Citrus Sinensis ID: 042584

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390
MENRAFPANQPPTYANLITILSIDGGGIRGIIPGVILAYLESQLQELDGQDARLADYFDVIAGTSTGGLITAMLTAPKEQNRPMSAAKDIVPFYIRHGPKIFPQLRALMGSKYDGKYLHKVIKEDLKDTKLHQTLTNVVIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPAYYFENPDEHGTLKEFNLIDGGVAANNPTLVAICEVTKHILKNPDFCQINPLDYTRFLVISLGTGSKRSEHKYNAKMASRWGVINWLYDNGDTPLLDCYGQAIGDMVDYHISVVFQALQSEDNYLRIDDDTLQGDLSSIDLTTPENSENLVRAGEALLKKPVSRINLDTGLYEPIENGSAGTNEEALKRFAKMLSDERKLRESKSSR
cccccccccccccccccEEEEEEEcccHHcHHHHHHHHHHHHHHHHHHcccccccccccEEEEccHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHccccccccccccEEEEcccccccccEEEccccccccccccccHHHHHHHHccccccccccccccccccccccccEEEEHHHccccHHHHHHHHHHHHHHcccccccccccccccEEEEEEccccccccccHHHHHHccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccc
ccccccccccccccccEEEEEEEcccccccHHHHHHHHHHHHHHHHcccccccHHHHEEEEccccHHHHHHHHHHcccccccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccHHHHcccEEEEcccHHHcccEEEEcccHcccccccccHHHHHHHccccccccccEEEEEccccccEEEEEEEcccHHcccHHHHHHHHHHHHHHcccccccccccccccEEEEEEccccccccccccHHHHHHcccHHHHcccccccHHHHHHHcHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHccccEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccc
menrafpanqpptyaNLITILsidgggirgiIPGVILAYLESQLQELDGQDARLADYFDVIAGTSTGGLITAMltapkeqnrpmsaakdivpfyirhgpkifPQLRALmgskydgkYLHKVIKEDlkdtklhqtltnvviptfdikklqptifssfqvaaspdldaqLADIAigtsaaptyfpayyfenpdehgtlkefnlidggvaannpTLVAICEVTKHilknpdfcqinpldyTRFLVISLgtgskrsehKYNAKMASRWGVINWlydngdtplldcygqaIGDMVDYHISVVFQALqsednylridddtlqgdlssidlttpenseNLVRAGEALLkkpvsrinldtglyepiengsagtNEEALKRFAKMLSDERKLRESKSSR
menrafpanqpptyANLITILSIDGGGIRGIIPGVILAYLESQLQELDGQDARLADYFDVIAGTSTGGLITAMLTapkeqnrpmsAAKDIVPFYIRHGPKIFPQLRALMGSKYDGKYLHKVIKEdlkdtklhqTLTNVVIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPAYYFENPDEHGTLKEFNLIDGGVAANNPTLVAICEVTKHILKNPDFCQINPLDYTRFLVISLGtgskrsehKYNAKMASRWGVINWLYDNGDTPLLDCYGQAIGDMVDYHISVVFQALQSEDNYLRIDDDTLQGDLSSidlttpenseNLVRAGeallkkpvsrinldtglyepiengsagtneeALKRFAKmlsderklreskssr
MENRAFPANQPPTYANLITILSidgggirgiipgviLAYLESQLQELDGQDARLADYFDVIAGTSTGGLITAMLTAPKEQNRPMSAAKDIVPFYIRHGPKIFPQLRALMGSKYDGKYLHKVIKEDLKDTKLHQTLTNVVIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPAYYFENPDEHGTLKEFNLIDGGVAANNPTLVAICEVTKHILKNPDFCQINPLDYTRFLVISLGTGSKRSEHKYNAKMASRWGVINWLYDNGDTPLLDCYGQAIGDMVDYHISVVFQALQSEDNYLRIDDDTLQGDLSSIDLTTPENSENLVRAGEALLKKPVSRINLDTGLYEPIENGSAGTNEEALKRFAKMLSDERKLRESKSSR
************TYANLITILSIDGGGIRGIIPGVILAYLESQLQELDGQDARLADYFDVIAGTSTGGLITAMLTA**********AKDIVPFYIRHGPKIFPQLRALMGSKYDGKYLHKVIKEDLKDTKLHQTLTNVVIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPAYYFENPDEHGTLKEFNLIDGGVAANNPTLVAICEVTKHILKNPDFCQINPLDYTRFLVISLGTGSKRSEHKYNAKMASRWGVINWLYDNGDTPLLDCYGQAIGDMVDYHISVVFQALQSEDNYLRIDDDTLQ***********************LLKKPVSRINLDTGLY***********************************
***************NLITILSIDGGGIRGIIPGVILAYLESQLQE*DGQDARLADYFDVIAGTSTGGLITAMLTAPKEQNRPMSAAKDIVPFYIRHGPKIFPQLRALMGSKYDGKYLHKVIKEDLKDTKLHQTLTNVVIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPAYYFENPDEHGTLKEFNLIDGGVAANNPTLVAICEVTKHILKNPDFCQINPLDYTRFLVISLGTGSKRSE****AKMASRWGVINWLYDNGDTPLLDCYGQAIGDMVDYHISVVFQALQSEDNYLRIDDDTLQGDLSSIDLTTPENSENLVRAGEALLKKPVSRINLDTGLYEPIEN*S*GTNEEALKRFAKMLS************
MENRAFPANQPPTYANLITILSIDGGGIRGIIPGVILAYLESQLQELDGQDARLADYFDVIAGTSTGGLITAMLTAPKEQNRPMSAAKDIVPFYIRHGPKIFPQLRALMGSKYDGKYLHKVIKEDLKDTKLHQTLTNVVIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPAYYFENPDEHGTLKEFNLIDGGVAANNPTLVAICEVTKHILKNPDFCQINPLDYTRFLVISLGTGSKRSEHKYNAKMASRWGVINWLYDNGDTPLLDCYGQAIGDMVDYHISVVFQALQSEDNYLRIDDDTLQGDLSSIDLTTPENSENLVRAGEALLKKPVSRINLDTGLYEPIENGSAGTNEEALKRFAKMLS************
*********QPPTYANLITILSIDGGGIRGIIPGVILAYLESQLQELDGQDARLADYFDVIAGTSTGGLITAMLTAPKEQNRPMSAAKDIVPFYIRHGPKIFPQLRALMGSKYDGKYLHKVIKEDLKDTKLHQTLTNVVIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPAYYFENPDEHGTLKEFNLIDGGVAANNPTLVAICEVTKHILKNPDFCQINPLDYTRFLVISLGTGSKRSEHKYNAKMASRWGVINWLYDNGDTPLLDCYGQAIGDMVDYHISVVFQALQSEDNYLRIDDDTLQGDLSSIDLTTPENSENLVRAGEALLKKPVSRINLDTGLYEPIENGSAGTNEEALKRFAKMLSDERKLR******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MENRAFPANQPPTYANLITILSIDGGGIRGIIPGVILAYLESQLQELDGQDARLADYFDVIAGTSTGGLITAMLTAPKEQNRPMSAAKDIVPFYIRHGPKIFPQLRALMGSKYDGKYLHKVIKEDLKDTKLHQTLTNVVIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPAYYFENPDEHGTLKEFNLIDGGVAANNPTLVAICEVTKHILKNPDFCQINPLDYTRFLVISLGTGSKRSEHKYNAKMASRWGVINWLYDNGDTPLLDCYGQAIGDMVDYHISVVFQALQSEDNYLRIDDDTLQGDLSSIDLTTPENSENLVRAGEALLKKPVSRINLDTGLYEPIENGSAGTNEEALKRFAKMLSDERKLRESKSSR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query390 2.2.26 [Sep-21-2011]
Q2MY58387 Patatin group A-3 OS=Sola N/A no 0.933 0.940 0.470 1e-94
Q3YJT2386 Patatin-2-Kuras 2 OS=Sola N/A no 0.920 0.930 0.492 5e-91
Q8LPW4386 Patatin-17 OS=Solanum car N/A no 0.933 0.943 0.492 6e-91
P15478386 Patatin-T5 OS=Solanum tub N/A no 0.920 0.930 0.486 1e-90
Q3YJT3374 Patatin-2-Kuras 1 OS=Sola N/A no 0.920 0.959 0.489 2e-90
Q42502386 Patatin-2-Kuras 3 OS=Sola N/A no 0.920 0.930 0.486 5e-90
Q2MY37386 Patatin-14 OS=Solanum tub N/A no 0.910 0.919 0.497 9e-90
Q2MY51386 Patatin group M-3 OS=Sola N/A no 0.910 0.919 0.494 2e-89
Q2MY52386 Patatin group M-2 OS=Sola N/A no 0.910 0.919 0.494 3e-89
P11768386 Patatin group M-1 OS=Sola N/A no 0.910 0.919 0.494 3e-89
>sp|Q2MY58|PATA3_SOLTU Patatin group A-3 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function desciption
 Score =  346 bits (888), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 183/389 (47%), Positives = 248/389 (63%), Gaps = 25/389 (6%)

