BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042583
(206 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IOO|A Chain A, Crystal Structure Of Nicotiana Alata Gemetophytic
Self-incompatibility Associated Sf11-rnase
pdb|1IOO|B Chain B, Crystal Structure Of Nicotiana Alata Gemetophytic
Self-incompatibility Associated Sf11-rnase
Length = 196
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 89/190 (46%), Gaps = 24/190 (12%)
Query: 23 FDHFWLVQVWPSGYCLQANCSQTS-DRFIIHGLWAVNV----------------VDKTLP 65
F++ LV WP+ +C +C + + + F IHGLW NV K L
Sbjct: 2 FEYLQLVLTWPASFCYANHCERIAPNNFTIHGLWPDNVKTRLHNCKPKPTYSYFTGKMLN 61
Query: 66 DLMRYWLPLN-ENNLSRAEN-FWIYQWKKHGSAAKEFIQPRDYFQMALQLAKDTDLRNTL 123
DL ++W+ L E + R E W YQ+ KHGS ++ YF +AL+L DL TL
Sbjct: 62 DLDKHWMQLKFEQDYGRTEQPSWKYQYIKHGSCCQKRYNQNTYFGLALRLKDKFDLLRTL 121
Query: 124 QNHGAVPILPDGGSYNKRDYKAAIKNKTGHDPLLKCVKGDDGISHLKEVIICVDDQAQSF 183
Q H +P G SY +D AIK + +P +KC + G L E+ IC A S
Sbjct: 122 QTHRIIP----GSSYTFQDIFDAIKTVSQENPDIKCAEVTKGTPELYEIGICFTPNADSM 177
Query: 184 IQCAKQKDRC 193
+C Q D C
Sbjct: 178 FRCP-QSDTC 186
>pdb|1DIX|A Chain A, Crystal Structure Of Rnase Le
Length = 208
Score = 93.2 bits (230), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 90/192 (46%), Gaps = 29/192 (15%)
Query: 20 SSGFDHFWLVQVWPSGYC--LQANCSQTSDR----FIIHGLWAVNVVDKTLPDLMRYWLP 73
S FD F+ VQ WP YC Q+ C T+ + F IHGLW N D T P P
Sbjct: 4 SKDFDFFYFVQQWPGSYCDTKQSCCYPTTGKPAADFGIHGLWPNNN-DGTYPSNCDPNSP 62
Query: 74 LNENNLS------------------RAENFWIYQWKKHGSAAKEFIQPRD-YFQMALQLA 114
+++ +S FW ++W+KHG+ A+ + + YF+ AL L
Sbjct: 63 YDQSQISDLISSMQQNWPTLACPSGSGSTFWSHEWEKHGTCAESVLTNQHAYFKKALDLK 122
Query: 115 KDTDLRNTLQNHGAVPILPDGGSYNKRDYKAAIKNKTGHDPLLKCVKGDDGISHLKEVII 174
DL + LQ I PDG SY+ + + AIK+ G+ P ++C G S L +V I
Sbjct: 123 NQIDLLSILQ---GADIHPDGESYDLVNIRNAIKSAIGYTPWIQCNVDQSGNSQLYQVYI 179
Query: 175 CVDDQAQSFIQC 186
CVD S I+C
Sbjct: 180 CVDGSGSSLIEC 191
>pdb|1IYB|A Chain A, Crystal Structure Of The Nicotiana Glutinosa Ribonuclease
Nw
pdb|1IYB|B Chain B, Crystal Structure Of The Nicotiana Glutinosa Ribonuclease
Nw
Length = 208
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 91/202 (45%), Gaps = 29/202 (14%)
Query: 23 FDHFWLVQVWPSGYC--LQANC----SQTSDRFIIHGLWAVNVVDKTLPDLMRYWLPLNE 76
FD F+ VQ WP YC Q+ C + + F IHGLW N D + P P ++
Sbjct: 8 FDFFYFVQQWPGSYCDTKQSCCYPKTGKPASDFGIHGLWPNNN-DGSYPSNCDSNSPYDQ 66
Query: 77 NNLS------------------RAENFWIYQWKKHGSAAKEFIQPRDYFQMALQLAKDTD 118
+ +S FW ++W+KHG+ A+ YF+ AL L +
