Query 042582
Match_columns 189
No_of_seqs 122 out of 802
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 07:35:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042582.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042582hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 1E-30 2.2E-35 211.3 21.9 151 31-188 31-186 (219)
2 PF03168 LEA_2: Late embryogen 99.3 5.6E-12 1.2E-16 89.0 8.1 83 96-185 1-84 (101)
3 smart00769 WHy Water Stress an 98.6 1E-06 2.2E-11 62.7 10.4 84 87-177 11-96 (100)
4 PF07092 DUF1356: Protein of u 98.0 0.0003 6.6E-09 57.4 13.6 83 65-149 96-181 (238)
5 PF12751 Vac7: Vacuolar segreg 97.8 0.00015 3.2E-09 62.8 8.9 89 31-127 294-383 (387)
6 COG5608 LEA14-like dessication 97.7 0.0016 3.5E-08 49.5 12.3 79 68-151 31-109 (161)
7 PLN03160 uncharacterized prote 89.8 2.5 5.4E-05 34.2 8.2 104 28-142 31-147 (219)
8 PF06072 Herpes_US9: Alphaherp 85.3 0.23 5E-06 31.8 -0.3 8 55-62 51-58 (60)
9 TIGR02588 conserved hypothetic 76.9 6.4 0.00014 29.0 4.8 51 49-105 11-63 (122)
10 PF05473 Herpes_UL45: UL45 pro 75.9 5.8 0.00013 31.7 4.7 11 40-50 50-60 (200)
11 COG4698 Uncharacterized protei 75.0 2.6 5.7E-05 33.1 2.4 38 40-79 11-48 (197)
12 PF05399 EVI2A: Ectropic viral 70.7 11 0.00023 30.5 5.0 23 39-61 128-150 (227)
13 PRK05529 cell division protein 69.7 11 0.00024 31.1 5.2 43 69-112 58-128 (255)
14 PF11906 DUF3426: Protein of u 69.5 19 0.00041 26.8 6.1 74 73-147 49-134 (149)
15 PF09624 DUF2393: Protein of u 66.2 52 0.0011 24.5 8.0 62 57-126 33-96 (149)
16 PRK07021 fliL flagellar basal 63.7 22 0.00048 27.2 5.5 16 108-123 78-93 (162)
17 PRK10893 lipopolysaccharide ex 61.9 62 0.0013 25.6 7.9 19 66-84 37-55 (192)
18 PF14155 DUF4307: Domain of un 58.8 16 0.00035 26.3 3.8 12 117-128 70-81 (112)
19 PF08999 SP_C-Propep: Surfacta 57.5 14 0.0003 25.3 2.9 32 29-60 22-53 (93)
20 PF09865 DUF2092: Predicted pe 57.2 1E+02 0.0022 24.9 8.5 40 85-125 33-74 (214)
21 COG1580 FliL Flagellar basal b 56.1 44 0.00095 25.8 5.9 26 40-65 17-42 (159)
22 PF11322 DUF3124: Protein of u 56.1 81 0.0018 23.4 7.2 56 86-145 18-75 (125)
23 PF12505 DUF3712: Protein of u 54.2 28 0.00061 25.2 4.5 27 89-116 98-124 (125)
24 PF15012 DUF4519: Domain of un 50.9 19 0.00041 22.8 2.6 20 49-68 37-56 (56)
25 KOG3950 Gamma/delta sarcoglyca 49.9 34 0.00073 28.4 4.6 22 88-109 105-126 (292)
26 PRK08455 fliL flagellar basal 47.0 25 0.00055 27.6 3.4 15 109-123 103-117 (182)
27 PF05170 AsmA: AsmA family; I 46.7 96 0.0021 28.5 7.7 95 70-180 440-534 (604)
28 PF04573 SPC22: Signal peptida 46.3 1E+02 0.0022 24.1 6.6 41 39-81 8-50 (175)
29 PF09911 DUF2140: Uncharacteri 45.3 39 0.00083 26.7 4.2 23 48-70 9-31 (187)
30 PHA02844 putative transmembran 44.9 20 0.00044 24.0 2.1 22 42-63 48-69 (75)
31 PF07787 DUF1625: Protein of u 44.7 24 0.00053 28.9 3.1 16 52-67 233-248 (248)
32 PRK06531 yajC preprotein trans 44.4 9.4 0.0002 27.8 0.5 11 60-70 15-25 (113)
33 PF10907 DUF2749: Protein of u 42.8 35 0.00076 22.3 2.9 16 53-68 13-28 (66)
34 PF06637 PV-1: PV-1 protein (P 41.7 36 0.00079 30.0 3.7 16 47-62 34-49 (442)
35 PRK12785 fliL flagellar basal 41.4 83 0.0018 24.2 5.5 16 108-123 86-101 (166)
36 PF01102 Glycophorin_A: Glycop 39.9 9.5 0.00021 28.1 -0.0 28 49-76 73-101 (122)
37 PF11770 GAPT: GRB2-binding ad 39.6 41 0.00088 25.8 3.3 23 45-67 14-36 (158)
38 PF05478 Prominin: Prominin; 39.6 31 0.00066 33.4 3.3 25 34-59 136-160 (806)
39 COG1589 FtsQ Cell division sep 39.2 43 0.00093 27.7 3.8 32 50-81 38-69 (269)
40 PF00927 Transglut_C: Transglu 38.7 1.3E+02 0.0028 20.8 5.8 60 88-147 12-74 (107)
41 PF04478 Mid2: Mid2 like cell 37.7 29 0.00062 26.7 2.3 22 51-72 61-82 (154)
42 PF08113 CoxIIa: Cytochrome c 37.4 15 0.00032 20.7 0.5 14 50-63 11-24 (34)
43 COG5353 Uncharacterized protei 37.3 13 0.00029 28.4 0.4 30 39-68 5-34 (161)
44 PRK13183 psbN photosystem II r 37.0 54 0.0012 19.9 2.9 23 45-67 10-32 (46)
45 KOG2621 Prohibitins and stomat 35.0 2.8E+02 0.0061 23.5 8.9 34 71-104 91-132 (288)
46 PF05473 Herpes_UL45: UL45 pro 34.9 87 0.0019 25.0 4.8 16 38-53 52-67 (200)
47 PRK05696 fliL flagellar basal 34.9 69 0.0015 24.7 4.1 26 95-123 76-101 (170)
48 PF15145 DUF4577: Domain of un 34.6 37 0.00081 24.7 2.3 26 42-67 63-88 (128)
49 PF06092 DUF943: Enterobacteri 34.5 26 0.00055 27.0 1.6 17 51-67 12-28 (157)
50 PF06024 DUF912: Nucleopolyhed 34.1 68 0.0015 22.6 3.6 21 46-66 67-88 (101)
51 CHL00020 psbN photosystem II p 32.6 62 0.0014 19.3 2.7 23 45-67 7-29 (43)
52 PF09307 MHC2-interact: CLIP, 32.3 15 0.00032 26.8 0.0 33 32-66 25-57 (114)
53 PF09604 Potass_KdpF: F subuni 32.2 15 0.00033 19.3 0.0 18 52-69 7-24 (25)
54 PF14283 DUF4366: Domain of un 32.0 43 0.00094 27.2 2.6 21 52-72 170-190 (218)
55 PTZ00116 signal peptidase; Pro 31.5 2E+02 0.0044 22.7 6.2 78 39-121 8-93 (185)
56 PHA03054 IMV membrane protein; 30.5 44 0.00096 22.2 2.0 7 56-62 62-68 (72)
57 PF02468 PsbN: Photosystem II 30.3 45 0.00097 20.0 1.8 22 46-67 8-29 (43)
58 PF14927 Neurensin: Neurensin 29.7 71 0.0015 24.1 3.3 21 44-64 47-67 (140)
59 TIGR01478 STEVOR variant surfa 29.4 14 0.00031 31.2 -0.6 22 44-65 261-282 (295)
60 PF05781 MRVI1: MRVI1 protein; 29.4 50 0.0011 30.4 2.8 30 37-66 474-503 (538)
61 KOG4102 Uncharacterized conser 28.8 34 0.00074 25.0 1.3 32 5-38 30-67 (121)
62 PLN03181 glycosyltransferase; 28.8 1.2E+02 0.0027 27.2 5.0 28 32-59 25-52 (453)
63 PRK00523 hypothetical protein; 28.4 60 0.0013 21.6 2.4 20 42-61 5-24 (72)
64 PRK01844 hypothetical protein; 28.2 62 0.0013 21.6 2.4 20 42-61 4-23 (72)
65 PHA02819 hypothetical protein; 28.1 44 0.00095 22.2 1.6 8 55-62 59-66 (71)
66 PTZ00370 STEVOR; Provisional 27.6 16 0.00035 30.9 -0.6 22 44-65 257-278 (296)
67 PHA02650 hypothetical protein; 27.5 44 0.00095 22.7 1.6 20 44-63 51-70 (81)
68 KOG0860 Synaptobrevin/VAMP-lik 27.5 61 0.0013 23.7 2.5 23 35-57 88-110 (116)
69 PHA02687 ORF061 late transcrip 27.5 42 0.00092 26.7 1.7 18 5-22 70-87 (231)
70 PF06837 Fijivirus_P9-2: Fijiv 27.3 29 0.00063 27.5 0.8 29 32-60 105-133 (214)
71 PHA03048 IMV membrane protein; 25.9 91 0.002 21.7 3.0 31 38-68 43-74 (93)
72 PF05545 FixQ: Cbb3-type cytoc 25.7 22 0.00048 21.5 -0.1 10 59-68 24-33 (49)
73 PF12734 CYSTM: Cysteine-rich 25.6 1.1E+02 0.0025 17.4 3.0 15 32-46 16-30 (37)
74 PF07184 CTV_P33: Citrus trist 25.3 60 0.0013 26.2 2.3 25 37-61 278-302 (303)
75 COG5294 Uncharacterized protei 25.2 2.1E+02 0.0044 20.8 4.8 14 92-105 53-66 (113)
76 COG4736 CcoQ Cbb3-type cytochr 25.1 30 0.00066 22.2 0.5 16 54-69 19-34 (60)
77 smart00831 Cation_ATPase_N Cat 24.9 99 0.0022 19.1 2.9 28 33-60 34-61 (64)
78 TIGR01732 tiny_TM_bacill conse 24.4 99 0.0021 16.4 2.3 7 55-61 18-24 (26)
79 PF05454 DAG1: Dystroglycan (D 24.1 26 0.00056 29.8 0.0 17 46-62 154-170 (290)
80 PRK07718 fliL flagellar basal 24.0 70 0.0015 23.9 2.4 14 110-123 64-77 (142)
81 CHL00031 psbT photosystem II p 23.6 71 0.0015 17.9 1.7 8 64-72 22-29 (33)
82 PF02009 Rifin_STEVOR: Rifin/s 23.6 31 0.00067 29.4 0.4 19 48-66 262-280 (299)
83 TIGR02115 potass_kdpF K+-trans 23.0 14 0.0003 19.7 -1.1 17 52-68 6-22 (26)
84 PF12158 DUF3592: Protein of u 22.4 97 0.0021 22.4 2.9 10 7-16 98-107 (148)
85 COG3763 Uncharacterized protei 22.3 94 0.002 20.6 2.4 17 43-59 5-21 (71)
86 cd01324 cbb3_Oxidase_CcoQ Cyto 22.1 43 0.00093 20.4 0.7 13 57-69 23-35 (48)
87 PF06129 Chordopox_G3: Chordop 22.0 1.1E+02 0.0025 22.0 3.0 31 93-123 51-87 (109)
88 COG5325 t-SNARE complex subuni 21.7 78 0.0017 26.7 2.4 7 29-35 252-258 (283)
89 PF07009 DUF1312: Protein of u 21.4 3.1E+02 0.0066 19.4 5.7 47 71-121 30-76 (113)
90 PF12202 OSR1_C: Oxidative-str 21.3 1.8E+02 0.004 16.9 3.4 26 93-119 1-27 (38)
91 PRK14759 potassium-transportin 21.2 34 0.00074 18.7 0.1 16 53-68 12-27 (29)
92 PHA02680 ORF090 IMV phosphoryl 21.2 1.6E+02 0.0034 20.5 3.4 34 38-71 45-78 (91)
93 PF13473 Cupredoxin_1: Cupredo 21.1 58 0.0013 22.6 1.3 31 75-105 23-55 (104)
94 COG5009 MrcA Membrane carboxyp 20.8 42 0.00092 32.3 0.7 34 39-72 4-37 (797)
95 PF14874 PapD-like: Flagellar- 20.5 2.8E+02 0.0061 18.7 5.2 55 89-148 18-72 (102)
96 PF10177 DUF2371: Uncharacteri 20.5 1.9E+02 0.0042 21.8 4.1 18 44-61 42-59 (141)
97 PF06667 PspB: Phage shock pro 20.5 28 0.0006 23.4 -0.4 16 51-66 10-25 (75)
98 PF02480 Herpes_gE: Alphaherpe 20.3 34 0.00074 30.7 0.0 23 45-67 356-378 (439)
99 KOG3927 Na+/K+ ATPase, beta su 20.2 61 0.0013 27.7 1.5 24 52-76 57-83 (300)
100 PF11239 DUF3040: Protein of u 20.2 1.8E+02 0.0038 19.4 3.6 7 50-56 54-60 (82)
101 KOG4331 Polytopic membrane pro 20.0 67 0.0015 31.2 1.8 28 35-62 128-172 (865)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=99.98 E-value=1e-30 Score=211.32 Aligned_cols=151 Identities=15% Similarity=0.218 Sum_probs=125.5
Q ss_pred cCCCccchhhhHHHHHHHHHHHHHHHHhheeeEEEecCCcEEEEEEeEEeeecCC-----CCceeEEEEEEEEEecCCCe
Q 042582 31 VRESLTTRVSKTLCIIFLSLLLVAGIILFVLYLSLRPHRPRIFIHEFSIPALAQP-----NGFENAEIIFNVTARNSNQH 105 (189)
Q Consensus 31 ~r~~~~~~~~~~~~~~~~~~~~l~gi~~~i~~lvlrP~~P~f~V~~~sv~~~~~~-----~~~l~~~l~~~l~~~NPN~~ 105 (189)
.|++||++||+|+|+++ ++++++++.++|+++|||+|+|+|+++++++|+++ +..+|++++++++++|||.
