Query 042583
Match_columns 206
No_of_seqs 166 out of 1237
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 07:36:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01061 RNase_T2_euk Ribonucle 100.0 1.8E-52 3.9E-57 343.8 17.9 171 23-199 1-195 (195)
2 KOG1642 Ribonuclease, T2 famil 100.0 1.9E-52 4.1E-57 347.8 15.7 182 19-203 28-241 (263)
3 cd00374 RNase_T2 Ribonuclease 100.0 5E-52 1.1E-56 340.0 16.6 171 23-199 1-195 (195)
4 PF00445 Ribonuclease_T2: Ribo 100.0 7.6E-52 1.6E-56 338.2 11.6 161 23-188 1-189 (189)
5 cd01062 RNase_T2_prok Ribonucl 100.0 2.4E-45 5.2E-50 299.0 12.8 150 23-195 1-179 (184)
6 PRK10095 ribonuclease I; Provi 100.0 8.1E-41 1.7E-45 285.6 14.9 166 19-202 30-266 (268)
7 COG3719 Rna Ribonuclease I [Tr 100.0 2.7E-38 5.9E-43 262.5 12.3 161 22-197 52-242 (249)
8 PF01328 Peroxidase_2: Peroxid 69.7 4.2 9E-05 36.1 2.8 40 115-156 48-87 (317)
9 PF10281 Ish1: Putative stress 62.4 14 0.0003 22.0 3.3 30 118-150 8-37 (38)
10 PF08255 Leader_Trp: Trp-opero 59.5 6 0.00013 18.7 1.0 10 47-56 3-12 (14)
11 cd00524 SORL Superoxide reduct 47.0 7.3 0.00016 27.5 0.3 6 50-55 80-85 (86)
12 cd03171 SORL_Dfx_classI Supero 46.5 7.3 0.00016 27.3 0.2 6 50-55 72-77 (78)
13 TIGR03853 matur_matur probable 42.8 41 0.00089 23.6 3.5 27 135-161 15-42 (77)
14 cd03172 SORL_classII Superoxid 41.4 9.7 0.00021 28.1 0.2 8 50-57 95-102 (104)
15 TIGR00332 neela_ferrous desulf 40.6 9.6 0.00021 28.3 0.1 8 50-57 93-100 (107)
16 PF08368 FAST_2: FAST kinase-l 39.9 1E+02 0.0022 21.8 5.5 42 139-181 49-90 (93)
17 TIGR03595 Obg_CgtA_exten Obg f 36.1 31 0.00067 23.4 2.1 32 102-140 31-62 (69)
18 COG2033 Desulfoferrodoxin [Ene 35.2 16 0.00035 27.9 0.6 8 50-57 114-121 (126)
19 PF10678 DUF2492: Protein of u 34.7 58 0.0013 22.9 3.3 28 135-162 17-45 (78)
20 PF01880 Desulfoferrodox: Desu 34.5 12 0.00026 27.2 -0.2 8 50-57 88-95 (96)
21 PF07172 GRP: Glycine rich pro 34.1 25 0.00055 25.6 1.5 9 1-9 1-9 (95)
22 TIGR00320 dfx_rbo desulfoferro 32.4 16 0.00035 27.9 0.2 7 50-56 117-123 (125)
23 PF09269 DUF1967: Domain of un 31.8 66 0.0014 21.8 3.2 32 102-140 31-62 (69)
24 PF00446 GnRH: Gonadotropin-re 31.6 14 0.0003 15.9 -0.2 6 86-91 3-8 (10)
25 PF08766 DEK_C: DEK C terminal 27.3 73 0.0016 20.3 2.6 29 119-154 9-37 (54)
26 PF08139 LPAM_1: Prokaryotic m 26.6 48 0.001 18.2 1.4 12 6-17 10-21 (25)
27 cd07885 RHD-n_RelA N-terminal 25.0 31 0.00067 27.9 0.6 73 84-179 71-146 (169)
28 cd07884 RHD-n_Relish N-termina 23.3 47 0.001 26.6 1.3 29 137-179 107-135 (159)
29 cd07886 RHD-n_RelB N-terminal 21.7 80 0.0017 25.6 2.4 75 84-179 73-149 (172)
30 PF02861 Clp_N: Clp amino term 21.7 1.3E+02 0.0028 18.2 3.0 25 118-152 29-53 (53)
31 PF08100 Dimerisation: Dimeris 20.1 1E+02 0.0022 19.7 2.2 32 110-148 2-33 (51)
No 1
>cd01061 RNase_T2_euk Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. Generally, RNases have two distinct binding sites: the primary site (B1 site) and the subsite (B2 site), for nucleotides located at the 5'- and 3'- terminal ends of the sessil bond, respectively. This CD includes the eukaryotic RNase T2 family members.
Probab=100.00 E-value=1.8e-52 Score=343.83 Aligned_cols=171 Identities=37% Similarity=0.753 Sum_probs=149.1
Q ss_pred ccEEEEEEecccccccCCC--CCCC-CCCcEEeeeecccc------------------CCCcchhhhcccCcCcCCCchh
Q 042583 23 FDHFWLVQVWPSGYCLQAN--CSQT-SDRFIIHGLWAVNV------------------VDKTLPDLMRYWLPLNENNLSR 81 (206)
Q Consensus 23 fD~~~l~l~W~p~~C~~~~--C~~p-~~~ftIHGLWP~~~------------------~~~l~~~L~~~Wp~l~~~~~~~ 81 (206)
||||+||++|||+||..+. |..+ ..+||||||||++. ++++.++|+.+||++...+.+
T Consensus 1 ~d~~~l~~~Wpps~C~~~~~~c~~~~~~~ftiHGLWP~~~~g~~p~~C~~~~~~~~~~~~~l~~~L~~~Wp~l~~~~~~- 79 (195)
T cd01061 1 FDYLQLVLQWPDTYCSTGPCCCRPPPPDSFTIHGLWPDNCSGTYPQFCDSSSNFDSILISDLLNELNKYWPDLTGPKNN- 79 (195)
T ss_pred CCeEEEEEECCCCcccCCCCcCCCCCcccCEEeccCCCCCCCCCCCCCCCcccCCcccchhhhHHHhccCCCCcCCCCc-
Confidence 7999999999999998765 7443 89999999999875 236888999999999876411
Q ss_pred hHhHHhhhccceeecccC-CCCHHHHHHHHHHHHHhCChHHHHhhCCCCCCCCCCCcccHHHHHHHHHHhhCCCceEEee
Q 042583 82 AENFWIYQWKKHGSAAKE-FIQPRDYFQMALQLAKDTDLRNTLQNHGAVPILPDGGSYNKRDYKAAIKNKTGHDPLLKCV 160 (206)
Q Consensus 82 ~~~fW~hEW~KHGtCs~~-~~~~~~YF~~al~l~~~~~i~~~L~~~gI~Ps~~~~~~y~~~~i~~ai~~~~g~~p~l~C~ 160 (206)
. .||+|||+|||||++. ..++.+||.+|++|++++|+.++|+++||+| +++.|++++|++||++++|.+|.|+|.
