Query 042581
Match_columns 459
No_of_seqs 192 out of 1858
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 12:59:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042581.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042581hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.9 2.4E-20 8.2E-25 186.5 28.9 349 55-416 5-380 (445)
2 3gia_A Uncharacterized protein 99.8 3.8E-17 1.3E-21 163.2 28.5 239 56-302 4-248 (444)
3 4djk_A Probable glutamate/gamm 99.7 3E-14 1E-18 144.8 33.5 241 54-304 7-263 (511)
4 2jln_A MHP1; hydantoin, transp 99.1 7.6E-08 2.6E-12 96.6 29.4 330 57-402 24-377 (501)
5 3dh4_A Sodium/glucose cotransp 98.5 0.00016 5.5E-09 73.0 30.8 153 57-222 19-174 (530)
6 2xq2_A Sodium/glucose cotransp 98.2 0.0025 8.5E-08 65.2 30.1 152 57-221 48-202 (593)
7 2a65_A Leutaa, Na(+):neurotran 96.4 0.93 3.2E-05 45.0 33.9 223 57-280 6-280 (519)
8 4ain_A Glycine betaine transpo 81.0 45 0.0015 32.9 18.1 152 54-212 90-270 (539)
9 3tx3_A Uncharacterized protein 55.4 1.1E+02 0.0037 26.8 10.8 30 267-297 22-51 (249)
10 3l1l_A Arginine/agmatine antip 29.1 3.6E+02 0.012 25.2 14.9 47 121-167 260-306 (445)
11 2wsw_A BCCT family betaine/car 26.5 4.6E+02 0.016 25.6 24.4 162 56-224 87-280 (509)
12 4b4a_A TATC, SEC-independent p 22.6 3.8E+02 0.013 23.3 11.7 97 316-414 58-177 (249)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.88 E-value=2.4e-20 Score=186.45 Aligned_cols=349 Identities=10% Similarity=0.078 Sum_probs=219.2
Q ss_pred CCCCCCchHHHHHHHHHhhhhhccchhHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchh
Q 042581 55 NSHAGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRK 134 (459)
Q Consensus 55 ~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~ 134 (459)
+++|+.+.++.++..+++++|+|++.+|...++.|..+++.+++.+++....+..+.|...+.|+.++..++.++.+||+
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~ 84 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPF 84 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHH
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCCh
Confidence 34688999999999999999999999998888888768888888999999999999999999999789999999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHH
Q 042581 135 GRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILM 214 (459)
Q Consensus 135 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 214 (459)
.+++..+.+++.......++....++++..+++....++ ....+.++.. +.......+..+....++.+....
T Consensus 85 ~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~-~~~~~in~~g~~~~~~~~~~~~~~ 157 (445)
T 3l1l_A 85 LGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPW------VLTITCVVVL-WIFVLLNIVGPKMITRVQAVATVL 157 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHH------HHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccH------HHHHHHHHHH-HHHHHHHHhchHHHHHHHHHHHHH
Confidence 999999999998888888888888888887765432111 1122222222 222222234555555555554444
Q ss_pred HHHHHHHhhhhhhcc-Cccc-CCCC---CcccCCchhhHHHHHhhhcccceeccchhhhccCCc-cchhHHHHHHHHHHH
Q 042581 215 SVLIFLSVAFTAIFG-GVKA-NHRI---PVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPS-KFTKVSIVSFTLVTA 288 (459)
Q Consensus 215 ~~~~~~~~~~~~~~~-~~~~-~~~~---~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~-~~~~~~~~~~~~~~~ 288 (459)
.+..++.++...... +.+. .+.. ...++.++..++...+|+|.|++.+....+|+|||+ +.+|++..+..++.+
T Consensus 158 ~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~ 237 (445)
T 3l1l_A 158 ALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAV 237 (445)
T ss_dssp HHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHH
Confidence 433333333322221 1111 1111 112355788899999999999999999999999997 599999999999999
Q ss_pred HHHHHHHHHHhhcCCCCh----hhHh---hcCCCchhHHHHHHHHHHHHhhhhccchhhhhHHHHHh-----hCCCCccc
Q 042581 289 LNTALGFMGTKLFGPGVN----SQIT---LSMPQHLVVTKIALWATVLTPMTKYALEFAPLAIQLEN-----HLPISLSA 356 (459)
Q Consensus 289 ~Y~~~g~~gy~~fg~~~~----~~il---~~~~~~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~-----~~~~~~~~ 356 (459)
+|++..+......+.+.. ++.. .... .++...+..+...+..+.+..-..+...+.+.. .+|+...+
T Consensus 238 ~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~ 316 (445)
T 3l1l_A 238 CYVLSTTAIMGMIPNAALRVSASPFGDAARMAL-GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFAR 316 (445)
T ss_dssp HHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH-CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGGGC
T ss_pred HHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHh
Confidence 999998887776664321 1111 1111 122333444445555555444444444333332 33322111
Q ss_pred --hhhHHHH-HHHHHHHHHHHHHHHHh--Cc----hHHHHHHHhhhHhHhHHHHhhhhHHHHHhcCCCc
Q 042581 357 --RSKMMIR-SSVGSLLLIIILTLALS--LP----YFQYVLSLTGSLVSICICLIFPCAFYIKISWPHI 416 (459)
Q Consensus 357 --~~~~~~~-~~~~~~~~~~~~~ia~~--~~----~~~~~~~~~Ga~~~~~~~~ilP~l~~l~~~~~~~ 416 (459)
+.+...+ .++...+ +.++... .| .++.+.++.+ ....+.|.++++.+++.++++.
