Query 042583
Match_columns 206
No_of_seqs 166 out of 1237
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 13:03:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042583.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042583hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iyb_A Ribonuclease, ribonucle 100.0 3.9E-59 1.3E-63 385.9 18.2 181 18-202 3-208 (208)
2 1vcz_A RNAse NGR3; hydrolase, 100.0 4.1E-58 1.4E-62 382.1 16.1 181 18-203 3-209 (217)
3 1ioo_A SF11-RNAse; SELF-incomp 100.0 1E-57 3.4E-62 374.2 15.0 174 22-201 1-196 (196)
4 1sgl_A Trichomaglin; S-like ri 100.0 2.8E-57 9.7E-62 375.0 15.7 176 20-204 2-209 (209)
5 1jy5_A CALSEPRRP; RNAse, alpha 100.0 1.5E-56 5E-61 371.4 16.1 177 20-205 2-210 (212)
6 1ucd_A Ribonuclease MC; alpha 100.0 1.4E-56 4.7E-61 365.9 15.5 169 23-199 1-190 (190)
7 3t0o_A Ribonuclease T2, ribonu 100.0 8.9E-56 3.1E-60 371.7 16.1 183 19-205 6-230 (238)
8 1iqq_A S3-RNAse; japanese PEAR 100.0 2E-54 6.7E-59 355.7 14.8 171 23-199 1-200 (200)
9 1bol_A Protein (ribonuclease R 100.0 3.2E-50 1.1E-54 335.7 12.8 161 21-201 22-221 (222)
10 2pqx_A Ribonuclease I; hydrola 100.0 1.6E-48 5.5E-53 329.7 8.8 168 18-203 6-244 (245)
11 3d3z_A Actibind; RNAse, hydrol 100.0 2.6E-47 9E-52 322.7 13.1 174 18-205 22-238 (247)
12 4dvk_A E(RNS) glycoprotein; T2 99.8 8.4E-21 2.9E-25 149.1 3.9 59 46-114 24-98 (165)
13 2ciw_A Chloroperoxidase; oxido 79.5 0.9 3.1E-05 38.7 2.4 36 118-155 31-66 (299)
14 3tl8_B Effector protein hopab2 37.0 37 0.0013 24.3 3.7 38 118-155 74-114 (117)
15 3oqg_A HPY188I; endonuclease-D 35.1 11 0.00037 28.3 0.7 20 86-110 101-120 (180)
16 3ktp_B Trinucleotide repeat-co 32.0 10 0.00035 19.5 0.1 9 30-38 4-12 (22)
17 1y07_A Desulfoferrodoxin (RBO) 27.7 9.9 0.00034 28.1 -0.6 6 51-56 121-126 (128)
18 1vzi_A Desulfoferrodoxin; ferr 27.6 9.9 0.00034 28.0 -0.6 8 50-57 117-124 (126)
19 1dqi_A SOR, superoxide reducta 25.6 13 0.00046 27.3 -0.2 8 50-57 112-119 (124)
20 2lf6_A Effector protein hopab1 23.5 35 0.0012 23.9 1.6 38 118-155 57-97 (101)
21 3tl4_X Glutaminyl-tRNA synthet 23.2 1.4E+02 0.0047 23.3 5.3 41 103-152 91-131 (187)
No 1
>1iyb_A Ribonuclease, ribonuclease M5; hydrolase; HET: 5GP; 1.50A {Nicotiana glutinosa} SCOP: d.124.1.1 PDB: 1dix_A
Probab=100.00 E-value=3.9e-59 Score=385.87 Aligned_cols=181 Identities=33% Similarity=0.656 Sum_probs=158.3
Q ss_pred CCCCCccEEEEEEecccccccCCC-CCCC-----CCCcEEeeeecccc------------------CCCcchhhhcccCc
Q 042583 18 CDSSGFDHFWLVQVWPSGYCLQAN-CSQT-----SDRFIIHGLWAVNV------------------VDKTLPDLMRYWLP 73 (206)
Q Consensus 18 ~~~~~fD~~~l~l~W~p~~C~~~~-C~~p-----~~~ftIHGLWP~~~------------------~~~l~~~L~~~Wp~ 73 (206)
..+++||||+|||+|||+||..++ |..| ..+||||||||++. +++++++|+++||+
T Consensus 3 ~~~~~fD~~~l~l~Wpp~~C~~~~~cc~p~~~~~~~~ftIHGLWP~~~~g~~p~~C~~~~~~~~~~i~~l~~~L~~~Wp~ 82 (208)
T 1iyb_A 3 EFAQDFDFFYFVQQWPGSYCDTKQSCCYPKTGKPASDFGIHGLWPNNNDGSYPSNCDSNSPYDQSQVSDLISRMQQNWPT 82 (208)
T ss_dssp CCCCSCSEEEEEEECHHHHSSSSSCCCCCTTCSCCSSCEEEEEEEECTTSCCCBSCCTTSCCCGGGGGGGHHHHHHHSCC
T ss_pred ccCCCceEEEEEEeCChHHhcCCCCCCCCCCCCCCCCCEEccccCCCCCCCCCCCCCCCCCCCchhcchhhhHhhccCCC
Confidence 357899999999999999998765 4443 47999999999864 12467789999999
Q ss_pred CcCCCchhhHhHHhhhccceeecccCCCCHHHHHHHHHHHHHhCChHHHHhhCCCCCCCCCCCcccHHHHHHHHHHhhCC
Q 042583 74 LNENNLSRAENFWIYQWKKHGSAAKEFIQPRDYFQMALQLAKDTDLRNTLQNHGAVPILPDGGSYNKRDYKAAIKNKTGH 153 (206)
Q Consensus 74 l~~~~~~~~~~fW~hEW~KHGtCs~~~~~~~~YF~~al~l~~~~~i~~~L~~~gI~Ps~~~~~~y~~~~i~~ai~~~~g~ 153 (206)
+.....++. .||+|||+|||||++.+.+|.+||++|++|++++|++++|+++||+| ++++|++++|++||++++|.
T Consensus 83 l~~~~~~~~-~fW~hEw~KHGTC~~~~~~q~~YF~~a~~l~~~~~~~~~L~~~gI~P---~~~~~t~~~I~~Ai~~~~g~ 158 (208)
T 1iyb_A 83 LACPSGTGS-AFWSHEWEKHGTCAENVFDQHGYFKKALDLKNQINLLEILQGAGIHP---DGGFYSLNSIKNAIRSAIGY 158 (208)
T ss_dssp CCSSCCCSH-HHHHHHHHHTGGGGTTTCCHHHHHHHHHHHHHHCCHHHHHHHTTCCS---SSCEEEHHHHHHHHHHHHSS
T ss_pred cccCCCCcc-hHHHhhccCCeeeCccccCHHHHHHHHHHHHHHcChHHHHHHCCccc---CCceEeHHHHHHHHHHHhCC
Confidence 974333334 89999999999999977799999999999999999999999999999 48899999999999999999
Q ss_pred CceEEeeeCCCCCCcEEEEEEEEecCCCceecCCCCCC-CCCCceEecCC
Q 042583 154 DPLLKCVKGDDGISHLKEVIICVDDQAQSFIQCAKQKD-RCYFDIMFDVP 202 (206)
Q Consensus 154 ~p~l~C~~~~~~~~~L~Ev~iC~~~~~~~~i~Cp~~~~-~C~~~i~~P~~ 202 (206)
.|.|+|.++.+|..+|.||+||||+++.++|+||.... .||+.|.||+|
T Consensus 159 ~p~l~C~~~~~~~~~L~Ev~iC~~~~~~~~i~C~~~~~~~C~~~i~~p~f 208 (208)
T 1iyb_A 159 APGIECNVDESGNSQLYQIYICVDGSGSNLIECPIFPRGKCGSSIEFPTF 208 (208)
T ss_dssp CCEEEEEECTTCCEEEEEEEEEEETTSSSBCCCSCCCCCCCCSEEECCCC
T ss_pred CeEEEEeeCCCCCeEEEEEEEEecCCCCeeecCCCCCCCCCCCCcCcCCC
Confidence 99999998777778999999999999766999998644 49999999987
No 2
>1vcz_A RNAse NGR3; hydrolase, ribonuclease; HET: 5GP; 1.80A {Nicotiana glutinosa} PDB: 1vd1_A* 1vd3_A*
Probab=100.00 E-value=4.1e-58 Score=382.09 Aligned_cols=181 Identities=31% Similarity=0.647 Sum_probs=156.3
Q ss_pred CCCCCccEEEEEEecccccccCCC-CCCC-----CCCcEEeeeecccc------------------CCCcchhhhcccCc
Q 042583 18 CDSSGFDHFWLVQVWPSGYCLQAN-CSQT-----SDRFIIHGLWAVNV------------------VDKTLPDLMRYWLP 73 (206)
Q Consensus 18 ~~~~~fD~~~l~l~W~p~~C~~~~-C~~p-----~~~ftIHGLWP~~~------------------~~~l~~~L~~~Wp~ 73 (206)
..+++||||+|||+|||+||..++ |..| ..+||||||||++. +++++++|+++||+
T Consensus 3 ~~~~~fDy~~l~l~Wpp~~C~~~~~cc~p~~~~p~~~ftIHGLWP~~~~g~~p~~C~~~~~~~~~~~~~l~~~L~~~Wp~ 82 (217)
T 1vcz_A 3 EFAQDFDFFYFVQQWPASYCDTRRSCCYPTTGKPDEDFSIHGLWPNYENGKWPQNCDRESSLDESEISDLISTMEKNWPS 82 (217)
T ss_dssp --CCSCSEEEEEEECHHHHSSSSSCCCCCTTCSCCSSCEEEEEEEECTTSCCCCCCCTTCCCCGGGGGGGHHHHHHHSCC
T ss_pred ccCCCccEEEEEEeCChhhcCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCCCCCCCccCCChhhhhhhhhhhhccCcc
Confidence 357999999999999999998875 4443 47999999999754 23456679999999
Q ss_pred CcCCCchhhHhHHhhhccceeecccCCCCHHHHHHHHHHHHHhCChHHHHhhCCCCCCCCCCCcccHHHHHHHHHHhhCC
Q 042583 74 LNENNLSRAENFWIYQWKKHGSAAKEFIQPRDYFQMALQLAKDTDLRNTLQNHGAVPILPDGGSYNKRDYKAAIKNKTGH 153 (206)
Q Consensus 74 l~~~~~~~~~~fW~hEW~KHGtCs~~~~~~~~YF~~al~l~~~~~i~~~L~~~gI~Ps~~~~~~y~~~~i~~ai~~~~g~ 153 (206)
+.....++. .||+|||+|||||++ .+|.+||++|++|++++|++++|+++||+|| +|++|++++|++||++++|.