T Consensus 80 ~-~fw~hEW~KHGTC~~~~~~~~~~YF~~a~~l~~~~~~~~~L~~~~I~P---~~~~~~~~~i~~ai~~~~g~~~~l~C~ 155 (195)
T cd01061 80 Q-SFWEHEWNKHGTCSSTLLYNQYDYFDTALKLKDKLDLLKILAKAGIVP---STQTYTLSDIQNAIKAATGVTPVIKCS 155 (195)
T ss_pred c-hHHHHHHhhCcEeCCCcccCHHHHHHHHHHHHHHCCHHHHHHHCCcCC---CCcEEcHHHHHHHHHHHHCCCcEEEeC
Confidence 2 8999999999999985 4699999999999999999999999999999 368999999999999999999999998
Q ss_pred eCCCCCCcEEEEEEEEecCCCceecCCCCCCC-CC-CceEe
Q 042583 161 KGDDGISHLKEVIICVDDQAQSFIQCAKQKDR-CY-FDIMF 199 (206)
Q Consensus 161 ~~~~~~~~L~Ev~iC~~~~~~~~i~Cp~~~~~-C~-~~i~~ 199 (206)
+++ +.++|.||+||+|+++..+++||..... || ++|+|
T Consensus 156 ~~~-~~~~L~Ev~iC~~k~~~~~~~C~~~~~~~C~~~~i~f 195 (195)
T cd01061 156 KDP-GKGELNEIWICFDKKGGEFIDCPRPPKSTCPDDGIKF 195 (195)
T ss_pred cCC-CCcEEEEEEEEEECCCCeEeeCCCCCCCCCCCCceEC
Confidence 854 4589999999999995459999987433 99 57775
No 2
>KOG1642 consensus Ribonuclease, T2 family [RNA processing and modification]
Probab=100.00 E-value=1.9e-52 Score=347.79 Aligned_cols=182 Identities=30% Similarity=0.603 Sum_probs=157.6
Q ss_pred CCCCccEEEEEEecccccccCCC--CCCC---CCCcEEeeeecccc------------------CCCcchhhhcccCcCc
Q 042583 19 DSSGFDHFWLVQVWPSGYCLQAN--CSQT---SDRFIIHGLWAVNV------------------VDKTLPDLMRYWLPLN 75 (206)
Q Consensus 19 ~~~~fD~~~l~l~W~p~~C~~~~--C~~p---~~~ftIHGLWP~~~------------------~~~l~~~L~~~Wp~l~ 75 (206)
...+||||+|+|+||.++|...+ |..| ...||||||||++. +.+++.+|+++||+|.
T Consensus 28 ~~~~fd~f~fvqqWP~~~Cd~~~~~C~~~~G~~a~ftIHGLWP~~~~G~~P~~Cn~s~~Fd~~~isdl~~~L~~~Wp~L~ 107 (263)
T KOG1642|consen 28 SEEDFDFFYFVQQWPGAYCDSQRTCCYPPSGKPADFTIHGLWPDYNHGSWPQNCNRSSQFDDSKISDLEDSLEKEWPDLY 107 (263)
T ss_pred ccCCCCEEEEEEecCCccccCCccccCCCCCCccceEEeeeccCCCCCCCcccCCCcccCChHHccchhhhHHhhccccc
Confidence 34799999999999999997665 8776 34999999999986 6788999999999999
Q ss_pred CCCchh-hHhHHhhhccceeecccCCC---CHHHHHHHHHHHHHhCChHHHHhhCCCCCCCCCCCcccHHHHHHHHHHhh
Q 042583 76 ENNLSR-AENFWIYQWKKHGSAAKEFI---QPRDYFQMALQLAKDTDLRNTLQNHGAVPILPDGGSYNKRDYKAAIKNKT 151 (206)
Q Consensus 76 ~~~~~~-~~~fW~hEW~KHGtCs~~~~---~~~~YF~~al~l~~~~~i~~~L~~~gI~Ps~~~~~~y~~~~i~~ai~~~~ 151 (206)
.+.+++ .++||+|||+|||||+.+++ +|.+||.++++|++++|+..+|.++||.| ++..|++++|++||++++
T Consensus 108 ~~s~n~g~~~fW~HEweKHGTCa~sv~~~~dq~~YF~~~L~l~~k~~l~~~L~~~gI~p---~~~~y~l~~I~nAi~~~~ 184 (263)
T KOG1642|consen 108 CPSPNGGHESFWKHEWEKHGTCASSVFPLCDQHKYFETTLKLKQKLDLLSILKKAGIKP---DDNFYSLADIKNAIKEAI 184 (263)
T ss_pred cCCCCCccchhhhhhhhccCchhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHcCCCC---CCCceeHHHHHHHHHHHh
Confidence 876433 22899999999999999877 99999999999999999999999999999 599999999999999999
Q ss_pred CCCceEEeeeCCCCC-CcEEEEEEEEecCCC--ceecCCCC-CC-CCCCceEecCCC
Q 042583 152 GHDPLLKCVKGDDGI-SHLKEVIICVDDQAQ--SFIQCAKQ-KD-RCYFDIMFDVPP 203 (206)
Q Consensus 152 g~~p~l~C~~~~~~~-~~L~Ev~iC~~~~~~--~~i~Cp~~-~~-~C~~~i~~P~~~ 203 (206)
|.+|.+.|.++.+++ .+|.|||+||.|+.. ..+.||.. .+ .|++.+.||.+.
T Consensus 185 G~~p~I~C~rd~~~nv~~l~qI~lCl~kd~~~~d~~~~~~~~P~g~~~~~~~~ps~~ 241 (263)
T KOG1642|consen 185 GKTPGIECLRDSKHNVSQLGQIRLCLLKDFSPRDCIECPTEFPRGSCPTFIQFPSFG 241 (263)
T ss_pred CCCCceEeccCcccCceEeeeEEEEeecCcccccccCCCCcccCCcccccccCCCCC
Confidence 999999999987766 799999999977765 33445522 23 399999998865
No 3
>cd00374 RNase_T2 Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen.
Probab=100.00 E-value=5e-52 Score=340.02 Aligned_cols=171 Identities=37% Similarity=0.731 Sum_probs=150.2
Q ss_pred ccEEEEEEecccccccCCC--CCC--CCCCcEEeeeecccc------------------CCCcchhhhcccCcCcCCCch
Q 042583 23 FDHFWLVQVWPSGYCLQAN--CSQ--TSDRFIIHGLWAVNV------------------VDKTLPDLMRYWLPLNENNLS 80 (206)
Q Consensus 23 fD~~~l~l~W~p~~C~~~~--C~~--p~~~ftIHGLWP~~~------------------~~~l~~~L~~~Wp~l~~~~~~ 80 (206)
||||+|||+|||+||.... |.. +..+||||||||++. +.++.++|.++||++..+..
T Consensus 1 ~d~~~l~l~W~p~~C~~~~~~~~~~~~~~~ftiHGLWP~~~~g~~p~~C~~~~~~~~~~~~~l~~~l~~~w~~~~~~~~- 79 (195)
T cd00374 1 FDYYVLVLQWPPTFCATGPCKCCGTPPPDSFTIHGLWPDNCDGTYPQFCDSSSFFDKSKDSDLLDELNKYWPDLMPGKD- 79 (195)
T ss_pred CCeEEEEEeCcCCcccCCCCCCCCCCchHHeeEccccCCCCCCCCCCCCCCCccccccccHHHHHHHHhhCcccCCCCC-
Confidence 7999999999999998765 422 378999999999874 13578899999999987632
Q ss_pred hhHhHHhhhccceeecccCCCCHHHHHHHHHHHHHhCChHHHHhhCCCCCCCCCCCcccHHHHHHHHHHhhCCCceEEee
Q 042583 81 RAENFWIYQWKKHGSAAKEFIQPRDYFQMALQLAKDTDLRNTLQNHGAVPILPDGGSYNKRDYKAAIKNKTGHDPLLKCV 160 (206)
Q Consensus 81 ~~~~fW~hEW~KHGtCs~~~~~~~~YF~~al~l~~~~~i~~~L~~~gI~Ps~~~~~~y~~~~i~~ai~~~~g~~p~l~C~ 160 (206)
. .||+|||+|||||+++..++.+||++|++|++++|+.++|+.+||+|+ +++.|+.++|++||++++|.+|.|+|.