T Consensus 317 ~~~~~~P~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 317 VNKAGTPVAGLIIVGIL---MTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_dssp CCTTCCCHHHHHHHHHH---HHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred cCCCCCCHHHHHHHHHH---HHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence 1111111 1111111 1222222 22 3556666544 3456788899999998887654
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.79 E-value=3.8e-17 Score=163.16 Aligned_cols=239 Identities=14% Similarity=0.155 Sum_probs=169.7
Q ss_pred CCCCCchHHHHHHHHHhhhhhccchhH-HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchh
Q 042581 56 SHAGSSFAHAVINMAGMLIGLGQLSTP-YAIENGGWASAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRK 134 (459)
Q Consensus 56 ~~~~~s~~~~~~~l~~~~iG~Gil~lP-~~~~~~G~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~ 134 (459)
++|+.+.++..+..+++++|+|++..| .+.+.+|...++.+++.+++.......+.|.+.++|+.++..+++++.+||+
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G~~ 83 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGDN 83 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHCSS
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhCcc
Confidence 578999999999999999999999987 4556667657788888999999999999999999999888999999999996
Q ss_pred --hHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHH
Q 042581 135 --GRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGI 212 (459)
Q Consensus 135 --~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 212 (459)
+++ ..+.+++........+....++++..+++..+.++ ......+...+++.....++.+....++.+..
T Consensus 84 ~~~g~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~ 155 (444)
T 3gia_A 84 IITGA-LSILLWMSYVISIALFAKGFAGYFLPLINAPINTF-------NIAITEIGIVAFFTALNFFGSKAVGRAEFFIV 155 (444)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHH-------HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchH-------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 343 45777777777888888899999988876532111 11111122222222222345555555555544
Q ss_pred HHHHHHHHHhhhhhhc-cCccc-CCCCCcccCCchhhHHHHHhhhcccceeccchhhhccCCcc-chhHHHHHHHHHHHH
Q 042581 213 LMSVLIFLSVAFTAIF-GGVKA-NHRIPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK-FTKVSIVSFTLVTAL 289 (459)
Q Consensus 213 ~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~-~~~~~~~~~~~~~~~ 289 (459)
...+..++.++...+. .+.+. .+.....++.++..++...+|+|.|++.+....+|+|||+| .+|++..+..++.++
T Consensus 156 ~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~~ 235 (444)
T 3gia_A 156 LVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFV 235 (444)
T ss_dssp HHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHHH
Confidence 4333333333222221 12211 11122234456778888999999999999999999999985 999999999999999
Q ss_pred HHHHHHHHHhhcC
Q 042581 290 NTALGFMGTKLFG 302 (459)
Q Consensus 290 Y~~~g~~gy~~fg 302 (459)
|++..+......+
T Consensus 236 y~~~~~~~~~~~~ 248 (444)
T 3gia_A 236 YVGVAISAIGNLP 248 (444)
T ss_dssp HHHHHHHHHTTSC
T ss_pred HHHHHHHHHhCCC
Confidence 9998887666554
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.70 E-value=3e-14 Score=144.75 Aligned_cols=241 Identities=13% Similarity=0.173 Sum_probs=153.8
Q ss_pred cCCCCCCchHHHHHHHHHhhhhhccchhHHHHhhhchHHHHHHHHHHHHH-HHHHHHHHHHhh--hCCCCCCHHHHHHHH
Q 042581 54 NNSHAGSSFAHAVINMAGMLIGLGQLSTPYAIENGGWASAFLLIGLGVIC-AYSAHLLGKCLD--KNPKSRSYIDIGQHA 130 (459)
Q Consensus 54 ~~~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~y~~~~~~~ 130 (459)
++.+|+.+.++.+...++.++| +.++|. .+..|...++..++.+++. ...+..+.|.+. +.| .++....+++.