Sbjct: 67 SQVSDLISRMQQNWPTLACPSGTGSAFWSHEWEKHGTCAENVFDQHGYFKKALDLKNQIN 126
Query: 119 LRNTLQNHGAVPILPDGGSYNKRDYKAAIKNKTGHDPLLKCVKGDDGISHLKEVIICVDD 178
L LQ G I PDGG Y+ K AI++ G+ P ++C + G S L ++ ICVD
Sbjct: 127 LLEILQGAG---IHPDGGFYSLNSIKNAIRSAIGYAPGIECNVDESGNSQLYQIYICVDG 183
Query: 179 QAQSFIQCAK-QKDRCYFDIMF 199
+ I+C + +C I F
Sbjct: 184 SGSNLIECPIFPRGKCGSSIEF 205
>pdb|1VCZ|A Chain A, Crystal Structure Of The Rnase Nt In Complex With 5'-Gmp
pdb|1VD1|A Chain A, Crystal Structure Of Rnase Nt In Complex With 5'-Amp
pdb|1VD3|A Chain A, Ribonuclease Nt In Complex With 2'-ump
Length = 217
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 82/188 (43%), Gaps = 29/188 (15%)
Query: 23 FDHFWLVQVWPSGYC--LQANCSQTSDR----FIIHGLWAVNVVDKTLPDLMRYWLPLNE 76
FD F+ VQ WP+ YC ++ C T+ + F IHGLW N + P L+E
Sbjct: 8 FDFFYFVQQWPASYCDTRRSCCYPTTGKPDEDFSIHGLWP-NYENGKWPQNCDRESSLDE 66
Query: 77 NNLSR------------------AENFWIYQWKKHGSAAKEFIQPRDYFQMALQLAKDTD 118
+ +S FW ++W KHG+ + + R YFQ AL K ++
Sbjct: 67 SEISDLISTMEKNWPSLACPSSDGVRFWSHEWLKHGTCSA--LGERAYFQAALDFRKKSN 124
Query: 119 LRNTLQNHGAVPILPDGGSYNKRDYKAAIKNKTGHDPLLKCVKGDDGISHLKEVIICVDD 178
L L+N P +G Y K AI+ GH P ++C G + +V +CVD
Sbjct: 125 LLENLKNAEITPR--NGEHYTLESIKKAIEEGVGHSPYIECNVDTQGNHQIYQVYLCVDK 182
Query: 179 QAQSFIQC 186
A FI C
Sbjct: 183 TATDFIDC 190
>pdb|1J1F|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant N71t In Complex
With 5'-Gmp
Length = 191
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 85/199 (42%), Gaps = 31/199 (15%)
Query: 23 FDHFWLVQVWPSGYCL---QANCSQTSDR-FIIHGLWA----------------VNVVDK 62
FD FW VQ WP C +C + R F IHGLW + +
Sbjct: 2 FDSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQQSGTSLTNCPGSPFDITKISH 61
Query: 63 TLPDLMRYW-LPLNENNLSRAENFWIYQWKKHGSAAKEFIQPRDYFQMALQLAKDTDLRN 121
L W L NN + FW ++W KHG+ ++ YF++A+ + + D+
Sbjct: 62 LQSQLNTLWPTVLRANN----QQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIG 117
Query: 122 TLQNHGAVPILPDGGSYNKRDYKAAIKNKTGHDPLLKC-VKGDDGISHLKEVIICVDDQA 180
L+ H A P+G + +++ K +K K G P L+C +S+L EV+ C
Sbjct: 118 ALRPHAAG---PNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVEVVACFAQDG 174
Query: 181 QSFIQCAKQKDRCYFDIMF 199
+ I C +D C + +F
Sbjct: 175 STLIDCT--RDTCGANFIF 191
>pdb|1BK7|A Chain A, Ribonuclease Mc1 From The Seeds Of Bitter Gourd
pdb|1UCA|A Chain A, Crystal Structure Of The Ribonuclease Mc1 From Bitter
Gourd Seeds Complexed With 2'-Ump
pdb|1UCC|A Chain A, Crystal Structure Of The Ribonuclease Mc1 From Bitter
Gourd Seeds Complexed With 3'-Ump.