T Consensus 80 -~-~fw~hEW~KHGTC~~~~~~~~~YF~~a~~l~~~~ni~~~L~~~~i~p~--~~~~~~~~~i~~ai~~~~g~~~~l~C~ 155 (195)
T cd00374 80 -S-SFWKHEWNKHGTCSGTLLDQDDYFRTALKLLDKLDLLSILAKAGIKPS--DGSTYTLAFIQNAIKAATGATPSLKCT 155 (195)
T ss_pred -c-hHHHHHHhcCceecCCcCCHHHHHHHHHHHHHhCCHHHHHHHCCCcCC--CCceecHHHHHHHHHHHHCCCcEEEec
Confidence 2 899999999999999778999999999999999999999999999997 689999999999999999999999998
Q ss_pred eCCCCCCcEEEEEEEEecCCCceecCCCCC-CCCC-CceEe
Q 042583 161 KGDDGISHLKEVIICVDDQAQSFIQCAKQK-DRCY-FDIMF 199 (206)
Q Consensus 161 ~~~~~~~~L~Ev~iC~~~~~~~~i~Cp~~~-~~C~-~~i~~ 199 (206)
+++ |+++|.||+||+|+++..+++||... +.|| ..|+|
T Consensus 156 ~~~-~~~~L~Ev~iC~~~~~~~~~~C~~~~~~~C~~~~i~~ 195 (195)
T cd00374 156 KDP-GKGLLTEIWICFDKDALKFIDCPTPGKSTCPADGIKF 195 (195)
T ss_pred cCC-CCcEEEEEEEEEECCCCeEEeCCCCCCCCCCCCcEEC
Confidence 865 56899999999999944599999874 3499 67765
No 4
>PF00445 Ribonuclease_T2: Ribonuclease T2 family; InterPro: IPR001568 The fungal ribonucleases T2 from Aspergillus oryzae, M from Aspergillus saitoi and Rh from Rhizopus niveus are structurally and functionally related 30 Kd glycoproteins [] that cleave the 3'-5' internucleotide linkage of RNA via a nucleotide 2',3'-cyclic phosphate intermediate (3.1.27.1 from EC). Two histidines residues have been shown [, ] to be involved in the catalytic mechanism of RNase T2 and Rh. These residues and the region around them are highly conserved in a number of other RNAses that have been found to be evolutionary related to these fungal enzymes.; GO: 0003723 RNA binding, 0033897 ribonuclease T2 activity; PDB: 1IOO_A 3D3Z_A 1UCG_B 1UCC_A 1J1F_A 1V9H_A 1UCD_A 1J1G_A 1UCA_A 1BK7_A ....
Probab=100.00 E-value=7.6e-52 Score=338.19 Aligned_cols=161 Identities=35% Similarity=0.744 Sum_probs=139.9
Q ss_pred ccEEEEEEecccccccC--CCCCCC-CCCcEEeeeecccc-------------------CC---CcchhhhcccCcCcCC
Q 042583 23 FDHFWLVQVWPSGYCLQ--ANCSQT-SDRFIIHGLWAVNV-------------------VD---KTLPDLMRYWLPLNEN 77 (206)
Q Consensus 23 fD~~~l~l~W~p~~C~~--~~C~~p-~~~ftIHGLWP~~~-------------------~~---~l~~~L~~~Wp~l~~~ 77 (206)
||||+|||+|||+||.. .+|..+ ..+||||||||++. +. ++..+|+++||++..+
T Consensus 1 fD~~~l~~~W~p~~C~~~~~~C~~~~~~~ftIHGLWP~~~~~~~~p~~C~~~~~~~~~~~~~~~~~~~~L~~~Wp~~~~~ 80 (189)
T PF00445_consen 1 FDYYVLALQWPPSFCSTNSPQCKPPPPNNFTIHGLWPSNCDGGTYPQNCNSSPNFDNSNLSNPPELKSELDKYWPDLKNS 80 (189)
T ss_dssp -SEEEEEEEEHHHHTSSSSSCHSSSSTSSEEEEEEEEETTTSSSCCCSSSTTTTTSGGGGGH-HGGHHHHHHHSTBSSSS
T ss_pred CeEEEEEEEeCchhcCCCCCcCCCCCCcceEEecccCCCCCCCCCcceecCccccccccchhhhHHhhhhhhhhhhhccc
Confidence 89999999999999974 349754 89999999999953 22 6788999999999876
Q ss_pred CchhhHhHHhhhccceeecccCC-CCHHHHHHHHHHHHHhCChHHHHhhCCCCCCCCCCCcccHHHHHHHHHHhh-CCCc
Q 042583 78 NLSRAENFWIYQWKKHGSAAKEF-IQPRDYFQMALQLAKDTDLRNTLQNHGAVPILPDGGSYNKRDYKAAIKNKT-GHDP 155 (206)
Q Consensus 78 ~~~~~~~fW~hEW~KHGtCs~~~-~~~~~YF~~al~l~~~~~i~~~L~~~gI~Ps~~~~~~y~~~~i~~ai~~~~-g~~p 155 (206)
+. . .||+|||.|||||++.. .++.+||++|++|++++|+.++|+++||+|+ .++.|++++|++||++++ |..|
T Consensus 81 ~~--~-~fw~hEW~KHGtC~~~~~~~~~~YF~~a~~l~~~~~~~~~L~~~gI~p~--~~~~~~~~~i~~al~~~~~~~~~ 155 (189)
T PF00445_consen 81 NS--E-SFWKHEWEKHGTCSGMDFIDQYDYFSTALKLYKKLNLPKILANAGIVPS--NGKTYSLSDIRDALKQAFNGVRP 155 (189)
T ss_dssp HH--H-HHHHHHHHHTGGGGTTTSSSHHHHHHHHHHHHHHCHHHHHHHHTTHCSC--SSEEEEHHHHHHHHHHHHTSSGE
T ss_pred hh--h-hhHHhcceeeeEEcCCchhhHHHHHHHHHHHHHhccchHHHhhcccCCC--ccccccHHHHHHHHHHHcCCCce
Confidence 53 2 89999999999999942 2399999999999999999999999999997 678999999999999999 9999
Q ss_pred eEEeeeC-CCCCCcEEEEEEEEecCCCceecCCC
Q 042583 156 LLKCVKG-DDGISHLKEVIICVDDQAQSFIQCAK 188 (206)
Q Consensus 156 ~l~C~~~-~~~~~~L~Ev~iC~~~~~~~~i~Cp~ 188 (206)
.|+|.++ .++..+|.||+||||+++..+||||.
T Consensus 156 ~l~C~~~~~~~~~~L~ei~iC~~~~~~~~idCp~ 189 (189)
T PF00445_consen 156 QLRCSRNQVNGEQYLTEIRICFDKDLFQFIDCPC 189 (189)
T ss_dssp EEEEECTETTSEEEEEEEEEEEETTSSSEE--S-
T ss_pred EEEEecCCCCCcEEEEEEEEEEeCCCCeEeCCcC
Confidence 9999996 66778999999999999866999983
No 5
>cd01062 RNase_T2_prok Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. Generally, RNases have two distinct binding sites: the primary site (B1 site) and the subsite (B2 site), for nucleotides located at the 5'- and 3'- terminal ends of the sessil bond, respectively. This CD includes the prokaryotic RNase T2 family members.
