Query 042585
Match_columns 286
No_of_seqs 159 out of 1555
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 07:37:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042585.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042585hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.9 2.5E-24 5.5E-29 178.3 2.6 253 17-279 98-382 (419)
2 KOG4341 F-box protein containi 99.7 1.4E-18 3E-23 150.2 1.1 222 18-259 73-343 (483)
3 PF12937 F-box-like: F-box-lik 99.0 4.4E-10 9.5E-15 69.5 3.7 37 17-53 1-37 (47)
4 KOG4341 F-box protein containi 98.9 1.3E-10 2.7E-15 101.4 -3.1 158 96-253 111-285 (483)
5 KOG2120 SCF ubiquitin ligase, 98.8 6.3E-10 1.4E-14 93.3 -1.1 136 92-229 231-377 (419)
6 PF00646 F-box: F-box domain; 98.6 2.2E-08 4.7E-13 62.1 1.4 38 16-53 2-39 (48)
7 cd00116 LRR_RI Leucine-rich re 98.6 8E-08 1.7E-12 84.1 5.1 150 94-247 80-261 (319)
8 KOG1947 Leucine rich repeat pr 98.5 6E-08 1.3E-12 89.6 3.2 115 143-257 186-316 (482)
9 KOG1947 Leucine rich repeat pr 98.5 1.8E-08 4E-13 93.0 -0.4 163 95-258 188-373 (482)
10 smart00256 FBOX A Receptor for 98.5 1.6E-07 3.5E-12 55.9 3.4 34 20-53 1-34 (41)
11 KOG3207 Beta-tubulin folding c 98.5 4.4E-08 9.4E-13 86.2 1.0 151 95-247 146-312 (505)
12 cd00116 LRR_RI Leucine-rich re 98.4 1.4E-07 2.9E-12 82.6 3.2 152 95-247 51-232 (319)
13 KOG3665 ZYG-1-like serine/thre 98.3 3.6E-07 7.8E-12 87.6 3.1 123 122-245 122-259 (699)
14 PF14580 LRR_9: Leucine-rich r 98.3 1.3E-06 2.7E-11 69.6 5.0 104 120-225 40-150 (175)
15 PLN00113 leucine-rich repeat r 98.2 3.8E-06 8.1E-11 84.7 8.8 59 95-156 164-223 (968)
16 PLN03210 Resistant to P. syrin 98.2 1.8E-06 3.8E-11 88.3 6.1 130 122-256 778-913 (1153)
17 PLN00113 leucine-rich repeat r 98.2 3.9E-06 8.5E-11 84.5 8.1 128 121-250 451-585 (968)
18 PLN03210 Resistant to P. syrin 98.1 6.2E-06 1.3E-10 84.3 7.7 119 122-245 611-734 (1153)
19 KOG3207 Beta-tubulin folding c 98.1 1.9E-06 4.1E-11 76.1 3.5 131 120-250 119-260 (505)
20 PF14580 LRR_9: Leucine-rich r 98.0 2E-06 4.4E-11 68.4 1.6 126 118-247 15-151 (175)
21 KOG1909 Ran GTPase-activating 98.0 1.7E-05 3.7E-10 68.3 6.2 153 95-247 92-281 (382)
22 KOG4194 Membrane glycoprotein 97.7 1.1E-05 2.4E-10 73.9 0.7 13 144-156 316-328 (873)
23 KOG0618 Serine/threonine phosp 97.4 5.2E-05 1.1E-09 73.0 1.1 105 120-227 381-488 (1081)
24 KOG1909 Ran GTPase-activating 97.4 0.00012 2.7E-09 63.2 2.9 127 122-248 157-310 (382)
25 KOG3864 Uncharacterized conser 97.3 5.3E-05 1.2E-09 60.7 -0.5 90 111-200 90-186 (221)
26 KOG3665 ZYG-1-like serine/thre 97.1 0.00039 8.5E-09 67.0 3.8 157 89-250 116-289 (699)
27 KOG4194 Membrane glycoprotein 97.1 0.00033 7E-09 64.7 3.0 86 117-204 97-187 (873)
28 KOG0617 Ras suppressor protein 97.0 1.4E-05 3.1E-10 62.4 -5.7 61 114-178 48-110 (264)
29 PF13855 LRR_8: Leucine rich r 96.9 0.00031 6.8E-09 45.6 1.0 57 123-180 2-59 (61)
30 KOG0444 Cytoskeletal regulator 96.8 0.00017 3.7E-09 67.0 -1.3 124 95-225 126-255 (1255)
31 PRK15387 E3 ubiquitin-protein 96.8 0.0025 5.3E-08 62.2 6.1 54 94-156 200-253 (788)
32 PF13855 LRR_8: Leucine rich r 96.8 0.0012 2.5E-08 42.8 2.5 14 212-225 46-59 (61)
33 KOG0618 Serine/threonine phosp 96.8 0.00015 3.2E-09 70.0 -2.5 119 122-248 359-488 (1081)
34 KOG0281 Beta-TrCP (transducin 96.8 0.00058 1.3E-08 58.7 1.3 42 9-50 67-112 (499)
35 PRK15386 type III secretion pr 96.7 0.003 6.4E-08 56.8 5.3 132 95-246 52-187 (426)
36 KOG3864 Uncharacterized conser 96.4 0.00069 1.5E-08 54.4 -0.3 80 147-228 103-189 (221)
37 smart00367 LRR_CC Leucine-rich 96.4 0.0027 5.8E-08 33.5 2.0 24 144-167 1-25 (26)
38 KOG2739 Leucine-rich acidic nu 96.4 0.0016 3.5E-08 54.2 1.8 105 120-225 41-153 (260)
39 PRK15387 E3 ubiquitin-protein 96.3 0.0082 1.8E-07 58.6 6.1 52 95-156 222-273 (788)
40 PF07723 LRR_2: Leucine Rich R 96.2 0.0062 1.3E-07 32.1 2.7 25 146-170 1-26 (26)
41 KOG4658 Apoptotic ATPase [Sign 96.2 0.004 8.7E-08 61.8 3.4 59 95-156 571-629 (889)
42 KOG0617 Ras suppressor protein 96.2 0.00021 4.6E-09 56.0 -4.3 87 116-204 27-116 (264)
43 PRK15370 E3 ubiquitin-protein 96.2 0.0055 1.2E-07 59.8 4.2 32 123-156 263-294 (754)
44 PRK15370 E3 ubiquitin-protein 96.1 0.0068 1.5E-07 59.2 4.7 32 215-247 325-357 (754)
45 PF12799 LRR_4: Leucine Rich r 96.1 0.004 8.6E-08 37.5 1.8 35 123-157 2-36 (44)
46 PLN03150 hypothetical protein; 95.9 0.012 2.7E-07 56.5 5.3 78 124-202 420-502 (623)
47 KOG2123 Uncharacterized conser 95.8 0.0017 3.6E-08 54.9 -0.9 78 144-224 18-97 (388)
48 KOG1259 Nischarin, modulator o 95.7 0.0038 8.2E-08 53.4 0.9 121 122-248 284-411 (490)
49 KOG2982 Uncharacterized conser 95.7 0.0051 1.1E-07 52.5 1.6 102 123-225 46-156 (418)
50 KOG0444 Cytoskeletal regulator 95.7 0.00023 5E-09 66.2 -6.9 139 110-250 210-376 (1255)
51 PLN03215 ascorbic acid mannose 95.6 0.01 2.3E-07 52.7 3.1 39 15-53 2-41 (373)
52 KOG2997 F-box protein FBX9 [Ge 95.3 0.0092 2E-07 51.1 1.8 39 13-51 103-146 (366)
53 KOG2982 Uncharacterized conser 95.3 0.0048 1E-07 52.7 0.0 130 95-226 71-210 (418)
54 PLN03150 hypothetical protein; 95.2 0.036 7.8E-07 53.4 5.6 70 111-181 431-501 (623)
55 KOG2739 Leucine-rich acidic nu 95.2 0.0033 7.1E-08 52.5 -1.3 99 143-246 41-153 (260)
56 PF12799 LRR_4: Leucine Rich r 94.7 0.04 8.6E-07 33.1 3.0 34 190-225 1-34 (44)
57 smart00367 LRR_CC Leucine-rich 94.4 0.02 4.4E-07 30.0 1.0 19 214-232 1-19 (26)
58 COG5238 RNA1 Ran GTPase-activa 94.1 0.025 5.5E-07 47.8 1.6 34 191-224 186-223 (388)
59 KOG1644 U2-associated snRNP A' 93.9 0.083 1.8E-06 42.8 4.0 57 121-178 63-121 (233)
60 KOG1859 Leucine-rich repeat pr 93.3 0.0099 2.1E-07 56.6 -2.4 133 115-254 102-250 (1096)
61 PF13516 LRR_6: Leucine Rich r 93.3 0.071 1.5E-06 27.2 1.9 23 144-166 1-23 (24)
62 KOG1644 U2-associated snRNP A' 93.0 0.064 1.4E-06 43.4 2.0 101 123-225 43-150 (233)
63 PF13013 F-box-like_2: F-box-l 92.4 0.13 2.7E-06 37.5 2.7 30 16-45 21-50 (109)
64 KOG1259 Nischarin, modulator o 92.1 0.055 1.2E-06 46.5 0.7 54 169-225 283-339 (490)
65 KOG2123 Uncharacterized conser 91.4 0.018 3.9E-07 48.8 -3.0 57 120-178 39-96 (388)
66 KOG0274 Cdc4 and related F-box 91.3 0.095 2.1E-06 49.3 1.3 40 11-50 102-141 (537)
67 KOG4658 Apoptotic ATPase [Sign 90.8 0.36 7.7E-06 48.3 4.8 121 122-245 523-651 (889)
68 COG4886 Leucine-rich repeat (L 90.7 0.11 2.5E-06 46.8 1.3 79 96-180 117-196 (394)
69 KOG0531 Protein phosphatase 1, 89.0 0.16 3.4E-06 46.4 0.7 102 118-225 91-196 (414)
70 KOG0472 Leucine-rich repeat pr 88.8 0.35 7.6E-06 43.3 2.7 17 87-103 380-396 (565)
71 KOG0531 Protein phosphatase 1, 87.0 0.093 2E-06 47.9 -2.0 123 120-247 70-197 (414)
72 KOG1859 Leucine-rich repeat pr 85.8 0.044 9.6E-07 52.4 -4.7 10 24-33 75-84 (1096)
73 PRK15386 type III secretion pr 85.7 0.81 1.8E-05 41.5 3.3 71 166-244 48-120 (426)
74 COG5238 RNA1 Ran GTPase-activa 85.6 1.6 3.4E-05 37.3 4.7 109 119-227 27-169 (388)
75 COG4886 Leucine-rich repeat (L 84.9 0.55 1.2E-05 42.4 2.0 84 118-203 112-199 (394)
76 smart00368 LRR_RI Leucine rich 83.4 1.2 2.7E-05 23.6 2.1 24 145-168 2-25 (28)
77 KOG4237 Extracellular matrix p 82.4 0.31 6.7E-06 43.5 -0.7 10 236-245 274-283 (498)
78 KOG0472 Leucine-rich repeat pr 82.0 0.72 1.6E-05 41.4 1.4 106 115-226 428-539 (565)
79 PF13504 LRR_7: Leucine rich r 81.9 1 2.2E-05 20.9 1.2 11 237-247 2-12 (17)
80 KOG3763 mRNA export factor TAP 80.0 1.7 3.6E-05 40.6 3.0 82 140-221 213-307 (585)
81 PF13306 LRR_5: Leucine rich r 79.0 2.3 4.9E-05 31.3 3.1 55 120-178 10-66 (129)
82 PF09372 PRANC: PRANC domain; 75.4 2.2 4.9E-05 30.2 2.1 25 15-39 70-94 (97)
83 KOG4237 Extracellular matrix p 72.2 1.5 3.2E-05 39.4 0.5 60 120-180 272-332 (498)
84 KOG4579 Leucine-rich repeat (L 69.7 0.86 1.9E-05 34.9 -1.3 80 123-203 28-113 (177)
85 KOG4579 Leucine-rich repeat (L 68.2 0.96 2.1E-05 34.6 -1.3 65 115-181 46-111 (177)
86 PF00560 LRR_1: Leucine Rich R 67.0 4.4 9.5E-05 20.0 1.4 13 123-135 1-13 (22)
87 KOG3926 F-box proteins [Amino 43.6 22 0.00047 30.3 2.6 51 13-63 198-255 (332)
88 KOG0532 Leucine-rich repeat (L 42.7 13 0.00028 35.3 1.3 109 113-225 157-270 (722)
89 KOG0532 Leucine-rich repeat (L 40.3 3.8 8.3E-05 38.6 -2.4 33 191-225 212-244 (722)
90 KOG4408 Putative Mg2+ and Co2+ 39.9 7.1 0.00015 34.2 -0.8 39 17-55 8-46 (386)
91 KOG3763 mRNA export factor TAP 37.0 25 0.00054 33.2 2.1 81 161-242 209-307 (585)
92 smart00369 LRR_TYP Leucine-ric 36.3 24 0.00053 17.8 1.3 12 145-156 2-13 (26)
93 smart00370 LRR Leucine-rich re 36.3 24 0.00053 17.8 1.3 12 145-156 2-13 (26)
94 PF06881 Elongin_A: RNA polyme 26.6 94 0.002 22.4 3.4 33 15-47 2-34 (109)
95 KOG4308 LRR-containing protein 25.7 6.7 0.00014 36.6 -3.5 17 189-205 289-305 (478)
96 smart00446 LRRcap occurring C- 21.8 64 0.0014 16.9 1.2 15 164-178 7-21 (26)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.5e-24 Score=178.30 Aligned_cols=253 Identities=18% Similarity=0.196 Sum_probs=183.2
Q ss_pred CCCCCHHHHHHHHccCChhhHHHhhhhhhhhHhhhccCC---ceEeecCCCCCcchhhhHHHHHHHHHHH----------
Q 042585 17 ISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFP---DLEIDKVKFLGPSKKLTVKTYGSEAALN---------- 83 (286)
Q Consensus 17 i~~LPdeil~~Ils~L~~~d~~~~~~vskrW~~lw~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~l~~---------- 83 (286)
++.|||||+..|||.|+.|++.+.+.|||||.++-+.-. .++...+...+ +..-+.+.+
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p--------~~l~~l~~rgV~v~Rlar~ 169 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHP--------DVLGRLLSRGVIVFRLARS 169 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccCh--------hHHHHHHhCCeEEEEcchh
Confidence 789999999999999999999999999999998644433 23444433332 111111111
Q ss_pred hHh--HHHHH--HHhCCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeecc-CCcCcccCCCccEEEcceee-e
Q 042585 84 FAN--RCISY--AIERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDVY-A 157 (286)
Q Consensus 84 ~~~--~~~~~--~~~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~-~ 157 (286)
+++ +...+ .....++.++++... .+...+.-.+..|.+|+.|.|.|..++. ...-.+.-.+|+.|+|+.|. +
T Consensus 170 ~~~~prlae~~~~frsRlq~lDLS~s~--it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~ 247 (419)
T KOG2120|consen 170 FMDQPRLAEHFSPFRSRLQHLDLSNSV--ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF 247 (419)
T ss_pred hhcCchhhhhhhhhhhhhHHhhcchhh--eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccccc
Confidence 111 11111 123457888887211 2455666678899999999999998855 11233456889999999999 9
Q ss_pred ChHHHHHHHhcCCCcceEEeeeccccce---eec---ccCCceEEecCcc--cChhhHHHHHhcCCCccEEecccccCcc
Q 042585 158 DDQVMNNLFAQSPLLQHLEFVRYNNLVN---VSS---CKNLKHLDLCDGS--YTDEWLNSQISGLPLLEQLHISLCNNIE 229 (286)
Q Consensus 158 ~~~~l~~l~~~cp~Le~L~l~~c~~~~~---~~~---~~~L~~L~l~~~~--~~~~~l~~~~~~~p~L~~L~l~~c~~~~ 229 (286)
+.++++.+..+|..|.+|++++|.-... +.+ .++|+.|+++++. +.+..+..+...||+|.+|++++|-.++
T Consensus 248 t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 248 TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK 327 (419)
T ss_pred chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence 9999999999999999999999965421 112 8999999999873 6667888999999999999999997776
Q ss_pred cccc----ccccccEEEeecccCCccccc-cccceeeeccCCCCCcchHHHHHHH
Q 042585 230 SITI----SSLRLKKLIINTCESNTIFSF-GSIALFSLALRKPLGLASREAQDFL 279 (286)
Q Consensus 230 ~~~i----~~p~L~~L~ls~c~~~~~~~~-~~~~l~s~~~~~~~~~~~~~~~~~l 279 (286)
+--+ .-+.|++|.++.|+.+....+ .--+.-++.+.+.||..++.+-+++
T Consensus 328 ~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~ 382 (419)
T KOG2120|consen 328 NDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELL 382 (419)
T ss_pred chHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHH
Confidence 6322 248999999999998876543 3333456677788898888665544
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.71 E-value=1.4e-18 Score=150.17 Aligned_cols=222 Identities=21% Similarity=0.231 Sum_probs=154.9
Q ss_pred CCCCHHHHHHHHccCChhhHHHhhhhhhhhHhh------hccCCceEeecCCCCCcchhhhHHHHHHHHHHHhHhHHHHH
Q 042585 18 SALPQPILQLIMSFLPFKQVVQICMVSKVWLQA------WHTFPDLEIDKVKFLGPSKKLTVKTYGSEAALNFANRCISY 91 (286)
Q Consensus 18 ~~LPdeil~~Ils~L~~~d~~~~~~vskrW~~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 91 (286)
-.||+|++..|||+|.++.+++++++|+.|..+ |+.+...+|....-.+ .|..+ +..