T Consensus 83 l~~~~~~~~-~fW~hEw~KHGTC~~--~~~~~YF~~a~~l~~~~n~~~~L~~~gI~Ps--~g~~~t~~~I~~Ai~~~~g~ 157 (217)
T 1vcz_A 83 LACPSSDGV-RFWSHEWLKHGTCSA--LGERAYFQAALDFRKKSNLLENLKNAEITPR--NGEHYTLESIKKAIEEGVGH 157 (217)
T ss_dssp CSSSCCCSH-HHHHHHHHHTGGGTT--SCHHHHHHHHHHHHHHHCHHHHHHHTTCCCE--EEEEEEHHHHHHHHHHHHSS
T ss_pred cccCCCCcc-hHHhhhccCCeecCC--CCHHHHHHHHHHHHHHcccHHHHHHCCCccC--cCccccHHHHHHHHHHHHCC
Confidence 974333334 899999999999999 6999999999999999999999999999996 68899999999999999999
Q ss_pred CceEEeeeCCCCCCcEEEEEEEEecCCCceecCCCCCC--CCCCceEecCCC
Q 042583 154 DPLLKCVKGDDGISHLKEVIICVDDQAQSFIQCAKQKD--RCYFDIMFDVPP 203 (206)
Q Consensus 154 ~p~l~C~~~~~~~~~L~Ev~iC~~~~~~~~i~Cp~~~~--~C~~~i~~P~~~ 203 (206)
.|.|+|.++.+|..+|.||+||||+++..+|+||.... .|++.|.||++.
T Consensus 158 ~p~l~C~~~~~~~~~L~Ev~iC~~~~~~~~i~C~~~~~~~~C~~~i~~p~~~ 209 (217)
T 1vcz_A 158 SPYIECNVDTQGNHQIYQVYLCVDKTATDFIDCPIFPHGRGCGSKIEFPPFS 209 (217)
T ss_dssp CCEEEEEECTTSCEEEEEEEEEEETTSSSEECCSSCCCCCCCCSEEEECCC-
T ss_pred CeEEEEeecCCCCeEEEEEEEEecCCCCeeeeCCCCCCCCCCCCCeEEcCCC
Confidence 99999998777778999999999999766999997543 499999999984
No 3
>1ioo_A SF11-RNAse; SELF-incompatibility ribonuclease, hydrolase; HET: NAG BMA MAN; 1.55A {Nicotiana alata} SCOP: d.124.1.1
Probab=100.00 E-value=1e-57 Score=374.22 Aligned_cols=174 Identities=34% Similarity=0.679 Sum_probs=152.7
Q ss_pred CccEEEEEEecccccccCCCCCCC-CCCcEEeeeecccc-------C--C-------CcchhhhcccCcCcCCCc---hh
Q 042583 22 GFDHFWLVQVWPSGYCLQANCSQT-SDRFIIHGLWAVNV-------V--D-------KTLPDLMRYWLPLNENNL---SR 81 (206)
Q Consensus 22 ~fD~~~l~l~W~p~~C~~~~C~~p-~~~ftIHGLWP~~~-------~--~-------~l~~~L~~~Wp~l~~~~~---~~ 81 (206)
+||||+|||+|||+||..++|..+ +.+||||||||++. . . +++++|+++||++...+. +.
T Consensus 1 ~fDy~~l~l~Wpp~~C~~~~C~~~~p~~ftIHGLWP~~~~~~p~~C~~~~~~~~~~~~l~~~L~~~Wp~l~~~~~~~~~~ 80 (196)
T 1ioo_A 1 DFEYLQLVLTWPASFCYANHCERIAPNNFTIHGLWPDNVKTRLHNCKPKPTYSYFTGKMLNDLDKHWMQLKFEQDYGRTE 80 (196)
T ss_dssp CCSEEEEEEECHHHHHHHSCCSSCCCSSCEEEEEEEECSSSCCCSCSSCCCCCCCCHHHHHHHHHHTCCTTSCHHHHHHH
T ss_pred CceEEEEEeeCCHHHccCCCCCCCCCCCcEEeceEECCCCCCCCcCCCCCCcCchHHHHHHHHhccCCCCCccccccccc
Confidence 599999999999999998889886 78999999999874 1 1 357789999999986531 11
Q ss_pred hHhHHhhhccceeecccCCCCHHHHHHHHHHHHHhCChHHHHhhCCCCCCCCCCCcccHHHHHHHHHHhhCCCceEEeee
Q 042583 82 AENFWIYQWKKHGSAAKEFIQPRDYFQMALQLAKDTDLRNTLQNHGAVPILPDGGSYNKRDYKAAIKNKTGHDPLLKCVK 161 (206)
Q Consensus 82 ~~~fW~hEW~KHGtCs~~~~~~~~YF~~al~l~~~~~i~~~L~~~gI~Ps~~~~~~y~~~~i~~ai~~~~g~~p~l~C~~ 161 (206)
. .||+|||+|||||++.+++|.+||++|++|++++|++++|+++||+| +.+|++++|++||++++|..|.|+|.+
T Consensus 81 ~-~fW~hEw~KHGTC~~~~~~q~~YF~~a~~L~~~~n~~~~L~~~gI~P----~~~~t~~~I~~Ai~~~~g~~p~l~C~~ 155 (196)
T 1ioo_A 81 Q-PSWKYQYIKHGSCCQKRYNQNTYFGLALRLKDKFDLLRTLQTHRIIP----GSSYTFQDIFDAIKTVSQENPDIKCAE 155 (196)
T ss_dssp C-HHHHHHHHHTGGGCTTTCCHHHHHHHHHHHHHTCCHHHHHHHTTCCT----TEEECHHHHHHHHHHHHSSCCEEEEEC
T ss_pred c-hHHHhhCcCCcCcCCCcCCHHHHHHHHHHHHHHCCHHHHHHHCCCcc----CCCcCHHHHHHHHHHHhCCCeEEEeee
Confidence 3 79999999999999977799999999999999999999999999999 556999999999999999999999988
Q ss_pred CCCCCCcEEEEEEEEecCCCceecCCCCCCCC--CCceEecC
Q 042583 162 GDDGISHLKEVIICVDDQAQSFIQCAKQKDRC--YFDIMFDV 201 (206)
Q Consensus 162 ~~~~~~~L~Ev~iC~~~~~~~~i~Cp~~~~~C--~~~i~~P~ 201 (206)
+.+|..+|.||+||||+++..+|+||... .| +..|.||+
T Consensus 156 ~~~~~~~L~Ev~iC~~~~~~~~i~Cp~~~-~C~~~~~i~fp~ 196 (196)
T 1ioo_A 156 VTKGTPELYEIGICFTPNADSMFRCPQSD-TCDKTAKVLFRR 196 (196)
T ss_dssp SSTTCCEEEEEEEEECTTSSSEECCCCCC-CSCTTSCEEECC
T ss_pred cCCCCeEEEEEEEEEeCCCCEEeCCcCCC-CCCCCCCeecCC
Confidence 65556899999999999997799999754 39 45899985
No 4
>1sgl_A Trichomaglin; S-like ribonuclease, X-RAY sequence, MASS SPEC analysis, hydrolase; 2.20A {Trichosanthes lepiniana} SCOP: d.124.1.1
Probab=100.00 E-value=2.8e-57 Score=374.99 Aligned_cols=176 Identities=24% Similarity=0.475 Sum_probs=151.6
Q ss_pred CCCccEEEEEEecccccccCC--------CCCCC-CCCcEEeeeecccc-----------------CCCcchhhhcccCc
Q 042583 20 SSGFDHFWLVQVWPSGYCLQA--------NCSQT-SDRFIIHGLWAVNV-----------------VDKTLPDLMRYWLP 73 (206)
Q Consensus 20 ~~~fD~~~l~l~W~p~~C~~~--------~C~~p-~~~ftIHGLWP~~~-----------------~~~l~~~L~~~Wp~ 73 (206)
+++||||+|||+|||+||... .|..+ ..+||||||||++. +++++++|+++||+
T Consensus 2 ~~~fD~~~l~l~Wpp~~C~~~~~~~~~~~~C~~~~~~~ftIHGLWP~~~~g~~p~~C~~~~~~~~~~~~l~~~L~~~Wp~ 81 (209)