Query: 8   ANQPPTYANL---ITILSIDGGGIRGIIPGVILAYLESQLQELDGQ-DARLADYFDVIAG 63
           A    T+A+L   +T+LSIDGGG++GIIPG IL +LE QLQ++D   DARLADYFDVI G
Sbjct: 16  ATTSSTFASLEEMVTVLSIDGGGVKGIIPGTILEFLEGQLQKMDNNADARLADYFDVIGG 75

Query: 64  TSTGGLITAMLTAPKEQNRPMSAAKDIVPFYIRHGPKIF-PQLRALMGSKYDGKYLHKVI 122
           TSTGGL+TAM+T P E NRP +AA +IVPFY  HGP IF        G KYDGKYL +V+
Sbjct: 76  TSTGGLLTAMITTPNENNRPFAAANEIVPFYFEHGPHIFNSSTGQFFGPKYDGKYLMQVL 135

Query: 123 KEDLKDTKLHQTLTNVVIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYF 182
           +E L +T++HQ LT V I +FDIK  +P IF+   +A SP+LDA++ DI   T+AAPTYF
Sbjct: 136 QEKLGETRVHQALTEVAISSFDIKTNKPVIFTKSNLAKSPELDAKMYDICYSTAAAPTYF 195

Query: 183 PAYYFENPDEHGTLKEFNLIDGGVA-ANNPTLVAICEVTKHILKNPDFCQINPLDYTRFL 241
           P +YF     +G   EFNL+DG VA   +P L+++   T+   ++P F  I  L+Y + L
Sbjct: 196 PPHYFATNTINGDKYEFNLVDGAVATVADPALLSVSVATRRAQEDPAFASIRSLNYKKML 255

Query: 242 VISLGTGSKRSEHK-YNAKMASRWGVINWLYDNGDTPLLDCYGQAIGDMVDYHISVVFQA 300
           ++SLGTG+     K + A+  ++WG + W+       +      A   M DY++S VFQ 
Sbjct: 256 LLSLGTGTTSEFDKTHTAEETAKWGALQWML-----VIQQMTEAASSYMTDYYLSTVFQD 310

Query: 301 LQSEDNYLRIDDDTLQGDLSSIDLTTPENSENLVRAGEALLKKPVSRINLDTGLYEPIEN 360
           L S++NYLR+ ++ L G  +  D  +  N E L + GE LLKKPVS+ N +         
Sbjct: 311 LHSQNNYLRVQENALTGTTTKADDASEANMELLAQVGENLLKKPVSKDNPE--------- 361

Query: 361 GSAGTNEEALKRFAKMLSDERKLRESKSS 389
               T EEALKRFAK+LSD +KLR +K+S
Sbjct: 362 ----TYEEALKRFAKLLSDRKKLRANKAS 386
Probable lipolytic acyl hydrolase (LAH), an activity which is thought to be involved in the response of tubers to pathogens.
Solanum tuberosum (taxid: 4113)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: -
>sp|Q3YJT2|PT2K2_SOLTU Patatin-2-Kuras 2 OS=Solanum tuberosum GN=pat2-k2 PE=2 SV=1 Back     alignment and function description
>sp|Q8LPW4|PAT17_SOLCD Patatin-17 OS=Solanum cardiophyllum PE=1 SV=1 Back     alignment and function description
>sp|P15478|PATT5_SOLTU Patatin-T5 OS=Solanum tuberosum PE=1 SV=1 Back     alignment and function description
>sp|Q3YJT3|PT2K1_SOLTU Patatin-2-Kuras 1 OS=Solanum tuberosum GN=pat2-k1 PE=1 SV=1 Back     alignment and function description
>sp|Q42502|PT2K3_SOLTU Patatin-2-Kuras 3 OS=Solanum tuberosum GN=pat2-k3 PE=1 SV=1 Back     alignment and function description
>sp|Q2MY37|PAT14_SOLTU Patatin-14 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q2MY51|PATM3_SOLTU Patatin group M-3 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q2MY52|PATM2_SOLTU Patatin group M-2 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|P11768|PATM1_SOLTU Patatin group M-1 OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query390
225458559406 PREDICTED: patatin group A-3 [Vitis vini 0.989 0.950 0.682 1e-156
224096778407 predicted protein [Populus trichocarpa] 0.969 0.928 0.678 1e-151
359492610406 PREDICTED: patatin group A-3-like [Vitis 0.989 0.950 0.69 1e-151
359492618411 PREDICTED: patatin group A-3-like [Vitis 0.987 0.936 0.684 1e-150
359492616406 PREDICTED: patatin group A-3-like [Vitis 0.987 0.948 0.681 1e-150
225458549406 PREDICTED: patatin group A-3 [Vitis vini 0.989 0.950 0.68 1e-150
302142355423 unnamed protein product [Vitis vinifera] 0.987 0.910 0.681 1e-150
302142354 849 unnamed protein product [Vitis vinifera] 0.989 0.454 0.677 1e-150
296082439432 unnamed protein product [Vitis vinifera] 0.971 0.877 0.669 1e-149
225438666407 PREDICTED: patatin group A-3-like [Vitis 0.969 0.928 0.671 1e-149
>gi|225458559|ref|XP_002282523.1| PREDICTED: patatin group A-3 [Vitis vinifera] gi|302142346|emb|CBI19549.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 273/400 (68%), Positives = 318/400 (79%), Gaps = 14/400 (3%)

Query: 1   MENRAFPANQPPTYANLITILSIDGGGIRGIIPGVILAYLESQLQELDGQDARLADYFDV 60
           ME    P  QPPTY NL+TILSIDG GIRGIIP  ILA LESQLQELDG DAR+ADYFDV
Sbjct: 1   MEKSLLPQIQPPTYGNLVTILSIDGRGIRGIIPATILACLESQLQELDGDDARIADYFDV 60

Query: 61  IAGTSTGGLITAMLTAPKEQNRPMSAAKDIVPFYIRHGPKIFPQ-----------LRALM 109
           IAGTSTGGL+TAMLTAP ++ RP+ AAKDI PFY+ HGPKIFP             R+++
Sbjct: 61  IAGTSTGGLVTAMLTAPNDEKRPLFAAKDIKPFYLEHGPKIFPHRRGIFGWIMNIFRSIV 120

Query: 110 GSKYDGKYLHKVIKEDLKDTKLHQTLTNVVIPTFDIKKLQPTIFSSFQVAASPDLDAQLA 169
           G  YDGKYLH +IKE L  T+LHQTLT+VVIPTFDIK LQP+IFSS++V  SP LDA LA
Sbjct: 121 GPNYDGKYLHNLIKEKLGRTRLHQTLTSVVIPTFDIKSLQPSIFSSYEVKRSPSLDAPLA 180

Query: 170 DIAIGTSAAPTYFPAYYFENPDEHGTLKEFNLIDGGVAANNPTLVAICEVTKHIL-KNPD 228
           DI IG+SAAPTYFPAY+F+N D+ G  +E NLIDGGVAANNP LVAI +VTK +  KNPD
Sbjct: 181 DICIGSSAAPTYFPAYFFKNQDKEGKARELNLIDGGVAANNPALVAISQVTKQVFDKNPD 240

Query: 229 FCQINPLDYTRFLVISLGTGSKRSEHKYNAKMASRWGVINWLYDNGDTPLLDCYGQAIGD 288
           F  I P+DY RFLVIS+GTGS +SE KYNAKMA++WGV+ WL   G TPL+D + QA  D
Sbjct: 241 FLPIKPMDYGRFLVISIGTGSPKSEQKYNAKMAAKWGVLGWLLHGGSTPLVDVFTQASAD 300