T Consensus 73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~---------VV~~~--------~~R 135 (483)
T KOG4341|consen 73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGG---------VVENM--------ISR 135 (483)
T ss_pred ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCc---------ceehH--------hhh
Confidence 459999999999999999999999999999875 6555555444332221 11111 111
Q ss_pred HHhCCceEEEEE-eccCCCcccCCCcchhccCCccEEEEeceee--cc-CCcCcccCCCccEEEcceee-eChHHHHHHH
Q 042585 92 AIERNVEELEVE-HLRRLDTWNSLPQMVLRSKSIKVLTLQNYKL--ES-LGNDDVKLLSLRKLHLSDVY-ADDQVMNNLF 166 (286)
Q Consensus 92 ~~~~~l~~L~l~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~--~~-~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~ 166 (286)
....++++.+. ... .....+-.....|+++++|.+.+|.. +. +......|++|+.|+|..|. +++..++.++
T Consensus 136 -cgg~lk~LSlrG~r~--v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 136 -CGGFLKELSLRGCRA--VGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred -hcccccccccccccc--CCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 12456777777 222 34455555666888888888888765 21 22234458888888888888 8888888888
Q ss_pred hcCCCcceEEeeeccccce-----eec---------------------------ccCCceEEecCc-ccChhhHHHHHhc
Q 042585 167 AQSPLLQHLEFVRYNNLVN-----VSS---------------------------CKNLKHLDLCDG-SYTDEWLNSQISG 213 (286)
Q Consensus 167 ~~cp~Le~L~l~~c~~~~~-----~~~---------------------------~~~L~~L~l~~~-~~~~~~l~~~~~~ 213 (286)
.+||+|+.|++++|..+.. +.. ++-+.++++..| .++|..+..+...
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence 8888888888888864311 000 344555555554 3777777777888
Q ss_pred CCCccEEecccccCcccccc-----ccccccEEEeecccCCccccccccce
Q 042585 214 LPLLEQLHISLCNNIESITI-----SSLRLKKLIINTCESNTIFSFGSIAL 259 (286)
Q Consensus 214 ~p~L~~L~l~~c~~~~~~~i-----~~p~L~~L~ls~c~~~~~~~~~~~~l 259 (286)
|..|+.|.+++|..+++..+ .+++|+.|.+++|+.+++..|+.++-
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r 343 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR 343 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc
Confidence 88888888888887766544 35899999999999988888776663
No 3
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.99 E-value=4.4e-10 Score=69.49 Aligned_cols=37 Identities=30% Similarity=0.579 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHHccCChhhHHHhhhhhhhhHhhhcc
Q 042585 17 ISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHT 53 (286)
Q Consensus 17 i~~LPdeil~~Ils~L~~~d~~~~~~vskrW~~lw~~ 53 (286)
|+.||+|++.+||++|+.+|+.+++.|||+|+++...
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~ 37 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAND 37 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTC
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCC
Confidence 6789999999999999999999999999999986543
No 4
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.86 E-value=1.3e-10 Score=101.35 Aligned_cols=158 Identities=21% Similarity=0.255 Sum_probs=112.5
Q ss_pred CceEEEEEeccCCCcccCCCcchhcc-CCccEEEEeceee---ccCCcCcccCCCccEEEcceee-eChHHHHHHHhcCC
Q 042585 96 NVEELEVEHLRRLDTWNSLPQMVLRS-KSIKVLTLQNYKL---ESLGNDDVKLLSLRKLHLSDVY-ADDQVMNNLFAQSP 170 (286)
Q Consensus 96 ~l~~L~l~~~~~~~~~~~l~~~~~~~-~~L~~L~L~~~~~---~~~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp 170 (286)
+=+++++...+.+...-.....+.+| ..|++|++.||.- .........||++++|.+.+|. ++|..+..+...|+
T Consensus 111 ~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~ 190 (483)
T KOG4341|consen 111 CWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCR 190 (483)
T ss_pred cceeeehhcchhcCCCcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcc
Confidence 45666766333222223333445555 5899999999764 2233345679999999999999 99999999999999
Q ss_pred CcceEEeeeccccceee-----c-ccCCceEEecCcc-cChhhHHHHHhcCCCccEEecccccCccccccc-----cccc
Q 042585 171 LLQHLEFVRYNNLVNVS-----S-CKNLKHLDLCDGS-YTDEWLNSQISGLPLLEQLHISLCNNIESITIS-----SLRL 238 (286)
Q Consensus 171 ~Le~L~l~~c~~~~~~~-----~-~~~L~~L~l~~~~-~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~-----~p~L 238 (286)
+|+.|++..|...++.. . ||+|++|+++.|. +..++++.+.++|.+|+.+..+||...+.-.+. .+.+
T Consensus 191 ~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i 270 (483)
T KOG4341|consen 191 KLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEI 270 (483)
T ss_pred hhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHh
Confidence 99999999997764432 2 9999999999874 777788888899999998888888665432221 2344
Q ss_pred cEEEeecccCCcccc
Q 042585 239 KKLIINTCESNTIFS 253 (286)
Q Consensus 239 ~~L~ls~c~~~~~~~ 253 (286)
.++++.+|..+|+..
T Consensus 271 ~~lnl~~c~~lTD~~ 285 (483)
T KOG4341|consen 271 LKLNLQHCNQLTDED 285 (483)
T ss_pred hccchhhhccccchH
Confidence 445555565555544
No 5
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=6.3e-10 Score=93.30 Aligned_cols=136 Identities=21% Similarity=0.127 Sum_probs=94.0
Q ss_pred HHhCCceEEEEE-eccCCCcccCCCcchhccCCccEEEEeceeecc---CCcCcccCCCccEEEcceee--eChHHHHHH
Q 042585 92 AIERNVEELEVE-HLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLES---LGNDDVKLLSLRKLHLSDVY--ADDQVMNNL 165 (286)
Q Consensus 92 ~~~~~l~~L~l~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~---~~~~~~~~~~L~~L~L~~~~--~~~~~l~~l 165 (286)
|-..++++++++ +.+ .+...+.-.+.+|++|..|+|++|.... ......--++|+.|+|++++ +.+..+..+
T Consensus 231 AkN~~L~~lnlsm~sG--~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL 308 (419)
T KOG2120|consen 231 AKNSNLVRLNLSMCSG--FTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL 308 (419)
T ss_pred hccccceeeccccccc--cchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH
Confidence 334788888888 322 2455555567789999999999987622 11122237889999999988 778888888
Q ss_pred HhcCCCcceEEeeeccccce-----eecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCcc
Q 042585 166 FAQSPLLQHLEFVRYNNLVN-----VSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIE 229 (286)
Q Consensus 166 ~~~cp~Le~L~l~~c~~~~~-----~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~ 229 (286)
...||+|.+|++++|....+ +..++.|++|.++.|...+.....-....|.|.+|++.||-.-+
T Consensus 309 ~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt 377 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDT 377 (419)
T ss_pred HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCch
Confidence 89999999999998866532 11188888888887753332211224577889999988875443
No 6
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.57 E-value=2.2e-08 Score=62.11 Aligned_cols=38 Identities=37% Similarity=0.608 Sum_probs=31.7
Q ss_pred cCCCCCHHHHHHHHccCChhhHHHhhhhhhhhHhhhcc
Q 042585 16 RISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHT 53 (286)
Q Consensus 16 ~i~~LPdeil~~Ils~L~~~d~~~~~~vskrW~~lw~~ 53 (286)
.|++||+|++.+||++|+.+|+.+++.|||+|+++...
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTT
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcC
Confidence 35789999999999999999999999999999997654
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.55 E-value=8e-08 Score=84.08 Aligned_cols=150 Identities=20% Similarity=0.190 Sum_probs=91.0
Q ss_pred hCCceEEEEEeccCCCcccCCCcchhcc---CCccEEEEeceeecc-----CCcCcccC-CCccEEEcceeeeChHH---
Q 042585 94 ERNVEELEVEHLRRLDTWNSLPQMVLRS---KSIKVLTLQNYKLES-----LGNDDVKL-LSLRKLHLSDVYADDQV--- 161 (286)
Q Consensus 94 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~---~~L~~L~L~~~~~~~-----~~~~~~~~-~~L~~L~L~~~~~~~~~--- 161 (286)
..++++++++... .....+..+... ++|++|++++|.+.. .......+ ++|+.|+|.+|.++...
T Consensus 80 ~~~L~~L~l~~~~---~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 80 GCGLQELDLSDNA---LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred cCceeEEEccCCC---CChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 3578888887222 111222333333 448889998887731 00112345 78899999988855333
Q ss_pred HHHHHhcCCCcceEEeeeccccc----eee----cccCCceEEecCcccChhhHH---HHHhcCCCccEEecccccCccc
Q 042585 162 MNNLFAQSPLLQHLEFVRYNNLV----NVS----SCKNLKHLDLCDGSYTDEWLN---SQISGLPLLEQLHISLCNNIES 230 (286)
Q Consensus 162 l~~l~~~cp~Le~L~l~~c~~~~----~~~----~~~~L~~L~l~~~~~~~~~l~---~~~~~~p~L~~L~l~~c~~~~~ 230 (286)
+......++.|+.|++.+|.... .+. ..++|++|++.+|.+++.... .....+|+|++|++++|. +++
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~ 235 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTD 235 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-Cch
Confidence 33344567788999888765331 111 145889999988877654432 334567889999988874 222
Q ss_pred ccc---------ccccccEEEeeccc
Q 042585 231 ITI---------SSLRLKKLIINTCE 247 (286)
Q Consensus 231 ~~i---------~~p~L~~L~ls~c~ 247 (286)
.++ ..+.|++|++++|.
T Consensus 236 ~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 236 AGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHHHHhccCCCceEEEccCCC
Confidence 111 12688888888884
No 8
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.51 E-value=6e-08 Score=89.60 Aligned_cols=115 Identities=27% Similarity=0.365 Sum_probs=83.7
Q ss_pred cCCCccEEEcceee-eChHHHHHHHhcCCCcceEEeeec-cccc-------eeec-ccCCceEEecCcc-cChhhHHHHH
Q 042585 143 KLLSLRKLHLSDVY-ADDQVMNNLFAQSPLLQHLEFVRY-NNLV-------NVSS-CKNLKHLDLCDGS-YTDEWLNSQI 211 (286)
Q Consensus 143 ~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c-~~~~-------~~~~-~~~L~~L~l~~~~-~~~~~l~~~~ 211 (286)
.+|+|+.|++.+|. +++.++..+...||.|++|++++| .... .+.. +++|+.|++..+. +++.++..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 47888888888887 777777778888888888888873 2211 1111 7888888888776 7777777777
Q ss_pred hcCCCccEEecccccCccccccc-----cccccEEEeecccCCcccccccc
Q 042585 212 SGLPLLEQLHISLCNNIESITIS-----SLRLKKLIINTCESNTIFSFGSI 257 (286)
Q Consensus 212 ~~~p~L~~L~l~~c~~~~~~~i~-----~p~L~~L~ls~c~~~~~~~~~~~ 257 (286)
..||+|++|.+.+|..+++.++. +|+|++|++++|..+++.++..+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~ 316 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL 316 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH
Confidence 77888888887778776665544 47888888888877766544444
No 9
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.50 E-value=1.8e-08 Score=93.01 Aligned_cols=163 Identities=24% Similarity=0.293 Sum_probs=109.9
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEece-ee-c-c---CCcCcccCCCccEEEcceee-eChHHHHHHHh
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNY-KL-E-S---LGNDDVKLLSLRKLHLSDVY-ADDQVMNNLFA 167 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~-~-~---~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~ 167 (286)
++++++.+..+. ......+-..+..|++|+.|++++| .. . . .......+++|+.|++.++. ++|.++..++.