T Consensus 7 ~~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~~~~~ 82 (511)
T 4djk_A 7 TGKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAWVSNT 82 (511)
T ss_dssp -----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHHHHHH
T ss_pred CccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhhHHhh
Confidence 3456889999999999999996 667775 4566655555544444443 447888999999 999 89999999999
Q ss_pred hchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhc--cCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHH
Q 042581 131 FGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVF--SGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLS 208 (459)
Q Consensus 131 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 208 (459)
+||+.+++..+..++.......++....++.+..++ +..+.+. -..+...+..++++.+.-.+..+....++
T Consensus 83 ~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------~~~~~~~~~~~~~~~~in~~g~~~~~~~~ 156 (511)
T 4djk_A 83 LGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDP------ITKTIAALIILWALALTQFGGTKYTARIA 156 (511)
T ss_dssp HCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCS------SHHHHHHHHHHHHHHHHHHTCSSSHHHHT
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCc------HHHHHHHHHHHHHHHHHHHhChHHHHHHH
Confidence 999999999999999888877778777777776553 2221110 01222222222222233345677776666
Q ss_pred HHHHHH-HHHHHHHhhhhh---hccCcc----cCCC--CCcccCCchhhHHHHHhhhcccceeccchhhhccCCcc-chh
Q 042581 209 VGGILM-SVLIFLSVAFTA---IFGGVK----ANHR--IPVLNLHKIPHISGLYIFSYAGHIVFPNLYKAMKDPSK-FTK 277 (459)
Q Consensus 209 ~~~~~~-~~~~~~~~~~~~---~~~~~~----~~~~--~~~~~~~~~~~~~~~~~fsf~~~~~i~~i~~e~k~p~~-~~~ 277 (459)
.+.... .+..++.++... ...+.+ .+.. .+..+..+...++...+|+|.|.+.+....+|+|||+| .+|
T Consensus 157 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ 236 (511)
T 4djk_A 157 KVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPL 236 (511)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhH
Confidence 654332 221111111111 111111 0101 11111124556788899999999999999999999985 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 042581 278 VSIVSFTLVTALNTALGFMGTKLFGPG 304 (459)
Q Consensus 278 ~~~~~~~~~~~~Y~~~g~~gy~~fg~~ 304 (459)
++..++.++.++|++..+......+++
T Consensus 237 ai~~~~~~~~~~y~~~~~~~~~~~~~~ 263 (511)
T 4djk_A 237 AMLLLMVAAICLSSVGGLSIAMVIPGN 263 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence 999999999999999988877766643
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.11 E-value=7.6e-08 Score=96.63 Aligned_cols=330 Identities=10% Similarity=-0.025 Sum_probs=189.3
Q ss_pred CCCCchHHHHHHHHHhhhhhccchhHHHHhh-hchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchh
Q 042581 57 HAGSSFAHAVINMAGMLIGLGQLSTPYAIEN-GGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRK 134 (459)
Q Consensus 57 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~-~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~ 134 (459)
+|+.++++-...-++..++.+-+.+...+.. .++. +++.+++..++....+.+......+++ .++.++.|..||++
T Consensus 24 ~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~G--l~~~v~~R~~FG~~ 101 (501)
T 2jln_A 24 ERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWG--INFTVAARMPFGIR 101 (501)
T ss_dssp GCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHC--CCHHHHTTTTSCTT
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcC--CChhhhhHhhcchh
Confidence 4567888888888888888777777755554 2245 666666666666555666666666766 47999999999999
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHHH
Q 042581 135 GRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGILM 214 (459)
Q Consensus 135 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 214 (459)
+..+..+...+..+|.........++.+...+..... . .+.....++..++.+++. ...++.++.++.+....