pdb|1UCD|A Chain A, Crystal Structure Of Ribonuclease Mc1 From Bitter Gourd
Seeds Complexed With 5'-Ump
Length = 190
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 88/195 (45%), Gaps = 23/195 (11%)
Query: 23 FDHFWLVQVWPSGYCL---QANCSQTSDR-FIIHGLWAV-----------NVVDKTLPDL 67
FD FW VQ WP C +C + R F IHGLW + D T
Sbjct: 1 FDSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQQSGTSLTNCPGSPFDITKISH 60
Query: 68 MRYWLPLNENNLSRAEN--FWIYQWKKHGSAAKEFIQPRDYFQMALQLAKDTDLRNTLQN 125
++ L N+ RA N FW ++W KHG+ ++ YF++A+ + + D+ L+
Sbjct: 61 LQSQLNTLWPNVLRANNQQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGALRP 120
Query: 126 HGAVPILPDGGSYNKRDYKAAIKNKTGHDPLLKC-VKGDDGISHLKEVIICVDDQAQSFI 184
H A P+G + +++ K +K K G P L+C +S+L +V+ C + I
Sbjct: 121 HAAG---PNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVQVVACFAQDGSTLI 177
Query: 185 QCAKQKDRCYFDIMF 199
C +D C + +F
Sbjct: 178 DCT--RDTCGANFIF 190
>pdb|1V9H|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant Y101a In Complex
With 5'-Ump
Length = 197
Score = 77.0 bits (188), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 87/195 (44%), Gaps = 23/195 (11%)
Query: 23 FDHFWLVQVWPSGYCL---QANCSQTSDR-FIIHGLWAV-----------NVVDKTLPDL 67
FD FW VQ WP C +C + R F IHGLW + D T
Sbjct: 8 FDSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQQSGTSLTNCPGSPFDITKISH 67
Query: 68 MRYWLPLNENNLSRAEN--FWIYQWKKHGSAAKEFIQPRDYFQMALQLAKDTDLRNTLQN 125
++ L N+ RA N FW ++W KHG+ ++ F++A+ + + D+ L+
Sbjct: 68 LQSQLNTLWPNVLRANNQQFWSHEWTKHGTCSESTFNQAAAFKLAVDMRNNYDIIGALRP 127
Query: 126 HGAVPILPDGGSYNKRDYKAAIKNKTGHDPLLKC-VKGDDGISHLKEVIICVDDQAQSFI 184
H A P+G + +++ K +K K G P L+C +S+L EV+ C + I
Sbjct: 128 HAAG---PNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVEVVACFAQDGSTLI 184
Query: 185 QCAKQKDRCYFDIMF 199
C +D C + +F
Sbjct: 185 DCT--RDTCGANFIF 197
>pdb|1J1G|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant N71s In Complex
With 5'-Gmp
Length = 190
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 31/198 (15%)
Query: 24 DHFWLVQVWPSGYCL---QANCSQTSDR-FIIHGLWA----------------VNVVDKT 63
D FW VQ WP C +C + R F IHGLW + +
Sbjct: 2 DSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQQSGTSLTNCPGSPFDITKISHL 61
Query: 64 LPDLMRYWLP-LNENNLSRAENFWIYQWKKHGSAAKEFIQPRDYFQMALQLAKDTDLRNT 122
L W L NN + FW ++W KHG+ ++ YF++A+ + + D+
Sbjct: 62 QSQLNTLWPSVLRANN----QQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGA 117
Query: 123 LQNHGAVPILPDGGSYNKRDYKAAIKNKTGHDPLLKC-VKGDDGISHLKEVIICVDDQAQ 181
L+ H A P+G + +++ K +K K G P L+C +S+L EV+ C
Sbjct: 118 LRPHAAG---PNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVEVVACFAQDGS 174
Query: 182 SFIQCAKQKDRCYFDIMF 199
+ I C +D C + +F
Sbjct: 175 TLIDCT--RDTCGANFIF 190
>pdb|1UCG|A Chain A, Crystal Structure Of Ribonuclease Mc1 N71t Mutant