T Consensus 188 ~~L~~l~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 188 PLLKRLSLSGCS-KITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred chhhHhhhcccc-cCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 566666666221 0122224455668899999999873 22 1 1 11234458999999999999 99999999999
Q ss_pred cCCCcceEEeeeccccceeec------ccCCceEEecCcc-cChhhHHHHHhcCCCccEEecccc---cCccccccc---
Q 042585 168 QSPLLQHLEFVRYNNLVNVSS------CKNLKHLDLCDGS-YTDEWLNSQISGLPLLEQLHISLC---NNIESITIS--- 234 (286)
Q Consensus 168 ~cp~Le~L~l~~c~~~~~~~~------~~~L~~L~l~~~~-~~~~~l~~~~~~~p~L~~L~l~~c---~~~~~~~i~--- 234 (286)
.||+|+.|.+.+|...++.+. +++|++|++.+|. +++.++..+..+||+|+.|.+.++ ..+++..+.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 999999999888875433222 8999999999775 557777788888998888776554 445555433
Q ss_pred --cc-cccEEEeecccCCccccccccc
Q 042585 235 --SL-RLKKLIINTCESNTIFSFGSIA 258 (286)
Q Consensus 235 --~p-~L~~L~ls~c~~~~~~~~~~~~ 258 (286)
.+ .+..+.+.+|+.++...+....
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 11 5666666777776666555544
No 10
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.47 E-value=1.6e-07 Score=55.91 Aligned_cols=34 Identities=35% Similarity=0.571 Sum_probs=31.7
Q ss_pred CCHHHHHHHHccCChhhHHHhhhhhhhhHhhhcc
Q 042585 20 LPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHT 53 (286)
Q Consensus 20 LPdeil~~Ils~L~~~d~~~~~~vskrW~~lw~~ 53 (286)
||+|++.+||++++.+|+.+++.|||+|+.+...
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999999999999999999999987654
No 11
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=4.4e-08 Score=86.21 Aligned_cols=151 Identities=22% Similarity=0.265 Sum_probs=103.4
Q ss_pred CCceEEEEE-eccCCCcccCCCcchhccCCccEEEEeceeeccCC--cCcccCCCccEEEcceeeeChHHHHHHHhcCCC
Q 042585 95 RNVEELEVE-HLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLG--NDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPL 171 (286)
Q Consensus 95 ~~l~~L~l~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~ 171 (286)
.++++|+|+ +.. ..+..+-..+...++|+.|+|+.+.+..+. .....+++||+|.|..|-++..++..++..||+
T Consensus 146 ~~v~~LdLS~NL~--~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPs 223 (505)
T KOG3207|consen 146 PNVRDLDLSRNLF--HNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPS 223 (505)
T ss_pred CcceeecchhhhH--HhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCc
Confidence 466777777 332 133444445567799999999998774321 123359999999999999999999999999999
Q ss_pred cceEEeeeccccce----eecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccC--cc--cc-----ccccccc
Q 042585 172 LQHLEFVRYNNLVN----VSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNN--IE--SI-----TISSLRL 238 (286)
Q Consensus 172 Le~L~l~~c~~~~~----~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~--~~--~~-----~i~~p~L 238 (286)
|+.|.+........ ..++.+|+.|+++++.+-+..........|.|+.|.++.|.- +. ++ ..--|.|
T Consensus 224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL 303 (505)
T KOG3207|consen 224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL 303 (505)
T ss_pred HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence 99999997643322 223788999999977655433335667888888888877631 11 11 1112677
Q ss_pred cEEEeeccc
Q 042585 239 KKLIINTCE 247 (286)
Q Consensus 239 ~~L~ls~c~ 247 (286)
+.|.++..+
T Consensus 304 ~~L~i~~N~ 312 (505)
T KOG3207|consen 304 EYLNISENN 312 (505)
T ss_pred eeeecccCc
Confidence 777766543
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.43 E-value=1.4e-07 Score=82.62 Aligned_cols=152 Identities=20% Similarity=0.130 Sum_probs=101.0
Q ss_pred CCceEEEEEec-cC--CCcccCCCcchhccCCccEEEEeceeecc-CCcCcccC---CCccEEEcceeeeChHHHHHHH-
Q 042585 95 RNVEELEVEHL-RR--LDTWNSLPQMVLRSKSIKVLTLQNYKLES-LGNDDVKL---LSLRKLHLSDVYADDQVMNNLF- 166 (286)
Q Consensus 95 ~~l~~L~l~~~-~~--~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~---~~L~~L~L~~~~~~~~~l~~l~- 166 (286)
.+++++.+... .. +.....++..+..+++|+.|++++|.+.. .......+ ++|++|++.++.+++.++..+.
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 45888888721 10 01112334455678899999999987742 11112223 4599999999997766655443
Q ss_pred --hcC-CCcceEEeeecccc----ce----eecccCCceEEecCcccChhhHHHHH---hcCCCccEEecccccCccccc
Q 042585 167 --AQS-PLLQHLEFVRYNNL----VN----VSSCKNLKHLDLCDGSYTDEWLNSQI---SGLPLLEQLHISLCNNIESIT 232 (286)
Q Consensus 167 --~~c-p~Le~L~l~~c~~~----~~----~~~~~~L~~L~l~~~~~~~~~l~~~~---~~~p~L~~L~l~~c~~~~~~~ 232 (286)
..+ ++|++|++.+|... .. +..+++|+.|++.++.+++..+..+. ...++|++|++++|.. ++.+
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i-~~~~ 209 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL-TDEG 209 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc-ChHH
Confidence 345 89999999988643 11 11267999999999988876554443 3556999999999842 2221
Q ss_pred --------cccccccEEEeeccc
Q 042585 233 --------ISSLRLKKLIINTCE 247 (286)
Q Consensus 233 --------i~~p~L~~L~ls~c~ 247 (286)
-..++|+.|++++|.
T Consensus 210 ~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 210 ASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHHHhcccCCCCEEecCCCc
Confidence 124789999999985
No 13
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.30 E-value=3.6e-07 Score=87.56 Aligned_cols=123 Identities=23% Similarity=0.192 Sum_probs=83.0
Q ss_pred CCccEEEEeceee--ccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccceeec--ccCCceEE
Q 042585 122 KSIKVLTLQNYKL--ESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVNVSS--CKNLKHLD 196 (286)
Q Consensus 122 ~~L~~L~L~~~~~--~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~--~~~L~~L~ 196 (286)
.+|++|+++|-.. ..|.. ...-||+|++|.+.+..+...++..+..++|+|+.||++++....-.++ +++|+.|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 6888888888443 33322 2334999999999999966666888899999999999998754322333 78888888
Q ss_pred ecCcccCh-hhHHHHHhcCCCccEEecccccCcccc---------ccccccccEEEeec
Q 042585 197 LCDGSYTD-EWLNSQISGLPLLEQLHISLCNNIESI---------TISSLRLKKLIINT 245 (286)
Q Consensus 197 l~~~~~~~-~~l~~~~~~~p~L~~L~l~~c~~~~~~---------~i~~p~L~~L~ls~ 245 (286)
+.+-.+.. ..+ .-.....+|+.||++.-.....- +...|+|+.||.|+
T Consensus 202 mrnLe~e~~~~l-~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 202 MRNLEFESYQDL-IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred ccCCCCCchhhH-HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 87766554 222 44567788888888774332221 11247777777764
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.27 E-value=1.3e-06 Score=69.58 Aligned_cols=104 Identities=24% Similarity=0.174 Sum_probs=45.7
Q ss_pred ccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc-----ceeecccCCce
Q 042585 120 RSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL-----VNVSSCKNLKH 194 (286)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~-----~~~~~~~~L~~ 194 (286)
.+.+|+.|+|+++.+... .....+++|++|+++++.+++-+ +.+...||+|++|.+++.... ..+..+|+|+.
T Consensus 40 ~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp T-TT--EEE-TTS--S---TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--E
T ss_pred hhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcce
Confidence 457888899988888443 44556888999999888855421 123356889999988754322 22333888888
Q ss_pred EEecCcccChh-h-HHHHHhcCCCccEEecccc
Q 042585 195 LDLCDGSYTDE-W-LNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 195 L~l~~~~~~~~-~-l~~~~~~~p~L~~L~l~~c 225 (286)
|++.++.+++. . -..+...+|+|+.|+-...
T Consensus 118 L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 118 LSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp EE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred eeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 88887766542 2 2355678888888886654
No 15
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.23 E-value=3.8e-06 Score=84.67 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=25.1
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeecc-CCcCcccCCCccEEEcceee
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDVY 156 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~ 156 (286)
.++++|+++... ....+|..+.++++|++|+|++|.+.. .+.....+++|++|+|.++.
T Consensus 164 ~~L~~L~L~~n~---l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 223 (968)
T PLN00113 164 SSLKVLDLGGNV---LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN 223 (968)
T ss_pred CCCCEEECccCc---ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc
Confidence 455666665111 112344444455555555555544421 11122234444444444443
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.22 E-value=1.8e-06 Score=88.26 Aligned_cols=130 Identities=18% Similarity=0.256 Sum_probs=78.1
Q ss_pred CCccEEEEeceee-ccCCcCcccCCCccEEEcceee-eChHHHHHHHhcCCCcceEEeeeccccceeec-ccCCceEEec
Q 042585 122 KSIKVLTLQNYKL-ESLGNDDVKLLSLRKLHLSDVY-ADDQVMNNLFAQSPLLQHLEFVRYNNLVNVSS-CKNLKHLDLC 198 (286)
Q Consensus 122 ~~L~~L~L~~~~~-~~~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~-~~~L~~L~l~ 198 (286)
++|+.|+|++|.. ..++....++++|+.|+|.+|. +.. +... ..+++|+.|++++|.....+.. .++|+.|++.
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~--LP~~-~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls 854 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET--LPTG-INLESLESLDLSGCSRLRTFPDISTNISDLNLS 854 (1153)
T ss_pred ccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe--eCCC-CCccccCEEECCCCCccccccccccccCEeECC
Confidence 3455555555432 1121223446666666666664 321 1110 1356666667666655444333 5677777777
Q ss_pred CcccChhhHHHHHhcCCCccEEecccccCccccccc---cccccEEEeecccCCccccccc
Q 042585 199 DGSYTDEWLNSQISGLPLLEQLHISLCNNIESITIS---SLRLKKLIINTCESNTIFSFGS 256 (286)
Q Consensus 199 ~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~---~p~L~~L~ls~c~~~~~~~~~~ 256 (286)
++.+.. +..-...+++|++|++.+|.++..+... .+.|+.+++++|..++...+.+
T Consensus 855 ~n~i~~--iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~ 913 (1153)
T PLN03210 855 RTGIEE--VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNG 913 (1153)
T ss_pred CCCCcc--ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCC
Confidence 665543 1123467899999999999988877654 3678888999999887665544
No 17
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.20 E-value=3.9e-06 Score=84.54 Aligned_cols=128 Identities=23% Similarity=0.213 Sum_probs=69.8
Q ss_pred cCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc----eeecccCCceEE
Q 042585 121 SKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV----NVSSCKNLKHLD 196 (286)
Q Consensus 121 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~----~~~~~~~L~~L~ 196 (286)
+++|+.|++++|.+....+.....++|++|+|+++.++... ...+..+++|+.|++++|.... .+..+++|+.|+
T Consensus 451 l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 529 (968)
T PLN00113 451 MPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAV-PRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD 529 (968)
T ss_pred CCCCcEEECcCceeeeecCcccccccceEEECcCCccCCcc-ChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEE
Confidence 34444444444444221122233455556666555532211 1123456777777777664332 222367888888
Q ss_pred ecCcccChhhHHHHHhcCCCccEEecccccCcccccc---ccccccEEEeecccCCc
Q 042585 197 LCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITI---SSLRLKKLIINTCESNT 250 (286)
Q Consensus 197 l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i---~~p~L~~L~ls~c~~~~ 250 (286)
+++|.++.... .....+++|+.|++++|.....+.- ..+.|+.|++++|....
T Consensus 530 Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 530 LSHNQLSGQIP-ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred CCCCcccccCC-hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 88776553211 3345678888888888765433321 13578888888876544
No 18
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.12 E-value=6.2e-06 Score=84.31 Aligned_cols=119 Identities=23% Similarity=0.289 Sum_probs=48.7
Q ss_pred CCccEEEEeceeeccCCcCcccCCCccEEEcceee-eChHHHHHHHhcCCCcceEEeeeccccceeec----ccCCceEE
Q 042585 122 KSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY-ADDQVMNNLFAQSPLLQHLEFVRYNNLVNVSS----CKNLKHLD 196 (286)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~----~~~L~~L~ 196 (286)
.+|+.|++.++.+...+.....+++|+.|+|+++. +..- .. ...+++|+.|++.+|.....+.. +++|+.|+
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~i--p~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEI--PD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcC--Cc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 44555555554443322233345555555555443 2110 01 23355555555555543322211 45555555
Q ss_pred ecCcccChhhHHHHHhcCCCccEEecccccCccccccccccccEEEeec
Q 042585 197 LCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITISSLRLKKLIINT 245 (286)
Q Consensus 197 l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~~p~L~~L~ls~ 245 (286)
+.+|..... + .....+++|++|++++|..+..+.-..++|+.|++++
T Consensus 688 L~~c~~L~~-L-p~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~ 734 (1153)
T PLN03210 688 MSRCENLEI-L-PTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDE 734 (1153)
T ss_pred CCCCCCcCc-c-CCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCC
Confidence 554421110 0 0111445555555555544333322223444444433
No 19
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.12 E-value=1.9e-06 Score=76.09 Aligned_cols=131 Identities=21% Similarity=0.183 Sum_probs=94.8
Q ss_pred ccCCccEEEEeceeeccCC--cCcccCCCccEEEcceeee-ChHHHHHHHhcCCCcceEEeeecccc----ceee-cccC
Q 042585 120 RSKSIKVLTLQNYKLESLG--NDDVKLLSLRKLHLSDVYA-DDQVMNNLFAQSPLLQHLEFVRYNNL----VNVS-SCKN 191 (286)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~--~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~-~~~~ 191 (286)
+.++|+.+.|.++.+.... .....||+++.|+|+.+-+ .-..+..++...|+||.|+++..... .... ..++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4578888899998884421 2345699999999999984 44568889999999999999864322 2222 2899
Q ss_pred CceEEecCcccChhhHHHHHhcCCCccEEecccccCccccccc---cccccEEEeecccCCc
Q 042585 192 LKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITIS---SLRLKKLIINTCESNT 250 (286)
Q Consensus 192 L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~---~p~L~~L~ls~c~~~~ 250 (286)
||.|.+..|.++-..+..+...+|+|+.|.+.+......-... ...|+.|+|++....+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~ 260 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID 260 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc
Confidence 9999999999998888899999999999999986421111100 1356666666655444
No 20
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.02 E-value=2e-06 Score=68.39 Aligned_cols=126 Identities=21% Similarity=0.233 Sum_probs=46.0
Q ss_pred hhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc---eee-cccCCc
Q 042585 118 VLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV---NVS-SCKNLK 193 (286)
Q Consensus 118 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~---~~~-~~~~L~ 193 (286)
..++.+++.|+|.++.+.........+.+|+.|+|+++.++. ++. +..++.|++|++++..... .+. .+|+|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~--l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK--LEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS---S-CHHHHHH-TT--
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCcc--ccC-ccChhhhhhcccCCCCCCccccchHHhCCcCC
Confidence 345667899999998884432333458899999999999543 222 3458999999998654321 122 289999
Q ss_pred eEEecCcccCh-hhHHHHHhcCCCccEEecccccCccc-----ccc-ccccccEEEeeccc
Q 042585 194 HLDLCDGSYTD-EWLNSQISGLPLLEQLHISLCNNIES-----ITI-SSLRLKKLIINTCE 247 (286)
Q Consensus 194 ~L~l~~~~~~~-~~l~~~~~~~p~L~~L~l~~c~~~~~-----~~i-~~p~L~~L~ls~c~ 247 (286)
.|.+.++.+.+ +.+ .....+|+|+.|++.|++-... ..+ ..|+|+.||-..+.