T 1sgl_A 2 EREFDYFILALQWAGTSCRSGGACCPYNGCCKADSPTQFTIHGLRPEYSGGERPSCCTGGSFDPDEIMPFFGKLVEYWPT 81 (209)
T ss_dssp --CCSEEEEEEEEHHHHTSSCCCCCTTBTTCSSSCCCCEEEEEEEECCCSSCCCCCCSCCCCCGGGGGGGHHHHHHHSCB
T ss_pred CCCceEEEEEEECCHHHhcCCccCCCCCCCCCCCCCCCcEEccccCCCCCCCCCCCCCCCcCCchhhhhHHHHHHccCcC
Confidence 579999999999999999864 38765 79999999999873 23467899999999
Q ss_pred CcCCC-----chhhHhHHhhhccceeecccCCC-CHHHHHHHHHHHHHhCChHHHHhhCCCCCCCCCCCcccHHHHHHHH
Q 042583 74 LNENN-----LSRAENFWIYQWKKHGSAAKEFI-QPRDYFQMALQLAKDTDLRNTLQNHGAVPILPDGGSYNKRDYKAAI 147 (206)
Q Consensus 74 l~~~~-----~~~~~~fW~hEW~KHGtCs~~~~-~~~~YF~~al~l~~~~~i~~~L~~~gI~Ps~~~~~~y~~~~i~~ai 147 (206)
+..+. .++. .||+|||+|||||++.++ +|.+||++|++|++++|++++|+++||+|+ .+++|++++|++||
T Consensus 82 l~~~~~~~~~~~~~-~fW~hEw~KHGTC~~~~~~~~~~YF~~a~~L~~~~~l~~~L~~~gI~P~--~g~~yt~~~I~~Ai 158 (209)
T 1sgl_A 82 YRCALEQSCNNRKE-ILWGQQYEKHGTCASPVIKGEWNYFKKTLKLFMKYNVDKALEDAGIVAS--NSKMYDLKDIVVAV 158 (209)
T ss_dssp SCSSCEECGGGCEE-CHHHHHHHHTGGGGTTTSCSHHHHHHHHHHHHHHTCHHHHHHHHTCCCC--SSCEEEHHHHHHHH
T ss_pred cccccccccCCCcc-hHHHHhhhcCccccccccccHHHHHHHHHHHHHHcChHHHHHHCCCcCC--CCccccHHHHHHHH
Confidence 96211 1113 799999999999999766 999999999999999999999999999997 68899999999999
Q ss_pred HHhhCCCceEEeeeCCCCCCcEEEEEEEEecCCCceecCCCCCCCCCCceEecCCCC
Q 042583 148 KNKTGHDPLLKCVKGDDGISHLKEVIICVDDQAQSFIQCAKQKDRCYFDIMFDVPPR 204 (206)
Q Consensus 148 ~~~~g~~p~l~C~~~~~~~~~L~Ev~iC~~~~~~~~i~Cp~~~~~C~~~i~~P~~~~ 204 (206)
++++|.+|.|+|.++ ++|.||+||||+++. +|+|+ ..++||+.|.||+++.
T Consensus 159 ~~~~g~~p~l~C~~~----~~L~Ev~iC~~~~~~-~i~C~-~~~~C~~~i~~p~~~~ 209 (209)
T 1sgl_A 159 ESAVGARPKLRCDEE----GLVQKLSLCFDKDFK-PRDCV-QVGSCPRYVSLPEIPD 209 (209)
T ss_dssp HHHHSSCCEEEECTT----SBEEEEEEEEETTCC-EECCC-CCCCSCSEEECCCCCC
T ss_pred HHHhCCCeEEEECCC----CeEEEEEEEeCCCcc-EeCCC-CCCCCCCCeEeCCCCC
Confidence 999999999999763 599999999999976 89995 3334999999999874
No 5
>1jy5_A CALSEPRRP; RNAse, alpha-beta protein, hydrolase; 2.05A {Calystegia sepium} SCOP: d.124.1.1
Probab=100.00 E-value=1.5e-56 Score=371.43 Aligned_cols=177 Identities=25% Similarity=0.505 Sum_probs=151.8
Q ss_pred CCCccEEEEEEecccccccCCC-------CC--CCCCCcEEeeeecccc-----------------CCCcchhhhcccCc
Q 042583 20 SSGFDHFWLVQVWPSGYCLQAN-------CS--QTSDRFIIHGLWAVNV-----------------VDKTLPDLMRYWLP 73 (206)
Q Consensus 20 ~~~fD~~~l~l~W~p~~C~~~~-------C~--~p~~~ftIHGLWP~~~-----------------~~~l~~~L~~~Wp~ 73 (206)
.++||||+|||+|||+||...+ |. .|..+||||||||++. +++++++|+++||+
T Consensus 2 ~~~fDy~~l~l~Wpp~~C~~~~~~c~~~~C~~~~~~~~ftIHGLWP~~~~g~~p~~C~~~~~~~~~i~~l~~~L~~~WP~ 81 (212)
T 1jy5_A 2 HKEFDYFTLALTWSGTECLSVKDSCPTNACSRSEVETGFTIKGLWPDYDDGTWPSCCEGAKYDQNEISILSNDLSKYWPS 81 (212)
T ss_dssp CCCCCEEEEEEEEHHHHTCC----CTTBGGGCTTSCSCEEEEEEEEECTTSCCCCSCSSCCCCGGGGGGGHHHHHHHSCB
T ss_pred CCCceEEEEEEEcCHHHhcCCCCCCCCccccCCCCCCccEEeeeecccCCCCCCCCCCCCCCChhhhHHHHHHHHhhCCc
Confidence 5899999999999999998753 32 2478999999999864 34577899999999
Q ss_pred CcCCCch-----hhHhHHhhhccceeecccCC-CCHHHHHHHHHHHHHhCChHHHHhhCCCCCCCCCCCcccHHHHHHHH
Q 042583 74 LNENNLS-----RAENFWIYQWKKHGSAAKEF-IQPRDYFQMALQLAKDTDLRNTLQNHGAVPILPDGGSYNKRDYKAAI 147 (206)
Q Consensus 74 l~~~~~~-----~~~~fW~hEW~KHGtCs~~~-~~~~~YF~~al~l~~~~~i~~~L~~~gI~Ps~~~~~~y~~~~i~~ai 147 (206)
+...+.+ .. .||+|||+|||||++.+ .+|.+||++|++|++++|++++|+++||+|| ++++|++++|++||
T Consensus 82 l~~~~~~~~~~~~~-~fW~hEw~KHGTC~~~~~~~~~~YF~~a~~l~~~~nl~~~L~~~gI~Ps--~g~~yt~~~I~~Ai 158 (212)
T 1jy5_A 82 YSCPSSSACGSFDA-SDLAYEWAKHGTCSSPVLGNQYEYFSTTLMLYFKYNISEILSESGYLPS--NTAEYKVEGIMSAI 158 (212)
T ss_dssp CCSSCEEETTEEES-SHHHHHHHHTGGGGTTTSCSHHHHHHHHHHHHHHSCHHHHHHTTTCCCC--SSCCEEHHHHHHHH
T ss_pred ccccccccccccch-hHHHHhhhhCceeCcccccCHHHHHHHHHHHHHhcCHHHHHHHcCCcCC--CCceEcHHHHHHHH
Confidence 9754321 12 69999999999999975 4999999999999999999999999999997 68899999999999
Q ss_pred HHhhCCCceEEeeeCCCCCCcEEEEEEEEecCCCceecCCCCCCCCCCceEecCCCCC
Q 042583 148 KNKTGHDPLLKCVKGDDGISHLKEVIICVDDQAQSFIQCAKQKDRCYFDIMFDVPPRT 205 (206)
Q Consensus 148 ~~~~g~~p~l~C~~~~~~~~~L~Ev~iC~~~~~~~~i~Cp~~~~~C~~~i~~P~~~~~ 205 (206)
++++|..|.|+|.+ +.|.||+||||+++. +||||...++|++.|.||+++.+
T Consensus 159 ~~~~g~~p~l~C~~-----~~l~ev~lC~~~~~~-~i~C~~~~~~C~~~i~~p~~~~~ 210 (212)