Query: 289 MVDYHISVVFQALQSEDNYLRIDDDTLQGDLSSIDLTTPENSENLVRAGEALLKKPVSRI 348
           MVD+HISVVFQAL SEDNYLRI DDTL G  +++D+TT EN  NLV+ GE LLKKPVSR+
Sbjct: 301 MVDFHISVVFQALHSEDNYLRIQDDTLHGTNATVDVTTKENLGNLVKIGERLLKKPVSRV 360

Query: 349 NLDTGLYEPIENGSAGTNEEALKRFAKMLSDERKLRESKS 388
           NL+TGL  P+EN   GTNEEALKRFAK+LSDE++LRE++S
Sbjct: 361 NLETGLSVPVEN--CGTNEEALKRFAKLLSDEKRLRETRS 398

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224096778|ref|XP_002310732.1| predicted protein [Populus trichocarpa] gi|222853635|gb|EEE91182.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359492610|ref|XP_002282462.2| PREDICTED: patatin group A-3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359492618|ref|XP_002282366.2| PREDICTED: patatin group A-3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359492616|ref|XP_002282391.2| PREDICTED: patatin group A-3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225458549|ref|XP_002282432.1| PREDICTED: patatin group A-3 [Vitis vinifera] gi|302142353|emb|CBI19556.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|302142355|emb|CBI19558.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|302142354|emb|CBI19557.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|296082439|emb|CBI21444.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225438666|ref|XP_002277305.1| PREDICTED: patatin group A-3-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query390
TAIR|locus:2115065428 PLP4 "AT4G37050" [Arabidopsis 0.797 0.726 0.613 2.3e-131
TAIR|locus:2114995414 PLP1 [Arabidopsis thaliana (ta 0.987 0.929 0.584 5.2e-120
TAIR|locus:2066286407 PLA2A "phospholipase A 2A" [Ar 0.964 0.923 0.570 3.3e-111
TAIR|locus:2158337401 AT5G43590 [Arabidopsis thalian 0.958 0.932 0.544 3.9e-99
TAIR|locus:2056088499 PLP6 "PATATIN-like protein 6" 0.841 0.657 0.301 2.4e-27
TAIR|locus:2077269384 PLP9 "PATATIN-like protein 9" 0.710 0.721 0.280 4.6e-25
TAIR|locus:2082702488 pPLAIIIbeta "patatin-related p 0.887 0.709 0.311 1.4e-24
UNIPROTKB|Q9KVG8355 VC0178 "Patatin-related protei 0.805 0.884 0.255 1.5e-15
TIGR_CMR|VC_0178355 VC_0178 "patatin family protei 0.805 0.884 0.255 1.5e-15
DICTYBASE|DDB_G0292746965 DDB_G0292746 "patatin family p 0.341 0.137 0.322 3.6e-10
TAIR|locus:2115065 PLP4 "AT4G37050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1015 (362.4 bits), Expect = 2.3e-131, Sum P(2) = 2.3e-131
 Identities = 200/326 (61%), Positives = 251/326 (76%)

Query:    78 KEQNRPMSAAKDIVPFYIRHGPKIFPQLRALM------------GSKYDGKYLHKVIKED 125
             +  NRP+  AK+IVPFY++H PKIFPQ R +             G K++GKYLH +++  
Sbjct:   102 RNSNRPLFEAKEIVPFYLKHSPKIFPQPRGIFCGWGETIVRLVGGPKFNGKYLHDLVEGF 161

Query:   126 LKDTKLHQTLTNVVIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPAY 185
             L DTKL Q+LTNVVIP FDIKKLQP IFSS+Q   +  ++A+L+DI I TSAAPT+FPA+
Sbjct:   162 LGDTKLTQSLTNVVIPCFDIKKLQPVIFSSYQAVNNQAMNAKLSDICISTSAAPTFFPAH 221

Query:   186 YFENPDEHGTLKEFNLIDGGVAANNPTLVAICEVTKHILK-NPDFCQINPLDYTRFLVIS 244
              F N D  G   EFNLIDGG+AANNPTL AI EVTK I+K NP    I+PLD+TRFLVIS
Sbjct:   222 RFTNEDSEGIKHEFNLIDGGIAANNPTLCAIAEVTKQIIKKNPVMGDISPLDFTRFLVIS 281

Query:   245 LGTGSKRSEHKYNAKMASRWGVINWLYDNGDTPLLDCYGQAIGDMVDYHISVVFQALQSE 304
             +GTGS R++ KYNAKMAS+WG++ W++++G TP+LDCY +AI DMVDY  SVVFQAL+SE
Sbjct:   282 IGTGSIRNQEKYNAKMASKWGLMCWVFESGSTPILDCYSEAIHDMVDYQSSVVFQALRSE 341

Query:   305 DNYLRIDDDTLQGDLSSIDLTTPENSENLVRAGEALLKKPVSRINLDTGLYEPIENGSAG 364
              NYLRIDDD+L+GDL S+D++T +N E LV  GEALLKK VSR+NL++G Y+PI      
Sbjct:   342 KNYLRIDDDSLKGDLGSVDISTEKNMEGLVEVGEALLKKRVSRVNLESGHYQPISENV-- 399

Query:   365 TNEEALKRFAKMLSDERKLRESKSSR 390
             TNEEALKRFAK+LS+ERKLRES+S +
Sbjct:   400 TNEEALKRFAKVLSEERKLRESRSPK 425
GO:0005575 "cellular_component" evidence=ND
GO:0006629 "lipid metabolic process" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0045735 "nutrient reservoir activity" evidence=ISS
GO:0004620 "phospholipase activity" evidence=IDA
GO:0009737 "response to abscisic acid stimulus" evidence=IDA
TAIR|locus:2114995 PLP1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066286 PLA2A "phospholipase A 2A" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158337 AT5G43590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2056088 PLP6 "PATATIN-like protein 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077269 PLP9 "PATATIN-like protein 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082702 pPLAIIIbeta "patatin-related phospholipase IIIbeta" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KVG8 VC0178 "Patatin-related protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0178 VC_0178 "patatin family protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0292746 DDB_G0292746 "patatin family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
cd07214349 cd07214, Pat17_isozyme_like, Patatin-like phosphol 0.0
cd07215329 cd07215, Pat17_PNPLA8_PNPLA9_like2, Patatin-like p 5e-81
cd07199258 cd07199, Pat17_PNPLA8_PNPLA9_like, Patatin-like ph 9e-76
COG3621394 COG3621, COG3621, Patatin [General function predic 3e-38
cd07213288 cd07213, Pat17_PNPLA8_PNPLA9_like1, Patatin-like p 7e-35
cd07217344 cd07217, Pat17_PNPLA8_PNPLA9_like4, Patatin-like p 3e-24
cd07211308 cd07211, Pat_PNPLA8, Patatin-like phospholipase do 2e-23
pfam01734189 pfam01734, Patatin, Patatin-like phospholipase 2e-21
cd07216309 cd07216, Pat17_PNPLA8_PNPLA9_like3, Patatin-like p 2e-21
cd07212312 cd07212, Pat_PNPLA9, Patatin-like phospholipase do 2e-19
cd01819155 cd01819, Patatin_and_cPLA2, Patatins and Phospholi 5e-11
cd07198172 cd07198, Patatin, Patatin-like phospholipase 4e-07
cd07207194 cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like pr 4e-07
cd07208266 cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical pa 3e-05
cd07205175 cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like 4e-05
cd07209215 cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical p 8e-04
>gnl|CDD|132853 cd07214, Pat17_isozyme_like, Patatin-like phospholipase of plants Back     alignment and domain information 
 Score =  522 bits (1347), Expect = 0.0
 Identities = 222/349 (63%), Positives = 262/349 (75%), Gaps = 14/349 (4%)

Query: 17  LITILSIDGGGIRGIIPGVILAYLESQLQELDGQDARLADYFDVIAGTSTGGLITAMLTA 76
            IT+LSIDGGGIRGIIP  IL +LE +LQELDG DAR+ADYFDVIAGTSTGGLITAMLTA
Sbjct: 3   FITVLSIDGGGIRGIIPATILEFLEGKLQELDGPDARIADYFDVIAGTSTGGLITAMLTA 62