T Consensus 92 ~L~L~~N~I~~l~~l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 92 ELYLSNNKISDLNEL-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp EEE-TTS---SCCCC-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred EEECcCCcCCChHHh-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEcc
Confidence 99999887654 222 3345899999999999653221 112 25999999877664
No 21
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.96 E-value=1.7e-05 Score=68.34 Aligned_cols=153 Identities=20% Similarity=0.283 Sum_probs=91.5
Q ss_pred CCceEEEEE-eccCCCcccCCCcchhccCCccEEEEeceeeccC--C------------cCcccCCCccEEEcceeeeCh
Q 042585 95 RNVEELEVE-HLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESL--G------------NDDVKLLSLRKLHLSDVYADD 159 (286)
Q Consensus 95 ~~l~~L~l~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~--~------------~~~~~~~~L~~L~L~~~~~~~ 159 (286)
+.++.++|+ +...+.....+...+.+|.+|++|.|.+|.+... . .....-|.|+++...++++.+
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 378999998 4433344455556677899999999999887210 0 012345678888888888433
Q ss_pred ---HHHHHHHhcCCCcceEEeeecccc--------ceeecccCCceEEecCcccChhh---HHHHHhcCCCccEEecccc
Q 042585 160 ---QVMNNLFAQSPLLQHLEFVRYNNL--------VNVSSCKNLKHLDLCDGSYTDEW---LNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 160 ---~~l~~l~~~cp~Le~L~l~~c~~~--------~~~~~~~~L~~L~l~~~~~~~~~---l~~~~~~~p~L~~L~l~~c 225 (286)
..+...+..+|.|+++.+...... ..+.-||+|+.|++.++.++..+ +.......|+|+.|.+++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 334555667788888877644321 11112788888888776665433 2222334556777777777
Q ss_pred cCc--------cccccccccccEEEeeccc
Q 042585 226 NNI--------ESITISSLRLKKLIINTCE 247 (286)
Q Consensus 226 ~~~--------~~~~i~~p~L~~L~ls~c~ 247 (286)
--- ..+.-.+|.|+.|.+.+|.
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcch
Confidence 211 1112225677777777663
No 22
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.68 E-value=1.1e-05 Score=73.92 Aligned_cols=13 Identities=31% Similarity=0.314 Sum_probs=5.7
Q ss_pred CCCccEEEcceee
Q 042585 144 LLSLRKLHLSDVY 156 (286)
Q Consensus 144 ~~~L~~L~L~~~~ 156 (286)
+++|+.|+|+++.
T Consensus 316 tqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 316 TQKLKELDLSSNR 328 (873)
T ss_pred cccceeEeccccc
Confidence 4444444444443
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.40 E-value=5.2e-05 Score=72.96 Aligned_cols=105 Identities=26% Similarity=0.201 Sum_probs=61.2
Q ss_pred ccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc--ceeecccCCceEE
Q 042585 120 RSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL--VNVSSCKNLKHLD 196 (286)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~~~~L~~L~ 196 (286)
..++|+.|+|+.+.+..++. ...+++.|+.|.|+++.++.-. .-+..|+.|+.|...+.... ..+..+|+|+.++
T Consensus 381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp--~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lD 458 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP--DTVANLGRLHTLRAHSNQLLSFPELAQLPQLKVLD 458 (1081)
T ss_pred cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh--HHHHhhhhhHHHhhcCCceeechhhhhcCcceEEe
Confidence 44666666666665543322 2234666666666666533211 22345777777766533211 2333389999999
Q ss_pred ecCcccChhhHHHHHhcCCCccEEecccccC
Q 042585 197 LCDGSYTDEWLNSQISGLPLLEQLHISLCNN 227 (286)
Q Consensus 197 l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~ 227 (286)
++.+.++...+ .....-|+|++|+++|.+.
T Consensus 459 lS~N~L~~~~l-~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 459 LSCNNLSEVTL-PEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred cccchhhhhhh-hhhCCCcccceeeccCCcc
Confidence 99877665422 2223337999999999765
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.37 E-value=0.00012 Score=63.16 Aligned_cols=127 Identities=19% Similarity=0.181 Sum_probs=62.5
Q ss_pred CCccEEEEeceeeccC-----CcCcccCCCccEEEcceeeeChHHH---HHHHhcCCCcceEEeeecccc--------ce
Q 042585 122 KSIKVLTLQNYKLESL-----GNDDVKLLSLRKLHLSDVYADDQVM---NNLFAQSPLLQHLEFVRYNNL--------VN 185 (286)
Q Consensus 122 ~~L~~L~L~~~~~~~~-----~~~~~~~~~L~~L~L~~~~~~~~~l---~~l~~~cp~Le~L~l~~c~~~--------~~ 185 (286)
+.|+++...++++... .......|.|+.+++..+.+...++ ..-+..||+|+.|+|.+.... ..
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 4555555555555221 0112235566666666666443333 222345666666666654332 11
Q ss_pred eecccCCceEEecCcccChhh----HHHHHhcCCCccEEecccccCccccc----cc---cccccEEEeecccC
Q 042585 186 VSSCKNLKHLDLCDGSYTDEW----LNSQISGLPLLEQLHISLCNNIESIT----IS---SLRLKKLIINTCES 248 (286)
Q Consensus 186 ~~~~~~L~~L~l~~~~~~~~~----l~~~~~~~p~L~~L~l~~c~~~~~~~----i~---~p~L~~L~ls~c~~ 248 (286)
+...|+|+.|++.+|.+.+.+ +..+....|+|+.|.+.+|.--.+-. ++ -|.|+.|.+++|+.
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 112456666666666544432 33444456677777766653211110 00 26677777776654
No 25
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=5.3e-05 Score=60.65 Aligned_cols=90 Identities=23% Similarity=0.245 Sum_probs=62.2
Q ss_pred ccCCCcchhccCCccEEEEeceee-ccCCcCcccCCCccEEEcceee-eChHHHHHHHhcCCCcceEEeeeccccceeec
Q 042585 111 WNSLPQMVLRSKSIKVLTLQNYKL-ESLGNDDVKLLSLRKLHLSDVY-ADDQVMNNLFAQSPLLQHLEFVRYNNLVNVSS 188 (286)
Q Consensus 111 ~~~l~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~ 188 (286)
.+.+|..-..--.++.++=+++.+ .........++.++.|++.+|. ++|+.++.+....|+|++|++++|..+++.+.
T Consensus 90 ~~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL 169 (221)
T KOG3864|consen 90 YFSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL 169 (221)
T ss_pred eecCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH
Confidence 345664433333455555555444 2222344568889999999999 99999999988899999999999877655443
Q ss_pred -----ccCCceEEecCc
Q 042585 189 -----CKNLKHLDLCDG 200 (286)
Q Consensus 189 -----~~~L~~L~l~~~ 200 (286)
+++|+.|.+.+-
T Consensus 170 ~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 170 ACLLKLKNLRRLHLYDL 186 (221)
T ss_pred HHHHHhhhhHHHHhcCc
Confidence 677777777654
No 26
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.13 E-value=0.00039 Score=67.03 Aligned_cols=157 Identities=17% Similarity=0.184 Sum_probs=90.8
Q ss_pred HHHHHhCCceEEEEEeccCCCcccCCCcchh-ccCCccEEEEeceee--ccCCcCcccCCCccEEEcceeeeChHHHHHH
Q 042585 89 ISYAIERNVEELEVEHLRRLDTWNSLPQMVL-RSKSIKVLTLQNYKL--ESLGNDDVKLLSLRKLHLSDVYADDQVMNNL 165 (286)
Q Consensus 89 ~~~~~~~~l~~L~l~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l 165 (286)
+......++++|++.... .....+|..++ .+|+|++|.+.+-.+ +.+.....+||+|..|+++++.+++- .-
T Consensus 116 Ln~~sr~nL~~LdI~G~~--~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~G 190 (699)
T KOG3665|consen 116 LNEESRQNLQHLDISGSE--LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SG 190 (699)
T ss_pred HhHHHHHhhhhcCccccc--hhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HH
Confidence 344445688888887110 01223333333 468999999988555 22333455799999999999886553 33
Q ss_pred HhcCCCcceEEeeecccc-----ceeecccCCceEEecCcccChhh--HH---HHHhcCCCccEEecccccCcc----cc
Q 042585 166 FAQSPLLQHLEFVRYNNL-----VNVSSCKNLKHLDLCDGSYTDEW--LN---SQISGLPLLEQLHISLCNNIE----SI 231 (286)
Q Consensus 166 ~~~cp~Le~L~l~~c~~~-----~~~~~~~~L~~L~l~~~~~~~~~--l~---~~~~~~p~L~~L~l~~c~~~~----~~ 231 (286)
.+.-++|+.|.+.+-... .++-.+.+|+.|+++.....+.. +. .-...+|+|+.|+.+|.+--. .+
T Consensus 191 IS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~l 270 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEEL 270 (699)
T ss_pred HhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHH
Confidence 456788888877653322 22333888999999854333221 11 112357899999988843211 11
Q ss_pred ccccccccEEEeecccCCc
Q 042585 232 TISSLRLKKLIINTCESNT 250 (286)
Q Consensus 232 ~i~~p~L~~L~ls~c~~~~ 250 (286)
-..-|+|+.+..-+|....
T Consensus 271 l~sH~~L~~i~~~~~~~~~ 289 (699)
T KOG3665|consen 271 LNSHPNLQQIAALDCLALS 289 (699)
T ss_pred HHhCccHhhhhhhhhhccc
Confidence 1234666666544443333
No 27
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.12 E-value=0.00033 Score=64.66 Aligned_cols=86 Identities=17% Similarity=0.196 Sum_probs=51.2
Q ss_pred chhccCCccEEEEeceeeccCCcCccc-CCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----ceeecccC
Q 042585 117 MVLRSKSIKVLTLQNYKLESLGNDDVK-LLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVSSCKN 191 (286)
Q Consensus 117 ~~~~~~~L~~L~L~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~~~~~ 191 (286)
.+.+.++|+.+++..+.+... |...+ ..+|++|.|.++.++.-.-+. ++..|.||.|+|+..... ..+...++
T Consensus 97 ~f~nl~nLq~v~l~~N~Lt~I-P~f~~~sghl~~L~L~~N~I~sv~se~-L~~l~alrslDLSrN~is~i~~~sfp~~~n 174 (873)
T KOG4194|consen 97 FFYNLPNLQEVNLNKNELTRI-PRFGHESGHLEKLDLRHNLISSVTSEE-LSALPALRSLDLSRNLISEIPKPSFPAKVN 174 (873)
T ss_pred HHhcCCcceeeeeccchhhhc-ccccccccceeEEeeeccccccccHHH-HHhHhhhhhhhhhhchhhcccCCCCCCCCC
Confidence 456778888888888777443 33333 556888888877733322222 234677777777753221 22333566
Q ss_pred CceEEecCcccCh
Q 042585 192 LKHLDLCDGSYTD 204 (286)
Q Consensus 192 L~~L~l~~~~~~~ 204 (286)
+++|+++++.+++
T Consensus 175 i~~L~La~N~It~ 187 (873)
T KOG4194|consen 175 IKKLNLASNRITT 187 (873)
T ss_pred ceEEeeccccccc
Confidence 7777777666554
No 28
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.02 E-value=1.4e-05 Score=62.42 Aligned_cols=61 Identities=26% Similarity=0.339 Sum_probs=29.8
Q ss_pred CCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceee--eChHHHHHHHhcCCCcceEEee
Q 042585 114 LPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY--ADDQVMNNLFAQSPLLQHLEFV 178 (286)
Q Consensus 114 l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le~L~l~ 178 (286)
.|+.+....+|++|++.++.++.+++...++|.|+.|++..++ +...+ +.++|.||.|++.
T Consensus 48 vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprg----fgs~p~levldlt 110 (264)
T KOG0617|consen 48 VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRG----FGSFPALEVLDLT 110 (264)
T ss_pred cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccc----cCCCchhhhhhcc
Confidence 3444445555555555555554443444445555555555444 12222 2335555555554
No 29
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.95 E-value=0.00031 Score=45.56 Aligned_cols=57 Identities=25% Similarity=0.292 Sum_probs=27.5
Q ss_pred CccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeec
Q 042585 123 SIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRY 180 (286)
Q Consensus 123 ~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 180 (286)
+|++|.+++|.+....+ ...++++|++|+++++.++.-.- ..+..+|+|+.|+++++
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCC
Confidence 45666666655533222 23346666666666555321111 12344556666655543
No 30
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.84 E-value=0.00017 Score=67.02 Aligned_cols=124 Identities=19% Similarity=0.228 Sum_probs=77.4
Q ss_pred CCceEEEEEeccCCCcccCCCcchh-ccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVL-RSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ 173 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 173 (286)
++.-.|+|++.. -..+|..++ +...|-.|+|+++.++.++|-...+.+|++|.|+++.+....+++ +.+..+|+
T Consensus 126 Kn~iVLNLS~N~----IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~ 200 (1255)
T KOG0444|consen 126 KNSIVLNLSYNN----IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLS 200 (1255)
T ss_pred cCcEEEEcccCc----cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc-Cccchhhh
Confidence 566677777221 234555443 556777788888888776566667888888888888866666655 34455666
Q ss_pred eEEeeecccc-----ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585 174 HLEFVRYNNL-----VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 174 ~L~l~~c~~~-----~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
.|++++-.-. +.+..+.+|..++++.++...- -.-....++|+.|++++.