pdb|1UCG|B Chain B, Crystal Structure Of Ribonuclease Mc1 N71t Mutant
Length = 190
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 31/198 (15%)
Query: 24 DHFWLVQVWPSGYCL---QANCSQTSDR-FIIHGLWA----------------VNVVDKT 63
D FW VQ WP C +C + R F IHGLW + +
Sbjct: 2 DSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQQSGTSLTNCPGSPFDITKISHL 61
Query: 64 LPDLMRYW-LPLNENNLSRAENFWIYQWKKHGSAAKEFIQPRDYFQMALQLAKDTDLRNT 122
L W L NN + FW ++W KHG+ ++ YF++A+ + + D+
Sbjct: 62 QSQLNTLWPTVLRANN----QQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGA 117
Query: 123 LQNHGAVPILPDGGSYNKRDYKAAIKNKTGHDPLLKC-VKGDDGISHLKEVIICVDDQAQ 181
L+ H A P+G + +++ K +K K G P L+C +S+L +V+ C
Sbjct: 118 LRPHAAG---PNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVQVVACFAQDGS 174
Query: 182 SFIQCAKQKDRCYFDIMF 199
+ I C +D C + +F
Sbjct: 175 TLIDCT--RDTCGANFIF 190
>pdb|3T0O|A Chain A, Crystal Structure Analysis Of Human Rnase T2
Length = 238
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 24/190 (12%)
Query: 19 DSSGFDHFWLVQVWPSGYC--LQANCSQTSDRFIIHGLWA-------------VNVVDKT 63
D+ + +VQ WP C +Q +C D + IHGLW + +
Sbjct: 6 DNHEWKKLIMVQHWPETVCEKIQNDCRDPPDYWTIHGLWPDKSEGCNRSWPFNLEEIKDL 65
Query: 64 LPDLMRYWLPLNENNLSRAENFWIYQWKKHGSAAKE---FIQPRDYFQMALQLAKDTDLR 120
LP++ YW P ++ FW ++W+KHG+ A + + YF +L+L ++ DL
Sbjct: 66 LPEMRAYW-PDVIHSFPNRSRFWKHEWEKHGTCAAQVDALNSQKKYFGRSLELYRELDLN 124
Query: 121 NTLQNHGAVPILPDGGSYNKRDYKAAIKNKTGHDPLLKCV--KGDDGISHLKEVIICVDD 178
+ L G I P Y D+K A+ G P ++C+ D+ + + ++ +C+
Sbjct: 125 SVLLKLG---IKPSINYYQVADFKDALARVYGVIPKIQCLPPSQDEEVQTIGQIELCLTK 181
Query: 179 QAQSFIQCAK 188
Q Q C +
Sbjct: 182 QDQQLQNCTE 191
>pdb|1IQQ|A Chain A, Crystal Structure Of Japanese Pear S3-Rnase
Length = 200
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 23/184 (12%)
Query: 23 FDHFWLVQVWPSGYCLQAN--CSQTSDR-FIIHGLWAVNVVD-----------KTLPDLM 68
+D+F Q + C C D+ F +HGLW N+V + L+
Sbjct: 1 YDYFQFTQQYQLAVCNSNRTLCKDPPDKLFTVHGLWPSNMVGPDPSKCPIKNIRKREKLL 60
Query: 69 RYWLPLN-ENNLSRAEN--FWIYQWKKHGSAAKEFIQPRD-YFQMALQL--AKDTDLRNT 122
+ L + N R +N FW +W KHGS I + YF+ +++ +K ++
Sbjct: 61 EHQLEIIWPNVFDRTKNNLFWDKEWMKHGSCGYPTIDNENHYFETVIKMYISKKQNVSRI 120
Query: 123 LQNHGAVPILPDGGSYNKRDYKAAIKNKTGHDPLLKCVKGDDGISHLKEVIICVDDQAQS 182
L I PDG D + AI+N + + + L E+ +C D +
Sbjct: 121 L---SKAKIEPDGKKRALLDIENAIRNGADNKKPKLKCQKKGTTTELVEITLCSDKSGEH 177
Query: 183 FIQC 186
FI C
Sbjct: 178 FIDC 181
>pdb|1BOL|A Chain A, The Crystal Structure Of Ribonuclease Rh From Rhizopus
Niveus At 2.0 A Resolution
Length = 222
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 24/152 (15%)
Query: 26 FWLVQVWP----SGYCLQANCSQTSDRFIIHGLWAVNVVDKTLPDLMRYWLPLNENNLSR 81
F L +WP Y C I + + D +L + M + P N+ N +
Sbjct: 43 FTLHGLWPDKCSGAYAPSGGCDSNRASSSIASV--IKSKDSSLYNSMLTYWPSNQGNNNV 100
