Query 042582
Match_columns 189
No_of_seqs 122 out of 802
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 13:01:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042582.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042582hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.4 2.2E-06 7.4E-11 66.1 10.3 101 68-179 43-145 (174)
2 1xo8_A AT1G01470; structural g 98.2 1.1E-06 3.9E-11 66.2 4.8 102 68-180 20-123 (151)
3 3but_A Uncharacterized protein 98.2 2.2E-05 7.6E-10 58.0 11.0 73 90-163 17-89 (136)
4 2knc_B Integrin beta-3; transm 39.0 18 0.00061 23.5 2.2 20 44-63 14-33 (79)
5 1spf_A Pulmonary surfactant-as 37.4 39 0.0013 18.1 3.0 20 34-53 4-23 (35)
6 2lk9_A Bone marrow stromal ant 32.7 16 0.00055 19.8 1.0 14 46-59 10-23 (35)
7 3kdp_B Sodium/potassium-transp 31.8 17 0.00059 29.5 1.5 43 34-77 11-55 (286)
8 2l6w_A Beta-type platelet-deri 36.9 11 0.00036 21.3 0.0 6 67-72 33-38 (39)
9 3ixz_B Potassium-transporting 29.5 23 0.00078 28.8 1.8 39 34-73 33-74 (290)
10 2l0d_A Cell surface protein; s 28.7 1.2E+02 0.0041 20.8 5.3 52 90-147 18-69 (114)
11 3s8f_C Cytochrome C oxidase po 28.4 16 0.00055 19.9 0.5 15 49-63 10-24 (34)
12 3p5s_A CD38 molecule; cyclic A 27.9 13 0.00043 30.2 0.0 26 43-68 11-36 (278)
13 2k9j_B Integrin beta-3; transm 26.0 42 0.0014 19.1 2.1 17 46-62 15-31 (43)
14 2jpw_A Troponin I, cardiac mus 23.6 30 0.001 18.2 1.0 15 10-24 11-25 (32)
15 2kog_A Vesicle-associated memb 20.8 40 0.0014 23.6 1.5 6 34-39 91-96 (119)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.41 E-value=2.2e-06 Score=66.06 Aligned_cols=101 Identities=12% Similarity=0.138 Sum_probs=78.9
Q ss_pred CCcEEEEEEeEEeeecCCCCceeEEEEEEEEEecCCCeeeEEEceeEEEEEECCEEeeCCCCCC-ceeeCCCceEEEEEE
Q 042582 68 HRPRIFIHEFSIPALAQPNGFENAEIIFNVTARNSNQHVGIYFDSVEGSVYYKNQQVGATPLAD-TFFQEPKTTTILHAT 146 (189)
Q Consensus 68 ~~P~f~V~~~sv~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~~p-~f~q~~~~t~~v~~~ 146 (189)
+.|.+++.++++.+++. ....+.+.|+++|||. ..+.+..++.++.-+|..|+++. .+ ++..++++++.+.+.
T Consensus 43 ~~PeV~v~~v~~~~~~l----~~~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~~lasG~-s~~~~tIpa~g~~~v~Vp 116 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTR----DGVDYHAKVSVKNPYS-QSIPICQISYILKSATRTIASGT-IPDPGSLVGSGTTVLDVP 116 (174)
T ss_dssp CCCEEEEEEEEEEEECS----SSEEEEEEEEEEECSS-SCCBCCSEEEEEEESSSCEEEEE-ESCCCBCCSSEEEEEEEE
T ss_pred CCCEEEEEEeEEecccc----ceEEEEEEEEEECCCC-CCccccceEEEEEECCEEEEEEe-cCCCceECCCCcEEEEEE
Confidence 78999999999998877 3588999999999998 79999999999999999999997 55 588999999999887
Q ss_pred EEeceeecChHHHHHHhhhh-cCCeEEEEEEEEE
Q 042582 147 LSGATLTVNSRRWMEFMHDR-GQGKVGFRLEIKS 179 (189)
Q Consensus 147 l~~~~v~l~~~~~~~l~~d~-~~G~v~l~v~~~~ 179 (189)
+...- ....++.+++ ..+.++.++++..
