI--ALPSLWLRDLSSISFLSV 209 (459)
Q Consensus 134 ~~~~~~~~~~~~~~~g~~~~y~i~~~~-~l~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~--~~pl~~~~~l~~l~~~s~ 209 (459)
+.+++..+..+................ .....+.... ..+..........+.++..+. .+...-.+.++..+.++.
T Consensus 83 ~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~i~~ 162 (496)
T PRK15238 83 KFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGINKIAKVTS 162 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence 998887766544433322111110000 0011111110 000000001112221222222 222333456666666665
Q ss_pred HHHHHHHH----HHHH-hhhhhhccCc-ccCC------CCCcccC---CchhhHHHHHhhhcccceeccchhhhccCCcc
Q 042581 210 GGILMSVL----IFLS-VAFTAIFGGV-KANH------RIPVLNL---HKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK 274 (459)
Q Consensus 210 ~~~~~~~~----~~~~-~~~~~~~~~~-~~~~------~~~~~~~---~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~ 274 (459)
++....+. .+++ .++.....+. ..+. +.+..++ .++..++....|+|.|.+.+....+|+|||+|
T Consensus 163 ~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~ 242 (496)
T PRK15238 163 IGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKTENPEK 242 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhccCCCc
Confidence 43322221 1111 1111111111 0000 0000111 24566778889999999999999999999985
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHH
Q 042581 275 -FTKVSIVSFTLVTALNTALGFMGT 298 (459)
Q Consensus 275 -~~~~~~~~~~~~~~~Y~~~g~~gy 298 (459)
.+|++..+...+.++|.+..++..
T Consensus 243 ~~p~ai~~~~~~~~~~y~l~~~~~~ 267 (496)
T PRK15238 243 NFPKGIIIAAIVISIGYSLAIFLWG 267 (496)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998655443
No 51
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.46 E-value=8.6e-11 Score=119.53 Aligned_cols=231 Identities=13% Similarity=0.188 Sum_probs=130.3
Q ss_pred CCCCchHHHHHHHHHhhhhhccchhHHHHhhhchHHHHHHHHHHHH-HHHHHHHHHHHhhhCC-CCCCHHHHHHHHhchh
Q 042581 57 HAGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWASAFLLIGLGVI-CAYSAHLLGKCLDKNP-KSRSYIDIGQHAFGRK 134 (459)
Q Consensus 57 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~~~~~~~~~~-~~~~~~~l~~~~~~~~-~~~~y~~~~~~~~G~~ 134 (459)
+++.+.++.++..+..+. ++..+| .+++.|+-.+..+++.+++ ....+....|.+...| +.+.....+++++|++
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G~~ 79 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYP-TFATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLGER 79 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccCcc
Confidence 567888888887777775 457888 4677886555555554444 4567888899988765 5678888999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccch-hhHHHHHHHHHHHhhcccCCCCChhHHHHHHHH
Q 042581 135 GRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLST-SQMLTVIAVLIALPSLWLRDLSSISFLSVGGIL 213 (459)
Q Consensus 135 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 213 (459)
.+++..+..++.......+........+.........+. .. ......+.....+.+...+..+....++.++.+
T Consensus 80 ~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~~~~~-----~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i~~~ 154 (507)
T TIGR00910 80 FGFAAIFFGWFQIAIGFIPMIYFILGALSYILKFPALNE-----DPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAGFF 154 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcc-----CcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999888887776543322222111111222211111000 00 111111122222222223444444444433322
Q ss_pred -HHHH---HHHHhhhhhhccCcccCC----CCCcccCC--chhhHHHHHhhhcccceeccchhhhccCCcc-chhHHHHH
Q 042581 214 -MSVL---IFLSVAFTAIFGGVKANH----RIPVLNLH--KIPHISGLYIFSYAGHIVFPNLYKAMKDPSK-FTKVSIVS 282 (459)
Q Consensus 214 -~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~-~~~~~~~~ 282 (459)
.... .++.+.......+.+... .....++. +....+..++|+|.|.+.+....+|+|||+| ++|++..+
T Consensus 155 ~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~ 234 (507)
T TIGR00910 155 AGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILL 234 (507)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHH
Confidence 1111 111111111122111110 00111222 2334555578999999999999999999985 99999999
Q ss_pred HHHHHHHHHHHHH
Q 042581 283 FTLVTALNTALGF 295 (459)
Q Consensus 283 ~~~~~~~Y~~~g~ 295 (459)
..++.++|.+..+
T Consensus 235 ~i~~~~l~~l~~~ 247 (507)
T TIGR00910 235 MIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999986544
No 52
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.37 E-value=2.2e-12 Score=131.00 Aligned_cols=231 Identities=15% Similarity=0.204 Sum_probs=158.9
Q ss_pred HHHHhhhhhccch-hHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchhhHhHHHHHHHH
Q 042581 68 NMAGMLIGLGQLS-TPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGRAAAATFIYL 145 (459)
Q Consensus 68 ~l~~~~iG~Gil~-lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~~~~ 145 (459)
..+++++|+|++. .+.+..+.|.. .++..++.+++....+..+.|..++.|+..++.+++++.+||..++..++.+++
T Consensus 5 ~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw~y~~ 84 (478)
T PF00324_consen 5 ISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGWAYWL 84 (478)
T ss_pred eeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeHHHHH
Confidence 3567899999855 67889999987 778889999999999999999999999989999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhhhhhh--ccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHhh
Q 042581 146 EIFMALVSYTILLHDNLITV--FSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMSVLIFLSVA 223 (459)
Q Consensus 146 ~~~g~~~~y~i~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~ 223 (459)
.............+..++.+ .++.+..+.+. . .+..+..+++..+.+ .+.+........-....+..++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~i~~~~~~~l~~-~gv~~~~~~~~~~~~i~~~~li~~i 158 (478)
T PF00324_consen 85 SYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWG----I-LIAIIFILLITLLNL-FGVRVSGKIEFILTIIKLIALIAFI 158 (478)
T ss_pred HHHHHHHhhhhhhhhhhcccccccccccccccc----c-hhhhhhhhhhhhhhh-hhhhccchHHHHHHHHhhhHhhhhh
Confidence 88888888888777777666 33332111110 0 222333333332322 2333333333222221211111111
Q ss_pred hhh----hcc-CcccC----C------CCC-------cccCCchhhHHHHHhhhcccceeccchhhhccCCcc-chhHHH
Q 042581 224 FTA----IFG-GVKAN----H------RIP-------VLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK-FTKVSI 280 (459)
Q Consensus 224 ~~~----~~~-~~~~~----~------~~~-------~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~-~~~~~~ 280 (459)
... ... +.... . ..+ ..++.++..++...+++|.|.+.+....+|.|||+| .+|++.
T Consensus 159 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~ 238 (478)
T PF00324_consen 159 IVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATL 238 (478)
T ss_pred hhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhh
Confidence 111 111 11111 0 011 123667899999999999999999999999999996 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCC
Q 042581 281 VSFTLVTALNTALGFMGTKLFGPG 304 (459)
Q Consensus 281 ~~~~~~~~~Y~~~g~~gy~~fg~~ 304 (459)
.++....++|++.....-...+.+
T Consensus 239 ~~~~~~~v~y~~~~~~~~~~~~~~ 262 (478)
T PF00324_consen 239 LSVLRIGVFYVLTSYALTLAVPYD 262 (478)
T ss_pred hhhhhhhhhhhhhhhhcccccCcc
Confidence 999999999998887766666644
No 53
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=99.14 E-value=1.4e-09 Score=92.02 Aligned_cols=215 Identities=17% Similarity=0.268 Sum_probs=148.0
Q ss_pred CCCchHHHHHHHHHhhhhhccchhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhh------------C-------
Q 042581 58 AGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDK------------N------- 117 (459)
Q Consensus 58 ~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~------------~------- 117 (459)
+..|...+.....|-++|+|-|++|.+|+.+||+ ++.++.+.++++..+..++.++... .
T Consensus 10 elysq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd 89 (319)
T KOG3832|consen 10 ELYSQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDD 89 (319)
T ss_pred chhhhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhcccc
Confidence 3455666788899999999999999999999998 9999999999999999999885320 0
Q ss_pred ---------------------CC----------------CCCHHHHHHHHhchhhHhHHHHHHHHHHHHHHHHHHHHHHh
Q 042581 118 ---------------------PK----------------SRSYIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHD 160 (459)
Q Consensus 118 ---------------------~~----------------~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~ 160 (459)
|. ....+|++...|.|.+-.+..++++++.+|-...|....-.
T Consensus 90 ~stasd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpf 169 (319)
T KOG3832|consen 90 ESTASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPF 169 (319)
T ss_pred ccccCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCch
Confidence 00 11236778888999999999999999999999999876655
Q ss_pred hhhhhccCC---------ccCc--c----ccc----cchhhHH-HHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHH
Q 042581 161 NLITVFSGT---------SLDL--S----WAK----LSTSQML-TVIAVLIALPSLWLRDLSSISFLSVGGILMSVLIFL 220 (459)
Q Consensus 161 ~l~~~~~~~---------~~~~--~----~~~----~~~~~~~-~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~ 220 (459)
...++.... .+.. . |.. .+..+.+ .+.+.++.+|+.+. +++..++++++..+..+....
T Consensus 170 s~m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~ 248 (319)
T KOG3832|consen 170 SAMNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFI 248 (319)
T ss_pred HhhhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhcc
Confidence 544442111 1100 0 111 1112333 34445555677765 888899999988887777655
Q ss_pred HhhhhhhccCc-ccCC-CCCcccCCchhhHHHHHhhhcccceeccchhhhccCCc
Q 042581 221 SVAFTAIFGGV-KANH-RIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPS 273 (459)
Q Consensus 221 ~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~ 273 (459)
..+...-.+.. +... ..+...+-++-..++..+|+|.+|..+|.....++.+.
T Consensus 249 ~g~~l~tmqaeedaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~ 303 (319)
T KOG3832|consen 249 LGISLATMQAEEDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKD 303 (319)
T ss_pred chhhhhhhhhcccccccCCccccccccccccchhhHHHHhhccCCCCCCCCeecc
Confidence 54443322211 1111 12223445666778889999999999999998887665
No 54
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.09 E-value=1.5e-07 Score=92.20 Aligned_cols=250 Identities=13% Similarity=0.022 Sum_probs=140.5
Q ss_pred ccCCCCCCchHHHHHHHHHhh-hhhcc-chhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHH-
Q 042581 53 ENNSHAGSSFAHAVINMAGML-IGLGQ-LSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQ- 128 (459)
Q Consensus 53 ~~~~~~~~s~~~~~~~l~~~~-iG~Gi-l~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~- 128 (459)
+.+.+|..+.++.+..-.+.+ .=.|+ -++.+.+...|.. -...+++.+....+++.-+.|.+...|..++..--+.
T Consensus 43 kqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsGgLy~waa~ 122 (550)
T KOG1289|consen 43 KQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSGGLYFWAAV 122 (550)
T ss_pred chhhhhhhhHHHHHHHHHHHhcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCCcHHHHHHH
Confidence 455567777665544333221 00122 3355556666766 4455788899999999999999999996444432222
Q ss_pred ---HHhchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChh
Q 042581 129 ---HAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSIS 205 (459)
Q Consensus 129 ---~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 205 (459)
.-+||...|++++...+-+.....+-....++.+.....-.+.+....+ .+.+.+.....++..+.-...-+.+.
T Consensus 123 lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~--~~~~~v~~ai~~v~~lln~~p~r~l~ 200 (550)
T KOG1289|consen 123 LAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTN--YHQFGVFEAILFVHGLLNSLPTRVLA 200 (550)
T ss_pred hcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccc--eEeehHHHHHHHHHHHHhcCCcHHHH
Confidence 3344555666666555544444444444455555555443333221110 11222222222222222222346677
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcc-Ccc--cCCC-------CCcccCC----chhhHHHHHhhhcccceeccchhhhccC
Q 042581 206 FLSVGGILMSVLIFLSVAFTAIFG-GVK--ANHR-------IPVLNLH----KIPHISGLYIFSYAGHIVFPNLYKAMKD 271 (459)
Q Consensus 206 ~~s~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~-------~~~~~~~----~~~~~~~~~~fsf~~~~~i~~i~~e~k~ 271 (459)
+++.+++...++.+++..+..... +.+ .+.. ....+|+ .+..++-...|.+.|.+..+++.+|.||
T Consensus 201 ~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~~n 280 (550)
T KOG1289|consen 201 RINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEETKN 280 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHhcc
Confidence 777777655555444433332221 111 1111 1112233 3445666788999999999999999999
Q ss_pred Cc-cchhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042581 272 PS-KFTKVSIVSFTLVTALNTALGFMGTKLFGPG 304 (459)
Q Consensus 272 p~-~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~ 304 (459)
++ +.+|++..+..+..++=..+-+.-...-+++
T Consensus 281 Ask~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D 314 (550)
T KOG1289|consen 281 ASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDD 314 (550)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 98 5899999998888887777766666666653
No 55
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=99.01 E-value=5.9e-07 Score=82.54 Aligned_cols=214 Identities=16% Similarity=0.075 Sum_probs=134.5
Q ss_pred HHHHHHHHhhhhhccchhHHHHh---hhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchhhHhHHH
Q 042581 64 HAVINMAGMLIGLGQLSTPYAIE---NGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGRAAAA 140 (459)
Q Consensus 64 ~~~~~l~~~~iG~Gil~lP~~~~---~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~ 140 (459)
+-.+..+++++|+|.=+=--.++ .-|+-|....++.+++...++..+.+..++.+. .+|.|.-++.+||+...+.|
T Consensus 7 ~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a-~~y~~~~~~v~~~~~~ki~d 85 (349)
T COG3949 7 RWAFAFIGTVVGAGFASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNA-TSYREILKYVSGPKFAKIID 85 (349)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc-cchHHHHHHHhhHHHHHHHH
Confidence 44566778999999665444444 455558888999999999999999999888876 99999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHH-HHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHH
Q 042581 141 TFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLT-VIAVLIALPSLWLRDLSSISFLSVGGILMSVLIF 219 (459)
Q Consensus 141 ~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~ 219 (459)
..+.+..++.++.-....+..+++.+.- ..|+. ++...++..+.+.++.+.+..++.+-+-......
T Consensus 86 ~~iif~lf~~~vVM~AGags~~~e~~~l------------P~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi~l 153 (349)
T COG3949 86 IIIIFFLFSTAVVMLAGAGSLLEEMFGL------------PYWIGALIIILLVLILLFLGRVEGIITVNGIITPFLIIIL 153 (349)
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHhCc------------cHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHHHHH
Confidence 9999999999998888888777665432 34554 4555555555556667777666655443333322
Q ss_pred HHhhh-hhhccCc-ccCCCC-CcccCCchhhHHHHHhhhc-ccceeccchhhhccCCccchhHHHHHHHHHHHHHHH
Q 042581 220 LSVAF-TAIFGGV-KANHRI-PVLNLHKIPHISGLYIFSY-AGHIVFPNLYKAMKDPSKFTKVSIVSFTLVTALNTA 292 (459)
Q Consensus 220 ~~~~~-~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~fsf-~~~~~i~~i~~e~k~p~~~~~~~~~~~~~~~~~Y~~ 292 (459)
..+.. +...+.. ....+. ...+|.. .+.+=..+.. .+...+.++-+||+++++..+....+-.+.+++-.+
T Consensus 154 ~~v~~~~~f~~~~~~a~~~~~~~~~W~~--~~~~Y~alNi~~~~avLv~lg~~~~~~~~~~~g~l~gglIlgvl~~l 228 (349)
T COG3949 154 VLVTLSFQFTNLGNAAQIVLTKQGNWKA--SAVGYGALNILVAVAVLVPLGGRMESRKVSGIGGLIGGLILGVLLFL 228 (349)
T ss_pred HHHHHHHHHhhccchhhhcCCcCCChHH--HHHhhhhHHHHhHhHhhhhhcccccccchhhhhhhhhhHHHHHHHHH
Confidence 22222 2222211 111111 1122221 1111111111 133445677799999997665555444444443333
No 56
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.90 E-value=2.9e-06 Score=85.17 Aligned_cols=342 Identities=11% Similarity=-0.003 Sum_probs=187.5
Q ss_pred CCCCchHHHHHHHHHhhhhhccchhHHHHhh--hchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhch
Q 042581 57 HAGSSFAHAVINMAGMLIGLGQLSTPYAIEN--GGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGR 133 (459)
Q Consensus 57 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~--~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~ 133 (459)
+|+.++++-...-.+..+...-+.+...... .++. +++..++..++...-..+......|++ .++..+.|..||+
T Consensus 11 ~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~G--l~~~v~sR~~FG~ 88 (442)
T TIGR00800 11 ERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYG--LPFPVLSRASFGI 88 (442)
T ss_pred cCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhC--CCcchhhhhhhhh
Confidence 4455666666666655555444444433333 3344 565555555555555555556666665 5888899999999
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccc--cc-hhhHHHHHHHHHHHhhcccCCCCChhHHHHH
Q 042581 134 KGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAK--LS-TSQMLTVIAVLIALPSLWLRDLSSISFLSVG 210 (459)
Q Consensus 134 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~--~~-~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 210 (459)
+|..+..++..+...|.........++.+..+++...+...... .+ ......++...+.+++......+..+.....
T Consensus 89 ~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~~~~ 168 (442)
T TIGR00800 89 YGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHLFEWL 168 (442)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999999999999999998888776554322100000 00 0122234445555555555555555556666
Q ss_pred HHHHHHHHHHHhhhhhhccC-c-ccCCCC----CcccCCchhhHHHHHhhh-cccceeccchhhhccCCccchhHHHHHH
Q 042581 211 GILMSVLIFLSVAFTAIFGG-V-KANHRI----PVLNLHKIPHISGLYIFS-YAGHIVFPNLYKAMKDPSKFTKVSIVSF 283 (459)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~----~~~~~~~~~~~~~~~~fs-f~~~~~i~~i~~e~k~p~~~~~~~~~~~ 283 (459)
+.......+...++.....+ . +..+.. +......+..++...+-. -..-.+.+...+.+|+|++-.+...+++
T Consensus 169 a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~~~~~~~~~~~ 248 (442)
T TIGR00800 169 AVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKKTAIWGQFLAL 248 (442)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCccchHHHHHHHH
Confidence 65544444444433333221 1 111111 111222344444443333 2344578999999999998777788888
Q ss_pred HHHHHHHHHHHHHHHhh----cCCCCh--hhHhhcCCCchhH--HH---HHHHHH-HHHhhhhccchhhhhHHHHHhhCC
Q 042581 284 TLVTALNTALGFMGTKL----FGPGVN--SQITLSMPQHLVV--TK---IALWAT-VLTPMTKYALEFAPLAIQLENHLP 351 (459)
Q Consensus 284 ~~~~~~Y~~~g~~gy~~----fg~~~~--~~il~~~~~~~~~--~~---i~~~~~-~~~~~~s~p~~~~~~~~~~~~~~~ 351 (459)
....+....+|+.+-.. +|+... .+....+...... .. ...++. .....++-....++....+.+.++
T Consensus 249 ~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~~~vl~~~~t~~~~N~ys~~l~l~~l~~ 328 (442)
T TIGR00800 249 PGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGLTYAVGARAVFGFGFCFVVAQLSTNISANSYSAGLDIAALLP 328 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHhCc
Confidence 88888888888877765 775432 2333444321111 10 111222 222224556667888888888776
Q ss_pred CCccchhhHHHHHHHHHHHHH-HHHHHHHhCchHHHHHHHhhhHhHhHHHHhh
Q 042581 352 ISLSARSKMMIRSSVGSLLLI-IILTLALSLPYFQYVLSLTGSLVSICICLIF 403 (459)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~-~~~~ia~~~~~~~~~~~~~Ga~~~~~~~~il 403 (459)
+..+. ++.. .+...+... ....+..+.+.+..++++.|+...+.....+
T Consensus 329 ~~~~~--~r~~-~i~~ii~~~~~~~~~~~~~~~~~~FL~~lg~~~~P~~gI~l 378 (442)
T TIGR00800 329 KYIKI--KRGS-LICAIIALLICPWNLYNSSSKFTTFLSSIGGFLSPIAGVMI 378 (442)
T ss_pred Ccccc--chHH-HHHHHHHHHhccHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence 54322 2211 111111111 1111112223566788888877777665543
No 57
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.87 E-value=5.6e-06 Score=80.78 Aligned_cols=266 Identities=16% Similarity=0.111 Sum_probs=168.0
Q ss_pred HHHHHHHHhchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCC
Q 042581 123 YIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLS 202 (459)
Q Consensus 123 y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~ 202 (459)
--.++|..||.++.++..+++.+.+.|......+..++..... +.. +..++.++..+++...+.. ..+
T Consensus 83 qmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~-~~~----------~~~~~ili~g~l~~l~~if-G~r 150 (442)
T COG1457 83 QMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG-TGL----------PVWAGILIIGVLMTLVTIF-GYR 150 (442)
T ss_pred hheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-CCC----------cHHHHHHHHHHHHHHHHHH-hHH
Confidence 3456788999999999999999999999999999999862222 111 1334444444444443333 666
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhhhcc--CcccCCCCCcccCCchhhHHHHHhhhccccee-ccchhhhccCCc--cchh
Q 042581 203 SISFLSVGGILMSVLIFLSVAFTAIFG--GVKANHRIPVLNLHKIPHISGLYIFSYAGHIV-FPNLYKAMKDPS--KFTK 277 (459)
Q Consensus 203 ~l~~~s~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~-i~~i~~e~k~p~--~~~~ 277 (459)
.+..++..+.......++..++..... ..+.....++.++.++..+++.++-.+..+.. .....+.+|+|+ |.-.
T Consensus 151 ~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~ 230 (442)
T COG1457 151 ALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFL 230 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHH
Confidence 666666666655555555555444432 12222233456666777777776666655544 788888899888 6667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCC-hhhHhhcCCCchhHHHHHHHHHHHHhhhhccchhhhhHHHHHhhCCCCccc
Q 042581 278 VSIVSFTLVTALNTALGFMGTKLFGPGV-NSQITLSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPISLSA 356 (459)
Q Consensus 278 ~~~~~~~~~~~~Y~~~g~~gy~~fg~~~-~~~il~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~ 356 (459)
....+..+...+-..+|...-.+-|+.. ..+....+.+ +...+.+...+..+++-...+|+..-.+.+..++-.
T Consensus 231 ~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~l~-- 305 (442)
T COG1457 231 AAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNANNLYSAGLSFANIIPKLS-- 305 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhhhh--
Confidence 7788888888888889999888888765 3444444443 445667777888888888888888888887765421
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH--hCchHHHHHHHhhhHhHhHHHHhhhhHHH
Q 042581 357 RSKMMIRSSVGSLLLIIILTLAL--SLPYFQYVLSLTGSLVSICICLIFPCAFY 408 (459)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~ia~--~~~~~~~~~~~~Ga~~~~~~~~ilP~l~~ 408 (459)
|..+.. ...+. ....+.+.. +..+++.++.+.|+.........+-=.+.