T Consensus 201 vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v--Pecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV--PECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred hhhcccccchhhcCCCchhhhhhhhhccccccCCCcc--hHHHhhhhhhheeccCcC
Confidence 6777653211 2222267777777776654431 133456677888887774
No 31
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.80 E-value=0.0025 Score=62.19 Aligned_cols=54 Identities=24% Similarity=0.265 Sum_probs=29.0
Q ss_pred hCCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceee
Q 042585 94 ERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY 156 (286)
Q Consensus 94 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~ 156 (286)
..+-..|+++... -..+|..+. ++|+.|.+.++.+..+ | ...++|++|+|+++.
T Consensus 200 ~~~~~~LdLs~~~----LtsLP~~l~--~~L~~L~L~~N~Lt~L-P--~lp~~Lk~LdLs~N~ 253 (788)
T PRK15387 200 NNGNAVLNVGESG----LTTLPDCLP--AHITTLVIPDNNLTSL-P--ALPPELRTLEVSGNQ 253 (788)
T ss_pred cCCCcEEEcCCCC----CCcCCcchh--cCCCEEEccCCcCCCC-C--CCCCCCcEEEecCCc
Confidence 3455667666211 124555443 3567777766665432 1 124667777776665
No 32
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.76 E-value=0.0012 Score=42.82 Aligned_cols=14 Identities=43% Similarity=0.441 Sum_probs=6.6
Q ss_pred hcCCCccEEecccc
Q 042585 212 SGLPLLEQLHISLC 225 (286)
Q Consensus 212 ~~~p~L~~L~l~~c 225 (286)
.++|+|++|++++|
T Consensus 46 ~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 46 SNLPNLRYLDLSNN 59 (61)
T ss_dssp TTSTTESEEEETSS
T ss_pred cCCCCCCEEeCcCC
Confidence 44445555554443
No 33
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.76 E-value=0.00015 Score=69.99 Aligned_cols=119 Identities=24% Similarity=0.240 Sum_probs=75.3
Q ss_pred CCccEEEEeceee-ccCCcCcccCCCccEEEcceee---eChHHHHHHHhcCCCcceEEeeecccc---ceeecccCCce
Q 042585 122 KSIKVLTLQNYKL-ESLGNDDVKLLSLRKLHLSDVY---ADDQVMNNLFAQSPLLQHLEFVRYNNL---VNVSSCKNLKH 194 (286)
Q Consensus 122 ~~L~~L~L~~~~~-~~~~~~~~~~~~L~~L~L~~~~---~~~~~l~~l~~~cp~Le~L~l~~c~~~---~~~~~~~~L~~ 194 (286)
+.|+.|.+.++.+ +..+|...++++||.|+|++++ +.+..+ ...+.||+|++++..-. ..+..++.|+.
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~----~kle~LeeL~LSGNkL~~Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL----RKLEELEELNLSGNKLTTLPDTVANLGRLHT 434 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHH----hchHHhHHHhcccchhhhhhHHHHhhhhhHH
Confidence 4556666666666 3344667778888888888886 333333 34677888888765322 22233777777
Q ss_pred EEecCcccChhhHHHHHhcCCCccEEecccccCccccccc----cccccEEEeecccC
Q 042585 195 LDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITIS----SLRLKKLIINTCES 248 (286)
Q Consensus 195 L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~----~p~L~~L~ls~c~~ 248 (286)
|....+.+.- + .-....|.|+.++++. -++..+.+- .|+|+.|++++...
T Consensus 435 L~ahsN~l~~--f-Pe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 435 LRAHSNQLLS--F-PELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HhhcCCceee--c-hhhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcc
Confidence 7776554321 1 2345788899999965 334333322 38999999999874
No 34
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=96.76 E-value=0.00058 Score=58.75 Aligned_cols=42 Identities=31% Similarity=0.410 Sum_probs=38.3
Q ss_pred ccCCCcccCCCCC----HHHHHHHHccCChhhHHHhhhhhhhhHhh
Q 042585 9 KKNHNVDRISALP----QPILQLIMSFLPFKQVVQICMVSKVWLQA 50 (286)
Q Consensus 9 ~~~~~~d~i~~LP----deil~~Ils~L~~~d~~~~~~vskrW~~l 50 (286)
+.|-..|.|+.|| |++...|||||...+++.|..|||+|+++
T Consensus 67 rpmLqrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~ 112 (499)
T KOG0281|consen 67 KPMLQRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV 112 (499)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence 4555789999999 99999999999999999999999999873
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.67 E-value=0.003 Score=56.85 Aligned_cols=132 Identities=17% Similarity=0.157 Sum_probs=74.8
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceee-ccCCcCcccCCCccEEEcceee-eChHHHHHHHhcCCCc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKL-ESLGNDDVKLLSLRKLHLSDVY-ADDQVMNNLFAQSPLL 172 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~L 172 (286)
.++++|+++.+. -..+|. --.+|++|.+++|.- ... +.. -.++|++|++++|. +. .--+.|
T Consensus 52 ~~l~~L~Is~c~----L~sLP~---LP~sLtsL~Lsnc~nLtsL-P~~-LP~nLe~L~Ls~Cs~L~--------sLP~sL 114 (426)
T PRK15386 52 RASGRLYIKDCD----IESLPV---LPNELTEITIENCNNLTTL-PGS-IPEGLEKLTVCHCPEIS--------GLPESV 114 (426)
T ss_pred cCCCEEEeCCCC----CcccCC---CCCCCcEEEccCCCCcccC-Cch-hhhhhhheEccCccccc--------cccccc
Confidence 677788887221 223331 124688888888644 221 211 13578999998885 43 123568
Q ss_pred ceEEeeeccccceeec-ccCCceEEecCcccChhhHHHHH-hcCCCccEEecccccCccccccccccccEEEeecc
Q 042585 173 QHLEFVRYNNLVNVSS-CKNLKHLDLCDGSYTDEWLNSQI-SGLPLLEQLHISLCNNIESITISSLRLKKLIINTC 246 (286)
Q Consensus 173 e~L~l~~c~~~~~~~~-~~~L~~L~l~~~~~~~~~l~~~~-~~~p~L~~L~l~~c~~~~~~~i~~p~L~~L~ls~c 246 (286)
+.|++. +.....+.. .++|+.|.+.+...... ..+. .-.++|++|.+.+|.....-..--..|+.|.++.+
T Consensus 115 e~L~L~-~n~~~~L~~LPssLk~L~I~~~n~~~~--~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 115 RSLEIK-GSATDSIKNVPNGLTSLSINSYNPENQ--ARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHIE 187 (426)
T ss_pred ceEEeC-CCCCcccccCcchHhheeccccccccc--cccccccCCcccEEEecCCCcccCcccccccCcEEEeccc
Confidence 888876 333334444 67888888864321100 0111 23368999999998755311111147888888764
No 36
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.00069 Score=54.41 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=48.5
Q ss_pred ccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccce-----eec-ccCCceEEecCc-ccChhhHHHHHhcCCCccE
Q 042585 147 LRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVN-----VSS-CKNLKHLDLCDG-SYTDEWLNSQISGLPLLEQ 219 (286)
Q Consensus 147 L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~-----~~~-~~~L~~L~l~~~-~~~~~~l~~~~~~~p~L~~ 219 (286)
++.++-+++.+...+++. +..++.++.|.+.+|....+ ++. .|+|+.|.|++| .+++.++ ......++|+.
T Consensus 103 IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-~~L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-ACLLKLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-HHHHHhhhhHH
Confidence 556666666677777877 45678888888877755322 111 566666666655 3555554 44455666666
Q ss_pred EecccccCc
Q 042585 220 LHISLCNNI 228 (286)
Q Consensus 220 L~l~~c~~~ 228 (286)
|.+.+-+.+
T Consensus 181 L~l~~l~~v 189 (221)
T KOG3864|consen 181 LHLYDLPYV 189 (221)
T ss_pred HHhcCchhh
Confidence 666654433
No 37
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.41 E-value=0.0027 Score=33.46 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=20.8
Q ss_pred CCCccEEEcceee-eChHHHHHHHh
Q 042585 144 LLSLRKLHLSDVY-ADDQVMNNLFA 167 (286)
Q Consensus 144 ~~~L~~L~L~~~~-~~~~~l~~l~~ 167 (286)
||+|++|+|++|. ++|.++..+..
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 6889999999999 99999988764
No 38
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.41 E-value=0.0016 Score=54.24 Aligned_cols=105 Identities=28% Similarity=0.300 Sum_probs=71.6
Q ss_pred ccCCccEEEEeceeeccCCcCcccCCCccEEEcceee-eChHHHHHHHhcCCCcceEEeeecccc--ceeec---ccCCc
Q 042585 120 RSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY-ADDQVMNNLFAQSPLLQHLEFVRYNNL--VNVSS---CKNLK 193 (286)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~---~~~L~ 193 (286)
....|+.|++.++.+..+ ...-.+|+||+|.++.+. -...++..++..||+|..|++++.... ..+.. .++|+
T Consensus 41 ~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 455667777777666332 233457899999999885 333457777888999999999865432 22222 77888
Q ss_pred eEEecCcccCh--hhHHHHHhcCCCccEEecccc
Q 042585 194 HLDLCDGSYTD--EWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 194 ~L~l~~~~~~~--~~l~~~~~~~p~L~~L~l~~c 225 (286)
.|.+.+|..+. +.=..+..-+|+|++|+=.++
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 88888887553 223466678899999886654
No 39
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.30 E-value=0.0082 Score=58.64 Aligned_cols=52 Identities=21% Similarity=0.274 Sum_probs=31.8
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceee
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY 156 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~ 156 (286)
.+++.|.+... .-..+|.. .++|++|+++++.+... | ...++|++|+|.++.
T Consensus 222 ~~L~~L~L~~N----~Lt~LP~l---p~~Lk~LdLs~N~LtsL-P--~lp~sL~~L~Ls~N~ 273 (788)
T PRK15387 222 AHITTLVIPDN----NLTSLPAL---PPELRTLEVSGNQLTSL-P--VLPPGLLELSIFSNP 273 (788)
T ss_pred cCCCEEEccCC----cCCCCCCC---CCCCcEEEecCCccCcc-c--CcccccceeeccCCc
Confidence 35677777611 12234432 47889999988877542 2 124677888777765
No 40
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=96.20 E-value=0.0062 Score=32.08 Aligned_cols=25 Identities=36% Similarity=0.700 Sum_probs=21.9
Q ss_pred CccEEEcceee-eChHHHHHHHhcCC
Q 042585 146 SLRKLHLSDVY-ADDQVMNNLFAQSP 170 (286)
Q Consensus 146 ~L~~L~L~~~~-~~~~~l~~l~~~cp 170 (286)
+||+|+|..+. .++..++.++++||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 58999999999 56668999999998
No 41
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.18 E-value=0.004 Score=61.81 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=37.9
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceee
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY 156 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~ 156 (286)
+.++.|+++... ....+|..+...-+|++|+|+++.+..++.....+..|.+|++..+.
T Consensus 571 ~~LrVLDLs~~~---~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 571 PLLRVLDLSGNS---SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTG 629 (889)
T ss_pred cceEEEECCCCC---ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccc
Confidence 567777777322 45678888888888888888887665443444445555556555544
No 42
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.17 E-value=0.00021 Score=56.01 Aligned_cols=87 Identities=22% Similarity=0.217 Sum_probs=66.8
Q ss_pred cchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc---ceeecccCC
Q 042585 116 QMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL---VNVSSCKNL 192 (286)
Q Consensus 116 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~---~~~~~~~~L 192 (286)
..++..++++.|.|+.+.+....|..+.+.+|+.|+++++++.+ +..-+++.|.|+.|+++...-. ..|+.+|-|
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence 35677889999999998886665777889999999999998543 3334577999999999744322 567779999
Q ss_pred ceEEecCcccCh
Q 042585 193 KHLDLCDGSYTD 204 (286)
Q Consensus 193 ~~L~l~~~~~~~ 204 (286)
+.|+++.+....
T Consensus 105 evldltynnl~e 116 (264)
T KOG0617|consen 105 EVLDLTYNNLNE 116 (264)
T ss_pred hhhhcccccccc
Confidence 999998665443
No 43
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.17 E-value=0.0055 Score=59.84 Aligned_cols=32 Identities=25% Similarity=0.245 Sum_probs=15.9
Q ss_pred CccEEEEeceeeccCCcCcccCCCccEEEcceee
Q 042585 123 SIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY 156 (286)
Q Consensus 123 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~ 156 (286)
+|+.|+++++.+..+ |. .-+++|+.|+|+++.
T Consensus 263 ~L~~L~Ls~N~L~~L-P~-~l~~sL~~L~Ls~N~ 294 (754)
T PRK15370 263 ALQSLDLFHNKISCL-PE-NLPEELRYLSVYDNS 294 (754)
T ss_pred CCCEEECcCCccCcc-cc-ccCCCCcEEECCCCc
Confidence 555566655554321 11 112456666666655
No 44
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.14 E-value=0.0068 Score=59.20 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=18.0
Q ss_pred CCccEEecccccCccccccc-cccccEEEeeccc
Q 042585 215 PLLEQLHISLCNNIESITIS-SLRLKKLIINTCE 247 (286)
Q Consensus 215 p~L~~L~l~~c~~~~~~~i~-~p~L~~L~ls~c~ 247 (286)
++|++|++.+|. ++.+.-. .++|+.|++++|.
T Consensus 325 ~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N~ 357 (754)
T PRK15370 325 PGLKTLEAGENA-LTSLPASLPPELQVLDVSKNQ 357 (754)
T ss_pred ccceeccccCCc-cccCChhhcCcccEEECCCCC
Confidence 456666666653 2222111 2578888888774
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.08 E-value=0.004 Score=37.47 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=17.0
Q ss_pred CccEEEEeceeeccCCcCcccCCCccEEEcceeee
Q 042585 123 SIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYA 157 (286)
Q Consensus 123 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 157 (286)
+|++|+++++.+..+.+....+++|+.|+++++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 45556665555533322244556666666655553
No 46
>PLN03150 hypothetical protein; Provisional
Probab=95.91 E-value=0.012 Score=56.53 Aligned_cols=78 Identities=23% Similarity=0.228 Sum_probs=33.8
Q ss_pred ccEEEEeceeecc-CCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----ceeecccCCceEEec
Q 042585 124 IKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVSSCKNLKHLDLC 198 (286)
Q Consensus 124 L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~~~~~L~~L~l~ 198 (286)
++.|+|+++.+.. .......+++|+.|+|+++.+... +...+..+++|+.|+++++... ..+..+++|+.|++.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4445555544422 112233455555555555543211 1112344555555555544322 112225555555555
Q ss_pred Cccc
Q 042585 199 DGSY 202 (286)
Q Consensus 199 ~~~~ 202 (286)
++.+
T Consensus 499 ~N~l 502 (623)
T PLN03150 499 GNSL 502 (623)
T ss_pred CCcc
Confidence 5443
No 47
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.0017 Score=54.90 Aligned_cols=78 Identities=23% Similarity=0.243 Sum_probs=43.0
Q ss_pred CCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc--ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEe
Q 042585 144 LLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL--VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLH 221 (286)
Q Consensus 144 ~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~ 221 (286)
+.+.++|++++|.++|-. |....|.||.|.|+-.... ..+..|.+|+.|.+..+.+.+=.=.....++|+|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHH---HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 445566777777665543 2345667777777633221 22223777777777644443311114456777777777
Q ss_pred ccc
Q 042585 222 ISL 224 (286)
Q Consensus 222 l~~ 224 (286)
+..