T 1jy5_A 159 QSALRVTPVVKCKS-----DAVEQVQICFDKTLQ-LQECPSTASTCPSLVSLPIKNTI 210 (212)
T ss_dssp HHHHSSCCEEEEET-----TEEEEEEEEECTTSC-EECCCCCCCCSCSEEBCCCCC--
T ss_pred HHhhCCCEEEEeCC-----CCcceEEEEEcCCCc-EecCCCCCCCCCCCEEeCCCCCC
Confidence 99999999999987 579999999999976 99999544459999999998764
No 6
>1ucd_A Ribonuclease MC; alpha plus beta, hydrolase; HET: U5P; 1.30A {Momordica charantia} SCOP: d.124.1.1 PDB: 1bk7_A* 1ucc_A* 1uca_A* 1v9h_A* 1j1f_A* 1ucg_A 1j1g_A*
Probab=100.00 E-value=1.4e-56 Score=365.92 Aligned_cols=169 Identities=30% Similarity=0.680 Sum_probs=148.9
Q ss_pred ccEEEEEEecccccccCC---CCCCC-CCCcEEeeeecccc----------------CCCcchhhhcccCcCcCCCchhh
Q 042583 23 FDHFWLVQVWPSGYCLQA---NCSQT-SDRFIIHGLWAVNV----------------VDKTLPDLMRYWLPLNENNLSRA 82 (206)
Q Consensus 23 fD~~~l~l~W~p~~C~~~---~C~~p-~~~ftIHGLWP~~~----------------~~~l~~~L~~~Wp~l~~~~~~~~ 82 (206)
||||+|||+|||+||..+ +|..| +.+||||||||+.. +++++++|+++||++...+. .
T Consensus 1 fDy~~l~l~Wpp~~C~~~~~~~C~~~~p~~ftIHGLWPn~~~~~p~~C~~~~~~~~~~~~l~~~L~~~Wp~l~~~~~--~ 78 (190)
T 1ucd_A 1 FDSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQQSGTSLTNCPGSPFDITKISHLQSQLNTLWPNVLRANN--Q 78 (190)
T ss_dssp CCEEEEEEECHHHHHHTCCSSCCGGGGCCSCEEEEEEEEETTEECCSCSCCCCCGGGGGGGHHHHHHHSCCSSSSCH--H
T ss_pred CcEEEEEEECCHHHhccCCCCCCCCCCCCCeEEEcCCCCCCCCCCCCCCcccCCccccchhhHHHHhcCCCcCCCCC--C
Confidence 899999999999999876 49774 69999999999522 23477899999999984332 3
Q ss_pred HhHHhhhccceeecccCCCCHHHHHHHHHHHHHhCChHHHHhhCCCCCCCCCCCcccHHHHHHHHHHhhCCCceEEeeeC
Q 042583 83 ENFWIYQWKKHGSAAKEFIQPRDYFQMALQLAKDTDLRNTLQNHGAVPILPDGGSYNKRDYKAAIKNKTGHDPLLKCVKG 162 (206)
Q Consensus 83 ~~fW~hEW~KHGtCs~~~~~~~~YF~~al~l~~~~~i~~~L~~~gI~Ps~~~~~~y~~~~i~~ai~~~~g~~p~l~C~~~ 162 (206)
.||+|||+|||||+.++++|.+||++|++|++++|++++|+++||+|+ ++.|++++|++||++++|.+|.|+|.++
T Consensus 79 -~fW~hEw~KHGTC~~~~~~~~~YF~~a~~l~~~~~~~~~L~~~~I~P~---~~~~t~~~I~~ai~~~~g~~p~l~C~~~ 154 (190)
T 1ucd_A 79 -QFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGALRPHAAGPN---GRTKSRQAIKGFLKAKFGKFPGLRCRTD 154 (190)
T ss_dssp -HHHHHHHHHTGGGGTTTCCHHHHHHHHHHHHHTCCHHHHHGGGTCSCS---SSEEEHHHHHHHHHHHHSSCCEEEEEEC
T ss_pred -chHHhccccCcEeCCCCCCHHHHHHHHHHHHHHcCHHHHHHHCCCCCC---CceEeHHHHHHHHHHHHCCCeEEEeccC
Confidence 899999999999998768999999999999999999999999999994 7779999999999999999999999987
Q ss_pred CC-CCCcEEEEEEEEecCCCceecCCCCCCCCCCceEe
Q 042583 163 DD-GISHLKEVIICVDDQAQSFIQCAKQKDRCYFDIMF 199 (206)
Q Consensus 163 ~~-~~~~L~Ev~iC~~~~~~~~i~Cp~~~~~C~~~i~~ 199 (206)
++ +.++|.||+||||+++..+|+||. ..|++.++|
T Consensus 155 ~~~~~~~L~Ev~iC~~~~~~~~i~Cp~--~~C~~~~~f 190 (190)
T 1ucd_A 155 PQTKVSYLVQVVACFAQDGSTLIDCTR--DTCGANFIF 190 (190)
T ss_dssp TTTCCEEEEEEEEEEETTSSSEECCCC--CCCCSEEEC
T ss_pred CCCCCcEEEEEEEEecCCCCeeccCCC--CCCCCCCCC
Confidence 54 457999999999999666999998 459998876
No 7
>3t0o_A Ribonuclease T2, ribonuclease 6; rnaset2, alpha/beta fold, RNA cleavage, hydrol; HET: NAG; 1.59A {Homo sapiens}
Probab=100.00 E-value=8.9e-56 Score=371.69 Aligned_cols=183 Identities=26% Similarity=0.623 Sum_probs=150.4
Q ss_pred CCCCccEEEEEEecccccccCC--CCCCCCCCcEEeeeecccc-------------CCCcchhhhcccCcCcCCCchhhH
Q 042583 19 DSSGFDHFWLVQVWPSGYCLQA--NCSQTSDRFIIHGLWAVNV-------------VDKTLPDLMRYWLPLNENNLSRAE 83 (206)
Q Consensus 19 ~~~~fD~~~l~l~W~p~~C~~~--~C~~p~~~ftIHGLWP~~~-------------~~~l~~~L~~~Wp~l~~~~~~~~~ 83 (206)
..++||||+|||||||+||... .|..|...||||||||++. +++++++|+++||++..+..++.
T Consensus 6 ~~~~fD~~~lv~qWppt~C~~~~~~C~~p~~~FTIHGLWP~~~~~C~~s~~f~~~~i~~l~~~L~~~WPdl~~~~~~~~- 84 (238)
T 3t0o_A 6 DNHEWKKLIMVQHWPETVCEKIQNDCRDPPDYWTIHGLWPDKSEGCNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRS- 84 (238)
T ss_dssp ----CCEEEEEEECHHHHCCSSSGGGTSCCSSCEEEEEEESSCCCCCTTSCCCGGGGGGGHHHHHHHSCCCSSCCSSTH-
T ss_pred CCCCCcEEEEEEECCCccccCCCCCCCCCccccEEccccccccCCCCCCcccchhhhhHHHHHHHhhCcccccCCCCch-
Confidence 5689999999999999999875 3998888999999999865 34678899999999974322223
Q ss_pred hHHhhhccceeecccC---CCCHHHHHHHHHHHHHhCChHHHHhhCCCCCCCCCCCcccHHHHHHHHHHhhCCCceEEee
Q 042583 84 NFWIYQWKKHGSAAKE---FIQPRDYFQMALQLAKDTDLRNTLQNHGAVPILPDGGSYNKRDYKAAIKNKTGHDPLLKCV 160 (206)
Q Consensus 84 ~fW~hEW~KHGtCs~~---~~~~~~YF~~al~l~~~~~i~~~L~~~gI~Ps~~~~~~y~~~~i~~ai~~~~g~~p~l~C~ 160 (206)
.||+|||+|||||++. +.+|.+||++|++|++++|++++|+++||+|+ +..|++++|++||++++|..|.|+|.