T Consensus 306 k~~~~v--~~~v~-igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~iad~~~ 356 (442)
T COG1457 306 KVTRVV--IAGVG-IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVMIADYFI 356 (442)
T ss_pred hHHHHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 11111 111111111 45678888888887776666555433333
No 58
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.86 E-value=8.2e-06 Score=80.16 Aligned_cols=293 Identities=13% Similarity=0.080 Sum_probs=171.0
Q ss_pred hchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 042581 88 GGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVF 166 (459)
Q Consensus 88 ~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~ 166 (459)
.++. +++..++..++...-.-+......|++ -++.-+.|..||++|..+..+...+...|.-.......++.++.+.
T Consensus 26 L~~~~ai~aiilG~~i~~~~~~l~~~~G~~~G--l~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~ 103 (386)
T TIGR02358 26 LGLTRGLLAILLGHLVGVLLLSAAGVIGADTG--LSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLG 103 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--cCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 555555544444444445555555655 5889999999999999999999999999999999999999998887
Q ss_pred cCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHhhhhhhcc-CcccCCCCCcccCCch
Q 042581 167 SGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMSVLIFLSVAFTAIFG-GVKANHRIPVLNLHKI 245 (459)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 245 (459)
+...+.. ....+..+..++..+.+ ....+.++++..+.........+...+....+ +.+...+ +..+ ..+
T Consensus 104 ~~~~~~~------~~~~~~~i~~~l~~~~~-~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~-~s~ 174 (386)
T TIGR02358 104 GRLFGEE------SPMLWILIVGILVTLWL-LSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELWN-RAGD-MSF 174 (386)
T ss_pred HHhcCCC------chHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcC-CCCC-ccH
Confidence 5431111 12223333333333333 34667777777777665555554444333222 1111111 1111 223
Q ss_pred hhHHHHHhhh-cccceeccchhhhccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHhhcCCCchhHHHHHH
Q 042581 246 PHISGLYIFS-YAGHIVFPNLYKAMKDPSKFTKVSIVSFTLVTALNTALGFMGTKLFGPGVNSQITLSMPQHLVVTKIAL 324 (459)
Q Consensus 246 ~~~~~~~~fs-f~~~~~i~~i~~e~k~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~i~~ 324 (459)
..++....-. -..-...++..+..|+|+|.-+...++..+...+...+|.....+.++....++...++ ....+.
T Consensus 175 ~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~d~~~~~~~~g----~~~~~~ 250 (386)
T TIGR02358 175 AVAVELVIAMPLSWLPLIADYTRFARNPRHVFLGTVLGYFIGSCWMYFLGLAVTLATGQTDIISILAGAG----LGIPAL 250 (386)
T ss_pred HHHHHHHHHHHHHHHHHccchhhhcCCCcceehHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhcc----HHHHHH
Confidence 3333332211 12223489999999999998888899999999999999988877776643333333221 112333
Q ss_pred HHHHHHhhhhccchhhhhHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHH--hCchHHHHHHHhhhHhHhHHHHh
Q 042581 325 WATVLTPMTKYALEFAPLAIQLENHLPISLSARSKMMIRSSVGSLLLIIILTLAL--SLPYFQYVLSLTGSLVSICICLI 402 (459)
Q Consensus 325 ~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~--~~~~~~~~~~~~Ga~~~~~~~~i 402 (459)
+...+..+++-....++....+.+.+++-. +.+... +. ..+..+++. ..+.+..++++.|....+....+
T Consensus 251 ~~~~l~~~~~n~~N~ys~~l~l~~l~~~~~--~~~~~~--i~----~ii~~~l~~~~~~~~f~~FL~~lg~~~~P~~gI~ 322 (386)
T TIGR02358 251 LIILLSTVTTTFMDIYSAAISTGNLLPRLK--VKHLAI--GV----GVLGTLIALLFPVDKYENFLLLIGSVFAPLYAVV 322 (386)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhc--chHHHH--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566667777888877777764332 111111 11 111122221 23567788888777776666544
Q ss_pred h
Q 042581 403 F 403 (459)
Q Consensus 403 l 403 (459)
+
T Consensus 323 i 323 (386)
T TIGR02358 323 F 323 (386)
T ss_pred H
Confidence 3
No 59
>PRK11375 allantoin permease; Provisional
Probab=98.70 E-value=5.5e-05 Score=76.50 Aligned_cols=342 Identities=12% Similarity=0.026 Sum_probs=175.2
Q ss_pred CCCCCCchHHHHHHHHHhhhhhccchhHHH-H-hhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHh
Q 042581 55 NSHAGSSFAHAVINMAGMLIGLGQLSTPYA-I-ENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAF 131 (459)
Q Consensus 55 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~-~-~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~ 131 (459)
+++|+-++++-+..-.+..+..+.+.+--+ + ...++. +++..++..++...-+.+......+++ .++.-+.|..|
T Consensus 22 ~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~G--l~~~v~sR~sF 99 (484)
T PRK11375 22 QSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYG--VPFAMILRASY 99 (484)
T ss_pred ccccCCcHHHHHHHHHHHhccHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHhcccccccC--CChhHhHHHHH
Confidence 334556655554444433333222211111 1 123344 555555555555555555556566655 68999999999
Q ss_pred chhhHhHHHHHHH-HHHHHHHHHHHHHHHhhhhhhccCC----c---cCccccccchhhHH-HHHHHHHHHhhcccCCCC
Q 042581 132 GRKGRAAAATFIY-LEIFMALVSYTILLHDNLITVFSGT----S---LDLSWAKLSTSQML-TVIAVLIALPSLWLRDLS 202 (459)
Q Consensus 132 G~~~~~~~~~~~~-~~~~g~~~~y~i~~~~~l~~~~~~~----~---~~~~~~~~~~~~~~-~~i~~~~~~pl~~~~~l~ 202 (459)
|++|..+..+... +..++.........++.+..++... . ...+........+. .++..++..++. ....+
T Consensus 100 G~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~-~~g~~ 178 (484)
T PRK11375 100 GVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIG-FGGGK 178 (484)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHH-HcCHH
Confidence 9999888888874 5666777777777777766543221 1 01111111111222 334445555554 45667
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhhhcc-CcccC----CCCCc--c-cCCchhhHHHHHhhhcc-cceeccchhhhccCCc
Q 042581 203 SISFLSVGGILMSVLIFLSVAFTAIFG-GVKAN----HRIPV--L-NLHKIPHISGLYIFSYA-GHIVFPNLYKAMKDPS 273 (459)
Q Consensus 203 ~l~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~--~-~~~~~~~~~~~~~fsf~-~~~~i~~i~~e~k~p~ 273 (459)
.++++..++.......++.+.+..... +.+.. +.... . ....+..++...+=++. .-.+.|...+..|+++
T Consensus 179 ~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~~ 258 (484)
T PRK11375 179 VLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSFR 258 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcccCChh
Confidence 777776666555444333333322222 11100 00000 0 01123333333333444 3458999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHH----HhhcCCCCh--hhHhhcCCCchhHHHHHHHHHHHHhhhhc-cchhhhhHHHH
Q 042581 274 KFTKVSIVSFTLVTALNTALGFMG----TKLFGPGVN--SQITLSMPQHLVVTKIALWATVLTPMTKY-ALEFAPLAIQL 346 (459)
Q Consensus 274 ~~~~~~~~~~~~~~~~Y~~~g~~g----y~~fg~~~~--~~il~~~~~~~~~~~i~~~~~~~~~~~s~-p~~~~~~~~~~ 346 (459)
+-.+...+++.+...+...+|+.. ...+|+... .+++..+.+ .....++.+...+..+.+- .-..++....+
T Consensus 259 ~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~-~~~~~~a~l~~v~a~~~tN~~~N~ys~~~~l 337 (484)
T PRK11375 259 AQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDS-LFASFFAVLVILMTTISTNATGNIIPAGYQI 337 (484)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHhhcccHHHHH
Confidence 877777777777776665555443 445654432 333444432 2333334455555555553 35778888888
Q ss_pred HhhCCCCccchhhHHHHHHHHHH-HHHHHHHHHHhCchHHHHHHHhhhHhHhHHHHhh
Q 042581 347 ENHLPISLSARSKMMIRSSVGSL-LLIIILTLALSLPYFQYVLSLTGSLVSICICLIF 403 (459)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ia~~~~~~~~~~~~~Ga~~~~~~~~il 403 (459)
.+.+++..+.+ +.. ++..++ .+.....+-.....+..++++.|++.++....++
T Consensus 338 ~~l~pk~i~~~--~~~-~i~~iig~~~~pw~~~~~~~~f~~FL~~lg~~l~Pi~gImi 392 (484)
T PRK11375 338 AALAPTKLTYK--NGV-LIASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVMM 392 (484)
T ss_pred HHhCcCccchh--hHH-HHHHHHHHHhccHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887654322 211 011111 1111111111112377888888888777666554
No 60
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.69 E-value=6.7e-05 Score=74.64 Aligned_cols=150 Identities=14% Similarity=0.051 Sum_probs=106.0
Q ss_pred CCCCchHHHHHHHHHhhhhhc-cchhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhch-h
Q 042581 57 HAGSSFAHAVINMAGMLIGLG-QLSTPYAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGR-K 134 (459)
Q Consensus 57 ~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~-~ 134 (459)
.|+.+++...+.+..+.+|++ .++.|....+.|+.+....+..........+++.+..++.+ ..+..|+.++-||+ .
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg~~~ 80 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNG-AYTMPEYLEKRFGKRI 80 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHhCchH
Confidence 477888999999999988886 57799777777865332222233333344555556555555 49999999999998 5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHH
Q 042581 135 GRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILM 214 (459)
Q Consensus 135 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 214 (459)
.+.+..+...+..+..........+..++.+++. +...-.++..++++..+....++...+...+..+.
T Consensus 81 ~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi-----------~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i 149 (407)
T TIGR00813 81 LRGLSVLSLILYIFLYMSVDLFSGALLIELITGL-----------DLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVI 149 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 7777777777788888888888888888877542 12333455566666777788999999988888665
Q ss_pred HHHH
Q 042581 215 SVLI 218 (459)
Q Consensus 215 ~~~~ 218 (459)
.+..
T Consensus 150 ~~~~ 153 (407)
T TIGR00813 150 MILG 153 (407)
T ss_pred HHHH
Confidence 5443
No 61
>PRK12488 acetate permease; Provisional
Probab=98.63 E-value=0.00028 Score=72.71 Aligned_cols=153 Identities=13% Similarity=0.075 Sum_probs=104.8
Q ss_pred CCCCchHHHHHHHHHhhhhhc-cchhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhc-hh
Q 042581 57 HAGSSFAHAVINMAGMLIGLG-QLSTPYAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFG-RK 134 (459)
Q Consensus 57 ~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G-~~ 134 (459)
.|+.+++...+.+..+.++++ .++.|......|+.+....+...+-......++.+-.++.+. .+..|+-++=|| |+
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~g~~~g~~~~~~~~a~~lr~~g~-~T~~d~l~~Rf~s~~ 144 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDGLLYALGVLAGWPIILFLIAERLRNLGK-YTFADVVSYRLAQGP 144 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHCCC-cchHHHHHHHcCCCc
Confidence 578899999999999999887 478997777778654322221111111123445555556555 899999888887 66
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHH
Q 042581 135 GRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILM 214 (459)
Q Consensus 135 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 214 (459)
.+.+..+...+..+.....-....+..++.+++. +...-.++..++++..+....++...+...+..+.
T Consensus 145 ~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi-----------~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~i 213 (549)
T PRK12488 145 VRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGI-----------SYLYAVVIVGALMVLYVTFGGMLATTWVQIIKAVL 213 (549)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence 8888888877777777778888888887777532 12333556666777778888999999999888655
Q ss_pred HHHHHHH
Q 042581 215 SVLIFLS 221 (459)
Q Consensus 215 ~~~~~~~ 221 (459)
.+...++
T Consensus 214 m~~~~i~ 220 (549)
T PRK12488 214 LLSGTSF 220 (549)
T ss_pred HHHHHHH
Confidence 5444333
No 62
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.60 E-value=8.1e-05 Score=74.08 Aligned_cols=154 Identities=13% Similarity=0.098 Sum_probs=95.2
Q ss_pred CCCCchHHHHHHHHHhhhhhc-cchhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchhh
Q 042581 57 HAGSSFAHAVINMAGMLIGLG-QLSTPYAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKG 135 (459)
Q Consensus 57 ~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~~ 135 (459)
.|+.+++...+.+..+.+|++ +++.|....+.|+.+....+...........++.+-.++.+. .+..|+-++-||++.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~T~~e~~~~Ryg~~~ 83 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRRSGA-VTIPEYLEKRYGSKA 83 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT---SHHHHHHHHT-HHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcccch-hhhhhhhhhhcCCch
Confidence 477889999999999999886 578897777778653222233333333334455555555554 899999999999988
Q ss_pred --HhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHH
Q 042581 136 --RAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGIL 213 (459)
Q Consensus 136 --~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 213 (459)
+.+..+...+.............+..++.+++. +.....++..++++..+..-.++...+...+..+
T Consensus 84 ~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi-----------~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~ 152 (406)
T PF00474_consen 84 LLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGI-----------PYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGV 152 (406)
T ss_dssp -HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHTTCTT------SHHHHHHH
T ss_pred hhhhhcccccchhhhhhhhccccccccchhhccch-----------hhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHH
Confidence 666666666667777778888888888877642 1334455666777778888889988888888765
Q ss_pred HHHHHHHHh
Q 042581 214 MSVLIFLSV 222 (459)
Q Consensus 214 ~~~~~~~~~ 222 (459)
..+...+++
T Consensus 153 i~~~~~~~~ 161 (406)
T PF00474_consen 153 IMIIGAIVV 161 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 554444333
No 63
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.59 E-value=0.00055 Score=69.47 Aligned_cols=232 Identities=10% Similarity=-0.006 Sum_probs=133.2
Q ss_pred CCCCCchHHHHHHHHHhhhhhcc-chhHHHHhhhchH-HHHHH--HHHHHHH-HHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 042581 56 SHAGSSFAHAVINMAGMLIGLGQ-LSTPYAIENGGWA-SAFLL--IGLGVIC-AYSAHLLGKCLDKNPKSRSYIDIGQHA 130 (459)
Q Consensus 56 ~~~~~s~~~~~~~l~~~~iG~Gi-l~lP~~~~~~G~~-g~~~~--~~~~~~~-~~~~~~l~~~~~~~~~~~~y~~~~~~~ 130 (459)
-.|+.+++...+.+..+.+|++. ++.|-...+.|+. ..... ...+.+. ..-+..+.+..++.+. .|..|+-++-
T Consensus 38 agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~T~~e~l~~R 116 (471)
T TIGR02119 38 GGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYNA-ITINDVLKAR 116 (471)
T ss_pred eCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHH
Confidence 35789999999999999999874 7788666666753 11111 0111111 1112233344455554 9999999999
Q ss_pred hchh-hHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHH
Q 042581 131 FGRK-GRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSV 209 (459)
Q Consensus 131 ~G~~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 209 (459)
||++ .+.+..+...+..++...+.....+..++.+++- +.....++..++++..+....++...+...
T Consensus 117 yg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi-----------~~~~~iii~~~iv~iYt~~GG~~av~~td~ 185 (471)
T TIGR02119 117 YNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL-----------SYLTALFIFSSSVLIYTTFGGFRAVALTDA 185 (471)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9954 5777777777777777777777788877777542 123334555666777777889999999988
Q ss_pred HHHHHHHHHHHHhhhhhhcc--Ccc--------cCCC-CCcccCCc-----hhhHH-HHHhhhcccceeccchhhhccCC
Q 042581 210 GGILMSVLIFLSVAFTAIFG--GVK--------ANHR-IPVLNLHK-----IPHIS-GLYIFSYAGHIVFPNLYKAMKDP 272 (459)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~--~~~--------~~~~-~~~~~~~~-----~~~~~-~~~~fsf~~~~~i~~i~~e~k~p 272 (459)
+..+..+...+++......+ +.+ .+++ ..+.+..+ ....+ ....+...+.+....-.-..|++
T Consensus 186 iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~~aak~~ 265 (471)
T TIGR02119 186 IQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAVRCMSYKDS 265 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHHHHHhcCCH
Confidence 88665554444333332221 110 0000 00111111 11111 11222333333333334446677
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHh
Q 042581 273 SKFTKVSIVSFTLVTALNTALGFMGTK 299 (459)
Q Consensus 273 ~~~~~~~~~~~~~~~~~Y~~~g~~gy~ 299 (459)
|+.+|...++..+...++....+.|..
T Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~G~~ 292 (471)
T TIGR02119 266 KAMHRAMIIGTIVVGIIMLGMHLAGVL 292 (471)
T ss_pred HHHhhhHhHHHHHHHHHHHHHHHHHHh
Confidence 778888887776666666655555543
No 64
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.58 E-value=0.0004 Score=70.67 Aligned_cols=229 Identities=11% Similarity=0.023 Sum_probs=129.1
Q ss_pred CCCCchHHHHHHHHHhhhhhc-cchhHHHHhhhchHH-HHH---HHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHh
Q 042581 57 HAGSSFAHAVINMAGMLIGLG-QLSTPYAIENGGWAS-AFL---LIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAF 131 (459)
Q Consensus 57 ~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g-~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~ 131 (459)
.|+.+++...+.+..+.+|++ .++.|....+.|+.. ... .....+...+-+..+.+..++.+. .+..|+.++-|
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~-~T~~e~l~~Ry 118 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYNA-VTLNDMLRARY 118 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHh
Confidence 577889999999989888885 577886666667531 111 111111112223334444566554 99999999999
Q ss_pred chh-hHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHH
Q 042581 132 GRK-GRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVG 210 (459)
Q Consensus 132 G~~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 210 (459)
|++ .+.+..+...+..+......+...+..++.+++. +.....++..++++..+....++...+...+
T Consensus 119 g~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi-----------~~~~~iii~~~iv~iYt~~GGl~av~~TD~i 187 (483)
T PRK09442 119 QSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGI-----------SYETGLLIFGITVALYTAFGGFRAVVLTDAL 187 (483)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 864 5666666666666666677777777777777542 1233345556666777888899999988888
Q ss_pred HHHHHHHHHHHhhhhhhcc--Cc-------c-cCCC-CCcc---cCCchhhHH---HHHhhhcccceeccchhhhccCCc
Q 042581 211 GILMSVLIFLSVAFTAIFG--GV-------K-ANHR-IPVL---NLHKIPHIS---GLYIFSYAGHIVFPNLYKAMKDPS 273 (459)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~--~~-------~-~~~~-~~~~---~~~~~~~~~---~~~~fsf~~~~~i~~i~~e~k~p~ 273 (459)
..+..+...+++.+..... +. + .+++ ..+. ++....... -...+...+.+....=.-..|++|
T Consensus 188 Q~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aaks~~ 267 (483)
T PRK09442 188 QGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTAVRCMSYKDSK 267 (483)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHHHHHHHcCCHH
Confidence 8665554443333222211 11 0 0000 0111 111111111 112223333333322223366777
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHH
Q 042581 274 KFTKVSIVSFTLVTALNTALGFMG 297 (459)
Q Consensus 274 ~~~~~~~~~~~~~~~~Y~~~g~~g 297 (459)
+.+|...++......+++...+.|
T Consensus 268 ~a~~~~~~~~~~~~~~~~~~~~~G 291 (483)
T PRK09442 268 ALHRGIIIGTIVVGFLMFGMHLAG 291 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888776666766555555
No 65
>PRK11017 codB cytosine permease; Provisional
Probab=98.58 E-value=0.00017 Score=71.47 Aligned_cols=288 Identities=16% Similarity=0.099 Sum_probs=150.6
Q ss_pred hchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 042581 88 GGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVF 166 (459)
Q Consensus 88 ~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~ 166 (459)
.++. +++..++..++...-..+......|++ .++..+.|..||.+|..+..+...+...+.........+..++...
T Consensus 39 Ls~~~ai~aiilG~~i~~~~~~l~~~~G~k~G--~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~ 116 (404)
T PRK11017 39 LSFVDFLLAVLIGNLLLGIYTAALGYIGAKTG--LSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKAT 116 (404)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--cCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3444 555555544444444444555556655 6899999999999999999998888888877777777777666654
Q ss_pred cCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHhhhhhhcc--CcccCCCCCcccCCc
Q 042581 167 SGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMSVLIFLSVAFTAIFG--GVKANHRIPVLNLHK 244 (459)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 244 (459)
+. + .....++..++..+.... ..+.+++++..+........+...+....+ +.+.....+..+...
T Consensus 117 ~~-~----------~~~~~~i~~~l~~~~~~~-G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 184 (404)
T PRK11017 117 GL-D----------INLLIVLSGLLMTVTAYF-GISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLD 184 (404)
T ss_pred CC-C----------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCccc
Confidence 31 1 111233333444444332 345555555555443433333333222221 111101111112234
Q ss_pred hhhHHHHHhhhccc-ceeccchhhhccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHhhcCCCchhHHHHH
Q 042581 245 IPHISGLYIFSYAG-HIVFPNLYKAMKDPSKFTKVSIVSFTLVTALNTALGFMGTKLFGPGVNSQITLSMPQHLVVTKIA 323 (459)
Q Consensus 245 ~~~~~~~~~fsf~~-~~~i~~i~~e~k~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~i~ 323 (459)
+..++...+=.+.. -.+.++..+..|+|++.......++.+...+...+|...-...|+....+.... . . .....
T Consensus 185 ~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~~d~~~~~~~--~-~-~~~~~ 260 (404)
T PRK11017 185 FSAALTLVVGSFISGGTLTADFVRFGRSAKIAVLATMVAFFLGNSLMFIFGAAGAAVYGQADISDVMIA--Q-G-LLIPA 260 (404)
T ss_pred HHHHHHHHHHHHHHhHhcCCChHhhccCccceeehhHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHH--h-c-hHHHH
Confidence 55555544433333 467999999999988766777777777777777777776666665321121111 1 1 11123
Q ss_pred HHHHHHHhhhhccchhhhhHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHhhhHhHhHHHHh
Q 042581 324 LWATVLTPMTKYALEFAPLAIQLENHLPISLSARSKMMIRSSVGSLLLIIILTLAL-SLPYFQYVLSLTGSLVSICICLI 402 (459)
Q Consensus 324 ~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~-~~~~~~~~~~~~Ga~~~~~~~~i 402 (459)
.+...+...++-....+...-.+.+..+. . ++.. ..+...+..+++. ...++..++++.|...++....+
T Consensus 261 l~~~~l~~~t~n~~~~ys~~l~~~~l~~~--~---~~~~----~ii~~vi~~~i~~~~~~~~~~FL~~lg~~l~P~~gI~ 331 (404)
T PRK11017 261 IVMLGLNIWTTNDNALYASGLGFCNITRL--S---SRTL----TVVNGIIGTVLALWLYNNFVGWLTLLGSAIPPVGGVI 331 (404)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhcC--c---chHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhh
Confidence 33334444444444444444444444311 1 1111 1111111222221 34677888888887666655544
No 66
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.48 E-value=0.0015 Score=67.34 Aligned_cols=149 Identities=10% Similarity=0.121 Sum_probs=98.7
Q ss_pred CCCCchHHHHHHHHHhhhhh-ccchhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhc-hh
Q 042581 57 HAGSSFAHAVINMAGMLIGL-GQLSTPYAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFG-RK 134 (459)
Q Consensus 57 ~~~~s~~~~~~~l~~~~iG~-Gil~lP~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G-~~ 134 (459)
.|+.+++...+.+..+.+++ ..++.|-.....|+-+....+...+-.....+++.+-.++.+. .+..|+.++=|| |.
