BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042582
         (189 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O48915|NDR1_ARATH Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1
          Length = 219

 Score = 63.9 bits (154), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 15/161 (9%)

Query: 37  TRVSKTLCIIFLSLLLVAGIILFVLYLSLRPHRPRIFIHEFSIPALAQ-PNGFENAEIIF 95
           T   +  C   LS +  AG+    L+LSLR  +P+  I  F IPAL + PN  +N  + F
Sbjct: 8   TEGGRNCCTCCLSFIFTAGLTSLFLWLSLRADKPKCSIQNFFIPALGKDPNSRDNTTLNF 67

Query: 96  NVTARNSNQHVGIYFDSVEGSVYYKN-QQVGATPL-------ADTFFQEPKTTTILHATL 147
            V   N N+  GIY+D V  +    N  ++ ++ L          F+Q  K      A  
Sbjct: 68  MVRCDNPNKDKGIYYDDVHLNFSTINTTKINSSALVLVGNYTVPKFYQGHKK----KAKK 123

Query: 148 SGATLTVNSRRWMEFMHDRGQGKVGFRLEIKSTIRFQVSTW 188
            G    +N++  +  +   G     FRL++K+ +RF++  W
Sbjct: 124 WGQVKPLNNQTVLRAVLPNGSAV--FRLDLKTQVRFKIVFW 162


>sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1
          Length = 416

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 8/94 (8%)

Query: 95  FNVTARNSNQHVGIYFDSVEGSVYYKNQQVGATPLADTFFQEPKTTTILHATLSGATLTV 154
            N++ RNS   +GI++D  E +VYY NQ++GA P+   F+   K T +L A   G TL +
Sbjct: 33  LNLSIRNSKSSIGIHYDRFEATVYYMNQRLGAVPMP-LFYLGSKNTMLLRALFEGQTLVL 91

Query: 155 ---NSRRWMEFMHDRGQGKVGFRLEIKSTIRFQV 185
              N R+  +F  D+  G   +R+++K +I F+V
Sbjct: 92  LKGNERK--KFEDDQKTGV--YRIDVKLSINFRV 121


>sp|Q8VZ13|Y1816_ARATH Uncharacterized protein At1g08160 OS=Arabidopsis thaliana
           GN=At1g08160 PE=2 SV=1
          Length = 221

 Score = 41.6 bits (96), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 5/131 (3%)

Query: 60  VLYLSLRPHRPRIFIHEFSIPALAQPNGFE--NAEIIFNVTARNSNQHVGIYFDSVEGSV 117
           + YL+LRP R    +   S+   A  N  +  NA+  + + + N  +HV + + S+  S 
Sbjct: 57  ITYLTLRPKRLIYTVEAASVQEFAIGNNDDHINAKFSYVIKSYNPEKHVSVRYHSMRIST 116

Query: 118 YYKNQQVGATPLADTFFQEPKTTTILHATLSGATLTVNSRRWMEFMHDRGQGKVGFRLEI 177
            + NQ V    ++  F Q PK  T +   L    + ++     +   ++ +G +   +E+
Sbjct: 117 AHHNQSVAHKNISP-FKQRPKNETRIETQLVSHNVALSKFNARDLRAEKSKGTI--EMEV 173

Query: 178 KSTIRFQVSTW 188
             T R    TW
Sbjct: 174 YITARVSYKTW 184


>sp|Q7Z407|CSMD3_HUMAN CUB and sushi domain-containing protein 3 OS=Homo sapiens GN=CSMD3
           PE=2 SV=3
          Length = 3707

 Score = 33.1 bits (74), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 6/91 (6%)

Query: 90  NAEIIFNVTARNSNQHVGIYFDSVEGSVYYKNQQVGATPLADTFFQEPKTT--TILHATL 147
           NA+ ++ +TA N+N+ + I F+  +  + Y    +G          +P+T    +  + +
Sbjct: 571 NAQCVWVITAVNTNKVIQINFEEFDLEIGYDTLTIG----DGGEVGDPRTVLQVLTGSFV 626

Query: 148 SGATLTVNSRRWMEFMHDRGQGKVGFRLEIK 178
               ++++S+ W+    D   G VGF++  K
Sbjct: 627 PDLIVSMSSQMWLHLQTDESVGSVGFKVNYK 657


>sp|Q80T79|CSMD3_MOUSE CUB and sushi domain-containing protein 3 OS=Mus musculus GN=Csmd3
           PE=2 SV=3
          Length = 3707

 Score = 32.7 bits (73), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 90  NAEIIFNVTARNSNQHVGIYFDSVEGSVYYKNQQVGATPLADTFFQEPKTT--TILHATL 147
           NA+ ++ +TA N+N+ + I F+  +  + Y    +G          +P+T    +  + +
Sbjct: 571 NAQCVWVITAVNTNKVIQINFEEFDLEIGYDTLTIG----DGGEVGDPRTVLQVLTGSFV 626

Query: 148 SGATLTVNSRRWMEFMHDRGQGKVGFRLEIK 178
               +++ S+ W+    D   G VGF++  K
Sbjct: 627 PDLIVSMRSQMWLHLQTDESVGSVGFKVNYK 657


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.136    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,828,940
Number of Sequences: 539616
Number of extensions: 2475912
Number of successful extensions: 6945
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6936
Number of HSP's gapped (non-prelim): 9
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.9 bits)