T Consensus 31 ~~r~~~~~c~~~~~a~~---l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~- 106 (219)
T PLN03160 31 TRRRNCIKCCGCITATL---LILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV- 106 (219)
T ss_pred cccccceEEHHHHHHHH---HHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-
Confidence 45566666766655544 34466777788899999999999999999999973 3467888999999999998
Q ss_pred eeEEEceeEEEEEECCEEeeCCCCCCceeeCCCceEEEEEEEEeceeecChHHHHHHhhhhcCCeEEEEEEEEEEEEEEE
Q 042582 106 VGIYFDSVEGSVYYKNQQVGATPLADTFFQEPKTTTILHATLSGATLTVNSRRWMEFMHDRGQGKVGFRLEIKSTIRFQV 185 (189)
Q Consensus 106 ~~i~Y~~~~~~v~Y~g~~lg~~~~~p~f~q~~~~t~~v~~~l~~~~v~l~~~~~~~l~~d~~~G~v~l~v~~~~~vr~kv 185 (189)
++|+|+++++.++|+|+.+|.+. +|+|+|++++++.+.+++......+.+. .+|.+|..+|.++|+++++.+.++++
T Consensus 107 ~~~~Y~~~~~~v~Y~g~~vG~a~-~p~g~~~ar~T~~l~~tv~~~~~~~~~~--~~L~~D~~~G~v~l~~~~~v~gkVkv 183 (219)
T PLN03160 107 ASFKYSNTTTTIYYGGTVVGEAR-TPPGKAKARRTMRMNVTVDIIPDKILSV--PGLLTDISSGLLNMNSYTRIGGKVKI 183 (219)
T ss_pred eeEEEcCeEEEEEECCEEEEEEE-cCCcccCCCCeEEEEEEEEEEeceeccc--hhHHHHhhCCeEEEEEEEEEEEEEEE
Confidence 89999999999999999999998 9999999999999999877665433332 56999999999999998888888888
Q ss_pred EEe
Q 042582 186 STW 188 (189)
Q Consensus 186 g~~ 188 (189)
|.+
T Consensus 184 ~~i 186 (219)
T PLN03160 184 LKI 186 (219)
T ss_pred EEE
Confidence 744
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.34 E-value=5.6e-12 Score=89.03 Aligned_cols=83 Identities=27% Similarity=0.381 Sum_probs=65.4
Q ss_pred EEEEecCCCeeeEEEceeEEEEEECCEEee-CCCCCCceeeCCCceEEEEEEEEeceeecChHHHHHHhhhhcCCeEEEE
Q 042582 96 NVTARNSNQHVGIYFDSVEGSVYYKNQQVG-ATPLADTFFQEPKTTTILHATLSGATLTVNSRRWMEFMHDRGQGKVGFR 174 (189)
Q Consensus 96 ~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg-~~~~~p~f~q~~~~t~~v~~~l~~~~v~l~~~~~~~l~~d~~~G~v~l~ 174 (189)
+|+++|||. ++++|++++++++|+|+.+| ... .++|.|++++++.+.+.+..+...+ .+.+.++. .|...++
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~-~~~~~i~~~~~~~v~~~v~~~~~~l----~~~l~~~~-~~~~~~~ 73 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGS-LPPFTIPARSSTTVPVPVSVDYSDL----PRLLKDLL-AGRVPFD 73 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEE-CE-EEESSSCEEEEEEEEEEEHHHH----HHHHHHHH-HTTSCEE
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEEEECccc-cCCeEECCCCcEEEEEEEEEcHHHH----HHHHHhhh-ccccceE
Confidence 589999999 99999999999999999999 554 8999999999999988776665333 45566666 6677777
Q ss_pred EEEEEEEEEEE
Q 042582 175 LEIKSTIRFQV 185 (189)
Q Consensus 175 v~~~~~vr~kv 185 (189)
+.++++.++++
T Consensus 74 v~~~~~g~~~v 84 (101)
T PF03168_consen 74 VTYRIRGTFKV 84 (101)
T ss_dssp EEEEEEEEEE-
T ss_pred EEEEEEEEEEE
Confidence 77777777774
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.57 E-value=1e-06 Score=62.70 Aligned_cols=84 Identities=17% Similarity=0.220 Sum_probs=64.4
Q ss_pred CceeEEEEEEEEEecCCCeeeEEEceeEEEEEECCEEeeCCCCCC-ceeeCCCceEEEEEEEEeceeecChHHHHHHhhh
Q 042582 87 GFENAEIIFNVTARNSNQHVGIYFDSVEGSVYYKNQQVGATPLAD-TFFQEPKTTTILHATLSGATLTVNSRRWMEFMHD 165 (189)
Q Consensus 87 ~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~~p-~f~q~~~~t~~v~~~l~~~~v~l~~~~~~~l~~d 165 (189)
+..+..+.+.+.++|||. +++.|+.++..++|+|..+|++. .+ +...++++++.+.+.+..+ .. ....+..+
T Consensus 11 ~~~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~~~g~~v~~g~-~~~~~~ipa~~~~~v~v~~~~~-~~----~~~~~~~~ 83 (100)
T smart00769 11 SGLEIEIVLKVKVQNPNP-FPIPVNGLSYDLYLNGVELGSGE-IPDSGTLPGNGRTVLDVPVTVN-LF----LAEALIWH 83 (100)
T ss_pred cceEEEEEEEEEEECCCC-CccccccEEEEEEECCEEEEEEE-cCCCcEECCCCcEEEEEEEEee-hh----HhHHHHHh
Confidence 347899999999999998 79999999999999999999997 64 7899999999988888663 11 22344555
Q ss_pred hcCCe-EEEEEEE
Q 042582 166 RGQGK-VGFRLEI 177 (189)
Q Consensus 166 ~~~G~-v~l~v~~ 177 (189)
+.+|. ++++++.
T Consensus 84 l~~~~~~~y~l~g 96 (100)
T smart00769 84 IANGEEIPYRLDG 96 (100)
T ss_pred hccCCCccEEEEE
Confidence 54443 4444433
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=97.99 E-value=0.0003 Score=57.36 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=59.1
Q ss_pred EecCCcEEEEEEeEEeeecC--CCCceeEEEEEEEEEecCCCeeeEEEceeEEEEEECCEEeeCCCCCCc-eeeCCCceE
Q 042582 65 LRPHRPRIFIHEFSIPALAQ--PNGFENAEIIFNVTARNSNQHVGIYFDSVEGSVYYKNQQVGATPLADT-FFQEPKTTT 141 (189)
Q Consensus 65 lrP~~P~f~V~~~sv~~~~~--~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~~p~-f~q~~~~t~ 141 (189)
+-||.-.++-.++......+ .++.+..++.-.|.+.|||. .++.-.++.+.++|....+|.+. ... ...++++.+
T Consensus 96 LfPRsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~NF-y~V~Vt~~s~qv~~~~~VVG~~~-~~~~~~I~Prs~~ 173 (238)
T PF07092_consen 96 LFPRSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPNF-YPVTVTNLSIQVLYMKTVVGKGK-NSNITVIGPRSSK 173 (238)
T ss_pred EeCcEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCCE-EEEEEEeEEEEEEEEEeEEeeeE-ecceEEecccCCc
Confidence 34774444433333332222 35668899999999999997 89999999999999999999886 543 466777777
Q ss_pred EEEEEEEe
Q 042582 142 ILHATLSG 149 (189)
Q Consensus 142 ~v~~~l~~ 149 (189)
.+..++..
T Consensus 174 q~~~tV~t 181 (238)
T PF07092_consen 174 QVNYTVKT 181 (238)
T ss_pred eEEEEeeE
Confidence 66665544
No 5
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=97.78 E-value=0.00015 Score=62.80 Aligned_cols=89 Identities=19% Similarity=0.299 Sum_probs=56.6
Q ss_pred cCCCccchhhhHHHHHHHHHHHHHHHHhheeeEEEecCCcEEEEEEeEEeeecC-CCCceeEEEEEEEEEecCCCeeeEE
Q 042582 31 VRESLTTRVSKTLCIIFLSLLLVAGIILFVLYLSLRPHRPRIFIHEFSIPALAQ-PNGFENAEIIFNVTARNSNQHVGIY 109 (189)
Q Consensus 31 ~r~~~~~~~~~~~~~~~~~~~~l~gi~~~i~~lvlrP~~P~f~V~~~sv~~~~~-~~~~l~~~l~~~l~~~NPN~~~~i~ 109 (189)
++++||.+...|+.+.+++++++.|++.|++. .-+| +.++.|..+.- -.+.-..-|++++.+.|||. +.|.
T Consensus 294 r~r~~~~r~~~c~~~~i~~lL~ig~~~gFv~A-ttKp------L~~v~v~~I~NVlaS~qELmfdl~V~A~NPn~-~~V~ 365 (387)
T PF12751_consen 294 RQRSWFSRFASCIYLSILLLLVIGFAIGFVFA-TTKP------LTDVQVVSIQNVLASEQELMFDLTVEAFNPNW-FTVT 365 (387)
T ss_pred ccccHHhhhhHHHHHHHHHHHHHHHHHHhhhh-cCcc------cccceEEEeeeeeeccceEEEeeEEEEECCCe-EEEE
Confidence 34567777666665555555444444444443 3444 34444443321 12334678899999999998 7999
Q ss_pred EceeEEEEEECCEEeeCC
Q 042582 110 FDSVEGSVYYKNQQVGAT 127 (189)
Q Consensus 110 Y~~~~~~v~Y~g~~lg~~ 127 (189)
.++.+++|+-+-..+|..
T Consensus 366 I~d~dldIFAKS~yvg~D 383 (387)
T PF12751_consen 366 IDDMDLDIFAKSRYVGTD 383 (387)
T ss_pred eccceeeeEecCCccCcc
Confidence 999999999876666543
No 6
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.69 E-value=0.0016 Score=49.53 Aligned_cols=79 Identities=14% Similarity=0.200 Sum_probs=63.8
Q ss_pred CCcEEEEEEeEEeeecCCCCceeEEEEEEEEEecCCCeeeEEEceeEEEEEECCEEeeCCCCCCceeeCCCceEEEEEEE
Q 042582 68 HRPRIFIHEFSIPALAQPNGFENAEIIFNVTARNSNQHVGIYFDSVEGSVYYKNQQVGATPLADTFFQEPKTTTILHATL 147 (189)
Q Consensus 68 ~~P~f~V~~~sv~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~~p~f~q~~~~t~~v~~~l 147 (189)
++|...--.+..-.... ....+-.++.++|||. ++|-...++.+++-+|..+|.+....++..++++...+.+.+
T Consensus 31 ~~p~ve~~ka~wGkvt~----s~~EiV~t~KiyNPN~-fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv~l 105 (161)
T COG5608 31 KKPGVESMKAKWGKVTN----SETEIVGTLKIYNPNP-FPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDVPL 105 (161)
T ss_pred CCCCceEEEEEEEEEec----cceEEEEEEEecCCCC-cceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEEEE
Confidence 55666555555544433 3578888999999998 799999999999999999999986788999999999999888
Q ss_pred Eece
Q 042582 148 SGAT 151 (189)
Q Consensus 148 ~~~~ 151 (189)
..+.