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~~~~~~g~~~~~~i~~~~~a~~lrr~g~-~T~~d~l~~Rf~s~~ 144 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGLIYSLGFLVGWPIILFLIAERLRNLGR-YTFADVASYRLKQRP 144 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHcCCcc
Confidence 57788888888888887776 4688997777778654332221111111224555665566665 899999888786 55
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHH
Q 042581 135 GRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILM 214 (459)
Q Consensus 135 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 214 (459)
.+.+..+...+..+..........+..++.+++. +...-.++..+++...+....++...+...+..+.
T Consensus 145 ~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi-----------~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~i 213 (549)
T TIGR02711 145 IRILSACGSLVVVALYLIAQMVGAGKLIELLFGL-----------NYHVAVVLVGILMVMYVLFGGMLATTWVQIIKAVL 213 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 7777777666666666777777777777776542 12333556666677777788899888888887655
Q ss_pred HHH
Q 042581 215 SVL 217 (459)
Q Consensus 215 ~~~ 217 (459)
.+.
T Consensus 214 m~~ 216 (549)
T TIGR02711 214 LLF 216 (549)
T ss_pred HHH
Confidence 444
No 67
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=98.46 E-value=3.3e-06 Score=84.92 Aligned_cols=340 Identities=14% Similarity=0.056 Sum_probs=162.7
Q ss_pred CCCCCchHHHHHHHHHhhhhhccchhHHHHhhh--chH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhc
Q 042581 56 SHAGSSFAHAVINMAGMLIGLGQLSTPYAIENG--GWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFG 132 (459)
Q Consensus 56 ~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~--G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G 132 (459)
++|+.++++-...-.+..+....+.+....... ++. +++.+++..++...-.-+......|++ .++..++|..||
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~G--l~~~v~sR~~FG 82 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPRTG--LPTMVLSRASFG 82 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC-----HHHHTTTTS-
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccccC--CCchhcchhccC
Confidence 346667777777777777666666655444333 445 666666666555555555666667766 588999999999
Q ss_pred hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccc-----cchhhHHH-HHHHHHHHhhcccCCCCChhH
Q 042581 133 RKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAK-----LSTSQMLT-VIAVLIALPSLWLRDLSSISF 206 (459)
Q Consensus 133 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~-~i~~~~~~pl~~~~~l~~l~~ 206 (459)
.+|..+..+...+...|.........++.+..+.+.......+.. .....+.. ++..++..+ .....++.++.
T Consensus 83 ~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~g~~~l~~ 161 (440)
T PF02133_consen 83 YRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTL-FAIYGMKALRR 161 (440)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHH-HHCTHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHH-HHhcCHHHHHh
Confidence 999999999999999999999999999999988765422100000 00011111 111222222 22234444544
Q ss_pred HHHHHHHHHHHHHHHhhhhhh-ccCcc--cCCCCCcccCCchhhHHHHHhhhcccc-eeccchhhhccCCccchhHHHHH
Q 042581 207 LSVGGILMSVLIFLSVAFTAI-FGGVK--ANHRIPVLNLHKIPHISGLYIFSYAGH-IVFPNLYKAMKDPSKFTKVSIVS 282 (459)
Q Consensus 207 ~s~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~fsf~~~-~~i~~i~~e~k~p~~~~~~~~~~ 282 (459)
+..+.........+...+... ..+.+ .+..........+..++...+-.+... .+.+...+.+|++++-.+....+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~ 241 (440)
T PF02133_consen 162 LAVIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKSDTSAWWGFWLG 241 (440)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--HHHHHHHHHHH
T ss_pred HHhhhhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCCCCCcEEEEeeh
Confidence 444443333332222222222 22211 111111111113444444443333333 44678899999888777777777
Q ss_pred HHHHHHHHHHHHHHHHhh----cCCCChhh--HhhcCCCchhHHHHHHHHHHHHhhhhccchhhhhHHHHHhhCCCCccc
Q 042581 283 FTLVTALNTALGFMGTKL----FGPGVNSQ--ITLSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPISLSA 356 (459)
Q Consensus 283 ~~~~~~~Y~~~g~~gy~~----fg~~~~~~--il~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~ 356 (459)
+....+....+++.+... .++...+. ++..+.+.-......-++...+..++--...++....+.+..+++.+.
T Consensus 242 ~~~~~~~~~~~g~lg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~i~~~~~~~~~~~n~ys~~~~l~~~~~~~~~~ 321 (440)
T PF02133_consen 242 FPGGFIPFVLVGILGAAAGGIADGEPIWDPLQILGAFLPPFGGFFPALLILFASIWTNNAANLYSAGLALQNIFPKRISR 321 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHTS--HHHHHHHHH-HHHHHHHTTHHHHHTHHHHHHHHCCSTTT--H
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhHhhHHHHHHHccceeecc
Confidence 777777777766665443 33322221 223332210111112222222333444455677777777776633222
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhCch----HHHHHHHhhhHhHhHHHHhh
Q 042581 357 RSKMMIRSSVGSLLLIIILTLALSLPY----FQYVLSLTGSLVSICICLIF 403 (459)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~ia~~~~~----~~~~~~~~Ga~~~~~~~~il 403 (459)
+.... . ..++.....+.....+ +..++++.|.........++
T Consensus 322 ~~~~~----~-~~~i~~~~~~~~~~~~~~~~f~~fL~~lg~~~~P~~gI~i 367 (440)
T PF02133_consen 322 RRGVI----I-VGVIGIAIAPWGLLGNFSFLFTNFLSLLGYFLGPWAGIMI 367 (440)
T ss_dssp HHHHH----H-HHHHHHCT-GGGTCCCCHC----HCCCCCHTTHHHHHHHH
T ss_pred hHHHH----H-HHHHHHHHHHHHHHhchhhhHHHHHHHHHHhchhHHHHHH
Confidence 21111 1 1111111111112233 56677777877777666553
No 68
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.42 E-value=0.0008 Score=65.39 Aligned_cols=313 Identities=14% Similarity=0.087 Sum_probs=148.8
Q ss_pred HHHHHhhhhhccchhH-HHHhhhc--hH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchhhHhHHHHH
Q 042581 67 INMAGMLIGLGQLSTP-YAIENGG--WA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGRAAAATF 142 (459)
Q Consensus 67 ~~l~~~~iG~Gil~lP-~~~~~~G--~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~ 142 (459)
+.+....+|+|.|-.| +.-+++| |. +.+.+++.++..-..+.. +..+.+ .+|.++.+ .+||+.+.+..+.
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av~~~g--G~~~~l~~-~~g~~f~~lf~~~ 75 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---ALALVG--GGYDSLSA-RIGKVFGILFTVI 75 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---eeeecC--CCHHHHHH-HhChHHHHHHHHH
Confidence 3577888999999998 4455676 45 677777777666554444 222322 57888775 4667777777666
Q ss_pred HHHHHH-------HHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHH
Q 042581 143 IYLEIF-------MALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMS 215 (459)
Q Consensus 143 ~~~~~~-------g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 215 (459)
+.+..- -..++|-.. +..+++...... ......++...+..-++ .|.-|-...+..+-+.+.
T Consensus 76 ~~l~iGP~~aiPRtaa~s~e~~----i~p~~~~~~~~~------~l~i~siiff~i~~~l~-~~~~k~~~~iGk~LTP~l 144 (378)
T TIGR00796 76 LYLTIGPLFAIPRTATVSFEMG----IAPLLHSPTSLL------ALFIFSLIFFAVVLLLS-LNPSKLIDRVGKFLTPAL 144 (378)
T ss_pred HHHHHHhchhhhHHHHHHHHHH----HHhccCcccchH------HHHHHHHHHHHHHHHHH-cCcccHHHHhHHHHHHHH
Confidence 554321 123334333 333333211000 01112222222222223 333444444444444444
Q ss_pred HHHHHHhhhhhhccCcccCC-C-CCcccCCchhhHHHHHhhhcc-------cceeccchhh-hccCCcc-chhHHHHH--
Q 042581 216 VLIFLSVAFTAIFGGVKANH-R-IPVLNLHKIPHISGLYIFSYA-------GHIVFPNLYK-AMKDPSK-FTKVSIVS-- 282 (459)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~fsf~-------~~~~i~~i~~-e~k~p~~-~~~~~~~~-- 282 (459)
+..++.++..++..+.+..+ + .+..+-+.+..++----+++. ++..+..+.+ |+|||+| .++....+
T Consensus 145 Li~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~i 224 (378)
T TIGR00796 145 LVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLI 224 (378)
T ss_pred HHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 44455555555443222111 1 111110224444444444555 6666667777 9999985 45444444
Q ss_pred -HHHHHHHHHHHHHHHHhhcC---CC-ChhhHhhcCCC---chhHHHHHHHHHHHHhhhhccchhhhhHHHHHhhCCCCc
Q 042581 283 -FTLVTALNTALGFMGTKLFG---PG-VNSQITLSMPQ---HLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPISL 354 (459)
Q Consensus 283 -~~~~~~~Y~~~g~~gy~~fg---~~-~~~~il~~~~~---~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~ 354 (459)
......+|...+..|...-+ +. ..+.++.+..+ ++.-..+.-+...++++++-.-....+.+-+.+..++
T Consensus 225 a~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k-- 302 (378)
T TIGR00796 225 AAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK-- 302 (378)
T ss_pred HHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--
Confidence 44555566666666654322 11 12333332211 1122223334444555555444444555556655442
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHhhhHhHhHHHHhhhhHHHHH
Q 042581 355 SARSKMMIRSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVSICICLIFPCAFYIK 410 (459)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~Ga~~~~~~~~ilP~l~~l~ 410 (459)
.+.+.+ -......++.++. -.++.++++ +...+.++.|....+.
T Consensus 303 -~~y~~~-----v~~~~l~s~~ia~--~Gl~~Ii~~----~~PvL~~~YP~~i~li 346 (378)
T TIGR00796 303 -LSYKTW-----VIVFTLFSFIVAN--LGLTQIISI----SIPVLMIIYPLAIVLI 346 (378)
T ss_pred -CCHHHH-----HHHHHHHHHHHHH--hCHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 111111 1333333344443 266677764 4455556666655443
No 69
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.40 E-value=0.00091 Score=65.78 Aligned_cols=342 Identities=13% Similarity=0.041 Sum_probs=166.6
Q ss_pred cCCCCCCchHHHHHHHHHhhhhhccchhHHHHhhhc--hH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 042581 54 NNSHAGSSFAHAVINMAGMLIGLGQLSTPYAIENGG--WA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHA 130 (459)
Q Consensus 54 ~~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G--~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~ 130 (459)
++++|+=++++-+..=.+...-.+-..+....-+.| +. .++.+++.-++....+.+-.+...+++ -+|....|..
T Consensus 35 ~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~g--IpFpv~~RaS 112 (497)
T COG1953 35 PAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYG--IPFPVLSRAS 112 (497)
T ss_pred ccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccC--CCchHHHHHH
Confidence 344566666665544443333333222222222233 33 555555555555555555555555554 6999999999
Q ss_pred hchhhHh---HHHHHHHHHHHHHHHHHHHHHHhhh----hhhccCCccC---ccccccchhhHHHHHHHHHHHhhcccCC
Q 042581 131 FGRKGRA---AAATFIYLEIFMALVSYTILLHDNL----ITVFSGTSLD---LSWAKLSTSQMLTVIAVLIALPSLWLRD 200 (459)
Q Consensus 131 ~G~~~~~---~~~~~~~~~~~g~~~~y~i~~~~~l----~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~pl~~~~~ 200 (459)
||-++.. +......+..+|...- ..+..+ ..+.+..... .+....+...+...+..-++-.++..+.
T Consensus 113 FGi~Ga~~p~l~R~i~A~~WyGvqty---~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~~g 189 (497)
T COG1953 113 FGIYGANFPALIRAIVAIVWYGVQTY---AGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLLVLFKG 189 (497)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 9977654 3334444444544322 222222 2233331111 1112222233333333333444455778
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhhhhhccCcc----cCCC-CCcccCC---chhhHHHHHhhhc-ccceeccchhhhccC
Q 042581 201 LSSISFLSVGGILMSVLIFLSVAFTAIFGGVK----ANHR-IPVLNLH---KIPHISGLYIFSY-AGHIVFPNLYKAMKD 271 (459)
Q Consensus 201 l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~---~~~~~~~~~~fsf-~~~~~i~~i~~e~k~ 271 (459)
++.++++..++-.++.+.++.+.++....... .+.+ ....... .+...+...+-.| ...-|+|...+.-|+
T Consensus 190 ~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa~s 269 (497)
T COG1953 190 MESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFTRFAKS 269 (497)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchhhcccCC
Confidence 88898888887666666555555554433211 1111 1111111 1222221111111 234578999999999
Q ss_pred CccchhHHHHHHHHHHHHHHHH----HHHHHhhcCCC--ChhhHhhcCCCchhHHHHHHHHHH-HHhhhhccchhhhhHH
Q 042581 272 PSKFTKVSIVSFTLVTALNTAL----GFMGTKLFGPG--VNSQITLSMPQHLVVTKIALWATV-LTPMTKYALEFAPLAI 344 (459)
Q Consensus 272 p~~~~~~~~~~~~~~~~~Y~~~----g~~gy~~fg~~--~~~~il~~~~~~~~~~~i~~~~~~-~~~~~s~p~~~~~~~~ 344 (459)
|++-.+--.++..+.+.+.-++ +..++..||+. .+.++...+++......++-+.++ -++-++..-...+...
T Consensus 270 ~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~vsp~~ 349 (497)
T COG1953 270 QKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVATISTNIAANIVSPGY 349 (497)
T ss_pred hhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHHHHhhhHHhccCChHH
Confidence 8864444455555555555554 44567889988 556778888764333312222222 2233333334445555
Q ss_pred HHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHhhhHhHhHHHHh
Q 042581 345 QLENHLPISLSARSKMMIRSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVSICICLI 402 (459)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~Ga~~~~~~~~i 402 (459)
-+...+|+..+. ||.--+.....++.+..-+-..-..+..+++..|++.+++...+
T Consensus 350 D~s~l~Pk~in~--krg~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVm 405 (497)
T COG1953 350 DLSALFPKYINI--KRGGLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVM 405 (497)
T ss_pred HHHHhcccccch--hhhHHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHH
Confidence 556666766552 22210111122222222222223356666666667777766544
No 70
>PRK09395 actP acetate permease; Provisional
Probab=98.38 E-value=0.0027 Score=65.68 Aligned_cols=150 Identities=11% Similarity=0.122 Sum_probs=99.6
Q ss_pred CCCCCchHHHHHHHHHhhhhhc-cchhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhc-h
Q 042581 56 SHAGSSFAHAVINMAGMLIGLG-QLSTPYAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFG-R 133 (459)
Q Consensus 56 ~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G-~ 133 (459)
-.|+.+++...+.+..+.++++ .++.|-.....|+.+....+...+.......++.+-.++.+. .++.|+-++=|| |
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~~~~~g~~~~~~~~~~~~r~~g~-~T~~d~l~~Rygs~ 145 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLRNLGK-YTFADVASYRLKQG 145 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-ccHHHHHHHHcCCc
Confidence 3577888888888898988876 578997777778754322221111112223344554555554 899999998888 5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHH
Q 042581 134 KGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGIL 213 (459)
Q Consensus 134 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 213 (459)
+.+.+..+...+..+....+.....+..++.+++. +...-.++..++++..+....++...+...+..+
T Consensus 146 ~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~gi-----------~~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~i 214 (551)
T PRK09395 146 PIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGL-----------NYHVAVVLVGVLMMVYVLFGGMLATTWVQIIKAV 214 (551)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 57888777766666666666777777777766532 1333455666677777878889998888888755
Q ss_pred HHHH
Q 042581 214 MSVL 217 (459)
Q Consensus 214 ~~~~ 217 (459)
..+.
T Consensus 215 im~~ 218 (551)
T PRK09395 215 LLLS 218 (551)
T ss_pred HHHH
Confidence 4444
No 71
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.35 E-value=0.0024 Score=64.92 Aligned_cols=150 Identities=16% Similarity=0.062 Sum_probs=107.7
Q ss_pred CCCCCchHHHHHHHHHhhhh-hccchhHHHHhhhchHH-HHHH---HHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 042581 56 SHAGSSFAHAVINMAGMLIG-LGQLSTPYAIENGGWAS-AFLL---IGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHA 130 (459)
Q Consensus 56 ~~~~~s~~~~~~~l~~~~iG-~Gil~lP~~~~~~G~~g-~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~ 130 (459)
..|+.+.+-.......+..+ .-++++|......|+.+ .+.. +...+...+-...+.+.. +.++..|..|+-++=
T Consensus 36 ~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~~R 114 (493)
T COG0591 36 GGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLEAR 114 (493)
T ss_pred cCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHHHH
Confidence 35677777777888888887 56799998888888752 2222 233333344455555555 455568999999999
Q ss_pred hc-hhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHH
Q 042581 131 FG-RKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSV 209 (459)
Q Consensus 131 ~G-~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 209 (459)
|| |+.+.+..+...+..++.+..-+...+..++..++ .+ ...-.++...++...+..-.+++..+...
T Consensus 115 f~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~----------~~~~~~~~~~~v~~Yt~~gG~~av~~Td~ 183 (493)
T COG0591 115 FGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-IS----------YVTGILIGALIVALYTFLGGLRAVVWTDF 183 (493)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CC----------HHHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence 99 89999999999999999999999999998876665 32 23334455666666777778888888887
Q ss_pred HHHHHHHH
Q 042581 210 GGILMSVL 217 (459)
Q Consensus 210 ~~~~~~~~ 217 (459)
+.-.....
T Consensus 184 iqg~im~i 191 (493)
T COG0591 184 IQGLIMLI 191 (493)
T ss_pred HHHHHHHH
Confidence 76544433
No 72
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.33 E-value=0.0049 Score=62.80 Aligned_cols=153 Identities=14% Similarity=0.083 Sum_probs=91.7
Q ss_pred CCCCchHHHHHHHHHhhhhhc-cchhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhh----CCCCCCHHHHHHHHh
Q 042581 57 HAGSSFAHAVINMAGMLIGLG-QLSTPYAIENGGWASAFLLIGLGVICAYSAHLLGKCLDK----NPKSRSYIDIGQHAF 131 (459)
Q Consensus 57 ~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~y~~~~~~~~ 131 (459)
.|+.+++...+.+..+.+++. +++.|......|+.+........+.......++.+-.++ ..+..+..|+-++=|
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ry 114 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRF 114 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHh
Confidence 577889988888888888776 577886666678653222211112122223344432221 223488999999999
Q ss_pred chhh---HhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHH
Q 042581 132 GRKG---RAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLS 208 (459)
Q Consensus 132 G~~~---~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 208 (459)
|++. +.+..+...+........-....+..++.+++. +...-.++..+++...+....++...+..
T Consensus 115 g~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi-----------~~~~~iii~~~i~~~Yt~~GGl~av~~TD 183 (487)
T TIGR02121 115 NDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGL-----------DYKTGLLIGALIIVIYTFFGGFLAVSWTD 183 (487)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-----------cHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9643 333444444444444555566666666666432 12333555666777777788999998888
Q ss_pred HHHHHHHHHHHH
Q 042581 209 VGGILMSVLIFL 220 (459)
Q Consensus 209 ~~~~~~~~~~~~ 220 (459)
.+..+..+...+
T Consensus 184 ~iQ~~i~~~~~~ 195 (487)
T TIGR02121 184 FVQGLLMFFALV 195 (487)
T ss_pred HHHHHHHHHHHH
Confidence 888665554433
No 73
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.25 E-value=0.0048 Score=63.89 Aligned_cols=150 Identities=14% Similarity=0.054 Sum_probs=100.2
Q ss_pred CCCCCchHHHHHHHHHhhhhhc-cchhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhch-
Q 042581 56 SHAGSSFAHAVINMAGMLIGLG-QLSTPYAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGR- 133 (459)
Q Consensus 56 ~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~- 133 (459)
-.|+.+++...+.+..+.++++ .++.|......|+.+....+..........+++.+-.+|.+. .+..|+-++=||+
T Consensus 30 aGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~rr~~~-~T~~e~l~~Rf~s~ 108 (552)
T TIGR03648 30 AGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLRKFGK-YTVPDFIGDRYYSN 108 (552)
T ss_pred eCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-ccHHHHHHHHhCCC
Confidence 3588999999999999988775 578987766677643222211111112234566666677665 8999998888885
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHH
Q 042581 134 KGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGIL 213 (459)
Q Consensus 134 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 213 (459)
..+.+..+...+.........+...+..++.+.+. +...-.++..++++..+....++...+...+..+
T Consensus 109 ~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi-----------~~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ~i 177 (552)
T TIGR03648 109 TARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV-----------DFETGVFIGMAIVFFYAVLGGMKGVTWTQVAQYI 177 (552)
T ss_pred ceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 46777777776666676777777777777776542 1233345556666777778889988888888755
Q ss_pred HHHH
Q 042581 214 MSVL 217 (459)
Q Consensus 214 ~~~~ 217 (459)
..+.
T Consensus 178 im~i 181 (552)
T TIGR03648 178 VLIV 181 (552)
T ss_pred HHHH
Confidence 4443
No 74
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=98.20 E-value=0.0073 Score=59.22 Aligned_cols=358 Identities=11% Similarity=0.063 Sum_probs=170.5
Q ss_pred CchHHHHHHHHHhhhhhccchhHHHH-hhhchHHHHHHHHHH-HHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchhhHh
Q 042581 60 SSFAHAVINMAGMLIGLGQLSTPYAI-ENGGWASAFLLIGLG-VICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGRA 137 (459)
Q Consensus 60 ~s~~~~~~~l~~~~iG~Gil~lP~~~-~~~G~~g~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~ 137 (459)
.+.....+....+-+|.|=++--... ++.|+- .+..++.. .+...--.+-.|...-++ ++..|..++-++|+..+
T Consensus 17 l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~-ll~vills~l~~~~~Q~~~arLgivTG--~~laq~ir~~y~~~~~~ 93 (416)
T COG1914 17 LALLGPGFLVAVAYVDPGNIATSAQAGAQYGYS-LLWVILLSNLMAYILQELSARLGIVTG--KGLAEAIRERYLPGLGI 93 (416)
T ss_pred HHhhCcHHHHHHhccCchhHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhC--CcHHHHHHHHccchHHH
Confidence 44445556666666666655544222 234432 22222222 222222222334444443 68999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHH
Q 042581 138 AAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMSVL 217 (459)
Q Consensus 138 ~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 217 (459)
+..+...+....+.++..+..+-.++-++... ..+-.+++++..+.....+ ..+.+-.+.....+.
