BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042582
(189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A3L|L Chain L, Catalysis Of A Disfavored Reaction: An Antibody Exo Diels-
Alderase-Tsa-Inhibitor Complex At 1.95 A Resolution
pdb|1RUQ|L Chain L, Crystal Structure (H) Of U.V.-Irradiated Diels-Alder
Antibody 13g5 Fab At Ph 8.0 With A Data Set Collected In
House.
pdb|1RUR|L Chain L, Crystal Structure (i) Of Native Diels-alder Antibody 13g5
Fab At Ph 8.0 With A Data Set Collected At Ssrl Beamline
9- 1
Length = 217
Score = 30.0 bits (66), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 10/80 (12%)
Query: 34 SLTTRVSKTLCIIFLSLLLVAGIILFVLYLSLRPHRPRIFIHEFSIPALAQPNGFENAEI 93
S++ R SK SLL GII YL P++ I++ S A P+ F +
Sbjct: 20 SISCRSSK-------SLLNSNGIIHMYWYLQKPGQSPQLLIYQMSKLASGAPDRFSGSGS 72
Query: 94 IFNVTARNSN---QHVGIYF 110
+ T R S + VG+Y+
Sbjct: 73 GTDFTLRISRVEAEDVGVYY 92
>pdb|1UB5|L Chain L, Crystal Structure Of Antibody 19g2 With Hapten At 100k
pdb|1UB5|B Chain B, Crystal Structure Of Antibody 19g2 With Hapten At 100k
Length = 214
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 44 CIIFLSLLLVAGIILFVLYLSLRPHRPRIFIHEFSIPALAQPNGFENAEIIFNVTARNSN 103
C SLL GI YL P++ I++ S A PN F ++ + T R S
Sbjct: 23 CRSTKSLLHSNGITYLYWYLQKPGQSPQLLIYQMSNLASGVPNRFSSSGSGTDFTLRISR 82
Query: 104 ---QHVGIYF 110
+ VG+Y+
Sbjct: 83 VEAEDVGVYY 92
>pdb|3UA4|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5
pdb|3UA4|B Chain B, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5
Length = 745
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 8/106 (7%)
Query: 57 ILFVLYLSLRPHRPRIFIHEF---SIPALAQPNGFENAEIIFN--VTARNSNQHVGIYFD 111
I+ + Y+++R + R+ I E S+P +A+ GFE +II + + + N+ D
Sbjct: 459 IVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLD 518
Query: 112 SVEGSVYYKNQQVGATPLADTFFQEPKTTTILHATLSGATLTVNSR 157
V G + K + + P T + +P +T +H T+ ++ SR
Sbjct: 519 GVTG--FLKPTTI-SIPQKYTSYVKPIMSTHIHQTIKAQSIPYLSR 561
>pdb|3UA3|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5 In Complex With Sah
pdb|3UA3|B Chain B, Crystal Structure Of Protein Arginine Methyltransferase
Prmt5 In Complex With Sah
Length = 745
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 8/106 (7%)
Query: 57 ILFVLYLSLRPHRPRIFIHEF---SIPALAQPNGFENAEIIFN--VTARNSNQHVGIYFD 111
I+ + Y ++R + R+ I E S+P +A+ GFE +II + + + N+ D
Sbjct: 459 IVTLKYXNVRTWKRRVTIIESDXRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLD 518
Query: 112 SVEGSVYYKNQQVGATPLADTFFQEPKTTTILHATLSGATLTVNSR 157
V G + K + + P T + +P +T +H T+ ++ SR
Sbjct: 519 GVTG--FLKPTTI-SIPQKYTSYVKPIXSTHIHQTIKAQSIPYLSR 561
>pdb|1NR1|A Chain A, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|B Chain B, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|C Chain C, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|D Chain D, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|E Chain E, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|F Chain F, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
Length = 496
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 127 TPLADTFFQEPKTTTILHATLSGATLTVNSRRWMEFMHDRGQGKVGFRLEIKSTIRFQVS 186
TP AD F E I L+ +TV+ W++ ++ G++ F+ E S +S
Sbjct: 348 TPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMS 407
>pdb|1NQT|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|G Chain G, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|H Chain H, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|I Chain I, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|J Chain J, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|K Chain K, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|L Chain L, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NR7|A Chain A, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|B Chain B, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|C Chain C, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|D Chain D, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|E Chain E, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|F Chain F, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|G Chain G, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|H Chain H, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|I Chain I, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|J Chain J, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|K Chain K, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|L Chain L, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
Length = 496
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 127 TPLADTFFQEPKTTTILHATLSGATLTVNSRRWMEFMHDRGQGKVGFRLEIKSTIRFQVS 186
TP AD F E I L+ +TV+ W++ ++ G++ F+ E S +S
Sbjct: 348 TPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMS 407
>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|B Chain B, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|C Chain C, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|D Chain D, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|E Chain E, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|F Chain F, Structure Of Human Glutamate Dehydrogenase-Apo Form
Length = 505
Score = 26.6 bits (57), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 127 TPLADTFFQEPKTTTILHATLSGATLTVNSRRWMEFMHDRGQGKVGFRLEIKSTIRFQVS 186
TP AD F E I L+ +TV+ W++ ++ G++ F+ E S +S
Sbjct: 357 TPEADKIFLERNIMVIPDLYLNAGGVTVSYFEWLKNLNHVSYGRLTFKYERDSNYHLLMS 416
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,146,043
Number of Sequences: 62578
Number of extensions: 193452
Number of successful extensions: 518
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 513
Number of HSP's gapped (non-prelim): 9
length of query: 189
length of database: 14,973,337
effective HSP length: 93
effective length of query: 96
effective length of database: 9,153,583
effective search space: 878743968
effective search space used: 878743968
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)