T Consensus 106 ~~d~ 109 (161)
T COG5608 106 RLDN 109 (161)
T ss_pred EEeh
Confidence 6664
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=89.78 E-value=2.5 Score=34.24 Aligned_cols=104 Identities=11% Similarity=0.150 Sum_probs=50.1
Q ss_pred ccccCCCccchhhhHHHHHHHHHHHHHHHHhheeeEEEecC--CcEEEEEEeEEee-------ecCC---C-CceeEEEE
Q 042582 28 AHRVRESLTTRVSKTLCIIFLSLLLVAGIILFVLYLSLRPH--RPRIFIHEFSIPA-------LAQP---N-GFENAEII 94 (189)
Q Consensus 28 ~~~~r~~~~~~~~~~~~~~~~~~~~l~gi~~~i~~lvlrP~--~P~f~V~~~sv~~-------~~~~---~-~~l~~~l~ 94 (189)
.+|++..+||.|+..+..++.++++ ++++.++=-=+|+ .-.++++++.++. +|++ + ..-|.|.
T Consensus 31 ~~r~~~~~c~~~~~a~~l~l~~v~~---~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~- 106 (219)
T PLN03160 31 TRRRNCIKCCGCITATLLILATTIL---VLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV- 106 (219)
T ss_pred cccccceEEHHHHHHHHHHHHHHHH---heeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-
Confidence 3555666556666666666633322 2333333334442 2355555555431 2221 0 1113444
Q ss_pred EEEEEecCCCeeeEEEceeEEEEEECCEEeeCCCCCCceeeCCCceEE
Q 042582 95 FNVTARNSNQHVGIYFDSVEGSVYYKNQQVGATPLADTFFQEPKTTTI 142 (189)
Q Consensus 95 ~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~~p~f~q~~~~t~~ 142 (189)
+.+..+ |..+.++|+...+.- ..+..+. .++..+..-+.+.
T Consensus 107 ~~~~Y~--~~~~~v~Y~g~~vG~----a~~p~g~-~~ar~T~~l~~tv 147 (219)
T PLN03160 107 ASFKYS--NTTTTIYYGGTVVGE----ARTPPGK-AKARRTMRMNVTV 147 (219)
T ss_pred eeEEEc--CeEEEEEECCEEEEE----EEcCCcc-cCCCCeEEEEEEE
Confidence 445554 344789997764432 2344444 5555555555553
No 8
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=85.27 E-value=0.23 Score=31.79 Aligned_cols=8 Identities=25% Similarity=0.501 Sum_probs=3.6
Q ss_pred HHHhheee
Q 042582 55 GIILFVLY 62 (189)
Q Consensus 55 gi~~~i~~ 62 (189)
++.+++.|
T Consensus 51 ~lG~~~~~ 58 (60)
T PF06072_consen 51 GLGALVAW 58 (60)
T ss_pred HHHHHhhc
Confidence 34444444
No 9
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=76.87 E-value=6.4 Score=29.03 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=31.9
Q ss_pred HHHHHHHHHhheeeEE--EecCCcEEEEEEeEEeeecCCCCceeEEEEEEEEEecCCCe
Q 042582 49 SLLLVAGIILFVLYLS--LRPHRPRIFIHEFSIPALAQPNGFENAEIIFNVTARNSNQH 105 (189)
Q Consensus 49 ~~~~l~gi~~~i~~lv--lrP~~P~f~V~~~sv~~~~~~~~~l~~~l~~~l~~~NPN~~ 105 (189)
..+++++++.+++|.+ -+++.|.+.+......+- ....+-+-++++|-...
T Consensus 11 s~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r~------~~gqyyVpF~V~N~gg~ 63 (122)
T TIGR02588 11 STLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVERM------QTGQYYVPFAIHNLGGT 63 (122)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeEE------eCCEEEEEEEEEeCCCc
Confidence 3445566666666665 456789998877665431 23446667777776553
No 10
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=75.91 E-value=5.8 Score=31.72 Aligned_cols=11 Identities=18% Similarity=0.480 Sum_probs=4.5
Q ss_pred hhHHHHHHHHH
Q 042582 40 SKTLCIIFLSL 50 (189)
Q Consensus 40 ~~~~~~~~~~~ 50 (189)
+..+|.+++.+
T Consensus 50 ~~~~~~~~~Gi 60 (200)
T PF05473_consen 50 LFIICGILIGI 60 (200)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 11
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.96 E-value=2.6 Score=33.14 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHHHHHhheeeEEEecCCcEEEEEEeEE
Q 042582 40 SKTLCIIFLSLLLVAGIILFVLYLSLRPHRPRIFIHEFSI 79 (189)
Q Consensus 40 ~~~~~~~~~~~~~l~gi~~~i~~lvlrP~~P~f~V~~~sv 79 (189)
-+|+|.+++++.++++ ++++.+++.|+.|...+.+++=
T Consensus 11 WKw~f~iLLAln~l~~--~~i~~~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 11 WKWLFFILLALNTLLA--VLIALFVLSPREEPTHLEDASE 48 (197)
T ss_pred HHHHHHHHHHHHHHHH--HHhheeeccCCCCCchhhccCc
Confidence 3566666666555444 6666678899987666665553
No 12
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=70.67 E-value=11 Score=30.49 Aligned_cols=23 Identities=22% Similarity=0.662 Sum_probs=14.5
Q ss_pred hhhHHHHHHHHHHHHHHHHhhee
Q 042582 39 VSKTLCIIFLSLLLVAGIILFVL 61 (189)
Q Consensus 39 ~~~~~~~~~~~~~~l~gi~~~i~ 61 (189)
..-.+|.|++++++++..++|+-
T Consensus 128 ~amLIClIIIAVLfLICT~LfLS 150 (227)
T PF05399_consen 128 MAMLICLIIIAVLFLICTLLFLS 150 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777666665543
No 13
>PRK05529 cell division protein FtsQ; Provisional
Probab=69.70 E-value=11 Score=31.10 Aligned_cols=43 Identities=5% Similarity=0.057 Sum_probs=27.8
Q ss_pred CcEEEEEEeEEeeecC-C-------------CC--------------ceeEEEEEEEEEecCCCeeeEEEce
Q 042582 69 RPRIFIHEFSIPALAQ-P-------------NG--------------FENAEIIFNVTARNSNQHVGIYFDS 112 (189)
Q Consensus 69 ~P~f~V~~~sv~~~~~-~-------------~~--------------~l~~~l~~~l~~~NPN~~~~i~Y~~ 112 (189)
.|.|.|.+++|++-+. + .+ .+-.-=+++++-+.||. +.|.-.+
T Consensus 58 Sp~~~v~~I~V~Gn~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~P~t-l~I~V~E 128 (255)
T PRK05529 58 SPLLALRSIEVAGNMRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKPPGT-IVVRVVE 128 (255)
T ss_pred CCceEEEEEEEECCccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeCCCE-EEEEEEE
Confidence 4889999999976432 2 01 11223467788889997 7788644
No 14
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=69.51 E-value=19 Score=26.80 Aligned_cols=74 Identities=15% Similarity=0.090 Sum_probs=46.0
Q ss_pred EEEEeEEeeecC-CCCceeEEEEEEEEEecCCCeeeEEEceeEEEEE-ECCEEeeCCCCCC----------ceeeCCCce
Q 042582 73 FIHEFSIPALAQ-PNGFENAEIIFNVTARNSNQHVGIYFDSVEGSVY-YKNQQVGATPLAD----------TFFQEPKTT 140 (189)
Q Consensus 73 ~V~~~sv~~~~~-~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~-Y~g~~lg~~~~~p----------~f~q~~~~t 140 (189)
.++.+++.+..+ ....-.-.+.++.++.|... ....|-.++++++ -+|+.+++-...| .-..+++.+
T Consensus 49 ~~~~l~i~~~~~~~~~~~~~~l~v~g~i~N~~~-~~~~~P~l~l~L~D~~g~~l~~r~~~P~~yl~~~~~~~~~l~pg~~ 127 (149)
T PF11906_consen 49 DIDALKIESSDLRPVPDGPGVLVVSGTIRNRAD-FPQALPALELSLLDAQGQPLARRVFTPADYLPPGLAAQAGLPPGES 127 (149)
T ss_pred CcceEEEeeeeEEeecCCCCEEEEEEEEEeCCC-CcccCceEEEEEECCCCCEEEEEEEChHHhcccccccccccCCCCe
Confidence 444444444333 11223567888889999987 5789989999988 6788777654223 223455555
Q ss_pred EEEEEEE
Q 042582 141 TILHATL 147 (189)
Q Consensus 141 ~~v~~~l 147 (189)
..+.+.+
T Consensus 128 ~~~~~~~ 134 (149)
T PF11906_consen 128 VPFRLRL 134 (149)
T ss_pred EEEEEEe
Confidence 5555544
No 15
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=66.20 E-value=52 Score=24.49 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=38.4
Q ss_pred HhheeeEEEec--CCcEEEEEEeEEeeecCCCCceeEEEEEEEEEecCCCeeeEEEceeEEEEEECCEEeeC
Q 042582 57 ILFVLYLSLRP--HRPRIFIHEFSIPALAQPNGFENAEIIFNVTARNSNQHVGIYFDSVEGSVYYKNQQVGA 126 (189)
Q Consensus 57 ~~~i~~lvlrP--~~P~f~V~~~sv~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~ 126 (189)
+.+++|.++.. +++..++.+.+- ++ .+-.+.+..+++|-.+ ..+..=.+++++..+++..++
T Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~--l~-----~~~~~~v~g~V~N~g~-~~i~~c~i~~~l~~~~~~~~n 96 (149)
T PF09624_consen 33 IPFFGYYWLDKYLKKIELTLTSQKR--LQ-----YSESFYVDGTVTNTGK-FTIKKCKITVKLYNDKQVSGN 96 (149)
T ss_pred HHHHHHHHHhhhcCCceEEEeeeee--ee-----eccEEEEEEEEEECCC-CEeeEEEEEEEEEeCCCccCc
Confidence 33344444443 555665555443 32 2456777889999987 478777788888886544443
No 16
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=63.67 E-value=22 Score=27.22 Aligned_cols=16 Identities=6% Similarity=-0.176 Sum_probs=10.6
Q ss_pred EEEceeEEEEEECCEE
Q 042582 108 IYFDSVEGSVYYKNQQ 123 (189)
Q Consensus 108 i~Y~~~~~~v~Y~g~~ 123 (189)
-+|=.+++++.+.+..
T Consensus 78 ~rylkv~i~L~~~~~~ 93 (162)
T PRK07021 78 DRVLYVGLTLRLPDEA 93 (162)
T ss_pred ceEEEEEEEEEECCHH
Confidence 5676777777776644
No 17
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=61.95 E-value=62 Score=25.57 Aligned_cols=19 Identities=5% Similarity=-0.003 Sum_probs=16.8
Q ss_pred ecCCcEEEEEEeEEeeecC
Q 042582 66 RPHRPRIFIHEFSIPALAQ 84 (189)
Q Consensus 66 rP~~P~f~V~~~sv~~~~~ 84 (189)
.++.|.|.+++++...++.
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~ 55 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNP 55 (192)
T ss_pred CCCCCCEEEeccEEEEECC
Confidence 4677999999999999887
No 18
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=58.83 E-value=16 Score=26.30 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=8.3
Q ss_pred EEECCEEeeCCC
Q 042582 117 VYYKNQQVGATP 128 (189)
Q Consensus 117 v~Y~g~~lg~~~ 128 (189)
..|++.++|.-.