T Consensus 94 ~~~~~~~i~~~at~iae~~G~aial~ll~~ip-----------~~~g~iItav~~~iil~~~---~~r~~E~~v~~l~~~ 159 (416)
T COG1914 94 LLWILAEIAGIATDIAEVAGIAIALNLLFGIP-----------LIIGAVITAVDVLIILLLK---GYRLLERVVLILGLV 159 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh-----------HHHHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHH
Confidence 99999999999999999999888777765331 2333444444444444444 334444333333333
Q ss_pred HHHHhhhhhhccCcccC----CCC-CcccC-CchhhHHHHH-------hhhcccceeccchhhhccCCccch---hHHHH
Q 042581 218 IFLSVAFTAIFGGVKAN----HRI-PVLNL-HKIPHISGLY-------IFSYAGHIVFPNLYKAMKDPSKFT---KVSIV 281 (459)
Q Consensus 218 ~~~~~~~~~~~~~~~~~----~~~-~~~~~-~~~~~~~~~~-------~fsf~~~~~i~~i~~e~k~p~~~~---~~~~~ 281 (459)
.+++..+......+++. ++. |...+ ......++++ .+-...|.......++-+++++.+ ....+
T Consensus 160 ~~i~~~~~~~~~~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~~~~~~~~~~~~~~~~~~d~~i 239 (416)
T COG1914 160 LVILFVYVAFVAPPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQDAGIKGEENLRALRYSRIDTII 239 (416)
T ss_pred HHHHHHHHHhhcCCCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceeccccccchhHHHHHHHHHHHHHH
Confidence 33333333333322211 111 11111 1222222221 111112222210100111111122 23455
Q ss_pred HHHHHHHHHHHHHHHHHhhcC-CCChh---hHhhcC---CC--chhHHHHHHHHHHHHhhhhccchhhhhHHHHHhhCCC
Q 042581 282 SFTLVTALNTALGFMGTKLFG-PGVNS---QITLSM---PQ--HLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPI 352 (459)
Q Consensus 282 ~~~~~~~~Y~~~g~~gy~~fg-~~~~~---~il~~~---~~--~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~ 352 (459)
++....++...+-......|. ++..+ +....+ .+ .+....+--+..+.+-..+-....+.-...++...+.
T Consensus 240 ~~~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~~~G~~~~~lF~v~llasg~~s~~~~~~a~~~~~~g~~~~ 319 (416)
T COG1914 240 GMIIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAPLLGSAAFVLFGVALLAAGLSSTVVATYAGQIVMEGFLNW 319 (416)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHhhhcc
Confidence 555555555555444444442 22211 111111 10 1111111111122222222222333333344544444
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHhhhHhHhHHHHhhhhHHHHHhcCC-----CcchhHHHHHHHH
Q 042581 353 SLSARSKMMIRSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVSICICLIFPCAFYIKISWP-----HISQRLLILNVTL 427 (459)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~~-----~~~~~~~~~~~~~ 427 (459)
+.+.+.++.. .+.+....+..+.....+...++.+++.+.+..+-+.+++++.+..+|+ +.++|.++..|.+
T Consensus 320 ~~~~~~r~~i---~~~~~~ip~~~i~i~~g~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~~~v 396 (416)
T COG1914 320 RIPLWRRRLI---TRTFAIVPGLAIIILFGDPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLGWIV 396 (416)
T ss_pred cCchHhhHHH---HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHHHHH
Confidence 4333333333 5544444444444444499999999999999999999888888877765 2345666666665
Q ss_pred Hhhhhhhhhh
Q 042581 428 IGFGFLLGFS 437 (459)
Q Consensus 428 ~~~g~~~~v~ 437 (459)
.++=..+.+.
T Consensus 397 ~~~i~~L~i~ 406 (416)
T COG1914 397 VILIVALNII 406 (416)
T ss_pred HHHHHHHHHH
Confidence 5544444333
No 75
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.20 E-value=0.0094 Score=60.98 Aligned_cols=150 Identities=12% Similarity=0.048 Sum_probs=92.0
Q ss_pred CCCCchHHHHHHHHHhhhhhcc-chhHHHHhhhchHHHHHHHHHHHHHHHHHHHHH-H---HhhhCCCCCCHHHHHHHHh
Q 042581 57 HAGSSFAHAVINMAGMLIGLGQ-LSTPYAIENGGWASAFLLIGLGVICAYSAHLLG-K---CLDKNPKSRSYIDIGQHAF 131 (459)
Q Consensus 57 ~~~~s~~~~~~~l~~~~iG~Gi-l~lP~~~~~~G~~g~~~~~~~~~~~~~~~~~l~-~---~~~~~~~~~~y~~~~~~~~ 131 (459)
.|+.+++...+.+..+.+++.. ++.|....+.|+.+....+...+.......++. + -..+..+..+..|+-++=|
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~Ry 118 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRF 118 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHHHh
Confidence 5788999999999999998875 779977777786532111111111111112221 1 1123344589999999989
Q ss_pred chh---hHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHH
Q 042581 132 GRK---GRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLS 208 (459)
Q Consensus 132 G~~---~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 208 (459)
|++ .+.+..+...+.....+..-+...+..++.+++- +.....++..++++..+....++...+..
T Consensus 119 ~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~gi-----------~~~~~iii~~~iv~iYt~~GGl~aV~~TD 187 (502)
T PRK15419 119 EDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGM-----------SYETALWAGAAATILYTFIGGFLAVSWTD 187 (502)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 864 3434444445455555555566666766666542 12334566667777778888999999988
Q ss_pred HHHHHHHHH
Q 042581 209 VGGILMSVL 217 (459)
Q Consensus 209 ~~~~~~~~~ 217 (459)
.+..+.++.
T Consensus 188 ~iQ~~imi~ 196 (502)
T PRK15419 188 TVQASLMIF 196 (502)
T ss_pred HHHHHHHHH
Confidence 888655444
No 76
>PRK10484 putative transporter; Provisional
Probab=98.18 E-value=0.0088 Score=61.52 Aligned_cols=156 Identities=6% Similarity=-0.054 Sum_probs=86.9
Q ss_pred CCCCCchHHHHHHHHHhhhhhc-cchhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchh
Q 042581 56 SHAGSSFAHAVINMAGMLIGLG-QLSTPYAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRK 134 (459)
Q Consensus 56 ~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~ 134 (459)
-.|+.+++...+.+..+.++++ .++.|-.....|+..........+......+++.+-.+|.+ ..+..|+-++-||++
T Consensus 36 agR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~-~~T~~e~l~~Ryg~~ 114 (523)
T PRK10484 36 AGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRYLKSG-ITTIPDFLEERYDKT 114 (523)
T ss_pred cCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CccHHHHHHHhcCch
Confidence 3588899999999999988886 47788666667764321111111111223344444344544 489999999999988
Q ss_pred hHhHHHHHHHHHHHHH-HHHHHHHHHhhhhhhccC---CccCccccccchhhHH--HHHHHHHHHhhcccCCCCChhHHH
Q 042581 135 GRAAAATFIYLEIFMA-LVSYTILLHDNLITVFSG---TSLDLSWAKLSTSQML--TVIAVLIALPSLWLRDLSSISFLS 208 (459)
Q Consensus 135 ~~~~~~~~~~~~~~g~-~~~y~i~~~~~l~~~~~~---~~~~~~~~~~~~~~~~--~~i~~~~~~pl~~~~~l~~l~~~s 208 (459)
.+.+......+..... +.......+..++.++.. .+.+. ....+ .++..+++...+....++...+..
T Consensus 115 ~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~------~~~~~~~~~~~~~i~~~Yt~~GGl~aV~~TD 188 (523)
T PRK10484 115 TRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGISY------GAAIWLLVWLIGIIGAIYAVFGGLKAVAVSD 188 (523)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcH------HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 7766655544433332 222222233333333211 11110 01111 223345556677788899999888
Q ss_pred HHHHHHHHHH
Q 042581 209 VGGILMSVLI 218 (459)
Q Consensus 209 ~~~~~~~~~~ 218 (459)
.+..+..+..
T Consensus 189 ~iQ~vim~i~ 198 (523)
T PRK10484 189 TINGIGLLIG 198 (523)
T ss_pred HHHHHHHHHH
Confidence 8886554443
No 77
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=98.06 E-value=0.0084 Score=58.99 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=83.5
Q ss_pred CCCchHHHHHHHHHhhhhhc-cchhHHHHhhhchHHHHHHHHHHHHHH---HHHHHHHHHhhhCCCCCCH-----HHHHH
Q 042581 58 AGSSFAHAVINMAGMLIGLG-QLSTPYAIENGGWASAFLLIGLGVICA---YSAHLLGKCLDKNPKSRSY-----IDIGQ 128 (459)
Q Consensus 58 ~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~y-----~~~~~ 128 (459)
++.|.+|+.+....+.+|+| ++++|.+.+..|.-+++.+-+.+++.. +.-..+..-.++.++.++| ..+-+
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~~ 124 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIKK 124 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHHH
Confidence 56999999999999999998 999999977777436555444333333 3333333322323332447 77777
Q ss_pred HHhchhhHhHHHHHHHHHHHH-HHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHH
Q 042581 129 HAFGRKGRAAAATFIYLEIFM-ALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFL 207 (459)
Q Consensus 129 ~~~G~~~~~~~~~~~~~~~~g-~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~ 207 (459)
...|||.+.+..++ .+..++ ..........+.++..+ + . ..+...+...++.-+.....++.+..+
T Consensus 125 gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~---~--~-------~~~v~~i~l~~l~~~vi~GGik~Ia~v 191 (425)
T TIGR00835 125 GLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAF---N--V-------PKLVTGIVLTVLTALIIFGGLKRIAKI 191 (425)
T ss_pred HhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHc---C--C-------cHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 77888877777766 333323 23333444444444322 1 1 233333333333334445677777777
Q ss_pred HHHHHHHH
Q 042581 208 SVGGILMS 215 (459)
Q Consensus 208 s~~~~~~~ 215 (459)
+...+..+
T Consensus 192 ~~~lvP~m 199 (425)
T TIGR00835 192 SSVVVPFM 199 (425)
T ss_pred HHHHHHHH
Confidence 76655433
No 78
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.99 E-value=0.00035 Score=70.14 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=45.2
Q ss_pred chhhHHHHHhhhcccceeccchhhhccCCcc-chhHHHHHHHHHHHHHHHHHHHH
Q 042581 244 KIPHISGLYIFSYAGHIVFPNLYKAMKDPSK-FTKVSIVSFTLVTALNTALGFMG 297 (459)
Q Consensus 244 ~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~-~~~~~~~~~~~~~~~Y~~~g~~g 297 (459)
++...+++++=+-.|...=.+...|+|+|+| ++|-...+....+++|+++.+.-
T Consensus 295 ~F~~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 295 DFASTFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred ehhhhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHh
Confidence 4556777777777777778889999999996 99999999999999999887654
No 79
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.95 E-value=0.027 Score=56.22 Aligned_cols=46 Identities=15% Similarity=-0.017 Sum_probs=36.5
Q ss_pred CCHHHHHHHHhchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 042581 121 RSYIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVF 166 (459)
Q Consensus 121 ~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~ 166 (459)
++..|..++-+||+..++..+...+...+...+.....+--++.++
T Consensus 94 ~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~ 139 (439)
T PRK00701 94 RDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLF 139 (439)
T ss_pred CCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6899999999999988888777777777777777777776665543
No 80
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=97.77 E-value=0.047 Score=53.39 Aligned_cols=180 Identities=13% Similarity=0.112 Sum_probs=113.4
Q ss_pred HHHHHHhhhCCCCCCHHHHH-HHHhchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHH
Q 042581 108 HLLGKCLDKNPKSRSYIDIG-QHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTV 186 (459)
Q Consensus 108 ~~l~~~~~~~~~~~~y~~~~-~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 186 (459)
+++.+-.++.++ .++.|+. ++..-+..|++..+.-.+..+...++-++..+..+..+++.. ..+-.+
T Consensus 92 fL~A~~LRk~Gk-yT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~-----------~~vgv~ 159 (529)
T COG4147 92 FLIAEYLRKLGK-YTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVP-----------YHVGVV 159 (529)
T ss_pred HHHHHHHHhcCC-cchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCC-----------ceeehh
Confidence 445667778887 9999984 555556788888887777777778888888888888776632 122245
Q ss_pred HHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHhhhhhh-c--cCc-c--------c----C-CCCCc-ccCCchhhH
Q 042581 187 IAVLIALPSLWLRDLSSISFLSVGGILMSVLIFLSVAFTAI-F--GGV-K--------A----N-HRIPV-LNLHKIPHI 248 (459)
Q Consensus 187 i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~-~--~~~-~--------~----~-~~~~~-~~~~~~~~~ 248 (459)
+..++++.......++..+|.+.+.-+..+...+++..... + ..+ + + + ...++ ...++....
T Consensus 160 ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~ 239 (529)
T COG4147 160 IGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDF 239 (529)
T ss_pred hHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHH
Confidence 56666677777889999999998875544433333222111 1 000 0 0 0 00111 112344445
Q ss_pred HHHHhhhcccceeccchhhhcc-CC--ccchhHHHHHHHHHHHHHHHHHHHHHh
Q 042581 249 SGLYIFSYAGHIVFPNLYKAMK-DP--SKFTKVSIVSFTLVTALNTALGFMGTK 299 (459)
Q Consensus 249 ~~~~~fsf~~~~~i~~i~~e~k-~p--~~~~~~~~~~~~~~~~~Y~~~g~~gy~ 299 (459)
++..+--..|...+|++.-..- -| |+-|+.+.++..+..++|+..-+.|+.
T Consensus 240 isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~ 293 (529)
T COG4147 240 ISLGFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYILTPIIGAG 293 (529)
T ss_pred HHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444556666777665533 34 468899999999999999987777664
No 81
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=97.63 E-value=0.011 Score=60.46 Aligned_cols=183 Identities=15% Similarity=0.195 Sum_probs=96.5
Q ss_pred HHHHhhhcccceeccchhhhccCCcc-chhHHHHHHHHHHHHHHHHHH-HHHh--------hcCCCChhhHh---hcCCC
Q 042581 249 SGLYIFSYAGHIVFPNLYKAMKDPSK-FTKVSIVSFTLVTALNTALGF-MGTK--------LFGPGVNSQIT---LSMPQ 315 (459)
Q Consensus 249 ~~~~~fsf~~~~~i~~i~~e~k~p~~-~~~~~~~~~~~~~~~Y~~~g~-~gy~--------~fg~~~~~~il---~~~~~ 315 (459)
+++.+=|-.|...=.+-..++|||+| +|.-...+......+|+.-.+ +|-. -||+++.++.. .+||.
T Consensus 416 vgIfFPsVTGImaGSNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~laWPs 495 (1075)
T KOG2082|consen 416 VGIFFPSVTGIMAGSNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVATLAWPS 495 (1075)
T ss_pred HHhhccccceeeecCCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEEEecCCC
Confidence 34444444444445555677888876 787777787777777775332 2221 24555555543 34554
Q ss_pred chhHH----HHHHHHHHHHhhhhccchhhhh-HHHHHhhC---CCCccchhhHHHHHHHHHHHHHHHHHHHHhCchHHHH
Q 042581 316 HLVVT----KIALWATVLTPMTKYALEFAPL-AIQLENHL---PISLSARSKMMIRSSVGSLLLIIILTLALSLPYFQYV 387 (459)
Q Consensus 316 ~~~~~----~i~~~~~~~~~~~s~p~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~ 387 (459)
+|.. ........++.+++-|-.++.. ++.+...+ .+... +....|..+++. +++-+++.+.+++.+
T Consensus 496 -PwVi~IGsFlST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~-ngEPt~aLlLT~----~Ice~gILigslD~i 569 (1075)
T KOG2082|consen 496 -PWVIVIGSFLSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGKA-NGEPTWALLLTA----IICECGILIGSLDLI 569 (1075)
T ss_pred -ceeeehhHHHHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhccccC-CCCccHHHHHHH----HHHHhhheeechhHH
Confidence 3433 2345567788889888776543 33222222 11111 111222222333 334455555566666
Q ss_pred HHHhhhHhHhHHHHh-hhhHHHHHhcCCCcchhHHHHHHHHHhhhhhhhhh
Q 042581 388 LSLTGSLVSICICLI-FPCAFYIKISWPHISQRLLILNVTLIGFGFLLGFS 437 (459)
Q Consensus 388 ~~~~Ga~~~~~~~~i-lP~l~~l~~~~~~~~~~~~~~~~~~~~~g~~~~v~ 437 (459)
--++.-++--.-.|+ +-|.+.-.++-++++.+.|.-+|.+..+|..+|++
T Consensus 570 ApilsmFFLMCY~fVNLaCavqtLLrtPnWRPRfkyyHW~LSflG~sLC~~ 620 (1075)
T KOG2082|consen 570 APILSMFFLMCYLFVNLACAVQTLLRTPNWRPRFKYYHWSLSFLGASLCLA 620 (1075)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCccchhhhhHHHHHHHHHHHH
Confidence 555554443222233 45556666666654444555577777766655543
No 82
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=97.58 E-value=0.066 Score=52.54 Aligned_cols=89 Identities=17% Similarity=0.147 Sum_probs=55.2
Q ss_pred cCCCCCCchHHHHHHHHHhhhhhc-cchhHHHHhhhchHHHHHHHHHHHHHHHHHH---HHHHHhhhCCCCCCH----HH
Q 042581 54 NNSHAGSSFAHAVINMAGMLIGLG-QLSTPYAIENGGWASAFLLIGLGVICAYSAH---LLGKCLDKNPKSRSY----ID 125 (459)
Q Consensus 54 ~~~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~y----~~ 125 (459)
++++++.|.+|+...-+.+.+|+| +.+..-|....|.-+++.+-+.+++..-+-+ .|....++..+..+| ..
T Consensus 13 ~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~y 92 (416)
T PF01235_consen 13 KEEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMY 92 (416)
T ss_pred CCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHH
Confidence 344578999999999999999999 6678888887776666666555554444333 333322222111233 45
Q ss_pred HHHHHhch-hhHhHHHHH
Q 042581 126 IGQHAFGR-KGRAAAATF 142 (459)
Q Consensus 126 ~~~~~~G~-~~~~~~~~~ 142 (459)
+.++.+|+ |.+.+..++
T Consensus 93 yi~~gl~~k~la~~fai~ 110 (416)
T PF01235_consen 93 YIEKGLGSKWLAILFAIF 110 (416)
T ss_pred HHHHHhccchHHHHHHHH
Confidence 56666664 444444444
No 83
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.46 E-value=0.013 Score=55.67 Aligned_cols=105 Identities=10% Similarity=0.189 Sum_probs=82.4
Q ss_pred CCchHHHHHHHHHhhhhhccchhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHH-HhhhCCCCCCHHHHHHHHhchhhH
Q 042581 59 GSSFAHAVINMAGMLIGLGQLSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGK-CLDKNPKSRSYIDIGQHAFGRKGR 136 (459)
Q Consensus 59 ~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~y~~~~~~~~G~~~~ 136 (459)
..+.+..+.+-..++-|+|-..=|..-.+-||+ +.+.+++.+++.--......- .+.|+++ +|..|++++..||+++
T Consensus 51 P~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G-~Si~~i~~~~lG~~~~ 129 (376)
T PF02554_consen 51 PTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKG-KSIGEIAGKYLGKRAK 129 (376)
T ss_pred CCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCC-ccHHHHHHHHHHHHHH
Confidence 456777899999999999999999888999999 666665544444333333322 3456665 8999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 042581 137 AAAATFIYLEIFMALVSYTILLHDNLIT 164 (459)
Q Consensus 137 ~~~~~~~~~~~~g~~~~y~i~~~~~l~~ 164 (459)
.+..+..++.+.....++....++.+..
T Consensus 130 ~lf~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 130 KLFLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999988888888777654
No 84
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=97.33 E-value=0.18 Score=49.13 Aligned_cols=94 Identities=14% Similarity=0.094 Sum_probs=60.6
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHhchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhH
Q 042581 104 AYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQM 183 (459)
Q Consensus 104 ~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (459)
........|....++ ++..|..++-+||+..++..+...+.......+.....+.-++-++ ..+ ...
T Consensus 27 ~~~q~~~~R~~~~Tg--~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~-g~~----------~~~ 93 (358)
T PF01566_consen 27 YVFQEMAARLGIVTG--KGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF-GIP----------LWI 93 (358)
T ss_pred HHHHHHHHHHhhhcC--CChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCC----------cHH
Confidence 333344445444444 6899999999999999999888888888888888888777776655 221 344
Q ss_pred HHHHHHHHHHhhcc--cCCCCChhHHHHH
Q 042581 184 LTVIAVLIALPSLW--LRDLSSISFLSVG 210 (459)
Q Consensus 184 ~~~i~~~~~~pl~~--~~~l~~l~~~s~~ 210 (459)
+.++..+..+.+.+ .++.+.+..+...
T Consensus 94 ~~~~~~~~~~~ll~~~~~~y~~~E~~~~~ 122 (358)
T PF01566_consen 94 WVLLVAVIAILLLWLSSGGYRRLERILKV 122 (358)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 44555555444444 5555555544433
No 85
>PHA02764 hypothetical protein; Provisional
Probab=97.10 E-value=0.011 Score=54.57 Aligned_cols=93 Identities=16% Similarity=0.022 Sum_probs=68.6
Q ss_pred CCCCCchHHHHH-HHHHhhhhhccchhHHHHhhh--chHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhc
Q 042581 56 SHAGSSFAHAVI-NMAGMLIGLGQLSTPYAIENG--GWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFG 132 (459)
Q Consensus 56 ~~~~~s~~~~~~-~l~~~~iG~Gil~lP~~~~~~--G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G 132 (459)
.-|..|.+.+++ ++.+...|.+ .+.|+-++.. |...+..+++.|+++...+....+.+.+.|+.+.-..+.++++|
T Consensus 10 LVREvs~lDAF~~Nl~~m~~Gi~-Is~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYISRAFG 88 (399)
T PHA02764 10 IIKSFNILDIFSINLLYMGILSG-ISYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYIRTAFS 88 (399)
T ss_pred ceeeccHHHHHHHHHHhhccchh-HHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEhHHhhC
Confidence 346778888888 4444445554 3666644444 43466777888888888899999999999987777777889999
Q ss_pred hhhHhHHHHHHHHHHHH
Q 042581 133 RKGRAAAATFIYLEIFM 149 (459)
Q Consensus 133 ~~~~~~~~~~~~~~~~g 149 (459)
|+.+++.++..++....