Probab=100.00 E-value=2.4e-45 Score=299.03 Aligned_cols=150 Identities=25% Similarity=0.524 Sum_probs=126.7
Q ss_pred ccEEEEEEecccccccCCC-------CCCC-CCCcEEeeeecccc----------C------CCcchhhhcccCcCcCCC
Q 042583 23 FDHFWLVQVWPSGYCLQAN-------CSQT-SDRFIIHGLWAVNV----------V------DKTLPDLMRYWLPLNENN 78 (206)
Q Consensus 23 fD~~~l~l~W~p~~C~~~~-------C~~p-~~~ftIHGLWP~~~----------~------~~l~~~L~~~Wp~l~~~~ 78 (206)
||||+|||+|||+||..+. |..+ ..+||||||||++. . ++++.+|..+||+
T Consensus 1 fd~~~lal~Wpps~C~~~~~~~~~~~~~~~~~~~ftiHGLWP~~~~~~~p~~C~~~~~~~~~~~~~~~l~~~~p~----- 75 (184)
T cd01062 1 FDYYVLALSWQPGFCATQGDRPECATCGTLDAYGFTLHGLWPQKPKGGWPEYCGVTSEPPLSEETRSRLLDVMPA----- 75 (184)
T ss_pred CceEEEEEeeCHHHhccCCcCCccccCCCCCCCceEEecCCCCCCCCCCcCcCcCCcCCCCCHHHHHHHHhhCCc-----
Confidence 7999999999999997642 2333 78999999999874 1 1244578889992
Q ss_pred chhhHhHHhhhccceeecccCCCCHHHHHHHHHHHHHhCChHHHHhhCCCCCCCCCCCcccHHHHHHHHHHhhCCCc---
Q 042583 79 LSRAENFWIYQWKKHGSAAKEFIQPRDYFQMALQLAKDTDLRNTLQNHGAVPILPDGGSYNKRDYKAAIKNKTGHDP--- 155 (206)
Q Consensus 79 ~~~~~~fW~hEW~KHGtCs~~~~~~~~YF~~al~l~~~~~i~~~L~~~gI~Ps~~~~~~y~~~~i~~ai~~~~g~~p--- 155 (206)
. .||+|||+|||||++ .++.+||++|++|++++|+.++|+..++ + .+ |+.++|++||++++|..|
T Consensus 76 ~----~~w~hEW~KHGtC~~--~~~~~YF~~a~~l~~~~~~~~~l~~~~~-~---~~--~~~~~i~~a~~~~~~~~~~~~ 143 (184)
T cd01062 76 S----GLIRHEWRKHGTCSG--LDPDAYFAKARNLREALKIPPELRLLAG-N---IG--VTASEIRQAFIKANPGLPPDA 143 (184)
T ss_pred h----hHhHHHHhcCCcCCC--CCHHHHHHHHHHHHHHcCcchhhhhccc-c---CC--cCHHHHHHHHHHHCCCCCCce
Confidence 2 799999999999998 8999999999999999999999998654 3 24 999999999999999776
Q ss_pred -eEEeeeCCCCCCcEEEEEEEEecCCCceecCCCCCC-CCCC
Q 042583 156 -LLKCVKGDDGISHLKEVIICVDDQAQSFIQCAKQKD-RCYF 195 (206)
Q Consensus 156 -~l~C~~~~~~~~~L~Ev~iC~~~~~~~~i~Cp~~~~-~C~~ 195 (206)
.|+|.+ ++|.||+||||++++ +++||.... .|++
T Consensus 144 ~~~~C~~-----~~L~Ei~iC~~~~~~-~~~C~~~~~~~C~~ 179 (184)
T cd01062 144 VSVSCQG-----GLLTEVRICLDKDLK-FAACPTADRDNCPA 179 (184)
T ss_pred EEEEECC-----CeEEEEEEEeCcccC-cccCCccccCCCCC
Confidence 899965 799999999999986 999998643 3995
No 6
>PRK10095 ribonuclease I; Provisional
Probab=100.00 E-value=8.1e-41 Score=285.55 Aligned_cols=166 Identities=23% Similarity=0.453 Sum_probs=127.2
Q ss_pred CCCCccEEEEEEecccccccCC---------CCCC------CCCCcEEeeeecccc------------------------
Q 042583 19 DSSGFDHFWLVQVWPSGYCLQA---------NCSQ------TSDRFIIHGLWAVNV------------------------ 59 (206)
Q Consensus 19 ~~~~fD~~~l~l~W~p~~C~~~---------~C~~------p~~~ftIHGLWP~~~------------------------ 59 (206)
.+|+||||+|||+|+|+||... +|.. ....||||||||++.
T Consensus 30 ~~g~fd~YvLALSWqP~fC~~~~~~~~~~~~eC~~~~~~~~~~~~f~LHGLWP~~~~~~~~~g~~~~~~~~~~C~~~~~p 109 (268)
T PRK10095 30 QYGDFDRYVLALSWQTGFCQSQHDRNRNEPDECRLQKETTNKADFLTVHGLWPGLPKSVAARGVDERRWMRFGCATRPIP 109 (268)
T ss_pred cCCCcceEEEEEeeCHHHHhhhccccCCCchhhhccccCCCCCCceEEecCCCCCcccccccCccccccccccccccCCC
Confidence 4789999999999999999531 3862 257799999999761
Q ss_pred ------------------CCCcchhhhcccCcCcCCCchhhHhHHhhhccceeecccCCCCHHHHHHHHHHHHHhCChHH
Q 042583 60 ------------------VDKTLPDLMRYWLPLNENNLSRAENFWIYQWKKHGSAAKEFIQPRDYFQMALQLAKDTDLRN 121 (206)
Q Consensus 60 ------------------~~~l~~~L~~~Wp~l~~~~~~~~~~fW~hEW~KHGtCs~~~~~~~~YF~~al~l~~~~~i~~ 121 (206)
.+++...|..++|+....+ .||+|||+|||||++ +++.+||.++++|++++|++.
T Consensus 110 ~~p~~~~~~~C~~~~~~l~~~~~~~l~~~mP~~~~~s-----~l~~heW~KHGtC~~--~~~~~YF~~al~L~~kvn~s~ 182 (268)
T PRK10095 110 NLPEARASRKCSAPETGLSLETAAKLSEVMPGAGGRS-----CLERYEYAKHGACFG--FDPDAYFGTMVRLNQEIKESE 182 (268)
T ss_pred ccccccccccccCCCCCCCHHHHHHHHHhCCCCCccc-----hhHHHHHHhCCeecC--CCHHHHHHHHHHHHHHhchhh
Confidence 0112334455555553221 699999999999998 899999999999999999644
Q ss_pred ---HHhhCCCCCCCCCCCcccHHHHHHHHHHhhCC----CceEEeeeCCCCCCcEEEEEEEEecC-------CCceecCC
Q 042583 122 ---TLQNHGAVPILPDGGSYNKRDYKAAIKNKTGH----DPLLKCVKGDDGISHLKEVIICVDDQ-------AQSFIQCA 187 (206)
Q Consensus 122 ---~L~~~gI~Ps~~~~~~y~~~~i~~ai~~~~g~----~p~l~C~~~~~~~~~L~Ev~iC~~~~-------~~~~i~Cp 187 (206)
+|.++ .|+.|+.++|++||++++|. .|.|+|.++. .+|.||+||++++ ...+++|+
T Consensus 183 ~~~~L~~~-------~Gk~~s~~~I~~Ai~~a~G~~~~~~~~L~C~~~~---~~L~EV~ICl~~~~~~~~l~~~~~~~~~ 252 (268)
T PRK10095 183 AGKFLADN-------YGKTVSRRDFDAAFAKSWGKENVKAVKLTCQGNP---AYLTEIQISLKADAINAPLSANSFLPQP 252 (268)
T ss_pred hhhhhhcC-------CCcEEcHHHHHHHHHHHhCCCCCCcceEEeCCCC---cEEEEEEEEcccccccCCchhhhccCCC
Confidence 56553 48999999999999999984 4599998632 5899999999988 21246777
Q ss_pred CCCCCCCCceEecCC
Q 042583 188 KQKDRCYFDIMFDVP 202 (206)
Q Consensus 188 ~~~~~C~~~i~~P~~ 202 (206)
.. ++|+..|++|+.