T Consensus 70 ~~~d~aeVGrre 81 (112)
T PF14155_consen 70 LDYDGAEVGRRE 81 (112)
T ss_pred EeCCCCEEEEEE
Confidence 357788888654
No 19
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=57.49 E-value=14 Score=25.26 Aligned_cols=32 Identities=25% Similarity=0.188 Sum_probs=13.4
Q ss_pred cccCCCccchhhhHHHHHHHHHHHHHHHHhhe
Q 042582 29 HRVRESLTTRVSKTLCIIFLSLLLVAGIILFV 60 (189)
Q Consensus 29 ~~~r~~~~~~~~~~~~~~~~~~~~l~gi~~~i 60 (189)
.|-+-+||..-++.+.++++.+++++-+++.+
T Consensus 22 ~r~~iPc~p~~lKrlliivvVvVlvVvvivg~ 53 (93)
T PF08999_consen 22 GRFGIPCCPVNLKRLLIIVVVVVLVVVVIVGA 53 (93)
T ss_dssp -----SSS-SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCCccccccceEEEEEEeeehhHHHHHHH
Confidence 34455676655555555555444444444333
No 20
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=57.20 E-value=1e+02 Score=24.89 Aligned_cols=40 Identities=13% Similarity=0.109 Sum_probs=31.9
Q ss_pred CCCceeEEEEEEEEEecCCCeeeEEEce--eEEEEEECCEEee
Q 042582 85 PNGFENAEIIFNVTARNSNQHVGIYFDS--VEGSVYYKNQQVG 125 (189)
Q Consensus 85 ~~~~l~~~l~~~l~~~NPN~~~~i~Y~~--~~~~v~Y~g~~lg 125 (189)
+...+...-+.++.++=||+ +.+.+.. .+..++|+|..+.
T Consensus 33 ~gqklq~~~~~~v~v~RPdk-lr~~~~gd~~~~~~~yDGkt~T 74 (214)
T PF09865_consen 33 DGQKLQFSSSGTVTVQRPDK-LRIDRRGDGADREFYYDGKTFT 74 (214)
T ss_pred CCceEEEEEEEEEEEeCCCe-EEEEEEcCCcceEEEECCCEEE
Confidence 34567788889999999996 8899843 5788999997765
No 21
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=56.10 E-value=44 Score=25.76 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHhheeeEEE
Q 042582 40 SKTLCIIFLSLLLVAGIILFVLYLSL 65 (189)
Q Consensus 40 ~~~~~~~~~~~~~l~gi~~~i~~lvl 65 (189)
..|+.++++++++++|+.+.++|+..
T Consensus 17 ~~~I~liv~ivl~~~a~~~~~~~~~~ 42 (159)
T COG1580 17 SLWILLIVLIVLLALAGAGYFFWFGS 42 (159)
T ss_pred eeehHHHHHHHHHHHHHHHHHHhhhc
Confidence 44566666677777777777777765
No 22
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=56.08 E-value=81 Score=23.37 Aligned_cols=56 Identities=25% Similarity=0.408 Sum_probs=36.4
Q ss_pred CCceeEEEEEEEEEecCCCeeeEEEceeEEEEEE--CCEEeeCCCCCCceeeCCCceEEEEE
Q 042582 86 NGFENAEIIFNVTARNSNQHVGIYFDSVEGSVYY--KNQQVGATPLADTFFQEPKTTTILHA 145 (189)
Q Consensus 86 ~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y--~g~~lg~~~~~p~f~q~~~~t~~v~~ 145 (189)
+.....+|+++|++||.+.+-+|...+.+ || +|..+-+- .-.|...+|-.+..+.+
T Consensus 18 ~~~~~~~Lt~tLSiRNtd~~~~i~i~~v~---Yydt~G~lvr~y-l~~Pi~L~Pl~t~~~vV 75 (125)
T PF11322_consen 18 NKHRPFNLTATLSIRNTDPTDPIYITSVD---YYDTDGKLVRSY-LDKPIYLKPLATTEFVV 75 (125)
T ss_pred CCCceEeEEEEEEEEcCCCCCCEEEEEEE---EECCCCeEhHHh-cCCCeEcCCCceEEEEE
Confidence 44567899999999998877777765442 44 35554443 13466777766665543
No 23
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=54.24 E-value=28 Score=25.24 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=21.1
Q ss_pred eeEEEEEEEEEecCCCeeeEEEceeEEE
Q 042582 89 ENAEIIFNVTARNSNQHVGIYFDSVEGS 116 (189)
Q Consensus 89 l~~~l~~~l~~~NPN~~~~i~Y~~~~~~ 116 (189)
-..++.+++.+.||.. +++..+.+.+.
T Consensus 98 ~g~~~~~~~~l~NPS~-~ti~lG~v~~~ 124 (125)
T PF12505_consen 98 DGINLNATVTLPNPSP-LTIDLGNVTLN 124 (125)
T ss_pred CcEEEEEEEEEcCCCe-EEEEeccEEEe
Confidence 4677888899999997 78877776654
No 24
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=50.92 E-value=19 Score=22.81 Aligned_cols=20 Identities=35% Similarity=0.536 Sum_probs=13.1
Q ss_pred HHHHHHHHHhheeeEEEecC
Q 042582 49 SLLLVAGIILFVLYLSLRPH 68 (189)
Q Consensus 49 ~~~~l~gi~~~i~~lvlrP~ 68 (189)
++++++.++++++|+.-||+
T Consensus 37 ~l~~~~~~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 37 TLAAVFLFIVVFVYLKTRPR 56 (56)
T ss_pred HHHHHHHHHhheeEEeccCC
Confidence 33444556677788888885
No 25
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=49.93 E-value=34 Score=28.42 Aligned_cols=22 Identities=27% Similarity=0.217 Sum_probs=16.7
Q ss_pred ceeEEEEEEEEEecCCCeeeEE
Q 042582 88 FENAEIIFNVTARNSNQHVGIY 109 (189)
Q Consensus 88 ~l~~~l~~~l~~~NPN~~~~i~ 109 (189)
.+...=++++.++|||.++.=.
T Consensus 105 ~~~S~rnvtvnarn~~g~v~~~ 126 (292)
T KOG3950|consen 105 YLQSARNVTVNARNPNGKVTGQ 126 (292)
T ss_pred EEEeccCeeEEccCCCCceeee
Confidence 4566778999999999876433
No 26
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=46.96 E-value=25 Score=27.61 Aligned_cols=15 Identities=13% Similarity=0.080 Sum_probs=10.2
Q ss_pred EEceeEEEEEECCEE
Q 042582 109 YFDSVEGSVYYKNQQ 123 (189)
Q Consensus 109 ~Y~~~~~~v~Y~g~~ 123 (189)
+|=.+.+.+.+.+..
T Consensus 103 ryLkv~i~Le~~~~~ 117 (182)
T PRK08455 103 RYLKTSISLELSNEK 117 (182)
T ss_pred eEEEEEEEEEECCHh
Confidence 676777777776644
No 27
>PF05170 AsmA: AsmA family; InterPro: IPR007844 The AsmA protein is involved in the assembly of outer membrane proteins in Escherichia coli []. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant []. AsmA may have a role in LPS biogenesis [].
Probab=46.72 E-value=96 Score=28.50 Aligned_cols=95 Identities=9% Similarity=0.130 Sum_probs=50.9
Q ss_pred cEEEEEEeEEeeecCCCCceeEEEEEEEEEecCCCeeeEEEceeEEEEEECCEEeeCCCCCCceeeCCCceEEEEEEEEe
Q 042582 70 PRIFIHEFSIPALAQPNGFENAEIIFNVTARNSNQHVGIYFDSVEGSVYYKNQQVGATPLADTFFQEPKTTTILHATLSG 149 (189)
Q Consensus 70 P~f~V~~~sv~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~~p~f~q~~~~t~~v~~~l~~ 149 (189)
-.+++.++++.++.++ ++. +++++-+.. +..+++.+.+ |+|..=+.+. +.. ......+++...+
T Consensus 440 ~~l~~~~l~~~~l~i~------~~~--~~~~~~~G~--l~l~~l~~~l-~~G~~~~~~~-ld~----~~~~~~~~~~~~~ 503 (604)
T PF05170_consen 440 LTLSAGSLKANGLPIS------NLK--LQLKAKDGL--LTLDPLSAKL-YGGSLSGSAS-LDA----RQDPPQYSLNLNL 503 (604)
T ss_pred EEEEhhheEECCceec------ccE--EEEEecCCe--EEEeeeeEec-CCcEEEEEEE-Eec----cCCCccEEEeeee
Confidence 3445555555544442 222 333444443 4445666665 7887666665 432 2223356777777
Q ss_pred ceeecChHHHHHHhhhhcCCeEEEEEEEEEE
Q 042582 150 ATLTVNSRRWMEFMHDRGQGKVGFRLEIKST 180 (189)
Q Consensus 150 ~~v~l~~~~~~~l~~d~~~G~v~l~v~~~~~ 180 (189)
+++++.+-..+-...+.-.|...+++.+++.
T Consensus 504 ~~v~l~~Ll~~~~~~~~l~G~~~~~~~l~g~ 534 (604)
T PF05170_consen 504 RGVQLQPLLQDLALPDPLSGTGDLNLDLTGQ 534 (604)
T ss_pred CCcchHHHHhhhccccCceEEEEEEEEEEeC
Confidence 8877766533322234457777777666653
No 28
>PF04573 SPC22: Signal peptidase subunit; InterPro: IPR007653 Translocation of polypeptide chains across the endoplasmic reticulum membrane is triggered by signal sequences. During translocation of the nascent chain through the membrane, the signal sequence of most secretory and membrane proteins is cleaved off. Cleavage occurs by the signal peptidase complex (SPC), which consists of four subunits in yeast and five in mammals. This family is is described as similar to microsomal signal peptidase 23 kDa subunit. Found in eukaryotes [, ].; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=46.25 E-value=1e+02 Score=24.11 Aligned_cols=41 Identities=17% Similarity=0.429 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhheeeEEEecCCcEEEE--EEeEEee
Q 042582 39 VSKTLCIIFLSLLLVAGIILFVLYLSLRPHRPRIFI--HEFSIPA 81 (189)
Q Consensus 39 ~~~~~~~~~~~~~~l~gi~~~i~~lvlrP~~P~f~V--~~~sv~~ 81 (189)
+-..++.++.+++++++++.+-.+ +.+..|..++ .++.+..
T Consensus 8 ~N~vfs~~~~vl~~l~~~~~~s~~--~~~~~~~~~i~v~~~~v~~ 50 (175)
T PF04573_consen 8 LNAVFSFALTVLAFLAALIFLSSY--FHPPSPSVSISVSNVQVRK 50 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--ccCCCCceEEEEEEEEEEe
Confidence 333344444444443333333333 4555555444 3444443
No 29
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=45.35 E-value=39 Score=26.66 Aligned_cols=23 Identities=22% Similarity=0.532 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhheeeEEEecCCc
Q 042582 48 LSLLLVAGIILFVLYLSLRPHRP 70 (189)
Q Consensus 48 ~~~~~l~gi~~~i~~lvlrP~~P 70 (189)
.++.+++++++.++..++.|..|
T Consensus 9 ~Lla~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 9 ILLALNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHHHHHhheeeEEEccCCC
Confidence 34455666667777778888865
No 30
>PHA02844 putative transmembrane protein; Provisional
Probab=44.86 E-value=20 Score=24.00 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHhheeeE
Q 042582 42 TLCIIFLSLLLVAGIILFVLYL 63 (189)
Q Consensus 42 ~~~~~~~~~~~l~gi~~~i~~l 63 (189)
|...+++++.+++.+++.++||
T Consensus 48 ~~~~ii~i~~v~~~~~~~flYL 69 (75)
T PHA02844 48 TKIWILTIIFVVFATFLTFLYL 69 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444555555
No 31
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=44.73 E-value=24 Score=28.86 Aligned_cols=16 Identities=19% Similarity=0.362 Sum_probs=10.9
Q ss_pred HHHHHHhheeeEEEec
Q 042582 52 LVAGIILFVLYLSLRP 67 (189)
Q Consensus 52 ~l~gi~~~i~~lvlrP 67 (189)
.+..+++++.|+.+||
T Consensus 233 ~lsl~~Ia~aW~~yRP 248 (248)
T PF07787_consen 233 SLSLLTIALAWLFYRP 248 (248)
T ss_pred HHHHHHHHHhheeeCc
Confidence 3344566778888887
No 32
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=44.39 E-value=9.4 Score=27.79 Aligned_cols=11 Identities=9% Similarity=0.501 Sum_probs=6.9
Q ss_pred eeeEEEecCCc
Q 042582 60 VLYLSLRPHRP 70 (189)
Q Consensus 60 i~~lvlrP~~P 70 (189)
++|+.+||..=
T Consensus 15 i~yf~iRPQkK 25 (113)
T PRK06531 15 LIFFMQRQQKK 25 (113)
T ss_pred HHHheechHHH
Confidence 34567999643
No 33
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=42.79 E-value=35 Score=22.28 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=12.4
Q ss_pred HHHHHhheeeEEEecC
Q 042582 53 VAGIILFVLYLSLRPH 68 (189)
Q Consensus 53 l~gi~~~i~~lvlrP~ 68 (189)
+.+....+.|++.+|+
T Consensus 13 vaa~a~~atwviVq~~ 28 (66)
T PF10907_consen 13 VAAAAGAATWVIVQPR 28 (66)
T ss_pred HHhhhceeEEEEECCC
Confidence 4556677888899998
No 34
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=41.66 E-value=36 Score=30.00 Aligned_cols=16 Identities=31% Similarity=1.049 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhheee
Q 042582 47 FLSLLLVAGIILFVLY 62 (189)
Q Consensus 47 ~~~~~~l~gi~~~i~~ 62 (189)
++-++||+|+++|.+|
T Consensus 34 LIQ~LIIlgLVLFmVY 49 (442)
T PF06637_consen 34 LIQFLIILGLVLFMVY 49 (442)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5566777777777776
No 35
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=41.41 E-value=83 Score=24.19 Aligned_cols=16 Identities=6% Similarity=0.167 Sum_probs=10.6
Q ss_pred EEEceeEEEEEECCEE
Q 042582 108 IYFDSVEGSVYYKNQQ 123 (189)
Q Consensus 108 i~Y~~~~~~v~Y~g~~ 123 (189)
.+|=.+.+.+.+.+..