T Consensus 89 P~~GFLvG~a~WLtl~~ 105 (399)
T PHA02764 89 SKFYTIFGISLWLTYVL 105 (399)
T ss_pred ccHHHHHHHHHHHHHHh
Confidence 99999988888765433
No 86
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=97.09 E-value=0.23 Score=51.22 Aligned_cols=101 Identities=23% Similarity=0.291 Sum_probs=51.4
Q ss_pred CCCchHHHHHHHHHhhhhhc-cchhHHHHh-hhchHH----HHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHh
Q 042581 58 AGSSFAHAVINMAGMLIGLG-QLSTPYAIE-NGGWAS----AFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAF 131 (459)
Q Consensus 58 ~~~s~~~~~~~l~~~~iG~G-il~lP~~~~-~~G~~g----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~ 131 (459)
+-.|..+-+...++..+|-| +.-.|+-.. +.|..- .+.++++|+=..+.=..+.+..++.+- +-|.+++...-
T Consensus 3 ~w~~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~~~~-~~~~~~~p~~~ 81 (523)
T PF00209_consen 3 KWSSKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRSGPI-GAWKRLCPIFK 81 (523)
T ss_dssp --S-HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSH-HHS-HHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 34567778899999999998 788997755 444333 233344455445555555665554332 44545443222
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 042581 132 GRKGRAAAATFIYLEIFMALVSYTILLHDNLITV 165 (459)
Q Consensus 132 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~ 165 (459)
| +++...+..+..++-|.+..+-.+..+
T Consensus 82 g------iG~~~~~~~~~~~~yy~vi~~w~l~Y~ 109 (523)
T PF00209_consen 82 G------IGYAMVLISFLIAIYYSVIVAWALYYF 109 (523)
T ss_dssp T------HHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred c------ccccccccccccccccccccccccccc
Confidence 2 233333333444444555444444433
No 87
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=96.72 E-value=0.69 Score=45.43 Aligned_cols=219 Identities=15% Similarity=0.134 Sum_probs=105.3
Q ss_pred CCCCchHHHHHHHHHhhhhhc-cchhHHHHhhhchHHHHHH-----HHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 042581 57 HAGSSFAHAVINMAGMLIGLG-QLSTPYAIENGGWASAFLL-----IGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHA 130 (459)
Q Consensus 57 ~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~ 130 (459)
+.-.|-..-+...+++.||-| +.-.|+...+.|-.+.++. +.+|+-....=+.+.|..+.++. ++|+++..
T Consensus 6 e~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~-~a~~~l~~-- 82 (439)
T COG0733 6 EQWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAV-GAFRKLAP-- 82 (439)
T ss_pred cchhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChh-HHHHHhcc--
Confidence 345566778888999999998 6889988777765422222 22222222222233333333333 66766665
Q ss_pred hchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCcc---------ccccchhh---HHHHHHHHHHHhhccc
Q 042581 131 FGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLS---------WAKLSTSQ---MLTVIAVLIALPSLWL 198 (459)
Q Consensus 131 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~---------~~~~~~~~---~~~~i~~~~~~pl~~~ 198 (459)
+|++++ +++...+..+..+.-|.++.+=.+..+.......++ ..+..++. ....+...++.-+...
T Consensus 83 -~~~~~~-~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~ 160 (439)
T COG0733 83 -KKKWEW-IGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVS 160 (439)
T ss_pred -Cccchh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 333332 233333333444444555554444333222111110 00000101 1111122222222333
Q ss_pred CCCC-ChhHHHHHHHHHHHHHHHHhhhhhhccCccc-------CCCCC-cccCCchhhHHHHHhhhccccee-ccchhhh
Q 042581 199 RDLS-SISFLSVGGILMSVLIFLSVAFTAIFGGVKA-------NHRIP-VLNLHKIPHISGLYIFSYAGHIV-FPNLYKA 268 (459)
Q Consensus 199 ~~l~-~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~fsf~~~~~-i~~i~~e 268 (459)
|..+ .+...+.+-+-...+.++.++.+....+... .++.. ..|++.+..+++=.+|+..--.. +....+.
T Consensus 161 ~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSY 240 (439)
T COG0733 161 RGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSY 240 (439)
T ss_pred HhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4543 3566666655555555555555555432111 11111 23356677788888888764444 5555566
Q ss_pred ccCCccchhHHH
Q 042581 269 MKDPSKFTKVSI 280 (459)
Q Consensus 269 ~k~p~~~~~~~~ 280 (459)
++|+++..+...
T Consensus 241 L~k~~~l~~sa~ 252 (439)
T COG0733 241 LSKKSDLVSSAL 252 (439)
T ss_pred cCcccchhhhHH
Confidence 777778665433
No 88
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=96.56 E-value=0.01 Score=59.30 Aligned_cols=202 Identities=13% Similarity=0.204 Sum_probs=121.0
Q ss_pred chhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhh---CCCCCCHHHHHHHHhchhhHhHHHHHHHHHHHHHHHHH
Q 042581 79 LSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDK---NPKSRSYIDIGQHAFGRKGRAAAATFIYLEIFMALVSY 154 (459)
Q Consensus 79 l~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y 154 (459)
|=+++...++|.. +++++.....++..+..--...+.+ ..+ ..|- +..+.+|+--+--+++.+.+.+...+..|
T Consensus 51 lrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~G-g~yf-lis~slg~efggsigiIy~f~~aVa~am~ 128 (643)
T KOG2083|consen 51 LRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSG-GVYF-LISRSLGPEFGGSIGIIYAFANAVATAMY 128 (643)
T ss_pred hhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccC-cEEE-EEEecccccccchhHHHHHHHHHHHHHHh
Confidence 5588999999988 8777766555554443333222221 111 2332 23355677666677888888899999999
Q ss_pred HHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHhhhh---hhcc--
Q 042581 155 TILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMSVLIFLSVAFT---AIFG-- 229 (459)
Q Consensus 155 ~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~---~~~~-- 229 (459)
.+.+++.+.++++..+... .++ +..++.++...++ +...+|...+.++..+++++.+.-+ .+..
T Consensus 129 ~vgfaEsv~~l~~~~s~~~----i~g---i~~vt~~ill~i~----~ag~~w~~k~q~~ll~il~iai~~f~~gs~~~~~ 197 (643)
T KOG2083|consen 129 VVGFAESVAHLFETESKEM----IDG---IGSVTVLILLAIN----VAGVEWEAKLQIVLLLILLIAIADFLVGSFFSPN 197 (643)
T ss_pred hhhHHHHHHHHHHhccHHH----hcc---hhHHHHHHHHHhh----hccchhHHHHHHHHHHHHHHHHHHhhhhhccChh
Confidence 9999999999987764211 111 2333333333333 3334444444444333333332211 1111
Q ss_pred ----C-cccC----CCCCcccCC---chhhHHHHHhhhcccceeccchhhhccCCcc-chhHHHHHHHHHHHHHHHH
Q 042581 230 ----G-VKAN----HRIPVLNLH---KIPHISGLYIFSYAGHIVFPNLYKAMKDPSK-FTKVSIVSFTLVTALNTAL 293 (459)
Q Consensus 230 ----~-~~~~----~~~~~~~~~---~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~-~~~~~~~~~~~~~~~Y~~~ 293 (459)
+ .... .+....++. .+++.+++++=+..|.-.=.++.+++|+|++ .++....+....+.+|+.+
T Consensus 198 ~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP~GaL~Ai~vst~~yl~~ 274 (643)
T KOG2083|consen 198 EFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQKAIPLGALLAIGVSTLLYLIF 274 (643)
T ss_pred hhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCchhhcccchhhhhhhhhhhhhhh
Confidence 0 0111 111112222 6777778888888888888899999999985 8999999999999999654
No 89
>PRK15015 carbon starvation protein A; Provisional
Probab=96.51 E-value=0.074 Score=54.25 Aligned_cols=103 Identities=13% Similarity=0.163 Sum_probs=78.2
Q ss_pred CchHHHHHHHHHhhhhhccchhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHH-HhhhCCCCCCHHHHHHHHhchhhHh
Q 042581 60 SSFAHAVINMAGMLIGLGQLSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGK-CLDKNPKSRSYIDIGQHAFGRKGRA 137 (459)
Q Consensus 60 ~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~y~~~~~~~~G~~~~~ 137 (459)
.+.+..+-+=+.++-|+|-+-=|....+-||+ +.+.+++..++.---..+..- .+.|+++ +|..|++++..||+++.
T Consensus 83 t~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~G-rSig~ia~~~iG~~~~~ 161 (701)
T PRK15015 83 TDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDG-RSLGELVKEEMGPTAGV 161 (701)
T ss_pred CCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCC-ccHHHHHHHHhhHHHHH
Confidence 34456778889999999999999888899999 776666644444333333322 2345555 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 042581 138 AAATFIYLEIFMALVSYTILLHDNLI 163 (459)
Q Consensus 138 ~~~~~~~~~~~g~~~~y~i~~~~~l~ 163 (459)
+..+..++.+.....++.....+.+.
T Consensus 162 lfli~i~~iliiviAvfalvvv~al~ 187 (701)
T PRK15015 162 IALVACFMIMVIILAVLAMIVVKALT 187 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998888888888777777664
No 90
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=96.34 E-value=0.16 Score=50.65 Aligned_cols=105 Identities=10% Similarity=0.114 Sum_probs=78.8
Q ss_pred CCchHHHHHHHHHhhhhhccchhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHH-HhhhCCCCCCHHHHHHHHhchhhH
Q 042581 59 GSSFAHAVINMAGMLIGLGQLSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGK-CLDKNPKSRSYIDIGQHAFGRKGR 136 (459)
Q Consensus 59 ~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~y~~~~~~~~G~~~~ 136 (459)
..+.+..+-+=..++-|+|-+-=|...++-||+ +.+.+++.+++.---...++- .+.|+++ +|..|++++-+|+..+
T Consensus 51 Ptnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G-~Si~~ia~~~lG~~a~ 129 (575)
T COG1966 51 PTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGG-KSIGEIAGKYLGRTAK 129 (575)
T ss_pred cCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCC-ccHHHHHHHHhhhhHH
Confidence 345677888899999999999999999999998 666655544444333333322 3445555 8999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 042581 137 AAAATFIYLEIFMALVSYTILLHDNLIT 164 (459)
Q Consensus 137 ~~~~~~~~~~~~g~~~~y~i~~~~~l~~ 164 (459)
.+..+...+.......++.....+.+.+
T Consensus 130 ~~~~~~~l~iliiv~Avfa~vv~~~l~~ 157 (575)
T COG1966 130 VFFLLLALILLILVGAVFAAVIAKLLAN 157 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999988888777777777666665543
No 91
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=96.32 E-value=1.2 Score=43.72 Aligned_cols=47 Identities=11% Similarity=0.002 Sum_probs=33.7
Q ss_pred CCHHHHHHHHhchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 042581 121 RSYIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFS 167 (459)
Q Consensus 121 ~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 167 (459)
++..|.+++-++|+.++...+...+...+.........+--++-+++
T Consensus 64 ~~l~~~~r~~~~~~~~~~~~~~~~l~ii~~~~~e~~G~a~al~ll~g 110 (390)
T TIGR01197 64 LDLAEVCREHYPKVPRITLWILAELAIIATDMAEVIGTAIALNLLSH 110 (390)
T ss_pred CCHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 78999999999998777666665555566666666666666665543
No 92
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=95.91 E-value=0.17 Score=51.58 Aligned_cols=232 Identities=13% Similarity=0.037 Sum_probs=128.6
Q ss_pred CCCCchHHHHHHHHHhhhhhc-cchhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchh
Q 042581 57 HAGSSFAHAVINMAGMLIGLG-QLSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRK 134 (459)
Q Consensus 57 ~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~ 134 (459)
.|+..++...+.++.+.+|++ ++++|.-..+.|.. ....+...... ....+...-.-.+. +..+-.|+-++-||+.
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~~~-~~~~~~f~Pvf~~~-~v~~~~eYl~~Rf~~~ 121 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWNALLSV-LLLGWIFIPVFYRL-GVTTMYEYLEKRFGGR 121 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHHHHHHH-HhhheEEEEEEEec-CeeehhHHHHHHhccc
Confidence 467777888888999999887 58899777777753 22221111111 11111111111122 2466778888888888
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHH
Q 042581 135 GRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILM 214 (459)
Q Consensus 135 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 214 (459)
.+.+..+...+..+.....+...-+-.+++..+.. ......+...++.-......+++.-+.-.+..+.
T Consensus 122 ~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~~-----------~~l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q~~i 190 (585)
T KOG2349|consen 122 VRYLATLSFILMIFLYLPVDMYAPALAINQVTGIN-----------LYLIVVILGLICVFYTALGGLKAVIWTDVVQTVI 190 (585)
T ss_pred chhhHHHHHHHHHHhheeeeEeehHHHHHHHhccC-----------ceeehHHHHHHHHHHHHhcCeeEEEEhhHHHHHH
Confidence 77777777666655544444433333333332211 1111233444444455566778787777777766
Q ss_pred HHHHHHHhhhhhhcc--Cc-------------------ccCCCCCcccCCchhhHHHHHhhhcccceeccchhhhccCCc
Q 042581 215 SVLIFLSVAFTAIFG--GV-------------------KANHRIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPS 273 (459)
Q Consensus 215 ~~~~~~~~~~~~~~~--~~-------------------~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~ 273 (459)
++.....+...+... +. ..++.....-|.-++.....-...|..+++...=+-.+|+-+
T Consensus 191 ml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~VQR~lsl~slk 270 (585)
T KOG2349|consen 191 MLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLIVQRYLSLPSLK 270 (585)
T ss_pred HHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHHHhHHhccccHH
Confidence 666555555443211 00 011111112244344556666777888888777777777777
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 042581 274 KFTKVSIVSFTLVTALNTALGFMGTKLF 301 (459)
Q Consensus 274 ~~~~~~~~~~~~~~~~Y~~~g~~gy~~f 301 (459)
+.++.........+++.......|...|
T Consensus 271 ~ak~~~~~~~~~~~l~~~~~~~~G~i~~ 298 (585)
T KOG2349|consen 271 HAKPSLLLFGYGVLLIMFIMVFVGMIIY 298 (585)
T ss_pred HhhhhhhhhhhHHHHHHHhhcccceeEe
Confidence 8888777776666666655555554433
No 93
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=95.15 E-value=3.7 Score=40.49 Aligned_cols=315 Identities=14% Similarity=0.093 Sum_probs=150.2
Q ss_pred CCCCCCchHHHHHHHHHhhhhhc-cchhHHHHhhhchHHHHHHHHHH---HHHHHHHHHHHHHhhhCCCCCCH----HHH
Q 042581 55 NSHAGSSFAHAVINMAGMLIGLG-QLSTPYAIENGGWASAFLLIGLG---VICAYSAHLLGKCLDKNPKSRSY----IDI 126 (459)
Q Consensus 55 ~~~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~g~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~y----~~~ 126 (459)
+.+++.|.+|+...-..+.+|+| +-+..-|.+..|.-++..+-+.+ ..+-|.=-.|....++..+...| .-+
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yY 137 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYY 137 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHH
Confidence 45688999999999999999999 56688888877765665555444 44444444444333322212333 244
Q ss_pred HHHHhc-hhhHhHHHHHHHHHHHH--HHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCC
Q 042581 127 GQHAFG-RKGRAAAATFIYLEIFM--ALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSS 203 (459)
Q Consensus 127 ~~~~~G-~~~~~~~~~~~~~~~~g--~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 203 (459)
.++-+| ||.+.++.+.+. ..+| ....-.-.+++.++..++.. .+..-+...++.-+.....++.
T Consensus 138 i~kGl~~r~l~v~FA~~li-~afg~i~n~vQ~NsIa~a~~~af~~~------------~~~~gi~la~l~~~VI~GGi~r 204 (452)
T COG1115 138 IEKGLGMRWLAVLFAFALI-AAFGFIGNGVQSNSIASALANAFGIP------------PLVTGIVLALLVALVIFGGIKR 204 (452)
T ss_pred HHhhcCCcHHHHHHHHHHH-HHHHhhcchhhHHHHHHHHHHhcCCc------------HHHHHHHHHHHHHHHHHcchHH
Confidence 555555 455555553333 2333 44555555556555544331 2233333333333444567777
Q ss_pred hhHHHHHHHHHH--HHHHHHhhhhhhc-cCccc----------CCCCCcccCC------chhhHHHHHhhhcccc-eecc
Q 042581 204 ISFLSVGGILMS--VLIFLSVAFTAIF-GGVKA----------NHRIPVLNLH------KIPHISGLYIFSYAGH-IVFP 263 (459)
Q Consensus 204 l~~~s~~~~~~~--~~~~~~~~~~~~~-~~~~~----------~~~~~~~~~~------~~~~~~~~~~fsf~~~-~~i~ 263 (459)
+..++..-+-.+ .+.+..+.+.... +..+. .......++. .+...+.--+||-+.- ...|
T Consensus 205 Ia~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap 284 (452)
T COG1115 205 IAKVSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAP 284 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcch
Confidence 777666554222 2222222211111 11110 0000111111 2233445566666543 4455
Q ss_pred chhhh--ccCCccchhHHHH-----HHHHHHHHHHHHHHHHHhhcCCCChh-hHh-----hcCCCchhHHHHHHHHHHHH
Q 042581 264 NLYKA--MKDPSKFTKVSIV-----SFTLVTALNTALGFMGTKLFGPGVNS-QIT-----LSMPQHLVVTKIALWATVLT 330 (459)
Q Consensus 264 ~i~~e--~k~p~~~~~~~~~-----~~~~~~~~Y~~~g~~gy~~fg~~~~~-~il-----~~~~~~~~~~~i~~~~~~~~ 330 (459)
..+.+ .+||.|=--.-.. .+.+|+.--+.+=+.|-+..++..++ ..+ ..+++ +-....-+.+.+.
T Consensus 285 ~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~--~G~~fv~i~l~lF 362 (452)
T COG1115 285 IAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGS--WGSYFVAIALFLF 362 (452)
T ss_pred hHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCc--cHHHHHHHHHHHH
Confidence 55444 4466542222222 33344443333334444433332121 111 22332 3333344444444
Q ss_pred hhhhccchhhhhHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHh
Q 042581 331 PMTKYALEFAPLAIQLENHLPISLSARSKMMIRSSVGSLLLIIILTLALSL-PYFQYVLSLT 391 (459)
Q Consensus 331 ~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~-~~~~~~~~~~ 391 (459)
..+|.--..+-.+.+++.+.+++ ....+.|...+....+-+..- |....+-++.
T Consensus 363 afTTIlg~yyyge~~~~fl~~~k-------~~~~~~r~~~l~~v~~Ga~~~l~~vW~laD~~ 417 (452)
T COG1115 363 AFTTILGWYYYGEKNIEFLFGSK-------KAILLYRLIVLAMVFLGAVLSLDLVWNLADLF 417 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCc-------hHHHHHHHHHHHHHHHhccccHHHHHHHHHHh
Confidence 45555555566777777765222 222347777776666666442 4444444443
No 94
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=95.09 E-value=0.34 Score=47.28 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=53.3
Q ss_pred CCHHHHHHHHhchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhc
Q 042581 121 RSYIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSL 196 (459)
Q Consensus 121 ~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~ 196 (459)
.-..+++++.||+.|+.+..+...+.|+.++++.....+|+++.+.+.. +.+.|.++..++.+.++
T Consensus 255 ~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k~----------~y~~~v~~~~l~s~~ia 320 (378)
T TIGR00796 255 QILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPKL----------SYKTWVIVFTLFSFIVA 320 (378)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------CHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999986642 25555555555555444
No 95
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=94.86 E-value=4.6 Score=40.09 Aligned_cols=252 Identities=12% Similarity=0.078 Sum_probs=125.2
Q ss_pred ccCCCCCCchHHHHHHHHHhhhhhccchhHHHHhhhc--hH-HHHHHHHHHHHHHHHHHHHHHHhhhCCC---CCCHHHH
Q 042581 53 ENNSHAGSSFAHAVINMAGMLIGLGQLSTPYAIENGG--WA-SAFLLIGLGVICAYSAHLLGKCLDKNPK---SRSYIDI 126 (459)
Q Consensus 53 ~~~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G--~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~y~~~ 126 (459)
.+..+|.=++++-+..=....++.+..-+..+.-+.| |. ++++..+.-.+... .++- ...++ .-++.-.
T Consensus 49 v~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~~~---f~~l--ns~~G~~yhIsFpv~ 123 (572)
T KOG2466|consen 49 VPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFTAI---FLVL--NSRPGSDYHISFPVL 123 (572)
T ss_pred CCcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHHHH---HHHH--ccCCCcccccceeee
Confidence 3445677899998888888888888887777777788 45 66665554333322 1111 12222 2455666
Q ss_pred HHHHhchhhHh---HHHHHHHHHHHHHHHHHHHHHHhhhhhh----cc---CCccCccccccchhhHH-HHHHHHHHHhh
Q 042581 127 GQHAFGRKGRA---AAATFIYLEIFMALVSYTILLHDNLITV----FS---GTSLDLSWAKLSTSQML-TVIAVLIALPS 195 (459)
Q Consensus 127 ~~~~~G~~~~~---~~~~~~~~~~~g~~~~y~i~~~~~l~~~----~~---~~~~~~~~~~~~~~~~~-~~i~~~~~~pl 195 (459)
.|..||-++.. +..+.+.+..+|. ..-+.++.++-+ ++ +.+...+....+...+. .++.-++..|+
T Consensus 124 sR~sFGiygS~~pIi~R~vma~vwYg~---~awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~ 200 (572)
T KOG2466|consen 124 SRSSFGIYGSLWPIINRVVMACVWYGV---NAWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPF 200 (572)
T ss_pred eeeehhhhHhHHHHHHHHHHHHhhhhh---hhhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhhe
Confidence 67777765433 3333444433332 122233333322 22 22222222223333443 44555566666
Q ss_pred cccCCCCChhHHHHHHHHHHHHHHHHhhhhhhcc--Cccc-CC-CCCcccCCchhhHHHHHhhhccc----ceeccchhh
Q 042581 196 LWLRDLSSISFLSVGGILMSVLIFLSVAFTAIFG--GVKA-NH-RIPVLNLHKIPHISGLYIFSYAG----HIVFPNLYK 267 (459)
Q Consensus 196 ~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~--~~~~-~~-~~~~~~~~~~~~~~~~~~fsf~~----~~~i~~i~~ 267 (459)
.+. ....++++-....+.+-...+.++++...+ +.++ .. .....+......-+-.+..++.. .-|.|...+
T Consensus 201 ~~~-~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~pDFsR 279 (572)
T KOG2466|consen 201 YWF-PPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNAPDFSR 279 (572)
T ss_pred eec-cHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhccCchhHh
Confidence 655 444455544444333333333333333332 1111 11 11222222233333334444333 356888888
Q ss_pred hccCCccchhHHHHHHHH----HHHHHHHHHHHHHhhcCCCC--hhhHhhcC
Q 042581 268 AMKDPSKFTKVSIVSFTL----VTALNTALGFMGTKLFGPGV--NSQITLSM 313 (459)
Q Consensus 268 e~k~p~~~~~~~~~~~~~----~~~~Y~~~g~~gy~~fg~~~--~~~il~~~ 313 (459)
--|+|.+....-.+++.+ ..++=++.+..++..||.+- +-+++.++
T Consensus 280 F~ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~ 331 (572)
T KOG2466|consen 280 FAKSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQW 331 (572)
T ss_pred hcCCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHH
Confidence 889997654444444444 44444455666788899763 34555554
No 96
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=94.24 E-value=5.4 Score=38.25 Aligned_cols=235 Identities=11% Similarity=-0.008 Sum_probs=126.6
Q ss_pred CCCchHHHHHHHHHhhhhhc-cchhHHHHhhhc--hH--HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHH-h
Q 042581 58 AGSSFAHAVINMAGMLIGLG-QLSTPYAIENGG--WA--SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHA-F 131 (459)
Q Consensus 58 ~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G--~~--g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~-~ 131 (459)
|+.+-....+....+-+++. .++=|.+..+.| |+ +.+=.....+.-..-+.=+.+.+++++. -+..|+-++= =
T Consensus 39 Rsmgg~VlAmt~~aTYisaSSFigGpgaayk~GlgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nA-ltI~D~l~~RY~ 117 (473)
T COG4145 39 RSMGGIVLAMTFTATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLALGVLGKKFAILAREYNA-LTINDLLFARYQ 117 (473)
T ss_pred CcccceehhhHHHHHHHHHhhhcCCCcHHHHhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCC-eeHHHHHHHHhc
Confidence 55566666666777777664 466776666655 32 1111111111112223334445666665 7888887655 4
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHH
Q 042581 132 GRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGG 211 (459)
Q Consensus 132 G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 211 (459)
++.-.++..+.+.+...+..++-.+..+..++...+-. ...-.++++..+.........+.....-.+.