T Consensus 117 v~v~~-----~~l~~~~~~l~~~~~i~Y~L~g~L 145 (174)
T 1yyc_A 117 VKVAY-----SIAVSLMKDMCTDWDIDYQLDIGL 145 (174)
T ss_dssp EEESH-----HHHHHTCCCCCSSEEECEEEEEEE
T ss_pred EEEEH-----HHHHHHHHhcCCCCccceEEEEEE
Confidence 75542 2223444454 3345666555543
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.22 E-value=1.1e-06 Score=66.16 Aligned_cols=102 Identities=13% Similarity=0.142 Sum_probs=77.3
Q ss_pred CCcEEEEEEeEEeeecCCCCceeEEEEEEEEEecCCCeeeEEEceeEEEEEECCEEeeCCCCCC-ceeeCCCceEEEEEE
Q 042582 68 HRPRIFIHEFSIPALAQPNGFENAEIIFNVTARNSNQHVGIYFDSVEGSVYYKNQQVGATPLAD-TFFQEPKTTTILHAT 146 (189)
Q Consensus 68 ~~P~f~V~~~sv~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~~p-~f~q~~~~t~~v~~~ 146 (189)
+.|.+++.++++.+++. ....+.+.|+++|||. .++.+..++.++.-+|..++++. .+ ++..++++++.+.+.
T Consensus 20 ~~P~v~v~~v~~~~~~~----~~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~~lasG~-~~~~~~ipa~g~~~v~vp 93 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNR----DSVEYLAKVSVTNPYS-HSIPICEISFTFHSAGREIGKGK-IPDPGSLKAKDMTALDIP 93 (151)
T ss_dssp CSCCCBCSEEEECCCTT----TEECEEEEEEEECSSS-SCCCCEEEEEEEESSSSCEEEEE-EEECCCCSSSSEEEEEEC
T ss_pred CCCEEEEEEeEEeccCc----ceeEEEEEEEEECCCC-CCcccccEEEEEEECCEEEEEEe-cCCCcEECCCCcEEEEEE
Confidence 67999999999987766 4678999999999998 79999999999999999999997 54 588899999988876
Q ss_pred EEeceeecChHHHHHHhhhh-cCCeEEEEEEEEEE
Q 042582 147 LSGATLTVNSRRWMEFMHDR-GQGKVGFRLEIKST 180 (189)
Q Consensus 147 l~~~~v~l~~~~~~~l~~d~-~~G~v~l~v~~~~~ 180 (189)
+..+- ....++.++. ..+.++.+++++..
T Consensus 94 v~v~~-----~~l~~~~~~l~~~~~i~Y~l~g~l~ 123 (151)
T 1xo8_A 94 VVVPY-----SILFNLARDVGVDWDIDYELQIGLT 123 (151)
T ss_dssp CCEEH-----HHHHHHHHHHHHHSEEEEEEEEEEE
T ss_pred EEEEH-----HHHHHHHHhcccCCcccEEEEEEEE
Confidence 64432 2223333342 34566666655544
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=98.18 E-value=2.2e-05 Score=58.03 Aligned_cols=73 Identities=15% Similarity=0.101 Sum_probs=59.9
Q ss_pred eEEEEEEEEEecCCCeeeEEEceeEEEEEECCEEeeCCCCCCceeeCCCceEEEEEEEEeceeecChHHHHHHh
Q 042582 90 NAEIIFNVTARNSNQHVGIYFDSVEGSVYYKNQQVGATPLADTFFQEPKTTTILHATLSGATLTVNSRRWMEFM 163 (189)
Q Consensus 90 ~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~~p~f~q~~~~t~~v~~~l~~~~v~l~~~~~~~l~ 163 (189)
...+.+.|+++|||. +++.++.++.+++..|..+|++.....+..++.+.+.+.+.+..+...+.+...+.+.