T Consensus 86 ~ryLkv~i~L~~~~~~ 101 (166)
T PRK12785 86 VQYLKLKVVLEVKDEK 101 (166)
T ss_pred ceEEEEEEEEEECCHH
Confidence 4676777777776644
No 36
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=39.85 E-value=9.5 Score=28.14 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=10.8
Q ss_pred HHHHHHHHHhheeeEEEec-CCcEEEEEE
Q 042582 49 SLLLVAGIILFVLYLSLRP-HRPRIFIHE 76 (189)
Q Consensus 49 ~~~~l~gi~~~i~~lvlrP-~~P~f~V~~ 76 (189)
+.+-++|++++++|++.|= |++...++.
T Consensus 73 v~aGvIg~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 73 VMAGVIGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 3344456667777776432 444444433
No 37
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=39.63 E-value=41 Score=25.76 Aligned_cols=23 Identities=17% Similarity=-0.073 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHhheeeEEEec
Q 042582 45 IIFLSLLLVAGIILFVLYLSLRP 67 (189)
Q Consensus 45 ~~~~~~~~l~gi~~~i~~lvlrP 67 (189)
+.++++++++.+.++++|-+-|.
T Consensus 14 igi~Ll~lLl~cgiGcvwhwkhr 36 (158)
T PF11770_consen 14 IGISLLLLLLLCGIGCVWHWKHR 36 (158)
T ss_pred HHHHHHHHHHHHhcceEEEeecc
Confidence 33444556666778888887664
No 38
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=39.56 E-value=31 Score=33.38 Aligned_cols=25 Identities=16% Similarity=0.380 Sum_probs=14.3
Q ss_pred CccchhhhHHHHHHHHHHHHHHHHhh
Q 042582 34 SLTTRVSKTLCIIFLSLLLVAGIILF 59 (189)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~gi~~~ 59 (189)
.|.+.|+ .++.+++++++++|++.+
T Consensus 136 ~c~R~~l-~~~L~~~~~~il~g~i~a 160 (806)
T PF05478_consen 136 ACRRGCL-GILLLLLTLIILFGVICA 160 (806)
T ss_pred ccchHHH-HHHHHHHHHHHHHHHHHH
Confidence 4444444 455566666666776654
No 39
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=39.23 E-value=43 Score=27.74 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=23.6
Q ss_pred HHHHHHHHhheeeEEEecCCcEEEEEEeEEee
Q 042582 50 LLLVAGIILFVLYLSLRPHRPRIFIHEFSIPA 81 (189)
Q Consensus 50 ~~~l~gi~~~i~~lvlrP~~P~f~V~~~sv~~ 81 (189)
.++++++.++++|...-++.|.|.+..+++++
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~v~G 69 (269)
T COG1589 38 YLVLLLLVLVVLWVLILLSLPYFPIRKVSVSG 69 (269)
T ss_pred HHHHHHHHHHHHheehhhhcCCccceEEEEec
Confidence 33445556667777778888888999999875
No 40
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=38.71 E-value=1.3e+02 Score=20.81 Aligned_cols=60 Identities=12% Similarity=0.089 Sum_probs=34.1
Q ss_pred ceeEEEEEEEEEecCCCe--eeEEEceeEEEEEECCEEeeCCC-CCCceeeCCCceEEEEEEE
Q 042582 88 FENAEIIFNVTARNSNQH--VGIYFDSVEGSVYYKNQQVGATP-LADTFFQEPKTTTILHATL 147 (189)
Q Consensus 88 ~l~~~l~~~l~~~NPN~~--~~i~Y~~~~~~v~Y~g~~lg~~~-~~p~f~q~~~~t~~v~~~l 147 (189)
.+.-++++.+++.||... -.+.-.=....++|.|....... .......+++++..+...+
T Consensus 12 ~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG~~~~~~~~~~~~~~l~p~~~~~~~~~i 74 (107)
T PF00927_consen 12 VVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTGLTRDQFKKEKFEVTLKPGETKSVEVTI 74 (107)
T ss_dssp BTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTTTEEEEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred cCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECCcccccEeEEEcceeeCCCCEEEEEEEE
Confidence 356688999999999652 12222223456688886532111 0334566777777777655
No 41
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=37.67 E-value=29 Score=26.66 Aligned_cols=22 Identities=18% Similarity=0.498 Sum_probs=15.0
Q ss_pred HHHHHHHhheeeEEEecCCcEE
Q 042582 51 LLVAGIILFVLYLSLRPHRPRI 72 (189)
Q Consensus 51 ~~l~gi~~~i~~lvlrP~~P~f 72 (189)
.+|++++++++|+..|++.=.|
T Consensus 61 ~ill~il~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 61 PILLGILALVFIFCIRRKKTDF 82 (154)
T ss_pred HHHHHHHHhheeEEEecccCcc
Confidence 4445677777888888875433
No 42
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=37.38 E-value=15 Score=20.75 Aligned_cols=14 Identities=7% Similarity=0.565 Sum_probs=6.8
Q ss_pred HHHHHHHHhheeeE
Q 042582 50 LLLVAGIILFVLYL 63 (189)
Q Consensus 50 ~~~l~gi~~~i~~l 63 (189)
.+.+++++++++|+
T Consensus 11 vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 11 VVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHH
Confidence 33444555555553
No 43
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.27 E-value=13 Score=28.36 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=22.2
Q ss_pred hhhHHHHHHHHHHHHHHHHhheeeEEEecC
Q 042582 39 VSKTLCIIFLSLLLVAGIILFVLYLSLRPH 68 (189)
Q Consensus 39 ~~~~~~~~~~~~~~l~gi~~~i~~lvlrP~ 68 (189)
.+.++.+++++|+.+.+.+++.+|....|.
T Consensus 5 ~~~~i~ii~viflai~~s~~~~~~~s~~P~ 34 (161)
T COG5353 5 HLIIIIIILVIFLAIILSIALFFWKSMKPY 34 (161)
T ss_pred EeeeehhHHHHHHHHHHHHHHHHhHhcCcc
Confidence 445566666777777888888888888874
No 44
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=37.02 E-value=54 Score=19.90 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhheeeEEEec
Q 042582 45 IIFLSLLLVAGIILFVLYLSLRP 67 (189)
Q Consensus 45 ~~~~~~~~l~gi~~~i~~lvlrP 67 (189)
.++++..+++++....+|..+-|
T Consensus 10 ~~i~i~~lL~~~TgyaiYtaFGp 32 (46)
T PRK13183 10 LAITILAILLALTGFGIYTAFGP 32 (46)
T ss_pred HHHHHHHHHHHHhhheeeeccCC
Confidence 34566677789999999988876
No 45
>KOG2621 consensus Prohibitins and stomatins of the PID superfamily [Energy production and conversion]
Probab=35.01 E-value=2.8e+02 Score=23.50 Aligned_cols=34 Identities=3% Similarity=-0.006 Sum_probs=24.5
Q ss_pred EEEEEEeEEeeecCC--------CCceeEEEEEEEEEecCCC
Q 042582 71 RIFIHEFSIPALAQP--------NGFENAEIIFNVTARNSNQ 104 (189)
Q Consensus 71 ~f~V~~~sv~~~~~~--------~~~l~~~l~~~l~~~NPN~ 104 (189)
.|+..++.+..||+. +.+++.+-.+..++.||-.
T Consensus 91 t~~kVDLRt~sfnVPpqeIltkDsvtvsVdAvVyyri~dpi~ 132 (288)
T KOG2621|consen 91 TFRKVDLRTQSFNVPPQEILTKDSVTISVDAVVYYRISDPII 132 (288)
T ss_pred eeeeeeeeEEeecCCHHHHhcccceEEEeceEEEEEecCHHH
Confidence 788889999999984 2355666666677777743
No 46
>PF05473 Herpes_UL45: UL45 protein; InterPro: IPR008646 This family consists several UL45 proteins and homologues found in the herpes simplex virus family. The herpes simplex virus UL45 gene encodes an 18 kDa virion envelope protein whose function remains unknown. It has been suggested that the 18 kDa UL45 gene product is required for efficient growth in the central nervous system at low doses and may play an important role under the conditions of a naturally acquired infection []. The Equine herpesvirus 1 UL45 protein represents a type II membrane glycoprotein which has found to be non-essential for EHV-1 growth in vitro but deletion reduces the viruses' replication efficiency [].
Probab=34.89 E-value=87 Score=24.96 Aligned_cols=16 Identities=13% Similarity=0.366 Sum_probs=6.7
Q ss_pred hhhhHHHHHHHHHHHH
Q 042582 38 RVSKTLCIIFLSLLLV 53 (189)
Q Consensus 38 ~~~~~~~~~~~~~~~l 53 (189)
.++.++..++++++++
T Consensus 52 ~~~~~~~Gili~~~vi 67 (200)
T PF05473_consen 52 IICGILIGILITIFVI 67 (200)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 47
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=34.87 E-value=69 Score=24.66 Aligned_cols=26 Identities=4% Similarity=0.065 Sum_probs=15.7
Q ss_pred EEEEEecCCCeeeEEEceeEEEEEECCEE
Q 042582 95 FNVTARNSNQHVGIYFDSVEGSVYYKNQQ 123 (189)
Q Consensus 95 ~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~ 123 (189)
+++....++ +-+|=...+.+.+++..