T Consensus 253 ~~-~~C~~~~~i~~~ 266 (268)
T PRK10095 253 HP-GNCGKQFVIDKA 266 (268)
T ss_pred CC-CCCCCCeeeCCC
Confidence 53 339999887653
No 7
>COG3719 Rna Ribonuclease I [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-38 Score=262.53 Aligned_cols=161 Identities=25% Similarity=0.548 Sum_probs=126.3
Q ss_pred CccEEEEEEecccccccCCC--------CCCC-CCCcEEeeeeccccCC---Ccchhhh--cccCcCcCCC-------ch
Q 042583 22 GFDHFWLVQVWPSGYCLQAN--------CSQT-SDRFIIHGLWAVNVVD---KTLPDLM--RYWLPLNENN-------LS 80 (206)
Q Consensus 22 ~fD~~~l~l~W~p~~C~~~~--------C~~p-~~~ftIHGLWP~~~~~---~l~~~L~--~~Wp~l~~~~-------~~ 80 (206)
.||+|+|+|+|+|+||.++. |... ..+||+|||||++... ....+-. ..||+|.... .+
T Consensus 52 g~d~YVLALSWsP~fC~sq~~~~e~~~Qc~~~~~~gftVHGLWPqn~~~~~~~~~pr~cr~~~~~~lP~v~~~~l~~vmP 131 (249)
T COG3719 52 GFDFYVLALSWSPGFCESQHDPDECRLQCETNRAFGFTVHGLWPQNENGRAVRDYPRFCRGRPWPRLPEVIASQLLDVMP 131 (249)
T ss_pred CcceEEEEEecChHHhhcCCCcchhHHhcccccccceEEeccCCCCCCCcccccChhhhcCCCcccCCHHHHHHHhhcCC
Confidence 39999999999999998753 6633 7899999999998711 0111111 2466553211 11
Q ss_pred hhHhHHhhhccceeecccCCCCHHHHHHHHHHHHHhCChHHHHhhCCCCCCCCCCCcccHHHHHHHHHHhhCC----Cce
Q 042583 81 RAENFWIYQWKKHGSAAKEFIQPRDYFQMALQLAKDTDLRNTLQNHGAVPILPDGGSYNKRDYKAAIKNKTGH----DPL 156 (206)
Q Consensus 81 ~~~~fW~hEW~KHGtCs~~~~~~~~YF~~al~l~~~~~i~~~L~~~gI~Ps~~~~~~y~~~~i~~ai~~~~g~----~p~ 156 (206)
+. .|-+|||+|||||++ .+|.+||.++++|+++++++..+...- ++++++.++|+.||.+++|. .+.
T Consensus 132 g~-~L~~heW~KHGtC~g--~s~~~YFa~~r~l~~~l~~p~~~~~~a------~~~~ls~~ei~~AF~~~n~~~~~~~v~ 202 (249)
T COG3719 132 GA-GLERHEWRKHGTCSG--LSQEAYFATTRRLFEELKLPPVRKLLA------DGKTLSRDEIEQAFDKANGGLKGDAVR 202 (249)
T ss_pred ch-hhhhhhHHhcCccCC--CCHHHHHHHHHHHHHHhcCCccccccc------cccccCHHHHHHHHHHhCCCCCchheE
Confidence 23 799999999999999 999999999999999999988765431 47889999999999999963 578
Q ss_pred EEeeeCCCCCCcEEEEEEEEecCCCceecC----CCCCCC-CCCce
Q 042583 157 LKCVKGDDGISHLKEVIICVDDQAQSFIQC----AKQKDR-CYFDI 197 (206)
Q Consensus 157 l~C~~~~~~~~~L~Ev~iC~~~~~~~~i~C----p~~~~~-C~~~i 197 (206)
+.|.. ++|+||+||+|++.. +++| |..... |+..+
T Consensus 203 vsc~~-----~~LtEl~Icl~~~~~-~~ac~~~~~~~~~~~C~~~~ 242 (249)
T COG3719 203 VSCQG-----NYLTELRICLDKDLQ-NAACLADLPQPDPGNCRKTF 242 (249)
T ss_pred EEeec-----cceeeEEEEEccccc-cchhhccCCCCCcccccccc
Confidence 99987 699999999999997 7999 766554 99743
No 8
>PF01328 Peroxidase_2: Peroxidase, family 2; InterPro: IPR000028 Chloroperoxidase (CPO), also known as Heme haloperoxidase, is a ~250 residue heme-containing glycoprotein that is secreted by various fungi. Chloroperoxidase was first identified in Caldariomyces fumago where it catalyzes the hydrogen peroxide-dependent chlorination of cyclopentanedione during the biosynthesis of the antibiotic caldarioymcin. Additionally, heme haloperoxidase catalyzes the iodination and bromination of a wide range of substrates. Besides performing H2O2-dependent halogenation reactions, the enzyme catalyzes dehydrogenation reactions. Chloroperoxidase also functions as a catalase, facilitating the decomposition of hydrogen peroxide to oxygen and water. Furthermore, chloroperoxidase catalyzes P450-like oxygen insertion reactions. The capability of chloroperoxidase to perform these diverse reactions makes it one of the most versatile of all known heme proteins [, ]. Despite functional similarities with other heme enzymes, chloroperoxidase folds into a novel tertiary structure dominated by eight helical segments []. Structurally, chloroperoxidase is unique, but it shares features with both peroxidases and P450 enzymes. As in cytochrome P450 enzymes, the proximal heme ligand is a cysteine, but similar to peroxidases, the distal side of the heme is polar. However, unlike other peroxidases, the normally conserved distal arginine is lacking and the catalytic acid base is a glutamic acid and not a histidine [].; GO: 0004601 peroxidase activity; PDB: 2J5M_A 2J19_A 2CIW_A 2CJ0_A 2CIV_A 2CPO_A 1CPO_A 2CJ2_A 2J18_A 2CIZ_A ....
Probab=69.72 E-value=4.2 Score=36.12 Aligned_cols=40 Identities=25% Similarity=0.290 Sum_probs=28.7
Q ss_pred HhCChHHHHhhCCCCCCCCCCCcccHHHHHHHHHHhhCCCce
Q 042583 115 KDTDLRNTLQNHGAVPILPDGGSYNKRDYKAAIKNKTGHDPL 156 (206)
Q Consensus 115 ~~~~i~~~L~~~gI~Ps~~~~~~y~~~~i~~ai~~~~g~~p~ 156 (206)
.-..-+++|+++|+.|. +|+.++..++.+++.+++|..+.
T Consensus 48 gPCPgLNtLANHGyLPr--nG~~It~~~l~~al~~~~n~~~~ 87 (317)
T PF01328_consen 48 GPCPGLNTLANHGYLPR--NGRNITVEQLINALQEGYNLSPD 87 (317)
T ss_dssp -S-HHHHHHHHTTSS-T--T-EEE-HHHHHHHHHHHH-B-HH
T ss_pred CCCccHHHHHhcCccCC--CCccccHHHHHHHHHHHhCCChH
Confidence 33456789999999998 89999999999999999987654
No 9
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=62.43 E-value=14 Score=21.99 Aligned_cols=30 Identities=20% Similarity=0.279 Sum_probs=22.6
Q ss_pred ChHHHHhhCCCCCCCCCCCcccHHHHHHHHHHh
Q 042583 118 DLRNTLQNHGAVPILPDGGSYNKRDYKAAIKNK 150 (206)
Q Consensus 118 ~i~~~L~~~gI~Ps~~~~~~y~~~~i~~ai~~~ 150 (206)
++.+.|.+.||..+ ....+++++.+.+++.
T Consensus 8 ~L~~wL~~~gi~~~---~~~~~rd~Ll~~~k~~ 37 (38)
T PF10281_consen 8 DLKSWLKSHGIPVP---KSAKTRDELLKLAKKN 37 (38)
T ss_pred HHHHHHHHcCCCCC---CCCCCHHHHHHHHHHh
Confidence 45678999999884 3335999999888764
No 10
>PF08255 Leader_Trp: Trp-operon Leader Peptide; InterPro: IPR013205 The tryptophan operon regulatory region of Citrobacter freundii (leader transcript) encodes a 14-residue peptide containing characteristic tandem tryptophan residues. It is about 10 nucleotides shorter than those of Escherichia coli and Salmonella typhimurium [].