T Consensus 95 L~E 97 (388)
T KOG2123|consen 95 LDE 97 (388)
T ss_pred hcc
Confidence 766
No 48
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.74 E-value=0.0038 Score=53.36 Aligned_cols=121 Identities=22% Similarity=0.221 Sum_probs=57.6
Q ss_pred CCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccccee--ec-ccCCceEEec
Q 042585 122 KSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVNV--SS-CKNLKHLDLC 198 (286)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~--~~-~~~L~~L~l~ 198 (286)
+.|+.++|+++.+..+.....-.|.++.|+++.+.+.. +.. ++..++|..|++++..-.... .- .-+.|.|+++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~--v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT--VQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceee--ehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 44555666665542221222335666666666655211 111 233566666666643211111 11 4566666666
Q ss_pred CcccChhhHHHHHhcCCCccEEeccccc--Ccccc-ccc-cccccEEEeecccC
Q 042585 199 DGSYTDEWLNSQISGLPLLEQLHISLCN--NIESI-TIS-SLRLKKLIINTCES 248 (286)
Q Consensus 199 ~~~~~~~~l~~~~~~~p~L~~L~l~~c~--~~~~~-~i~-~p~L~~L~ls~c~~ 248 (286)
.+.+.+ + +-....-+|++|++++.. .+..+ +|. .|.|+.+.+.+.+-
T Consensus 361 ~N~iE~--L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 361 QNKIET--L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhHhh--h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 543322 1 222344566777776642 22222 233 37777777766543
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.73 E-value=0.0051 Score=52.52 Aligned_cols=102 Identities=23% Similarity=0.308 Sum_probs=70.7
Q ss_pred CccEEEEeceeecc---CCcCcccCCCccEEEcceeeeChH-HHHHHHhcCCCcceEEeeecccc-ceeec----ccCCc
Q 042585 123 SIKVLTLQNYKLES---LGNDDVKLLSLRKLHLSDVYADDQ-VMNNLFAQSPLLQHLEFVRYNNL-VNVSS----CKNLK 193 (286)
Q Consensus 123 ~L~~L~L~~~~~~~---~~~~~~~~~~L~~L~L~~~~~~~~-~l~~l~~~cp~Le~L~l~~c~~~-~~~~~----~~~L~ 193 (286)
-++-|.+-+|.++. +......+..++.|+|.++.++++ .+..|....|.|+.|+++ |... ..+.. ..+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls-~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLS-CNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeecc-CCcCCCccccCcccccceE
Confidence 44556666777733 112233588999999999996664 588899999999999998 4443 33333 45889
Q ss_pred eEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585 194 HLDLCDGSYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 194 ~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
.|.+.+....=..+.....+.|+++.|+++..
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 99888765443334466777888888877764
No 50
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=95.71 E-value=0.00023 Score=66.21 Aligned_cols=139 Identities=20% Similarity=0.153 Sum_probs=75.4
Q ss_pred cccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc--c-ee
Q 042585 110 TWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL--V-NV 186 (286)
Q Consensus 110 ~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~--~-~~ 186 (286)
+-..+|..+-...||..++++.+.+...+......++|+.|+|+++.++.-.+. .....+||.|+++...-. . .+
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~--~~~W~~lEtLNlSrNQLt~LP~av 287 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMT--EGEWENLETLNLSRNQLTVLPDAV 287 (1255)
T ss_pred hhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeecc--HHHHhhhhhhccccchhccchHHH
Confidence 445566666666677777776666644333445577777777777764432211 122455666766643211 1 11
Q ss_pred ecccCCceEEecCcccChh----h------HH-------------HHHhcCCCccEEecccccCcc-ccccc-cccccEE
Q 042585 187 SSCKNLKHLDLCDGSYTDE----W------LN-------------SQISGLPLLEQLHISLCNNIE-SITIS-SLRLKKL 241 (286)
Q Consensus 187 ~~~~~L~~L~l~~~~~~~~----~------l~-------------~~~~~~p~L~~L~l~~c~~~~-~~~i~-~p~L~~L 241 (286)
..++.|+.|...++..+=+ + +. .-...|++|+.|.+....-++ .-.|+ .|.|+.|
T Consensus 288 cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vL 367 (1255)
T KOG0444|consen 288 CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVL 367 (1255)
T ss_pred hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCccee
Confidence 1155555555543322110 0 00 113467888888887654433 12233 4789999
Q ss_pred EeecccCCc
Q 042585 242 IINTCESNT 250 (286)
Q Consensus 242 ~ls~c~~~~ 250 (286)
++...+++.
T Consensus 368 DlreNpnLV 376 (1255)
T KOG0444|consen 368 DLRENPNLV 376 (1255)
T ss_pred eccCCcCcc
Confidence 999887764
No 51
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=95.57 E-value=0.01 Score=52.67 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=34.3
Q ss_pred ccCCCCCHHHHHHHHccCC-hhhHHHhhhhhhhhHhhhcc
Q 042585 15 DRISALPQPILQLIMSFLP-FKQVVQICMVSKVWLQAWHT 53 (286)
Q Consensus 15 d~i~~LPdeil~~Ils~L~-~~d~~~~~~vskrW~~lw~~ 53 (286)
..+++||+|+|..|..+|+ .-|++|.+.|||.||.....
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 3588999999999999997 57999999999999986543
No 52
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=95.31 E-value=0.0092 Score=51.09 Aligned_cols=39 Identities=23% Similarity=0.439 Sum_probs=32.3
Q ss_pred CcccCCCCCHHHHHHHHcc-----CChhhHHHhhhhhhhhHhhh
Q 042585 13 NVDRISALPQPILQLIMSF-----LPFKQVVQICMVSKVWLQAW 51 (286)
Q Consensus 13 ~~d~i~~LPdeil~~Ils~-----L~~~d~~~~~~vskrW~~lw 51 (286)
..+.|+.||||+|..||.. ++.+++.+++.|||.|....
T Consensus 103 ~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~ 146 (366)
T KOG2997|consen 103 ELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCA 146 (366)
T ss_pred hhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHH
Confidence 3455789999999999974 45699999999999998743
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.0048 Score=52.70 Aligned_cols=130 Identities=16% Similarity=0.155 Sum_probs=86.5
Q ss_pred CCceEEEEE-eccCCCcccCCCcchhccCCccEEEEeceeecc-CCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585 95 RNVEELEVE-HLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL 172 (286)
Q Consensus 95 ~~l~~L~l~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 172 (286)
..++++++. +.- -.+.++-+.+.+.+.|+.|+|+.+.+.. ....+....+|++|.|-+..++-..+.......|.+
T Consensus 71 ~~v~elDL~~N~i--SdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 71 TDVKELDLTGNLI--SDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhcccchh--ccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 356778887 322 1455555666788999999999877732 111123466899999999888878888888999999
Q ss_pred ceEEeeecc--cc---ceeec--ccCCceEEecCcccCh-hhHHHHHhcCCCccEEeccccc
Q 042585 173 QHLEFVRYN--NL---VNVSS--CKNLKHLDLCDGSYTD-EWLNSQISGLPLLEQLHISLCN 226 (286)
Q Consensus 173 e~L~l~~c~--~~---~~~~~--~~~L~~L~l~~~~~~~-~~l~~~~~~~p~L~~L~l~~c~ 226 (286)
.+|+++... .. .+... .+.++.|+...|.+.- .....+....|++..+.+..|+
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence 999887531 11 11111 6677777777764321 1123566778888888877764
No 54
>PLN03150 hypothetical protein; Provisional
Probab=95.19 E-value=0.036 Score=53.37 Aligned_cols=70 Identities=14% Similarity=0.162 Sum_probs=53.9
Q ss_pred ccCCCcchhccCCccEEEEeceeecc-CCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecc
Q 042585 111 WNSLPQMVLRSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYN 181 (286)
Q Consensus 111 ~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 181 (286)
...+|..+..+++|+.|+|+++.+.. .......+++|+.|+|+++.++.. +...+..+++|+.|+++++.
T Consensus 431 ~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 431 RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECcCCc
Confidence 34677788889999999999998853 323456799999999999985432 22335679999999999764
No 55
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.16 E-value=0.0033 Score=52.45 Aligned_cols=99 Identities=21% Similarity=0.210 Sum_probs=48.2
Q ss_pred cCCCccEEEcceee-eChHHHHHHHhcCCCcceEEeeec--cccceeec----ccCCceEEecCcccCh-hhHHHHHhcC
Q 042585 143 KLLSLRKLHLSDVY-ADDQVMNNLFAQSPLLQHLEFVRY--NNLVNVSS----CKNLKHLDLCDGSYTD-EWLNSQISGL 214 (286)
Q Consensus 143 ~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c--~~~~~~~~----~~~L~~L~l~~~~~~~-~~l~~~~~~~ 214 (286)
.+..|+.|++.++. .+-..+ -..|+|+.|.++.. +....+.. +|+|++|+++++.+.+ +.+ .-....
T Consensus 41 ~~~~le~ls~~n~gltt~~~~----P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l 115 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNF----PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKEL 115 (260)
T ss_pred cccchhhhhhhccceeecccC----CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhh
Confidence 45666666666665 222111 22456677777643 22222211 6777777777665443 111 112344
Q ss_pred CCccEEecccccCcc--c----cccccccccEEEeecc
Q 042585 215 PLLEQLHISLCNNIE--S----ITISSLRLKKLIINTC 246 (286)
Q Consensus 215 p~L~~L~l~~c~~~~--~----~~i~~p~L~~L~ls~c 246 (286)
++|..|++..|+... + +..-.|+|+.|+--.+
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 556666666664332 1 1122466666655444
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.74 E-value=0.04 Score=33.05 Aligned_cols=34 Identities=47% Similarity=0.656 Sum_probs=21.5
Q ss_pred cCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585 190 KNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 190 ~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
++|++|+++++.+++ +......+|+|+.|+++++
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence 467777777776664 3233567777777777776
No 57
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=94.36 E-value=0.02 Score=30.02 Aligned_cols=19 Identities=37% Similarity=0.537 Sum_probs=9.7
Q ss_pred CCCccEEecccccCccccc
Q 042585 214 LPLLEQLHISLCNNIESIT 232 (286)
Q Consensus 214 ~p~L~~L~l~~c~~~~~~~ 232 (286)
||+|++|++++|.++++.+
T Consensus 1 c~~L~~L~l~~C~~itD~g 19 (26)
T smart00367 1 CPNLRELDLSGCTNITDEG 19 (26)
T ss_pred CCCCCEeCCCCCCCcCHHH
Confidence 4455555555555554443
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.14 E-value=0.025 Score=47.80 Aligned_cols=34 Identities=21% Similarity=0.133 Sum_probs=14.4
Q ss_pred CCceEEecCcccChhhHHHH----HhcCCCccEEeccc
Q 042585 191 NLKHLDLCDGSYTDEWLNSQ----ISGLPLLEQLHISL 224 (286)
Q Consensus 191 ~L~~L~l~~~~~~~~~l~~~----~~~~p~L~~L~l~~ 224 (286)
+||.+.+..+.+...++..+ ...|.+|+.|++++
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqD 223 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQD 223 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccc
Confidence 44555554443333332222 13444555555544
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.92 E-value=0.083 Score=42.77 Aligned_cols=57 Identities=21% Similarity=0.293 Sum_probs=24.5
Q ss_pred cCCccEEEEeceeeccCCc-CcccCCCccEEEcceee-eChHHHHHHHhcCCCcceEEee
Q 042585 121 SKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVY-ADDQVMNNLFAQSPLLQHLEFV 178 (286)
Q Consensus 121 ~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~ 178 (286)
.++|..|.|.++.+....+ ....+|+|++|.|.++. ..-.++.- +.+||.|+.|.+.
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll 121 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLL 121 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeec
Confidence 3455555555544411111 12235555555555554 22222322 2345555555554
No 60
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=93.34 E-value=0.0099 Score=56.62 Aligned_cols=133 Identities=20% Similarity=0.299 Sum_probs=75.5
Q ss_pred CcchhccCCccEEEEeceeeccCCcCccc-CCCccEEEcceeeeChHHHHHHHhcC-----CCcceEEee--e--cccc-
Q 042585 115 PQMVLRSKSIKVLTLQNYKLESLGNDDVK-LLSLRKLHLSDVYADDQVMNNLFAQS-----PLLQHLEFV--R--YNNL- 183 (286)
Q Consensus 115 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~l~~l~~~c-----p~Le~L~l~--~--c~~~- 183 (286)
|-.++....|++|.|.+|.+... -+... -.+|++|-- +-+-.+++.++++| ..+....|. . |...
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC---~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA-KGLQELRHQLEKLIC---HNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh-hhhHHHHHhhhhhhh---hccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 77788899999999999887321 11111 233555432 22334566666544 223332221 1 1111
Q ss_pred ---ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccc--cCccccccccccccEEEeecccCCccccc
Q 042585 184 ---VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC--NNIESITISSLRLKKLIINTCESNTIFSF 254 (286)
Q Consensus 184 ---~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c--~~~~~~~i~~p~L~~L~ls~c~~~~~~~~ 254 (286)
..+.-.|.|++|+++++.+++- .....||+|++|+++.. +.+..++..+-.|..|.+++..--+..++
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gi 250 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGI 250 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhH
Confidence 1122278899999998887764 46788999999998873 33444443333466666666544443333
No 61
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.31 E-value=0.071 Score=27.20 Aligned_cols=23 Identities=26% Similarity=0.189 Sum_probs=15.9
Q ss_pred CCCccEEEcceeeeChHHHHHHH
Q 042585 144 LLSLRKLHLSDVYADDQVMNNLF 166 (286)
Q Consensus 144 ~~~L~~L~L~~~~~~~~~l~~l~ 166 (286)
+++|++|+|.++.+++.++..+.