T Consensus 17 ~t~~~~~l~V~NPN~-~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v~~~i~~~~l~~~~~~hi~ 89 (136)
T 3but_A 17 QTEIVALAKVRNEDV-VPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKFSLRLNNSFLREWWVTHIA 89 (136)
T ss_dssp EEEEEEEEEEECCSS-SCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEEEEEEEHHHHTTHHHHHHH
T ss_pred EEEEEEEEEEeCCCC-cceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEEEEEEchHHhHHHHHHHhh
Confidence 578999999999997 7999999999999999999998645678999999888888887776555554334443
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=38.96 E-value=18 Score=23.55 Aligned_cols=20 Identities=10% Similarity=0.424 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhheeeE
Q 042582 44 CIIFLSLLLVAGIILFVLYL 63 (189)
Q Consensus 44 ~~~~~~~~~l~gi~~~i~~l 63 (189)
...++..++++|++++++|-
T Consensus 14 v~gvi~gilliGllllliwk 33 (79)
T 2knc_B 14 LLSVMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33455556777877777763
No 5
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=37.40 E-value=39 Score=18.13 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=9.6
Q ss_pred CccchhhhHHHHHHHHHHHH
Q 042582 34 SLTTRVSKTLCIIFLSLLLV 53 (189)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l 53 (189)
+||.--++.+.++++.++++
T Consensus 4 Pccp~~lKrLlivVvVvVlv 23 (35)
T 1spf_A 4 PCCPVNLKRLLVVVVVVVLV 23 (35)
T ss_dssp SSSCSHHHHHHHHHHHHHHH
T ss_pred CccccchheEEEEEeeehhh
Confidence 45554455555544433333
No 6
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=32.69 E-value=16 Score=19.83 Aligned_cols=14 Identities=21% Similarity=0.128 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHhh
Q 042582 46 IFLSLLLVAGIILF 59 (189)
Q Consensus 46 ~~~~~~~l~gi~~~ 59 (189)
.++.+++++++.+.
T Consensus 10 Gvl~LLviV~LgV~ 23 (35)
T 2lk9_A 10 GILVLLIIVILGVP 23 (35)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcch
Confidence 34444444444433
No 7
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=31.84 E-value=17 Score=29.53 Aligned_cols=43 Identities=12% Similarity=0.100 Sum_probs=22.8
Q ss_pred CccchhhhHHHHHHH--HHHHHHHHHhheeeEEEecCCcEEEEEEe
Q 042582 34 SLTTRVSKTLCIIFL--SLLLVAGIILFVLYLSLRPHRPRIFIHEF 77 (189)
Q Consensus 34 ~~~~~~~~~~~~~~~--~~~~l~gi~~~i~~lvlrP~~P~f~V~~~ 77 (189)
..++|....++-++| +++.++++.+.+++..+.|+.|+++ +..
T Consensus 11 T~~sW~~IllFYliFY~~La~lFa~~m~v~l~TLd~~~Pkyq-d~~ 55 (286)
T 3kdp_B 11 TGGSWFKILLFYVIFYGCLAGIFIGTIQVMLLTISEFKPTYQ-DRV 55 (286)
T ss_dssp SCSCCHHHHHHHHHHHHHHHHHHHHHHHGGGSCSCSSSCSCC-TTT
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCccc-CCC
Confidence 445565554444433 2222233334444445889999998 544
No 8
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=36.88 E-value=11 Score=21.29 Aligned_cols=6 Identities=33% Similarity=0.816 Sum_probs=3.5
Q ss_pred cCCcEE
Q 042582 67 PHRPRI 72 (189)
Q Consensus 67 P~~P~f 72 (189)
-++|++
T Consensus 33 ~qKPrY 38 (39)
T 2l6w_A 33 QKKPRY 38 (39)
Confidence 456665
No 9
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_B 2xzb_B
Probab=29.49 E-value=23 Score=28.85 Aligned_cols=39 Identities=23% Similarity=0.465 Sum_probs=18.9
Q ss_pred CccchhhhHHHHHHHHHHHHHHHH---hheeeEEEecCCcEEE
Q 042582 34 SLTTRVSKTLCIIFLSLLLVAGII---LFVLYLSLRPHRPRIF 73 (189)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~l~gi~---~~i~~lvlrP~~P~f~ 73 (189)
..++|....++-+++ -++|+|+. +.+++..+.|+.|+++
T Consensus 33 T~~sW~~IllFYliF-Y~~LaglFa~~m~v~l~Tld~~~Pkyq 74 (290)
T 3ixz_B 33 TLSRWVWISLYYVAF-YVVMSGIFALCIYVLMRTIDPYTPDYQ 74 (290)
T ss_pred chhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCCCcc
Confidence 444555544444333 12223333 3344445778787774
No 10
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=28.74 E-value=1.2e+02 Score=20.82 Aligned_cols=52 Identities=15% Similarity=0.111 Sum_probs=31.1
Q ss_pred eEEEEEEEEEecCCCeeeEEEceeEEEEEECCEEeeCCCCCCceeeCCCceEEEEEEE
Q 042582 90 NAEIIFNVTARNSNQHVGIYFDSVEGSVYYKNQQVGATPLADTFFQEPKTTTILHATL 147 (189)
Q Consensus 90 ~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~~p~f~q~~~~t~~v~~~l 147 (189)
.-..+++++++|....-. ....+.++-+|..++... +++ ..++.++.+....