Probab=59.53 E-value=6 Score=18.70 Aligned_cols=10 Identities=40% Similarity=1.099 Sum_probs=7.8
Q ss_pred CCcEEeeeec
Q 042583 47 DRFIIHGLWA 56 (206)
Q Consensus 47 ~~ftIHGLWP 56 (206)
.-|.+||.|-
T Consensus 3 a~~~L~~WWr 12 (14)
T PF08255_consen 3 ATFSLHGWWR 12 (14)
T ss_pred eEEEEeeEEE
Confidence 3588999994
No 11
>cd00524 SORL Superoxide reductase-like (SORL) domain; present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. The SORL domain contains an active iron site, Fe[His4Cys(Glu)], which in the reduced state loses the glutamate ligand. Superoxide reductase (class II) forms a homotetramer with four Fe[His4Cys(Glu)] centers. Desulfoferrodoxin (class I) is a homodimeric protein, with each protomer comprised of two domains, the N-terminal desulforedoxin (DSRD) domain and C-terminal SORL domain. Each domain has a distinct iron center: the DSRD iron center I, Fe(S-Cys)4; and the SORL iron center II, Fe[His4Cys(Glu)].
Probab=47.02 E-value=7.3 Score=27.51 Aligned_cols=6 Identities=67% Similarity=1.708 Sum_probs=5.3
Q ss_pred EEeeee
Q 042583 50 IIHGLW 55 (206)
Q Consensus 50 tIHGLW 55 (206)
++||||
T Consensus 80 N~HGlw 85 (86)
T cd00524 80 NLHGLW 85 (86)
T ss_pred ccceee
Confidence 589999
No 12
>cd03171 SORL_Dfx_classI Superoxide reductase-like (SORL) domain, class I; SORL-domains are present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. Desulfoferrodoxin (class I) is a homodimeric protein, with each protomer comprised of two domains, the N-terminal desulforedoxin (DSRD) domain and C-terminal SORL domain. Each domain has a distinct iron center: the DSRD iron center I, Fe(S-Cys)4; and the SORL iron center II, Fe[His4Cys(Glu)].
Probab=46.51 E-value=7.3 Score=27.34 Aligned_cols=6 Identities=67% Similarity=1.708 Sum_probs=5.3
Q ss_pred EEeeee
Q 042583 50 IIHGLW 55 (206)
Q Consensus 50 tIHGLW 55 (206)
++||||
T Consensus 72 NlHGLW 77 (78)
T cd03171 72 NLHGLW 77 (78)
T ss_pred ccccee
Confidence 689999
No 13
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=42.85 E-value=41 Score=23.64 Aligned_cols=27 Identities=37% Similarity=0.683 Sum_probs=23.3
Q ss_pred CCcccHHHHHHHHHHhhCCCc-eEEeee
Q 042583 135 GGSYNKRDYKAAIKNKTGHDP-LLKCVK 161 (206)
Q Consensus 135 ~~~y~~~~i~~ai~~~~g~~p-~l~C~~ 161 (206)
+++|+.++++++|.+.||... .=.|+.
T Consensus 15 ~~~~t~~~L~~~i~~~FG~~arFhTCSa 42 (77)
T TIGR03853 15 GEPYTRESLKAAIEQKFGEDARFHTCSA 42 (77)
T ss_pred CCCcCHHHHHHHHHHHhCCCceEeeccc
Confidence 788999999999999999765 467876
No 14
>cd03172 SORL_classII Superoxide reductase-like (SORL) domain, class II; SORL-domains are present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. The SORL domain contains an active iron site, Fe[His4Cys(Glu)], which in the reduced state loses the glutamate ligand. Superoxide reductase (class II) forms a homotetramer with four Fe[His4Cys(Glu)] centers.
Probab=41.44 E-value=9.7 Score=28.08 Aligned_cols=8 Identities=63% Similarity=1.290 Sum_probs=6.3
Q ss_pred EEeeeecc
Q 042583 50 IIHGLWAV 57 (206)
Q Consensus 50 tIHGLWP~ 57 (206)
++||||=+
T Consensus 95 NlHGLW~~ 102 (104)
T cd03172 95 NIHGLWES 102 (104)
T ss_pred ccceeEEe
Confidence 58999954
No 15
>TIGR00332 neela_ferrous desulfoferrodoxin ferrous iron-binding domain. The N-terminal domain of desulfoferrodoxin is described in a separate model, dfx_rbo (TIGR00320).
Probab=40.63 E-value=9.6 Score=28.34 Aligned_cols=8 Identities=63% Similarity=1.286 Sum_probs=6.4
Q ss_pred EEeeeecc
Q 042583 50 IIHGLWAV 57 (206)
Q Consensus 50 tIHGLWP~ 57 (206)
++||||=+
T Consensus 93 NlHGLW~~ 100 (107)
T TIGR00332 93 NIHGLWEY 100 (107)
T ss_pred cccccEEe
Confidence 58999954
No 16
>PF08368 FAST_2: FAST kinase-like protein, subdomain 2; InterPro: IPR013579 This domain represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases (2.7.1 from EC) that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins. This subdomain is often found associated with the FAST kinase-like protein, subdomain 2.
Probab=39.89 E-value=1e+02 Score=21.84 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHhhCCCceEEeeeCCCCCCcEEEEEEEEecCCC
Q 042583 139 NKRDYKAAIKNKTGHDPLLKCVKGDDGISHLKEVIICVDDQAQ 181 (206)
Q Consensus 139 ~~~~i~~ai~~~~g~~p~l~C~~~~~~~~~L~Ev~iC~~~~~~ 181 (206)
-..+|++++++.+|..-.+++.-. ...++...+.+++|++++
T Consensus 49 ~~~~v~~~L~~lLg~~~~~~~~v~-tp~gy~iD~E~~lD~~~~ 90 (93)
T PF08368_consen 49 LQQEVQEALKSLLGGENYFRSNVI-TPYGYTIDFEIVLDKNGK 90 (93)
T ss_pred HHHHHHHHHHHHhCCccceEEccc-cCCCceEEEEEEECCCCC
Confidence 578899999999998777777543 234788999999999975
No 17
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=36.10 E-value=31 Score=23.45 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHHhCChHHHHhhCCCCCCCCCCCcccH
Q 042583 102 QPRDYFQMALQLAKDTDLRNTLQNHGAVPILPDGGSYNK 140 (206)
Q Consensus 102 ~~~~YF~~al~l~~~~~i~~~L~~~gI~Ps~~~~~~y~~ 140 (206)
+...||+. .+++.++.++|.++|+++ |.++.+
T Consensus 31 e~~~~f~~---~L~~~Gv~~~L~~~G~~~----GD~V~I 62 (69)
T TIGR03595 31 ENLRRFAR---KLKKLGVEDALRKAGAKD----GDTVRI 62 (69)
T ss_pred HHHHHHHH---HHHHCCHHHHHHHcCCCC----CCEEEE
Confidence 45566654 457789999999999998 666544
No 18
>COG2033 Desulfoferrodoxin [Energy production and conversion]
Probab=35.18 E-value=16 Score=27.89 Aligned_cols=8 Identities=63% Similarity=1.194 Sum_probs=6.3
Q ss_pred EEeeeecc
Q 042583 50 IIHGLWAV 57 (206)
Q Consensus 50 tIHGLWP~ 57 (206)
-|||||=.
T Consensus 114 NiHGLWe~ 121 (126)
T COG2033 114 NIHGLWEG 121 (126)
T ss_pred ceeeeeec
Confidence 58999954
No 19
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=34.72 E-value=58 Score=22.93 Aligned_cols=28 Identities=39% Similarity=0.659 Sum_probs=23.4
Q ss_pred CCcccHHHHHHHHHHhhCCCc-eEEeeeC
Q 042583 135 GGSYNKRDYKAAIKNKTGHDP-LLKCVKG 162 (206)
Q Consensus 135 ~~~y~~~~i~~ai~~~~g~~p-~l~C~~~ 162 (206)
+..|+.+++.+||.+.||... --.|+..