T Consensus 85 ~fW~hEW~KHGTC~~~~~~~~~q~~YF~~a~~L~~~~n~~~~L~~~gI~P~---~~~yt~~~I~~Ai~~~~g~~P~l~C~ 161 (238)
T 3t0o_A 85 RFWKHEWEKHGTCAAQVDALNSQKKYFGRSLELYRELDLNSVLLKLGIKPS---INYYQVADFKDALARVYGVIPKIQCL 161 (238)
T ss_dssp HHHHHHCCCCCHHHTTSGGGCSHHHHHHHHHHHHHHHCHHHHHHHTTCCCC---SSCEEHHHHHHHHHHHHSSCCEEEEE
T ss_pred HHHHHhhhcCceecCCccccccHHHHHHHHHHHHHHcccHHHHHhcCccCC---CCcccHHHHHHHHHHHHCCCeEEEEe
Confidence 8999999999999996 34899999999999999999999999999995 55899999999999999999999998
Q ss_pred eCCCC--CCcEEEEEEEEecCCCceecCCCCC------------------CC---CCC-ceEecCCCCC
Q 042583 161 KGDDG--ISHLKEVIICVDDQAQSFIQCAKQK------------------DR---CYF-DIMFDVPPRT 205 (206)
Q Consensus 161 ~~~~~--~~~L~Ev~iC~~~~~~~~i~Cp~~~------------------~~---C~~-~i~~P~~~~~ 205 (206)
++.++ .++|.||+||||+++..+||||... .+ |.+ -|+|||.+.|
T Consensus 162 ~~~~~~~~~~L~EV~iC~d~~~~~~idCp~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 230 (238)
T 3t0o_A 162 PPSQDEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLRVCEDGPVFYPPPKKT 230 (238)
T ss_dssp CCC---CCCEEEEEEEEEETTTCCEECCC--------------------CTTCEECCSSEEBCCCCC--
T ss_pred cCCCCCcccEEEEEEEEeecCCCEEecCCCCCCCCccccccccccccccCCceeecCCCCccCCCCccc
Confidence 76544 3589999999999666699999643 12 875 6899998876
No 8
>1iqq_A S3-RNAse; japanese PEAR, SELF-incompatibilit family ribonuclease, hydrolase; HET: NAG BMA MAN; 1.50A {Pyrus pyrifolia} SCOP: d.124.1.1
Probab=100.00 E-value=2e-54 Score=355.67 Aligned_cols=171 Identities=26% Similarity=0.523 Sum_probs=146.2
Q ss_pred ccEEEEEEecccccccCCC--CCCC-CCCcEEeeeecccc-------------C---CCcchhhhcccCcCcCCCchhhH
Q 042583 23 FDHFWLVQVWPSGYCLQAN--CSQT-SDRFIIHGLWAVNV-------------V---DKTLPDLMRYWLPLNENNLSRAE 83 (206)
Q Consensus 23 fD~~~l~l~W~p~~C~~~~--C~~p-~~~ftIHGLWP~~~-------------~---~~l~~~L~~~Wp~l~~~~~~~~~ 83 (206)
||||+|||+|||+||...+ |..+ ..+||||||||++. . ++++++|+++||++... .++.
T Consensus 1 fDy~~l~l~Wpp~~C~~~~~~C~~~~~~~ftIHGLWP~~~~g~~p~~C~~~~~~~~~~~l~~~L~~~Wp~~~~~-~~~~- 78 (200)
T 1iqq_A 1 YDYFQFTQQYQLAVCNSNRTLCKDPPDKLFTVHGLWPSNMVGPDPSKCPIKNIRKREKLLEHQLEIIWPNVFDR-TKNN- 78 (200)
T ss_dssp CCEEEEEEEEHHHHTTSSSSCCSSCCCSSEEEEEEEEECSSSSCCCSCCCSCCCCCCHHHHHHHHHHSCCSSCG-GGHH-
T ss_pred CeEEEEEEECChHHhcCCCCCCCCCCCCCeEEeecccccCCCCCCCCCCchhcCccchhhhhhhhccCCCcccC-CCCC-
Confidence 8999999999999998753 9875 67899999999875 1 23567899999999643 2224
Q ss_pred hHHhhhccceeecccC-CCCHHHHHHHHHHHH--HhCChHHHHhhCCCCCCCCCCCcccHHHHHHHHHHhh-CCCceEEe
Q 042583 84 NFWIYQWKKHGSAAKE-FIQPRDYFQMALQLA--KDTDLRNTLQNHGAVPILPDGGSYNKRDYKAAIKNKT-GHDPLLKC 159 (206)
Q Consensus 84 ~fW~hEW~KHGtCs~~-~~~~~~YF~~al~l~--~~~~i~~~L~~~gI~Ps~~~~~~y~~~~i~~ai~~~~-g~~p~l~C 159 (206)
.||+|||+|||||+.+ +++|.+||++|++|+ +++|++++|+++||+|+ ++.|++++|++||++++ |..|.|+|
T Consensus 79 ~fW~hEw~KHGTC~~~~~~~~~~YF~~a~~l~~~~k~n~~~~L~~~~I~P~---~~~~t~~~I~~Ai~~~~~g~~p~l~C 155 (200)
T 1iqq_A 79 LFWDKEWMKHGSCGYPTIDNENHYFETVIKMYISKKQNVSRILSKAKIEPD---GKKRALLDIENAIRNGADNKKPKLKC 155 (200)
T ss_dssp HHHHHHHHHTGGGSTTTSCSHHHHHHHHHHHHTTTCCCHHHHHHHTTCCSS---CCEECHHHHHHHHHTTTTTCCCEEEE
T ss_pred hHHHhhhhCCcCcCCcccCCHHHHHHHHHHHHhhcccCHHHHHHHcCCccC---CCeecHHHHHHHHHHhcCCCceEEEE
Confidence 8999999999999955 489999999999999 77999999999999995 78899999999999999 89999999
Q ss_pred eeCCCCCCcEEEEEEEEecCCCceecCCCC--C---CCCCC-ceEe
Q 042583 160 VKGDDGISHLKEVIICVDDQAQSFIQCAKQ--K---DRCYF-DIMF 199 (206)
Q Consensus 160 ~~~~~~~~~L~Ev~iC~~~~~~~~i~Cp~~--~---~~C~~-~i~~ 199 (206)
.++ .+..+|.||+||||+++.++|+||.. . ..||+ +|.|
T Consensus 156 ~~~-~~~~~L~Ev~iC~~~~~~~~i~C~~~~~~~~~~~Cp~~~i~y 200 (200)
T 1iqq_A 156 QKK-GTTTELVEITLCSDKSGEHFIDCPHPFEPISPHYCPTNNIKY 200 (200)
T ss_dssp EEE-TTEEEEEEEEEEECTTSSSEECCSCCCCTTSTTCCCSSCEEC
T ss_pred eeC-CCCeEEEEEEEEEECCCCeEEeCCCCCCCCCCCCCCccCcCC
Confidence 875 34579999999999998779999874 2 23986 7876
No 9
>1bol_A Protein (ribonuclease RH); ribonucleases, hydrolase; 2.00A {Rhizopus niveus} SCOP: d.124.1.1