T Consensus 76 fvvNl~~~~---~~ryLkv~i~l~~~d~~ 101 (170)
T PRK05696 76 FVFNVPGNG---RDRLVQIKVQLMVRGSD 101 (170)
T ss_pred EEEEecCCC---CceEEEEEEEEEECCHH
Confidence 334444444 35677788888877654
No 48
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=34.56 E-value=37 Score=24.68 Aligned_cols=26 Identities=15% Similarity=0.469 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHhheeeEEEec
Q 042582 42 TLCIIFLSLLLVAGIILFVLYLSLRP 67 (189)
Q Consensus 42 ~~~~~~~~~~~l~gi~~~i~~lvlrP 67 (189)
++...++++++-++++.++.+|+++-
T Consensus 63 ffvglii~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 63 FFVGLIIVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHHHheeec
Confidence 44555666677778888888887764
No 49
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=34.54 E-value=26 Score=27.04 Aligned_cols=17 Identities=47% Similarity=0.962 Sum_probs=11.2
Q ss_pred HHHHHHHhheeeEEEec
Q 042582 51 LLVAGIILFVLYLSLRP 67 (189)
Q Consensus 51 ~~l~gi~~~i~~lvlrP 67 (189)
++++++++.++|+.+||
T Consensus 12 l~l~~~~~y~~W~~~rp 28 (157)
T PF06092_consen 12 LFLLACILYFLWLTLRP 28 (157)
T ss_pred HHHHHHHHHhhhhccCC
Confidence 44445444788888887
No 50
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=34.14 E-value=68 Score=22.60 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhheeeEE-Ee
Q 042582 46 IFLSLLLVAGIILFVLYLS-LR 66 (189)
Q Consensus 46 ~~~~~~~l~gi~~~i~~lv-lr 66 (189)
++++++.++.++.+|.|++ +|
T Consensus 67 ~lls~v~IlVily~IyYFVILR 88 (101)
T PF06024_consen 67 SLLSFVCILVILYAIYYFVILR 88 (101)
T ss_pred HHHHHHHHHHHHhhheEEEEEe
Confidence 3334444444444555664 44
No 51
>CHL00020 psbN photosystem II protein N
Probab=32.60 E-value=62 Score=19.35 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHhheeeEEEec
Q 042582 45 IIFLSLLLVAGIILFVLYLSLRP 67 (189)
Q Consensus 45 ~~~~~~~~l~gi~~~i~~lvlrP 67 (189)
.++++..++++++...+|..+-|
T Consensus 7 ~~i~i~~ll~~~Tgy~iYtaFGp 29 (43)
T CHL00020 7 VAIFISGLLVSFTGYALYTAFGQ 29 (43)
T ss_pred HHHHHHHHHHHhhheeeeeccCC
Confidence 34556667788899999988776
No 52
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=32.35 E-value=15 Score=26.78 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=0.0
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHHhheeeEEEe
Q 042582 32 RESLTTRVSKTLCIIFLSLLLVAGIILFVLYLSLR 66 (189)
Q Consensus 32 r~~~~~~~~~~~~~~~~~~~~l~gi~~~i~~lvlr 66 (189)
|.+| +|++.+.-+.+++.++|+|-+ +..|+++.
T Consensus 25 ~~s~-sra~~vagltvLa~LLiAGQa-~TaYfv~~ 57 (114)
T PF09307_consen 25 RGSC-SRALKVAGLTVLACLLIAGQA-VTAYFVFQ 57 (114)
T ss_dssp -----------------------------------
T ss_pred CCCc-cchhHHHHHHHHHHHHHHhHH-HHHHHHHH
Confidence 3344 455555555555555555544 44556665
No 53
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=32.19 E-value=15 Score=19.34 Aligned_cols=18 Identities=28% Similarity=0.794 Sum_probs=9.3
Q ss_pred HHHHHHhheeeEEEecCC
Q 042582 52 LVAGIILFVLYLSLRPHR 69 (189)
Q Consensus 52 ~l~gi~~~i~~lvlrP~~ 69 (189)
+.+++.+..+|-.++|++
T Consensus 7 v~~~L~~YL~~aLl~PEr 24 (25)
T PF09604_consen 7 VAVALFVYLFYALLRPER 24 (25)
T ss_pred HHHHHHHHHHHHHhCccc
Confidence 334444444444577763
No 54
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=32.00 E-value=43 Score=27.17 Aligned_cols=21 Identities=10% Similarity=0.170 Sum_probs=10.3
Q ss_pred HHHHHHhheeeEEEecCCcEE
Q 042582 52 LVAGIILFVLYLSLRPHRPRI 72 (189)
Q Consensus 52 ~l~gi~~~i~~lvlrP~~P~f 72 (189)
+++|..++..+-+.|||....
T Consensus 170 ~l~gGGa~yYfK~~K~K~~~~ 190 (218)
T PF14283_consen 170 ALIGGGAYYYFKFYKPKQEEK 190 (218)
T ss_pred HHhhcceEEEEEEeccccccc
Confidence 333443333333688876543
No 55
>PTZ00116 signal peptidase; Provisional
Probab=31.54 E-value=2e+02 Score=22.75 Aligned_cols=78 Identities=14% Similarity=0.090 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhheeeEEEec-CCcEEEEEEeEEeeecC-C---C--CceeEEEEEEEE-EecCCCeeeEEE
Q 042582 39 VSKTLCIIFLSLLLVAGIILFVLYLSLRP-HRPRIFIHEFSIPALAQ-P---N--GFENAEIIFNVT-ARNSNQHVGIYF 110 (189)
Q Consensus 39 ~~~~~~~~~~~~~~l~gi~~~i~~lvlrP-~~P~f~V~~~sv~~~~~-~---~--~~l~~~l~~~l~-~~NPN~~~~i~Y 110 (189)
.-..+|.++.+++++.++..+.-. .++| ..|...|+=.+|..+.. + + ..++.++++.|+ +-|=|.|.-+-|
T Consensus 8 ~Nal~~f~~~vLa~l~~~~~~s~~-f~~~~~~~~~~i~v~~V~~~~~~~~~~~D~a~i~fdl~~DL~~lfnWNtKqlFvy 86 (185)
T PTZ00116 8 LNVLSYSMALCFLILCLFNYGTSF-YLFDEKEMSTNIKVKSVKRLVYNRHIKGDEAVLSLDLSYDMSKAFNWNLKQLFLY 86 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHh-hccCCCCceeeEEEeecccccccCCCCceeEEEEEeeccCchhcCCccccEEEEE
Confidence 333444444444333333322222 2344 44545555444556653 1 1 233444444443 335566654444
Q ss_pred ceeEEEEEECC
Q 042582 111 DSVEGSVYYKN 121 (189)
Q Consensus 111 ~~~~~~v~Y~g 121 (189)
+.+.|.+
T Consensus 87 ----v~a~Y~t 93 (185)
T PTZ00116 87 ----VLVTYET 93 (185)
T ss_pred ----EEEEEcC
Confidence 5555643
No 56
>PHA03054 IMV membrane protein; Provisional
Probab=30.53 E-value=44 Score=22.17 Aligned_cols=7 Identities=43% Similarity=1.013 Sum_probs=2.6
Q ss_pred HHhheee
Q 042582 56 IILFVLY 62 (189)
Q Consensus 56 i~~~i~~ 62 (189)
+++.++|
T Consensus 62 ~l~~flY 68 (72)
T PHA03054 62 LLLIYLY 68 (72)
T ss_pred HHHHHHH
Confidence 3333333
No 57
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=30.32 E-value=45 Score=19.97 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHhheeeEEEec
Q 042582 46 IFLSLLLVAGIILFVLYLSLRP 67 (189)
Q Consensus 46 ~~~~~~~l~gi~~~i~~lvlrP 67 (189)
++++..++++++...+|..+-|
T Consensus 8 ~i~i~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 8 AIFISCLLVSITGYAIYTAFGP 29 (43)
T ss_pred HHHHHHHHHHHHhhhhhheeCC
Confidence 4455667788888889988865
No 58
>PF14927 Neurensin: Neurensin
Probab=29.74 E-value=71 Score=24.14 Aligned_cols=21 Identities=29% Similarity=0.263 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhheeeEE
Q 042582 44 CIIFLSLLLVAGIILFVLYLS 64 (189)
Q Consensus 44 ~~~~~~~~~l~gi~~~i~~lv 64 (189)
+.++-++++++|++++++-..
T Consensus 47 ~~i~g~l~Ll~Gi~~l~vgY~ 67 (140)
T PF14927_consen 47 GFISGLLLLLLGIVALTVGYL 67 (140)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 444445566677666544333
No 59
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=29.41 E-value=14 Score=31.20 Aligned_cols=22 Identities=27% Similarity=0.491 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHhheeeEEE
Q 042582 44 CIIFLSLLLVAGIILFVLYLSL 65 (189)
Q Consensus 44 ~~~~~~~~~l~gi~~~i~~lvl 65 (189)
|.+..+++++++++++|+|+++
T Consensus 261 cgiaalvllil~vvliiLYiWl 282 (295)
T TIGR01478 261 YGIAALVLIILTVVLIILYIWL 282 (295)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566667777777764
No 60
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=29.37 E-value=50 Score=30.43 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=18.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHhheeeEEEe
Q 042582 37 TRVSKTLCIIFLSLLLVAGIILFVLYLSLR 66 (189)
Q Consensus 37 ~~~~~~~~~~~~~~~~l~gi~~~i~~lvlr 66 (189)
.+.++.+|+.+.+++|+++++.|+.-+.|+
T Consensus 474 pKanK~LWIsvAliVLLAaLlSfLtg~~fq 503 (538)
T PF05781_consen 474 PKANKVLWISVALIVLLAALLSFLTGLFFQ 503 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 344566677776666666666665555554
No 61
>KOG4102 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.81 E-value=34 Score=25.04 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCCCccccccccccc------cccCCCccch
Q 042582 5 DRLPVRSTPQNQPIKRHNTARYYA------HRVRESLTTR 38 (189)
Q Consensus 5 ~~l~~~~~~~~~~~~~~~~~~~~~------~~~r~~~~~~ 38 (189)
.+|++|-.++ +.+|+.+|..-. .|.++.|||.
T Consensus 30 ~~lvlrL~~~--~~~r~V~W~~~vVDNEhMgrkKSKcCCI 67 (121)
T KOG4102|consen 30 EQLVLRLRPP--PPERRVRWTEGVVDNEHMGRKKSKCCCI 67 (121)
T ss_pred ccccccccCC--CCCCceeeeccccccccccccccceeEE
Confidence 4667776666 335567676522 3445556553
No 62
>PLN03181 glycosyltransferase; Provisional
Probab=28.80 E-value=1.2e+02 Score=27.22 Aligned_cols=28 Identities=21% Similarity=0.081 Sum_probs=20.4
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHHhh
Q 042582 32 RESLTTRVSKTLCIIFLSLLLVAGIILF 59 (189)
Q Consensus 32 r~~~~~~~~~~~~~~~~~~~~l~gi~~~ 59 (189)
..+|.+.++.++..++++++++.++..+
T Consensus 25 ~~~~~~~~~~f~~ga~~a~ll~~~~~s~ 52 (453)
T PLN03181 25 RASCFSDGVLFLGGAVVAFLLVWSLASI 52 (453)
T ss_pred CccchhhhHHHHHHHHHHHHHHHHHHhh
Confidence 4467778888888888777777766654
No 63
>PRK00523 hypothetical protein; Provisional
Probab=28.43 E-value=60 Score=21.65 Aligned_cols=20 Identities=25% Similarity=0.185 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHhhee
Q 042582 42 TLCIIFLSLLLVAGIILFVL 61 (189)
Q Consensus 42 ~~~~~~~~~~~l~gi~~~i~ 61 (189)
++++.+.++++++|+++.++
T Consensus 5 ~l~I~l~i~~li~G~~~Gff 24 (72)
T PRK00523 5 GLALGLGIPLLIVGGIIGYF 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666655543
No 64
>PRK01844 hypothetical protein; Provisional
Probab=28.24 E-value=62 Score=21.61 Aligned_cols=20 Identities=35% Similarity=0.338 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHhhee
Q 042582 42 TLCIIFLSLLLVAGIILFVL 61 (189)
Q Consensus 42 ~~~~~~~~~~~l~gi~~~i~ 61 (189)
|+.+++.++.+++|++++++
T Consensus 4 ~~~I~l~I~~li~G~~~Gff 23 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFF 23 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666655543
No 65
>PHA02819 hypothetical protein; Provisional
Probab=28.06 E-value=44 Score=22.17 Aligned_cols=8 Identities=38% Similarity=0.858 Sum_probs=3.1
Q ss_pred HHHhheee
Q 042582 55 GIILFVLY 62 (189)
Q Consensus 55 gi~~~i~~ 62 (189)
++++.++|
T Consensus 59 ~~~~~flY 66 (71)
T PHA02819 59 VIIFIIFY 66 (71)
T ss_pred HHHHHHHH
Confidence 33333344
No 66
>PTZ00370 STEVOR; Provisional
Probab=27.63 E-value=16 Score=30.93 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhheeeEEE
Q 042582 44 CIIFLSLLLVAGIILFVLYLSL 65 (189)
Q Consensus 44 ~~~~~~~~~l~gi~~~i~~lvl 65 (189)
|.+..+++++++++++|+|+++
T Consensus 257 ygiaalvllil~vvliilYiwl 278 (296)
T PTZ00370 257 YGIAALVLLILAVVLIILYIWL 278 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666677777764
No 67
>PHA02650 hypothetical protein; Provisional
Probab=27.51 E-value=44 Score=22.69 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHhheeeE
Q 042582 44 CIIFLSLLLVAGIILFVLYL 63 (189)
Q Consensus 44 ~~~~~~~~~l~gi~~~i~~l 63 (189)
..+++++++++.+++.++||
T Consensus 51 ~~ii~i~~v~i~~l~~flYL 70 (81)
T PHA02650 51 NFIFLIFSLIIVALFSFFVF 70 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444445554
No 68
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.48 E-value=61 Score=23.70 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=9.5
Q ss_pred ccchhhhHHHHHHHHHHHHHHHH
Q 042582 35 LTTRVSKTLCIIFLSLLLVAGII 57 (189)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~l~gi~ 57 (189)
|.-.|--.+|++++++++++.++
T Consensus 88 wWkn~Km~~il~~v~~i~l~iii 110 (116)
T KOG0860|consen 88 WWKNCKMRIILGLVIIILLVVII 110 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444443333
No 69
>PHA02687 ORF061 late transcription factor VLTF-4; Provisional
Probab=27.46 E-value=42 Score=26.67 Aligned_cols=18 Identities=28% Similarity=0.562 Sum_probs=13.7
Q ss_pred CCCCCCCCCCCCCccccc
Q 042582 5 DRLPVRSTPQNQPIKRHN 22 (189)
Q Consensus 5 ~~l~~~~~~~~~~~~~~~ 22 (189)
.||||+.++|++|.+-+.