Query: 77  PKEQNRPMSAAKDIVPFYIRHGPKIFPQ-----------LRALMGSKYDGKYLHKVIKED 125
           P E  RP+ AAKDIV FY+ +GPKIFPQ           LR+L+G KYDG YLH ++ E 
Sbjct: 63  PNENKRPLFAAKDIVQFYLENGPKIFPQSTGQFEDDRKKLRSLLGPKYDGVYLHDLLNEL 122

Query: 126 LKDTKLHQTLTNVVIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPAY 185
           L DT+L  TLTNVVIPTFDIK LQP IFSS +       +A+LAD+ I TSAAPTYFPA+
Sbjct: 123 LGDTRLSDTLTNVVIPTFDIKLLQPVIFSSSKAKNDKLTNARLADVCISTSAAPTYFPAH 182

Query: 186 YFENPDEHGTLKEFNLIDGGVAANNPTLVAICEVTKHILK-NPDFCQINPLDYTRFLVIS 244
           YF   D +G ++EFNL+DGGVAANNPTL+AI EVTK I+K NP F  I PLDY + LV+S
Sbjct: 183 YFTTEDSNGDIREFNLVDGGVAANNPTLLAISEVTKEIIKDNPFFASIKPLDYKKLLVLS 242

Query: 245 LGTGSKRSEHKYNAKMASRWGVINWLYDNGDTPLLDCYGQAIGDMVDYHISVVFQALQSE 304
           LGTGS  +E  Y    A++WG+I WL +NG TP++D +  A  DMVDYH+SV+FQAL SE
Sbjct: 243 LGTGS--AEESYKYNAAAKWGLITWLSENGXTPIIDIFSNASSDMVDYHLSVIFQALDSE 300

Query: 305 DNYLRIDDDTLQGDLSSIDLTTPENSENLVRAGEALLKKPVSRINLDTG 353
            NYLRI DD+L G  SS+D  T EN E LV  G+ LLKKPVSR+NL+TG
Sbjct: 301 KNYLRIQDDSLTGTASSVDDATEENLEKLVEIGKKLLKKPVSRVNLETG 349

Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates. Length = 349
>gnl|CDD|132854 cd07215, Pat17_PNPLA8_PNPLA9_like2, Patatin-like phospholipase of bacteria Back     alignment and domain information
>gnl|CDD|132838 cd07199, Pat17_PNPLA8_PNPLA9_like, Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17 Back     alignment and domain information
>gnl|CDD|226148 COG3621, COG3621, Patatin [General function prediction only] Back     alignment and domain information
>gnl|CDD|132852 cd07213, Pat17_PNPLA8_PNPLA9_like1, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|132856 cd07217, Pat17_PNPLA8_PNPLA9_like4, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|132850 cd07211, Pat_PNPLA8, Patatin-like phospholipase domain containing protein 8 Back     alignment and domain information
>gnl|CDD|216671 pfam01734, Patatin, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|132855 cd07216, Pat17_PNPLA8_PNPLA9_like3, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|132851 cd07212, Pat_PNPLA9, Patatin-like phospholipase domain containing protein 9 Back     alignment and domain information
>gnl|CDD|132836 cd01819, Patatin_and_cPLA2, Patatins and Phospholipases Back     alignment and domain information
>gnl|CDD|132837 cd07198, Patatin, Patatin-like phospholipase Back     alignment and domain information
>gnl|CDD|132846 cd07207, Pat_ExoU_VipD_like, ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2 Back     alignment and domain information
>gnl|CDD|132847 cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli Back     alignment and domain information
>gnl|CDD|132844 cd07205, Pat_PNPLA6_PNPLA7_NTE1_like, Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1 Back     alignment and domain information
>gnl|CDD|132848 cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 390
cd07214349 Pat17_isozyme_like Patatin-like phospholipase of p 100.0
cd07215329 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipa 100.0
cd07211308 Pat_PNPLA8 Patatin-like phospholipase domain conta 100.0
cd07213288 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipa 100.0
cd07216309 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipa 100.0
cd07212312 Pat_PNPLA9 Patatin-like phospholipase domain conta 100.0
cd07217344 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipa 100.0
cd07199258 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipas 100.0
KOG4231763 consensus Intracellular membrane-bound Ca2+-indepe 100.0
COG3621394 Patatin [General function prediction only] 100.0
cd07225306 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domai 100.0
cd07205175 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholi 100.0
cd07207194 Pat_ExoU_VipD_like ExoU and VipD-like proteins; ho 99.98
cd07228175 Pat_NTE_like_bacteria Bacterial patatin-like phosp 99.98
cd07210221 Pat_hypo_W_succinogenes_WS1459_like Hypothetical p 99.97
KOG0513503 consensus Ca2+-independent phospholipase A2 [Lipid 99.97
cd07227269 Pat_Fungal_NTE1 Fungal patatin-like phospholipase 99.97
cd07209215 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin sim 99.96
cd07208266 Pat_hypo_Ecoli_yjju_like Hypothetical patatin simi 99.96
PRK10279300 hypothetical protein; Provisional 99.96
cd07198172 Patatin Patatin-like phospholipase. Patatin is a s 99.94
cd07218245 Pat_iPLA2 Calcium-independent phospholipase A2; Cl 99.93
cd07204243 Pat_PNPLA_like Patatin-like phospholipase domain c 99.92
cd07221252 Pat_PNPLA3 Patatin-like phospholipase domain conta 99.92
cd07222246 Pat_PNPLA4 Patatin-like phospholipase domain conta 99.92
cd07232407 Pat_PLPL Patain-like phospholipase. Patatin-like p 99.92
cd07219382 Pat_PNPLA1 Patatin-like phospholipase domain conta 99.92
cd07230421 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TG 99.92
COG1752306 RssA Predicted esterase of the alpha-beta hydrolas 99.91
cd07220249 Pat_PNPLA2 Patatin-like phospholipase domain conta 99.9
PF01734204 Patatin: Patatin-like phospholipase This Prosite f 99.9
cd07224233 Pat_like Patatin-like phospholipase. Patatin-like 99.89
cd07206298 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 99.86
cd07223405 Pat_PNPLA5-mammals Patatin-like phospholipase doma 99.86
cd07231323 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar 99.85
cd07229391 Pat_TGL3_like Triacylglycerol lipase 3. Triacylgly 99.84
COG4667292 Predicted esterase of the alpha-beta hydrolase sup 99.83
KOG29681158 consensus Predicted esterase of the alpha-beta hyd 99.83
cd01819155 Patatin_and_cPLA2 Patatins and Phospholipases. Pat 99.8
TIGR03607 739 patatin-related protein. This bacterial protein fa 99.79
KOG2214543 consensus Predicted esterase of the alpha-beta hyd 99.51
KOG0513503 consensus Ca2+-independent phospholipase A2 [Lipid 99.35
KOG3773354 consensus Adiponutrin and related vesicular transp 98.99
cd00147438 cPLA2_like Cytosolic phospholipase A2, catalytic d 97.44
cd07202430 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase 94.27
cd07201 541 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and 91.11
PF01735 491 PLA2_B: Lysophospholipase catalytic domain; InterP 90.82
cd07200505 cPLA2_Grp-IVA Group IVA cytosolic phospholipase A2 84.4
smart00022 549 PLAc Cytoplasmic phospholipase A2, catalytic subun 83.96
KOG1325 571 consensus Lysophospholipase [Lipid transport and m 83.67
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants Back     alignment and domain information 
Probab=100.00  E-value=5.6e-71  Score=539.34  Aligned_cols=337  Identities=66%  Similarity=1.061  Sum_probs=291.3

Q ss_pred             CCceEEEEEeCcchhHHHHHHHHHHHHHHhhhhcCCCCCcCCCccEEEecchHHHHHHHHhCCCCCCCCCCCHHHHHHHH
Q 042584           15 ANLITILSIDGGGIRGIIPGVILAYLESQLQELDGQDARLADYFDVIAGTSTGGLITAMLTAPKEQNRPMSAAKDIVPFY   94 (390)
Q Consensus        15 ~~~~riLsLdGGG~RG~~~~~iL~~Le~~~~~~~g~~~~i~~~fDli~GTStGaiia~~l~~~~~~~~~~~s~~~~~~~~   94 (390)
                      ++++|||||||||+||+++++||++||++++++.|++.+++++||+|+|||||||||++|+.+...++|.|+++|+.++|
T Consensus         1 ~~~~rILslDGGGiRGi~~a~iL~~lE~~l~~~~g~~~~i~~~FDliaGTStGgiiA~~la~~~~~~~p~~~~~e~~~~y   80 (349)
T cd07214           1 GKFITVLSIDGGGIRGIIPATILEFLEGKLQELDGPDARIADYFDVIAGTSTGGLITAMLTAPNENKRPLFAAKDIVQFY   80 (349)
T ss_pred             CCceEEEEECCCchhhHHHHHHHHHHHHHHHHhcCCCCCHhHhCCEEeeCCHHHHHHHHHhcCCCCCCCccCHHHHHHHH
Confidence            46799999999999999999999999999988888778899999999999999999999999877789999999999999