T Consensus 17 ~~~~t~~~L~~ai~~~FG~~arFhTCSae 45 (78)
T PF10678_consen 17 GNPYTKEELKAAIIEKFGEDARFHTCSAE 45 (78)
T ss_pred CCCcCHHHHHHHHHHHhCCCceEEecCCC
Confidence 778999999999999999765 4678763
No 20
>PF01880 Desulfoferrodox: Desulfoferrodoxin; InterPro: IPR002742 Desulfoferrodoxins contains two types of iron: an Fe-S4 site very similar to that found in desulfoferrodoxin from Desulfovibrio gigas, and an octahedral coordinated high-spin ferrous site most probably with nitrogen/oxygen-containing ligands. Due to this rather unusual combination of active centres, this novel protein is named desulfoferrodoxin []. This domain comprises essentially the full length of neelaredoxin (O50258 from SWISSPROT, []), a monomeric, blue, non-haem iron protein of D. gigas said to bind two iron atoms per monomer with identical spectral properties. Neelaredoxin was shown recently to have significant superoxide dismutase activity []. This domain is also found (in a form in which the distance between the motifs H[HWYF]IXW and CN[IL]HGXW is somewhat shorter) as the C-terminal domain of desulfoferrodoxin, which is said to bind a single ferrous iron atom. The N-terminal domain of desulfoferrodoxin is described by IPR004462 from INTERPRO.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1VZI_B 2JI2_D 1VZH_B 2JI3_C 2JI1_C 1VZG_A 1Y07_D 1DFX_A 3QZB_A 2AMU_A ....
Probab=34.48 E-value=12 Score=27.18 Aligned_cols=8 Identities=50% Similarity=1.190 Sum_probs=5.8
Q ss_pred EEeeeecc
Q 042583 50 IIHGLWAV 57 (206)
Q Consensus 50 tIHGLWP~ 57 (206)
.|||||=+
T Consensus 88 NlHGLW~~ 95 (96)
T PF01880_consen 88 NLHGLWEN 95 (96)
T ss_dssp TTTEEEEE
T ss_pred cccccEec
Confidence 47999943
No 21
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=34.14 E-value=25 Score=25.55 Aligned_cols=9 Identities=44% Similarity=0.349 Sum_probs=6.1
Q ss_pred CchhhHHHH
Q 042583 1 MKIKASCLF 9 (206)
Q Consensus 1 m~~~~~~~~ 9 (206)
|-+|.++||
T Consensus 1 MaSK~~llL 9 (95)
T PF07172_consen 1 MASKAFLLL 9 (95)
T ss_pred CchhHHHHH
Confidence 777766665
No 22
>TIGR00320 dfx_rbo desulfoferrodoxin. This protein is described in some articles as rubredoxin oxidoreductase (rbo), and its gene shares an operon with the rubredoxin gene in Desulfovibrio vulgaris Hildenborough.
Probab=32.43 E-value=16 Score=27.94 Aligned_cols=7 Identities=57% Similarity=1.222 Sum_probs=5.8
Q ss_pred EEeeeec
Q 042583 50 IIHGLWA 56 (206)
Q Consensus 50 tIHGLWP 56 (206)
++||||=
T Consensus 117 NlHGLW~ 123 (125)
T TIGR00320 117 NIHGHWK 123 (125)
T ss_pred cccceEE
Confidence 5899994
No 23
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=31.82 E-value=66 Score=21.76 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHhCChHHHHhhCCCCCCCCCCCcccH
Q 042583 102 QPRDYFQMALQLAKDTDLRNTLQNHGAVPILPDGGSYNK 140 (206)
Q Consensus 102 ~~~~YF~~al~l~~~~~i~~~L~~~gI~Ps~~~~~~y~~ 140 (206)
....||+.. +++.++.+.|.++|+++ |.++.+
T Consensus 31 e~~~rf~~~---L~~~Gv~~~L~~~G~~~----GD~V~I 62 (69)
T PF09269_consen 31 ESLRRFQRK---LKKMGVEKALRKAGAKE----GDTVRI 62 (69)
T ss_dssp GGHHHHHHH---HHHTTHHHHHHTTT--T----T-EEEE
T ss_pred HHHHHHHHH---HHHCCHHHHHHHcCCCC----CCEEEE
Confidence 456677655 46779999999999987 665543
No 24
>PF00446 GnRH: Gonadotropin-releasing hormone; InterPro: IPR002012 The gonadotropin-releasing hormones (GnRH) (gonadoliberin) [] are a family of peptides that play a pivotal role in reproduction. The main function of GnRH is to act on the pituitary to stimulate the synthesis and secretion of luteinizing and follicle-stimulating hormones, but GnRH also acts on the brain, retina, sympathetic nervous system, gonads and placenta in certain species. There seems to be at least three forms of GnRH. The second form is expressed in midbrain and seems to be widespread. The third form has only been found so far in fish. GnRH is a C-terminal amidated decapeptide processed from a larger precursor protein. Four of the ten residues are perfectly conserved in all species where GnRH has been sequenced.; GO: 0005179 hormone activity, 0007275 multicellular organismal development, 0005576 extracellular region
Probab=31.61 E-value=14 Score=15.88 Aligned_cols=6 Identities=50% Similarity=1.475 Sum_probs=4.0
Q ss_pred Hhhhcc
Q 042583 86 WIYQWK 91 (206)
Q Consensus 86 W~hEW~ 91 (206)
|+|+|.
T Consensus 3 wS~~w~ 8 (10)
T PF00446_consen 3 WSHGWK 8 (10)
T ss_pred cccccC
Confidence 677774
No 25
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=27.30 E-value=73 Score=20.27 Aligned_cols=29 Identities=17% Similarity=0.381 Sum_probs=18.4
Q ss_pred hHHHHhhCCCCCCCCCCCcccHHHHHHHHHHhhCCC
Q 042583 119 LRNTLQNHGAVPILPDGGSYNKRDYKAAIKNKTGHD 154 (206)
Q Consensus 119 i~~~L~~~gI~Ps~~~~~~y~~~~i~~ai~~~~g~~ 154 (206)
+.++|+.++ -.++|..+|+.++++.+|..
T Consensus 9 i~~iL~~~d-------l~~vT~k~vr~~Le~~~~~d 37 (54)
T PF08766_consen 9 IREILREAD-------LDTVTKKQVREQLEERFGVD 37 (54)
T ss_dssp HHHHHTTS--------GGG--HHHHHHHHHHH-SS-
T ss_pred HHHHHHhCC-------HhHhhHHHHHHHHHHHHCCC
Confidence 455676663 35589999999999999854
No 26
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=26.58 E-value=48 Score=18.20 Aligned_cols=12 Identities=33% Similarity=0.276 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhc
Q 042583 6 SCLFLLALLATT 17 (206)
Q Consensus 6 ~~~~~~~~~~~~ 17 (206)
+++++++++.|+
T Consensus 10 il~~l~a~~~La 21 (25)
T PF08139_consen 10 ILFPLLALFMLA 21 (25)
T ss_pred HHHHHHHHHHHh
Confidence 555545555444
No 27
>cd07885 RHD-n_RelA N-terminal sub-domain of the Rel homology domain (RHD) of RelA. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD domain of the RelA family of transcription factors, categorized as a class II member of the NF-kappa B family. In class II NF-kappa Bs, the RHD domain co-occurs with a C-terminal transactivation domain (TAD). NF-kappa B proteins are part of a protein complex that acts as a transcription factor, which is responsible for regulating a host of cellular responses to a variety of stimuli. This complex tightly regulates the expression of a large number of genes, and is involved in processes such as adaptive and innate immunity, stress response, inflammation, cell adhesion, proliferation and apoptosis. The cytosolic NF-kappa B complex is activated via phosphorylation of the ankyrin-repeat containing inhibitory protein I-kappa B, which
Probab=24.98 E-value=31 Score=27.87 Aligned_cols=73 Identities=21% Similarity=0.322 Sum_probs=40.6
Q ss_pred hHHhhhccceeecccCCCCHHHHHHHHHHHHHhCChHHHHhhCCCCCCCCCCCcccHHHHHHHHHHhh--CCCce-EEee
Q 042583 84 NFWIYQWKKHGSAAKEFIQPRDYFQMALQLAKDTDLRNTLQNHGAVPILPDGGSYNKRDYKAAIKNKT--GHDPL-LKCV 160 (206)
Q Consensus 84 ~fW~hEW~KHGtCs~~~~~~~~YF~~al~l~~~~~i~~~L~~~gI~Ps~~~~~~y~~~~i~~ai~~~~--g~~p~-l~C~ 160 (206)
+|--.+ .|+|.|...+ .+.++ .-.+.+-|| +-+++.+|.++|++.. +.+|. +...