T Consensus 70 eqlpvpe~vp~~p~ktpk 87 (231)
T PHA02687 70 EQLPVPESVPPAPVKTPK 87 (231)
T ss_pred hcCCCCCCCCCCCcCCcc
Confidence 589999998877655554
No 70
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=27.30 E-value=29 Score=27.54 Aligned_cols=29 Identities=10% Similarity=0.203 Sum_probs=19.2
Q ss_pred CCCccchhhhHHHHHHHHHHHHHHHHhhe
Q 042582 32 RESLTTRVSKTLCIIFLSLLLVAGIILFV 60 (189)
Q Consensus 32 r~~~~~~~~~~~~~~~~~~~~l~gi~~~i 60 (189)
|.=||-++.|++|.+++.+++-..+.+.+
T Consensus 105 rcV~CNpl~R~~~SivfTi~fy~~~~V~i 133 (214)
T PF06837_consen 105 RCVCCNPLIRGIFSIVFTILFYTLLFVSI 133 (214)
T ss_pred hhhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777888888888777654444443
No 71
>PHA03048 IMV membrane protein; Provisional
Probab=25.94 E-value=91 Score=21.72 Aligned_cols=31 Identities=10% Similarity=0.300 Sum_probs=19.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHhheeeE-EEecC
Q 042582 38 RVSKTLCIIFLSLLLVAGIILFVLYL-SLRPH 68 (189)
Q Consensus 38 ~~~~~~~~~~~~~~~l~gi~~~i~~l-vlrP~ 68 (189)
|...++.++++..++++|++++-.|- .-.|+
T Consensus 43 wRalsii~FIlgivl~lG~~ifsmy~r~C~~~ 74 (93)
T PHA03048 43 WRALSGIAFVLGIVMTIGMLIYSMWGRYCTPS 74 (93)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 33344455566777888998888885 33443
No 72
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=25.69 E-value=22 Score=21.46 Aligned_cols=10 Identities=20% Similarity=0.411 Sum_probs=4.9
Q ss_pred heeeEEEecC
Q 042582 59 FVLYLSLRPH 68 (189)
Q Consensus 59 ~i~~lvlrP~ 68 (189)
++++.+++|+
T Consensus 24 gi~~w~~~~~ 33 (49)
T PF05545_consen 24 GIVIWAYRPR 33 (49)
T ss_pred HHHHHHHccc
Confidence 3333355676
No 73
>PF12734 CYSTM: Cysteine-rich TM module stress tolerance
Probab=25.63 E-value=1.1e+02 Score=17.41 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=7.3
Q ss_pred CCCccchhhhHHHHH
Q 042582 32 RESLTTRVSKTLCII 46 (189)
Q Consensus 32 r~~~~~~~~~~~~~~ 46 (189)
..+|+.-|+..+|..
T Consensus 16 ~~g~l~gClaaLcCC 30 (37)
T PF12734_consen 16 GDGCLAGCLAALCCC 30 (37)
T ss_pred CCChHHHHHHHHHHH
Confidence 334555555544443
No 74
>PF07184 CTV_P33: Citrus tristeza virus P33 protein; InterPro: IPR010803 This family consists of several Citrus tristeza virus (CTV) P33 proteins. The function of P33 is unclear although it is known that the protein is not needed for virion formation [].
Probab=25.30 E-value=60 Score=26.18 Aligned_cols=25 Identities=20% Similarity=0.671 Sum_probs=14.9
Q ss_pred chhhhHHHHHHHHHHHHHHHHhhee
Q 042582 37 TRVSKTLCIIFLSLLLVAGIILFVL 61 (189)
Q Consensus 37 ~~~~~~~~~~~~~~~~l~gi~~~i~ 61 (189)
+.||.-.|..++.++++.|+.++|+
T Consensus 278 rvccyavcvlvvs~limsgllaii~ 302 (303)
T PF07184_consen 278 RVCCYAVCVLVVSLLIMSGLLAIIF 302 (303)
T ss_pred HHHHHHHHHHHHHHHHHhcchheEe
Confidence 3444455666666777777666543
No 75
>COG5294 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.15 E-value=2.1e+02 Score=20.83 Aligned_cols=14 Identities=29% Similarity=0.356 Sum_probs=10.4
Q ss_pred EEEEEEEEecCCCe
Q 042582 92 EIIFNVTARNSNQH 105 (189)
Q Consensus 92 ~l~~~l~~~NPN~~ 105 (189)
..+.++.+.|-|.+
T Consensus 53 ~y~y~i~ayn~~Gk 66 (113)
T COG5294 53 GYEYTITAYNKNGK 66 (113)
T ss_pred cceeeehhhccCCc
Confidence 56678888887764
No 76
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=25.05 E-value=30 Score=22.23 Aligned_cols=16 Identities=25% Similarity=0.613 Sum_probs=9.0
Q ss_pred HHHHhheeeEEEecCC
Q 042582 54 AGIILFVLYLSLRPHR 69 (189)
Q Consensus 54 ~gi~~~i~~lvlrP~~ 69 (189)
+.+.+++.|.++||+.
T Consensus 19 ~l~fiavi~~ayr~~~ 34 (60)
T COG4736 19 TLFFIAVIYFAYRPGK 34 (60)
T ss_pred HHHHHHHHHHHhcccc
Confidence 3344445556778853
No 77
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=24.91 E-value=99 Score=19.13 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=14.0
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHHhhe
Q 042582 33 ESLTTRVSKTLCIIFLSLLLVAGIILFV 60 (189)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~l~gi~~~i 60 (189)
++....++..++-.+..++++++++.++
T Consensus 34 ~s~~~~~l~~~~~p~~~iL~~~a~is~~ 61 (64)
T smart00831 34 RSPLLRFLRQFHNPLIYILLAAAVLSAL 61 (64)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 4455555555554454444445554443
No 78
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=24.41 E-value=99 Score=16.40 Aligned_cols=7 Identities=14% Similarity=-0.083 Sum_probs=2.6
Q ss_pred HHHhhee
Q 042582 55 GIILFVL 61 (189)
Q Consensus 55 gi~~~i~ 61 (189)
-+++...
T Consensus 18 LIIiga~ 24 (26)
T TIGR01732 18 LVIVGAA 24 (26)
T ss_pred HHHhhee
Confidence 3344333
No 79
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=24.05 E-value=26 Score=29.76 Aligned_cols=17 Identities=41% Similarity=0.829 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhheee
Q 042582 46 IFLSLLLVAGIILFVLY 62 (189)
Q Consensus 46 ~~~~~~~l~gi~~~i~~ 62 (189)
+++++++++|+++.++|
T Consensus 154 VI~~iLLIA~iIa~icy 170 (290)
T PF05454_consen 154 VIAAILLIAGIIACICY 170 (290)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34444455556666665
No 80
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=24.01 E-value=70 Score=23.91 Aligned_cols=14 Identities=7% Similarity=0.135 Sum_probs=8.2
Q ss_pred EceeEEEEEECCEE
Q 042582 110 FDSVEGSVYYKNQQ 123 (189)
Q Consensus 110 Y~~~~~~v~Y~g~~ 123 (189)
|=..++.+.+.+..
T Consensus 64 ylk~~i~l~~~~~~ 77 (142)
T PRK07718 64 FIRIQFKIETDSKK 77 (142)
T ss_pred EEEEEEEEEECCHH
Confidence 44566666666543
No 81
>CHL00031 psbT photosystem II protein T
Probab=23.64 E-value=71 Score=17.93 Aligned_cols=8 Identities=25% Similarity=0.700 Sum_probs=3.4
Q ss_pred EEecCCcEE
Q 042582 64 SLRPHRPRI 72 (189)
Q Consensus 64 vlrP~~P~f 72 (189)
.+| ++|++
T Consensus 22 ~FR-ePPri 29 (33)
T CHL00031 22 FFR-EPPKV 29 (33)
T ss_pred eec-CCCCC
Confidence 344 44443
No 82
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=23.58 E-value=31 Score=29.39 Aligned_cols=19 Identities=32% Similarity=0.700 Sum_probs=10.4
Q ss_pred HHHHHHHHHHhheeeEEEe
Q 042582 48 LSLLLVAGIILFVLYLSLR 66 (189)
Q Consensus 48 ~~~~~l~gi~~~i~~lvlr 66 (189)
+++++++.++.+|.||++|
T Consensus 262 iiaIliIVLIMvIIYLILR 280 (299)
T PF02009_consen 262 IIAILIIVLIMVIIYLILR 280 (299)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444556666777654
No 83
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=22.96 E-value=14 Score=19.67 Aligned_cols=17 Identities=35% Similarity=0.931 Sum_probs=8.7
Q ss_pred HHHHHHhheeeEEEecC
Q 042582 52 LVAGIILFVLYLSLRPH 68 (189)
Q Consensus 52 ~l~gi~~~i~~lvlrP~ 68 (189)
+.+++.+..+|-.+||+
T Consensus 6 l~~~L~~YL~~aLl~PE 22 (26)
T TIGR02115 6 LAVGLFIYLFYALLRPE 22 (26)
T ss_pred HHHHHHHHHHHHHhCHH
Confidence 33444444444457775
No 84
>PF12158 DUF3592: Protein of unknown function (DUF3592); InterPro: IPR021994 This family of proteins is functionally uncharacterised.This family of proteins is found in bacteria, archaea, eukaryotes and viruses. Proteins in this family are typically between 150 and 242 amino acids in length.
Probab=22.41 E-value=97 Score=22.40 Aligned_cols=10 Identities=30% Similarity=0.467 Sum_probs=3.7
Q ss_pred CCCCCCCCCC
Q 042582 7 LPVRSTPQNQ 16 (189)
Q Consensus 7 l~~~~~~~~~ 16 (189)
.++.=.|+.|
T Consensus 98 V~V~Y~P~~P 107 (148)
T PF12158_consen 98 VTVYYNPNNP 107 (148)
T ss_pred EEEEECCcCC
Confidence 3333334433
No 85
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.28 E-value=94 Score=20.65 Aligned_cols=17 Identities=41% Similarity=0.587 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q 042582 43 LCIIFLSLLLVAGIILF 59 (189)
Q Consensus 43 ~~~~~~~~~~l~gi~~~ 59 (189)
+.++++.+.+++|++.+
T Consensus 5 lail~ivl~ll~G~~~G 21 (71)
T COG3763 5 LAILLIVLALLAGLIGG 21 (71)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455556666655
No 86
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=22.14 E-value=43 Score=20.38 Aligned_cols=13 Identities=38% Similarity=0.562 Sum_probs=6.1
Q ss_pred HhheeeEEEecCC
Q 042582 57 ILFVLYLSLRPHR 69 (189)
Q Consensus 57 ~~~i~~lvlrP~~ 69 (189)
.+++++.+++|+.