Probab=100.00 E-value=3.2e-50 Score=335.72 Aligned_cols=161 Identities=24% Similarity=0.568 Sum_probs=138.1
Q ss_pred CCccEEEEEEecccccccCCCCCCCCCCcEEeeeecccc----C----------------------CCcchhhhcccCcC
Q 042583 21 SGFDHFWLVQVWPSGYCLQANCSQTSDRFIIHGLWAVNV----V----------------------DKTLPDLMRYWLPL 74 (206)
Q Consensus 21 ~~fD~~~l~l~W~p~~C~~~~C~~p~~~ftIHGLWP~~~----~----------------------~~l~~~L~~~Wp~l 74 (206)
..||||+|||+|+|++ .|..+||||||||++. . ++++++|+++||++
T Consensus 22 p~fd~~~l~q~W~p~~-------~p~~~fTIHGLWP~~~~g~~pp~~~C~~s~~~~~~~~~l~~~~~~l~~~L~~~WP~l 94 (222)
T 1bol_A 22 PEYGLVVLNMQWAPGY-------GPDNAFTLHGLWPDKCSGAYAPSGGCDSNRASSSIASVIKSKDSSLYNSMLTYWPSN 94 (222)
T ss_dssp CSSCEEEEEEECCTTS-------SCTTCCEEEEEEEECTTSCBCCTTCSCSTTCCSCHHHHHHHHCHHHHHHHHHHSCCT
T ss_pred CCCCeEEEEEecCCCC-------CCCcceEEcceeecCcCCCCCccCCCCCcccccchhhhhhccchHHHHHHhhcCCCc
Confidence 3499999999999997 3578999999999873 0 12345899999999
Q ss_pred cCCCchhhHhHHhhhccceeecccCC-----------CCHHHHHHHHHHHHHhCChHHHHhhCCCCCCCCCCCcccHHHH
Q 042583 75 NENNLSRAENFWIYQWKKHGSAAKEF-----------IQPRDYFQMALQLAKDTDLRNTLQNHGAVPILPDGGSYNKRDY 143 (206)
Q Consensus 75 ~~~~~~~~~~fW~hEW~KHGtCs~~~-----------~~~~~YF~~al~l~~~~~i~~~L~~~gI~Ps~~~~~~y~~~~i 143 (206)
...+ . .||+|||+|||||++.+ .++.+||++|++|++++|+.++|+++||+| +..|++++|
T Consensus 95 ~~~~---~-~fW~hEW~KHGTC~~~~~~~c~~~y~~~~~~~~YF~~al~L~~~~n~~~~L~~~gI~P----~~~yt~~~I 166 (222)
T 1bol_A 95 QGNN---N-VFWSHEWSKHGTCVSTYDPDCYDNYEEGEDIVDYFQKAMDLRSQYNVYKAFSSNGITP----GGTYTATEM 166 (222)
T ss_dssp TSCH---H-HHHHHHHHHTGGGCGGGSGGGCTTCCTTHHHHHHHHHHHHHHHHSCHHHHHHTTTCCS----SEEEEHHHH
T ss_pred cccc---c-HHHHhhhhcCeeeccccCccccccccccccHHHHHHHHHHHHHHcCcHHHHHHcCCCC----CCcCcHHHH
Confidence 7432 3 89999999999998743 268899999999999999999999999999 445999999
Q ss_pred HHHHHHhhCCCceEEeeeCCCCCCcEEEEEEEEecCC-CceecCCCCCC-CCCCceEecC
Q 042583 144 KAAIKNKTGHDPLLKCVKGDDGISHLKEVIICVDDQA-QSFIQCAKQKD-RCYFDIMFDV 201 (206)
Q Consensus 144 ~~ai~~~~g~~p~l~C~~~~~~~~~L~Ev~iC~~~~~-~~~i~Cp~~~~-~C~~~i~~P~ 201 (206)
++||++++|..|.|+|.+ ++|.||+|||++++ ..+++|+.... .||++|+||+
T Consensus 167 ~~Ai~~~~g~~p~l~C~~-----~~L~Ev~ic~~~~g~~~~~~~~~~~~~~C~~~i~~pp 221 (222)
T 1bol_A 167 QSAIESYFGAKAKIDCSS-----GTLSDVALYFYVRGRDTYVITDALSTGSCSGDVEYPT 221 (222)
T ss_dssp HHHHHHHHSSCCEEEEET-----TEEEEEEEEEEEETTTEEEEECCSCCCSCCSEEEECC
T ss_pred HHHHHHHhCCCeEEEECC-----CEEeEEEEEEEcCCCCCeEECCCCCCCCCCCCeEeCC
Confidence 999999999999999974 69999999999985 55899987643 3998999987
No 10
>2pqx_A Ribonuclease I; hydrolase; HET: MES; 1.42A {Escherichia coli} PDB: 2ea1_A* 2pqy_A* 2z70_A*
Probab=100.00 E-value=1.6e-48 Score=329.70 Aligned_cols=168 Identities=23% Similarity=0.436 Sum_probs=139.8
Q ss_pred CCCCCccEEEEEEecccccccCC---------CCCCC-----C-CCcEEeeeecccc-----------------------
Q 042583 18 CDSSGFDHFWLVQVWPSGYCLQA---------NCSQT-----S-DRFIIHGLWAVNV----------------------- 59 (206)
Q Consensus 18 ~~~~~fD~~~l~l~W~p~~C~~~---------~C~~p-----~-~~ftIHGLWP~~~----------------------- 59 (206)
..+++||||+|||+|||+||... +|..| . ..||||||||++.
T Consensus 6 ~~~~~fDy~~LalsWppsfC~~~~~~~~~~~~~C~~p~~~~~~~~~ftIHGLWP~~~~~~~~~g~~~~~~~~~~C~~~~~ 85 (245)
T 2pqx_A 6 KQYGDFDRYVLALSWQTGFCQSQHDRNRNERDECRLQTETTNKADFLTVHGLWPGLPKSVAARGVDERRWMRFGCATRPI 85 (245)
T ss_dssp SSSCCCCEEEEEEEEHHHHHHHHHHTTCCCCHHHHSCCCCSSGGGGEEEEEEEECCCHHHHTTTCCHHHHHHHGGGCTTT
T ss_pred CCCCCcceEEEEEecCHHHhCCCccccCCCccccCCcccCCCCCCceEEEecCCCCCCCccccccccccccccCcccCcc
Confidence 45789999999999999999863 28754 1 3399999999852
Q ss_pred -------------------CCCcchhhhcccCcCcCCCchhhHhHHhhhccceeecccCCCCHHHHHHHHHHHHHhCChH
Q 042583 60 -------------------VDKTLPDLMRYWLPLNENNLSRAENFWIYQWKKHGSAAKEFIQPRDYFQMALQLAKDTDLR 120 (206)
Q Consensus 60 -------------------~~~l~~~L~~~Wp~l~~~~~~~~~~fW~hEW~KHGtCs~~~~~~~~YF~~al~l~~~~~i~ 120 (206)
..+++++|+.+||++... + .||+|||+|||||++ ++|.+||++|++|++++|+.