T Consensus 102 Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g-~-----~~~~v~~~i~~~l~~~~~-~~G~~~i~~~~~~~~p~ 174 (501)
T 2jln_A 102 GSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTG-F-----TNLPLWIVIFGAIQVVTT-FYGITFIRWMNVFASPV 174 (501)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C-----CCHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-c-----chHHHHHHHHHHHHHHHH-HhCHHHHHHHHHHHHHH
Confidence 9999999999999999888888888888776531100 0 012333445555555555 44677777777776554
Q ss_pred HHHHHHHhhhhhhcc-Cc--c-cCCCCCcccCCchhhHHHHH-hhhcccceeccchhhhccCCcc------------chh
Q 042581 215 SVLIFLSVAFTAIFG-GV--K-ANHRIPVLNLHKIPHISGLY-IFSYAGHIVFPNLYKAMKDPSK------------FTK 277 (459)
Q Consensus 215 ~~~~~~~~~~~~~~~-~~--~-~~~~~~~~~~~~~~~~~~~~-~fsf~~~~~i~~i~~e~k~p~~------------~~~ 277 (459)
....++.+.+..... +. + ..+..+..+...+..++..+ .+.-....+.++..+++|+|++ ...
T Consensus 175 ~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~~~~~~~~ 254 (501)
T 2jln_A 175 LLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQTKADARYAT 254 (501)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCccccccchhhccchHHH
Confidence 444444333332221 11 1 01111111222344444432 2222334668899999998887 334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCChhhHhhc-CCCchhHHHHHH-HHHHHHhhhhccc-hhhhhHHHHHhhCCCCc
Q 042581 278 VSIVSFTLVTALNTALGFMGTKLFGPGVNSQITLS-MPQHLVVTKIAL-WATVLTPMTKYAL-EFAPLAIQLENHLPISL 354 (459)
Q Consensus 278 ~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~il~~-~~~~~~~~~i~~-~~~~~~~~~s~p~-~~~~~~~~~~~~~~~~~ 354 (459)
...++..+...+...+|+..-...+...+..++.. +++......+.. +...+..+++-.. ..++....+.+..++..
T Consensus 255 g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~~~~~i 334 (501)
T 2jln_A 255 AQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPRVF 334 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHHSTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCcccc
Confidence 44556666666666666654434444444444444 332222233444 5555555555443 67888888888865431
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhC--chHHHHHHHhhhHhHhHHHHh
Q 042581 355 SARSKMMIRSSVGSLLLIIILTLALSL--PYFQYVLSLTGSLVSICICLI 402 (459)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~ia~~~--~~~~~~~~~~Ga~~~~~~~~i 402 (459)
+ + +.. ..+..++.++++... ..+..++++.|.+..+....+
T Consensus 335 ~-~--~~~----~~i~~vi~~~i~~~~~~~~f~~FL~~lg~~l~P~~gI~ 377 (501)
T 2jln_A 335 T-F--KTG----VIVSAVVGLLMMPWQFAGVLNTFLNLLASALGPLAGIM 377 (501)
T ss_dssp C-H--HHH----HHHHHHHHHHTCGGGTHHHHHHHHHHHHHTTHHHHHHH
T ss_pred c-h--hHH----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 111 112222223333221 346667777666666555433
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.53 E-value=0.00016 Score=72.96 Aligned_cols=153 Identities=14% Similarity=0.045 Sum_probs=90.9
Q ss_pred CCCCchHHHHHHHHHhhhhhc-cchhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchh
Q 042581 57 HAGSSFAHAVINMAGMLIGLG-QLSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRK 134 (459)
Q Consensus 57 ~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~ 134 (459)
.|+.+++...+.+..+.+++. ++++|-.....|+. ....+.. ++.....+..+....++.+ ..+..|+-++-||++
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~~~~-~~T~~e~l~~Rfg~~ 96 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIEKG-IYTIPEFVEKRFNKK 96 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHHHTT-CCSHHHHHHHHTCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHHcC-CccHHHHHHHHcCcH
Confidence 578899999999999999886 58899777777865 2211111 1111122333344445554 489999999999998
Q ss_pred hHhHHHHHHHH-HHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHH
Q 042581 135 GRAAAATFIYL-EIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGIL 213 (459)
Q Consensus 135 ~~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 213 (459)
.+.+..+...+ +.+..+.+-+...+..++.+++- +...-.++..+++...+....++...+...+..+
T Consensus 97 ~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~Gi-----------~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~~ 165 (530)
T 3dh4_A 97 LKTILAVFWISLYIFVNLTSVLYLGGLALETILGI-----------PLMYSILGLALFALVYSIYGGLSAVVWTDVIQVF 165 (530)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHHHTTC------CCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 88877765443 22222333334445555555431 1334456666777777888899999888888866
Q ss_pred HHHHHHHHh
Q 042581 214 MSVLIFLSV 222 (459)
Q Consensus 214 ~~~~~~~~~ 222 (459)
.++...+++
T Consensus 166 im~~g~~~v 174 (530)
T 3dh4_A 166 FLVLGGFMT 174 (530)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555443333
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.17 E-value=0.0025 Score=65.19 Aligned_cols=152 Identities=14% Similarity=0.046 Sum_probs=87.3
Q ss_pred CCCCchHHHHHHHHHhhhhhc-cchhHHHHhhhchH-HHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHHhchh
Q 042581 57 HAGSSFAHAVINMAGMLIGLG-QLSTPYAIENGGWA-SAFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHAFGRK 134 (459)
Q Consensus 57 ~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~-g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~~G~~ 134 (459)
.|+.+++...+.+..+.+++. .++.|....+.|+. ....+.. ++........+..-.+|.+ ..+..|+-++=||++
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~-~~~~~~~~~~~~p~~~r~~-~~T~~e~l~~Rfg~~ 125 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIEKG-IYTIPEFVEKRFNKK 125 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHHH-HHHHHHHHHTHHHHHHHTT-CCSHHHHHHHHTCHH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHHhCC-CCCcHHHHHHHccCc
Confidence 467889999999988888876 47899776677764 2221111 1111112233334345554 489999999999998
Q ss_pred hHhHHHHHHHH-HHHHHHHHHHHHHHhhhhhhccCCccCccccccchhhHHHHHHHHHHHhhcccCCCCChhHHHHHHHH
Q 042581 135 GRAAAATFIYL-EIFMALVSYTILLHDNLITVFSGTSLDLSWAKLSTSQMLTVIAVLIALPSLWLRDLSSISFLSVGGIL 213 (459)
Q Consensus 135 ~~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 213 (459)
.+.+..+...+ ..+.....-+...+..++.+++. +...-.++..+++...+....++...+...+..+
T Consensus 126 ~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi-----------~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~i 194 (593)
T 2xq2_A 126 LKTILAVFWISLYIFVNLTSVLYLGGLALETILGI-----------PLMYSILGLALFALVYSIYGGLSAVVWTDVIQVF 194 (593)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----------cHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 88777655443 22223333344455556665432 1233345566666777778889988888888765
Q ss_pred HHHHHHHH
Q 042581 214 MSVLIFLS 221 (459)
Q Consensus 214 ~~~~~~~~ 221 (459)
..+...+.
T Consensus 195 iml~~~l~ 202 (593)
T 2xq2_A 195 FLVLGGFM 202 (593)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544333
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=96.36 E-value=0.93 Score=44.98 Aligned_cols=223 Identities=9% Similarity=0.053 Sum_probs=106.3
Q ss_pred CCCCchHHHHHHHHHhhhhhc-cchhHHHHhhhchH-H----HHHHHHHHHHHHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 042581 57 HAGSSFAHAVINMAGMLIGLG-QLSTPYAIENGGWA-S----AFLLIGLGVICAYSAHLLGKCLDKNPKSRSYIDIGQHA 130 (459)
Q Consensus 57 ~~~~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~-g----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~~~~~~ 130 (459)
++-.|..+-++..+++.+|-| +.=.||...+-|-. - +++++++|+=..+.=..+.|...+..+ ++-.+.-++.