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 46788888888888888877754
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.00 E-value=0.064 Score=43.40 Aligned_cols=101 Identities=20% Similarity=0.208 Sum_probs=57.8
Q ss_pred CccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc-----ceeecccCCceEEe
Q 042585 123 SIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL-----VNVSSCKNLKHLDL 197 (286)
Q Consensus 123 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~-----~~~~~~~~L~~L~l 197 (286)
....++|+.+.+... ....+++.|.+|.|.+++++.-+ ..+....|+|..|.+.+.... ..++.||+|++|++
T Consensus 43 ~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc-ccCCCccccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 345566666554111 33446778888888888743211 123345778888888754321 22334788888888
Q ss_pred cCcccChh-hHH-HHHhcCCCccEEecccc
Q 042585 198 CDGSYTDE-WLN-SQISGLPLLEQLHISLC 225 (286)
Q Consensus 198 ~~~~~~~~-~l~-~~~~~~p~L~~L~l~~c 225 (286)
-++.++.. ..+ .+....|+|+.|++.+-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 77665542 111 22345677777777663
No 63
>PF13013 F-box-like_2: F-box-like domain
Probab=92.35 E-value=0.13 Score=37.50 Aligned_cols=30 Identities=20% Similarity=0.349 Sum_probs=27.1
Q ss_pred cCCCCCHHHHHHHHccCChhhHHHhhhhhh
Q 042585 16 RISALPQPILQLIMSFLPFKQVVQICMVSK 45 (286)
Q Consensus 16 ~i~~LPdeil~~Ils~L~~~d~~~~~~vsk 45 (286)
.+.+||+|++..||.+....++......|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 478999999999999999999988887776
No 64
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=92.15 E-value=0.055 Score=46.50 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=31.7
Q ss_pred CCCcceEEeeecccc---ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585 169 SPLLQHLEFVRYNNL---VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 169 cp~Le~L~l~~c~~~---~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
...|++|+++..... ..+...|.++.|+++.+.+..- .. ....++|..|++++.
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~n-La~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QN-LAELPQLQLLDLSGN 339 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hh-hhhcccceEeecccc
Confidence 344666666543211 2222268888888887665432 12 567788888888774
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.35 E-value=0.018 Score=48.84 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=32.5
Q ss_pred ccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeCh-HHHHHHHhcCCCcceEEee
Q 042585 120 RSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADD-QVMNNLFAQSPLLQHLEFV 178 (286)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~Le~L~l~ 178 (286)
+.+.|++|.|+-+.+..+ .....|.+|+.|.|..+.+.+ +.+.. +.+.|+|+.|=|.
T Consensus 39 kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~ 96 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLD 96 (388)
T ss_pred hcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhc
Confidence 456666666666655432 334556777777776666333 23333 4566666666554
No 66
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=91.27 E-value=0.095 Score=49.34 Aligned_cols=40 Identities=25% Similarity=0.373 Sum_probs=37.0
Q ss_pred CCCcccCCCCCHHHHHHHHccCChhhHHHhhhhhhhhHhh
Q 042585 11 NHNVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQA 50 (286)
Q Consensus 11 ~~~~d~i~~LPdeil~~Ils~L~~~d~~~~~~vskrW~~l 50 (286)
....|.++.||-|+..+||++|+.++++.+++||+.|+.+
T Consensus 102 ~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~ 141 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL 141 (537)
T ss_pred ccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence 3468899999999999999999999999999999999875
No 67
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=90.76 E-value=0.36 Score=48.35 Aligned_cols=121 Identities=26% Similarity=0.341 Sum_probs=67.7
Q ss_pred CCccEEEEeceeeccCCcCcccCCCccEEEcceeee-ChHHHHHHHhcCCCcceEEeeeccccceee----cccCCceEE
Q 042585 122 KSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYA-DDQVMNNLFAQSPLLQHLEFVRYNNLVNVS----SCKNLKHLD 196 (286)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~----~~~~L~~L~ 196 (286)
.....+.+.+..+... +....+|.|++|-+.++.- -...-..++...|.|+.|++++|.....+. .+-+||+|+
T Consensus 523 ~~~rr~s~~~~~~~~~-~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHI-AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccchhhc-cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 3445555544433111 3445577888888877641 111122335568889999998876553332 277888888
Q ss_pred ecCcccChhhHHHHHhcCCCccEEecccccCcccc-ccc--cccccEEEeec
Q 042585 197 LCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESI-TIS--SLRLKKLIINT 245 (286)
Q Consensus 197 l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~-~i~--~p~L~~L~ls~ 245 (286)
++++.+.. +..-.....+|.+|++........+ ++. .++|+.|.+..
T Consensus 602 L~~t~I~~--LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 602 LSDTGISH--LPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred ccCCCccc--cchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 88776552 2122344456777776665443333 222 25666666543
No 68
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=90.71 E-value=0.11 Score=46.82 Aligned_cols=79 Identities=25% Similarity=0.342 Sum_probs=43.9
Q ss_pred CceEEEEEeccCCCcccCCCcchhccC-CccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585 96 NVEELEVEHLRRLDTWNSLPQMVLRSK-SIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH 174 (286)
Q Consensus 96 ~l~~L~l~~~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 174 (286)
.+..+.+.+ .....++......+ +|+.|++++..+.........+++|+.|.+.++.+++-. ......++|+.
T Consensus 117 ~l~~L~l~~----n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~--~~~~~~~~L~~ 190 (394)
T COG4886 117 NLTSLDLDN----NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLP--KLLSNLSNLNN 190 (394)
T ss_pred ceeEEecCC----cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhh--hhhhhhhhhhh
Confidence 345555541 12345555555553 777777777766442224456777777777777643321 11124666677
Q ss_pred EEeeec
Q 042585 175 LEFVRY 180 (286)
Q Consensus 175 L~l~~c 180 (286)
|++++.
T Consensus 191 L~ls~N 196 (394)
T COG4886 191 LDLSGN 196 (394)
T ss_pred eeccCC
Confidence 766654
No 69
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=88.95 E-value=0.16 Score=46.42 Aligned_cols=102 Identities=27% Similarity=0.238 Sum_probs=53.0
Q ss_pred hhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeee-ChHHHHHHHhcCCCcceEEeeecccc--ceeecccCCce
Q 042585 118 VLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYA-DDQVMNNLFAQSPLLQHLEFVRYNNL--VNVSSCKNLKH 194 (286)
Q Consensus 118 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~~~~L~~ 194 (286)
+..+++|+.|.+..+.+........++++|++|+|+++.+ +-.++.. ++.|+.|++.++... ..+..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~----l~~L~~L~l~~N~i~~~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLST----LTLLKELNLSGNLISDISGLESLKSLKL 166 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhh----ccchhhheeccCcchhccCCccchhhhc
Confidence 3345666666666666533211144567777777776663 2233332 344677776654332 22333566666
Q ss_pred EEecCcccChhhHHHH-HhcCCCccEEecccc
Q 042585 195 LDLCDGSYTDEWLNSQ-ISGLPLLEQLHISLC 225 (286)
Q Consensus 195 L~l~~~~~~~~~l~~~-~~~~p~L~~L~l~~c 225 (286)
+++.++.+..-. .. ...+++|+.+.+.+.
T Consensus 167 l~l~~n~i~~ie--~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 167 LDLSYNRIVDIE--NDELSELISLEELDLGGN 196 (414)
T ss_pred ccCCcchhhhhh--hhhhhhccchHHHhccCC
Confidence 666655444311 11 355666666666553
No 70
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.82 E-value=0.35 Score=43.34 Aligned_cols=17 Identities=12% Similarity=0.081 Sum_probs=9.1
Q ss_pred HHHHHHHhCCceEEEEE
Q 042585 87 RCISYAIERNVEELEVE 103 (286)
Q Consensus 87 ~~~~~~~~~~l~~L~l~ 103 (286)
.....+-...+..++++
T Consensus 380 EVfea~~~~~Vt~Vnfs 396 (565)
T KOG0472|consen 380 EVFEAAKSEIVTSVNFS 396 (565)
T ss_pred HHHHHhhhcceEEEecc
Confidence 33334444566666666
No 71
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=87.04 E-value=0.093 Score=47.91 Aligned_cols=123 Identities=24% Similarity=0.234 Sum_probs=75.5
Q ss_pred ccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc--ceeecccCCceEEe
Q 042585 120 RSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL--VNVSSCKNLKHLDL 197 (286)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~~~~L~~L~l 197 (286)
.+..++.+.+....+.........+.+|+.|++.+..+.. +..+...+++|+.|++++.... ..+..++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhh--cccchhhhhcchheeccccccccccchhhccchhhhee
Confidence 4556666666655553211335568999999998887322 2222567999999999865432 33333777999999
Q ss_pred cCcccChhhHHHHHhcCCCccEEecccccCccccc---cccccccEEEeeccc
Q 042585 198 CDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT---ISSLRLKKLIINTCE 247 (286)
Q Consensus 198 ~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i~~p~L~~L~ls~c~ 247 (286)
.++.+.+- .-....++|+.++++++.....-. ...++++.+.+.+..
T Consensus 148 ~~N~i~~~---~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 148 SGNLISDI---SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred ccCcchhc---cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 98876642 112338888888888864332222 223455555555543
No 72
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=85.79 E-value=0.044 Score=52.42 Aligned_cols=10 Identities=50% Similarity=0.690 Sum_probs=5.3
Q ss_pred HHHHHHccCC
Q 042585 24 ILQLIMSFLP 33 (286)
Q Consensus 24 il~~Ils~L~ 33 (286)
-|..||.+|+
T Consensus 75 qLq~i~d~lq 84 (1096)
T KOG1859|consen 75 QLQRILDFLQ 84 (1096)
T ss_pred HHHHHHHHHh
Confidence 3455555555
No 73
>PRK15386 type III secretion protein GogB; Provisional
Probab=85.71 E-value=0.81 Score=41.53 Aligned_cols=71 Identities=14% Similarity=0.177 Sum_probs=48.6
Q ss_pred HhcCCCcceEEeeeccccceeec-ccCCceEEecCcccChhhHHHHH-hcCCCccEEecccccCccccccccccccEEEe
Q 042585 166 FAQSPLLQHLEFVRYNNLVNVSS-CKNLKHLDLCDGSYTDEWLNSQI-SGLPLLEQLHISLCNNIESITISSLRLKKLII 243 (286)
Q Consensus 166 ~~~cp~Le~L~l~~c~~~~~~~~-~~~L~~L~l~~~~~~~~~l~~~~-~~~p~L~~L~l~~c~~~~~~~i~~p~L~~L~l 243 (286)
+..|++++.|++++| ....+.. .++|++|++.+|..-. .+. .-.++|++|.+.+|..+..+ -+.|+.|++
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLt----sLP~~LP~nLe~L~Ls~Cs~L~sL---P~sLe~L~L 119 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPVLPNELTEITIENCNNLT----TLPGSIPEGLEKLTVCHCPEISGL---PESVRSLEI 119 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcc----cCCchhhhhhhheEccCccccccc---ccccceEEe
Confidence 445899999999988 4444445 5689999999864211 111 12468999999999766543 235777776
Q ss_pred e
Q 042585 244 N 244 (286)
Q Consensus 244 s 244 (286)
+
T Consensus 120 ~ 120 (426)
T PRK15386 120 K 120 (426)
T ss_pred C
Confidence 5
No 74
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=85.58 E-value=1.6 Score=37.33 Aligned_cols=109 Identities=18% Similarity=0.198 Sum_probs=67.7
Q ss_pred hccCCccEEEEeceeecc-----CCcCcccCCCccEEEcceee---eChHH------HHHHHhcCCCcceEEeeecccc-
Q 042585 119 LRSKSIKVLTLQNYKLES-----LGNDDVKLLSLRKLHLSDVY---ADDQV------MNNLFAQSPLLQHLEFVRYNNL- 183 (286)
Q Consensus 119 ~~~~~L~~L~L~~~~~~~-----~~~~~~~~~~L~~L~L~~~~---~~~~~------l~~l~~~cp~Le~L~l~~c~~~- 183 (286)
.....++.++|+|+.+.. ......+-.+|+.-+++... ..|.. +-..+..||+|+..+++.....
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 346888999999988721 11122334556666666554 22222 2223457999999999975432
Q ss_pred ------ceeec-ccCCceEEecCcccChhh-------HH-----HHHhcCCCccEEecccccC
Q 042585 184 ------VNVSS-CKNLKHLDLCDGSYTDEW-------LN-----SQISGLPLLEQLHISLCNN 227 (286)
Q Consensus 184 ------~~~~~-~~~L~~L~l~~~~~~~~~-------l~-----~~~~~~p~L~~L~l~~c~~ 227 (286)
.++.. ...|++|.+.+|..+.-+ +. .=..+.|.|+.+.+...+.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 23333 789999999988655321 11 1135789999999887653
No 75
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=84.94 E-value=0.55 Score=42.36 Aligned_cols=84 Identities=21% Similarity=0.245 Sum_probs=52.3
Q ss_pred hhccCCccEEEEeceeeccCCcCcccC-CCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc--eee-cccCCc
Q 042585 118 VLRSKSIKVLTLQNYKLESLGNDDVKL-LSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV--NVS-SCKNLK 193 (286)
Q Consensus 118 ~~~~~~L~~L~L~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~--~~~-~~~~L~ 193 (286)
+...+.++.|.+.+..+....+..... ++|+.|++.+..+.+.. .-...+|+|+.|+++.+.... ... ..+.|+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~--~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP--SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhh--hhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence 334467888888876663332233334 38888888888743321 124568889999888775432 222 377888
Q ss_pred eEEecCcccC
Q 042585 194 HLDLCDGSYT 203 (286)
Q Consensus 194 ~L~l~~~~~~ 203 (286)
.|+++++.+.
T Consensus 190 ~L~ls~N~i~ 199 (394)
T COG4886 190 NLDLSGNKIS 199 (394)
T ss_pred heeccCCccc
Confidence 8888876554
No 76
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=83.39 E-value=1.2 Score=23.59 Aligned_cols=24 Identities=33% Similarity=0.295 Sum_probs=19.6
Q ss_pred CCccEEEcceeeeChHHHHHHHhc
Q 042585 145 LSLRKLHLSDVYADDQVMNNLFAQ 168 (286)
Q Consensus 145 ~~L~~L~L~~~~~~~~~l~~l~~~ 168 (286)
++|++|+|+++.+++.+...+...
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 578999999999999888776543
No 77
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=82.42 E-value=0.31 Score=43.51 Aligned_cols=10 Identities=30% Similarity=0.444 Sum_probs=6.1
Q ss_pred ccccEEEeec
Q 042585 236 LRLKKLIINT 245 (286)
Q Consensus 236 p~L~~L~ls~ 245 (286)
|+|++|++++
T Consensus 274 ~~L~~lnlsn 283 (498)
T KOG4237|consen 274 PNLRKLNLSN 283 (498)
T ss_pred ccceEeccCC
Confidence 5666666654
No 78
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.03 E-value=0.72 Score=41.44 Aligned_cols=106 Identities=19% Similarity=0.204 Sum_probs=60.9
Q ss_pred CcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeC--hHHHHHHHhcCCCcceEEeeecccc----ceeec
Q 042585 115 PQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYAD--DQVMNNLFAQSPLLQHLEFVRYNNL----VNVSS 188 (286)
Q Consensus 115 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~--~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~~ 188 (286)
|..+...++|..|+|+++.+...+...+..-.|++|+++.+++. .+.+.. -..||.+-.++.... ..+..