Q ss_pred             HHhCCCcccc-----------hhhhcCCCCCcHHHHHHHHHHcccccccccCCceEEeeecCCCCceeeecCCCCCCCCC
Q 042584           95 IRHGPKIFPQ-----------LRALMGSKYDGKYLHKVIKEDLKDTKLHQTLTNVVIPTFDIKKLQPTIFSSFQVAASPD  163 (390)
Q Consensus        95 ~~~~~~iF~~-----------~~~~~~~~y~~~~le~~l~~~~g~~~l~d~~~~~~i~a~d~~~~~~~~f~~~~~~~~~~  163 (390)
                      .+.+.+||++           ++.+.+++|+++.|+++|+++||+.+|.|+.++++|+++|+.+++|++|++|+...+..
T Consensus        81 ~~~~~~iF~~~~~~~~~~~~~~~~~~~~~y~~~~L~~~L~~~~gd~~l~d~~~~v~I~a~dl~~~~p~~F~~~~~~~~~~  160 (349)
T cd07214          81 LENGPKIFPQSTGQFEDDRKKLRSLLGPKYDGVYLHDLLNELLGDTRLSDTLTNVVIPTFDIKLLQPVIFSSSKAKNDKL  160 (349)
T ss_pred             HHhhHHhcCCCcccchhHHHHHHHhccCccCcHHHHHHHHHHhccccHhhhCCceEEEeEECCCCCeEEEeCccccCCcc
Confidence            9999999965           11235789999999999999999999999999999999999999999999998766666


Q ss_pred             CCchHHHHHHhhCCCCCCCCceeecCCCCCCCceeeEeecCcccCCCcHHHHHHHHHHHhhc-CCCCCCCCCCCCCceEE
Q 042584          164 LDAQLADIAIGTSAAPTYFPAYYFENPDEHGTLKEFNLIDGGVAANNPTLVAICEVTKHILK-NPDFCQINPLDYTRFLV  242 (390)
Q Consensus       164 ~~~~l~da~rASsAaP~yF~p~~i~~~~~~G~~~~~~~vDGGv~~NnP~~~Al~ea~~~~~~-~~~~~~~~~~~~~~~~v  242 (390)
                      .++++|||||||||||+||||+.+.+.+..|..+++.||||||++|||+.+|+.||.+.... ++.+++.+..+.++++|
T Consensus       161 ~~~~l~da~rASSAaPtyFpp~~i~~~~~~g~~~~~~~vDGGv~aNNP~~~A~~ea~~~~~~~~~~~~~~~~~~~~~i~v  240 (349)
T cd07214         161 TNARLADVCISTSAAPTYFPAHYFTTEDSNGDIREFNLVDGGVAANNPTLLAISEVTKEIIKDNPFFASIKPLDYKKLLV  240 (349)
T ss_pred             cCcCHHHHHHHhcccccccCCeEeecccCCCCcceEEEecCceecCCHHHHHHHHHHHhhhccCcccccccCCCCCeEEE
Confidence            78999999999999999999999875432333345689999999999999999999875321 12222223345678999


Q ss_pred             EEecCCCCCCccccchhhhcccceeeccccCCCchHHHHHHhhhHHHHHHHHHHHHHhcCCCCCEEEeecCCCCCCCccc
Q 042584          243 ISLGTGSKRSEHKYNAKMASRWGVINWLYDNGDTPLLDCYGQAIGDMVDYHISVVFQALQSEDNYLRIDDDTLQGDLSSI  322 (390)
Q Consensus       243 lSiGTG~~~~~~~~~~~~~~~~g~~~w~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~Y~Rin~~~~~~~~~~l  322 (390)
                      ||||||....  .++..+..+||+++|+.+....||++++++++++++|++++++|+.+.++++|+|||++.+.+...+|
T Consensus       241 lSiGTG~~~~--~~~~~~~~~wG~~~W~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~Y~Ri~~~~~~~~~~~~  318 (349)
T cd07214         241 LSLGTGSAEE--SYKYNAAAKWGLITWLSENGXTPIIDIFSNASSDMVDYHLSVIFQALDSEKNYLRIQDDSLTGTASSV  318 (349)
T ss_pred             EEecCCCccc--ccChhhhccCCeeecccccCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCCCcccCc
Confidence            9999999653  44555667899999996655578999999999999999999999877778899999987555444789


Q ss_pred             cCCCHHHHHHHHHHHHHHhcCcCcccccCCC
Q 042584          323 DLTTPENSENLVRAGEALLKKPVSRINLDTG  353 (390)
Q Consensus       323 D~a~~~~l~~L~~~a~~~l~~~~~~~~~~~~  353 (390)
                      |+++++|++.|+.+|+++++++...+|++||
T Consensus       319 d~~~~~ni~~L~~~a~~~l~~~~~~~~~~~~  349 (349)
T cd07214         319 DDATEENLEKLVEIGKKLLKKPVSRVNLETG  349 (349)
T ss_pred             ccCCHHHHHHHHHHHHHHHhCcccccCCCCC
Confidence            9999999999999999999999999999996

Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria Back     alignment and domain information
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8 Back     alignment and domain information
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase Back     alignment and domain information
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase Back     alignment and domain information
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9 Back     alignment and domain information
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase Back     alignment and domain information
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17 Back     alignment and domain information
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism] Back     alignment and domain information
>COG3621 Patatin [General function prediction only] Back     alignment and domain information
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7 Back     alignment and domain information
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1 Back     alignment and domain information
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2 Back     alignment and domain information
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6 Back     alignment and domain information
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes Back     alignment and domain information
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism] Back     alignment and domain information
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6 Back     alignment and domain information
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli Back     alignment and domain information
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli Back     alignment and domain information
>PRK10279 hypothetical protein; Provisional Back     alignment and domain information
>cd07198 Patatin Patatin-like phospholipase Back     alignment and domain information
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2 Back     alignment and domain information
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family Back     alignment and domain information
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3 Back     alignment and domain information
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4 Back     alignment and domain information
>cd07232 Pat_PLPL Patain-like phospholipase Back     alignment and domain information
>cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1 Back     alignment and domain information
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5 Back     alignment and domain information
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] Back     alignment and domain information
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2 Back     alignment and domain information
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2 Back     alignment and domain information
>cd07224 Pat_like Patatin-like phospholipase Back     alignment and domain information
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase Back     alignment and domain information
>cd07223 Pat_PNPLA5-mammals Patatin-like phospholipase domain containing protein 5 Back     alignment and domain information
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase Back     alignment and domain information
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3 Back     alignment and domain information
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases Back     alignment and domain information
>TIGR03607 patatin-related protein Back     alignment and domain information
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only] Back     alignment and domain information
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism] Back     alignment and domain information
>KOG3773 consensus Adiponutrin and related vesicular transport proteins; predicted alpha/beta hydrolase [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00147 cPLA2_like Cytosolic phospholipase A2, catalytic domain; hydrolyses arachidonyl phospholipids Back     alignment and domain information
>cd07202 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase A2; catalytic domain; Ca-independent Back     alignment and domain information
>cd07201 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent Back     alignment and domain information
>PF01735 PLA2_B: Lysophospholipase catalytic domain; InterPro: IPR002642 This family consists of lysophospholipase / phospholipase B 3 Back     alignment and domain information
>cd07200 cPLA2_Grp-IVA Group IVA cytosolic phospholipase A2; catalytic domain; Ca-dependent Back     alignment and domain information
>smart00022 PLAc Cytoplasmic phospholipase A2, catalytic subunit Back     alignment and domain information
>KOG1325 consensus Lysophospholipase [Lipid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
1oxw_A373 The Crystal Structure Of Semet Patatin Length = 373 1e-86
>pdb|1OXW|A Chain A, The Crystal Structure Of Semet Patatin Length = 373 Back     alignment and structure 
Iteration: 1