T Consensus 6 ~~W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r-~~~i~a~~~l 84 (519)
T 2a65_A 6 EHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGH-GTTPAIFYLL 84 (519)
T ss_dssp CCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTC-CSHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccC-CCHHHHHHHh
Confidence 455677888999999999999 78899886666632 2 333333444444444444443322222 3333333333
Q ss_pred hchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccCcc--c----------------c-c-c---------chh
Q 042581 131 FGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFSGTSLDLS--W----------------A-K-L---------STS 181 (459)
Q Consensus 131 ~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~--~----------------~-~-~---------~~~ 181 (459)
..++....+++...+..+..+.-|.++.+-.+..++.....+.+ | + . . ..-
T Consensus 85 ~~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~~~~~g~~ 164 (519)
T 2a65_A 85 WRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKP 164 (519)
T ss_dssp SCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCC
T ss_pred cCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCCcccccCc
Confidence 22211122333333344444444555544433333211111100 0 0 0 0 000
Q ss_pred hHH---HHHHHHHHHhhcccCCC-CChhHHHHHHHHHHHHHHHHhhhhhhccCc----cc-------CCCC-CcccCCch
Q 042581 182 QML---TVIAVLIALPSLWLRDL-SSISFLSVGGILMSVLIFLSVAFTAIFGGV----KA-------NHRI-PVLNLHKI 245 (459)
Q Consensus 182 ~~~---~~i~~~~~~pl~~~~~l-~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~----~~-------~~~~-~~~~~~~~ 245 (459)
++- ..+.+.++.-++..|.+ +....++.+-.....+.+++++++...-+. .. .++. ...+.+-+
T Consensus 165 ~~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw 244 (519)
T 2a65_A 165 SLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVW 244 (519)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHH
Confidence 111 12223333334567787 567777766655555555555555443221 00 0110 11122235
Q ss_pred hhHHHHHhhhccccee-ccchhhhccCCccchhHHH
Q 042581 246 PHISGLYIFSYAGHIV-FPNLYKAMKDPSKFTKVSI 280 (459)
Q Consensus 246 ~~~~~~~~fsf~~~~~-i~~i~~e~k~p~~~~~~~~ 280 (459)
..+.+=.+||+..-.. +....+.+|+.++..|...
T Consensus 245 ~~A~gQ~FFSLslG~G~~ity~SY~~~~~n~~~~a~ 280 (519)
T 2a65_A 245 IAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGL 280 (519)
T ss_dssp HHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHH
T ss_pred HHHHHHHHHHhHHHHhHHhhhhcccCCCcChHhhHH
Confidence 6788888999876555 4444555666667665433
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=81.01 E-value=45 Score=32.89 Aligned_cols=152 Identities=13% Similarity=0.029 Sum_probs=71.9
Q ss_pred cCCCCCCchHHHHHHHHHhhhhhccch----hHHHHhh---hc-----hH-HHHHHHHHHHHHHHHHHHHHHH-----hh
Q 042581 54 NNSHAGSSFAHAVINMAGMLIGLGQLS----TPYAIEN---GG-----WA-SAFLLIGLGVICAYSAHLLGKC-----LD 115 (459)
Q Consensus 54 ~~~~~~~s~~~~~~~l~~~~iG~Gil~----lP~~~~~---~G-----~~-g~~~~~~~~~~~~~~~~~l~~~-----~~ 115 (459)
++.++.-|.++-+..+..+-+|.|++. =|..-.. .| -- +....++=+-+..++.+.+.-. ..
T Consensus 90 ~d~kPefS~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~WAiYav~glalaY~~y 169 (539)
T 4ain_A 90 IDEAPEFRTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTF 169 (539)
T ss_dssp TTCCCSSCHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCcchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHh
Confidence 345677888999999999999999873 3322111 01 11 2222233222333333333222 12
Q ss_pred hCCCCCC-----HHHHHHH-HhchhhHhHHHHH-HHHHHHHHHHHHHHHHHhh---hhhhccCCccCccccccchhhHHH
Q 042581 116 KNPKSRS-----YIDIGQH-AFGRKGRAAAATF-IYLEIFMALVSYTILLHDN---LITVFSGTSLDLSWAKLSTSQMLT 185 (459)
Q Consensus 116 ~~~~~~~-----y~~~~~~-~~G~~~~~~~~~~-~~~~~~g~~~~y~i~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~ 185 (459)
|++...+ |.=++++ ..|+.|+ ++|++ ++...+|...+.-....+. ++.+++..+... ..+..+