T Consensus 118 s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gid-----------Y~tgL~ifa~~V~iYt~fGGFRAvvltD~IQ 186 (473)
T COG4145 118 SRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGID-----------YTTGLLIFAVSVAIYTAFGGFRAVVLTDTIQ 186 (473)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCCC-----------chhhHHHHHHHHHHHHhhcceeeeehHHHHH
Confidence 67788899999999999999999999999888875432 2222455555666666666776665554443
Q ss_pred H----HHHHHHHHHhhhhhh--cc------CcccC--CCCCcc---cCCchhhHHHHHhhhcccceeccchhhhccCCcc
Q 042581 212 I----LMSVLIFLSVAFTAI--FG------GVKAN--HRIPVL---NLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK 274 (459)
Q Consensus 212 ~----~~~~~~~~~~~~~~~--~~------~~~~~--~~~~~~---~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~ 274 (459)
- +..+..++.+++..- .+ +.+++ .+.+.. ++.-+.+..-.+.++-.+.+....=.-..||.|.
T Consensus 187 G~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlglP~t~vr~ia~kDska 266 (473)
T COG4145 187 GLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFWILVCFGVLGLPHTAVRCIAFKDSKA 266 (473)
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcccccchHHHHHHHHHHHHHhcCcHHHHHHHhccchhH
Confidence 2 222233333333211 10 11111 111111 1111122222233333444444333444566666
Q ss_pred chhHHHHHHHHHHHHHH---HHHHHHHhhcCCC
Q 042581 275 FTKVSIVSFTLVTALNT---ALGFMGTKLFGPG 304 (459)
Q Consensus 275 ~~~~~~~~~~~~~~~Y~---~~g~~gy~~fg~~ 304 (459)
.++.+.++..+..++-+ +.|.+|.....|-
T Consensus 267 ih~gmiigt~vi~il~~gmhl~G~~graViPdl 299 (473)
T COG4145 267 IHRGMIIGTIVIAILMLGMHLAGALGRAVIPDL 299 (473)
T ss_pred HhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCC
Confidence 77777777666666555 4577777777654
No 97
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=93.86 E-value=0.45 Score=47.01 Aligned_cols=66 Identities=12% Similarity=0.248 Sum_probs=55.4
Q ss_pred CHHHHHHHHhchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcc
Q 042581 122 SYIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLW 197 (459)
Q Consensus 122 ~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~ 197 (459)
-..+++++.+|+.|..+..+...+.|+-++++-...++|+++..++.. +++.|.+++.++.+.++.
T Consensus 262 lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~ki----------sY~~~v~i~~i~S~~ian 327 (427)
T PF05525_consen 262 LLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKI----------SYKVWVIIFTIFSFIIAN 327 (427)
T ss_pred HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------ChHHHHHHHHHHHHHHHH
Confidence 356778999999999999999999999999999999999999998733 367777777777666653
No 98
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=91.88 E-value=2.3 Score=41.41 Aligned_cols=66 Identities=15% Similarity=0.230 Sum_probs=55.5
Q ss_pred CCHHHHHHHHhchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhc
Q 042581 121 RSYIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSL 196 (459)
Q Consensus 121 ~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~ 196 (459)
.=..++.++.||+.|.++...++.+.|+-++++....++|++++.++.. +++.|..+..++.+.++
T Consensus 263 ~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~~----------SY~~~v~if~i~sflva 328 (431)
T COG1114 263 QILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPKL----------SYKTWVIIFTLISFLVA 328 (431)
T ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----------cHHHHHHHHHHHHHHHH
Confidence 3467888999999999999999999999999999999999999998844 36667777766666554
No 99
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=87.26 E-value=33 Score=34.13 Aligned_cols=315 Identities=12% Similarity=0.125 Sum_probs=147.3
Q ss_pred CchHHHHHHHHHhhhhhccchhHHHHh-hhc--hH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchhh
Q 042581 60 SSFAHAVINMAGMLIGLGQLSTPYAIE-NGG--WA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKG 135 (459)
Q Consensus 60 ~s~~~~~~~l~~~~iG~Gil~lP~~~~-~~G--~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~~ 135 (459)
......-+.+.....|+|=|=.|-... ++| |. +.+-.++.++..-.-+.+-+ .+.+ .++++++++.--+.+
T Consensus 3 k~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~---~~~~--~~~~~l~~~v~~~f~ 77 (427)
T PF05525_consen 3 KDILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAV---AKSG--GGIEDLASRVGPKFA 77 (427)
T ss_pred chhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH---hhcC--CCHHHHhcccCcHHH
Confidence 345556778999999999888885543 455 55 66666665554433222111 1222 488888875543333
Q ss_pred HhHHHHHHHHHHHHH--------HHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHH
Q 042581 136 RAAAATFIYLEIFMA--------LVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFL 207 (459)
Q Consensus 136 ~~~~~~~~~~~~~g~--------~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~ 207 (459)
..+..+.+.. .|- .++|-+.... +++. +... ......++...+.+-+++-+ -+-+..+
T Consensus 78 ~if~~~i~l~--IGP~~aiPRtaa~sfe~~i~p----~~~~-~~~~------~~~ifs~iFF~i~~~l~~~p-~kivd~i 143 (427)
T PF05525_consen 78 LIFTILIYLS--IGPLFAIPRTAAVSFEMGIAP----FFPE-NSNI------SLLIFSIIFFAITYLLSLNP-SKIVDRI 143 (427)
T ss_pred HHHHHHHHHH--HHhcccCcchhhhhHHHhhhc----cCCc-cccc------chhhhhHHHHHHHHHHHhch-hhHHHHH
Confidence 3333222211 121 2233322222 2221 1111 23333445555555554332 2223333
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCcccCCCCC--c--ccC-------CchhhHHHHHhhhcccceeccchhhh--ccCCcc
Q 042581 208 SVGGILMSVLIFLSVAFTAIFGGVKANHRIP--V--LNL-------HKIPHISGLYIFSYAGHIVFPNLYKA--MKDPSK 274 (459)
Q Consensus 208 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~-------~~~~~~~~~~~fsf~~~~~i~~i~~e--~k~p~~ 274 (459)
..+-+-..+..++++++..+....+...+.. . ..+ -+...+++.+.|+-... ...++ .+++|+
T Consensus 144 Gk~LTP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi----~~i~~~g~~~~k~ 219 (427)
T PF05525_consen 144 GKFLTPILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIIII----NAIRQKGYKDKKE 219 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHH----HHHHHhCCCCHHH
Confidence 3333333444444444444444322211111 1 000 02233555555543222 22222 233443
Q ss_pred c----hhHHHHHHHHHHHHHHHHHHHHHhhcC---CCC-hhhHhhcCCCc---hhHHHHHHHHHHHHhhhhccchhhhhH
Q 042581 275 F----TKVSIVSFTLVTALNTALGFMGTKLFG---PGV-NSQITLSMPQH---LVVTKIALWATVLTPMTKYALEFAPLA 343 (459)
Q Consensus 275 ~----~~~~~~~~~~~~~~Y~~~g~~gy~~fg---~~~-~~~il~~~~~~---~~~~~i~~~~~~~~~~~s~p~~~~~~~ 343 (459)
. .++-.++.....++|...+..|...-+ ++. .+.++....+. +.-..+..+.+.+.++++---....+.
T Consensus 220 ~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a 299 (427)
T PF05525_consen 220 IKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACA 299 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 356667777788888888888766544 223 33444433211 122223344455555565555556667
Q ss_pred HHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHhhhHhHhHHHHhhhhHHHHHh
Q 042581 344 IQLENHLPISLSARSKMMIRSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVSICICLIFPCAFYIKI 411 (459)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~Ga~~~~~~~~ilP~l~~l~~ 411 (459)
+-+++.+++-. .+.+ -.+....++++|. -.++.+++ +..+.+.++.|..+.+..
T Consensus 300 ~yf~~~~~kis---Y~~~-----v~i~~i~S~~ian--~Gl~~Ii~----~s~PiL~~iYP~~IvLIl 353 (427)
T PF05525_consen 300 EYFSELFPKIS---YKVW-----VIIFTIFSFIIAN--LGLDQIIK----ISVPILMFIYPVAIVLIL 353 (427)
T ss_pred HHHHHHhcccC---hHHH-----HHHHHHHHHHHHH--hCHHHHHH----HHHHHHHHHhHHHHHHHH
Confidence 77777665211 1121 1233333344442 23556666 455667778887776653
No 100
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=86.79 E-value=6.6 Score=39.04 Aligned_cols=64 Identities=19% Similarity=0.187 Sum_probs=53.8
Q ss_pred HHHHHHHhchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhccc
Q 042581 124 IDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWL 198 (459)
Q Consensus 124 ~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 198 (459)
....++.+|++++.+..+.+++.|+-++++....+++++++.++ . +++.+.++..++.++++..
T Consensus 268 ~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-i----------sY~~~v~i~~l~S~~lSn~ 331 (439)
T PRK15433 268 HAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-L----------SYRTLVFILGGFSMVVSNL 331 (439)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C----------cHHHHHHHHHHHHHHHHHh
Confidence 45578889999999999999999999999999999999998865 1 3677777777777777643
No 101
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=85.75 E-value=46 Score=34.28 Aligned_cols=75 Identities=24% Similarity=0.281 Sum_probs=46.0
Q ss_pred CCCCchHHHHHHHHHhhhhhc-cchhHHH-Hhhhch---H-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 042581 57 HAGSSFAHAVINMAGMLIGLG-QLSTPYA-IENGGW---A-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHA 130 (459)
Q Consensus 57 ~~~~s~~~~~~~l~~~~iG~G-il~lP~~-~~~~G~---~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~ 130 (459)
+.-.+..+....+++..++.| +--.||- +++.|+ + =.+++++.|+=..|-=..+.+.++. +...-+..++-..
T Consensus 79 ~~W~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r~-g~~gvw~ri~P~l 157 (629)
T KOG3659|consen 79 PTWGSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHRQ-GCIGVWRRIAPAL 157 (629)
T ss_pred CcchhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhcc-cchhHHHHhCHHh
Confidence 344577788888999999988 5668965 666665 2 4556666666666655555554333 2224444555444
Q ss_pred hc
Q 042581 131 FG 132 (459)
Q Consensus 131 ~G 132 (459)
-|
T Consensus 158 ~G 159 (629)
T KOG3659|consen 158 KG 159 (629)
T ss_pred cC
Confidence 44
No 102
>PLN02680 carbon-monoxide oxygenase
Probab=83.43 E-value=32 Score=30.95 Aligned_cols=100 Identities=15% Similarity=0.202 Sum_probs=62.8
Q ss_pred CCcccCCchhhHHHHHhhhcccceeccchhhhccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHhhcCCCc
Q 042581 237 IPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSKFTKVSIVSFTLVTALNTALGFMGTKLFGPGVNSQITLSMPQH 316 (459)
Q Consensus 237 ~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~ 316 (459)
...+||..+....+.++.. + +.+.. ++..+.+|+.+|.+....-...++...+|+.....+.++ ..+.+-++-+
T Consensus 44 ~~~Fn~HPlLM~~Gfi~l~--g-eAIL~-yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~--~~~~nfySlH 117 (232)
T PLN02680 44 DLIFNVHPVLMVIGLVLLN--G-EAMLA-YKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNE--KGIDNFYSLH 117 (232)
T ss_pred cceEechHHHHHHHHHHHH--H-HHHhc-cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCccccccHH
Confidence 3467777777776666532 2 22222 344555667778888888888888888888665555443 3343344446
Q ss_pred hhHHHHHHHHHHHHhhhhccchhhhh
Q 042581 317 LVVTKIALWATVLTPMTKYALEFAPL 342 (459)
Q Consensus 317 ~~~~~i~~~~~~~~~~~s~p~~~~~~ 342 (459)
+|......+++.+|.+..+....+|-
T Consensus 118 SWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 118 SWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 67777777777888777766555553
No 103
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=82.31 E-value=61 Score=32.99 Aligned_cols=26 Identities=15% Similarity=-0.022 Sum_probs=18.8
Q ss_pred CCCCCCchHHHHHHHHHhhhhhccch
Q 042581 55 NSHAGSSFAHAVINMAGMLIGLGQLS 80 (459)
Q Consensus 55 ~~~~~~s~~~~~~~l~~~~iG~Gil~ 80 (459)
+.+++-|.++-...+..+-+|+|++.
T Consensus 70 d~kPefS~~sW~aMlf~aGig~Givf 95 (485)
T PF02028_consen 70 DAKPEFSTFSWFAMLFCAGIGAGIVF 95 (485)
T ss_dssp SS--SS-HHHHHHHHHHHCSSHHHHH
T ss_pred CCCCCCCchHHHHHHHHHHhcchhhc
Confidence 34566778888899999999999864
No 104
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=81.52 E-value=3.2 Score=36.86 Aligned_cols=83 Identities=17% Similarity=0.271 Sum_probs=53.2
Q ss_pred HHHHHHHHhCchHHHHHHHh---------hhHhHhHHHHhhhhHHHHHhcCC--C---cchhHHHHHHHHHhhhhhhhhh
Q 042581 372 IIILTLALSLPYFQYVLSLT---------GSLVSICICLIFPCAFYIKISWP--H---ISQRLLILNVTLIGFGFLLGFS 437 (459)
Q Consensus 372 ~~~~~ia~~~~~~~~~~~~~---------Ga~~~~~~~~ilP~l~~l~~~~~--~---~~~~~~~~~~~~~~~g~~~~v~ 437 (459)
..++++|..++.++.++.+. ||.+|.-+.++= |..+-+. + .....+|+.|+++++|+++.+-
T Consensus 164 ~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll~lr 239 (262)
T KOG4812|consen 164 MWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLLLFLR 239 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHHHHHH
Confidence 33455555555555554443 677776666553 3222222 1 1123588999999999999997
Q ss_pred hhH--HHHHHHHHHhccccccCC
Q 042581 438 GTT--FSLKSLIHTLQDAHGTRR 458 (459)
Q Consensus 438 ~~~--~~i~~l~~~~~~~~~~~~ 458 (459)
+++ -.|+..-+.+.+.+++|.
T Consensus 240 ~~i~YikVrrm~~~~s~~~q~r~ 262 (262)
T KOG4812|consen 240 GFINYIKVRRMEEKYSNQSQTRA 262 (262)
T ss_pred HHHhHHHHhhHHHHHhcccccCC
Confidence 775 678888889998888873
No 105
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=80.48 E-value=81 Score=33.22 Aligned_cols=41 Identities=22% Similarity=0.215 Sum_probs=28.0
Q ss_pred CCCchHHHHHHHHHhhhhhc-cchhHHHHhhhch-HHHHHHHH
Q 042581 58 AGSSFAHAVINMAGMLIGLG-QLSTPYAIENGGW-ASAFLLIG 98 (459)
Q Consensus 58 ~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~-~g~~~~~~ 98 (459)
.-.+..+-++..++..+|-| +.=.|+...+-|. .-++-.++
T Consensus 36 ~w~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i 78 (629)
T KOG3660|consen 36 NWKSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLI 78 (629)
T ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHH
Confidence 34488899999999999998 5559966554443 33333333
No 106
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=79.70 E-value=44 Score=34.07 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=41.2
Q ss_pred CCHHHHHHHHhchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Q 042581 121 RSYIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSG 168 (459)
Q Consensus 121 ~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 168 (459)
....++-....||++......+..+..+..+++-.+..+.....+--+
T Consensus 325 ~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRD 372 (550)
T KOG1289|consen 325 QPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARD 372 (550)
T ss_pred ChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhcc
Confidence 577888889999999988888889999999999999999888877543
No 107
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=73.70 E-value=23 Score=35.60 Aligned_cols=103 Identities=12% Similarity=0.099 Sum_probs=58.6
Q ss_pred CHHHHHHHHhchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCcccc--ccc--hhhHHHHHHHHHHHhhcc
Q 042581 122 SYIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWA--KLS--TSQMLTVIAVLIALPSLW 197 (459)
Q Consensus 122 ~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~--~~~--~~~~~~~i~~~~~~pl~~ 197 (459)
--.+.+++.+|.+. +.+-++..+..+|..-+.+...+..+.....+...+.... +.. ..+.-.+...+..+.+.+
T Consensus 274 Vav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~ 352 (479)
T KOG1287|consen 274 VAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSL 352 (479)
T ss_pred HHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHH
Confidence 34678889999988 9999999999999888888877777776643332111000 000 112234444555555555
Q ss_pred cCCCCCh-hHHHHHHHHHHHHHHHHhhhh
Q 042581 198 LRDLSSI-SFLSVGGILMSVLIFLSVAFT 225 (459)
Q Consensus 198 ~~~l~~l-~~~s~~~~~~~~~~~~~~~~~ 225 (459)
..+.+.+ .+.+....+.....++..++.
T Consensus 353 ~~d~~~LIny~sf~~~l~~~l~~~gll~l 381 (479)
T KOG1287|consen 353 IGDFDQLINYVSFAYWLFRGLSMAGLLWL 381 (479)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555443 344444444444444444443
No 108
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=62.50 E-value=1e+02 Score=26.58 Aligned_cols=107 Identities=14% Similarity=0.088 Sum_probs=63.4
Q ss_pred cCcccCCCCCcccCCchhhHHHHHhhhcccceeccchhhhc---cCCccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 042581 229 GGVKANHRIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAM---KDPSKFTKVSIVSFTLVTALNTALGFMGTKLFGPGV 305 (459)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~---k~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~ 305 (459)
++..++.+...+||..+...++.+.. .-+.+.. ++-. +.+++.+|.+....-...++...+|+.....+-++.
T Consensus 24 gG~~w~~~~~~Fn~HP~lMv~Gfi~L---~geAiL~-Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~ 99 (179)
T cd08762 24 GGFAWDGSSKNFNWHPVLMVTGMVVL---YGNAALV-YRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVH 99 (179)
T ss_pred CccCCCCCCCceeehHHHHHHHHHHH---HHHHHHh-hcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 44555544446777666665555544 2222222 2211 235566788888888888888888887766665442
Q ss_pred hhhHhhcCCCchhHHHHHHHHHHHHhhhhccchhhh
Q 042581 306 NSQITLSMPQHLVVTKIALWATVLTPMTKYALEFAP 341 (459)
Q Consensus 306 ~~~il~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~ 341 (459)
.+.+.++-++|.......++.+|-+..+....+|
T Consensus 100 --~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p 133 (179)
T cd08762 100 --HTANLYSLHSWVGICTVALFTCQWVMGFTSFLLP 133 (179)
T ss_pred --CccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444456776666777777777766555445
No 109
>COG3817 Predicted membrane protein [Function unknown]
Probab=61.39 E-value=1.3e+02 Score=27.40 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhcccc
Q 042581 418 QRLLILNVTLIGFGFLLGFSGTTFSLKSLIHTLQDAH 454 (459)
Q Consensus 418 ~~~~~~~~~~~~~g~~~~v~~~~~~i~~l~~~~~~~~ 454 (459)
.|..++.-++..+|.+....|+-.++-.+.+++-..+
T Consensus 165 ~wa~iLPQ~LaaLG~vFa~aGvG~~ia~L~~~~i~~D 201 (313)
T COG3817 165 SWAAILPQMLAALGAVFASAGVGDVIAHLISEIIPAD 201 (313)
T ss_pred hHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHcccc
Confidence 3666777788889999999999888888888776544
No 110
>PLN02810 carbon-monoxide oxygenase
Probab=59.70 E-value=1.3e+02 Score=27.01 Aligned_cols=108 Identities=15% Similarity=0.107 Sum_probs=64.1
Q ss_pred cCcccCCC--CCcccCCchhhHHHHHhhhcccceeccchhhhccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCh
Q 042581 229 GGVKANHR--IPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSKFTKVSIVSFTLVTALNTALGFMGTKLFGPGVN 306 (459)
Q Consensus 229 ~~~~~~~~--~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~ 306 (459)
++..++.+ ...+||..+...++.++.. -+.+... +..+.+++.+|.+....=...++...+|+.....+-++
T Consensus 34 gG~aw~~~~~~~~FN~HPvlMv~Gfi~l~---geAIL~Y-r~~~~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~-- 107 (231)
T PLN02810 34 GGLAWEATNKNLIFNLHPVLMLIGLIIIG---GEAIMSY-KSLPLKKEVKKLIHLVLHAIALILGIFGICAAFKNHNE-- 107 (231)
T ss_pred CcccccCCCCCceeeehHHHHHHHHHHHh---hHHHHHh-hccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 34455432 3356777666655544332 2222222 33445567788888888888888888888776666443
Q ss_pred hhHhhcCCCchhHHHHHHHHHHHHhhhhccchhhhh
Q 042581 307 SQITLSMPQHLVVTKIALWATVLTPMTKYALEFAPL 342 (459)
Q Consensus 307 ~~il~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~ 342 (459)
..+.+-++-++|.......++.+|-+..+....+|.
T Consensus 108 ~~i~nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P~ 143 (231)
T PLN02810 108 SGIANLYSLHSWLGIGIISLYGIQWIYGFIVFFFPG 143 (231)
T ss_pred cCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 334443455667776677777777777665555553
No 111
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=57.01 E-value=2.2e+02 Score=28.65 Aligned_cols=47 Identities=11% Similarity=0.037 Sum_probs=34.6
Q ss_pred CCHHHHHHHHhchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 042581 121 RSYIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFS 167 (459)
Q Consensus 121 ~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 167 (459)
+...|.+++-+.||.+++..+..=+...++=+...+..+-.++-+..