 Score =  316 bits (809), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 175/376 (46%), Positives = 231/376 (61%), Gaps = 23/376 (6%)
Query: 18  ITILSXXXXXXXXXXXXXXLAYLESQLQELDGQ-DARLADYFDVIAGTSTGGLITAMLTA 76
           +T+LS              L +LE QLQE D   DARLADYFDVI GTSTGGL+TA ++ 
Sbjct: 16  VTVLSIDGGGIRGIIPATILEFLEGQLQEXDNNADARLADYFDVIGGTSTGGLLTAXIST 75
Query: 77  PKEQNRPMSAAKDIVPFYIRHGPKIFPQLRALMGSKYDGKYLHKVIKEDLKDTKLHQTLT 136
           P E NRP +AAK+IVPFY  HGP+IF     ++G KYDGKYL +V++E L +T++HQ LT
Sbjct: 76  PNENNRPFAAAKEIVPFYFEHGPQIFNPSGQILGPKYDGKYLXQVLQEKLGETRVHQALT 135
Query: 137 NVVIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPAYYFENPDEHGTL 196
            VVI +FDIK  +P IF+   +A SP+LDA+  DI+  T+AAPTYFP +YF     +G  
Sbjct: 136 EVVISSFDIKTNKPVIFTKSNLANSPELDAKXYDISYSTAAAPTYFPPHYFVTNTSNGDE 195
Query: 197 KEFNLIDGGVA-ANNPTLVAICEVTKHILKNPDFCQINPLDYTRFLVISLGTGSKRSEHK 255
            EFNL+DG VA   +P L++I   T+   K+P F  I  L+Y + L++SLGTG+     K
Sbjct: 196 YEFNLVDGAVATVADPALLSISVATRLAQKDPAFASIRSLNYKKXLLLSLGTGTTSEFDK 255
Query: 256 -YNAKMASRWGVINW-LYDNGDTPLLDCYGQAIGDMVDYHISVVFQALQSEDNYLRIDDD 313
            Y AK A+ W  ++W L     T     Y        DY++S  FQAL S++NYLR+ ++
Sbjct: 256 TYTAKEAATWTAVHWXLVIQKXTDAASSY------XTDYYLSTAFQALDSKNNYLRVQEN 309
Query: 314 TLQGDLSSIDLTTPENSENLVRAGEALLKKPVSRINLDTGLYEPIENGSAGTNEEALKRF 373
            L G  +  D  +  N E LV+ GE LLKKPVS  N +             T EEALKRF
Sbjct: 310 ALTGTTTEXDDASEANXELLVQVGENLLKKPVSEDNPE-------------TYEEALKRF 356
Query: 374 AKMLSDERKLRESKSS 389
           AK+LSD +KLR +K+S
Sbjct: 357 AKLLSDRKKLRANKAS 372

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query390
1oxw_A373 Patatin; alpha/beta class fold with approximately 1e-126
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3 Length = 373 Back     alignment and structure
 Score =  366 bits (940), Expect = e-126
 Identities = 188/392 (47%), Positives = 251/392 (64%), Gaps = 23/392 (5%)

Query: 1   MENRAFPANQPPTYANLITILSIDGGGIRGIIPGVILAYLESQLQELDG-QDARLADYFD 59
           M +             ++T+LSIDGGGIRGIIP  IL +LE QLQE+D   DARLADYFD
Sbjct: 1   MHHHHHH--AMAQLGEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFD 58

Query: 60  VIAGTSTGGLITAMLTAPKEQNRPMSAAKDIVPFYIRHGPKIFPQLRALMGSKYDGKYLH 119
           VI GTSTGGL+TAM++ P E NRP +AAK+IVPFY  HGP+IF     ++G KYDGKYL 
Sbjct: 59  VIGGTSTGGLLTAMISTPNENNRPFAAAKEIVPFYFEHGPQIFNPSGQILGPKYDGKYLM 118

Query: 120 KVIKEDLKDTKLHQTLTNVVIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAP 179
           +V++E L +T++HQ LT VVI +FDIK  +P IF+   +A SP+LDA++ DI+  T+AAP
Sbjct: 119 QVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKMYDISYSTAAAP 178

Query: 180 TYFPAYYFENPDEHGTLKEFNLIDGGVAA-NNPTLVAICEVTKHILKNPDFCQINPLDYT 238
           TYFP +YF     +G   EFNL+DG VA   +P L++I   T+   K+P F  I  L+Y 
Sbjct: 179 TYFPPHYFVTNTSNGDEYEFNLVDGAVATVADPALLSISVATRLAQKDPAFASIRSLNYK 238

Query: 239 RFLVISLGTGSKRSEHK-YNAKMASRWGVINWLYDNGDTPLLDCYGQAIGDMVDYHISVV 297
           + L++SLGTG+     K Y AK A+ W  ++W+       +      A   M DY++S  
Sbjct: 239 KMLLLSLGTGTTSEFDKTYTAKEAATWTAVHWML-----VIQKMTDAASSYMTDYYLSTA 293

Query: 298 FQALQSEDNYLRIDDDTLQGDLSSIDLTTPENSENLVRAGEALLKKPVSRINLDTGLYEP 357
           FQAL S++NYLR+ ++ L G  + +D  +  N E LV+ GE LLKKPVS  N +      
Sbjct: 294 FQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQVGENLLKKPVSEDNPE------ 347

Query: 358 IENGSAGTNEEALKRFAKMLSDERKLRESKSS 389
                  T EEALKRFAK+LSD +KLR +K+S
Sbjct: 348 -------TYEEALKRFAKLLSDRKKLRANKAS 372
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query390
1oxw_A373 Patatin; alpha/beta class fold with approximately 100.0
4akf_A577 VIPD; transferase; 2.90A {Legionella pneumophila} 99.94
3tu3_B 711 EXOU; type III secretion system, SPC infectious di 99.91
1cjy_A 749 CPLA2, protein (cytosolic phospholipase A2); lipid 96.2
>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3 Back     alignment and structure
Probab=100.00  E-value=3e-71  Score=546.04  Aligned_cols=357  Identities=52%  Similarity=0.886  Sum_probs=312.5

Q ss_pred             CCCceEEEEEeCcchhHHHHHHHHHHHHHHhhhhcCC-CCCcCCCccEEEecchHHHHHHHHhCCCCCCCCCCCHHHHHH
Q 042584           14 YANLITILSIDGGGIRGIIPGVILAYLESQLQELDGQ-DARLADYFDVIAGTSTGGLITAMLTAPKEQNRPMSAAKDIVP   92 (390)
Q Consensus        14 ~~~~~riLsLdGGG~RG~~~~~iL~~Le~~~~~~~g~-~~~i~~~fDli~GTStGaiia~~l~~~~~~~~~~~s~~~~~~   92 (390)
                      ++++.++|||||||+||+++++||++||++++++.|+ +.+++++||+|+|||+|||||++|+.+...++++|+++++.+
T Consensus        12 ~~~~~~~LsLdGGG~RG~~~~gvL~~Lee~l~~~~G~~~~~i~~~fD~I~GTS~Gaiiaa~la~g~~~~r~~~s~~el~~   91 (373)
T 1oxw_A           12 LGEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTPNENNRPFAAAKEIVP   91 (373)
T ss_dssp             CCSCEEEEEECCCGGGGHHHHHHHHHHHHHHHHHTTCTTCCHHHHCSEEEECTHHHHHHHHHHSBCTTSSBSSCGGGHHH
T ss_pred             CCCCeEEEEEcCCcHHHHHHHHHHHHHHHHHHhhcCCccCCchhhCCEEEEECHHHHHHHHHhcCCccCCCcCCHHHHHH
Confidence            4467899999999999999999999999998877774 568889999999999999999999998766789999999999