T Consensus 23 Figiv~wa~~p~~ 35 (48)
T cd01324 23 FLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHhCCCc
Confidence 3333333566753
No 87
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=22.04 E-value=1.1e+02 Score=22.02 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=17.7
Q ss_pred EEEEEEEecCC----CeeeEEEce--eEEEEEECCEE
Q 042582 93 IIFNVTARNSN----QHVGIYFDS--VEGSVYYKNQQ 123 (189)
Q Consensus 93 l~~~l~~~NPN----~~~~i~Y~~--~~~~v~Y~g~~ 123 (189)
.--++-+.||+ ..+.++|++ ..+.+.|+|..
T Consensus 51 ~~~t~lF~~~~~~~~~~v~l~Yds~~~~Vtv~~~~~k 87 (109)
T PF06129_consen 51 LLNTVLFLNPDKPVSSQVILYYDSRSGTVTVAYKNKK 87 (109)
T ss_pred ceeeEEecCCCcccccceEEEEccCCCeEEEEECCcE
Confidence 33445567776 346677765 34566666543
No 88
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=21.67 E-value=78 Score=26.70 Aligned_cols=7 Identities=29% Similarity=0.387 Sum_probs=2.8
Q ss_pred cccCCCc
Q 042582 29 HRVRESL 35 (189)
Q Consensus 29 ~~~r~~~ 35 (189)
|.+|++-
T Consensus 252 hqrrt~k 258 (283)
T COG5325 252 HQRRTKK 258 (283)
T ss_pred HHhhhcc
Confidence 3344443
No 89
>PF07009 DUF1312: Protein of unknown function (DUF1312); InterPro: IPR010739 This family consists of several bacterial proteins of around 120 residues in length. The function of this family is unknown.; PDB: 4ESN_B 1NPP_B 1M1G_D 1NPR_A 1M1H_A 2KPP_A 3LD7_C.
Probab=21.42 E-value=3.1e+02 Score=19.44 Aligned_cols=47 Identities=9% Similarity=-0.015 Sum_probs=26.0
Q ss_pred EEEEEEeEEeeecCCCCceeEEEEEEEEEecCCCeeeEEEceeEEEEEECC
Q 042582 71 RIFIHEFSIPALAQPNGFENAEIIFNVTARNSNQHVGIYFDSVEGSVYYKN 121 (189)
Q Consensus 71 ~f~V~~~sv~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g 121 (189)
.+++++=.+..+.++...- +-++.+.-+.....+..++..+.+...+
T Consensus 30 ~I~~~g~~~~~i~L~~~~~----~~~i~i~~~~g~~~i~i~~g~vrv~~s~ 76 (113)
T PF07009_consen 30 VIYVDGKEVKRIPLDKVNE----DKTIEIDGDGGYNTIEIKDGKVRVIESD 76 (113)
T ss_dssp EEEETTEEEEEEETTS-BS----EEEEEEETTTCEEEEEEETTEEEEEEES
T ss_pred EEEECCEEEEEEECCCCCC----CEEEEEecCCcEEEEEEECCEEEEEECC
Confidence 3444444444555532111 2233337777677788888888887743
No 90
>PF12202 OSR1_C: Oxidative-stress-responsive kinase 1 C terminal; InterPro: IPR024678 Oxidative-stress-responsive kinase 1 (OSR1) is involved in the signalling cascade which activates Na/K/2Cl co-transporter during osmotic stress. This entry represents the CCT domain found in OSR1, STE20/SPS1-related kinase and in WNK activators []. This domain is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue F that may be functionally important. ; PDB: 2V3S_A 2LRU_A.
Probab=21.34 E-value=1.8e+02 Score=16.86 Aligned_cols=26 Identities=12% Similarity=0.195 Sum_probs=14.5
Q ss_pred EEEEEEEecCCCeeeEEEce-eEEEEEE
Q 042582 93 IIFNVTARNSNQHVGIYFDS-VEGSVYY 119 (189)
Q Consensus 93 l~~~l~~~NPN~~~~i~Y~~-~~~~v~Y 119 (189)
+++.|+++||.++-+ .|.. -.+...|
T Consensus 1 i~l~Lrv~d~kK~~~-k~ken~aI~F~F 27 (38)
T PF12202_consen 1 INLRLRVRDPKKRKG-KHKENEAIEFEF 27 (38)
T ss_dssp EEEEEEEC-TTSSSS-S--TCEEEEEEE
T ss_pred CcEEEEEeccccccC-ccccCccEEEEE
Confidence 467899999988544 5533 3344444
No 91
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=21.23 E-value=34 Score=18.68 Aligned_cols=16 Identities=31% Similarity=0.825 Sum_probs=8.3
Q ss_pred HHHHHhheeeEEEecC
Q 042582 53 VAGIILFVLYLSLRPH 68 (189)
Q Consensus 53 l~gi~~~i~~lvlrP~ 68 (189)
.+|+.+..++-.+||+
T Consensus 12 a~~L~vYL~~ALlrPE 27 (29)
T PRK14759 12 SLGLLIYLTYALLRPE 27 (29)
T ss_pred HHHHHHHHHHHHhCcc
Confidence 3344444444457886
No 92
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=21.22 E-value=1.6e+02 Score=20.47 Aligned_cols=34 Identities=15% Similarity=0.333 Sum_probs=23.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHhheeeEEEecCCcE
Q 042582 38 RVSKTLCIIFLSLLLVAGIILFVLYLSLRPHRPR 71 (189)
Q Consensus 38 ~~~~~~~~~~~~~~~l~gi~~~i~~lvlrP~~P~ 71 (189)
|....+.++++..++++|++++-.|---+|+.|.
T Consensus 45 wRalSii~FIlG~vl~lGilifs~y~~C~~~~~~ 78 (91)
T PHA02680 45 WRALSVTCFIVGAVLLLGLFVFSMYRKCSGSMPY 78 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcee
Confidence 3334445556777888898888888766676665
No 93
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=21.07 E-value=58 Score=22.55 Aligned_cols=31 Identities=6% Similarity=0.041 Sum_probs=10.8
Q ss_pred EEeEEeeecCCCCceeE--EEEEEEEEecCCCe
Q 042582 75 HEFSIPALAQPNGFENA--EIIFNVTARNSNQH 105 (189)
Q Consensus 75 ~~~sv~~~~~~~~~l~~--~l~~~l~~~NPN~~ 105 (189)
..++++++..+++.+.. .=.+++.++|.+..
T Consensus 23 v~I~~~~~~f~P~~i~v~~G~~v~l~~~N~~~~ 55 (104)
T PF13473_consen 23 VTITVTDFGFSPSTITVKAGQPVTLTFTNNDSR 55 (104)
T ss_dssp -------EEEES-EEEEETTCEEEEEEEE-SSS
T ss_pred ccccccCCeEecCEEEEcCCCeEEEEEEECCCC
Confidence 34444444443333333 22456777787553
No 94
>COG5009 MrcA Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]
Probab=20.82 E-value=42 Score=32.26 Aligned_cols=34 Identities=32% Similarity=0.471 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhheeeEEEecCCcEE
Q 042582 39 VSKTLCIIFLSLLLVAGIILFVLYLSLRPHRPRI 72 (189)
Q Consensus 39 ~~~~~~~~~~~~~~l~gi~~~i~~lvlrP~~P~f 72 (189)
..++++.++++++++.+.+++++++.+.|+.|.+
T Consensus 4 ~i~~~l~i~~~~~l~g~~~~~~~~~~~~~dLPd~ 37 (797)
T COG5009 4 LIKYLLGILVTLILLGAGALAGLYLYISPDLPDV 37 (797)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCh
Confidence 3344444444444444445666666777887754
No 95
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=20.54 E-value=2.8e+02 Score=18.65 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=31.1
Q ss_pred eeEEEEEEEEEecCCCeeeEEEceeEEEEEECCEEeeCCCCCCceeeCCCceEEEEEEEE
Q 042582 89 ENAEIIFNVTARNSNQHVGIYFDSVEGSVYYKNQQVGATPLADTFFQEPKTTTILHATLS 148 (189)
Q Consensus 89 l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~~p~f~q~~~~t~~v~~~l~ 148 (189)
.......+++++|-.. ...+|.=..-. ..+..+.-. -++....++.+..+.+++.
T Consensus 18 ~g~~~~~~v~l~N~s~-~p~~f~v~~~~--~~~~~~~v~--~~~g~l~PG~~~~~~V~~~ 72 (102)
T PF14874_consen 18 VGQTYSRTVTLTNTSS-IPARFRVRQPE--SLSSFFSVE--PPSGFLAPGESVELEVTFS 72 (102)
T ss_pred cCCEEEEEEEEEECCC-CCEEEEEEeCC--cCCCCEEEE--CCCCEECCCCEEEEEEEEE
Confidence 3456678888899876 46666311100 011122211 2234577788888898887
No 96
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=20.52 E-value=1.9e+02 Score=21.83 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHhhee
Q 042582 44 CIIFLSLLLVAGIILFVL 61 (189)
Q Consensus 44 ~~~~~~~~~l~gi~~~i~ 61 (189)
+.++-++++++|++..++
T Consensus 42 ~l~lG~lvllvGiaMAv~ 59 (141)
T PF10177_consen 42 FLLLGILVLLVGIAMAVL 59 (141)
T ss_pred HHHHHHHHHHHhhHhhee
Confidence 334445555666654443
No 97
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=20.51 E-value=28 Score=23.45 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=7.9
Q ss_pred HHHHHHHhheeeEEEe
Q 042582 51 LLVAGIILFVLYLSLR 66 (189)
Q Consensus 51 ~~l~gi~~~i~~lvlr 66 (189)
++++.++++..|+++|
T Consensus 10 livf~ifVap~WL~lH 25 (75)
T PF06667_consen 10 LIVFMIFVAPIWLILH 25 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334445555666543
No 98
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=20.34 E-value=34 Score=30.74 Aligned_cols=23 Identities=13% Similarity=0.314 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhheeeEEEec
Q 042582 45 IIFLSLLLVAGIILFVLYLSLRP 67 (189)
Q Consensus 45 ~~~~~~~~l~gi~~~i~~lvlrP 67 (189)
.+++.++++++++++++|+.++-
T Consensus 356 ~vVlgvavlivVv~viv~vc~~~ 378 (439)
T PF02480_consen 356 GVVLGVAVLIVVVGVIVWVCLRC 378 (439)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHhheeeee
Confidence 33444455555556666665443
No 99
>KOG3927 consensus Na+/K+ ATPase, beta subunit [Inorganic ion transport and metabolism]
Probab=20.22 E-value=61 Score=27.68 Aligned_cols=24 Identities=13% Similarity=0.416 Sum_probs=15.3
Q ss_pred HHHHHHhheeeE---EEecCCcEEEEEE
Q 042582 52 LVAGIILFVLYL---SLRPHRPRIFIHE 76 (189)
Q Consensus 52 ~l~gi~~~i~~l---vlrP~~P~f~V~~ 76 (189)
++++++++++|. .+.|+.|++. ++
T Consensus 57 ~la~lf~~~~~~~~~tidp~~P~~~-~~ 83 (300)
T KOG3927|consen 57 VLAALFAGCMWFMLQTIDPKVPKYK-DS 83 (300)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCccc-cc
Confidence 344444444454 3789999998 44
No 100
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=20.21 E-value=1.8e+02 Score=19.45 Aligned_cols=7 Identities=71% Similarity=1.061 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 042582 50 LLLVAGI 56 (189)
Q Consensus 50 ~~~l~gi 56 (189)
.++++|+
T Consensus 54 ~llv~G~ 60 (82)
T PF11239_consen 54 ALLVAGV 60 (82)
T ss_pred HHHHHHH
Confidence 3344444
No 101
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=20.00 E-value=67 Score=31.18 Aligned_cols=28 Identities=21% Similarity=0.274 Sum_probs=0.0
Q ss_pred ccchh-----------------hhHHHHHHHHHHHHHHHHhheee
Q 042582 35 LTTRV-----------------SKTLCIIFLSLLLVAGIILFVLY 62 (189)
Q Consensus 35 ~~~~~-----------------~~~~~~~~~~~~~l~gi~~~i~~ 62 (189)
|||+| |+..|+.+..+++.+++++.+++
T Consensus 128 ccc~C~~rc~~r~~~~~~~~~a~kR~~~~l~Llvl~i~~ligv~~ 172 (865)
T KOG4331|consen 128 CCCRCCRRCGGRIKSALKQDDACKRPCCELELLVLAIELLIGVFR 172 (865)
T ss_pred heeeeHhhhcCCCCchhccCcHhhhhHHHHHHHHHHHHHHHHHHH
Done!