T Consensus 86 ~~~~~~~~~~~C~~~~~~l~~~l~~~L~~~WP~~~~~-~----~fw~hEW~KHGTC~~--~~~~~YF~~a~~l~~~~n~~ 158 (245)
T 2pqx_A 86 PNLPEARASRMCSSPETGLSLETAAKLSEVMPGAGGR-S----CLERYEYAKHGACFG--FDPDAYFGTMVRLNQEIKES 158 (245)
T ss_dssp TCCCCCCGGGGGGSCCCCCCHHHHHHHHHHCTTSSTT-T----CHHHHHHHHHTGGGT--CCHHHHHHHHHHHHHHHHHS
T ss_pred cccccccccccccCccccCCHHHHHHHHHhCCCCCCc-c----hHHHHHhhhCCeecC--CCHHHHHHHHHHHHHHhccc
Confidence 012456899999999643 2 799999999999999 89999999999999999764
Q ss_pred ---HHHhhCCCCCCCCCCCcccHHHHHHHHHHhhCCCc----eEEeeeCCCCCCcEEEEEEEEecC-------CCceecC
Q 042583 121 ---NTLQNHGAVPILPDGGSYNKRDYKAAIKNKTGHDP----LLKCVKGDDGISHLKEVIICVDDQ-------AQSFIQC 186 (206)
Q Consensus 121 ---~~L~~~gI~Ps~~~~~~y~~~~i~~ai~~~~g~~p----~l~C~~~~~~~~~L~Ev~iC~~~~-------~~~~i~C 186 (206)
++|+.. .|++|++++|++||++++|..| .|+|.++ ..+|.||+||||++ +..+|+|
T Consensus 159 ~~~~~l~~~-------~g~~~t~~~I~~Ai~~~~g~~p~~~v~l~C~~~---~~~L~Ev~iC~~~~~~~~~~~~~~~i~c 228 (245)
T 2pqx_A 159 EAGKFLADN-------YGKTVSRRDFDAAFAKSWGKENVKAVKLTCQGN---PAYLTEIQISIKADAINAPLSANSFLPQ 228 (245)
T ss_dssp HHHHHHHHT-------TTSEEEHHHHHHHHHHHHCGGGGGGEEEEEETT---TTEEEEEEEEEEGGGTTSCCCTTSBCCC
T ss_pred hHHHHhhcC-------CCceEcHHHHHHHHHHHhCCCCCcceEEEECCC---CCEEEEEEEEEcccccCCCccccccccC
Confidence 568772 3889999999999999999876 9999863 36999999999999 5568999
Q ss_pred CCCCCCCCCceEecCCC
Q 042583 187 AKQKDRCYFDIMFDVPP 203 (206)
Q Consensus 187 p~~~~~C~~~i~~P~~~ 203 (206)
|.. ++||+.|+||++-
T Consensus 229 p~~-~~C~~~~~~~~~g 244 (245)
T 2pqx_A 229 PHP-GNCGKTFVIDKAG 244 (245)
T ss_dssp SCC-BSCCSEEECCCSC
T ss_pred CCC-CCCCCCeEeCCCC
Confidence 964 3499999999863
No 11
>3d3z_A Actibind; RNAse, hydrolase; HET: NAG D3Z; 1.70A {Aspergillus niger}
Probab=100.00 E-value=2.6e-47 Score=322.67 Aligned_cols=174 Identities=23% Similarity=0.480 Sum_probs=144.1
Q ss_pred CCCCCccEEEEEEecccccccCCCCCCCCCCcEEeeeecccc-------------C------------CCcchhhhcccC
Q 042583 18 CDSSGFDHFWLVQVWPSGYCLQANCSQTSDRFIIHGLWAVNV-------------V------------DKTLPDLMRYWL 72 (206)
Q Consensus 18 ~~~~~fD~~~l~l~W~p~~C~~~~C~~p~~~ftIHGLWP~~~-------------~------------~~l~~~L~~~Wp 72 (206)
+....-+.++++|.|+.. +|..|..+||||||||++. . ++++++|+++||
T Consensus 22 c~~~p~g~l~~tq~W~~~-----p~~~p~~~fTIHGLWP~~~~g~~p~~C~~s~~~~~i~~~l~~~~~~~ll~~L~~~Wp 96 (247)
T 3d3z_A 22 CFNSPGGSLLQTQFWDYD-----PSDGPSDSWTIHGLWPDNCDGTYQEYCDESREYSNITSILEAQNRTELLSYMKEYWP 96 (247)
T ss_dssp TBCCSCCEEEEEEECCBT-----TBCSCTTCCEEEEEEEECTTSCBCCCCCGGGCCSCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCCCCEEEEEeecCCC-----CCCCCccccEEeeeeccCCCCCCCCCCCCcccccchhhhhhhcchHHHHHHHHhhCc
Confidence 333445999999999975 4566789999999999874 1 123557999999
Q ss_pred cCcCCCchhhHhHHhhhccceeecccCC-----------CCHHHHHHHHHHHHHhCChHHHHhhCCCCCCCCCCCcccHH
Q 042583 73 PLNENNLSRAENFWIYQWKKHGSAAKEF-----------IQPRDYFQMALQLAKDTDLRNTLQNHGAVPILPDGGSYNKR 141 (206)
Q Consensus 73 ~l~~~~~~~~~~fW~hEW~KHGtCs~~~-----------~~~~~YF~~al~l~~~~~i~~~L~~~gI~Ps~~~~~~y~~~ 141 (206)
++.... ++. .||+|||+|||||++.+ .++.+||++|++|++++|+.++|+++||+|+ .+++|+++
T Consensus 97 ~l~~~~-~~~-~fW~hEW~KHGTC~~~~~~~C~~~y~~~~~~~~YF~~al~L~~k~n~~~~L~~~gI~P~--~~~tyt~~ 172 (247)
T 3d3z_A 97 DYEGAD-EDE-SFWEHEWNKHGTCINTIEPSCYTDYYAQEEVGDFFQQVVDLFKTLDSYTALSDAGITPS--EDATYKLS 172 (247)
T ss_dssp CTTCGG-GHH-HHHHHHHHHTGGGCGGGSGGGBSSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHTTCCCC--SSCCBCHH
T ss_pred cccCCC-Ccc-HHHHHhhhcCeeecccCCcccccccccccCHHHHHHHHHHHHHhcCcHHHHHHCCccCC--CCceECHH
Confidence 997521 223 89999999999998753 3678999999999999999999999999997 56789999
Q ss_pred HHHHHHHHhh-CCCceEEeeeCCCCCCcEEEEEEEEecCCC----ceecCCCCCC-CCCCc-eEecCCCCC
Q 042583 142 DYKAAIKNKT-GHDPLLKCVKGDDGISHLKEVIICVDDQAQ----SFIQCAKQKD-RCYFD-IMFDVPPRT 205 (206)
Q Consensus 142 ~i~~ai~~~~-g~~p~l~C~~~~~~~~~L~Ev~iC~~~~~~----~~i~Cp~~~~-~C~~~-i~~P~~~~~ 205 (206)
+|++||++++ |..|.|+|.+ ++|.||+||||+++. .+++|+.... .||.+ |+||++...
T Consensus 173 ~I~~Ai~~~~~g~~p~l~C~~-----~~L~Ev~iC~~~~~~~~~~~~~~~~~~~~~~C~~~~I~~pp~~~~ 238 (247)
T 3d3z_A 173 DIEDALAAIHDGYPPYVGCED-----GALSQLYYYFNVKGSAIGGTYVASERLEDSNCKDSGIKYPPKYSS 238 (247)
T ss_dssp HHHHHHHTTTTTCCCEEEEET-----TEEEEEEEEEEEESCTTTSEEEECCCSSCBSSCSSCBBCCCTTCC
T ss_pred HHHHHHHHhcCCCCeEEEeCC-----CEEEEEEEEEecCCCccCCceeECCCCCCCCCCCCceEeCCCCCC
Confidence 9999999999 9999999974 799999999999873 4788887543 39985 999998643
No 12
>4dvk_A E(RNS) glycoprotein; T2 ribonuclease, virus envelope glycoprotein, viral protein; HET: NAG BMA MAN; 2.21A {Bovine viral diarrhea virus} PDB: 4dw5_A* 4dvl_A* 4dvn_A* 4dw3_A* 4dw4_A* 4dwc_A* 4dwa_A* 4dw7_A*
Probab=99.81 E-value=8.4e-21 Score=149.10 Aligned_cols=59 Identities=12% Similarity=0.249 Sum_probs=50.0
Q ss_pred CCCcEEeeeecccc----------------CCCcchhhhcccCcCcCCCchhhHhHHhhhccceeecccCCCCHHHHHHH
Q 042583 46 SDRFIIHGLWAVNV----------------VDKTLPDLMRYWLPLNENNLSRAENFWIYQWKKHGSAAKEFIQPRDYFQM 109 (206)
Q Consensus 46 ~~~ftIHGLWP~~~----------------~~~l~~~L~~~Wp~l~~~~~~~~~~fW~hEW~KHGtCs~~~~~~~~YF~~ 109 (206)
...||||||||++. +++++++|++ |+|... .||+|||+|||||+. ++|.+||..