Query: 82 AENFWIYQWKKHGSAA-----------KEFIQPRDYFQMALQLAKDTDLRNTLQNHGAVP 130
FW ++W KHG+ +E DYFQ A+ L ++ ++G P
Sbjct: 101 ---FWSHEWSKHGTCVSTYDPDCYDNYEEGEDIVDYFQKAMDLRSQYNVYKAFSSNGITP 157
Query: 131 ILPDGGSYNKRDYKAAIKNKTGHDPLLKCVKG 162
GG+Y + ++AI++ G + C G
Sbjct: 158 ----GGTYTATEMQSAIESYFGAKAKIDCSSG 185
>pdb|3TBJ|A Chain A, The 1.7a Crystal Structure Of Actibind A T2 Ribonucleases
As Antitumorigenic Agents
Length = 237
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 57/154 (37%), Gaps = 41/154 (26%)
Query: 46 SDRFIIHGLWAVNV-------VDKT-----------------LPDLMRYWLPLNENNLSR 81
SD + IHGLW N D++ L M+ + P E
Sbjct: 45 SDSWTIHGLWPDNCDGTYQEYCDESREYSNITSILEAQNRTELLSYMKEYWPDYEG-ADE 103
Query: 82 AENFWIYQWKKHGSAAKEFIQPR------------DYFQMALQLAKDTDLRNTLQNHGAV 129
E+FW ++W KHG+ I+P D+FQ + L K D L + G
Sbjct: 104 DESFWEHEWNKHGTCINT-IEPSCYTDYYAQEEVGDFFQQVVDLFKTLDSYTALSDAGIT 162
Query: 130 PILPDGGSYNKRDYKAAIKN-KTGHDPLLKCVKG 162
P + +Y D + A+ G+ P + C G
Sbjct: 163 P--SEDATYKLSDIEDALAAIHDGYPPYVGCEDG 194
>pdb|3D3Z|A Chain A, Crystal Structure Of Actibind A T2 Rnase
Length = 247
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 57/154 (37%), Gaps = 41/154 (26%)
Query: 46 SDRFIIHGLWAVNV-------VDKT-----------------LPDLMRYWLPLNENNLSR 81
SD + IHGLW N D++ L M+ + P E
Sbjct: 45 SDSWTIHGLWPDNCDGTYQEYCDESREYSNITSILEAQNRTELLSYMKEYWPDYEG-ADE 103
Query: 82 AENFWIYQWKKHGSAAKEFIQPR------------DYFQMALQLAKDTDLRNTLQNHGAV 129
E+FW ++W KHG+ I+P D+FQ + L K D L + G
Sbjct: 104 DESFWEHEWNKHGTCINT-IEPSCYTDYYAQEEVGDFFQQVVDLFKTLDSYTALSDAGIT 162
Query: 130 PILPDGGSYNKRDYKAAIKN-KTGHDPLLKCVKG 162
P + +Y D + A+ G+ P + C G
Sbjct: 163 P--SEDATYKLSDIEDALAAIHDGYPPYVGCEDG 194
>pdb|3O8O|B Chain B, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|D Chain D, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|F Chain F, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|H Chain H, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 766
Score = 34.7 bits (78), Expect = 0.036, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 7/97 (7%)
Query: 35 GYCLQANCSQTSDRFI--IHGLWAVNVVDKTLPDLMRYWLPLNENNLSRAENFWIYQWKK 92
G+ + + DR + + GL AVN V ++ PD + +NEN + R + + K
Sbjct: 287 GHVQRGGTAVAYDRILATLQGLEAVNAVLESTPDTPSPLIAVNENKIVRKP---LMESVK 343
Query: 93 HGSAAKEFIQPRDYFQMALQLAKDTDLRNTLQNHGAV 129
A E IQ +D F+ A+ L +DT+ L N A+
Sbjct: 344 LTKAVAEAIQAKD-FKRAMSL-RDTEFIEHLNNFMAI 378
>pdb|3H3D|X Chain X, Drosophila Pumilio Rna Binding Domain (Puf Domain)
pdb|3H3D|Y Chain Y, Drosophila Pumilio Rna Binding Domain (Puf Domain)
Length = 323
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 99 EFIQPRDYFQMALQLAKDTDLRNTLQNHGAVPILPDGGSYNKRDYKAAIKNKTGHDPLLK 158
EF P + +Q+ K L+ LQ +G I S + + + GH +LK
Sbjct: 82 EFGTPEQKNTLGMQV-KGHVLQLALQMYGCRVIQKALESISPEQQQEIVHELDGH--VLK 138
Query: 159 CVKGDDGISHLKEVIICVDDQAQSFI 184