Q ss_pred             HHHHhCCCcccchhhhcCCCCCcHHHHHHHHHHcccccccccCCceEEeeecCCCCceeeecCCCCCCCCCCCchHHHHH
Q 042584           93 FYIRHGPKIFPQLRALMGSKYDGKYLHKVIKEDLKDTKLHQTLTNVVIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIA  172 (390)
Q Consensus        93 ~~~~~~~~iF~~~~~~~~~~y~~~~le~~l~~~~g~~~l~d~~~~~~i~a~d~~~~~~~~f~~~~~~~~~~~~~~l~da~  172 (390)
                      +|.+...++|...+.+.++.|+.+.|+++|++.|++.+|.|+.++++|++||+.+++|++|++|..+.++..+..+|+|+
T Consensus        92 ~~~~~~~~iF~~~~~l~~~~~~~~~L~~~l~~~~~~~~l~d~~~~~~i~atd~~~~~~~~f~~~~~~~~~~~~~~l~~av  171 (373)
T 1oxw_A           92 FYFEHGPQIFNPSGQILGPKYDGKYLMQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKMYDIS  171 (373)
T ss_dssp             HHHHHHHHHTCCCCCSSSCSCCCHHHHHHHHHHHTTCBGGGCSSEEEEEEEETTTTEEEEEESSSTTTCGGGCCBHHHHH
T ss_pred             HHHHhhHhhcCCCCccccCCcCcHHHHHHHHHHHCcCcHHHcCCCEEEEeEECCCCCeEEEeCCCCCCCCccCchHHHHH
Confidence            99998888887534457889999999999999999999999999999999999999999999998766666788999999


Q ss_pred             HhhCCCCCCCCceeecCCCCCCCceeeEeecCcccC-CCcHHHHHHHHHHHhhc-CCCCCCCCCCCCCceEEEEecCCCC
Q 042584          173 IGTSAAPTYFPAYYFENPDEHGTLKEFNLIDGGVAA-NNPTLVAICEVTKHILK-NPDFCQINPLDYTRFLVISLGTGSK  250 (390)
Q Consensus       173 rASsAaP~yF~p~~i~~~~~~G~~~~~~~vDGGv~~-NnP~~~Al~ea~~~~~~-~~~~~~~~~~~~~~~~vlSiGTG~~  250 (390)
                      +||||+|+||||+.+...+.+|+.++..|+|||+.+ |||+..|+.|+.+ +|. ++++++.++.+.++++|||||||..
T Consensus       172 ~ASsA~P~~F~p~~i~~~d~~G~~~~~~~vDGGv~~~NnP~~~a~~ea~~-~~~~~~~~~~~~~~~~~~~~vvSlGTG~~  250 (373)
T 1oxw_A          172 YSTAAAPTYFPPHYFVTNTSNGDEYEFNLVDGAVATVADPALLSISVATR-LAQKDPAFASIRSLNYKKMLLLSLGTGTT  250 (373)
T ss_dssp             HHHHCCTTTSCCEEEEEECTTSCEEEEEEEEGGGGTCSSCHHHHHHHHHH-HTTTCGGGTTSTTCCGGGEEEEEECCCCB
T ss_pred             HHHccCCcCcCcEEeeccCCCCcccceeeecCcccccCChHHHHHHHHHH-HhccCcccccccccccCceEEEEecCCCC
Confidence            999999999999998754333543446899999999 9999999999754 663 3456666666667899999999984


Q ss_pred             C-CccccchhhhcccceeeccccCCCchHHHHHHhhhHHHHHHHHHHHHHhcCCCCCEEEeecCCCCCCCccccCCCHHH
Q 042584          251 R-SEHKYNAKMASRWGVINWLYDNGDTPLLDCYGQAIGDMVDYHISVVFQALQSEDNYLRIDDDTLQGDLSSIDLTTPEN  329 (390)
Q Consensus       251 ~-~~~~~~~~~~~~~g~~~w~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~Y~Rin~~~~~~~~~~lD~a~~~~  329 (390)
                      + ....++..+..+||+++|+.     ||++++++++++++|+|++++|+.+.++++|||||++.+++...+||++++++
T Consensus       251 ~~~~~~~~~~~~~~wG~~~w~~-----~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~Y~Ri~~~~l~~~~~~lD~~~~~~  325 (373)
T 1oxw_A          251 SEFDKTYTAKEAATWTAVHWML-----VIQKMTDAASSYMTDYYLSTAFQALDSKNNYLRVQENALTGTTTEMDDASEAN  325 (373)
T ss_dssp             CTTSSCCCHHHHTTCCHHHHHT-----THHHHHHHHHHHHHHHHHHHHHHHTTCGGGEEEECCCCBCGGGGCTTCCCHHH
T ss_pred             CCcccccChhhhhhhhhHhHHH-----HHHHHHHHhhHHHHHHHHHHHhhccCCCCcEEEEeCCCCCCcccccccCCHHH
Confidence            3 23456777788999999983     69999999999999999999998777789999999865777788999999999


Q ss_pred             HHHHHHHHHHHhcCcCcccccCCCccccccCCCCCchHHHHHHHHHHHHHHHHhhhhcCC
Q 042584          330 SENLVRAGEALLKKPVSRINLDTGLYEPIENGSAGTNEEALKRFAKMLSDERKLRESKSS  389 (390)
Q Consensus       330 l~~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~a~~L~~~r~~r~~~~~  389 (390)
                      |+.|+.+|++|++++.+++|++             ||+++|++||++|++||++|+.+++
T Consensus       326 l~~L~~~~~~~l~~~~~~~~~~-------------tn~~~l~~~a~~L~~e~~~r~~~~~  372 (373)
T 1oxw_A          326 MELLVQVGENLLKKPVSEDNPE-------------TYEEALKRFAKLLSDRKKLRANKAS  372 (373)
T ss_dssp             HHHHHHHHHHHHTSBSSSSCCC-------------BHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHhcccccccch-------------hHHHHHHHHHHHHHHHhhcccccCC
Confidence            9999999999999999998885             4999999999999999999998765
>4akf_A VIPD; transferase; 2.90A {Legionella pneumophila} Back     alignment and structure
>3tu3_B EXOU; type III secretion system, SPC infectious diseases, structural genomics, center for struct genomics of infectious diseases, csgid; 1.92A {Pseudomonas aeruginosa} PDB: 4akx_B* Back     alignment and structure
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 390
d1oxwa_360 c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solan 1e-101
>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]} Length = 360 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: Patatin
domain: Patatin
species: Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]

 Score =  301 bits (771), Expect = e-101
 Identities = 186/376 (49%), Positives = 248/376 (65%), Gaps = 21/376 (5%)

Query: 16  NLITILSIDGGGIRGIIPGVILAYLESQLQELDGQ-DARLADYFDVIAGTSTGGLITAML 74
            ++T+LSIDGGGIRGIIP  IL +LE QLQE+D   DARLADYFDVI GTSTGGL+TAM+
Sbjct: 3   EMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMI 62

Query: 75  TAPKEQNRPMSAAKDIVPFYIRHGPKIFPQLRALMGSKYDGKYLHKVIKEDLKDTKLHQT 134
           + P E NRP +AAK+IVPFY  HGP+IF     ++G KYDGKYL +V++E L +T++HQ 
Sbjct: 63  STPNENNRPFAAAKEIVPFYFEHGPQIFNPSGQILGPKYDGKYLMQVLQEKLGETRVHQA 122

Query: 135 LTNVVIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAIGTSAAPTYFPAYYFENPDEHG 194
           LT VVI +FDIK  +P IF+   +A SP+LDA++ DI+  T+AAPTYFP +YF     +G
Sbjct: 123 LTEVVISSFDIKTNKPVIFTKSNLANSPELDAKMYDISYSTAAAPTYFPPHYFVTNTSNG 182

Query: 195 TLKEFNLIDGGVAAN-NPTLVAICEVTKHILKNPDFCQINPLDYTRFLVISLGTGSKRSE 253
              EFNL+DG VA   +P L++I   T+   K+P F  I  L+Y + L++SLGTG+    
Sbjct: 183 DEYEFNLVDGAVATVADPALLSISVATRLAQKDPAFASIRSLNYKKMLLLSLGTGTTSEF 242

Query: 254 HK-YNAKMASRWGVINWLYDNGDTPLLDCYGQAIGDMVDYHISVVFQALQSEDNYLRIDD 312
            K Y AK A+ W  ++W+       +      A   M DY++S  FQAL S++NYLR+ +
Sbjct: 243 DKTYTAKEAATWTAVHWML-----VIQKMTDAASSYMTDYYLSTAFQALDSKNNYLRVQE 297

Query: 313 DTLQGDLSSIDLTTPENSENLVRAGEALLKKPVSRINLDTGLYEPIENGSAGTNEEALKR 372
           + L G  + +D  +  N E LV+ GE LLKKPVS  N +             T EEALKR
Sbjct: 298 NALTGTTTEMDDASEANMELLVQVGENLLKKPVSEDNPE-------------TYEEALKR 344