T Consensus 71 ~LVGK~-C~~Gvc~v~v-~p~~~-------------~~~F~nLGI-------qcV~KKdv~e~L~~R~~~~~~pf~~~~~ 128 (169)
T cd07885 71 ELVGKD-CKDGYYEAEL-SPDRC-------------IHSFQNLGI-------QCVKKRDLEQAVSQRIQTNNNPFNVPIE 128 (169)
T ss_pred hhcccc-cCCcEEEEEe-CCCCc-------------EEEecccee-------EEEEeccHHHHHHHHHHhcCCCCccchh
Confidence 455545 5789998864 33221 112344455 3367777777777654 33332 1111
Q ss_pred eCCCCCCcEEEEEEEEecC
Q 042583 161 KGDDGISHLKEVIICVDDQ 179 (206)
Q Consensus 161 ~~~~~~~~L~Ev~iC~~~~ 179 (206)
. ....-.|..||+||-.-
T Consensus 129 ~-~~~~iDLn~VRLcFqaf 146 (169)
T cd07885 129 E-QRADYDLNAVRLCFQVT 146 (169)
T ss_pred H-hhcccchhhEEEEEEEE
Confidence 1 12336799999999753
No 28
>cd07884 RHD-n_Relish N-terminal sub-domain of the Rel homology domain (RHD) of the arthropod protein Relish. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the arthropod Relish protein, in which the RHD domain co-occurs with C-terminal ankyrin repeats. Family members are sometimes referred to as p110 or p68 (proteolytically processed form). Relish is an NF-kappa B-like transcription factor, which plays a role in mediating innate immunity in Drosophila. It is activated via the Imd (immune deficiency) pathway, which triggers phosphorylation of Relish. IKK-dependent proteolytic cleavage of Relish (which involves Dredd) results in a smaller active form (without the C-terminal ankyrin repeats), which is transported into the nucleus and functions as a transactivator.
Probab=23.26 E-value=47 Score=26.60 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=22.4
Q ss_pred cccHHHHHHHHHHhhCCCceEEeeeCCCCCCcEEEEEEEEecC
Q 042583 137 SYNKRDYKAAIKNKTGHDPLLKCVKGDDGISHLKEVIICVDDQ 179 (206)
Q Consensus 137 ~y~~~~i~~ai~~~~g~~p~l~C~~~~~~~~~L~Ev~iC~~~~ 179 (206)
-+.+.+|.++|.+. + .-.|.+||+||..-
T Consensus 107 cv~Kk~v~~~L~~r----------~----~idLn~VRLcFqaf 135 (159)
T cd07884 107 HTAKKNIPEELYKK----------K----NMNLNQVVLRFQAF 135 (159)
T ss_pred EEEecchHHHHhhh----------c----ccCcccEEEEEEEE
Confidence 36788888888774 2 26799999999863
No 29
>cd07886 RHD-n_RelB N-terminal sub-domain of the Rel homology domain (RHD) of the reticuloendotheliosis viral oncogene homolog B (RelB) protein. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the RelB family of transcription factors, categorized as class II NF-kappa B family members. In class II NF-kappa Bs, the RHD domain co-occurs with a C-terminal transactivation domain (TAD). NF-kappa B proteins are part of a protein complex that acts as a transcription factor, which is responsible for regulating a host of cellular responses to a variety of stimuli. This complex tightly regulates the expression of a large number of genes, and is involved in processes such as adaptive and innate immunity, stress response, inflammation, cell adhesion, proliferation and apoptosis. The cytosolic NF-kappa B complex is activated via phosphorylation of the anky
Probab=21.71 E-value=80 Score=25.59 Aligned_cols=75 Identities=17% Similarity=0.220 Sum_probs=38.9
Q ss_pred hHHhhhccceeecccCCCCHHHHHHHHHHHHHhCChHHHHhhCCCCCCCCCCCcccHHHHHHHHHHhh--CCCceEEeee
Q 042583 84 NFWIYQWKKHGSAAKEFIQPRDYFQMALQLAKDTDLRNTLQNHGAVPILPDGGSYNKRDYKAAIKNKT--GHDPLLKCVK 161 (206)
Q Consensus 84 ~fW~hEW~KHGtCs~~~~~~~~YF~~al~l~~~~~i~~~L~~~gI~Ps~~~~~~y~~~~i~~ai~~~~--g~~p~l~C~~ 161 (206)
+|--.+ .|+|.|...+.....+ .-.+.+-|| +-++..+|.++|.+.. +.+|.-.=..
T Consensus 73 ~LVGK~-C~~Gvc~v~v~p~~~~-------------~~~F~nLGI-------qcv~KK~v~e~L~~R~~~~~dpf~~~~~ 131 (172)
T cd07886 73 GLVGKD-CPNGICQVTLNPHSSP-------------RHSFSNLGI-------QCVRKREIEAAIETRLQLNIDPFKAGSL 131 (172)
T ss_pred cccccc-CCCceEEEEeCCCCcc-------------EEEEcCcee-------EeeehhhhHHHHHHHHHccCCccccccc
Confidence 455445 5789999753222111 112334454 2356677777776643 2222110000
Q ss_pred CCCCCCcEEEEEEEEecC
Q 042583 162 GDDGISHLKEVIICVDDQ 179 (206)
Q Consensus 162 ~~~~~~~L~Ev~iC~~~~ 179 (206)
.....-.|..||+||-.-
T Consensus 132 ~~~~~~DLn~VRLCFqaf 149 (172)
T cd07886 132 KNHEEVDMNVVRLCFQAS 149 (172)
T ss_pred ccccccccccEEEEEEEE
Confidence 111235799999999864
No 30
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=21.69 E-value=1.3e+02 Score=18.20 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=19.2
Q ss_pred ChHHHHhhCCCCCCCCCCCcccHHHHHHHHHHhhC
Q 042583 118 DLRNTLQNHGAVPILPDGGSYNKRDYKAAIKNKTG 152 (206)
Q Consensus 118 ~i~~~L~~~gI~Ps~~~~~~y~~~~i~~ai~~~~g 152 (206)
.+..+|++.|+ +.++++++|++..|
T Consensus 29 ~~~~il~~~~i----------d~~~l~~~i~~~lg 53 (53)
T PF02861_consen 29 IAARILKKLGI----------DPEQLKAAIEKALG 53 (53)
T ss_dssp HHHHHHHHTTC----------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCC----------CHHHHHHHHHHHhC
Confidence 46678888876 56888888888765
No 31
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=20.07 E-value=1e+02 Score=19.66 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=23.9
Q ss_pred HHHHHHhCChHHHHhhCCCCCCCCCCCcccHHHHHHHHH
Q 042583 110 ALQLAKDTDLRNTLQNHGAVPILPDGGSYNKRDYKAAIK 148 (206)
Q Consensus 110 al~l~~~~~i~~~L~~~gI~Ps~~~~~~y~~~~i~~ai~ 148 (206)
+++-.=+++|.+++.++| ++..+.++|.+++.
T Consensus 2 aLk~aveLgI~dii~~~g-------~~~ls~~eia~~l~ 33 (51)
T PF08100_consen 2 ALKCAVELGIPDIIHNAG-------GGPLSLSEIAARLP 33 (51)
T ss_dssp HHHHHHHTTHHHHHHHHT-------TS-BEHHHHHHTST
T ss_pred cHHHHHHcCcHHHHHHcC-------CCCCCHHHHHHHcC
Confidence 455566789999999985 36688999887765
Done!