CVK +G +++ I CVD A FI
Sbjct: 139 CVKDQNGNHVVQKCIECVDPVALQFI 164
>pdb|2PQY|A Chain A, E. Coli Rnase 1 (in Vitro Refolded With Dsba Only)
pdb|2PQX|A Chain A, E. Coli Rnase 1 (In Vivo Folded)
pdb|2EA1|A Chain A, Crystal Structure Of Ribonuclease I From Escherichia
Coli Complexed With
Guanylyl-2(Prime),5(Prime)-Guanosine
pdb|2Z70|A Chain A, E.Coli Rnase 1 In Complex With D(Cgcgatcgcg)
Length = 245
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 15/48 (31%)
Query: 23 FDHFWLVQVWPSGYC---------------LQANCSQTSDRFIIHGLW 55
FD + L W +G+C LQ + +D +HGLW
Sbjct: 11 FDRYVLALSWQTGFCQSQHDRNRNERDECRLQTETTNKADFLTVHGLW 58
>pdb|1VB3|A Chain A, Crystal Structure Of Threonine Synthase From Escherichia
Coli
Length = 428
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 36 YCLQANCSQTSDRFIIHGLWAVNVVDKTLPDLMRYWLPLNENNLSRAENFW---IYQWKK 92
+ N + T RF+ G W+ TL + M P NN R E + I+Q K+
Sbjct: 269 FIAATNVNDTVPRFLHDGQWSPKATQATLSNAMDVSQP---NNWPRVEELFRRKIWQLKE 325
Query: 93 HGSAA 97
G AA
Sbjct: 326 LGYAA 330
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 163 DDGISHLKEVIICVDDQAQSFIQCAKQKDRCYFD 196
D I+HL + +C+DD + S C + RC++D
Sbjct: 74 DRNITHL-QYCVCIDDCSSSNCMCGQLSMRCWYD 106
>pdb|4I51|A Chain A, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
pdb|4I51|B Chain B, Methyltransferase Domain Of Human Euchromatic Histone
Methyltransferase 1, Mutant Y1211a
Length = 286
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 163 DDGISHLKEVIICVDDQAQSFIQCAKQKDRCYFD 196
D I+HL + +C+DD + S C + RC++D
Sbjct: 73 DRNITHL-QYCVCIDDCSSSNCMCGQLSMRCWYD 105
>pdb|3GVO|A Chain A, Structure And Rna Binding Of The Mouse Pumilio-2 Puf
Domain
pdb|3GVT|A Chain A, Structure And Rna Binding Of The Mouse Pumilio-2 Puf
Domain
pdb|3GVT|B Chain B, Structure And Rna Binding Of The Mouse Pumilio-2 Puf
Domain
Length = 351
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 112 QLAKDTDLRN-----TLQNHGAVPILPDGGSYNKRDYKAAIKNKTGHDPLLKCVKGDDGI 166
+LA T +R LQ +G I S + +K GH +LKCVK +G
Sbjct: 89 KLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGH--VLKCVKDQNGN 146
Query: 167 SHLKEVIICVDDQAQSFI 184
+++ I CV Q+ FI
Sbjct: 147 HVVQKCIECVQPQSLQFI 164
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 163 DDGISHLKEVIICVDDQAQSFIQCAKQKDRCYFD 196
D I+HL + +C+DD + S C + RC++D
Sbjct: 72 DRNITHL-QYCVCIDDCSSSNCMCGQLSMRCWYD 104
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 163 DDGISHLKEVIICVDDQAQSFIQCAKQKDRCYFD 196
D I+HL + +C+DD + S C + RC++D
Sbjct: 48 DRNITHL-QYCVCIDDCSSSNCMCGQLSMRCWYD 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,317,279
Number of Sequences: 62578
Number of extensions: 258418
Number of successful extensions: 803
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 759
Number of HSP's gapped (non-prelim): 30
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)