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~----lq~lEtllas~nqi~~vd~~~l~n 503 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYE----LQTLETLLASNNQIGSVDPSGLKN 503 (565)
T ss_pred hHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhh----HHHHHHHHhccccccccChHHhhh
Confidence 34556778888888888766443334455677888888887621 111111 111222222211110 11222
Q ss_pred ccCCceEEecCcccChhhHHHHHhcCCCccEEeccccc
Q 042585 189 CKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCN 226 (286)
Q Consensus 189 ~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~ 226 (286)
+.+|.+|++.++++.. +-.+..+|.+|++|++.|.+
T Consensus 504 m~nL~tLDL~nNdlq~--IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 504 MRNLTTLDLQNNDLQQ--IPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred hhhcceeccCCCchhh--CChhhccccceeEEEecCCc
Confidence 7788888888765432 22566788888888888854
No 79
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=81.85 E-value=1 Score=20.88 Aligned_cols=11 Identities=18% Similarity=0.308 Sum_probs=5.0
Q ss_pred cccEEEeeccc
Q 042585 237 RLKKLIINTCE 247 (286)
Q Consensus 237 ~L~~L~ls~c~ 247 (286)
+|+.|++++|+
T Consensus 2 ~L~~L~l~~n~ 12 (17)
T PF13504_consen 2 NLRTLDLSNNR 12 (17)
T ss_dssp T-SEEEETSS-
T ss_pred ccCEEECCCCC
Confidence 45555555554
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=80.00 E-value=1.7 Score=40.57 Aligned_cols=82 Identities=17% Similarity=0.194 Sum_probs=59.8
Q ss_pred CcccCCCccEEEcceee-eChHHHHHHHhcCCCcceEEeeecccc----ceeec--ccCCceEEecCcccCh------hh
Q 042585 140 DDVKLLSLRKLHLSDVY-ADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVSS--CKNLKHLDLCDGSYTD------EW 206 (286)
Q Consensus 140 ~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~~--~~~L~~L~l~~~~~~~------~~ 206 (286)
...++|.+..++|++++ -.-.++..+....|+|..|+|++.... ..+.. ..-|++|-+.++.+.. +.
T Consensus 213 ~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~y 292 (585)
T KOG3763|consen 213 IEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEY 292 (585)
T ss_pred hhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHH
Confidence 44568999999999999 556678888889999999999875222 12222 5678888888765443 34
Q ss_pred HHHHHhcCCCccEEe
Q 042585 207 LNSQISGLPLLEQLH 221 (286)
Q Consensus 207 l~~~~~~~p~L~~L~ 221 (286)
+..+....|+|..|+
T Consensus 293 v~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 293 VSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHhcchheeec
Confidence 556677889998887
No 81
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=79.03 E-value=2.3 Score=31.34 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=20.4
Q ss_pred ccCCccEEEEeceeeccCCcCcccCCCccEEEcceee--eChHHHHHHHhcCCCcceEEee
Q 042585 120 RSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY--ADDQVMNNLFAQSPLLQHLEFV 178 (286)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le~L~l~ 178 (286)
.|.+|+.+.+.............++++|+.+++.... +.+.. ...|+.|+.+.+.
T Consensus 10 ~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~~~~i~~~~----F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 10 NCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNNLTSIGDNA----FSNCKSLESITFP 66 (129)
T ss_dssp T-TT--EEEETST--EE-TTTTTT-TT-SEEEESSTTSCE-TTT----TTT-TT-EEEEET
T ss_pred CCCCCCEEEECCCeeEeChhhcccccccccccccccccccceee----eeccccccccccc
Confidence 4556666665431111111233445566666665422 33222 3446566666664
No 82
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=75.43 E-value=2.2 Score=30.20 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.8
Q ss_pred ccCCCCCHHHHHHHHccCChhhHHH
Q 042585 15 DRISALPQPILQLIMSFLPFKQVVQ 39 (286)
Q Consensus 15 d~i~~LPdeil~~Ils~L~~~d~~~ 39 (286)
..|..||.|+...|+++|+.+|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 6799999999999999999998754
No 83
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=72.23 E-value=1.5 Score=39.38 Aligned_cols=60 Identities=17% Similarity=0.167 Sum_probs=25.1
Q ss_pred ccCCccEEEEeceeeccCC-cCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeec
Q 042585 120 RSKSIKVLTLQNYKLESLG-NDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRY 180 (286)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c 180 (286)
..++|+.|+|+++.++... ..+.+...++.|.|..+.+..- -..++.+...|+.|++.+.
T Consensus 272 ~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v-~~~~f~~ls~L~tL~L~~N 332 (498)
T KOG4237|consen 272 KLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFV-SSGMFQGLSGLKTLSLYDN 332 (498)
T ss_pred hcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHH-HHHhhhccccceeeeecCC
Confidence 4455555555555442211 1222344455555544441110 0112334455555555543
No 84
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=69.67 E-value=0.86 Score=34.87 Aligned_cols=80 Identities=18% Similarity=0.120 Sum_probs=44.5
Q ss_pred CccEEEEeceeec-c--CCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc---ceeecccCCceEE
Q 042585 123 SIKVLTLQNYKLE-S--LGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL---VNVSSCKNLKHLD 196 (286)
Q Consensus 123 ~L~~L~L~~~~~~-~--~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~---~~~~~~~~L~~L~ 196 (286)
.+..++|++|.+- . .......-..|++.+|+++.+.+ .-+.+...+|-++.|++...... ..++..|.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 4455677777551 1 11222334556666776665221 11245556777888887754321 2244477888888
Q ss_pred ecCcccC
Q 042585 197 LCDGSYT 203 (286)
Q Consensus 197 l~~~~~~ 203 (286)
+.++.+.
T Consensus 107 l~~N~l~ 113 (177)
T KOG4579|consen 107 LRFNPLN 113 (177)
T ss_pred cccCccc
Confidence 8876654
No 85
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=68.20 E-value=0.96 Score=34.61 Aligned_cols=65 Identities=15% Similarity=0.226 Sum_probs=47.2
Q ss_pred CcchhccCCccEEEEeceeeccCCcC-cccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecc
Q 042585 115 PQMVLRSKSIKVLTLQNYKLESLGND-DVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYN 181 (286)
Q Consensus 115 ~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~ 181 (286)
+..+.....|+..+|+++.++.+.+. ...||.+++|+|.++.+.+--.+ ++..|.|+.|++....
T Consensus 46 vy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 46 VYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE--LAAMPALRSLNLRFNP 111 (177)
T ss_pred HHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH--HhhhHHhhhcccccCc
Confidence 34455667778888998888665333 34588999999999986654444 6678999999998643
No 86
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=66.98 E-value=4.4 Score=19.95 Aligned_cols=13 Identities=23% Similarity=0.404 Sum_probs=8.9
Q ss_pred CccEEEEeceeec
Q 042585 123 SIKVLTLQNYKLE 135 (286)
Q Consensus 123 ~L~~L~L~~~~~~ 135 (286)
+|++|+|++|.+.
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 4677777777664
No 87
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=43.61 E-value=22 Score=30.31 Aligned_cols=51 Identities=10% Similarity=0.189 Sum_probs=36.7
Q ss_pred CcccCCCCCHHHHHHHHccCC-hhhHHHhhhhhhhh------HhhhccCCceEeecCC
Q 042585 13 NVDRISALPQPILQLIMSFLP-FKQVVQICMVSKVW------LQAWHTFPDLEIDKVK 63 (286)
Q Consensus 13 ~~d~i~~LPdeil~~Ils~L~-~~d~~~~~~vskrW------~~lw~~~~~l~~~~~~ 63 (286)
..-.+.+||.|++..|+.+++ -+|+..++.+-..- +++|+..-.+.|+...
T Consensus 198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQ 255 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQ 255 (332)
T ss_pred CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 345689999999999999999 48888887764333 3457665555555443
No 88
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=42.70 E-value=13 Score=35.29 Aligned_cols=109 Identities=21% Similarity=0.262 Sum_probs=54.2
Q ss_pred CCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccceeec----
Q 042585 113 SLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVNVSS---- 188 (286)
Q Consensus 113 ~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~---- 188 (286)
.+|..+.-..+|..|+.+.|.+....+-...+.+|+.|++..+++.+- -+++. |=.|..|+++ |..+..+.+
T Consensus 157 ~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~l-p~El~--~LpLi~lDfS-cNkis~iPv~fr~ 232 (722)
T KOG0532|consen 157 SLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDL-PEELC--SLPLIRLDFS-CNKISYLPVDFRK 232 (722)
T ss_pred cCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhC-CHHHh--CCceeeeecc-cCceeecchhhhh
Confidence 344444444455555555555433323333455555555555541110 11111 4457777777 655554444
Q ss_pred ccCCceEEecCcccChhhHHH-HHhcCCCccEEecccc
Q 042585 189 CKNLKHLDLCDGSYTDEWLNS-QISGLPLLEQLHISLC 225 (286)
Q Consensus 189 ~~~L~~L~l~~~~~~~~~l~~-~~~~~p~L~~L~l~~c 225 (286)
+.+|+.|-+.++......-.. ..-...=.++|++..|
T Consensus 233 m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 233 MRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 788888888877655321111 1112233567777777
No 89
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=40.31 E-value=3.8 Score=38.61 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=16.9
Q ss_pred CCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585 191 NLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 191 ~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
.|.+|+++++.+.. +-.-..++..|++|-+...
T Consensus 212 pLi~lDfScNkis~--iPv~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 212 PLIRLDFSCNKISY--LPVDFRKMRHLQVLQLENN 244 (722)
T ss_pred ceeeeecccCceee--cchhhhhhhhheeeeeccC
Confidence 35666666555442 1122345566666666554
No 90
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=39.92 E-value=7.1 Score=34.17 Aligned_cols=39 Identities=26% Similarity=0.495 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHccCChhhHHHhhhhhhhhHhhhccCC
Q 042585 17 ISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHTFP 55 (286)
Q Consensus 17 i~~LPdeil~~Ils~L~~~d~~~~~~vskrW~~lw~~~~ 55 (286)
+..+|++++..|++++-.+++.+++.|++|-..+-+..|
T Consensus 8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~ 46 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLP 46 (386)
T ss_pred hhhcccccceeeecccchhhhhcceeechHHhhhhhccc
Confidence 467899999999999999999999999999987644444
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=36.96 E-value=25 Score=33.17 Aligned_cols=81 Identities=21% Similarity=0.185 Sum_probs=51.3
Q ss_pred HHHHHHhcCCCcceEEeeeccc--c---ceeec-ccCCceEEecCc--ccChhhHHHHHhcCCCccEEecccccCccccc
Q 042585 161 VMNNLFAQSPLLQHLEFVRYNN--L---VNVSS-CKNLKHLDLCDG--SYTDEWLNSQISGLPLLEQLHISLCNNIESIT 232 (286)
Q Consensus 161 ~l~~l~~~cp~Le~L~l~~c~~--~---~~~~~-~~~L~~L~l~~~--~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~ 232 (286)
.++.+....|.+..+.+++..- + ..+.. .|+|+.|+|+++ .+..+ .+.-......|++|.+.|.+-.+...
T Consensus 209 ~L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 209 VLKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLCTTFS 287 (585)
T ss_pred HHHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCccccchh
Confidence 3466667899999999876432 2 22333 899999999976 33332 22334567889999999954333322
Q ss_pred -----cc-----cccccEEE
Q 042585 233 -----IS-----SLRLKKLI 242 (286)
Q Consensus 233 -----i~-----~p~L~~L~ 242 (286)
++ =|.|..||
T Consensus 288 ~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 288 DRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhHHHHHHHHHhcchheeec
Confidence 11 27777765
No 92
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=36.30 E-value=24 Score=17.76 Aligned_cols=12 Identities=42% Similarity=0.484 Sum_probs=7.5
Q ss_pred CCccEEEcceee
Q 042585 145 LSLRKLHLSDVY 156 (286)
Q Consensus 145 ~~L~~L~L~~~~ 156 (286)
++|++|+|.++.
T Consensus 2 ~~L~~L~L~~N~ 13 (26)
T smart00369 2 PNLRELDLSNNQ 13 (26)
T ss_pred CCCCEEECCCCc
Confidence 456666666665
No 93
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=36.30 E-value=24 Score=17.76 Aligned_cols=12 Identities=42% Similarity=0.484 Sum_probs=7.5
Q ss_pred CCccEEEcceee
Q 042585 145 LSLRKLHLSDVY 156 (286)
Q Consensus 145 ~~L~~L~L~~~~ 156 (286)
++|++|+|.++.
T Consensus 2 ~~L~~L~L~~N~ 13 (26)
T smart00370 2 PNLRELDLSNNQ 13 (26)
T ss_pred CCCCEEECCCCc
Confidence 456666666665
No 94
>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A. In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane
Probab=26.56 E-value=94 Score=22.41 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=28.2
Q ss_pred ccCCCCCHHHHHHHHccCChhhHHHhhhhhhhh
Q 042585 15 DRISALPQPILQLIMSFLPFKQVVQICMVSKVW 47 (286)
Q Consensus 15 d~i~~LPdeil~~Ils~L~~~d~~~~~~vskrW 47 (286)
+-++++|.+++..||..+++.++.+...-|..-
T Consensus 2 ~dvG~~py~ll~piL~~~~~~QL~~iE~~np~l 34 (109)
T PF06881_consen 2 EDVGDVPYHLLRPILEKCSPEQLRRIEDNNPHL 34 (109)
T ss_pred CccCCCCHHHHHHHHccCCHHHHHHHHHhCCCc
Confidence 457899999999999999999999988776544
No 95
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=25.67 E-value=6.7 Score=36.60 Aligned_cols=17 Identities=35% Similarity=0.718 Sum_probs=8.9
Q ss_pred ccCCceEEecCcccChh
Q 042585 189 CKNLKHLDLCDGSYTDE 205 (286)
Q Consensus 189 ~~~L~~L~l~~~~~~~~ 205 (286)
+++++.|.+.++.+++.
T Consensus 289 ~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 289 CRQLEELSLSNNPLTDY 305 (478)
T ss_pred hHHHHHhhcccCccccH
Confidence 44555555555544443
No 96
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=21.84 E-value=64 Score=16.86 Aligned_cols=15 Identities=20% Similarity=0.415 Sum_probs=10.6
Q ss_pred HHHhcCCCcceEEee
Q 042585 164 NLFAQSPLLQHLEFV 178 (286)
Q Consensus 164 ~l~~~cp~Le~L~l~ 178 (286)
.++..+|+|+.|+..
T Consensus 7 ~Vi~~LPqL~~LD~~ 21 (26)
T smart00446 7 KVIRLLPQLRKLDXX 21 (26)
T ss_pred HHHHHCCccceeccc
Confidence 356678888888764
Done!