T Consensus 18 ~~~~ti~atVkN~G~~~a---~~~~V~ly~~g~~v~t~~-v~~--LaaG~s~tv~~~w 69 (114)
T 2l0d_A 18 NTVNTMTATIENQGNKDS---TSFNVSLLVDGIVVDTQT-VTS--LESENSTNVDFHW 69 (114)
T ss_dssp TSEEEEEEEEEECSSSCB---CCEEEEEEETTEEEEEEE-ESC--BCBTCEEEEEEEE
T ss_pred CCeEEEEEEEEECCCCCC---CCEEEEEEECCEEEccee-ccc--ccCCCEEEEEEEE
Confidence 345677788899865321 346777777888887764 543 2333344444433
No 11
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=28.41 E-value=16 Score=19.94 Aligned_cols=15 Identities=27% Similarity=0.696 Sum_probs=7.9
Q ss_pred HHHHHHHHHhheeeE
Q 042582 49 SLLLVAGIILFVLYL 63 (189)
Q Consensus 49 ~~~~l~gi~~~i~~l 63 (189)
+.++++|++++++|+
T Consensus 10 ~~V~ilg~~I~i~W~ 24 (34)
T 3s8f_C 10 AVILVLTLTILVFWL 24 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 344555555555554
No 12
>3p5s_A CD38 molecule; cyclic ADP ribose, ECTO-ADP-ribosyl cyclase, glycosida hydrolase; HET: NAG AVU; 1.95A {Bos taurus}
Probab=27.90 E-value=13 Score=30.23 Aligned_cols=26 Identities=31% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhheeeEEEecC
Q 042582 43 LCIIFLSLLLVAGIILFVLYLSLRPH 68 (189)
Q Consensus 43 ~~~~~~~~~~l~gi~~~i~~lvlrP~ 68 (189)
+|+.++++++++.++++++-+.+.|+
T Consensus 11 ~~l~~~~~~l~~~~~~~~~~~~~~~~ 36 (278)
T 3p5s_A 11 LCWCVLLFFLVAGITGGAIGIYKWHY 36 (278)
T ss_dssp --------------------------
T ss_pred EeehHHHHHHHHHHHhheeeEEeccC
Confidence 33344433343333333333344444
No 13
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=26.04 E-value=42 Score=19.07 Aligned_cols=17 Identities=12% Similarity=0.514 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhheee
Q 042582 46 IFLSLLLVAGIILFVLY 62 (189)
Q Consensus 46 ~~~~~~~l~gi~~~i~~ 62 (189)
.++..++++|++++++|
T Consensus 15 gvi~~ivliGl~lLliw 31 (43)
T 2k9j_B 15 SVMGAILLIGLAALLIW 31 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455666777777666
No 14
>2jpw_A Troponin I, cardiac muscle; poly (L-proline) II helix, contractIle protein; HET: SEP; NMR {Synthetic}
Probab=23.55 E-value=30 Score=18.20 Aligned_cols=15 Identities=27% Similarity=0.680 Sum_probs=7.9
Q ss_pred CCCCCCCCccccccc
Q 042582 10 RSTPQNQPIKRHNTA 24 (189)
Q Consensus 10 ~~~~~~~~~~~~~~~ 24 (189)
++.|.|+|.+|..++
T Consensus 11 ~~~PaP~p~RRrSSA 25 (32)
T 2jpw_A 11 EPQPAPAPVRRRSSA 25 (32)
T ss_dssp CCCCCCCCCCCTTHH
T ss_pred CCCCCCccccccccc
Confidence 344556665555443
No 15
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=20.79 E-value=40 Score=23.57 Aligned_cols=6 Identities=0% Similarity=-0.213 Sum_probs=2.4
Q ss_pred Cccchh
Q 042582 34 SLTTRV 39 (189)
Q Consensus 34 ~~~~~~ 39 (189)
-++..+
T Consensus 91 mwwkn~ 96 (119)
T 2kog_A 91 YWWKNL 96 (119)
T ss_dssp HSCHHH
T ss_pred HHHHHH
Confidence 344433
Done!