T Consensus 89 ~hLAe~Cr~~Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~ 135 (503)
T KOG1291|consen 89 KHLAEICREEYPKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSN 135 (503)
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhC
Confidence 57889999999999999888877666666666666666655555543
No 112
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=53.61 E-value=2.5e+02 Score=28.22 Aligned_cols=312 Identities=11% Similarity=0.027 Sum_probs=142.7
Q ss_pred chHHHHHHHHHhhhhhccchhHHHHh-hhc--hH-HHHHHHHHHHHHHH-HHHHHHHHhhhCCCCCCHHHHHHHHhchhh
Q 042581 61 SFAHAVINMAGMLIGLGQLSTPYAIE-NGG--WA-SAFLLIGLGVICAY-SAHLLGKCLDKNPKSRSYIDIGQHAFGRKG 135 (459)
Q Consensus 61 s~~~~~~~l~~~~iG~Gil~lP~~~~-~~G--~~-g~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~y~~~~~~~~G~~~ 135 (459)
.....-+.+.....|+|=|=.|-... ++| |. +.+-.++.++..-. +...+. +.+ .++++++++.-.+.+
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava----~~~--g~~~~l~~rv~~~f~ 82 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALA----KVG--GGVDSLSTPIGKVAG 82 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHh----hcC--CCHHHHhhhcchHHH
Confidence 46667888999999999888885543 555 54 66555555444322 222222 222 478888875433323
Q ss_pred HhHHHHHHHHHHHHH--------HHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHH
Q 042581 136 RAAAATFIYLEIFMA--------LVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFL 207 (459)
Q Consensus 136 ~~~~~~~~~~~~~g~--------~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~ 207 (459)
..+. ..+.+ +.|- .++|-+.. +.++++ .+ .....+.++...+..-+++-++ +-+..+
T Consensus 83 ~~f~-~~i~l-~IGP~~aiPRtaavsfEm~i----~p~~~~-------~~-~~~~ifs~iFF~i~~~l~l~p~-klvd~i 147 (439)
T PRK15433 83 VLLA-TVCYL-AVGPLFATPRTATVSFEVGI----APLTGD-------SA-LPLFIYSLVYFAIVILVSLYPG-KLLDTV 147 (439)
T ss_pred HHHH-HHHHH-HHhhccccCCccccchhhee----eccCCc-------cc-HHHHHHHHHHHHHHHHHHcChh-hHHHHh
Confidence 2222 22211 1121 11221111 111111 00 0122334444555554443322 222233
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCcccCC-C-CCc--c----cC---CchhhHHHHHhhhcccceeccchhhhccCCccch
Q 042581 208 SVGGILMSVLIFLSVAFTAIFGGVKANH-R-IPV--L----NL---HKIPHISGLYIFSYAGHIVFPNLYKAMKDPSKFT 276 (459)
Q Consensus 208 s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~--~----~~---~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~~~ 276 (459)
..+-+-..+..++.++...+....+... + ... . ++ -+-..+++.+.|+-.....+- .+..+++++..
T Consensus 148 GK~LTP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~~i~--~~G~~~~~~~~ 225 (439)
T PRK15433 148 GNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAAR--SRGVTEARLLT 225 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--HcCCCCHHHHH
Confidence 3232333333333344444443222111 1 111 0 00 123446666766654333331 22355665433
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHHhh---cCCC-ChhhHhhcCCC---chhHHHHHHHHHHHHhhhhccchhhhhHHH
Q 042581 277 ----KVSIVSFTLVTALNTALGFMGTKL---FGPG-VNSQITLSMPQ---HLVVTKIALWATVLTPMTKYALEFAPLAIQ 345 (459)
Q Consensus 277 ----~~~~~~~~~~~~~Y~~~g~~gy~~---fg~~-~~~~il~~~~~---~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~ 345 (459)
++-.++.....++|...+..|... +++. ..+.++...-. +++...+.-+...+.++++-.-..+.+.+-
T Consensus 226 k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~ 305 (439)
T PRK15433 226 RYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEF 305 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777788888888888654 3222 23344433211 122333334445555566665556666666
Q ss_pred HHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHhhhHhHhHHHHhhhhHHHHH
Q 042581 346 LENHLPISLSARSKMMIRSSVGSLLLIIILTLALSLPYFQYVLSLTGSLVSICICLIFPCAFYIK 410 (459)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~Ga~~~~~~~~ilP~l~~l~ 410 (459)
+++.++ .+.+. .-.+....++.++. -.++.+++ +..+.+.++.|....+.
T Consensus 306 f~~~~~----isY~~-----~v~i~~l~S~~lSn--~G~~~II~----~s~PiL~~iYP~~IvLi 355 (439)
T PRK15433 306 FAQYVP----LSYRT-----LVFILGGFSMVVSN--LGLSQLIQ----ISVPVLTAIYPPCIALV 355 (439)
T ss_pred HHhhcC----CcHHH-----HHHHHHHHHHHHHH--hHHHHHHH----HHHHHHHHHhHHHHHHH
Confidence 666543 11111 12333333333332 13445555 44566667777766554
No 113
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=51.78 E-value=1.1e+02 Score=24.30 Aligned_cols=67 Identities=15% Similarity=0.051 Sum_probs=34.8
Q ss_pred CCchHHHHHHHHHhhhhhccchhHHHHhhh---c-hH-HHHHHHHHHHHH---HHHHHHHHHHhhhCCCCCCHHHH
Q 042581 59 GSSFAHAVINMAGMLIGLGQLSTPYAIENG---G-WA-SAFLLIGLGVIC---AYSAHLLGKCLDKNPKSRSYIDI 126 (459)
Q Consensus 59 ~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~---G-~~-g~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~y~~~ 126 (459)
+.+|..-...+.=..+|+..+.+...+... | -. ++.++++..++. .|-...+..+.+..++ .+|.++
T Consensus 38 k~pwK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG~Y~~~i~y~a~rg~~G-ysf~~I 112 (115)
T PF05915_consen 38 KIPWKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPGFYHTRIAYYAWRGYKG-YSFDDI 112 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhccHHHHHHHHHHHcCCCC-CCHhhC
Confidence 335666666666667777766666443311 2 23 443333333333 3444444555566666 777764
No 114
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=51.17 E-value=83 Score=26.40 Aligned_cols=24 Identities=8% Similarity=0.166 Sum_probs=14.0
Q ss_pred hHHHHhhhhHHHHHhcCCCcchhH
Q 042581 397 ICICLIFPCAFYIKISWPHISQRL 420 (459)
Q Consensus 397 ~~~~~ilP~l~~l~~~~~~~~~~~ 420 (459)
..+.-++|+++.++.+-+++++.+
T Consensus 72 ~l~~~vlP~~~l~~~~i~~~~~~~ 95 (156)
T PF08019_consen 72 LLLLGVLPALLLWRVRIKKRSWKR 95 (156)
T ss_pred HHHHHHHHHHHHHHHHhhcccHHH
Confidence 334456788887776655444433
No 115
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=49.95 E-value=2.5e+02 Score=27.14 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=29.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHhhcCC
Q 042581 275 FTKVSIVSFTLVTALNTALGFMGTKLFGPGVNSQITLSMP 314 (459)
Q Consensus 275 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~ 314 (459)
-++++..+...+...-+.+..+||.......++++...+.
T Consensus 46 T~~al~~tll~alp~pl~~~~~g~~L~~~~~~~~~~~~l~ 85 (340)
T PF12794_consen 46 TPRALLLTLLLALPLPLLLLAIGYLLQFAAWSSPFSVALG 85 (340)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHH
Confidence 4678888888888888889999998876555555555443
No 116
>TIGR00909 2A0306 amino acid transporter.
Probab=48.65 E-value=2.8e+02 Score=27.46 Aligned_cols=48 Identities=8% Similarity=-0.085 Sum_probs=40.6
Q ss_pred CCHHHHHHHHhchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Q 042581 121 RSYIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSG 168 (459)
Q Consensus 121 ~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 168 (459)
....+..++..|+++..+..+...+..++...+.....+..+..+-.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 264 APLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred cHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456677788889999999999999999999999999999998887544
No 117
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=48.33 E-value=3.1e+02 Score=27.79 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=36.1
Q ss_pred CCHHHHHHHHhch-hhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Q 042581 121 RSYIDIGQHAFGR-KGRAAAATFIYLEIFMALVSYTILLHDNLITVFSG 168 (459)
Q Consensus 121 ~~y~~~~~~~~G~-~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 168 (459)
..+.++.+..+|. ++..+......+..++...++....+..+..+-.+
T Consensus 289 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ard 337 (482)
T TIGR00907 289 QPIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRD 337 (482)
T ss_pred ChHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567777788887 67767777777777888888888888888777443
No 118
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=47.67 E-value=3e+02 Score=27.44 Aligned_cols=82 Identities=23% Similarity=0.246 Sum_probs=50.7
Q ss_pred hhccchhhhhHHHHHhhCCC----Cc--cc--h--hhHHHHHHHHHHHHHHHHHHHHhCc-hHHHHHHHhhhHhHhHHHH
Q 042581 333 TKYALEFAPLAIQLENHLPI----SL--SA--R--SKMMIRSSVGSLLLIIILTLALSLP-YFQYVLSLTGSLVSICICL 401 (459)
Q Consensus 333 ~s~p~~~~~~~~~~~~~~~~----~~--~~--~--~~~~~~~~~~~~~~~~~~~ia~~~~-~~~~~~~~~Ga~~~~~~~~ 401 (459)
.+++.+.++........+.. ++ +. + ..+.-|..........+.+.+...| -+....+.+|++...+.+-
T Consensus 284 ~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~ 363 (415)
T COG0814 284 LSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAP 363 (415)
T ss_pred HHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 67788888877665543321 11 00 1 1111122244444455566666666 4778888889899989999
Q ss_pred hhhhHHHHHhcCC
Q 042581 402 IFPCAFYIKISWP 414 (459)
Q Consensus 402 ilP~l~~l~~~~~ 414 (459)
++|.+++++-++.
T Consensus 364 i~~~ll~~~p~~~ 376 (415)
T COG0814 364 IIPALLFIKPRKL 376 (415)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987554
No 119
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=45.58 E-value=24 Score=22.62 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042581 276 TKVSIVSFTLVTALNTALGFMGTKLFGPG 304 (459)
Q Consensus 276 ~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~ 304 (459)
..+..+++.+..++.-+.|..-|.+||+.
T Consensus 5 e~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 5 SPALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred chhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 34566677777777777777778899865
No 120
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=45.17 E-value=22 Score=22.46 Aligned_cols=27 Identities=19% Similarity=0.381 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042581 278 VSIVSFTLVTALNTALGFMGTKLFGPG 304 (459)
Q Consensus 278 ~~~~~~~~~~~~Y~~~g~~gy~~fg~~ 304 (459)
+..+++.+..++..+.|...|.+||+.
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCC
Confidence 445666777777777788888999864
No 121
>CHL00020 psbN photosystem II protein N
Probab=41.27 E-value=22 Score=22.43 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042581 278 VSIVSFTLVTALNTALGFMGTKLFGPG 304 (459)
Q Consensus 278 ~~~~~~~~~~~~Y~~~g~~gy~~fg~~ 304 (459)
+..+++.+..++.-+.|..-|.+||+.
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 455666677777777777778888865
No 122
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=41.15 E-value=2.3e+02 Score=29.30 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=17.1
Q ss_pred HhHHHHhhhhHHHHHhcCCCcchhHHH
Q 042581 396 SICICLIFPCAFYIKISWPHISQRLLI 422 (459)
Q Consensus 396 ~~~~~~ilP~l~~l~~~~~~~~~~~~~ 422 (459)
...+..++|+++.++.+-+++++.+..
T Consensus 126 ~~~~l~~lp~~~~~~~~~~~~~~~~~~ 152 (522)
T PRK09598 126 YIVVLGVLPGYIIYKIPLKNSSKKAPF 152 (522)
T ss_pred HHHHHHHHHHHHHHHhccccccHHHHH
Confidence 445556799999888765444443444
No 123
>PRK09928 choline transport protein BetT; Provisional
Probab=40.77 E-value=4.8e+02 Score=27.88 Aligned_cols=162 Identities=15% Similarity=0.061 Sum_probs=77.5
Q ss_pred CCCCCchHHHHHHHHHhhhhhccchh----HHH-Hh-----hhchH-----HHHHHHHHHHHHHHHHHHHHH-----Hhh
Q 042581 56 SHAGSSFAHAVINMAGMLIGLGQLST----PYA-IE-----NGGWA-----SAFLLIGLGVICAYSAHLLGK-----CLD 115 (459)
Q Consensus 56 ~~~~~s~~~~~~~l~~~~iG~Gil~l----P~~-~~-----~~G~~-----g~~~~~~~~~~~~~~~~~l~~-----~~~ 115 (459)
.++.-|.++-+..++.+-+|.|++.- |.. +. ..|-. +....++=+-+..++.+.++- ...
T Consensus 89 ~kPefS~~sW~aMLFaAGmGigLmfwgvaEP~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalvglalAYf~y 168 (679)
T PRK09928 89 SKPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSY 168 (679)
T ss_pred CCCCCCcchHHHHHHHHhhhhhheeehHHhHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 34667777788899999999998642 322 11 11211 122222223333333333332 222
Q ss_pred hCCCCCCHHHHHHHHhchh----hHhHHHHH-HHHHHHHHHHHHHHHHH---hhhhhhccCCccCccccccchhhHHHHH
Q 042581 116 KNPKSRSYIDIGQHAFGRK----GRAAAATF-IYLEIFMALVSYTILLH---DNLITVFSGTSLDLSWAKLSTSQMLTVI 187 (459)
Q Consensus 116 ~~~~~~~y~~~~~~~~G~~----~~~~~~~~-~~~~~~g~~~~y~i~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~i 187 (459)
+++...+.+...+-.+|++ .+.+++++ ++...+|...+.-.... .-++.+++... .. ..+..+++
T Consensus 169 r~~~pl~issal~pllG~ri~G~~G~~IDi~av~~tvfGiaTSLGlGv~qi~~GL~~lfGi~~-~~------~~q~~ii~ 241 (679)
T PRK09928 169 RYNLPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIPE-SL------AAQAALIA 241 (679)
T ss_pred cCCCCCchhHhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-cc------HHHHHHHH
Confidence 3333356677666666642 23455554 44455555544433333 33333333211 11 12333444
Q ss_pred HHHHHHhhcccCCC-CChhHHHHHHHHHHHHHHHHhhh
Q 042581 188 AVLIALPSLWLRDL-SSISFLSVGGILMSVLIFLSVAF 224 (459)
Q Consensus 188 ~~~~~~pl~~~~~l-~~l~~~s~~~~~~~~~~~~~~~~ 224 (459)
...++..++....+ |.++++|-+.+...+..++.+++
T Consensus 242 vi~~i~~~S~~sGl~KGIk~LS~lN~~La~~LllfVli 279 (679)
T PRK09928 242 LSVIIATISVTSGVNKGIRVLSELNVLLALGLILFVLF 279 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHheeee
Confidence 44444555555555 55666666665554444444433
No 124
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=39.68 E-value=6.3e+02 Score=28.90 Aligned_cols=28 Identities=14% Similarity=0.119 Sum_probs=19.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 042581 275 FTKVSIVSFTLVTALNTALGFMGTKLFG 302 (459)
Q Consensus 275 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fg 302 (459)
-++++.+++..+.-.=+++...||..+.
T Consensus 520 T~~al~~t~l~alP~pl~~~~~g~~l~~ 547 (1109)
T PRK10929 520 TLRTVFWSILVASPLPVLWAALGYGLQN 547 (1109)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 3567777777776666677788886554
No 125
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=39.32 E-value=2.8e+02 Score=24.72 Aligned_cols=39 Identities=3% Similarity=-0.167 Sum_probs=25.7
Q ss_pred CCchhHHHHHHHHHHHHhhhhccchhhhhHHHHHhhCCC
Q 042581 314 PQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPI 352 (459)
Q Consensus 314 ~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~ 352 (459)
+..+....-.++...+..+.++|...+=.-.-+..-+.+
T Consensus 52 ~~~e~f~~~lk~s~~~g~~~~~P~i~yqiw~Fi~PgLy~ 90 (215)
T TIGR00945 52 SPTEPFFTYIKLSLIVGIILSSPVILYQIWAFILPGLYE 90 (215)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH
Confidence 444566667788888899999998776444444433333
No 126
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=39.03 E-value=2.3e+02 Score=23.74 Aligned_cols=68 Identities=12% Similarity=0.102 Sum_probs=46.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHhhcCCCchhHHHHHHHHHHHHhhhhccchhhhh
Q 042581 273 SKFTKVSIVSFTLVTALNTALGFMGTKLFGPGVNSQITLSMPQHLVVTKIALWATVLTPMTKYALEFAPL 342 (459)
Q Consensus 273 ~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~ 342 (459)
||.+|.+-...-.+.++-..+|+.....+.++. +..+-++-+.|...+..+++.+|-+..+....+|.
T Consensus 44 k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 44 KLLMKLIHAGLHILAFILAIISVVAVFVFHNAK--NIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 456777777777777777778887666664442 33333344567777777788888888777766664
No 127
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=37.70 E-value=94 Score=27.03 Aligned_cols=56 Identities=13% Similarity=0.134 Sum_probs=34.8
Q ss_pred hhhhHHHHHhcCCCcchhHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhccccccC
Q 042581 402 IFPCAFYIKISWPHISQRLLILNVTLIGFGFLLGFSGTTFSLKSLIHTLQDAHGTR 457 (459)
Q Consensus 402 ilP~l~~l~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~i~~l~~~~~~~~~~~ 457 (459)
++|.++=+...+|++....+.-.+...++|++-+++|......+..+-+++.+.++
T Consensus 82 ~ip~~~G~~s~~rN~i~~l~~y~~~~~~~gl~pl~~g~~~~~~~~~~y~~~~~~~~ 137 (186)
T PF07086_consen 82 LIPSLLGLLSLRRNNISLLRLYMIGSSLFGLLPLIYGAMYYFPEVQQYYRHGKAYR 137 (186)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 34555555555554444444445666677777777777777777777766666544
No 128
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=37.29 E-value=2.1e+02 Score=22.59 Aligned_cols=63 Identities=17% Similarity=0.139 Sum_probs=41.9
Q ss_pred CCCCchHHHHHHHHHhhhhhccchhHHHHhhhchH-HHHHH-HHHHHHHHHHHHHHHHHhhhCCC
Q 042581 57 HAGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWA-SAFLL-IGLGVICAYSAHLLGKCLDKNPK 119 (459)
Q Consensus 57 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~~~~-~~~~~~~~~~~~~l~~~~~~~~~ 119 (459)
-+..+.-+......-+....=++++|.+.-..+|. ....+ +...+....+...+.+..+..|+
T Consensus 15 ~rGlT~~El~~~~~~~~~~gl~~g~~l~~~~~~w~~~p~~~lig~~l~v~~gg~~l~rlKRGrPe 79 (111)
T TIGR03750 15 FRGLTADELGVAAGVGLAAGLVLGLLLALLAGPWALIPTGALLGPILVVLIGGKLLARLKRGKPE 79 (111)
T ss_pred ecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcCCCc
Confidence 46666666666665555555568899776666786 54444 44555567778888888777776
No 129
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=37.28 E-value=1.8e+02 Score=30.18 Aligned_cols=15 Identities=13% Similarity=0.158 Sum_probs=10.4
Q ss_pred HHHhhhhHHHHHhcC
Q 042581 399 ICLIFPCAFYIKISW 413 (459)
Q Consensus 399 ~~~ilP~l~~l~~~~ 413 (459)
+.-++|+++.++.+-
T Consensus 129 ~~gvlP~~~~~~~~i 143 (545)
T PRK11598 129 LSGVLPALIACWIKI 143 (545)
T ss_pred HHHHHHHHHHHhhhh
Confidence 334689988877665
No 130
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=37.01 E-value=95 Score=27.13 Aligned_cols=62 Identities=11% Similarity=0.110 Sum_probs=45.2
Q ss_pred HHHHhhhHhHhHHHHhhhhHHHHHhcCCC----------cchhHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 042581 387 VLSLTGSLVSICICLIFPCAFYIKISWPH----------ISQRLLILNVTLIGFGFLLGFSGTTFSLKSLIH 448 (459)
Q Consensus 387 ~~~~~Ga~~~~~~~~ilP~l~~l~~~~~~----------~~~~~~~~~~~~~~~g~~~~v~~~~~~i~~l~~ 448 (459)
..-+.|++.+.-+..++|+.+.+..++++ .+|..-...++...+|++..+++..-|...+.+
T Consensus 46 ~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 46 EVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILFAAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred hheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33445667777777788999999988772 234455677777888888888888888877776
No 131
>PF00950 ABC-3: ABC 3 transport family; InterPro: IPR001626 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 3 of ABC transporters.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016020 membrane
Probab=34.06 E-value=3.8e+02 Score=24.68 Aligned_cols=50 Identities=26% Similarity=0.425 Sum_probs=26.7
Q ss_pred HHHhhhHhHhHHHHhhhhHHHHHhcCCCcchhHHHHHHHHHhhhhhhhhhhhHHHH
Q 042581 388 LSLTGSLVSICICLIFPCAFYIKISWPHISQRLLILNVTLIGFGFLLGFSGTTFSL 443 (459)
Q Consensus 388 ~~~~Ga~~~~~~~~ilP~l~~l~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~i 443 (459)
+..+|.+....+ .++|+..-....++ .+...++. .++|++....|.+-+.
T Consensus 184 ~~~vG~lLv~al-lv~Paa~A~~~s~~--~~~~~~~s---~l~~~~~~~~G~~lS~ 233 (257)
T PF00950_consen 184 VKAVGVLLVFAL-LVIPAATARLLSRS--FRRMIILS---VLIGLLSSVLGLLLSY 233 (257)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhCC--HHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 345555554444 57899998877664 22223333 4445555555554443
No 132
>CHL00182 tatC Sec-independent translocase component C; Provisional
Probab=33.81 E-value=3.8e+02 Score=24.59 Aligned_cols=35 Identities=0% Similarity=-0.210 Sum_probs=23.3
Q ss_pred CchhHHHHHHHHHHHHhhhhccchhhhhHHHHHhh
Q 042581 315 QHLVVTKIALWATVLTPMTKYALEFAPLAIQLENH 349 (459)
Q Consensus 315 ~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~ 349 (459)
..+....-.+....+....+.|...+=.-.-+..-
T Consensus 74 ~~E~f~~~ikls~~~g~~~a~P~i~yqiw~Fi~Pg 108 (249)
T CHL00182 74 PGEYFFSSIKISFYTGLLISSPFIIYQIILFILPG 108 (249)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34456666788888888999998776444444433
No 133
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=32.53 E-value=5.4e+02 Score=26.00 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=39.8
Q ss_pred HHHHHHHHhchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Q 042581 123 YIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSG 168 (459)
Q Consensus 123 y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~ 168 (459)
..++.+..+|+++..++.+...+..++...++....+..+..+-.+
T Consensus 270 ~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amard 315 (473)
T TIGR00905 270 MAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKD 315 (473)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6788889999999999999899999999999999988888877544
No 134
>PLN02351 cytochromes b561 family protein
Probab=32.28 E-value=3.9e+02 Score=24.32 Aligned_cols=96 Identities=11% Similarity=0.030 Sum_probs=53.0
Q ss_pred ccCCchhhHHHHHhhhcccceeccchhhhccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHhhcCCCchhH
Q 042581 240 LNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSKFTKVSIVSFTLVTALNTALGFMGTKLFGPGVNSQITLSMPQHLVV 319 (459)
Q Consensus 240 ~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~ 319 (459)
+||..+...++.++.. -+.+. +++-.+.+++.+|.+....-...++...+|+.. .|-++ .+.+.+-++-++|.
T Consensus 51 fn~HP~lMviGfi~L~---geAIL-vYR~~~~~~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh~~-~~~i~nlySLHSWl 123 (242)
T PLN02351 51 AVLHPLLMVIGFILIS---GEAIL-VHRWLPGSRKTKKSVHLWLQGLALASGVFGIWT--KFHGQ-DGIVANFYSLHSWM 123 (242)
T ss_pred ecccHHHHHHHHHHHH---HHHHH-HhhcccccchHHHHHHHHHHHHHHHHHHHHHHH--HHhcc-cCCccchhHHHHHH
Confidence 3566555544443322 22221 234456666678888888777777777777766 44222 11122222335677
Q ss_pred HHHHHHHHHHHhhhhccchhhhh
Q 042581 320 TKIALWATVLTPMTKYALEFAPL 342 (459)
Q Consensus 320 ~~i~~~~~~~~~~~s~p~~~~~~ 342 (459)
......++.+|-+..+....+|.