T Consensus 170 rk~~pl~iss~l~PllG~r~~~G~~G~-~IDilav~atv~GvatSLGlg~~Qi~~Gl~~lfGi~~~~~------~~qi~i 242 (539)
T 4ain_A 170 RVGRKQLLSSAFVPLIGEKGAEGWLGK-LIDILAIIATVFGTACSLGLGALQIGAGLSAANIIEDPSD------WTIVGI 242 (539)
T ss_dssp CTCCCSCTTGGGHHHHHHHHTTSHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCST------TTTTHH
T ss_pred cCCCCCcHHHHhHhhcCCCccCCcchh-hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCCCCh------HHHHHH
Confidence 2222233 3344555 5555554 55554 4445556555554433333 334433220111 234445
Q ss_pred HHHHHHHHhhcccCCC-CChhHHHHHHH
Q 042581 186 VIAVLIALPSLWLRDL-SSISFLSVGGI 212 (459)
Q Consensus 186 ~i~~~~~~pl~~~~~l-~~l~~~s~~~~ 212 (459)
++...++..++....+ |.++++|-+.+
T Consensus 243 i~vit~i~~~Sa~sGl~kGIk~LS~~N~ 270 (539)
T 4ain_A 243 VSVLTLAFIFSAISGVGKGIQYLSNANM 270 (539)
T ss_dssp HHHHHHHHHHHHHC---CCHHHHGGGHC
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5555555556666666 56666665553
No 9
>3tx3_A Uncharacterized protein involved in cysteine BIOS; structural genomics, PSI-biology, NEW YORK consortium on MEM protein structure, nycomps; HET: LDA; 2.30A {Idiomarina loihiensis}
Probab=55.41 E-value=1.1e+02 Score=26.85 Aligned_cols=30 Identities=7% Similarity=-0.063 Sum_probs=19.8
Q ss_pred hhccCCccchhHHHHHHHHHHHHHHHHHHHH
Q 042581 267 KAMKDPSKFTKVSIVSFTLVTALNTALGFMG 297 (459)
Q Consensus 267 ~e~k~p~~~~~~~~~~~~~~~~~Y~~~g~~g 297 (459)
+.+.+| ++++.+.....+..++|.......
T Consensus 22 ~~i~~p-~lr~~vl~Pllinl~L~~~~~~~~ 51 (249)
T 3tx3_A 22 ELIRTK-GLRRYVVVPILTNLILFSLAFTWL 51 (249)
T ss_dssp HHHTST-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCc-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556 677778888877777776554443
No 10
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=29.10 E-value=3.6e+02 Score=25.20 Aligned_cols=47 Identities=15% Similarity=0.129 Sum_probs=40.2
Q ss_pred CCHHHHHHHHhchhhHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Q 042581 121 RSYIDIGQHAFGRKGRAAAATFIYLEIFMALVSYTILLHDNLITVFS 167 (459)
Q Consensus 121 ~~y~~~~~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~~~~ 167 (459)
..+.+..+..+|+++..++.+...+..++...++....+..+..+-.
T Consensus 260 ~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~ 306 (445)
T 3l1l_A 260 SPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAAD 306 (445)
T ss_dssp CTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56889999999999999999998888888888888888887777643
No 11
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=26.46 E-value=4.6e+02 Score=25.57 Aligned_cols=162 Identities=13% Similarity=0.003 Sum_probs=78.5
Q ss_pred CCCCCchHHHHHHHHHhhhhhccch----hHHH-Hhh------hchH-----HHHHHHHHHHHHHHHHHHH-----HHHh
Q 042581 56 SHAGSSFAHAVINMAGMLIGLGQLS----TPYA-IEN------GGWA-----SAFLLIGLGVICAYSAHLL-----GKCL 114 (459)
Q Consensus 56 ~~~~~s~~~~~~~l~~~~iG~Gil~----lP~~-~~~------~G~~-----g~~~~~~~~~~~~~~~~~l-----~~~~ 114 (459)
.+++-|.++-+..+..+-+|.|++. =|.. +.. .+-. +.....+=+-+..++.+.+ .-..
T Consensus 87 ~kPefs~~sW~aMlF~aGmGiGl~fwgvaEP~~h~~~pP~~~~~~s~eAa~~Am~~tffHWG~~~WaiYal~~lalayf~ 166 (509)
T 2wsw_A 87 EKPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISSPPFGMEGYSAPAKEIGLAYSLFHWGPLPWATYSFLSVAFAYFF 166 (509)
T ss_dssp SCCSSCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCSTTCCTTCHHHHHHHHHHHHHHTSHHHHHTTHHHHHHHHHHH
T ss_pred CCCCCccchHHHHHHHHhhhhHHhhhhhhhhHHHccCCCCCCCCCcHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHH
Confidence 5667888899999999999999865 3422 211 1111 1111122111122222222 1212
Q ss_pred h-hCCCCCC-----HHHHH-HHHhchhhHhHHHHHHHHHHHHHHHHHHHHHHh---hhhhhccCCccCccccccchhhHH
Q 042581 115 D-KNPKSRS-----YIDIG-QHAFGRKGRAAAATFIYLEIFMALVSYTILLHD---NLITVFSGTSLDLSWAKLSTSQML 184 (459)
Q Consensus 115 ~-~~~~~~~-----y~~~~-~~~~G~~~~~~~~~~~~~~~~g~~~~y~i~~~~---~l~~~~~~~~~~~~~~~~~~~~~~ 184 (459)
. |.+...+ |.=++ ++..|+.|+.+=.+.++...+|...+.-....+ -++.+++..+ .. ..+..