T Consensus 24 ~~~FTIHGLWPdN~~gt~PsnC~~~fd~~~I~dLl~~Ldk--PdL~~~------~FWeHEWnKHGTCS~--ynQe~YFdL 93 (165)
T 4dvk_A 24 GVNRSLHGIWPEKICTGVPSHLATDTELKAIHGMMDASEK--TNYTCC------RLQRHEWNKHGWCNW--YNIEPWILL 93 (165)
T ss_dssp TCCEEEEEEECSCCCCSCCSSCCCHHHHHTSTTCCCSCGG--GTSCSS------HHHHHHHHHHTHHHH--SSHHHHHHH
T ss_pred CCceEEEeeeCCCCCCCCccccCcccchhhHHHHHHhhcC--CCCCch------HHHHHHHHcCCccCC--CCHHHHHHH
Confidence 67899999999983 4567788887 888643 699999999999998 999999998
Q ss_pred HHHHH
Q 042583 110 ALQLA 114 (206)
Q Consensus 110 al~l~ 114 (206)
+-+.-
T Consensus 94 ~~~a~ 98 (165)
T 4dvk_A 94 MNKTQ 98 (165)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87654
No 13
>2ciw_A Chloroperoxidase; oxidoreductase, heme, iron, chloride, manganese, pyrrolidone carboxylic acid, glycoprotein, metal-binding; HET: NAG BMA MAN HEM; 1.15A {Caldariomyces fumago} SCOP: a.39.3.1 a.39.3.1 PDB: 1cpo_A* 2civ_A* 2cix_A* 2ciy_A* 2ciz_A* 2cj0_A* 2cj1_A* 2cj2_A* 2cpo_A* 2j18_A* 2j19_A* 2j5m_A*
Probab=79.45 E-value=0.9 Score=38.72 Aligned_cols=36 Identities=31% Similarity=0.473 Sum_probs=31.1
Q ss_pred ChHHHHhhCCCCCCCCCCCcccHHHHHHHHHHhhCCCc
Q 042583 118 DLRNTLQNHGAVPILPDGGSYNKRDYKAAIKNKTGHDP 155 (206)
Q Consensus 118 ~i~~~L~~~gI~Ps~~~~~~y~~~~i~~ai~~~~g~~p 155 (206)
..+++|+++|+.|. +|+.++..++..|+++++|..+
T Consensus 31 PgLNaLANHGyLpR--~G~nit~~~l~~al~~~~n~~~ 66 (299)
T 2ciw_A 31 PALNALANHGYIPH--DGRAISRETLQNAFLNHMGIAN 66 (299)
T ss_dssp HHHHHHHHTTSSCT--TCEEECHHHHHHHHHHHHCBCH
T ss_pred HHHHHHHhcCCcCC--CCCccCHHHHHHHHHHhcCCCH
Confidence 34678999999998 7888999999999999998653
No 14
>3tl8_B Effector protein hopab2; plant immunity, solanum lycopersicum, triggered immunity, bacterial pathogenesis, transferase-LIG complex; HET: TPO; 2.50A {Pseudomonas syringae PV}
Probab=36.97 E-value=37 Score=24.34 Aligned_cols=38 Identities=29% Similarity=0.381 Sum_probs=26.7
Q ss_pred ChHHHHhhCCCCCCCCCCCc---ccHHHHHHHHHHhhCCCc
Q 042583 118 DLRNTLQNHGAVPILPDGGS---YNKRDYKAAIKNKTGHDP 155 (206)
Q Consensus 118 ~i~~~L~~~gI~Ps~~~~~~---y~~~~i~~ai~~~~g~~p 155 (206)
||..+|+..||.|+.+.+.. -.+-++..||...+|.+|
T Consensus 74 Di~raL~~VGI~P~id~~~SLv~~PLlnL~vALnR~Lg~rp 114 (117)
T 3tl8_B 74 DIGSALQNVGINPSIDLGESLVQHPLLNLNVALNRMLGLRP 114 (117)
T ss_dssp HHHHHHHHTTCCCCCCCCSCBSCCHHHHHHHHHHHHTC---
T ss_pred HHHHHHHhCCCCCCCcchHHHhhchHHHHHHHHHHHhccCc
Confidence 45668999999997443332 367889999999998766
No 15
>3oqg_A HPY188I; endonuclease-DNA complex, restriction enzyme, HPY188I, inter GIY-YIG nuclease, catalytic mechanism; HET: DNA; 1.75A {Helicobacter pylori} PDB: 3or3_A
Probab=35.11 E-value=11 Score=28.27 Aligned_cols=20 Identities=20% Similarity=0.557 Sum_probs=16.1
Q ss_pred HhhhccceeecccCCCCHHHHHHHH
Q 042583 86 WIYQWKKHGSAAKEFIQPRDYFQMA 110 (206)
Q Consensus 86 W~hEW~KHGtCs~~~~~~~~YF~~a 110 (206)
=+-||+|.|||+. ..||-.-
T Consensus 101 gk~~yrkngtc~t-----tnyfvlq 120 (180)
T 3oqg_A 101 GKVEYRKNGTCST-----TNYFVLQ 120 (180)
T ss_dssp CCHHHHHHTCSCH-----HHHHHHH
T ss_pred cceeeecCCcccc-----chHHHHH
Confidence 3579999999987 7899543
No 16
>3ktp_B Trinucleotide repeat-containing gene 6C protein; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding; 1.50A {Homo sapiens}
Probab=32.04 E-value=10 Score=19.47 Aligned_cols=9 Identities=22% Similarity=0.696 Sum_probs=7.1
Q ss_pred Eeccccccc
Q 042583 30 QVWPSGYCL 38 (206)
Q Consensus 30 l~W~p~~C~ 38 (206)
.+|||+|+-
T Consensus 4 ~sWpPef~p 12 (22)
T 3ktp_B 4 INWPPEFHP 12 (26)
T ss_pred ccCCccccc
Confidence 579999884
No 17
>1y07_A Desulfoferrodoxin (RBO); beta-sheet, iron binding, oxidoreductase; 1.55A {Treponema pallidum subsp}
Probab=27.68 E-value=9.9 Score=28.07 Aligned_cols=6 Identities=50% Similarity=1.802 Sum_probs=5.2
Q ss_pred Eeeeec
Q 042583 51 IHGLWA 56 (206)
Q Consensus 51 IHGLWP 56 (206)
+||||=
T Consensus 121 lHGLW~ 126 (128)
T 1y07_A 121 LHGVWS 126 (128)
T ss_dssp TTEEEE
T ss_pred CcCcEE
Confidence 899994
No 18
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=27.59 E-value=9.9 Score=27.96 Aligned_cols=8 Identities=50% Similarity=1.074 Sum_probs=6.0
Q ss_pred EEeeeecc
Q 042583 50 IIHGLWAV 57 (206)
Q Consensus 50 tIHGLWP~ 57 (206)
++||||=+
T Consensus 117 NlHGLW~~ 124 (126)
T 1vzi_A 117 NIHGHWKA 124 (126)
T ss_dssp TTTEEEEE
T ss_pred cccceEEe
Confidence 47999953
No 19
>1dqi_A SOR, superoxide reductase; non-heme iron protein, immunoglobulin-like (IG) beta barrel fold, oxidoreductase; 1.70A {Pyrococcus furiosus} SCOP: b.1.13.1 PDB: 1do6_A 1dqk_A 2hvb_A
Probab=25.60 E-value=13 Score=27.33 Aligned_cols=8 Identities=63% Similarity=1.240 Sum_probs=6.1
Q ss_pred EEeeeecc
Q 042583 50 IIHGLWAV 57 (206)
Q Consensus 50 tIHGLWP~ 57 (206)
.|||||=+
T Consensus 112 NlHGLW~~ 119 (124)
T 1dqi_A 112 NIHGLWEN 119 (124)
T ss_dssp TTTEEEEE
T ss_pred cccCCEEe
Confidence 47999954
No 20
>2lf6_A Effector protein hopab1; type III effector, structural genomics, PSI-biology, protein structure initiative; NMR {Pseudomonas syringae PV}
Probab=23.53 E-value=35 Score=23.89 Aligned_cols=38 Identities=26% Similarity=0.417 Sum_probs=27.2
Q ss_pred ChHHHHhhCCCCCCCCCCCc---ccHHHHHHHHHHhhCCCc
Q 042583 118 DLRNTLQNHGAVPILPDGGS---YNKRDYKAAIKNKTGHDP 155 (206)
Q Consensus 118 ~i~~~L~~~gI~Ps~~~~~~---y~~~~i~~ai~~~~g~~p 155 (206)
||..+|+..||.|+.+.+.+ -++-++..||....|.+|
T Consensus 57 Di~raL~~vGI~p~id~~~Slv~~PLlnL~vaL~R~l~~R~ 97 (101)
T 2lf6_A 57 DLRRALESVGINPFIPEELSLVDHPVLNFSAALNRMLASRQ 97 (101)
T ss_dssp HHHHHHHHHTCCSCCCTTTTTTSSTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCCCCCCcchHHHhhchHHHHHHHHHHHhccCc
Confidence 45668999999997433332 367788889988877554
No 21
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=23.22 E-value=1.4e+02 Score=23.34 Aligned_cols=41 Identities=10% Similarity=0.129 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhCChHHHHhhCCCCCCCCCCCcccHHHHHHHHHHhhC
Q 042583 103 PRDYFQMALQLAKDTDLRNTLQNHGAVPILPDGGSYNKRDYKAAIKNKTG 152 (206)
Q Consensus 103 ~~~YF~~al~l~~~~~i~~~L~~~gI~Ps~~~~~~y~~~~i~~ai~~~~g 152 (206)
+..|.... ...+|..+.-+.-|+ |-.+|.+||++++++.+.
T Consensus 91 Al~yl~~~---~~~id~~~Fe~~cGV------GV~VT~EqI~~~V~~~i~ 131 (187)
T 3tl4_X 91 AFKYVKAN---GEASTKMGMNENSGV------GIEITEDQVRNYVMQYIQ 131 (187)
T ss_dssp HHHHHHHH---GGGCCHHHHHHTTTT------TCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhC---CCCCCHHHHHHHCCC------CeEeCHHHHHHHHHHHHH
Confidence 34454433 355788888888897 889999999999998763
Done!