T Consensus 124 Gl~tv~Lf~lQwv~Gf~~F~~P~ 146 (242)
T PLN02351 124 GLICVSLFGAQWLTGFMSFWHRG 146 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Confidence 76667777777776665544443
No 135
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=32.25 E-value=2.3e+02 Score=24.23 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=37.9
Q ss_pred hhhhhccchhHHHHh--hhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchhhHhHHHHHHHHH
Q 042581 72 MLIGLGQLSTPYAIE--NGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRKGRAAAATFIYLE 146 (459)
Q Consensus 72 ~~iG~Gil~lP~~~~--~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~~~~~~~~~~~~~ 146 (459)
+-+|.+++..|++.. .-+++ -.+.++..++++..++.+..-+.++ .-|.|.+.+.++..+..
T Consensus 47 T~v~P~~ll~Pf~~g~wk~t~~G~~igi~~~gv~Si~aAllY~~~l~k-------------~~g~W~Gi~YG~~~W~i 111 (173)
T PF11085_consen 47 TEVGPNFLLEPFALGDWKNTWLGNLIGIVFIGVFSIVAALLYYALLKK-------------FKGPWPGILYGLAWWAI 111 (173)
T ss_pred cccccChhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------hcccchHHHHHHHHHHH
Confidence 457899999998865 23344 2344455566666555554444433 34578887777766654
No 136
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=31.16 E-value=4.4e+02 Score=26.32 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=33.0
Q ss_pred HhchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 042581 130 AFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVF 166 (459)
Q Consensus 130 ~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~ 166 (459)
.+|.++.+++.+++.++.+.+..++....-+.+..++
T Consensus 302 ~~g~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 302 VLGSWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4577899999999999999999999999999988887
No 137
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=31.16 E-value=1.2e+02 Score=25.32 Aligned_cols=63 Identities=13% Similarity=0.025 Sum_probs=38.9
Q ss_pred HhhhHhHhHHHHhhhhHHHHHhcCCCc-chhHHHHHHHHHhhhhhhhhhhhHHHHHHHHH-Hhcc
Q 042581 390 LTGSLVSICICLIFPCAFYIKISWPHI-SQRLLILNVTLIGFGFLLGFSGTTFSLKSLIH-TLQD 452 (459)
Q Consensus 390 ~~Ga~~~~~~~~ilP~l~~l~~~~~~~-~~~~~~~~~~~~~~g~~~~v~~~~~~i~~l~~-~~~~ 452 (459)
..|+..+....|+.|.+.+....+..+ -...+-...+-+++|+..+++++..+.....+ +.+.
T Consensus 34 ~~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~~~pflSf~lG~~~m~~~~~~~~k~~y~kk~~~ 98 (152)
T PF07954_consen 34 NLGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPRQKPFLSFLLGLGAMMAGSQLAGKYQYNKKLNS 98 (152)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhcccccCCcCCccCcchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566667788888888775222211 11111445667888999999888877776666 4444
No 138
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=30.04 E-value=5.4e+02 Score=25.65 Aligned_cols=133 Identities=18% Similarity=0.063 Sum_probs=72.1
Q ss_pred CChhhHhhcCCCchhHHHHHHHHHHHHhhhhccchhhhhHHHHHhhCC----CCccchhhHHHHHHHHHHHHHHHHHHHH
Q 042581 304 GVNSQITLSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLP----ISLSARSKMMIRSSVGSLLLIIILTLAL 379 (459)
Q Consensus 304 ~~~~~il~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ia~ 379 (459)
+..++.+.+++.......++.......++..||+... +.+.+.+..+ ....++.-.-... +....+. .+--.
T Consensus 268 ~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~-l~~~~~~~~~~~~~~s~~r~~~itl~l-l~~~~l~--ai~~p 343 (411)
T KOG1305|consen 268 SILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMN-LDELLFPYQPGLTSFSGKRHFVITLLL-LIFTFLL--AIFVP 343 (411)
T ss_pred cccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHH-HHHHhcccCCCCCCccceehhHHHHHH-HHHHHHH--HHHhc
Confidence 3445556668887777888889999999999999998 5556555553 6666654443311 1111111 11112
Q ss_pred hCchHHHHHHHhhhHhHhHHHHhhhhHHHH--HhcCCCcchhHHHHHHHHHhhhhhhhhhhhH
Q 042581 380 SLPYFQYVLSLTGSLVSICICLIFPCAFYI--KISWPHISQRLLILNVTLIGFGFLLGFSGTT 440 (459)
Q Consensus 380 ~~~~~~~~~~~~Ga~~~~~~~~ilP~l~~l--~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~ 440 (459)
.+.++-.+++.+++.+..++.-.+=-+.-. +.+.+...+..++++..+.++|+...+....
T Consensus 344 ~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~ 406 (411)
T KOG1305|consen 344 SIGTIFGFVGATSSTSISFILPALYYLKASKKKSREPLGALIFLILGVLLSIIGVAVMIYDLL 406 (411)
T ss_pred cHHHHHHHhhhhhhhhhHHHHHHHhhheeeccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222333334444433333322221122222 3333334455677788888888877766443
No 139
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=29.19 E-value=4.4e+02 Score=23.93 Aligned_cols=108 Identities=14% Similarity=0.128 Sum_probs=65.2
Q ss_pred cCcccCCCC-CcccCCchhhHHHHHhhhcccceeccchhhhcc-CCccchhHHHHHHHHHHHHHHHHHHHHHhhcCCCCh
Q 042581 229 GGVKANHRI-PVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMK-DPSKFTKVSIVSFTLVTALNTALGFMGTKLFGPGVN 306 (459)
Q Consensus 229 ~~~~~~~~~-~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k-~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~ 306 (459)
++..++.+. ..+|+..+...+|.+.+ .-+. .-+++-.+ ..|+.+|.+....=.+.+.-.++|+.....+-+...
T Consensus 43 ~Glaw~~~~~~~fnlHP~lMviGfI~l---~GeA-iL~YR~~r~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~ 118 (245)
T KOG1619|consen 43 GGLAWSSSPNKEFNLHPVLMVIGFIYL---QGEA-ILIYRVFRYTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVG 118 (245)
T ss_pred CccCCCCCcchhcCcchHHHHHHHHHh---ccce-eeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 345555444 34555566555555432 3333 33444444 445789999998888888888888888776654433
Q ss_pred hhHhhcCCCchhHHHHHHHHHHHHhhhhccchhhhh
Q 042581 307 SQITLSMPQHLVVTKIALWATVLTPMTKYALEFAPL 342 (459)
Q Consensus 307 ~~il~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~ 342 (459)
+-+-++-++|.......++.+|-...|....+|.
T Consensus 119 --i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg 152 (245)
T KOG1619|consen 119 --IANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPG 152 (245)
T ss_pred --ccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 2222233567776677777777777665544444
No 140
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=29.17 E-value=1.3e+02 Score=22.24 Aligned_cols=54 Identities=11% Similarity=0.236 Sum_probs=27.0
Q ss_pred HHHhhhcccceeccchhhhccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042581 250 GLYIFSYAGHIVFPNLYKAMKDPSKFTKVSIVSFTLVTALNTALGFMGTKLFGP 303 (459)
Q Consensus 250 ~~~~fsf~~~~~i~~i~~e~k~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~ 303 (459)
|++..+-.|.....+..+.-.+|.+..+-....+.++.-+-+++|++.|..||.
T Consensus 18 GIiLL~~ACIFAfidFSK~~s~~~~~~wRalSii~FIlG~vl~lGilifs~y~~ 71 (91)
T PHA02680 18 GVLLLTAACVFAFVDFSKNTSNVTDYVWRALSVTCFIVGAVLLLGLFVFSMYRK 71 (91)
T ss_pred HHHHHHHHHHHhhhhhhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333333334444455555554555533322223333344455677888888873
No 141
>PRK11281 hypothetical protein; Provisional
Probab=28.90 E-value=9.3e+02 Score=27.64 Aligned_cols=29 Identities=14% Similarity=0.175 Sum_probs=22.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 042581 275 FTKVSIVSFTLVTALNTALGFMGTKLFGP 303 (459)
Q Consensus 275 ~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~ 303 (459)
-++++.+++..+....+.+..+||+.+..
T Consensus 542 T~~al~~t~l~alp~~l~~~~~g~~~~~~ 570 (1113)
T PRK11281 542 TPKAILITLLLALPVTLIFLAVGLILLTD 570 (1113)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46788888888888888888888877653
No 142
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=28.54 E-value=5.3e+02 Score=25.97 Aligned_cols=30 Identities=3% Similarity=0.064 Sum_probs=21.8
Q ss_pred cCCccchhHHHHHHHHHHHHHHHHHHHHHh
Q 042581 270 KDPSKFTKVSIVSFTLVTALNTALGFMGTK 299 (459)
Q Consensus 270 k~p~~~~~~~~~~~~~~~~~Y~~~g~~gy~ 299 (459)
||++|.++....+..+...+-..+++.-+.
T Consensus 311 ~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~ 340 (455)
T COG0534 311 GNYKRARRAARLALKLSLLIALLIALLLLL 340 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466678888888888877777766666555
No 143
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=28.42 E-value=4.7e+02 Score=27.65 Aligned_cols=56 Identities=18% Similarity=0.123 Sum_probs=36.8
Q ss_pred hccchhHHHH--hhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhch
Q 042581 76 LGQLSTPYAI--ENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGR 133 (459)
Q Consensus 76 ~Gil~lP~~~--~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~ 133 (459)
.++......+ .+..+. .++.+++..+++..+.+...+... +|. ..+..+.+..+|-
T Consensus 369 ~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~-~P~-~~~~~~sqli~g~ 427 (624)
T PF03169_consen 369 LAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGI-NPV-SGLNILSQLIFGL 427 (624)
T ss_pred HHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCC-Ccc-hhhhHHHHHHHHH
Confidence 3456666667 344455 566666677777777777777654 555 6777777777764
No 144
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=28.26 E-value=6.1e+02 Score=25.27 Aligned_cols=99 Identities=14% Similarity=0.250 Sum_probs=56.7
Q ss_pred Hhhhhhcc--chhHHHHhhhc---hH--HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHH-HHHHHHhchhhHhHHHHH
Q 042581 71 GMLIGLGQ--LSTPYAIENGG---WA--SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYI-DIGQHAFGRKGRAAAATF 142 (459)
Q Consensus 71 ~~~iG~Gi--l~lP~~~~~~G---~~--g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~-~~~~~~~G~~~~~~~~~~ 142 (459)
-..+|+.+ +..|......| |- ..+......+........+-+..++.++.++-. +--+..++++--|.....
T Consensus 147 ~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~~~~~~~~~v~~~~~~W~lsll 226 (417)
T COG2223 147 AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKPQLPAQLKAVFSNKDTWLLSLL 226 (417)
T ss_pred cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccccchhHHHHHhcCcchHHHHHH
Confidence 56677776 56788888888 53 233333333333333333333333223323333 344456666666666666
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCCc
Q 042581 143 IYLEIFMALVSYTILLHDNLITVFSGTS 170 (459)
Q Consensus 143 ~~~~~~g~~~~y~i~~~~~l~~~~~~~~ 170 (459)
+..+ +|.-+++......++++.++..+
T Consensus 227 Y~~t-FG~Fvgfs~~l~~~~~~~fg~~~ 253 (417)
T COG2223 227 YFAT-FGGFVGFSAYLPMYLVTQFGLSP 253 (417)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHhcCCCh
Confidence 5544 68888888888888888766544
No 145
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=27.48 E-value=4.9e+02 Score=23.97 Aligned_cols=38 Identities=3% Similarity=-0.178 Sum_probs=24.6
Q ss_pred CchhHHHHHHHHHHHHhhhhccchhhhhHHHHHhhCCC
Q 042581 315 QHLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPI 352 (459)
Q Consensus 315 ~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~ 352 (459)
..+....-.++...+..+.+.|...+=.-.-+..-+.+
T Consensus 64 ~~e~f~~~lk~sl~~g~~la~P~ilyqiw~Fi~PgLy~ 101 (258)
T PRK10921 64 VASPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYK 101 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 33455556788888889999998876444444443333
No 146
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=26.92 E-value=2.1e+02 Score=29.04 Aligned_cols=158 Identities=14% Similarity=0.095 Sum_probs=86.5
Q ss_pred chhhHhHHHHHHHHHHHHHHHHH-HHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCC-ChhHHHH
Q 042581 132 GRKGRAAAATFIYLEIFMALVSY-TILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLS-SISFLSV 209 (459)
Q Consensus 132 G~~~~~~~~~~~~~~~~g~~~~y-~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~-~l~~~s~ 209 (459)
+|.+.+++.+...+.+++..++- .+..+.-+..++|..-+ ..+..++..+....+.|=-++.+-+ .+..++.
T Consensus 340 ~RAgvFfi~~~f~laql~~NISan~vaagnDl~~L~Pkyin------IrRG~~~~a~ia~a~~PWnll~SSs~F~t~Lss 413 (572)
T KOG2466|consen 340 ARAGVFFIGFGFALAQLGTNISANSVAAGNDLSALLPKYIN------IRRGALICAIIAWAICPWNLLSSSSKFLTALSS 413 (572)
T ss_pred cchhhhHHHHHHHHHHHhcchhccccccchhhHhhCcceEE------ecccHHHHHHHHHHhCchHHhccccHHHHHHHH
Confidence 35778888888888888887766 55556667777666532 1233444555577777776665543 3344444
Q ss_pred HHHHHHHHHHHHhhhhhhc-cC-cccCC-----CCCcccCCchhhHHHHHhhhcccceeccchhhhccC----Ccc----
Q 042581 210 GGILMSVLIFLSVAFTAIF-GG-VKANH-----RIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKD----PSK---- 274 (459)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~-~~-~~~~~-----~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~----p~~---- 274 (459)
.+++..-+.-+++.=++.. .+ .+..+ +...--+..=.+-=.++.|-.++.+++|-+..|..+ |+-
T Consensus 414 ysvfLspiagViiaDyF~iRk~~~~i~~~y~~~~g~yY~~~~G~NwRA~vA~vcG~~P~lpG~a~~V~~~~~v~~G~~~~ 493 (572)
T KOG2466|consen 414 YSVFLSPIAGVIIADYFLIRKGYYKITHLYSLSKGSYYYFKKGINWRAFVAYVCGMAPNLPGFAGSVGADIKVPDGAVKL 493 (572)
T ss_pred HHHHHhhccceEeehhheeecceeeeeeeeecCCCceeeeecCccHHHHHHHHhccccCCcchhhhcCcccccccceEEE
Confidence 4443332222222111221 11 11111 111100011112234566777788999999988774 331
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 042581 275 FTKVSIVSFTLVTALNTALGF 295 (459)
Q Consensus 275 ~~~~~~~~~~~~~~~Y~~~g~ 295 (459)
+-.....++.+.+..|..+..
T Consensus 494 yy~~yf~sf~isf~vYwiLc~ 514 (572)
T KOG2466|consen 494 YYLDYFFSFLISFLVYWILCL 514 (572)
T ss_pred EechHHHHHHHHHHHHHHHHh
Confidence 345778888888888886543
No 147
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=25.88 E-value=5.2e+02 Score=24.05 Aligned_cols=35 Identities=17% Similarity=0.087 Sum_probs=16.1
Q ss_pred HhCchHHHHHHHhhhHhHhHHHHhhhhHHHHHhcCC
Q 042581 379 LSLPYFQYVLSLTGSLVSICICLIFPCAFYIKISWP 414 (459)
Q Consensus 379 ~~~~~~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~~ 414 (459)
+..+..+...++.=+-.+..+.- +=.++++|-+|.
T Consensus 214 is~~~~G~a~af~lSQ~~vvISt-lgGI~il~E~Kt 248 (269)
T PF06800_consen 214 ISAQKNGVATAFTLSQLGVVIST-LGGIFILKEKKT 248 (269)
T ss_pred HhHHhccchhhhhHHhHHHHHHH-hhhheEEEecCc
Confidence 33455555555554444443332 234445554433
No 148
>PF14256 YwiC: YwiC-like protein
Probab=25.69 E-value=3.6e+02 Score=21.81 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=23.9
Q ss_pred chHHHHHHHhhhHhHhHHHHhhhhHHHHHhcCCCcchhHH
Q 042581 382 PYFQYVLSLTGSLVSICICLIFPCAFYIKISWPHISQRLL 421 (459)
Q Consensus 382 ~~~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~~~~~~~~~ 421 (459)
|....+.-+.+.+++- ....|...++|.+++++.+..+
T Consensus 23 ~~w~~~~L~~aw~~~y--l~~~p~~~~~k~r~~~~~~~~~ 60 (129)
T PF14256_consen 23 PSWAHLPLLLAWLFGY--LAFYPFLLWLKQRRRRRPRYLK 60 (129)
T ss_pred ccHHHHHHHHHHHHHH--HHHHHHHHHHhcccccchhHHH
Confidence 6666666666655533 2346999999987754444433
No 149
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=25.60 E-value=42 Score=25.85 Aligned_cols=9 Identities=44% Similarity=0.619 Sum_probs=5.3
Q ss_pred hhhccchhH
Q 042581 74 IGLGQLSTP 82 (459)
Q Consensus 74 iG~Gil~lP 82 (459)
||.|++.++
T Consensus 9 Iglgv~~~G 17 (104)
T PF11460_consen 9 IGLGVFLLG 17 (104)
T ss_pred ecHHHHHHH
Confidence 556666555
No 150
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=24.47 E-value=5.1e+02 Score=23.13 Aligned_cols=110 Identities=15% Similarity=0.070 Sum_probs=61.1
Q ss_pred cCcccCCCCCcccCCchhhHHHHHhhhcccceeccchhhhccCCc-cchhHHHHHHHHHHHHHHHHHHHHHhhcCCCChh
Q 042581 229 GGVKANHRIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPS-KFTKVSIVSFTLVTALNTALGFMGTKLFGPGVNS 307 (459)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~-~~~~~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~ 307 (459)
++..++.+...+||..+...++.+.+.= +. .-+++..++++ +..|.+....-...++...+|+.....+-++.+.
T Consensus 13 gG~~~~~~~~~Fn~HP~lM~~Gfi~l~g---eA-iLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~ 88 (214)
T cd08764 13 GGFSWTGPGLQFNWHPLLMVLGLIFLYG---NS-ILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKP 88 (214)
T ss_pred CccccCCCCceEeecHHHHHHHHHHHHH---HH-HHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3445554444567766666555543221 11 11122223333 3456677777777777777777665544444333
Q ss_pred hHhhcCCCchhHHHHHHHHHHHHhhhhccchhhhh
Q 042581 308 QITLSMPQHLVVTKIALWATVLTPMTKYALEFAPL 342 (459)
Q Consensus 308 ~il~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~ 342 (459)
.+.+-++.++|......+++.++.+..+....+|.
T Consensus 89 ~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~ 123 (214)
T cd08764 89 PIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPG 123 (214)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44444455677777777777788777775555553
No 151
>PRK09928 choline transport protein BetT; Provisional
Probab=22.13 E-value=9.9e+02 Score=25.62 Aligned_cols=33 Identities=18% Similarity=0.058 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHHHhhcccCCCCChhHHHHHHH
Q 042581 180 TSQMLTVIAVLIALPSLWLRDLSSISFLSVGGI 212 (459)
Q Consensus 180 ~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 212 (459)
.+..|.++..++.+.+.....++.++..+.++-
T Consensus 452 ~RifW~v~ig~la~~LL~~GGL~aLQt~sii~a 484 (679)
T PRK09928 452 LRVFWSVAIGLLTLGMLMTNGISALQNTTVIMG 484 (679)
T ss_pred eeeHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 466777777777777776777777766666653
No 152
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=21.97 E-value=8.2e+02 Score=25.02 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHHHHHHHHHhhhh
Q 042581 180 TSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILMSVLIFLSVAFT 225 (459)
Q Consensus 180 ~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~ 225 (459)
.+..|.++..++...+....+++.++..+.++-+-...+++.+.+.
T Consensus 432 ~ri~W~~~~~~~a~~ll~~ggl~~lq~~~ii~~lP~~~v~~~~~~~ 477 (485)
T PF02028_consen 432 LRIFWGLIIGALAIVLLLIGGLDALQSASIIGGLPFSFVMLLMCIS 477 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777776666666778888777777654444444444433
No 153
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=21.51 E-value=4.5e+02 Score=29.26 Aligned_cols=17 Identities=0% Similarity=0.026 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042581 96 LIGLGVICAYSAHLLGK 112 (459)
Q Consensus 96 ~~~~~~~~~~~~~~l~~ 112 (459)
+++++++++.-.+++..
T Consensus 942 IiwIsi~SyilV~~at~ 958 (1096)
T TIGR00927 942 IMWIAMFSYLMVWWAHQ 958 (1096)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 154
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=20.72 E-value=3.5e+02 Score=19.82 Aligned_cols=46 Identities=17% Similarity=0.192 Sum_probs=24.9
Q ss_pred HHHHHHHhhhHhHhHHHHhhhhHHHHHhcCC--CcchhHHHHHHHHHhh
Q 042581 384 FQYVLSLTGSLVSICICLIFPCAFYIKISWP--HISQRLLILNVTLIGF 430 (459)
Q Consensus 384 ~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~~--~~~~~~~~~~~~~~~~ 430 (459)
.-.+...-+++++.-+ .++|..++..+++| +.+++++.....+..+
T Consensus 14 ~l~vl~~y~~l~~~YL-lVvP~~l~~wm~~RWy~~~~~Er~~~y~lvF~ 61 (81)
T PF10716_consen 14 TLLVLLAYAALAGLYL-LVVPLILYFWMNKRWYVMSSFERLFMYFLVFL 61 (81)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444544433 46788887766544 4555666655554443
No 155
>PF11345 DUF3147: Protein of unknown function (DUF3147); InterPro: IPR021493 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=20.15 E-value=4.3e+02 Score=20.64 Aligned_cols=10 Identities=10% Similarity=0.125 Sum_probs=4.2
Q ss_pred hHHHHHhcCC
Q 042581 405 CAFYIKISWP 414 (459)
Q Consensus 405 ~l~~l~~~~~ 414 (459)
+++.....++
T Consensus 41 sl~~~~~~~~ 50 (108)
T PF11345_consen 41 SLLILGIQHG 50 (108)
T ss_pred HHHHHHHhcc
Confidence 4444444433
No 156
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=20.06 E-value=2.8e+02 Score=18.51 Aligned_cols=28 Identities=11% Similarity=0.039 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042581 277 KVSIVSFTLVTALNTALGFMGTKLFGPG 304 (459)
Q Consensus 277 ~~~~~~~~~~~~~Y~~~g~~gy~~fg~~ 304 (459)
+-+.+=..+..++|+.+|+.-+..+.++
T Consensus 23 ~fViik~vismimylilGi~L~yis~~~ 50 (54)
T PF04835_consen 23 WFVIIKSVISMIMYLILGIALIYISSND 50 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCc
Confidence 4455667788899999999876665544
Done!