T Consensus 167 y~r~~~pl~iss~l~PllG~~r~~G~~G~~IDilav~at~~G~atsLGlg~~qi~~Gl~~lfGi~~-~~------~~qi~ 239 (509)
T 2wsw_A 167 FVRKMEVIRPSSTLVPLVGEKHVNGLFGTVVDNFYLVALILAMGTSLGLATPLVTECIQYLFGIPH-TL------QLDAI 239 (509)
T ss_dssp HTSCCCCCSGGGGCHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CH------HHHHH
T ss_pred HHcCCCCcchHHHhHhhcCCcccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-cc------HHHHH
Confidence 2 3222223 44455 566666666443344555566655554333322 2334433211 11 23444
Q ss_pred HHHHHHHHHhhcccCCC-CChhHHHHHHHHHHHHHHHHhhh
Q 042581 185 TVIAVLIALPSLWLRDL-SSISFLSVGGILMSVLIFLSVAF 224 (459)
Q Consensus 185 ~~i~~~~~~pl~~~~~l-~~l~~~s~~~~~~~~~~~~~~~~ 224 (459)
+++...++..++....+ |.++++|-+.+...+..++.++.
T Consensus 240 ii~vit~~~~~Sa~sGl~kGIk~LS~~N~~la~~Ll~fvli 280 (509)
T 2wsw_A 240 IISCWILLNAICVAFGLQKGVKIASDVRTYLSFLMLGWVFI 280 (509)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555566666777 66777777665544444443333
No 12
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=22.58 E-value=3.8e+02 Score=23.26 Aligned_cols=97 Identities=12% Similarity=0.039 Sum_probs=52.4
Q ss_pred chhHHHHHHHHHHHHhhhhccchhhhhHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHHHHHh---------------
Q 042581 316 HLVVTKIALWATVLTPMTKYALEFAPLAIQLENHLPISLSARSKMMIRSSVGSLLLIIILTLALS--------------- 380 (459)
Q Consensus 316 ~~~~~~i~~~~~~~~~~~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~--------------- 380 (459)
.+....-.++......+.+.|...+=.-.-+..-+.+++.+...... .....+.......+..
T Consensus 58 ~e~f~~~lkvs~~~g~~~a~P~ilyQiw~Fi~PgLy~~Err~~~~~~--~~s~~LF~~G~~f~Yf~v~P~~~~Fl~~~~~ 135 (249)
T 4b4a_A 58 TEPLFILIKISLAVGFIIASPVILYQFWRFIEPALYSHEKRAFIPLL--LGSILLFMLGALFAYFIVLPLALKFLLGLGF 135 (249)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCCTTTTHHHH--HHHHHHHHHHHHHHHHTHHHHHHHTTTCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 45565667888888889999987665544444444444433222221 1111111122222221
Q ss_pred -----Cc--hHHHHHHHhhhHh-HhHHHHhhhhHHHHHhcCC
Q 042581 381 -----LP--YFQYVLSLTGSLV-SICICLIFPCAFYIKISWP 414 (459)
Q Consensus 381 -----~~--~~~~~~~~~Ga~~-~~~~~~ilP~l~~l~~~~~ 414 (459)
.+ ++++.++++-.+. ...++|-+|.++.+..+-+
T Consensus 136 ~~i~~~~~~~i~~Yl~fv~~l~l~fGl~FelPvi~~~L~~~G 177 (249)
T 4b4a_A 136 TQLLATPYLSVDMYISFVLKLVVAFGIAFEMPIVLYVLQKAG 177 (249)
T ss_dssp TTSSSSTTEEHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHTT
T ss_pred hhhHhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 13 5555556554333 3346778999999887755
Done!