Query: 373 FAKMLSDERKLRESKS 388
           FAK+LSD +KLR +K+
Sbjct: 345 FAKLLSDRKKLRANKA 360

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query390
d1oxwa_360 Patatin {Heartleaf nightshade (Solanum cardiophyll 100.0
d1cjya2 580 Cytosolic phospholipase A2 catalytic domain {Human 94.86
>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: Patatin
domain: Patatin
species: Heartleaf nightshade (Solanum cardiophyllum) [TaxId: 160510]

Probab=100.00  E-value=3e-60  Score=463.44  Aligned_cols=354  Identities=52%  Similarity=0.881  Sum_probs=298.7

Q ss_pred             CCceEEEEEeCcchhHHHHHHHHHHHHHHhhhhcC-CCCCcCCCccEEEecchHHHHHHHHhCCCCCCCCCCCHHHHHHH
Q 042584           15 ANLITILSIDGGGIRGIIPGVILAYLESQLQELDG-QDARLADYFDVIAGTSTGGLITAMLTAPKEQNRPMSAAKDIVPF   93 (390)
Q Consensus        15 ~~~~riLsLdGGG~RG~~~~~iL~~Le~~~~~~~g-~~~~i~~~fDli~GTStGaiia~~l~~~~~~~~~~~s~~~~~~~   93 (390)
                      |+.++||||||||+||+++++||++||+++.+..+ ++.+++++||+|+|||+|||||++|+.+.......++..++.+.
T Consensus         2 ~~~v~iLsldGGG~rG~~~~~vL~~L~~~~~~~~~~~~~~~~d~fD~i~GTS~Gaiia~~la~g~~~~~~~~~~~~~~~~   81 (360)
T d1oxwa_           2 GEMVTVLSIDGGGIRGIIPATILEFLEGQLQEMDNNADARLADYFDVIGGTSTGGLLTAMISTPNENNRPFAAAKEIVPF   81 (360)
T ss_dssp             CSCEEEEEECCCGGGGHHHHHHHHHHHHHHHHHTTCTTCCHHHHCSEEEECTHHHHHHHHHHSBCTTSSBSSCGGGHHHH
T ss_pred             CCceEEEEECCCHHHHHHHHHHHHHHHHcCCcccccCCCChhhhCCEEEEecHHHHHHHHHHcCCCchhHHHHHHHHHHH
Confidence            67899999999999999999999999999876543 45689999999999999999999999998777778889999999


Q ss_pred             HHHhCCCcccchhhhcCCCCCcHHHHHHHHHHcccccccccCCceEEeeecCCCCceeeecCCCCCCCCCCCchHHHHHH
Q 042584           94 YIRHGPKIFPQLRALMGSKYDGKYLHKVIKEDLKDTKLHQTLTNVVIPTFDIKKLQPTIFSSFQVAASPDLDAQLADIAI  173 (390)
Q Consensus        94 ~~~~~~~iF~~~~~~~~~~y~~~~le~~l~~~~g~~~l~d~~~~~~i~a~d~~~~~~~~f~~~~~~~~~~~~~~l~da~r  173 (390)
                      |......+|.....+.++.|+.+.++++|++.|++.++.+..+++.+++++..++++++|+++....++..+.++|+|++
T Consensus        82 ~~~~~~~~f~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~  161 (360)
T d1oxwa_          82 YFEHGPQIFNPSGQILGPKYDGKYLMQVLQEKLGETRVHQALTEVVISSFDIKTNKPVIFTKSNLANSPELDAKMYDISY  161 (360)
T ss_dssp             HHHHHHHHTCCCCCSSSCSCCCHHHHHHHHHHHTTCBGGGCSSEEEEEEEETTTTEEEEEESSSTTTCGGGCCBHHHHHH
T ss_pred             HHhhcchhhhccccccCcccchHHHHHHHHHHhCCchhhhccCcceeEecccCCCCeEEEeccccccCCcccchHHHhhh
Confidence            98887777765555678899999999999999999999999999999999999999999999987777778899999999


Q ss_pred             hhCCCCCCCCceeecCCCCCCCceeeEeecCcccC-CCcHHHHHHHHHHHhhcC-CCCCCCCCCCCCceEEEEecCCCCC
Q 042584          174 GTSAAPTYFPAYYFENPDEHGTLKEFNLIDGGVAA-NNPTLVAICEVTKHILKN-PDFCQINPLDYTRFLVISLGTGSKR  251 (390)
Q Consensus       174 ASsAaP~yF~p~~i~~~~~~G~~~~~~~vDGGv~~-NnP~~~Al~ea~~~~~~~-~~~~~~~~~~~~~~~vlSiGTG~~~  251 (390)
                      ||||+|+||||+++.+....|....+.|+|||+.+ |||+..|+.|+.+ +|.. +.+......+...++++|+|||..+
T Consensus       162 ASsA~P~~F~p~~~~~~~~~~~~~~~~~~Dgg~~~~nnp~~~a~~e~~~-l~~~~~~~~~~~~~~~~~~~~~s~gtg~~~  240 (360)
T d1oxwa_         162 STAAAPTYFPPHYFVTNTSNGDEYEFNLVDGAVATVADPALLSISVATR-LAQKDPAFASIRSLNYKKMLLLSLGTGTTS  240 (360)
T ss_dssp             HHHCCTTTSCCEEEEEECTTSCEEEEEEEEGGGGTCSSCHHHHHHHHHH-HTTTCGGGTTSTTCCGGGEEEEEECCCCBC
T ss_pred             hhhcCCCCCCCEEEecccCCCCceeEEecccchhhccCchHHHHHHHHH-hcccCccccccccCCccceeeecccccccc
Confidence            99999999999998765433444556799999986 5899999999865 5532 2222122344567899999999854


Q ss_pred             Cc-cccchhhhcccceeeccccCCCchHHHHHHhhhHHHHHHHHHHHHHhcCCCCCEEEeecCCCCCCCccccCCCHHHH
Q 042584          252 SE-HKYNAKMASRWGVINWLYDNGDTPLLDCYGQAIGDMVDYHISVVFQALQSEDNYLRIDDDTLQGDLSSIDLTTPENS  330 (390)
Q Consensus       252 ~~-~~~~~~~~~~~g~~~w~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~Y~Rin~~~~~~~~~~lD~a~~~~l  330 (390)
                      .. ..+......+||+++|+.     ++.+++..++.+++++++..+++....+++|||||++.+......||++++++|
T Consensus       241 ~~~~~~~~~~~~~~g~~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~R~~~~~~~~~~~~lDd~s~~~l  315 (360)
T d1oxwa_         241 EFDKTYTAKEAATWTAVHWML-----VIQKMTDAASSYMTDYYLSTAFQALDSKNNYLRVQENALTGTTTEMDDASEANM  315 (360)
T ss_dssp             TTSSCCCHHHHTTCCHHHHHT-----THHHHHHHHHHHHHHHHHHHHHHHTTCGGGEEEECCCCBCGGGGCTTCCCHHHH
T ss_pred             ccccccchhhhhhcchHhHHH-----HHHHHHHhhhHHHHHHHHHHHHHhcCCCCcEEEEcCCccccccccccCCCHHHH
Confidence            33 234455677899999983     588888888889999999999887777789999998655556678999999999


Q ss_pred             HHHHHHHHHHhcCcCcccccCCCccccccCCCCCchHHHHHHHHHHHHHHHHhhhhc
Q 042584          331 ENLVRAGEALLKKPVSRINLDTGLYEPIENGSAGTNEEALKRFAKMLSDERKLRESK  387 (390)
Q Consensus       331 ~~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~a~~L~~~r~~r~~~  387 (390)
                      ++|++.|++|++++....|.             .+|+++|++||+.|++||++|+.+
T Consensus       316 ~~l~~~g~~~~~~~~~~~~~-------------~~~~~~L~~~~~~L~~er~~r~~~  359 (360)
T d1oxwa_         316 ELLVQVGENLLKKPVSEDNP-------------ETYEEALKRFAKLLSDRKKLRANK  359 (360)
T ss_dssp             HHHHHHHHHHHTSBSSSSCC-------------CBHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhhhhhhh-------------hHHHHHHHHHHHHHHHHHHHhhhc
Confidence            99999999999988665443             579999999999999999999764
>d1cjya2 c.19.1.2 (A:142-721) Cytosolic phospholipase A2 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure