Query 042585
Match_columns 286
No_of_seqs 159 out of 1555
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 13:05:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042585.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042585hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.9 4.3E-23 1.5E-27 180.7 12.0 231 13-253 5-264 (336)
2 2p1m_B Transport inhibitor res 99.8 1.3E-20 4.5E-25 176.9 10.3 212 14-246 3-245 (594)
3 3ogk_B Coronatine-insensitive 99.8 4.2E-19 1.4E-23 166.6 10.3 193 13-226 5-231 (592)
4 2ast_B S-phase kinase-associat 99.2 9.6E-12 3.3E-16 108.3 6.2 156 94-254 69-240 (336)
5 3e4g_A ATP synthase subunit S, 99.2 2.5E-11 8.4E-16 95.5 6.6 102 111-232 50-156 (176)
6 4fcg_A Uncharacterized protein 99.1 4.1E-10 1.4E-14 98.0 10.7 82 94-181 80-161 (328)
7 3ogk_B Coronatine-insensitive 99.1 1.1E-10 3.8E-15 109.2 7.5 138 118-257 374-533 (592)
8 4fcg_A Uncharacterized protein 99.1 4E-10 1.4E-14 98.2 9.5 58 95-156 104-161 (328)
9 3e4g_A ATP synthase subunit S, 99.1 6.3E-11 2.2E-15 93.2 3.2 90 144-253 60-156 (176)
10 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 2E-10 7E-15 72.1 4.1 40 13-52 5-44 (53)
11 4ezg_A Putative uncharacterize 99.0 2.8E-09 9.7E-14 85.7 10.3 103 118-225 62-169 (197)
12 2p1m_B Transport inhibitor res 98.9 5.8E-10 2E-14 104.3 5.8 128 120-248 370-518 (594)
13 2ell_A Acidic leucine-rich nuc 98.9 1.9E-09 6.6E-14 84.3 7.4 128 95-226 24-158 (168)
14 4ezg_A Putative uncharacterize 98.9 8.7E-09 3E-13 82.8 10.4 123 95-226 66-192 (197)
15 2ca6_A RAN GTPase-activating p 98.9 2E-09 6.9E-14 95.5 6.5 154 95-248 94-286 (386)
16 2je0_A Acidic leucine-rich nuc 98.9 3.4E-09 1.2E-13 81.1 6.7 125 95-223 17-148 (149)
17 2ca6_A RAN GTPase-activating p 98.8 1.8E-09 6.3E-14 95.8 4.4 155 95-249 122-316 (386)
18 4fmz_A Internalin; leucine ric 98.8 1.8E-08 6.3E-13 87.8 10.6 144 95-250 177-325 (347)
19 2ell_A Acidic leucine-rich nuc 98.8 2.9E-09 1E-13 83.2 4.9 125 121-248 23-159 (168)
20 2je0_A Acidic leucine-rich nuc 98.8 4.5E-09 1.5E-13 80.4 5.1 121 121-245 16-149 (149)
21 1h6u_A Internalin H; cell adhe 98.8 2.7E-08 9.2E-13 85.7 10.4 119 95-225 63-183 (308)
22 2ra8_A Uncharacterized protein 98.8 4.7E-08 1.6E-12 86.1 11.8 158 95-257 139-327 (362)
23 1z7x_W Ribonuclease inhibitor; 98.8 5.2E-09 1.8E-13 94.8 5.1 154 94-248 27-211 (461)
24 4fmz_A Internalin; leucine ric 98.7 4.1E-08 1.4E-12 85.6 10.3 119 95-225 66-187 (347)
25 1h6t_A Internalin B; cell adhe 98.7 4.7E-08 1.6E-12 83.5 10.4 75 168-246 132-210 (291)
26 1wwl_A Monocyte differentiatio 98.7 2.3E-08 7.7E-13 86.2 8.4 150 94-247 94-264 (312)
27 1h6u_A Internalin H; cell adhe 98.7 4.8E-08 1.7E-12 84.1 10.1 142 95-248 85-229 (308)
28 1m9s_A Internalin B; cell inva 98.7 2.2E-08 7.5E-13 94.2 8.2 123 118-248 83-209 (605)
29 3un9_A NLR family member X1; l 98.7 3.2E-09 1.1E-13 94.0 2.3 162 89-252 66-254 (372)
30 1h6t_A Internalin B; cell adhe 98.7 4.7E-08 1.6E-12 83.5 9.4 142 95-248 46-190 (291)
31 1m9s_A Internalin B; cell inva 98.7 3.9E-08 1.3E-12 92.4 9.1 101 118-225 61-163 (605)
32 1z7x_W Ribonuclease inhibitor; 98.7 7.7E-09 2.6E-13 93.7 4.0 130 96-225 200-351 (461)
33 3rfs_A Internalin B, repeat mo 98.7 3.5E-08 1.2E-12 83.4 6.8 146 95-247 63-216 (272)
34 1o6v_A Internalin A; bacterial 98.7 1.2E-07 4.2E-12 86.2 10.9 100 119-225 240-341 (466)
35 2z66_A Variable lymphocyte rec 98.6 5.4E-09 1.9E-13 89.7 1.7 168 95-268 78-260 (306)
36 2z66_A Variable lymphocyte rec 98.6 2E-08 6.7E-13 86.2 5.2 153 95-250 101-262 (306)
37 2o6q_A Variable lymphocyte rec 98.6 4.1E-08 1.4E-12 82.7 6.9 146 95-247 37-192 (270)
38 2id5_A Lingo-1, leucine rich r 98.6 8.8E-08 3E-12 87.3 9.1 149 95-248 56-212 (477)
39 3rfs_A Internalin B, repeat mo 98.6 3.7E-08 1.3E-12 83.1 6.1 147 94-249 40-194 (272)
40 4glp_A Monocyte differentiatio 98.6 5.5E-08 1.9E-12 83.7 7.1 150 94-247 90-262 (310)
41 1o6v_A Internalin A; bacterial 98.6 1.2E-07 4.1E-12 86.2 9.6 143 95-249 243-388 (466)
42 3rgz_A Protein brassinosteroid 98.6 4.1E-08 1.4E-12 94.9 6.4 149 95-247 100-280 (768)
43 1ozn_A Reticulon 4 receptor; N 98.6 4.9E-08 1.7E-12 82.8 6.0 149 95-248 56-213 (285)
44 1wwl_A Monocyte differentiatio 98.6 7.3E-08 2.5E-12 83.0 7.1 150 94-248 120-286 (312)
45 2o6q_A Variable lymphocyte rec 98.6 7.3E-08 2.5E-12 81.2 7.0 147 95-248 61-217 (270)
46 2z63_A TOLL-like receptor 4, v 98.6 8E-09 2.7E-13 96.1 0.9 133 116-248 367-506 (570)
47 3m19_A Variable lymphocyte rec 98.6 6.4E-08 2.2E-12 80.7 6.3 149 95-248 35-191 (251)
48 1xeu_A Internalin C; cellular 98.6 8.8E-08 3E-12 80.6 7.2 142 94-248 40-184 (263)
49 3zyj_A Leucine-rich repeat-con 98.6 7.4E-08 2.5E-12 87.0 7.0 104 95-202 88-197 (440)
50 3zyi_A Leucine-rich repeat-con 98.6 7.8E-08 2.7E-12 87.1 7.1 84 95-182 99-183 (452)
51 1ogq_A PGIP-2, polygalacturona 98.6 8.7E-08 3E-12 82.6 7.1 106 95-202 50-161 (313)
52 4glp_A Monocyte differentiatio 98.6 7.6E-08 2.6E-12 82.8 6.4 154 95-249 117-285 (310)
53 1ozn_A Reticulon 4 receptor; N 98.6 1.1E-07 3.6E-12 80.7 7.1 150 95-250 80-239 (285)
54 1ogq_A PGIP-2, polygalacturona 98.5 8.6E-08 2.9E-12 82.7 6.4 104 95-202 76-186 (313)
55 1a9n_A U2A', U2A'; complex (nu 98.5 5.6E-08 1.9E-12 76.5 4.8 123 120-246 17-150 (176)
56 2z7x_B TOLL-like receptor 1, v 98.5 5.5E-07 1.9E-11 82.8 12.1 146 119-270 321-482 (520)
57 3vq2_A TLR4, TOLL-like recepto 98.5 2.8E-08 9.7E-13 93.2 3.4 127 119-247 396-532 (606)
58 3bz5_A Internalin-J, INLJ; leu 98.5 2.3E-07 7.8E-12 84.4 9.1 138 94-246 41-180 (457)
59 2xwt_C Thyrotropin receptor; s 98.5 2.2E-07 7.5E-12 76.7 8.2 123 119-246 77-215 (239)
60 3rgz_A Protein brassinosteroid 98.5 1.2E-07 4E-12 91.7 7.2 135 113-249 409-551 (768)
61 2z80_A TOLL-like receptor 2, v 98.5 3.1E-08 1.1E-12 86.8 2.9 12 236-247 222-233 (353)
62 2o6s_A Variable lymphocyte rec 98.5 3.3E-08 1.1E-12 79.9 2.8 123 118-246 48-175 (208)
63 3oja_A Leucine-rich immune mol 98.5 1.2E-07 4.1E-12 86.9 6.4 149 95-247 34-202 (487)
64 3goz_A Leucine-rich repeat-con 98.5 1.3E-07 4.6E-12 83.1 6.2 125 122-247 109-264 (362)
65 3zyi_A Leucine-rich repeat-con 98.5 8E-08 2.7E-12 87.1 4.9 127 95-225 75-206 (452)
66 1ds9_A Outer arm dynein; leuci 98.5 3.9E-08 1.3E-12 79.0 2.5 112 112-226 38-151 (198)
67 3vq2_A TLR4, TOLL-like recepto 98.5 8.9E-08 3.1E-12 89.8 5.3 134 116-251 418-560 (606)
68 3v47_A TOLL-like receptor 5B a 98.5 6.5E-08 2.2E-12 87.4 4.1 127 95-225 30-164 (455)
69 3goz_A Leucine-rich repeat-con 98.5 1E-07 3.6E-12 83.8 5.3 152 95-247 22-207 (362)
70 1xeu_A Internalin C; cellular 98.5 3.5E-07 1.2E-11 76.9 8.1 126 117-251 36-165 (263)
71 2xwt_C Thyrotropin receptor; s 98.5 2.1E-07 7.1E-12 76.9 6.6 164 94-264 30-212 (239)
72 3zyj_A Leucine-rich repeat-con 98.5 9.4E-08 3.2E-12 86.3 4.6 127 95-225 64-195 (440)
73 3o53_A Protein LRIM1, AGAP0063 98.5 1E-07 3.4E-12 82.3 4.3 149 95-247 34-202 (317)
74 3t6q_A CD180 antigen; protein- 98.4 1.1E-07 3.7E-12 89.2 4.6 59 189-247 448-511 (606)
75 2id5_A Lingo-1, leucine rich r 98.4 4.8E-07 1.6E-11 82.3 8.8 126 95-225 104-258 (477)
76 1p9a_G Platelet glycoprotein I 98.4 1.1E-07 3.7E-12 81.2 3.9 145 95-247 31-183 (290)
77 2z7x_B TOLL-like receptor 1, v 98.4 1.1E-07 3.8E-12 87.5 3.8 151 95-251 324-483 (520)
78 2z62_A TOLL-like receptor 4, v 98.4 1.2E-07 4.1E-12 80.0 3.8 126 95-225 28-159 (276)
79 3o6n_A APL1; leucine-rich repe 98.4 7.3E-07 2.5E-11 79.0 9.0 86 117-203 88-178 (390)
80 2z81_A CD282 antigen, TOLL-lik 98.4 8.2E-08 2.8E-12 88.9 2.8 38 119-156 71-109 (549)
81 3a79_B TLR6, VLRB.59, TOLL-lik 98.4 2E-06 6.8E-11 80.0 12.0 125 119-248 350-485 (562)
82 3t6q_A CD180 antigen; protein- 98.4 3.5E-07 1.2E-11 85.7 6.9 59 189-248 375-437 (606)
83 3o6n_A APL1; leucine-rich repe 98.4 2.9E-07 1E-11 81.6 6.0 126 95-226 45-176 (390)
84 3o53_A Protein LRIM1, AGAP0063 98.4 2.3E-07 7.8E-12 80.1 4.9 13 144-156 119-131 (317)
85 3bz5_A Internalin-J, INLJ; leu 98.4 5E-07 1.7E-11 82.1 7.4 131 116-256 36-168 (457)
86 3un9_A NLR family member X1; l 98.4 8.8E-08 3E-12 84.7 2.3 126 121-247 71-222 (372)
87 3j0a_A TOLL-like receptor 5; m 98.4 4.6E-07 1.6E-11 88.5 7.2 127 95-225 24-158 (844)
88 2z81_A CD282 antigen, TOLL-lik 98.4 3.5E-07 1.2E-11 84.7 5.9 128 95-226 26-159 (549)
89 2z62_A TOLL-like receptor 4, v 98.4 3.6E-07 1.2E-11 77.0 5.6 147 95-247 52-211 (276)
90 2z80_A TOLL-like receptor 2, v 98.4 3.8E-06 1.3E-10 73.3 12.3 61 189-250 248-315 (353)
91 3oja_B Anopheles plasmodium-re 98.4 9.3E-07 3.2E-11 83.0 8.7 105 95-203 75-184 (597)
92 1xku_A Decorin; proteoglycan, 98.4 1.2E-06 4.1E-11 75.8 8.8 146 95-247 76-251 (330)
93 3oja_A Leucine-rich immune mol 98.3 4.3E-07 1.5E-11 83.2 6.1 124 122-248 120-249 (487)
94 1a9n_A U2A', U2A'; complex (nu 98.3 6.3E-07 2.2E-11 70.4 6.1 126 95-226 19-151 (176)
95 2z63_A TOLL-like receptor 4, v 98.3 6.6E-07 2.3E-11 83.0 7.1 84 142-225 344-431 (570)
96 4eco_A Uncharacterized protein 98.3 5.3E-07 1.8E-11 85.3 6.1 126 95-225 206-363 (636)
97 2v9t_B SLIT homolog 2 protein 98.3 7.6E-07 2.6E-11 72.7 5.8 125 122-248 32-164 (220)
98 4ecn_A Leucine-rich repeat pro 98.3 8.1E-07 2.8E-11 86.7 7.0 147 95-247 448-630 (876)
99 2o6s_A Variable lymphocyte rec 98.3 9.6E-07 3.3E-11 71.2 6.4 133 112-249 20-161 (208)
100 3e6j_A Variable lymphocyte rec 98.3 5.4E-07 1.8E-11 74.1 5.0 101 122-225 40-145 (229)
101 4ecn_A Leucine-rich repeat pro 98.3 8.7E-07 3E-11 86.5 7.2 132 113-248 687-839 (876)
102 1p9a_G Platelet glycoprotein I 98.3 5.7E-07 2E-11 76.7 5.3 146 95-247 55-206 (290)
103 3v47_A TOLL-like receptor 5B a 98.3 4.8E-07 1.6E-11 81.7 5.0 129 120-251 273-410 (455)
104 1io0_A Tropomodulin; LRR prote 98.3 1E-06 3.5E-11 70.0 6.2 37 144-180 64-103 (185)
105 1xku_A Decorin; proteoglycan, 98.3 1.6E-06 5.5E-11 75.0 7.8 123 95-225 52-181 (330)
106 1ziw_A TOLL-like receptor 3; i 98.3 4.5E-07 1.6E-11 86.2 4.7 106 118-225 45-155 (680)
107 4eco_A Uncharacterized protein 98.3 1.2E-06 4.2E-11 82.8 7.4 37 168-204 247-288 (636)
108 2e31_A FBS1, F-box only protei 98.3 5.2E-07 1.8E-11 76.5 4.1 38 14-51 48-86 (297)
109 3m19_A Variable lymphocyte rec 98.3 5.5E-07 1.9E-11 74.9 4.2 127 95-226 59-190 (251)
110 2v9t_B SLIT homolog 2 protein 98.3 4.8E-07 1.7E-11 73.9 3.8 126 95-226 32-163 (220)
111 3e6j_A Variable lymphocyte rec 98.3 1.1E-06 3.7E-11 72.2 5.8 127 95-226 40-170 (229)
112 2v70_A SLIT-2, SLIT homolog 2 98.2 8.1E-07 2.8E-11 72.5 4.8 106 118-225 53-163 (220)
113 4g8a_A TOLL-like receptor 4; l 98.2 4.2E-07 1.4E-11 85.2 3.5 126 95-225 52-183 (635)
114 3oja_B Anopheles plasmodium-re 98.2 3.5E-06 1.2E-10 79.0 9.5 77 95-179 123-201 (597)
115 3l2o_B F-box only protein 4; s 98.2 3.1E-07 1.1E-11 77.2 1.8 35 16-50 4-38 (312)
116 1ziw_A TOLL-like receptor 3; i 98.2 2.5E-06 8.4E-11 81.1 7.9 127 95-225 49-181 (680)
117 2ra8_A Uncharacterized protein 98.2 3.5E-06 1.2E-10 74.1 8.2 62 162-223 164-227 (362)
118 1ds9_A Outer arm dynein; leuci 98.2 9.5E-07 3.3E-11 70.8 3.9 122 94-223 47-182 (198)
119 2v70_A SLIT-2, SLIT homolog 2 98.2 2.5E-06 8.5E-11 69.6 5.9 133 113-249 25-166 (220)
120 3a79_B TLR6, VLRB.59, TOLL-lik 98.1 1.1E-06 3.7E-11 81.8 3.9 151 95-251 353-512 (562)
121 3g06_A SSPH2 (leucine-rich rep 98.1 8.2E-06 2.8E-10 76.9 9.6 112 94-225 39-151 (622)
122 1io0_A Tropomodulin; LRR prote 98.1 5.5E-06 1.9E-10 65.7 6.7 105 142-247 33-162 (185)
123 2ft3_A Biglycan; proteoglycan, 98.1 1.8E-06 6.3E-11 74.7 4.0 101 95-202 54-159 (332)
124 3v7d_B Cell division control p 98.1 1.1E-06 3.9E-11 79.0 2.3 44 10-53 8-51 (464)
125 2xot_A Amphoterin-induced prot 98.1 2.8E-06 9.7E-11 74.6 4.7 36 189-225 111-146 (361)
126 2ft3_A Biglycan; proteoglycan, 98.1 3.9E-06 1.3E-10 72.6 5.4 122 96-226 34-158 (332)
127 1dce_A Protein (RAB geranylger 98.0 6.3E-06 2.2E-10 76.8 7.1 119 95-221 441-566 (567)
128 4g8a_A TOLL-like receptor 4; l 98.0 3E-06 1E-10 79.4 4.9 132 112-247 44-184 (635)
129 3j0a_A TOLL-like receptor 5; m 98.0 1.8E-05 6.2E-10 77.2 10.5 148 95-247 290-462 (844)
130 3g06_A SSPH2 (leucine-rich rep 98.0 1.6E-05 5.6E-10 74.8 8.8 33 121-156 80-112 (622)
131 1w8a_A SLIT protein; signaling 98.0 5.6E-06 1.9E-10 66.0 4.4 111 112-226 21-137 (192)
132 2ovr_B FBW7, F-BOX/WD repeat p 98.0 6E-06 2.1E-10 74.0 4.9 42 9-50 11-52 (445)
133 2wfh_A SLIT homolog 2 protein 98.0 6.3E-06 2.2E-10 65.8 4.5 102 122-225 31-136 (193)
134 1dce_A Protein (RAB geranylger 97.9 6.5E-06 2.2E-10 76.8 5.0 102 122-226 441-544 (567)
135 2o6r_A Variable lymphocyte rec 97.9 9.7E-06 3.3E-10 63.5 4.6 103 122-226 28-135 (177)
136 3cvr_A Invasion plasmid antige 97.9 1.6E-05 5.6E-10 74.0 6.8 55 94-157 58-112 (571)
137 1jl5_A Outer protein YOPM; leu 97.9 1.7E-05 5.8E-10 71.9 6.7 98 118-225 149-247 (454)
138 2xot_A Amphoterin-induced prot 97.9 5.8E-06 2E-10 72.6 3.5 145 95-246 39-199 (361)
139 1jl5_A Outer protein YOPM; leu 97.8 2.8E-05 9.4E-10 70.5 6.4 9 95-103 153-161 (454)
140 1p22_A F-BOX/WD-repeat protein 97.8 5.1E-06 1.8E-10 74.3 1.4 41 10-50 4-48 (435)
141 4b8c_D Glucose-repressible alc 97.7 5.4E-06 1.9E-10 79.6 0.3 106 116-225 218-326 (727)
142 1w8a_A SLIT protein; signaling 97.7 1.8E-05 6.2E-10 62.9 3.3 122 125-249 11-139 (192)
143 2o6r_A Variable lymphocyte rec 97.7 3.5E-05 1.2E-09 60.2 4.9 121 124-249 9-137 (177)
144 3cvr_A Invasion plasmid antige 97.7 4.4E-05 1.5E-09 71.1 5.9 110 95-225 80-190 (571)
145 2wfh_A SLIT homolog 2 protein 97.6 4.7E-05 1.6E-09 60.6 4.9 118 125-248 13-138 (193)
146 4b8c_D Glucose-repressible alc 97.6 6.8E-06 2.3E-10 78.9 -0.2 104 95-204 224-330 (727)
147 4ay9_X Follicle-stimulating ho 97.5 9.2E-05 3.2E-09 64.5 4.6 37 215-252 154-193 (350)
148 2r9u_A Variable lymphocyte rec 97.1 0.00044 1.5E-08 54.0 4.3 79 122-201 33-116 (174)
149 3g39_A Variable lymphocyte rec 97.1 0.0004 1.4E-08 53.9 4.1 87 113-202 23-114 (170)
150 3g39_A Variable lymphocyte rec 97.1 0.00026 9.1E-09 54.9 2.8 100 123-226 10-113 (170)
151 3sb4_A Hypothetical leucine ri 97.0 0.0023 8E-08 55.0 8.8 34 121-155 100-134 (329)
152 3rw6_A Nuclear RNA export fact 96.9 0.00078 2.7E-08 56.4 4.5 80 143-222 168-258 (267)
153 1pgv_A TMD-1, tropomodulin TMD 96.7 0.0039 1.3E-07 49.6 6.6 104 143-246 39-167 (197)
154 2r9u_A Variable lymphocyte rec 96.6 0.0014 4.7E-08 51.1 3.5 83 95-182 33-117 (174)
155 4fdw_A Leucine rich hypothetic 96.5 0.0036 1.2E-07 55.6 6.3 57 118-178 176-234 (401)
156 4ay9_X Follicle-stimulating ho 96.4 0.0013 4.5E-08 57.1 2.8 59 95-156 54-115 (350)
157 3sb4_A Hypothetical leucine ri 96.4 0.0017 6E-08 55.8 3.6 73 144-224 225-306 (329)
158 2ifg_A High affinity nerve gro 96.3 0.0029 1E-07 54.6 4.0 90 111-203 21-116 (347)
159 3rw6_A Nuclear RNA export fact 95.7 0.0076 2.6E-07 50.4 3.8 80 95-177 170-258 (267)
160 1pgv_A TMD-1, tropomodulin TMD 95.5 0.021 7.1E-07 45.4 5.5 23 145-167 98-120 (197)
161 4gt6_A Cell surface protein; l 94.9 0.022 7.7E-07 50.1 4.6 11 212-222 331-341 (394)
162 2ifg_A High affinity nerve gro 94.5 0.044 1.5E-06 47.1 5.4 97 126-226 12-114 (347)
163 4gt6_A Cell surface protein; l 92.6 0.077 2.6E-06 46.6 3.6 100 118-225 261-367 (394)
164 4fdw_A Leucine rich hypothetic 92.3 0.25 8.5E-06 43.6 6.5 121 95-225 226-355 (401)
165 4fs7_A Uncharacterized protein 91.8 0.18 6.2E-06 44.2 4.9 118 118-245 249-375 (394)
166 4fs7_A Uncharacterized protein 90.8 0.58 2E-05 40.9 7.2 118 117-244 225-351 (394)
167 4h09_A Hypothetical leucine ri 89.4 0.57 1.9E-05 40.5 6.0 96 120-223 215-318 (379)
168 4h09_A Hypothetical leucine ri 86.2 0.57 2E-05 40.5 4.0 98 118-223 236-341 (379)
169 3rfe_A Platelet glycoprotein I 66.2 4.7 0.00016 29.1 3.2 42 122-163 31-74 (130)
170 2kwv_A RAD30 homolog B, DNA po 35.8 23 0.00078 20.4 2.0 19 13-31 17-35 (48)
171 2lz0_A Uncharacterized protein 25.4 46 0.0016 22.5 2.6 35 141-179 16-52 (100)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=4.3e-23 Score=180.65 Aligned_cols=231 Identities=15% Similarity=0.182 Sum_probs=152.7
Q ss_pred CcccCCCCCHHHHHHHHccCChhhHHHhhhhhhhhHhhhcc---CCceEeecCCCCCcchhhhHHHHHHHHHHHh-----
Q 042585 13 NVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHT---FPDLEIDKVKFLGPSKKLTVKTYGSEAALNF----- 84 (286)
Q Consensus 13 ~~d~i~~LPdeil~~Ils~L~~~d~~~~~~vskrW~~lw~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~----- 84 (286)
+...|++||||++.+||+||+.+|+++++.|||+|+++... ...+++....+.. ..+.+.....
T Consensus 5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~--------~~~~~~~~~~l~~L~ 76 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHP--------DVTGRLLSQGVIAFR 76 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCH--------HHHHHHHHTTCSEEE
T ss_pred ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCCH--------HHHHhhhhccceEEE
Confidence 45568999999999999999999999999999999998543 2234544332221 1121111000
Q ss_pred -----HhH-HHHHHHhCCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeecc-CCcCcccCCCccEEEcceee-
Q 042585 85 -----ANR-CISYAIERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDVY- 156 (286)
Q Consensus 85 -----~~~-~~~~~~~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~- 156 (286)
+.. +.......++++|+++... .....++..+..+++|++|++++|.+.. .......+++|++|+|++|.
T Consensus 77 l~~n~l~~~~~~~~~~~~L~~L~L~~~~--l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~ 154 (336)
T 2ast_B 77 CPRSFMDQPLAEHFSPFRVQHMDLSNSV--IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 154 (336)
T ss_dssp CTTCEECSCCCSCCCCBCCCEEECTTCE--ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBS
T ss_pred cCCccccccchhhccCCCCCEEEccCCC--cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCC
Confidence 000 0000001455666665111 0112255566778888888888887632 21234458999999999996
Q ss_pred eChHHHHHHHhcCCCcceEEeeeccccce------eeccc-CCceEEecCc--ccChhhHHHHHhcCCCccEEecccccC
Q 042585 157 ADDQVMNNLFAQSPLLQHLEFVRYNNLVN------VSSCK-NLKHLDLCDG--SYTDEWLNSQISGLPLLEQLHISLCNN 227 (286)
Q Consensus 157 ~~~~~l~~l~~~cp~Le~L~l~~c~~~~~------~~~~~-~L~~L~l~~~--~~~~~~l~~~~~~~p~L~~L~l~~c~~ 227 (286)
+++.++..++..||+|++|++++|....+ +..++ +|++|++.+| .+++..+......+|+|++|++++|..
T Consensus 155 l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~ 234 (336)
T 2ast_B 155 FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 234 (336)
T ss_dssp CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc
Confidence 88888888888899999999998833322 22278 9999999987 567666667777899999999999875
Q ss_pred cccccc----ccccccEEEeecccCCcccc
Q 042585 228 IESITI----SSLRLKKLIINTCESNTIFS 253 (286)
Q Consensus 228 ~~~~~i----~~p~L~~L~ls~c~~~~~~~ 253 (286)
+++..+ ..++|+.|++++|...+...
T Consensus 235 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 235 LKNDCFQEFFQLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp CCGGGGGGGGGCTTCCEEECTTCTTCCGGG
T ss_pred CCHHHHHHHhCCCCCCEeeCCCCCCCCHHH
Confidence 544322 24889999999987666553
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=1.3e-20 Score=176.88 Aligned_cols=212 Identities=14% Similarity=0.108 Sum_probs=144.4
Q ss_pred cccCCCCCHHHHHHHHccCC-hhhHHHhhhhhhhhHhhhcc-CCceEeecCCCCCcchhhhHHHHHHHHHHHhHhHHHHH
Q 042585 14 VDRISALPQPILQLIMSFLP-FKQVVQICMVSKVWLQAWHT-FPDLEIDKVKFLGPSKKLTVKTYGSEAALNFANRCISY 91 (286)
Q Consensus 14 ~d~i~~LPdeil~~Ils~L~-~~d~~~~~~vskrW~~lw~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 91 (286)
.|.|+.||||++.+||+||+ .+|+++++.|||+|+++... ...+.+....... .. ....
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~--~~----~~~~------------- 63 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVS--PA----TVIR------------- 63 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSC--HH----HHHH-------------
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccC--HH----HHHh-------------
Confidence 48999999999999999999 99999999999999987211 2234443221111 00 1111
Q ss_pred HHhCCceEEEEEeccCCCcccCC-------------CcchhccCCccEEEEeceeecc-CCcCc-ccCCCccEEEcceee
Q 042585 92 AIERNVEELEVEHLRRLDTWNSL-------------PQMVLRSKSIKVLTLQNYKLES-LGNDD-VKLLSLRKLHLSDVY 156 (286)
Q Consensus 92 ~~~~~l~~L~l~~~~~~~~~~~l-------------~~~~~~~~~L~~L~L~~~~~~~-~~~~~-~~~~~L~~L~L~~~~ 156 (286)
.-++++++++..... ...+.+ +.....+++|++|+|++|.+.. ..... ..+++|++|+|.+|.
T Consensus 64 -~~~~L~~L~L~~~~~-~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 64 -RFPKVRSVELKGKPH-FADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp -HCTTCCEEEEECSCG-GGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred -hCCCceEEeccCCCc-hhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 126799999983220 111221 1223478999999999988733 11122 269999999999997
Q ss_pred -eChHHHHHHHhcCCCcceEEeeecccc-------ceee-cccCCceEEecCcc--cChhhHHHHHhcCCCccEEecccc
Q 042585 157 -ADDQVMNNLFAQSPLLQHLEFVRYNNL-------VNVS-SCKNLKHLDLCDGS--YTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 157 -~~~~~l~~l~~~cp~Le~L~l~~c~~~-------~~~~-~~~~L~~L~l~~~~--~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
+++.++..+...||+|++|++++|... ..+. .+++|++|++.++. +++..+..+...+|+|++|++.+|
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 999999999999999999999987621 1222 27899999999875 667778788888999999999998
Q ss_pred cCccccc---cccccccEEEeecc
Q 042585 226 NNIESIT---ISSLRLKKLIINTC 246 (286)
Q Consensus 226 ~~~~~~~---i~~p~L~~L~ls~c 246 (286)
..++.+. ...++|+.|+++.|
T Consensus 222 ~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 222 VPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp SCHHHHHHHHHHCTTCSEEECSBC
T ss_pred CcHHHHHHHHhcCCcceEcccccc
Confidence 6554421 23578888876544
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.78 E-value=4.2e-19 Score=166.63 Aligned_cols=193 Identities=9% Similarity=0.118 Sum_probs=123.4
Q ss_pred CcccCC----CCCHHHHHHHHccC-ChhhHHHhhhhhhhhHhhhccCC-ceEeecCCCCCcchhhhHHHHHHHHHHHhHh
Q 042585 13 NVDRIS----ALPQPILQLIMSFL-PFKQVVQICMVSKVWLQAWHTFP-DLEIDKVKFLGPSKKLTVKTYGSEAALNFAN 86 (286)
Q Consensus 13 ~~d~i~----~LPdeil~~Ils~L-~~~d~~~~~~vskrW~~lw~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 86 (286)
+.|+++ +||||++.+||+|| +.+|+++++.|||+|++++...+ .+.+.. .+.. +...++
T Consensus 5 ~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~-~~~~---------~~~~~~----- 69 (592)
T 3ogk_B 5 DIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMAL-CYTA---------TPDRLS----- 69 (592)
T ss_dssp -------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESC-GGGS---------CHHHHH-----
T ss_pred hhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEee-cccc---------ChHHHH-----
Confidence 345554 89999999999999 89999999999999999854333 222211 1111 111111
Q ss_pred HHHHHHHhCCceEEEEEeccCCCccc-C------------CCcchhccCCccEEEEeceeecc-CCcC-cccCCC-ccEE
Q 042585 87 RCISYAIERNVEELEVEHLRRLDTWN-S------------LPQMVLRSKSIKVLTLQNYKLES-LGND-DVKLLS-LRKL 150 (286)
Q Consensus 87 ~~~~~~~~~~l~~L~l~~~~~~~~~~-~------------l~~~~~~~~~L~~L~L~~~~~~~-~~~~-~~~~~~-L~~L 150 (286)
..-++++++++..++. ...+ . ++.....+++|++|+|++|.+.. .... ...+|+ |++|
T Consensus 70 -----~~~~~L~~L~L~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 70 -----RRFPNLRSLKLKGKPR-AAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp -----HHCTTCSEEEEECSCG-GGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred -----HhCCCCeEEEecCCcc-hhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 0125688998872210 0000 0 11122278899999999887632 1111 122566 9999
Q ss_pred Ecceee-eChHHHHHHHhcCCCcceEEeeecccc-------ceeec-ccCCceEEecCcccC---hhhHHHHHhcCCCcc
Q 042585 151 HLSDVY-ADDQVMNNLFAQSPLLQHLEFVRYNNL-------VNVSS-CKNLKHLDLCDGSYT---DEWLNSQISGLPLLE 218 (286)
Q Consensus 151 ~L~~~~-~~~~~l~~l~~~cp~Le~L~l~~c~~~-------~~~~~-~~~L~~L~l~~~~~~---~~~l~~~~~~~p~L~ 218 (286)
+|.+|. +++.++..+...||+|++|++++|... ..+.. +++|++|++.++.++ ...+..+...+|+|+
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~ 223 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence 999988 888888888888999999999887521 11112 788888888876554 455667777888888
Q ss_pred EEeccccc
Q 042585 219 QLHISLCN 226 (286)
Q Consensus 219 ~L~l~~c~ 226 (286)
+|++.+|.
T Consensus 224 ~L~L~~~~ 231 (592)
T 3ogk_B 224 SVKVGDFE 231 (592)
T ss_dssp EEECSSCB
T ss_pred EEeccCcc
Confidence 88888764
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.22 E-value=9.6e-12 Score=108.29 Aligned_cols=156 Identities=18% Similarity=0.213 Sum_probs=110.7
Q ss_pred hCCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeecc--CCcCcccCCCccEEEcceeeeChHHHHHHHhcCCC
Q 042585 94 ERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLES--LGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPL 171 (286)
Q Consensus 94 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~ 171 (286)
..+++.+++.... -...+..+..+++|++|++++|.+.. .......+++|++|+|+++.+++.....+ ..||+
T Consensus 69 ~~~l~~L~l~~n~----l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l-~~~~~ 143 (336)
T 2ast_B 69 SQGVIAFRCPRSF----MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSN 143 (336)
T ss_dssp HTTCSEEECTTCE----ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTT
T ss_pred hccceEEEcCCcc----ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH-hcCCC
Confidence 3566777666111 01122235578899999999988742 22334568999999999998887776664 45999
Q ss_pred cceEEeeeccccce------eecccCCceEEecCc-ccChhhHHHHHhcCC-CccEEeccccc-Cccccc-----ccccc
Q 042585 172 LQHLEFVRYNNLVN------VSSCKNLKHLDLCDG-SYTDEWLNSQISGLP-LLEQLHISLCN-NIESIT-----ISSLR 237 (286)
Q Consensus 172 Le~L~l~~c~~~~~------~~~~~~L~~L~l~~~-~~~~~~l~~~~~~~p-~L~~L~l~~c~-~~~~~~-----i~~p~ 237 (286)
|++|++++|....+ +..+++|++|++.+| .+++..+......+| +|++|++++|. .+++.. -..|+
T Consensus 144 L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 223 (336)
T 2ast_B 144 LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 223 (336)
T ss_dssp CSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT
T ss_pred CCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCC
Confidence 99999998854321 222899999999988 888776767788899 99999999986 444322 23689
Q ss_pred ccEEEeecccCCccccc
Q 042585 238 LKKLIINTCESNTIFSF 254 (286)
Q Consensus 238 L~~L~ls~c~~~~~~~~ 254 (286)
|+.|++++|..++...+
T Consensus 224 L~~L~l~~~~~l~~~~~ 240 (336)
T 2ast_B 224 LVHLDLSDSVMLKNDCF 240 (336)
T ss_dssp CSEEECTTCTTCCGGGG
T ss_pred CCEEeCCCCCcCCHHHH
Confidence 99999999986655433
No 5
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.19 E-value=2.5e-11 Score=95.54 Aligned_cols=102 Identities=18% Similarity=0.173 Sum_probs=69.4
Q ss_pred ccCCCcchhccCCccEEEEeceeecc-CCcCcccCCCccEEEcceee-eChHHHHHHHhc---CCCcceEEeeeccccce
Q 042585 111 WNSLPQMVLRSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDVY-ADDQVMNNLFAQ---SPLLQHLEFVRYNNLVN 185 (286)
Q Consensus 111 ~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~-~~~~~l~~l~~~---cp~Le~L~l~~c~~~~~ 185 (286)
...+|......-+|++|++++|.+.. ......+|++|++|+|++|. ++|.++..+... ||+|++|++++|..
T Consensus 50 ~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~--- 126 (176)
T 3e4g_A 50 YNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN--- 126 (176)
T ss_dssp GGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTT---
T ss_pred cccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCc---
Confidence 34555543445678888888887732 22334578888888888888 888888887763 66777777776653
Q ss_pred eecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc
Q 042585 186 VSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT 232 (286)
Q Consensus 186 ~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~ 232 (286)
++|.++..+ ..+|+|++|++++|+.+++.+
T Consensus 127 ----------------ITD~Gl~~L-~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 127 ----------------VTDKGIIAL-HHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp ----------------CCHHHHHHG-GGCTTCCEEEEESCTTCCCHH
T ss_pred ----------------CCHHHHHHH-hcCCCCCEEECCCCCCCCchH
Confidence 566666444 356777777777777666654
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.10 E-value=4.1e-10 Score=98.05 Aligned_cols=82 Identities=16% Similarity=0.183 Sum_probs=50.6
Q ss_pred hCCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585 94 ERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ 173 (286)
Q Consensus 94 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 173 (286)
..++++|++.... -..+|..+..+++|++|+|+++.+.........+++|++|+|+++.++ .+..-+..+++|+
T Consensus 80 ~~~l~~L~L~~n~----l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELRSVP----LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLR 153 (328)
T ss_dssp STTCCEEEEESSC----CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCC
T ss_pred ccceeEEEccCCC----chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCC
Confidence 4678888887221 125666677777777777777766533233455777777777777643 1222245567777
Q ss_pred eEEeeecc
Q 042585 174 HLEFVRYN 181 (286)
Q Consensus 174 ~L~l~~c~ 181 (286)
.|++++|.
T Consensus 154 ~L~L~~n~ 161 (328)
T 4fcg_A 154 ELSIRACP 161 (328)
T ss_dssp EEEEEEET
T ss_pred EEECCCCC
Confidence 77776653
No 7
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.09 E-value=1.1e-10 Score=109.17 Aligned_cols=138 Identities=15% Similarity=0.148 Sum_probs=90.3
Q ss_pred hhccCCccEEEEeceeecc--CCcCcccCCCccEEEcce---ee-eCh----HHHHHHHhcCCCcceEEeeecccc-c--
Q 042585 118 VLRSKSIKVLTLQNYKLES--LGNDDVKLLSLRKLHLSD---VY-ADD----QVMNNLFAQSPLLQHLEFVRYNNL-V-- 184 (286)
Q Consensus 118 ~~~~~~L~~L~L~~~~~~~--~~~~~~~~~~L~~L~L~~---~~-~~~----~~l~~l~~~cp~Le~L~l~~c~~~-~-- 184 (286)
...|++|++|+++.+.+.. .......+++|++|+|.+ +. +++ .++..++.+||+|+.|+++.|.+. .
T Consensus 374 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 374 AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHH
T ss_pred HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHH
Confidence 3456777777775444422 101122377777777763 22 443 466666777788888887765431 1
Q ss_pred ---eeec-ccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCcccccc-----ccccccEEEeecccCCcccccc
Q 042585 185 ---NVSS-CKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITI-----SSLRLKKLIINTCESNTIFSFG 255 (286)
Q Consensus 185 ---~~~~-~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i-----~~p~L~~L~ls~c~~~~~~~~~ 255 (286)
.+.. +++|+.|++.+|.+++..+..+...+++|++|++++|. +++.++ ..++|+.|++++|. ++..++.
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~ 531 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQD 531 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTT
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHHHHH
Confidence 1222 78899999988888887777778889999999999987 443322 25899999999997 6665444
Q ss_pred cc
Q 042585 256 SI 257 (286)
Q Consensus 256 ~~ 257 (286)
.+
T Consensus 532 ~l 533 (592)
T 3ogk_B 532 LM 533 (592)
T ss_dssp GG
T ss_pred HH
Confidence 33
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.07 E-value=4e-10 Score=98.15 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=32.3
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceee
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY 156 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~ 156 (286)
.++++|+++... . ..+|..+..+++|++|+|+++.+.........+++|++|+|++|.
T Consensus 104 ~~L~~L~L~~n~---l-~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~ 161 (328)
T 4fcg_A 104 SHLQHMTIDAAG---L-MELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACP 161 (328)
T ss_dssp TTCSEEEEESSC---C-CCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEET
T ss_pred CCCCEEECCCCC---c-cchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCC
Confidence 466677776211 1 155555666666666666666554332334456666666666654
No 9
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.05 E-value=6.3e-11 Score=93.21 Aligned_cols=90 Identities=11% Similarity=0.127 Sum_probs=74.5
Q ss_pred CCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccceeecccCCceEEecCcccChhhHHHHHhc---CCCccEE
Q 042585 144 LLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVNVSSCKNLKHLDLCDGSYTDEWLNSQISG---LPLLEQL 220 (286)
Q Consensus 144 ~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~---~p~L~~L 220 (286)
-.+|++|+|++|.+++.++..+ .+||+|++|+|++|.. ++|+++..+... +++|++|
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~-------------------ItD~gL~~L~~~~~~~~~L~~L 119 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHY-------------------IEDGCLERLSQLENLQKSMLEM 119 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTT-------------------CCHHHHHHHHTCHHHHHHCCEE
T ss_pred CceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCc-------------------cCHHHHHHHHhcccccCCCCEE
Confidence 3569999999999999988875 5788888777777653 788888777763 7899999
Q ss_pred ecccccCccccccc----cccccEEEeecccCCcccc
Q 042585 221 HISLCNNIESITIS----SLRLKKLIINTCESNTIFS 253 (286)
Q Consensus 221 ~l~~c~~~~~~~i~----~p~L~~L~ls~c~~~~~~~ 253 (286)
++++|..+++.++. .++|++|++++|+.+++.+
T Consensus 120 ~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 120 EIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp EEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCHH
T ss_pred EcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCchH
Confidence 99999999987764 5899999999999988754
No 10
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.02 E-value=2e-10 Score=72.06 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=34.0
Q ss_pred CcccCCCCCHHHHHHHHccCChhhHHHhhhhhhhhHhhhc
Q 042585 13 NVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWH 52 (286)
Q Consensus 13 ~~d~i~~LPdeil~~Ils~L~~~d~~~~~~vskrW~~lw~ 52 (286)
..+.|+.||+|++.+||+||+.+|+++++.|||+|+.+..
T Consensus 5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 4567899999999999999999999999999999998644
No 11
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.98 E-value=2.8e-09 Score=85.67 Aligned_cols=103 Identities=20% Similarity=0.246 Sum_probs=45.1
Q ss_pred hhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc----eeecccCCc
Q 042585 118 VLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV----NVSSCKNLK 193 (286)
Q Consensus 118 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~----~~~~~~~L~ 193 (286)
+..+++|++|++++|.+... +....+++|++|+++++.+++..... +..+|+|+.|++++|.... .+..+++|+
T Consensus 62 l~~l~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCC-GGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred HhcCCCCCEEEccCCCCCcc-hhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 44455555555555544221 22334555555555555433322222 2345555555555443221 111245555
Q ss_pred eEEecCcc-cChhhHHHHHhcCCCccEEecccc
Q 042585 194 HLDLCDGS-YTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 194 ~L~l~~~~-~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
.|++++|. +++- .....+|+|++|++++|
T Consensus 140 ~L~L~~n~~i~~~---~~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 140 SIDLSYNGAITDI---MPLKTLPELKSLNIQFD 169 (197)
T ss_dssp EEECCSCTBCCCC---GGGGGCSSCCEEECTTB
T ss_pred EEEccCCCCcccc---HhhcCCCCCCEEECCCC
Confidence 55555443 3321 12344555555555554
No 12
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.94 E-value=5.8e-10 Score=104.29 Aligned_cols=128 Identities=13% Similarity=0.153 Sum_probs=78.2
Q ss_pred ccCCccEEEEeceeecc--CCcCcccCCCccEEEcc-----eee-eC----hHHHHHHHhcCCCcceEEeeecccc---c
Q 042585 120 RSKSIKVLTLQNYKLES--LGNDDVKLLSLRKLHLS-----DVY-AD----DQVMNNLFAQSPLLQHLEFVRYNNL---V 184 (286)
Q Consensus 120 ~~~~L~~L~L~~~~~~~--~~~~~~~~~~L~~L~L~-----~~~-~~----~~~l~~l~~~cp~Le~L~l~~c~~~---~ 184 (286)
.|++|++|.+..+.+.. .......+|+|++|+|. +|. ++ +.++..++..||+|+.|++++.... .
T Consensus 370 ~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~ 449 (594)
T 2p1m_B 370 GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFE 449 (594)
T ss_dssp HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHH
Confidence 35666666554444421 00111246777777777 344 55 5666666677777777777541111 1
Q ss_pred eeec-ccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCcccccc-----ccccccEEEeecccC
Q 042585 185 NVSS-CKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITI-----SSLRLKKLIINTCES 248 (286)
Q Consensus 185 ~~~~-~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i-----~~p~L~~L~ls~c~~ 248 (286)
.+.. +++|+.|++.+|.+++.++..+...+|+|++|++++|.. ++.++ ..++|+.|++++|+.
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 1222 677888888877777776666667788888888888765 33222 247888888888865
No 13
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.93 E-value=1.9e-09 Score=84.27 Aligned_cols=128 Identities=24% Similarity=0.202 Sum_probs=86.5
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH 174 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 174 (286)
.++++|+++... .....+|..+..+++|+.|++++|.+... .....+++|++|+|+++.++.. +..+...+|+|+.
T Consensus 24 ~~L~~L~l~~n~--l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCK--SNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCB--CBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCE
T ss_pred ccCCEEECCCCC--CChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCE
Confidence 578888888222 12235666667888899999988887554 4556688899999988885442 3445566888888
Q ss_pred EEeeeccccc-----eeecccCCceEEecCcccChhh--HHHHHhcCCCccEEeccccc
Q 042585 175 LEFVRYNNLV-----NVSSCKNLKHLDLCDGSYTDEW--LNSQISGLPLLEQLHISLCN 226 (286)
Q Consensus 175 L~l~~c~~~~-----~~~~~~~L~~L~l~~~~~~~~~--l~~~~~~~p~L~~L~l~~c~ 226 (286)
|+++++.... .+..+++|+.|+++++.++... .......+|+|++|++.+|.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 8888774321 2222788888888877655432 11355677888888887764
No 14
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.90 E-value=8.7e-09 Score=82.78 Aligned_cols=123 Identities=17% Similarity=0.229 Sum_probs=93.0
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeecc-CCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ 173 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 173 (286)
.++++|++.... ...+..+..+++|++|+++++.+.. .......+++|++|+|+++.+++..... +..+|+|+
T Consensus 66 ~~L~~L~l~~n~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~ 139 (197)
T 4ezg_A 66 HNIKDLTINNIH-----ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK-INTLPKVN 139 (197)
T ss_dssp TTCSEEEEESCC-----CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHH-HTTCSSCC
T ss_pred CCCCEEEccCCC-----CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHH-HhhCCCCC
Confidence 689999999222 2233467789999999999988843 2345667999999999999977655554 46799999
Q ss_pred eEEeeeccccce---eecccCCceEEecCcccChhhHHHHHhcCCCccEEeccccc
Q 042585 174 HLEFVRYNNLVN---VSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCN 226 (286)
Q Consensus 174 ~L~l~~c~~~~~---~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~ 226 (286)
.|++++|..... +..+++|++|++++|.+++- .....+|+|++|++.++.
T Consensus 140 ~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~---~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 140 SIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY---RGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCC---TTGGGCSSCCEEEECBC-
T ss_pred EEEccCCCCccccHhhcCCCCCCEEECCCCCCcCh---HHhccCCCCCEEEeeCcc
Confidence 999998863433 33389999999999887753 245678889999888753
No 15
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.88 E-value=2e-09 Score=95.55 Aligned_cols=154 Identities=18% Similarity=0.266 Sum_probs=89.5
Q ss_pred CCceEEEEE-eccCCCcccCCCcchhccCCccEEEEeceeecc-----CCcCcccC---------CCccEEEcceeeeCh
Q 042585 95 RNVEELEVE-HLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLES-----LGNDDVKL---------LSLRKLHLSDVYADD 159 (286)
Q Consensus 95 ~~l~~L~l~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-----~~~~~~~~---------~~L~~L~L~~~~~~~ 159 (286)
.++++|+++ +.-.......+|..+..+++|++|+|++|.+.. +......+ ++|++|+|+++.+++
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~ 173 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN 173 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCc
Confidence 567777776 221111112355566677777777777776621 00001112 778888887777665
Q ss_pred HHHHH---HHhcCCCcceEEeeecccc--------c-eeecccCCceEEecCcccChhhHH---HHHhcCCCccEEeccc
Q 042585 160 QVMNN---LFAQSPLLQHLEFVRYNNL--------V-NVSSCKNLKHLDLCDGSYTDEWLN---SQISGLPLLEQLHISL 224 (286)
Q Consensus 160 ~~l~~---l~~~cp~Le~L~l~~c~~~--------~-~~~~~~~L~~L~l~~~~~~~~~l~---~~~~~~p~L~~L~l~~ 224 (286)
.++.. .+..+++|+.|++++|... . .+..+++|+.|+++++.+++.+.. .....+|+|++|++++
T Consensus 174 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~ 253 (386)
T 2ca6_A 174 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND 253 (386)
T ss_dssp GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCC
Confidence 55553 3446778888888776432 0 222377888888887776643322 3345678888888887
Q ss_pred ccCccc----c--cc---ccccccEEEeecccC
Q 042585 225 CNNIES----I--TI---SSLRLKKLIINTCES 248 (286)
Q Consensus 225 c~~~~~----~--~i---~~p~L~~L~ls~c~~ 248 (286)
|.--.. + .+ ..++|+.|++++|..
T Consensus 254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred CCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 752211 0 11 147788888888753
No 16
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.87 E-value=3.4e-09 Score=81.14 Aligned_cols=125 Identities=26% Similarity=0.262 Sum_probs=78.0
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH 174 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 174 (286)
.++++++++... ..+..+|..+..+++|+.|++++|.+... .....+++|++|+|+++.++.. +......+|+|+.
T Consensus 17 ~~l~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSR--SNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCB--CBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCE
T ss_pred ccCeEEEccCCc--CChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCE
Confidence 467777777222 12235566666778888888888777443 4455678888888888875432 3445556788888
Q ss_pred EEeeecccc-----ceeecccCCceEEecCcccChhhH--HHHHhcCCCccEEecc
Q 042585 175 LEFVRYNNL-----VNVSSCKNLKHLDLCDGSYTDEWL--NSQISGLPLLEQLHIS 223 (286)
Q Consensus 175 L~l~~c~~~-----~~~~~~~~L~~L~l~~~~~~~~~l--~~~~~~~p~L~~L~l~ 223 (286)
|+++++... ..+..+++|++|+++++.+++... ......+|+|++|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 888766432 112237777888777776554211 1345667777777765
No 17
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.83 E-value=1.8e-09 Score=95.82 Aligned_cols=155 Identities=13% Similarity=0.060 Sum_probs=96.2
Q ss_pred CCceEEEEEecc-CCCcccCCCcchhcc---------CCccEEEEeceeec-cCCc----CcccCCCccEEEcceeeeCh
Q 042585 95 RNVEELEVEHLR-RLDTWNSLPQMVLRS---------KSIKVLTLQNYKLE-SLGN----DDVKLLSLRKLHLSDVYADD 159 (286)
Q Consensus 95 ~~l~~L~l~~~~-~~~~~~~l~~~~~~~---------~~L~~L~L~~~~~~-~~~~----~~~~~~~L~~L~L~~~~~~~ 159 (286)
.++++|+++... .+.....++..+..+ ++|++|++++|.+. ...+ ....+++|++|+|+++.+++
T Consensus 122 ~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 201 (386)
T 2ca6_A 122 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 201 (386)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCH
T ss_pred CCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCH
Confidence 678888887221 000112233333344 78888888888773 2111 22357888888888888777
Q ss_pred HHHHHHHh----cCCCcceEEeeecccc----c----eeecccCCceEEecCcccChhhHHHHHh-----cCCCccEEec
Q 042585 160 QVMNNLFA----QSPLLQHLEFVRYNNL----V----NVSSCKNLKHLDLCDGSYTDEWLNSQIS-----GLPLLEQLHI 222 (286)
Q Consensus 160 ~~l~~l~~----~cp~Le~L~l~~c~~~----~----~~~~~~~L~~L~l~~~~~~~~~l~~~~~-----~~p~L~~L~l 222 (286)
.++..+.. .+|+|+.|++++|... . .+..+++|++|++++|.+++.+...+.. .+++|++|++
T Consensus 202 ~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L 281 (386)
T 2ca6_A 202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRL 281 (386)
T ss_dssp HHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEEC
T ss_pred hHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEEC
Confidence 76555443 7888888888877542 1 1223788888888888777654333322 2788888888
Q ss_pred ccccCcc----ccc--c-c-cccccEEEeecccCC
Q 042585 223 SLCNNIE----SIT--I-S-SLRLKKLIINTCESN 249 (286)
Q Consensus 223 ~~c~~~~----~~~--i-~-~p~L~~L~ls~c~~~ 249 (286)
++|.--. .+. + . .|+|+.|++++|..-
T Consensus 282 ~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~ 316 (386)
T 2ca6_A 282 QYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316 (386)
T ss_dssp CSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred cCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence 8875332 121 1 2 478888888887543
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.82 E-value=1.8e-08 Score=87.81 Aligned_cols=144 Identities=15% Similarity=0.127 Sum_probs=90.7
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH 174 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 174 (286)
.++++++++... -..++. +..+++|+.|+++++.+... +....+++|++|+++++.+++... ...+|+|++
T Consensus 177 ~~L~~L~l~~n~----l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~ 247 (347)
T 4fmz_A 177 TDLYSLSLNYNQ----IEDISP-LASLTSLHYFTAYVNQITDI-TPVANMTRLNSLKIGNNKITDLSP---LANLSQLTW 247 (347)
T ss_dssp TTCSEEECTTSC----CCCCGG-GGGCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCCGG---GTTCTTCCE
T ss_pred CCCCEEEccCCc----cccccc-ccCCCccceeecccCCCCCC-chhhcCCcCCEEEccCCccCCCcc---hhcCCCCCE
Confidence 678888887211 112222 55678888888888777442 225567888888888887433221 567888888
Q ss_pred EEeeecccc--ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCcccc--c-cccccccEEEeecccCC
Q 042585 175 LEFVRYNNL--VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESI--T-ISSLRLKKLIINTCESN 249 (286)
Q Consensus 175 L~l~~c~~~--~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~--~-i~~p~L~~L~ls~c~~~ 249 (286)
|++++|... ..+..+++|++|+++++.+++- .....+++|++|++++|.-.... . -..++|+.|++++|...
T Consensus 248 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 248 LEIGTNQISDINAVKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp EECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCC
T ss_pred EECCCCccCCChhHhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccc
Confidence 888876432 2222377888888887766543 33567788888888887432111 1 12477888888887643
Q ss_pred c
Q 042585 250 T 250 (286)
Q Consensus 250 ~ 250 (286)
+
T Consensus 325 ~ 325 (347)
T 4fmz_A 325 D 325 (347)
T ss_dssp C
T ss_pred c
Confidence 3
No 19
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.82 E-value=2.9e-09 Score=83.19 Aligned_cols=125 Identities=20% Similarity=0.195 Sum_probs=91.4
Q ss_pred cCCccEEEEeceeec--cCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccceee---c-ccCCce
Q 042585 121 SKSIKVLTLQNYKLE--SLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVNVS---S-CKNLKH 194 (286)
Q Consensus 121 ~~~L~~L~L~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~---~-~~~L~~ 194 (286)
.++|+.|++++|.+. ........+++|++|+|.++.++.. ..+..+++|+.|+++++.....+. . +++|+.
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 378999999999886 3433446799999999999995543 345679999999999876433222 2 899999
Q ss_pred EEecCcccChhhHHHHHhcCCCccEEecccccCccc------cccccccccEEEeecccC
Q 042585 195 LDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIES------ITISSLRLKKLIINTCES 248 (286)
Q Consensus 195 L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~------~~i~~p~L~~L~ls~c~~ 248 (286)
|+++++.+++-........+++|++|++++|.-... ..-..|+|+.|++++|..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 999998876521113456889999999999743221 112258999999999854
No 20
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.80 E-value=4.5e-09 Score=80.45 Aligned_cols=121 Identities=20% Similarity=0.180 Sum_probs=86.0
Q ss_pred cCCccEEEEeceeec--cCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccccee----ecccCCce
Q 042585 121 SKSIKVLTLQNYKLE--SLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVNV----SSCKNLKH 194 (286)
Q Consensus 121 ~~~L~~L~L~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~----~~~~~L~~ 194 (286)
.++|+.|++++|.+. ........+++|++|++.++.+++. ..+..+++|+.|+++++.....+ ..+++|+.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 378899999999886 3434446799999999999985543 34567899999999987543212 12899999
Q ss_pred EEecCcccChhhHHHHHhcCCCccEEecccccCccccc------c-ccccccEEEeec
Q 042585 195 LDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT------I-SSLRLKKLIINT 245 (286)
Q Consensus 195 L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~------i-~~p~L~~L~ls~ 245 (286)
|+++++.+++-........+|+|++|++++|.- +.+. + ..|+|+.|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEV-TNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGG-GGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcc-cchHHHHHHHHHHCCCcccccCCC
Confidence 999988877632224457889999999999742 2221 1 147888887653
No 21
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.79 E-value=2.7e-08 Score=85.70 Aligned_cols=119 Identities=20% Similarity=0.189 Sum_probs=56.9
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH 174 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 174 (286)
.++++|+++... -..++. +..+++|++|+++++.+... +....+++|++|+|+++.+++- .. +..+++|+.
T Consensus 63 ~~L~~L~L~~n~----i~~~~~-~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~ 133 (308)
T 1h6u_A 63 NNLIGLELKDNQ----ITDLAP-LKNLTKITELELSGNPLKNV-SAIAGLQSIKTLDLTSTQITDV--TP-LAGLSNLQV 133 (308)
T ss_dssp TTCCEEECCSSC----CCCCGG-GTTCCSCCEEECCSCCCSCC-GGGTTCTTCCEEECTTSCCCCC--GG-GTTCTTCCE
T ss_pred CCCCEEEccCCc----CCCChh-HccCCCCCEEEccCCcCCCc-hhhcCCCCCCEEECCCCCCCCc--hh-hcCCCCCCE
Confidence 466666666111 112222 45566666666666655332 2344466666666666653321 11 345566666
Q ss_pred EEeeecccc--ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585 175 LEFVRYNNL--VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 175 L~l~~c~~~--~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
|+++++... ..+..+++|+.|+++++.+++-. . ...+++|++|+++++
T Consensus 134 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--~-l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLT--P-LANLSKLTTLKADDN 183 (308)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSS
T ss_pred EECCCCccCcCccccCCCCccEEEccCCcCCCCh--h-hcCCCCCCEEECCCC
Confidence 666554321 11222455555555554443311 1 334455555555544
No 22
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.78 E-value=4.7e-08 Score=86.10 Aligned_cols=158 Identities=16% Similarity=0.094 Sum_probs=107.7
Q ss_pred CCceEEEEEec-cC-----CCcccCCCcchhccCCccEEEEecee-eccCCcCcccCCCccEEEcceeeeChHHHHHHHh
Q 042585 95 RNVEELEVEHL-RR-----LDTWNSLPQMVLRSKSIKVLTLQNYK-LESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFA 167 (286)
Q Consensus 95 ~~l~~L~l~~~-~~-----~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~ 167 (286)
++++.|.+... .. +.....+...+..+++|++|.|.++. +.. +. ...++|++|.|..+.+++.++..+..
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l--~~-~~~~~L~~L~L~~~~l~~~~l~~l~~ 215 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI--GK-KPRPNLKSLEIISGGLPDSVVEDILG 215 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC--CS-CBCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee--cc-ccCCCCcEEEEecCCCChHHHHHHHH
Confidence 68999988621 10 00112355566788999999999873 222 22 34899999999988899999888775
Q ss_pred -cCCCcceEEeeeccc-------c----ceee--cccCCceEEecCcccChhhHHHHHh--cCCCccEEecccccCcccc
Q 042585 168 -QSPLLQHLEFVRYNN-------L----VNVS--SCKNLKHLDLCDGSYTDEWLNSQIS--GLPLLEQLHISLCNNIESI 231 (286)
Q Consensus 168 -~cp~Le~L~l~~c~~-------~----~~~~--~~~~L~~L~l~~~~~~~~~l~~~~~--~~p~L~~L~l~~c~~~~~~ 231 (286)
.+|+|+.|+|..+.. . ..+. .+|+|++|++.+|.+++.....+.. .+|+|++|+++.+. +++.
T Consensus 216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~ 294 (362)
T 2ra8_A 216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDE 294 (362)
T ss_dssp SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHH
T ss_pred ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChH
Confidence 699999999963211 1 1122 1799999999998887654434432 57899999997753 4443
Q ss_pred cc--------ccccccEEEeecccCCcccccccc
Q 042585 232 TI--------SSLRLKKLIINTCESNTIFSFGSI 257 (286)
Q Consensus 232 ~i--------~~p~L~~L~ls~c~~~~~~~~~~~ 257 (286)
+. ..++|+.|++++|. +++.....+
T Consensus 295 G~~~L~~~L~~l~~L~~L~L~~n~-i~d~~~~~l 327 (362)
T 2ra8_A 295 GARLLLDHVDKIKHLKFINMKYNY-LSDEMKKEL 327 (362)
T ss_dssp HHHHHHTTHHHHTTCSEEECCSBB-CCHHHHHHH
T ss_pred HHHHHHhhcccCCcceEEECCCCc-CCHHHHHHH
Confidence 21 13789999999884 555444333
No 23
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.76 E-value=5.2e-09 Score=94.79 Aligned_cols=154 Identities=15% Similarity=0.158 Sum_probs=102.8
Q ss_pred hCCceEEEEEecc-CCCcccCCCcchhccCCccEEEEeceeecc--CCcCcccCC----CccEEEcceeeeChHH---HH
Q 042585 94 ERNVEELEVEHLR-RLDTWNSLPQMVLRSKSIKVLTLQNYKLES--LGNDDVKLL----SLRKLHLSDVYADDQV---MN 163 (286)
Q Consensus 94 ~~~l~~L~l~~~~-~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--~~~~~~~~~----~L~~L~L~~~~~~~~~---l~ 163 (286)
.+++++++++.+. .+.....++..+..+++|++|+|+++.+.. .......++ +|++|+|+++.+++.+ +.
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~ 106 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS 106 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHH
Confidence 4789999998222 111112455667778999999999987722 101122344 7999999999877644 44
Q ss_pred HHHhcCCCcceEEeeeccccc----eeec-----ccCCceEEecCcccChhhH---HHHHhcCCCccEEecccccCcccc
Q 042585 164 NLFAQSPLLQHLEFVRYNNLV----NVSS-----CKNLKHLDLCDGSYTDEWL---NSQISGLPLLEQLHISLCNNIESI 231 (286)
Q Consensus 164 ~l~~~cp~Le~L~l~~c~~~~----~~~~-----~~~L~~L~l~~~~~~~~~l---~~~~~~~p~L~~L~l~~c~~~~~~ 231 (286)
..+..+|+|++|+++++.... .+.. .++|++|++.+|.+++... ......+++|++|++++|. +++.
T Consensus 107 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~ 185 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEA 185 (461)
T ss_dssp HHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHH
T ss_pred HHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchH
Confidence 455779999999999775321 1111 3579999999888877543 3444568999999999976 3332
Q ss_pred ccc---------cccccEEEeecccC
Q 042585 232 TIS---------SLRLKKLIINTCES 248 (286)
Q Consensus 232 ~i~---------~p~L~~L~ls~c~~ 248 (286)
+.. .++|+.|++++|..
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l 211 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGV 211 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCC
Confidence 211 35899999999843
No 24
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.75 E-value=4.1e-08 Score=85.58 Aligned_cols=119 Identities=19% Similarity=0.215 Sum_probs=67.2
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH 174 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 174 (286)
+++++|+++... -..++. +..+++|++|++++|.+... +....+++|++|+|+++.+++... ...+++|+.
T Consensus 66 ~~L~~L~l~~n~----i~~~~~-~~~l~~L~~L~L~~n~i~~~-~~~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~ 136 (347)
T 4fmz_A 66 TNLEYLNLNGNQ----ITDISP-LSNLVKLTNLYIGTNKITDI-SALQNLTNLRELYLNEDNISDISP---LANLTKMYS 136 (347)
T ss_dssp TTCCEEECCSSC----CCCCGG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCSEEECTTSCCCCCGG---GTTCTTCCE
T ss_pred CCccEEEccCCc----cccchh-hhcCCcCCEEEccCCcccCc-hHHcCCCcCCEEECcCCcccCchh---hccCCceeE
Confidence 567777777211 112333 56677777777777766442 345567777777777777332211 456777777
Q ss_pred EEeeeccccce---eecccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585 175 LEFVRYNNLVN---VSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 175 L~l~~c~~~~~---~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
|++++|..... +..+++|++|++.++.+.+.. ....+++|++|++++|
T Consensus 137 L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT---PIANLTDLYSLSLNYN 187 (347)
T ss_dssp EECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECTTS
T ss_pred EECCCCCCcccccchhhCCCCcEEEecCCCcCCch---hhccCCCCCEEEccCC
Confidence 77776643322 222566666666655444321 1345566666666554
No 25
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.74 E-value=4.7e-08 Score=83.50 Aligned_cols=75 Identities=23% Similarity=0.247 Sum_probs=32.5
Q ss_pred cCCCcceEEeeecccc--ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc-c-ccccccEEEe
Q 042585 168 QSPLLQHLEFVRYNNL--VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT-I-SSLRLKKLII 243 (286)
Q Consensus 168 ~cp~Le~L~l~~c~~~--~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~-i-~~p~L~~L~l 243 (286)
.+++|+.|+++++... ..+..+++|+.|+++++.+++-. . ...+++|++|++++|. ++.+. + ..++|+.|++
T Consensus 132 ~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~L~L~~N~-i~~l~~l~~l~~L~~L~l 207 (291)
T 1h6t_A 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV--P-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLEL 207 (291)
T ss_dssp GCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEE
T ss_pred CCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccch--h-hcCCCccCEEECCCCc-CCCChhhccCCCCCEEEC
Confidence 3444555555443211 11222455555555554443321 1 3445555555555542 11111 1 1356666666
Q ss_pred ecc
Q 042585 244 NTC 246 (286)
Q Consensus 244 s~c 246 (286)
+++
T Consensus 208 ~~n 210 (291)
T 1h6t_A 208 FSQ 210 (291)
T ss_dssp EEE
T ss_pred cCC
Confidence 654
No 26
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.74 E-value=2.3e-08 Score=86.24 Aligned_cols=150 Identities=15% Similarity=0.139 Sum_probs=91.5
Q ss_pred hCCceEEEEEeccCCCcccCCCcch--hccCCccEEEEeceeeccCCcCcccC-----CCccEEEcceeeeChHHHHHHH
Q 042585 94 ERNVEELEVEHLRRLDTWNSLPQMV--LRSKSIKVLTLQNYKLESLGNDDVKL-----LSLRKLHLSDVYADDQVMNNLF 166 (286)
Q Consensus 94 ~~~l~~L~l~~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~~~~~~~~~-----~~L~~L~L~~~~~~~~~l~~l~ 166 (286)
-.++++|+++... -...+|..+ ...++|++|+|+++.+.........+ ++|++|+|+++.++..... .+
T Consensus 94 l~~L~~L~L~~n~---l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~-~~ 169 (312)
T 1wwl_A 94 ISGLQELTLENLE---VTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE-QV 169 (312)
T ss_dssp TSCCCEEEEEEEB---CBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTT-TC
T ss_pred cCCccEEEccCCc---ccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHH-Hh
Confidence 3688888888322 122344443 56788888888888774431222233 7888888888874332111 23
Q ss_pred hcCCCcceEEeeeccccc------ee--ecccCCceEEecCcccCh--hhHHHHHhcCCCccEEecccccCcccc--c--
Q 042585 167 AQSPLLQHLEFVRYNNLV------NV--SSCKNLKHLDLCDGSYTD--EWLNSQISGLPLLEQLHISLCNNIESI--T-- 232 (286)
Q Consensus 167 ~~cp~Le~L~l~~c~~~~------~~--~~~~~L~~L~l~~~~~~~--~~l~~~~~~~p~L~~L~l~~c~~~~~~--~-- 232 (286)
..+++|+.|+++++.... .+ ..+++|++|+++++.++. .....+...+++|++|+++++.--... .
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 249 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh
Confidence 467888888888765221 12 337888888888877663 222244457788888888886432211 1
Q ss_pred cccccccEEEeeccc
Q 042585 233 ISSLRLKKLIINTCE 247 (286)
Q Consensus 233 i~~p~L~~L~ls~c~ 247 (286)
...++|+.|+++++.
T Consensus 250 ~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTG 264 (312)
T ss_dssp CCCTTCCEEECTTSC
T ss_pred hhcCCCCEEECCCCc
Confidence 113678888887764
No 27
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.73 E-value=4.8e-08 Score=84.07 Aligned_cols=142 Identities=18% Similarity=0.152 Sum_probs=104.0
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH 174 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 174 (286)
.++++|+++... -..+ ..+..+++|++|++++|.+... +....+++|++|+|+++.+++..- +..+++|+.
T Consensus 85 ~~L~~L~L~~n~----l~~~-~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~ 155 (308)
T 1h6u_A 85 TKITELELSGNP----LKNV-SAIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNISP---LAGLTNLQY 155 (308)
T ss_dssp CSCCEEECCSCC----CSCC-GGGTTCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCE
T ss_pred CCCCEEEccCCc----CCCc-hhhcCCCCCCEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCcCcc---ccCCCCccE
Confidence 689999998221 1122 3577889999999999988553 346679999999999998543221 668999999
Q ss_pred EEeeecccc--ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccccc-cccccEEEeecccC
Q 042585 175 LEFVRYNNL--VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITIS-SLRLKKLIINTCES 248 (286)
Q Consensus 175 L~l~~c~~~--~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~-~p~L~~L~ls~c~~ 248 (286)
|++++|... ..+..+++|+.|+++++.+++-. ....+++|++|++++|.--....+. .++|+.|+++++.-
T Consensus 156 L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 156 LSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS---PLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp EECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred EEccCCcCCCChhhcCCCCCCEEECCCCccCcCh---hhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence 999987432 22334899999999988776532 1578999999999998533222232 58999999998753
No 28
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.72 E-value=2.2e-08 Score=94.16 Aligned_cols=123 Identities=23% Similarity=0.242 Sum_probs=73.5
Q ss_pred hhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc--ceeecccCCceE
Q 042585 118 VLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL--VNVSSCKNLKHL 195 (286)
Q Consensus 118 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~~~~L~~L 195 (286)
+..+++|+.|+|++|.+... +....+++|+.|+|+++.+.+- .. +..+|+|+.|+|++|... ..+..+++|+.|
T Consensus 83 l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L 158 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNGISDI--NG-LVHLPQLESLYLGNNKITDITVLSRLTKLDTL 158 (605)
T ss_dssp GGGCTTCCEEECCSSCCCCC-TTSTTCTTCCEEECTTSCCCCC--GG-GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEE
T ss_pred hccCCCCCEEECcCCCCCCC-hhhccCCCCCEEEecCCCCCCC--cc-ccCCCccCEEECCCCccCCchhhcccCCCCEE
Confidence 55667777777777666432 3445577777777777764331 11 456777777777766432 222237777777
Q ss_pred EecCcccChhhHHHHHhcCCCccEEecccccCcccc-cc-ccccccEEEeecccC
Q 042585 196 DLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESI-TI-SSLRLKKLIINTCES 248 (286)
Q Consensus 196 ~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~-~i-~~p~L~~L~ls~c~~ 248 (286)
++++|.+.+-. . ...+++|+.|++++|.- ..+ .+ ..++|+.|++++|..
T Consensus 159 ~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~i-~~l~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 159 SLEDNQISDIV--P-LAGLTKLQNLYLSKNHI-SDLRALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp ECCSSCCCCCG--G-GTTCTTCCEEECCSSCC-CBCGGGTTCTTCSEEECCSEEE
T ss_pred ECcCCcCCCch--h-hccCCCCCEEECcCCCC-CCChHHccCCCCCEEEccCCcC
Confidence 77777655431 1 56677777777777632 222 11 136778888777643
No 29
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.72 E-value=3.2e-09 Score=94.02 Aligned_cols=162 Identities=14% Similarity=0.100 Sum_probs=108.9
Q ss_pred HHHHHhCCceEEEEE-eccCCCcccCCCcchh-ccCCccEEEEeceeecc--CCcCcccCCCccEEEcceeeeChHHHHH
Q 042585 89 ISYAIERNVEELEVE-HLRRLDTWNSLPQMVL-RSKSIKVLTLQNYKLES--LGNDDVKLLSLRKLHLSDVYADDQVMNN 164 (286)
Q Consensus 89 ~~~~~~~~l~~L~l~-~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~l~~ 164 (286)
+...+..++++++++ +.-.+.....+...+. .+++|++|+|++|.+.. .......+++|++|+|+++.+++.+...
T Consensus 66 l~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~ 145 (372)
T 3un9_A 66 FSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD 145 (372)
T ss_dssp HHHHHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred HHHHHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence 334446789999998 2211111122222222 23799999999998833 1122334778999999999998887776
Q ss_pred HHh----cCCCcceEEeeecccc----cee----ecccCCceEEecCcccChhhHHHH---HhcCCCccEEecccccCcc
Q 042585 165 LFA----QSPLLQHLEFVRYNNL----VNV----SSCKNLKHLDLCDGSYTDEWLNSQ---ISGLPLLEQLHISLCNNIE 229 (286)
Q Consensus 165 l~~----~cp~Le~L~l~~c~~~----~~~----~~~~~L~~L~l~~~~~~~~~l~~~---~~~~p~L~~L~l~~c~~~~ 229 (286)
+.. .+++|++|++++|... ..+ ...++|++|++++|.+++.+...+ ...+++|++|++++|. ++
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~ 224 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AG 224 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CC
T ss_pred HHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CC
Confidence 653 5789999999988542 112 227899999999998887654433 4567899999999984 33
Q ss_pred cccc--------ccccccEEEeecccCCccc
Q 042585 230 SITI--------SSLRLKKLIINTCESNTIF 252 (286)
Q Consensus 230 ~~~i--------~~p~L~~L~ls~c~~~~~~ 252 (286)
+.+. ..+.|+.|+++++. ++..
T Consensus 225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~ 254 (372)
T 3un9_A 225 DTAALALARAAREHPSLELLHLYFNE-LSSE 254 (372)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECTTSS-CCHH
T ss_pred HHHHHHHHHHHHhCCCCCEEeccCCC-CCHH
Confidence 3221 24789999999885 4443
No 30
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.71 E-value=4.7e-08 Score=83.49 Aligned_cols=142 Identities=16% Similarity=0.176 Sum_probs=95.0
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH 174 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 174 (286)
.+++++++.... -..++ .+..+++|+.|+++++.+....+ ...+++|++|+|+++.+++- .. +..+++|+.
T Consensus 46 ~~L~~L~l~~~~----i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~ 116 (291)
T 1h6t_A 46 NSIDQIIANNSD----IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDL--SS-LKDLKKLKS 116 (291)
T ss_dssp HTCCEEECTTSC----CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCE
T ss_pred CcccEEEccCCC----cccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCC--hh-hccCCCCCE
Confidence 467777776211 11233 35678889999998888755323 66788899999988885442 22 567888999
Q ss_pred EEeeecccc--ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccccc-cccccEEEeecccC
Q 042585 175 LEFVRYNNL--VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITIS-SLRLKKLIINTCES 248 (286)
Q Consensus 175 L~l~~c~~~--~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~-~p~L~~L~ls~c~~ 248 (286)
|+++++... ..+..+++|+.|+++++.+++- .....+++|++|++++|.--....+. .++|+.|+++++.-
T Consensus 117 L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 117 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp EECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCCChhhcCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcC
Confidence 998876432 2233388899999988776653 34567888999998887422211222 47888888888743
No 31
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.70 E-value=3.9e-08 Score=92.45 Aligned_cols=101 Identities=20% Similarity=0.169 Sum_probs=42.4
Q ss_pred hhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc--ceeecccCCceE
Q 042585 118 VLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL--VNVSSCKNLKHL 195 (286)
Q Consensus 118 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~~~~L~~L 195 (286)
+..+++|+.|+|++|.+... +....+++|+.|+|+++.+++- . -+..+++|+.|++++|... ..+..+++|+.|
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L 136 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 136 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEE
T ss_pred HccCCCCCEEEeeCCCCCCC-hhhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEEEecCCCCCCCccccCCCccCEE
Confidence 33445555555555444322 1133455555555555442221 1 1233455555555443221 112224555555
Q ss_pred EecCcccChhhHHHHHhcCCCccEEecccc
Q 042585 196 DLCDGSYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 196 ~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
+++++.+++- .....+++|+.|++++|
T Consensus 137 ~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N 163 (605)
T 1m9s_A 137 YLGNNKITDI---TVLSRLTKLDTLSLEDN 163 (605)
T ss_dssp ECCSSCCCCC---GGGGSCTTCSEEECCSS
T ss_pred ECCCCccCCc---hhhcccCCCCEEECcCC
Confidence 5554443321 22334455555555544
No 32
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.69 E-value=7.7e-09 Score=93.67 Aligned_cols=130 Identities=19% Similarity=0.121 Sum_probs=70.6
Q ss_pred CceEEEEE-eccCCCcccCCCcchhccCCccEEEEeceeeccC------CcCcccCCCccEEEcceeeeChHHHHH---H
Q 042585 96 NVEELEVE-HLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESL------GNDDVKLLSLRKLHLSDVYADDQVMNN---L 165 (286)
Q Consensus 96 ~l~~L~l~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~------~~~~~~~~~L~~L~L~~~~~~~~~l~~---l 165 (286)
++++|+++ +.-.......++..+..+++|++|++++|.+... ......+++|++|+|++|.+++.++.. .
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 67777776 2110111112455556778888888887766220 011124677888888887776665333 3
Q ss_pred HhcCCCcceEEeeeccccc----eeec-----ccCCceEEecCcccChhhH---HHHHhcCCCccEEecccc
Q 042585 166 FAQSPLLQHLEFVRYNNLV----NVSS-----CKNLKHLDLCDGSYTDEWL---NSQISGLPLLEQLHISLC 225 (286)
Q Consensus 166 ~~~cp~Le~L~l~~c~~~~----~~~~-----~~~L~~L~l~~~~~~~~~l---~~~~~~~p~L~~L~l~~c 225 (286)
+..+|+|++|+++++.... .+.. .++|++|++.+|.+++.+. ......+++|++|++++|
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence 3457778888777654310 1111 2466666666665554432 222344566666666665
No 33
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.65 E-value=3.5e-08 Score=83.35 Aligned_cols=146 Identities=18% Similarity=0.155 Sum_probs=74.6
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcC-cccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGND-DVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ 173 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 173 (286)
.++++|+++... -..+ ..+..+++|++|++++|.+....+. ...+++|++|+|+++.++... ...+..+++|+
T Consensus 63 ~~L~~L~l~~n~----l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~ 136 (272)
T 3rfs_A 63 PNVRYLALGGNK----LHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP-DGVFDKLTNLT 136 (272)
T ss_dssp TTCCEEECTTSC----CCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCC
T ss_pred CCCcEEECCCCC----CCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccC-HHHhccCCCCC
Confidence 456666666111 0111 2455666777777777666432222 345677777777766633211 11234566777
Q ss_pred eEEeeeccccc----eeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCcccc--cc-ccccccEEEeecc
Q 042585 174 HLEFVRYNNLV----NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESI--TI-SSLRLKKLIINTC 246 (286)
Q Consensus 174 ~L~l~~c~~~~----~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~--~i-~~p~L~~L~ls~c 246 (286)
.|+++++.... .+..+++|+.|++.++.++.-. ......+++|++|++++|.--... .+ ..++|+.|+++++
T Consensus 137 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCccCccCHHHhccCccCCEEECCCCCcCccC-HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 77776653221 1222667777777766554311 022345677777777665321111 11 2366777777665
Q ss_pred c
Q 042585 247 E 247 (286)
Q Consensus 247 ~ 247 (286)
+
T Consensus 216 ~ 216 (272)
T 3rfs_A 216 P 216 (272)
T ss_dssp C
T ss_pred C
Confidence 4
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.65 E-value=1.2e-07 Score=86.15 Aligned_cols=100 Identities=23% Similarity=0.190 Sum_probs=46.3
Q ss_pred hccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc--ceeecccCCceEE
Q 042585 119 LRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL--VNVSSCKNLKHLD 196 (286)
Q Consensus 119 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~~~~L~~L~ 196 (286)
..+++|+.|++++|.+... +....+++|++|+++++.++... . ...+++|+.|++++|... ..+..+++|+.|+
T Consensus 240 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 315 (466)
T 1o6v_A 240 ASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQISNIS--P-LAGLTALTNLELNENQLEDISPISNLKNLTYLT 315 (466)
T ss_dssp GGCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCCCCG--G-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEE
T ss_pred hcCCCCCEEECCCCccccc-hhhhcCCCCCEEECCCCccCccc--c-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEE
Confidence 3445555555555544322 11334555555555555522211 1 344555555555544321 1122255566666
Q ss_pred ecCcccChhhHHHHHhcCCCccEEecccc
Q 042585 197 LCDGSYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 197 l~~~~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
++++.+++.. . ...+++|++|++++|
T Consensus 316 L~~n~l~~~~--~-~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 316 LYFNNISDIS--P-VSSLTKLQRLFFYNN 341 (466)
T ss_dssp CCSSCCSCCG--G-GGGCTTCCEEECCSS
T ss_pred CcCCcCCCch--h-hccCccCCEeECCCC
Confidence 6555444321 1 345555555555554
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.65 E-value=5.4e-09 Score=89.68 Aligned_cols=168 Identities=17% Similarity=0.145 Sum_probs=98.2
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCC--cCcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLG--NDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL 172 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 172 (286)
.++++|+++... -..+|..+..+++|++|+++++.+.... .....+++|++|+++++.++... ...+..+++|
T Consensus 78 ~~L~~L~Ls~n~----i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L 152 (306)
T 2z66_A 78 TSLKYLDLSFNG----VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSL 152 (306)
T ss_dssp SCCCEEECCSCS----EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS-TTTTTTCTTC
T ss_pred cccCEEECCCCc----cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc-hhhcccCcCC
Confidence 456666665111 1234455566777778877777664321 23445778888888877632211 1224567888
Q ss_pred ceEEeeeccccc-----eeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCcc--cccc-ccccccEEEee
Q 042585 173 QHLEFVRYNNLV-----NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIE--SITI-SSLRLKKLIIN 244 (286)
Q Consensus 173 e~L~l~~c~~~~-----~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~--~~~i-~~p~L~~L~ls 244 (286)
+.|+++++.... .+..+++|+.|+++++.++.... .....+++|++|+++++.-.. ...+ ..++|+.|+++
T Consensus 153 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231 (306)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred CEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH-HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC
Confidence 888888764322 12227888999988876654211 234577889999998874322 1122 24789999999
Q ss_pred cccCCccc--ccccc--ceeeeccC-CCC
Q 042585 245 TCESNTIF--SFGSI--ALFSLALR-KPL 268 (286)
Q Consensus 245 ~c~~~~~~--~~~~~--~l~s~~~~-~~~ 268 (286)
++...+.. .+..+ .+..+.+. .|+
T Consensus 232 ~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 232 LNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp TSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred CCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 88543322 23332 34555554 355
No 36
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.65 E-value=2e-08 Score=86.15 Aligned_cols=153 Identities=16% Similarity=0.110 Sum_probs=104.0
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCC-cCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLG-NDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ 173 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 173 (286)
.++++|+++... .........+..+++|++|+++++.+.... .....+++|++|+|+++.+++..+...+..+++|+
T Consensus 101 ~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 178 (306)
T 2z66_A 101 EQLEHLDFQHSN--LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178 (306)
T ss_dssp TTCCEEECTTSE--EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred CCCCEEECCCCc--ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence 578888887111 011111235667899999999998874322 23456899999999999865533344466799999
Q ss_pred eEEeeeccccc----eeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCcccc--ccc-c-ccccEEEeec
Q 042585 174 HLEFVRYNNLV----NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESI--TIS-S-LRLKKLIINT 245 (286)
Q Consensus 174 ~L~l~~c~~~~----~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~--~i~-~-p~L~~L~ls~ 245 (286)
.|+++++.... .+..+++|+.|+++++.++.... .....+++|++|+++++.-.... .+. . ++|+.|++++
T Consensus 179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccC
Confidence 99999875432 22338999999999887654211 22467899999999998533221 122 2 4899999998
Q ss_pred ccCCc
Q 042585 246 CESNT 250 (286)
Q Consensus 246 c~~~~ 250 (286)
++...
T Consensus 258 N~~~~ 262 (306)
T 2z66_A 258 NDFAC 262 (306)
T ss_dssp CCEEC
T ss_pred CCeec
Confidence 76443
No 37
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.64 E-value=4.1e-08 Score=82.75 Aligned_cols=146 Identities=20% Similarity=0.214 Sum_probs=93.9
Q ss_pred CCceEEEEEeccCCCcccCCCc-chhccCCccEEEEeceeeccCCcC-cccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQ-MVLRSKSIKVLTLQNYKLESLGND-DVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL 172 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 172 (286)
.++++|+++... -..++. .+..+++|++|+++++.+....+. ...+++|++|+|.++.++.-.. ..+..+++|
T Consensus 37 ~~l~~L~l~~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L 111 (270)
T 2o6q_A 37 ADTKKLDLQSNK----LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI-GVFDQLVNL 111 (270)
T ss_dssp TTCSEEECCSSC----CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCSSC
T ss_pred CCCCEEECcCCC----CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH-hHcccccCC
Confidence 467888887221 123333 456788999999988877543233 3468899999998887432111 234568889
Q ss_pred ceEEeeecccc----ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc---c-ccccccEEEee
Q 042585 173 QHLEFVRYNNL----VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT---I-SSLRLKKLIIN 244 (286)
Q Consensus 173 e~L~l~~c~~~----~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i-~~p~L~~L~ls 244 (286)
+.|+++++... ..+..+++|++|+++++.++.-.. .....+++|++|+++++.- +.+. + ..++|+.|+++
T Consensus 112 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK-GVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECC
T ss_pred CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCH-hHccCCcccceeEecCCcC-cEeChhHhccCCCcCEEECC
Confidence 99999876432 113337889999998876553211 2245678899999888632 2221 2 24788888888
Q ss_pred ccc
Q 042585 245 TCE 247 (286)
Q Consensus 245 ~c~ 247 (286)
++.
T Consensus 190 ~N~ 192 (270)
T 2o6q_A 190 NNQ 192 (270)
T ss_dssp SSC
T ss_pred CCc
Confidence 874
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.63 E-value=8.8e-08 Score=87.26 Aligned_cols=149 Identities=21% Similarity=0.135 Sum_probs=90.0
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ 173 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 173 (286)
.++++|+++... -....|..+..+++|++|+|+++.+....+ ...++++|++|+|+++.+.... ...+..+++|+
T Consensus 56 ~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~ 131 (477)
T 2id5_A 56 PHLEELELNENI---VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILL-DYMFQDLYNLK 131 (477)
T ss_dssp TTCCEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCC
T ss_pred CCCCEEECCCCc---cCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCC-hhHccccccCC
Confidence 578888887211 112224556678889999998887754322 2356888999999888743211 11245688888
Q ss_pred eEEeeecccc----ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCcc--cccc-ccccccEEEeecc
Q 042585 174 HLEFVRYNNL----VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIE--SITI-SSLRLKKLIINTC 246 (286)
Q Consensus 174 ~L~l~~c~~~----~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~--~~~i-~~p~L~~L~ls~c 246 (286)
.|+++++... ..+..+++|+.|++.++.++.-.. .....+++|+.|++.++..-. ...+ ..++|+.|++++|
T Consensus 132 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT-EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp EEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH-HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred EEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh-hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence 8888876432 223347888888888776554221 345677788888777753211 1111 1245555555555
Q ss_pred cC
Q 042585 247 ES 248 (286)
Q Consensus 247 ~~ 248 (286)
..
T Consensus 211 ~~ 212 (477)
T 2id5_A 211 PY 212 (477)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 39
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.62 E-value=3.7e-08 Score=83.14 Aligned_cols=147 Identities=18% Similarity=0.162 Sum_probs=103.7
Q ss_pred hCCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585 94 ERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ 173 (286)
Q Consensus 94 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 173 (286)
..+++++.+.... ..-...+..+++|++|+++++.+... +....+++|++|+|+++.++... ...+..+++|+
T Consensus 40 l~~L~~L~l~~~~-----i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~ 112 (272)
T 3rfs_A 40 LNSIDQIIANNSD-----IKSVQGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLK 112 (272)
T ss_dssp HTTCCEEECTTSC-----CCCCTTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCC
T ss_pred ccceeeeeeCCCC-----cccccccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccC-hhHhcCCcCCC
Confidence 3678888887211 11223467899999999999988553 45667999999999999854321 12346799999
Q ss_pred eEEeeeccccce----eecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc---c-ccccccEEEeec
Q 042585 174 HLEFVRYNNLVN----VSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT---I-SSLRLKKLIINT 245 (286)
Q Consensus 174 ~L~l~~c~~~~~----~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i-~~p~L~~L~ls~ 245 (286)
.|+++++..... +..+++|+.|++.++.++.-. ......+++|++|++++|.- +.+. + ..++|+.|++++
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLP-KGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccC-HHHhccCccCCEEECCCCCc-CccCHHHhcCCccCCEEECCC
Confidence 999998754311 334899999999988766321 13346789999999999842 2222 2 248999999998
Q ss_pred ccCC
Q 042585 246 CESN 249 (286)
Q Consensus 246 c~~~ 249 (286)
+..-
T Consensus 191 N~l~ 194 (272)
T 3rfs_A 191 NQLK 194 (272)
T ss_dssp SCCS
T ss_pred CcCC
Confidence 8543
No 40
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.62 E-value=5.5e-08 Score=83.67 Aligned_cols=150 Identities=14% Similarity=0.122 Sum_probs=80.3
Q ss_pred hCCceEEEEEeccCCCcccCCCcch--hccCCccEEEEeceeeccCCc-----CcccCCCccEEEcceeeeChHHHHHHH
Q 042585 94 ERNVEELEVEHLRRLDTWNSLPQMV--LRSKSIKVLTLQNYKLESLGN-----DDVKLLSLRKLHLSDVYADDQVMNNLF 166 (286)
Q Consensus 94 ~~~l~~L~l~~~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~~~~~~-----~~~~~~~L~~L~L~~~~~~~~~l~~l~ 166 (286)
..++++|+++... .....|..+ ...++|+.|+|+++.+....+ ....+++|++|+|+++.++...- ..+
T Consensus 90 ~~~L~~L~l~~n~---l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~ 165 (310)
T 4glp_A 90 YSRLKELTLEDLK---ITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSC-EQV 165 (310)
T ss_dssp HSCCCEEEEESCC---CBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCT-TSC
T ss_pred cCceeEEEeeCCE---eccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhH-HHh
Confidence 4679999998222 112333333 556777777777776633111 11247777777777776422111 123
Q ss_pred hcCCCcceEEeeeccccc------ee--ecccCCceEEecCcccCh--hhHHHHHhcCCCccEEecccccCccc----cc
Q 042585 167 AQSPLLQHLEFVRYNNLV------NV--SSCKNLKHLDLCDGSYTD--EWLNSQISGLPLLEQLHISLCNNIES----IT 232 (286)
Q Consensus 167 ~~cp~Le~L~l~~c~~~~------~~--~~~~~L~~L~l~~~~~~~--~~l~~~~~~~p~L~~L~l~~c~~~~~----~~ 232 (286)
..+++|+.|+++++.... .. ..+++|++|+++++.++. .....+...+++|++|+++++.--.. +.
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~ 245 (310)
T 4glp_A 166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAP 245 (310)
T ss_dssp CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCS
T ss_pred ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHH
Confidence 456777777777664221 11 226677777777766642 11112345667777777777532211 11
Q ss_pred cc--cccccEEEeeccc
Q 042585 233 IS--SLRLKKLIINTCE 247 (286)
Q Consensus 233 i~--~p~L~~L~ls~c~ 247 (286)
-. .++|+.|+++++.
T Consensus 246 ~~~~~~~L~~L~Ls~N~ 262 (310)
T 4glp_A 246 RCMWSSALNSLNLSFAG 262 (310)
T ss_dssp SCCCCTTCCCEECCSSC
T ss_pred hccCcCcCCEEECCCCC
Confidence 11 1466666666653
No 41
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.61 E-value=1.2e-07 Score=86.22 Aligned_cols=143 Identities=17% Similarity=0.179 Sum_probs=102.7
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH 174 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 174 (286)
.++++|+++... -..++. +..+++|+.|+++++.+... +....+++|++|+|+++.+++..- ...+|+|+.
T Consensus 243 ~~L~~L~l~~n~----l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~ 313 (466)
T 1o6v_A 243 TNLTDLDLANNQ----ISNLAP-LSGLTKLTELKLGANQISNI-SPLAGLTALTNLELNENQLEDISP---ISNLKNLTY 313 (466)
T ss_dssp TTCSEEECCSSC----CCCCGG-GTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCSCCGG---GGGCTTCSE
T ss_pred CCCCEEECCCCc----cccchh-hhcCCCCCEEECCCCccCcc-ccccCCCccCeEEcCCCcccCchh---hcCCCCCCE
Confidence 567777776211 112222 66889999999999988553 336679999999999998543221 568999999
Q ss_pred EEeeecccc--ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccccc-cccccEEEeecccCC
Q 042585 175 LEFVRYNNL--VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITIS-SLRLKKLIINTCESN 249 (286)
Q Consensus 175 L~l~~c~~~--~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~-~p~L~~L~ls~c~~~ 249 (286)
|++++|... ..+..+++|+.|++.++.+++- .....+++|+.|++++|.......+. .++|+.|++++|...
T Consensus 314 L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 314 LTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWT 388 (466)
T ss_dssp EECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEE
T ss_pred EECcCCcCCCchhhccCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCccc
Confidence 999988543 2233499999999999877653 34568999999999998643333332 489999999988543
No 42
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.60 E-value=4.1e-08 Score=94.94 Aligned_cols=149 Identities=20% Similarity=0.231 Sum_probs=80.5
Q ss_pred CCceEEEEEeccCCCcccCCCc--chhccCCccEEEEeceeeccCCcC--cccCCCccEEEcceeeeChHHHHH--HHhc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQ--MVLRSKSIKVLTLQNYKLESLGND--DVKLLSLRKLHLSDVYADDQVMNN--LFAQ 168 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~--l~~~ 168 (286)
.++++|+++... ....+|. .+..+++|++|+|++|.+....+. ...+++|++|+|+++.++...... ....
T Consensus 100 ~~L~~L~Ls~n~---l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 176 (768)
T 3rgz_A 100 ASLTSLDLSRNS---LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG 176 (768)
T ss_dssp TTCCEEECCSSE---EEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTC
T ss_pred CCCCEEECCCCc---CCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhcc
Confidence 467777777211 1123444 677888889998888877331122 246888888888888743322211 2455
Q ss_pred CCCcceEEeeeccccc-------------------------eeecccCCceEEecCcccChhhHHHHHhcCCCccEEecc
Q 042585 169 SPLLQHLEFVRYNNLV-------------------------NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHIS 223 (286)
Q Consensus 169 cp~Le~L~l~~c~~~~-------------------------~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~ 223 (286)
|++|++|+++++.... .+..+++|++|++.++.++... ......+++|++|+++
T Consensus 177 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 177 CGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNIS 255 (768)
T ss_dssp CTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCH-HHHTTTCSSCCEEECC
T ss_pred CCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcc-cHHHhcCCCCCEEECC
Confidence 6666666665543211 1112455555555555444321 1333456666666666
Q ss_pred cccCccccc-cccccccEEEeeccc
Q 042585 224 LCNNIESIT-ISSLRLKKLIINTCE 247 (286)
Q Consensus 224 ~c~~~~~~~-i~~p~L~~L~ls~c~ 247 (286)
+|.....+. ...++|+.|++++|.
T Consensus 256 ~n~l~~~~~~~~l~~L~~L~L~~n~ 280 (768)
T 3rgz_A 256 SNQFVGPIPPLPLKSLQYLSLAENK 280 (768)
T ss_dssp SSCCEESCCCCCCTTCCEEECCSSE
T ss_pred CCcccCccCccccCCCCEEECcCCc
Confidence 654322211 123567777776664
No 43
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.59 E-value=4.9e-08 Score=82.83 Aligned_cols=149 Identities=19% Similarity=0.082 Sum_probs=85.7
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEecee-eccC-CcCcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYK-LESL-GNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL 172 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 172 (286)
.++++|+++... -....|..+..+++|++|+++++. +... ......+++|++|+|.++.++... ...+..+++|
T Consensus 56 ~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L 131 (285)
T 1ozn_A 56 RNLTILWLHSNV---LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG-PGLFRGLAAL 131 (285)
T ss_dssp TTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTC
T ss_pred CCCCEEECCCCc---cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEEC-HhHhhCCcCC
Confidence 567777776211 111223455567788888888775 5332 223445778888888877643211 1224567788
Q ss_pred ceEEeeeccccc----eeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccc--ccc-ccccccEEEeec
Q 042585 173 QHLEFVRYNNLV----NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIES--ITI-SSLRLKKLIINT 245 (286)
Q Consensus 173 e~L~l~~c~~~~----~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~--~~i-~~p~L~~L~ls~ 245 (286)
+.|+++++.... .+..+++|+.|++.++.++.-.. .....+++|++|+++++.-... ..+ ..++|+.|++++
T Consensus 132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH-HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence 888887664321 12337788888887765543110 2234677888888877642211 111 236788888877
Q ss_pred ccC
Q 042585 246 CES 248 (286)
Q Consensus 246 c~~ 248 (286)
+..
T Consensus 211 n~l 213 (285)
T 1ozn_A 211 NNL 213 (285)
T ss_dssp SCC
T ss_pred CcC
Confidence 643
No 44
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.59 E-value=7.3e-08 Score=83.03 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=100.6
Q ss_pred hCCceEEEEEeccCCCcccCCCcchhcc-----CCccEEEEeceeeccCC-cCcccCCCccEEEcceeeeC-hHHHHHHH
Q 042585 94 ERNVEELEVEHLRRLDTWNSLPQMVLRS-----KSIKVLTLQNYKLESLG-NDDVKLLSLRKLHLSDVYAD-DQVMNNLF 166 (286)
Q Consensus 94 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~-----~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~-~~~l~~l~ 166 (286)
..++++|+++... -...|..+... ++|++|+|+++.+.... .....+++|++|+|+++.+. ...+..-.
T Consensus 120 l~~L~~L~Ls~N~----l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 120 GPDLNILNLRNVS----WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCCSEEEEESCB----CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred CCCccEEEccCCC----CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 3689999999222 11225555555 89999999999885532 34557999999999999843 33332222
Q ss_pred --hcCCCcceEEeeecccc--ceee-----cccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccccc-cc
Q 042585 167 --AQSPLLQHLEFVRYNNL--VNVS-----SCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITIS-SL 236 (286)
Q Consensus 167 --~~cp~Le~L~l~~c~~~--~~~~-----~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~-~p 236 (286)
..+++|++|+++++... ..+. .+++|+.|+++++.+++.........+++|++|+++++.- +.+.-. .+
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l-~~ip~~~~~ 274 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL-KQVPKGLPA 274 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC-SSCCSSCCS
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc-ChhhhhccC
Confidence 67899999999987543 1111 2589999999988776521002234568999999999742 233211 17
Q ss_pred cccEEEeecccC
Q 042585 237 RLKKLIINTCES 248 (286)
Q Consensus 237 ~L~~L~ls~c~~ 248 (286)
+|+.|+++++.-
T Consensus 275 ~L~~L~Ls~N~l 286 (312)
T 1wwl_A 275 KLSVLDLSYNRL 286 (312)
T ss_dssp EEEEEECCSSCC
T ss_pred CceEEECCCCCC
Confidence 899999998854
No 45
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.59 E-value=7.3e-08 Score=81.20 Aligned_cols=147 Identities=18% Similarity=0.154 Sum_probs=101.4
Q ss_pred CCceEEEEEeccCCCcccCCCcch-hccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMV-LRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL 172 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 172 (286)
.++++|++.... -..+|..+ ..+++|++|+++++.+....+ ....+++|++|+|+++.++...- ..+..+++|
T Consensus 61 ~~L~~L~l~~n~----l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L 135 (270)
T 2o6q_A 61 TKLRLLYLNDNK----LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP-RVFDSLTKL 135 (270)
T ss_dssp TTCCEEECCSSC----CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred CCCCEEECCCCc----cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCH-HHhCcCcCC
Confidence 588999998221 12455544 568999999999988855323 34569999999999988433211 224678999
Q ss_pred ceEEeeeccccc----eeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc---c-ccccccEEEee
Q 042585 173 QHLEFVRYNNLV----NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT---I-SSLRLKKLIIN 244 (286)
Q Consensus 173 e~L~l~~c~~~~----~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i-~~p~L~~L~ls 244 (286)
+.|+++++.... .+..+++|+.|++.++.++.-.. .....+++|++|+++++. ++.+. + ..++|+.|+++
T Consensus 136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~ 213 (270)
T 2o6q_A 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQ 213 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECC
T ss_pred CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh-hHhccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEec
Confidence 999999875331 13348999999999886654211 224578999999999973 33332 2 24789999998
Q ss_pred cccC
Q 042585 245 TCES 248 (286)
Q Consensus 245 ~c~~ 248 (286)
+++.
T Consensus 214 ~N~~ 217 (270)
T 2o6q_A 214 ENPW 217 (270)
T ss_dssp SSCB
T ss_pred CCCe
Confidence 7653
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.58 E-value=8e-09 Score=96.06 Aligned_cols=133 Identities=18% Similarity=0.192 Sum_probs=80.5
Q ss_pred cchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc----eeecccC
Q 042585 116 QMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV----NVSSCKN 191 (286)
Q Consensus 116 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~----~~~~~~~ 191 (286)
..+..+++|++|++++|.+....+....+++|++|++.++.++.......+..+++|+.|++++|.... .+..+++
T Consensus 367 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 446 (570)
T 2z63_A 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446 (570)
T ss_dssp HHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred ccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCc
Confidence 345566777777777766533222345677888888877763322111234567888888888765332 1223788
Q ss_pred CceEEecCcccChhhHHHHHhcCCCccEEecccccCcccc--cc-ccccccEEEeecccC
Q 042585 192 LKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESI--TI-SSLRLKKLIINTCES 248 (286)
Q Consensus 192 L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~--~i-~~p~L~~L~ls~c~~ 248 (286)
|+.|++.++.+++..+......+++|++|++++|.-.... .+ ..++|+.|++++|..
T Consensus 447 L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence 8888888776653222133456788888888887432211 11 247888888888743
No 47
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.58 E-value=6.4e-08 Score=80.65 Aligned_cols=149 Identities=15% Similarity=0.067 Sum_probs=93.5
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcC-cccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGND-DVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ 173 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 173 (286)
.+++.|++.... .....+..+..+++|++|+|+++.+....+. ...+++|++|+|+++.++... ...+..+++|+
T Consensus 35 ~~l~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~ 110 (251)
T 3m19_A 35 ADTEKLDLQSTG---LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP-LGVFDHLTQLD 110 (251)
T ss_dssp TTCCEEECTTSC---CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCC
T ss_pred CCCCEEEccCCC---cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccC-hhHhcccCCCC
Confidence 467788877211 1112233456778899999988887543232 456888999999888744221 12245688899
Q ss_pred eEEeeeccccc----eeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCc--ccccc-ccccccEEEeecc
Q 042585 174 HLEFVRYNNLV----NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNI--ESITI-SSLRLKKLIINTC 246 (286)
Q Consensus 174 ~L~l~~c~~~~----~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~--~~~~i-~~p~L~~L~ls~c 246 (286)
.|+++++.... .+..+++|+.|+++++.++.-.. .....+++|++|+++++.-- ....+ ..++|+.|+++++
T Consensus 111 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 189 (251)
T 3m19_A 111 KLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189 (251)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred EEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 99998764321 12337889999998876553210 23456788999999886422 11112 2478888888876
Q ss_pred cC
Q 042585 247 ES 248 (286)
Q Consensus 247 ~~ 248 (286)
..
T Consensus 190 ~~ 191 (251)
T 3m19_A 190 QF 191 (251)
T ss_dssp CB
T ss_pred ce
Confidence 54
No 48
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.58 E-value=8.8e-08 Score=80.58 Aligned_cols=142 Identities=15% Similarity=0.116 Sum_probs=99.4
Q ss_pred hCCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585 94 ERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ 173 (286)
Q Consensus 94 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 173 (286)
..++++|++.... -..++ .+..+++|+.|+++++.+....+ ...+++|++|+|+++.+++ +..+ .. ++|+
T Consensus 40 l~~L~~L~l~~n~----i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~--l~~~-~~-~~L~ 109 (263)
T 1xeu_A 40 LSGVQNFNGDNSN----IQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKN--LNGI-PS-ACLS 109 (263)
T ss_dssp HTTCSEEECTTSC----CCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSC--CTTC-CC-SSCC
T ss_pred cCcCcEEECcCCC----cccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCC--cCcc-cc-Cccc
Confidence 3678888887211 12344 56778999999999998855433 6679999999999998543 1121 22 8999
Q ss_pred eEEeeecccc--ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCcccccc-ccccccEEEeecccC
Q 042585 174 HLEFVRYNNL--VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITI-SSLRLKKLIINTCES 248 (286)
Q Consensus 174 ~L~l~~c~~~--~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i-~~p~L~~L~ls~c~~ 248 (286)
.|+++++... ..+..+++|+.|+++++.+++- .....+++|++|+++++.--..-.+ ..++|+.|+++++..
T Consensus 110 ~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~---~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 110 RLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI---VMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp EEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC---GGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEE
T ss_pred EEEccCCccCCChhhcCcccccEEECCCCcCCCC---hHHccCCCCCEEECCCCcCcchHHhccCCCCCEEeCCCCcc
Confidence 9999987433 2333489999999998877653 2356789999999999743222122 247899999988753
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.58 E-value=7.4e-08 Score=87.00 Aligned_cols=104 Identities=20% Similarity=0.233 Sum_probs=53.5
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ 173 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 173 (286)
.++++|+++... -....+..+..+++|++|+|+++.+....+ ....+++|++|+|+++.++.-. ...+..+++|+
T Consensus 88 ~~L~~L~Ls~n~---i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~ 163 (440)
T 3zyj_A 88 RHLEILQLSRNH---IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP-SYAFNRIPSLR 163 (440)
T ss_dssp SSCCEEECCSSC---CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEEC-TTTTTTCTTCC
T ss_pred CCCCEEECCCCc---CCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccC-HHHhhhCcccC
Confidence 467777776211 011112344566777777777776644222 2445777777777776633211 11234566666
Q ss_pred eEEeeecccccee-----ecccCCceEEecCccc
Q 042585 174 HLEFVRYNNLVNV-----SSCKNLKHLDLCDGSY 202 (286)
Q Consensus 174 ~L~l~~c~~~~~~-----~~~~~L~~L~l~~~~~ 202 (286)
.|++.+|.....+ ..+++|+.|+++++.+
T Consensus 164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp EEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred EeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence 6666654433221 1145555555554443
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.57 E-value=7.8e-08 Score=87.13 Aligned_cols=84 Identities=18% Similarity=0.141 Sum_probs=45.2
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcC-cccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGND-DVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ 173 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 173 (286)
.++++|+++... -....+..+..+++|++|+|+++.+....+. ...+++|++|+|+++.++.-. ...+..+|+|+
T Consensus 99 ~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~ 174 (452)
T 3zyi_A 99 HHLEVLQLGRNS---IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP-SYAFNRVPSLM 174 (452)
T ss_dssp TTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEEC-TTTTTTCTTCC
T ss_pred CCCCEEECCCCc---cCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeC-HhHHhcCCccc
Confidence 467777776211 1111223445667777777777766443222 345777777777777633211 11234466666
Q ss_pred eEEeeeccc
Q 042585 174 HLEFVRYNN 182 (286)
Q Consensus 174 ~L~l~~c~~ 182 (286)
.|++++|..
T Consensus 175 ~L~l~~~~~ 183 (452)
T 3zyi_A 175 RLDLGELKK 183 (452)
T ss_dssp EEECCCCTT
T ss_pred EEeCCCCCC
Confidence 666665443
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.57 E-value=8.7e-08 Score=82.63 Aligned_cols=106 Identities=18% Similarity=0.201 Sum_probs=50.4
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEec-eeec-cCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQN-YKLE-SLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL 172 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~-~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 172 (286)
..+++|++.... -.....+|..+..+++|++|++++ +.+. ..+.....+++|++|+|+++.++.. +...+..+++|
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTC
T ss_pred ceEEEEECCCCC-ccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCC
Confidence 356666666111 001114555666666666666663 3332 2222334566666666666653211 01113445666
Q ss_pred ceEEeeecccc----ceeecccCCceEEecCccc
Q 042585 173 QHLEFVRYNNL----VNVSSCKNLKHLDLCDGSY 202 (286)
Q Consensus 173 e~L~l~~c~~~----~~~~~~~~L~~L~l~~~~~ 202 (286)
+.|+++++... ..+..+++|++|++.++.+
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 161 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcc
Confidence 66666554322 1122255566666655543
No 52
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.56 E-value=7.6e-08 Score=82.78 Aligned_cols=154 Identities=16% Similarity=0.121 Sum_probs=92.4
Q ss_pred CCceEEEEEeccCCCcccCCC-cchhccCCccEEEEeceeeccCC-cCcccCCCccEEEcceee-eChHHHHH--HHhcC
Q 042585 95 RNVEELEVEHLRRLDTWNSLP-QMVLRSKSIKVLTLQNYKLESLG-NDDVKLLSLRKLHLSDVY-ADDQVMNN--LFAQS 169 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~-~~~~~l~~--l~~~c 169 (286)
.++++|+++...-......++ ..+..+++|++|+|+++.+.... .....+++|++|+|+++. .++..+.. ....+
T Consensus 117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 196 (310)
T 4glp_A 117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF 196 (310)
T ss_dssp BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS
T ss_pred CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcC
Confidence 578888888221000000011 22346788999999988874432 234468899999999887 44333322 12468
Q ss_pred CCcceEEeeecccc--ce-----eecccCCceEEecCcccChhhHHHHH--hcCCCccEEecccccCccccccc-ccccc
Q 042585 170 PLLQHLEFVRYNNL--VN-----VSSCKNLKHLDLCDGSYTDEWLNSQI--SGLPLLEQLHISLCNNIESITIS-SLRLK 239 (286)
Q Consensus 170 p~Le~L~l~~c~~~--~~-----~~~~~~L~~L~l~~~~~~~~~l~~~~--~~~p~L~~L~l~~c~~~~~~~i~-~p~L~ 239 (286)
|+|++|++++|... .. +..+++|++|+++++.+++.....+. ...++|++|+++++.-- .+.-. .++|+
T Consensus 197 ~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~L~ 275 (310)
T 4glp_A 197 PAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLPAKLR 275 (310)
T ss_dssp CCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCCSCCS
T ss_pred CCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhcCCCC
Confidence 88999999877542 11 12268899999988776542100111 12378999999886422 22111 26888
Q ss_pred EEEeecccCC
Q 042585 240 KLIINTCESN 249 (286)
Q Consensus 240 ~L~ls~c~~~ 249 (286)
.|+++++.--
T Consensus 276 ~L~Ls~N~l~ 285 (310)
T 4glp_A 276 VLDLSSNRLN 285 (310)
T ss_dssp CEECCSCCCC
T ss_pred EEECCCCcCC
Confidence 9998887543
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.56 E-value=1.1e-07 Score=80.74 Aligned_cols=150 Identities=19% Similarity=0.113 Sum_probs=102.9
Q ss_pred CCceEEEEEeccCCCcccCC-CcchhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585 95 RNVEELEVEHLRRLDTWNSL-PQMVLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL 172 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 172 (286)
.++++|+++... .-..+ |..+..+++|++|+++++.+....+ ....+++|++|+|+++.++.... ..+..+++|
T Consensus 80 ~~L~~L~l~~n~---~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L 155 (285)
T 1ozn_A 80 ALLEQLDLSDNA---QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD-DTFRDLGNL 155 (285)
T ss_dssp TTCCEEECCSCT---TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred cCCCEEeCCCCC---CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCH-hHhccCCCc
Confidence 678999998221 01223 4556678999999999988855322 34569999999999988443211 224568999
Q ss_pred ceEEeeeccccc----eeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc---c-ccccccEEEee
Q 042585 173 QHLEFVRYNNLV----NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT---I-SSLRLKKLIIN 244 (286)
Q Consensus 173 e~L~l~~c~~~~----~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i-~~p~L~~L~ls 244 (286)
+.|+++++.... .+..+++|+.|++.++.++.... .....+++|++|+++++.- +.+. + ..++|+.|+++
T Consensus 156 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNL-SALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCC-SCCCHHHHTTCTTCCEEECC
T ss_pred cEEECCCCcccccCHHHhcCccccCEEECCCCcccccCH-hHccCcccccEeeCCCCcC-CcCCHHHcccCcccCEEecc
Confidence 999999874331 13338999999999887664311 3345789999999999743 2222 2 25899999999
Q ss_pred cccCCc
Q 042585 245 TCESNT 250 (286)
Q Consensus 245 ~c~~~~ 250 (286)
+++...
T Consensus 234 ~N~~~c 239 (285)
T 1ozn_A 234 DNPWVC 239 (285)
T ss_dssp SSCEEC
T ss_pred CCCccC
Confidence 875543
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.55 E-value=8.6e-08 Score=82.67 Aligned_cols=104 Identities=10% Similarity=0.071 Sum_probs=58.7
Q ss_pred CCceEEEEE-eccCCCcccCCCcchhccCCccEEEEeceeec-cCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585 95 RNVEELEVE-HLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLE-SLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL 172 (286)
Q Consensus 95 ~~l~~L~l~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 172 (286)
.++++|+++ +.. ....+|..+..+++|++|+|+++.+. ........+++|++|+|+++.++.. +...+..+|+|
T Consensus 76 ~~L~~L~L~~~n~---l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L 151 (313)
T 1ogq_A 76 PYLNFLYIGGINN---LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNL 151 (313)
T ss_dssp TTCSEEEEEEETT---EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTC
T ss_pred CCCCeeeCCCCCc---ccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCC
Confidence 577777776 222 23355666777777888887777663 2223345577777777777763321 11123456777
Q ss_pred ceEEeeeccccce----eeccc-CCceEEecCccc
Q 042585 173 QHLEFVRYNNLVN----VSSCK-NLKHLDLCDGSY 202 (286)
Q Consensus 173 e~L~l~~c~~~~~----~~~~~-~L~~L~l~~~~~ 202 (286)
++|+++++..... +..++ +|+.|+++++.+
T Consensus 152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 7777766543211 11233 566666655443
No 55
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.55 E-value=5.6e-08 Score=76.54 Aligned_cols=123 Identities=15% Similarity=0.074 Sum_probs=59.9
Q ss_pred ccCCccEEEEeceeeccCCcCccc-CCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc---e-eecccCCce
Q 042585 120 RSKSIKVLTLQNYKLESLGNDDVK-LLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV---N-VSSCKNLKH 194 (286)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~---~-~~~~~~L~~ 194 (286)
.+.+|+.|+++++.+... +.... +|+|+.|+|+++.+++- .-+..+++|+.|+++++.... . +..+++|+.
T Consensus 17 ~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 455666666666655432 22222 33666666666664331 123456666666666553221 1 122566666
Q ss_pred EEecCcccChhhHHHHHhcCCCccEEecccccCcc--cc----ccccccccEEEeecc
Q 042585 195 LDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIE--SI----TISSLRLKKLIINTC 246 (286)
Q Consensus 195 L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~--~~----~i~~p~L~~L~ls~c 246 (286)
|+++++.+++-.-......+|+|++|+++++.-.. .. .-..|+|+.|+++++
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 66666554431100123456666666666653211 10 112356666666655
No 56
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.54 E-value=5.5e-07 Score=82.81 Aligned_cols=146 Identities=19% Similarity=0.205 Sum_probs=96.6
Q ss_pred hccCCccEEEEeceeecc-CCcCcccCCCccEEEcceeeeCh-HHHHHHHhcCCCcceEEeeeccccc-----eeecccC
Q 042585 119 LRSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDVYADD-QVMNNLFAQSPLLQHLEFVRYNNLV-----NVSSCKN 191 (286)
Q Consensus 119 ~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~Le~L~l~~c~~~~-----~~~~~~~ 191 (286)
..+++|++|+++++.+.. .......+++|++|+|+++.++. ..+...+..+++|+.|+++++.... .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 356788888888887744 22344568899999999988654 2344556789999999999775432 1333789
Q ss_pred CceEEecCcccChhhHHHHHhcC-CCccEEecccccCccccc---cccccccEEEeecccCCcccc---cccc-ceeeec
Q 042585 192 LKHLDLCDGSYTDEWLNSQISGL-PLLEQLHISLCNNIESIT---ISSLRLKKLIINTCESNTIFS---FGSI-ALFSLA 263 (286)
Q Consensus 192 L~~L~l~~~~~~~~~l~~~~~~~-p~L~~L~l~~c~~~~~~~---i~~p~L~~L~ls~c~~~~~~~---~~~~-~l~s~~ 263 (286)
|+.|+++++.++... .... ++|++|++++|.- +.+. ...++|+.|+++++.. +.+. +..+ .+..+.
T Consensus 401 L~~L~Ls~N~l~~~~----~~~l~~~L~~L~Ls~N~l-~~ip~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 401 LLSLNMSSNILTDTI----FRCLPPRIKVLDLHSNKI-KSIPKQVVKLEALQELNVASNQL-KSVPDGIFDRLTSLQKIW 474 (520)
T ss_dssp CCEEECCSSCCCGGG----GGSCCTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEE
T ss_pred CCEEECcCCCCCcch----hhhhcccCCEEECCCCcc-cccchhhhcCCCCCEEECCCCcC-CccCHHHhccCCcccEEE
Confidence 999999988776532 2233 7999999999742 2221 2458999999998853 3333 2222 244555
Q ss_pred cC-CCCCc
Q 042585 264 LR-KPLGL 270 (286)
Q Consensus 264 ~~-~~~~~ 270 (286)
+. .|+..
T Consensus 475 l~~N~~~c 482 (520)
T 2z7x_B 475 LHTNPWDC 482 (520)
T ss_dssp CCSSCBCC
T ss_pred CcCCCCcc
Confidence 54 46643
No 57
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.54 E-value=2.8e-08 Score=93.18 Aligned_cols=127 Identities=17% Similarity=0.119 Sum_probs=61.0
Q ss_pred hccCCccEEEEeceeeccCCc--CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc-----eeecccC
Q 042585 119 LRSKSIKVLTLQNYKLESLGN--DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV-----NVSSCKN 191 (286)
Q Consensus 119 ~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~-----~~~~~~~ 191 (286)
..+++|+.|+++++.+....+ ....+++|++|+++++.++... ...+..+++|+.|++++|.... .+..+++
T Consensus 396 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF-DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474 (606)
T ss_dssp TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC-TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc-hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence 344444444444444422111 2233455555555554421110 1113445666666665553221 1222667
Q ss_pred CceEEecCcccChhhHHHHHhcCCCccEEecccccCccc--cccc-cccccEEEeeccc
Q 042585 192 LKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIES--ITIS-SLRLKKLIINTCE 247 (286)
Q Consensus 192 L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~--~~i~-~p~L~~L~ls~c~ 247 (286)
|+.|+++++.++.... .....+++|++|++++|.-... ..+. .++|+.|++++|.
T Consensus 475 L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISW-GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp CCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred CCEEECCCCcCCccCh-hhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 7777777665543211 2234667777777777632221 1122 3678888888775
No 58
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.53 E-value=2.3e-07 Score=84.35 Aligned_cols=138 Identities=14% Similarity=0.098 Sum_probs=96.1
Q ss_pred hCCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585 94 ERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ 173 (286)
Q Consensus 94 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 173 (286)
-..+++|+++... -..+| .+..+++|++|+++++.+... ....+++|++|+|+++.++.-. +..+++|+
T Consensus 41 l~~L~~L~Ls~n~----l~~~~-~l~~l~~L~~L~Ls~n~l~~~--~~~~l~~L~~L~Ls~N~l~~~~----~~~l~~L~ 109 (457)
T 3bz5_A 41 LATLTSLDCHNSS----ITDMT-GIEKLTGLTKLICTSNNITTL--DLSQNTNLTYLACDSNKLTNLD----VTPLTKLT 109 (457)
T ss_dssp HTTCCEEECCSSC----CCCCT-TGGGCTTCSEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSCCC----CTTCTTCC
T ss_pred cCCCCEEEccCCC----cccCh-hhcccCCCCEEEccCCcCCeE--ccccCCCCCEEECcCCCCceee----cCCCCcCC
Confidence 3688999998221 11234 567889999999999988653 3567899999999999855432 56789999
Q ss_pred eEEeeecccc-ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccccc-cccccEEEeecc
Q 042585 174 HLEFVRYNNL-VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITIS-SLRLKKLIINTC 246 (286)
Q Consensus 174 ~L~l~~c~~~-~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~-~p~L~~L~ls~c 246 (286)
.|+++++... ..+..+++|++|++.++.++.-. ...+++|++|++++|..++.+.+. .++|+.|+++++
T Consensus 110 ~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 110 YLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN 180 (457)
T ss_dssp EEECCSSCCSCCCCTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSS
T ss_pred EEECCCCcCCeecCCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCcccccccccCCcCCEEECCCC
Confidence 9999877432 22333889999999887766421 356788888888887655554433 356666666655
No 59
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.53 E-value=2.2e-07 Score=76.70 Aligned_cols=123 Identities=11% Similarity=0.067 Sum_probs=53.1
Q ss_pred hccCCccEEEEec-eeeccCC-cCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc---eEEeeeccccce-----eec
Q 042585 119 LRSKSIKVLTLQN-YKLESLG-NDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ---HLEFVRYNNLVN-----VSS 188 (286)
Q Consensus 119 ~~~~~L~~L~L~~-~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le---~L~l~~c~~~~~-----~~~ 188 (286)
..+++|++|++++ +.+.... .....+++|++|+|.++.++. +.. +..+++|+ .|+++++..... +..
T Consensus 77 ~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~ 153 (239)
T 2xwt_C 77 YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG 153 (239)
T ss_dssp ESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred CCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCcccccc
Confidence 3455555555554 3332211 122345555555555555222 111 33455555 555554412211 222
Q ss_pred ccCCc-eEEecCcccChhhHHHHHhcCCCccEEecccccCcccccc----cc-ccccEEEeecc
Q 042585 189 CKNLK-HLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITI----SS-LRLKKLIINTC 246 (286)
Q Consensus 189 ~~~L~-~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i----~~-p~L~~L~ls~c 246 (286)
+++|+ .|++.++.++.-. ......++|++|+++++..++.+.. .. ++|+.|+++++
T Consensus 154 l~~L~~~L~l~~n~l~~i~--~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 154 LCNETLTLKLYNNGFTSVQ--GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp TBSSEEEEECCSCCCCEEC--TTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred hhcceeEEEcCCCCCcccC--HhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence 55555 6666554433100 0111225566666665543333221 12 45666666554
No 60
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.52 E-value=1.2e-07 Score=91.71 Aligned_cols=135 Identities=21% Similarity=0.157 Sum_probs=80.4
Q ss_pred CCCcchhccCCccEEEEeceeecc-CCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----ceee
Q 042585 113 SLPQMVLRSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVS 187 (286)
Q Consensus 113 ~l~~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~ 187 (286)
.+|..+..+++|+.|++++|.+.. .+.....+++|+.|+|+++.+.... ...+..+++|+.|++++|... ..+.
T Consensus 409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 487 (768)
T 3rgz_A 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI-PQELMYVKTLETLILDFNDLTGEIPSGLS 487 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcC-CHHHcCCCCceEEEecCCcccCcCCHHHh
Confidence 345556667777777777776632 2233445777777777777633211 112345777777777766433 1233
Q ss_pred cccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc---cccccccEEEeecccCC
Q 042585 188 SCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT---ISSLRLKKLIINTCESN 249 (286)
Q Consensus 188 ~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i~~p~L~~L~ls~c~~~ 249 (286)
.+++|+.|++.++.++.... .....+++|++|++++|.....+. -..++|+.|++++|...
T Consensus 488 ~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGEIP-KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred cCCCCCEEEccCCccCCcCC-hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 37788888887776553211 223567788888888875432221 12477888888877544
No 61
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.52 E-value=3.1e-08 Score=86.77 Aligned_cols=12 Identities=8% Similarity=0.127 Sum_probs=6.8
Q ss_pred ccccEEEeeccc
Q 042585 236 LRLKKLIINTCE 247 (286)
Q Consensus 236 p~L~~L~ls~c~ 247 (286)
++|+.|+++++.
T Consensus 222 ~~L~~L~L~~n~ 233 (353)
T 2z80_A 222 SSVECLELRDTD 233 (353)
T ss_dssp TTEEEEEEESCB
T ss_pred ccccEEECCCCc
Confidence 456666665553
No 62
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.52 E-value=3.3e-08 Score=79.90 Aligned_cols=123 Identities=21% Similarity=0.108 Sum_probs=62.4
Q ss_pred hhccCCccEEEEeceeeccCCcC-cccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc----eeecccCC
Q 042585 118 VLRSKSIKVLTLQNYKLESLGND-DVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV----NVSSCKNL 192 (286)
Q Consensus 118 ~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~----~~~~~~~L 192 (286)
+..+++|++|+++++.+....+. ...+++|++|+|+++.++.-. ...+..+++|+.|+++++.... .+..+++|
T Consensus 48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 126 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP-NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL 126 (208)
T ss_dssp TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC-HhHhcCccCCCEEEcCCCcCcccCHhHhccCCcC
Confidence 34566777777776666432222 234667777777666633111 1123456667777776553221 12225667
Q ss_pred ceEEecCcccChhhHHHHHhcCCCccEEecccccCccccccccccccEEEeecc
Q 042585 193 KHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITISSLRLKKLIINTC 246 (286)
Q Consensus 193 ~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~~p~L~~L~ls~c 246 (286)
++|++.++.++.-. ......+++|++|++.++.... ..|.|+.|+++.+
T Consensus 127 ~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~~----~~~~l~~L~~~~n 175 (208)
T 2o6s_A 127 KDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWDC----TCPGIRYLSEWIN 175 (208)
T ss_dssp CEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBCC----CTTTTHHHHHHHH
T ss_pred CEEECCCCccceeC-HHHhccCCCccEEEecCCCeec----CCCCHHHHHHHHH
Confidence 77777665544211 0223456667777766653221 1245555554444
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.50 E-value=1.2e-07 Score=86.90 Aligned_cols=149 Identities=15% Similarity=0.131 Sum_probs=81.8
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHH----H-------
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVM----N------- 163 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l----~------- 163 (286)
+++++|+++... .....|..+..+++|++|+|++|.+... +....+++|++|+|+++.++.-.. +
T Consensus 34 ~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N 109 (487)
T 3oja_A 34 WNVKELDLSGNP---LSQISAADLAPFTKLELLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANN 109 (487)
T ss_dssp GGCCEEECCSSC---CCCCCGGGGTTCTTCCEEECTTSCCEEE-EECTTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred CCccEEEeeCCc---CCCCCHHHHhCCCCCCEEEeeCCCCCCC-cccccCCCCCEEEecCCcCCCCCCCCCcCEEECcCC
Confidence 378899998222 1122345667889999999999877432 225668888888888887432110 0
Q ss_pred ---H-HHhcCCCcceEEeeecccc----ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc-cc
Q 042585 164 ---N-LFAQSPLLQHLEFVRYNNL----VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT-IS 234 (286)
Q Consensus 164 ---~-l~~~cp~Le~L~l~~c~~~----~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~-i~ 234 (286)
. ....+|+|+.|+++++... ..+..+++|+.|+++++.++......+...+++|++|++++|.--.... ..
T Consensus 110 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~ 189 (487)
T 3oja_A 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189 (487)
T ss_dssp CCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC
T ss_pred cCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccccc
Confidence 0 0012344444444443221 1122256666666666655442222333356777777777754221111 12
Q ss_pred cccccEEEeeccc
Q 042585 235 SLRLKKLIINTCE 247 (286)
Q Consensus 235 ~p~L~~L~ls~c~ 247 (286)
.++|+.|+++++.
T Consensus 190 l~~L~~L~Ls~N~ 202 (487)
T 3oja_A 190 FAKLKTLDLSSNK 202 (487)
T ss_dssp CTTCCEEECCSSC
T ss_pred CCCCCEEECCCCC
Confidence 4678888877764
No 64
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.49 E-value=1.3e-07 Score=83.10 Aligned_cols=125 Identities=18% Similarity=0.111 Sum_probs=67.9
Q ss_pred CCccEEEEeceeeccCCcC-----ccc-CCCccEEEcceeeeChHHHHHH---HhcCC-CcceEEeeeccccce----ee
Q 042585 122 KSIKVLTLQNYKLESLGND-----DVK-LLSLRKLHLSDVYADDQVMNNL---FAQSP-LLQHLEFVRYNNLVN----VS 187 (286)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~~-----~~~-~~~L~~L~L~~~~~~~~~l~~l---~~~cp-~Le~L~l~~c~~~~~----~~ 187 (286)
++|++|+|++|.+...... ... .++|++|+|+++.+++.+...+ +..+| +|++|++++|..... +.
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 188 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA 188 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHH
Confidence 5677777777666331110 111 2467777777776554333332 33444 777777776643211 11
Q ss_pred ----cc-cCCceEEecCcccChhhHHHH----HhcCCCccEEecccccCcccccc--------ccccccEEEeeccc
Q 042585 188 ----SC-KNLKHLDLCDGSYTDEWLNSQ----ISGLPLLEQLHISLCNNIESITI--------SSLRLKKLIINTCE 247 (286)
Q Consensus 188 ----~~-~~L~~L~l~~~~~~~~~l~~~----~~~~p~L~~L~l~~c~~~~~~~i--------~~p~L~~L~ls~c~ 247 (286)
.+ ++|++|+++++.+++.+...+ ...+++|++|++++|. +++.+. ..++|+.|++++|.
T Consensus 189 ~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 189 KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 13 477777777776665433222 2224577788777763 222221 13678888888775
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.49 E-value=8e-08 Score=87.09 Aligned_cols=127 Identities=18% Similarity=0.143 Sum_probs=76.6
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCC-cCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLG-NDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ 173 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 173 (286)
.+++.|+++... -....+..+..+++|+.|+|+++.+.... ....++++|++|+|+++.++.-. ...+..+++|+
T Consensus 75 ~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMENN---IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCC
T ss_pred CCccEEECcCCc---CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hhhhcccCCCC
Confidence 477888887221 11222445667899999999998774422 23456899999999988744211 12245689999
Q ss_pred eEEeeeccccc----eeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585 174 HLEFVRYNNLV----NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 174 ~L~l~~c~~~~----~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
.|+++++.... .+..+++|+.|++.++......-......+++|++|++++|
T Consensus 151 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC
Confidence 99998765331 12236777777777542111100022345666666666664
No 66
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.49 E-value=3.9e-08 Score=78.99 Aligned_cols=112 Identities=20% Similarity=0.171 Sum_probs=83.4
Q ss_pred cCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc--ceeecc
Q 042585 112 NSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL--VNVSSC 189 (286)
Q Consensus 112 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~~ 189 (286)
..+|..+..+++|++|+++++.+... +....+++|++|+|+++.++. +......+|+|+.|+++++... ..+..+
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l~~l-~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l 114 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASLSGIEKL 114 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEESCC-CCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCCHHHHHHH
T ss_pred hhhhHHHhcCCCCCEEECCCCCCccc-cccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCcCCccccC
Confidence 34555778899999999999988554 455668999999999998552 3344556789999999987432 223338
Q ss_pred cCCceEEecCcccChhhHHHHHhcCCCccEEeccccc
Q 042585 190 KNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCN 226 (286)
Q Consensus 190 ~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~ 226 (286)
++|+.|++.++.+++-........+++|++|+++++.
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 9999999998887752211346789999999999974
No 67
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.49 E-value=8.9e-08 Score=89.77 Aligned_cols=134 Identities=17% Similarity=0.153 Sum_probs=97.3
Q ss_pred cchhccCCccEEEEeceeecc-CCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc----eeeccc
Q 042585 116 QMVLRSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV----NVSSCK 190 (286)
Q Consensus 116 ~~~~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~----~~~~~~ 190 (286)
..+..+++|+.|++++|.+.. .......+++|++|+|.++.+++..+...+..+++|+.|++++|.... .+..++
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 497 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence 356678999999999988844 223455799999999999996654344446779999999999885432 233389
Q ss_pred CCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc--cc-cc-cccEEEeecccCCcc
Q 042585 191 NLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT--IS-SL-RLKKLIINTCESNTI 251 (286)
Q Consensus 191 ~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~--i~-~p-~L~~L~ls~c~~~~~ 251 (286)
+|++|+++++.++.... .....+++|++|++++|. ++.+. +. .| +|+.|++++++....
T Consensus 498 ~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 498 RLQLLNMSHNNLLFLDS-SHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp TCCEEECCSSCCSCEEG-GGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred cCCEEECCCCcCCCcCH-HHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCcccC
Confidence 99999999987765311 334678999999999985 33332 22 34 699999998765543
No 68
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.48 E-value=6.5e-08 Score=87.44 Aligned_cols=127 Identities=15% Similarity=0.046 Sum_probs=66.8
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeec-cC-CcCcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLE-SL-GNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL 172 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 172 (286)
.++++|+++... -....|..+..+++|++|+++++.+. .. .....++++|++|+|+++.++...- ..+..+++|
T Consensus 30 ~~l~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L 105 (455)
T 3v47_A 30 AHVNYVDLSLNS---IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET-GAFNGLANL 105 (455)
T ss_dssp TTCCEEECCSSC---CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT-TTTTTCTTC
T ss_pred CccCEEEecCCc---cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh-hhccCcccC
Confidence 466777776211 11122444556677777777776542 11 1224456777777777665322111 113456677
Q ss_pred ceEEeeeccccc----e--eecccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585 173 QHLEFVRYNNLV----N--VSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 173 e~L~l~~c~~~~----~--~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
+.|++++|.... . +..+++|++|+++++.++......+...+++|++|+++++
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence 777776654321 1 2236677777776665443211122456667777776665
No 69
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.48 E-value=1e-07 Score=83.78 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=98.6
Q ss_pred CCceEEEEE-eccCCCcccCCCcchhccC-CccEEEEeceeeccC-CcCccc-----CCCccEEEcceeeeChH---HHH
Q 042585 95 RNVEELEVE-HLRRLDTWNSLPQMVLRSK-SIKVLTLQNYKLESL-GNDDVK-----LLSLRKLHLSDVYADDQ---VMN 163 (286)
Q Consensus 95 ~~l~~L~l~-~~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~~-~~~~~~-----~~~L~~L~L~~~~~~~~---~l~ 163 (286)
.++++|+++ +.-.......+...+..++ +|++|+|++|.+... ...... +++|++|+|+++.+++. .+.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 469999998 2210011111113445667 899999999988431 111222 39999999999996543 344
Q ss_pred HHHhcC-CCcceEEeeeccccce----eec-----ccCCceEEecCcccChhhHHHH---HhcCC-CccEEecccccCcc
Q 042585 164 NLFAQS-PLLQHLEFVRYNNLVN----VSS-----CKNLKHLDLCDGSYTDEWLNSQ---ISGLP-LLEQLHISLCNNIE 229 (286)
Q Consensus 164 ~l~~~c-p~Le~L~l~~c~~~~~----~~~-----~~~L~~L~l~~~~~~~~~l~~~---~~~~p-~L~~L~l~~c~~~~ 229 (286)
..+..+ ++|+.|++++|..... +.. +++|++|+++++.+++.+...+ ....+ +|++|++++|.- +
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l-~ 180 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL-A 180 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG-G
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC-c
Confidence 445556 8999999998764311 111 3599999999998876544333 34455 999999999842 2
Q ss_pred cccc--------cc-ccccEEEeeccc
Q 042585 230 SITI--------SS-LRLKKLIINTCE 247 (286)
Q Consensus 230 ~~~i--------~~-p~L~~L~ls~c~ 247 (286)
..+. .. ++|+.|++++|.
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence 2221 12 499999999986
No 70
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.48 E-value=3.5e-07 Score=76.90 Aligned_cols=126 Identities=21% Similarity=0.156 Sum_probs=94.2
Q ss_pred chhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc--ceeecccCCce
Q 042585 117 MVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL--VNVSSCKNLKH 194 (286)
Q Consensus 117 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~~~~L~~ 194 (286)
.+..+++|++|+++++.+... +....+++|++|+|+++.+++-.- +..+++|+.|+++++... ..+. .++|+.
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~N~l~~l~~~~-~~~L~~ 110 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNRNRLKNLNGIP-SACLSR 110 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCSSCCSCCTTCC-CSSCCE
T ss_pred chhhcCcCcEEECcCCCcccc-hHHhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCCCccCCcCccc-cCcccE
Confidence 356789999999999988554 456679999999999998554321 678999999999987532 2222 389999
Q ss_pred EEecCcccChhhHHHHHhcCCCccEEecccccCcccc-cc-ccccccEEEeecccCCcc
Q 042585 195 LDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESI-TI-SSLRLKKLIINTCESNTI 251 (286)
Q Consensus 195 L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~-~i-~~p~L~~L~ls~c~~~~~ 251 (286)
|+++++.+++- .....+++|+.|+++++.- +.+ .+ ..++|+.|+++++.--..
T Consensus 111 L~L~~N~l~~~---~~l~~l~~L~~L~Ls~N~i-~~~~~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 111 LFLDNNELRDT---DSLIHLKNLEILSIRNNKL-KSIVMLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp EECCSSCCSBS---GGGTTCTTCCEEECTTSCC-CBCGGGGGCTTCCEEECTTSCCCBC
T ss_pred EEccCCccCCC---hhhcCcccccEEECCCCcC-CCChHHccCCCCCEEECCCCcCcch
Confidence 99999887653 2356899999999999742 222 22 247999999998854433
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.47 E-value=2.1e-07 Score=76.86 Aligned_cols=164 Identities=14% Similarity=0.159 Sum_probs=105.9
Q ss_pred hCCceEEEEEeccCCCcccCCCc-chhccCCccEEEEecee-eccCCc-CcccCCCccEEEcce-eeeChHHHHHHHhcC
Q 042585 94 ERNVEELEVEHLRRLDTWNSLPQ-MVLRSKSIKVLTLQNYK-LESLGN-DDVKLLSLRKLHLSD-VYADDQVMNNLFAQS 169 (286)
Q Consensus 94 ~~~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~-~~~~~~-~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~c 169 (286)
..++++|++.... -..+|. .+..+++|++|+++++. +....+ ....+++|++|+|.+ +.++.-. ...+..+
T Consensus 30 ~~~l~~L~l~~n~----l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l 104 (239)
T 2xwt_C 30 PPSTQTLKLIETH----LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKEL 104 (239)
T ss_dssp CTTCCEEEEESCC----CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECC
T ss_pred CCcccEEEEeCCc----ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCC
Confidence 3478899998221 123333 45678999999999986 644323 455799999999998 4444211 1124579
Q ss_pred CCcceEEeeecccc--ceeecccCCc---eEEecCc-ccChhhHHHHHhcCCCcc-EEecccccCccccc---ccccccc
Q 042585 170 PLLQHLEFVRYNNL--VNVSSCKNLK---HLDLCDG-SYTDEWLNSQISGLPLLE-QLHISLCNNIESIT---ISSLRLK 239 (286)
Q Consensus 170 p~Le~L~l~~c~~~--~~~~~~~~L~---~L~l~~~-~~~~~~l~~~~~~~p~L~-~L~l~~c~~~~~~~---i~~p~L~ 239 (286)
++|+.|++.++... ..+..+++|+ .|++.++ .++.-. ......+++|+ +|+++++.- +.+. ...++|+
T Consensus 105 ~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~-~~~~~~l~~L~~~L~l~~n~l-~~i~~~~~~~~~L~ 182 (239)
T 2xwt_C 105 PLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIP-VNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLD 182 (239)
T ss_dssp TTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEEC-TTTTTTTBSSEEEEECCSCCC-CEECTTTTTTCEEE
T ss_pred CCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcC-cccccchhcceeEEEcCCCCC-cccCHhhcCCCCCC
Confidence 99999999987432 3344477777 9999987 554311 02245789999 999988642 2322 2236899
Q ss_pred EEEeecccCCccc---ccccc--ceeeecc
Q 042585 240 KLIINTCESNTIF---SFGSI--ALFSLAL 264 (286)
Q Consensus 240 ~L~ls~c~~~~~~---~~~~~--~l~s~~~ 264 (286)
.|+++++..++.+ .+..+ .+..+.+
T Consensus 183 ~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212 (239)
T ss_dssp EEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred EEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence 9999998645443 34443 3444444
No 72
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.46 E-value=9.4e-08 Score=86.29 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=82.2
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCC-cCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLG-NDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ 173 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 173 (286)
.+++.|+++... -....+..+..+++|++|+|+++.+.... ....++++|++|+|+++.++.-. ...+..+++|+
T Consensus 64 ~~l~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~ 139 (440)
T 3zyj_A 64 TNTRLLNLHENQ---IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLK 139 (440)
T ss_dssp TTCSEEECCSCC---CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCC
T ss_pred CCCcEEEccCCc---CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCc
Confidence 567888887221 11122345668899999999998874422 23456899999999998844211 11245689999
Q ss_pred eEEeeeccccc----eeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585 174 HLEFVRYNNLV----NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 174 ~L~l~~c~~~~----~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
.|+++++.... .+..+++|+.|++.++.............+++|++|++++|
T Consensus 140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence 99999765331 23338999999998753221100123456788888888876
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.45 E-value=1e-07 Score=82.32 Aligned_cols=149 Identities=15% Similarity=0.130 Sum_probs=78.8
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHH----HH-------
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQV----MN------- 163 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~----l~------- 163 (286)
.++++|+++... -....|..+..+++|++|+|+++.+... +....+++|++|+|+++.++.-. ++
T Consensus 34 ~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n 109 (317)
T 3o53_A 34 WNVKELDLSGNP---LSQISAADLAPFTKLELLNLSSNVLYET-LDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANN 109 (317)
T ss_dssp GGCSEEECTTSC---CCCCCHHHHTTCTTCCEEECTTSCCEEE-EEETTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred CCCCEEECcCCc---cCcCCHHHhhCCCcCCEEECCCCcCCcc-hhhhhcCCCCEEECcCCccccccCCCCcCEEECCCC
Confidence 478888887211 1112234566778888888888776332 22556788888888877633210 00
Q ss_pred ----HHHhcCCCcceEEeeecccc----ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCcccc-ccc
Q 042585 164 ----NLFAQSPLLQHLEFVRYNNL----VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESI-TIS 234 (286)
Q Consensus 164 ----~l~~~cp~Le~L~l~~c~~~----~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~-~i~ 234 (286)
.....+++|+.|+++++... ..+..+++|+.|+++++.++......+...+++|++|++++|.--..- ...
T Consensus 110 ~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 189 (317)
T 3o53_A 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189 (317)
T ss_dssp CCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC
T ss_pred ccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc
Confidence 00112344444444443221 112225667777776665554322233345677777777776421111 112
Q ss_pred cccccEEEeeccc
Q 042585 235 SLRLKKLIINTCE 247 (286)
Q Consensus 235 ~p~L~~L~ls~c~ 247 (286)
.++|+.|+++++.
T Consensus 190 l~~L~~L~Ls~N~ 202 (317)
T 3o53_A 190 FAKLKTLDLSSNK 202 (317)
T ss_dssp CTTCCEEECCSSC
T ss_pred cccCCEEECCCCc
Confidence 4678888887764
No 74
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.44 E-value=1.1e-07 Score=89.23 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=25.0
Q ss_pred ccCCceEEecCcccChhhH--HHHHhcCCCccEEecccccCcccc--cc-ccccccEEEeeccc
Q 042585 189 CKNLKHLDLCDGSYTDEWL--NSQISGLPLLEQLHISLCNNIESI--TI-SSLRLKKLIINTCE 247 (286)
Q Consensus 189 ~~~L~~L~l~~~~~~~~~l--~~~~~~~p~L~~L~l~~c~~~~~~--~i-~~p~L~~L~ls~c~ 247 (286)
+++|++|++.++.+++..+ ......+++|++|++++|.-.... .+ ..++|+.|+++++.
T Consensus 448 l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 448 LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCc
Confidence 4555555555544332100 011234555555555554221110 11 12556666666553
No 75
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.44 E-value=4.8e-07 Score=82.33 Aligned_cols=126 Identities=18% Similarity=0.127 Sum_probs=59.2
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccC-CcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESL-GNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ 173 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 173 (286)
.++++|+++... .....+..+..+++|++|+++++.+... ......+++|++|+|.++.++...- ..+..+++|+
T Consensus 104 ~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~ 179 (477)
T 2id5_A 104 SNLTKLDISENK---IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT-EALSHLHGLI 179 (477)
T ss_dssp TTCCEEECTTSC---CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH-HHHTTCTTCC
T ss_pred CCCCEEECCCCc---cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh-hHhcccCCCc
Confidence 466666666111 1112233445566666666666554221 1233346666666666665332111 1233455555
Q ss_pred eEEeeec------------------------cccceeec----ccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585 174 HLEFVRY------------------------NNLVNVSS----CKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 174 ~L~l~~c------------------------~~~~~~~~----~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
.|++.++ .....+.. ..+|++|++.++.++.-.. .....+++|++|+++++
T Consensus 180 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY-LAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp EEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH-HHHTTCTTCCEEECCSS
T ss_pred EEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH-HHhcCccccCeeECCCC
Confidence 5555443 22211111 2255555555554442211 33456677777777665
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.43 E-value=1.1e-07 Score=81.19 Aligned_cols=145 Identities=17% Similarity=0.155 Sum_probs=83.6
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH 174 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 174 (286)
.+++.|+++... .....+..+..+++|++|+|+++.+... +....+++|++|+|+++.++. +......+|+|+.
T Consensus 31 ~~l~~L~L~~N~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~ 104 (290)
T 1p9a_G 31 KDTTILHLSENL---LYTFSLATLMPYTRLTQLNLDRAELTKL-QVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTV 104 (290)
T ss_dssp TTCCEEECTTSC---CSEEEGGGGTTCTTCCEEECTTSCCCEE-ECCSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCE
T ss_pred CCCCEEEcCCCc---CCccCHHHhhcCCCCCEEECCCCccCcc-cCCCCCCcCCEEECCCCcCCc--CchhhccCCCCCE
Confidence 456677776111 1111233455677888888888776432 223567888888888777431 2223456778888
Q ss_pred EEeeecccc----ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc---c-ccccccEEEeecc
Q 042585 175 LEFVRYNNL----VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT---I-SSLRLKKLIINTC 246 (286)
Q Consensus 175 L~l~~c~~~----~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i-~~p~L~~L~ls~c 246 (286)
|+++++... ..+..+++|+.|+++++.++.-. ......+++|+.|+++++. ++.+. + ..++|+.|+++++
T Consensus 105 L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp EECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC-hhhcccccCCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCC
Confidence 888766432 11333778888888776554311 1223467778888887753 22221 1 2367777777766
Q ss_pred c
Q 042585 247 E 247 (286)
Q Consensus 247 ~ 247 (286)
.
T Consensus 183 ~ 183 (290)
T 1p9a_G 183 S 183 (290)
T ss_dssp C
T ss_pred c
Confidence 4
No 77
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.41 E-value=1.1e-07 Score=87.52 Aligned_cols=151 Identities=16% Similarity=0.146 Sum_probs=102.1
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccC---CcCcccCCCccEEEcceeeeChHHHHHHHhcCCC
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESL---GNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPL 171 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~ 171 (286)
.++++|+++... -....|..+..+++|+.|++++|.+... ......+++|++|+|+++.++...-......+++
T Consensus 324 ~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 324 SPFLHLDFSNNL---LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp CCCCEEECCSSC---CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred CcccEEEeECCc---cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 355666665111 1223466677889999999999988531 1224579999999999998543211123456899
Q ss_pred cceEEeeeccccceeec--ccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc---c-ccccccEEEeec
Q 042585 172 LQHLEFVRYNNLVNVSS--CKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT---I-SSLRLKKLIINT 245 (286)
Q Consensus 172 Le~L~l~~c~~~~~~~~--~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i-~~p~L~~L~ls~ 245 (286)
|+.|++++|.....+.. .++|+.|+++++.++. +......+++|++|++++|. ++.+. + ..++|+.|++++
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS--IPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHT 477 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECcCCCCCcchhhhhcccCCEEECCCCcccc--cchhhhcCCCCCEEECCCCc-CCccCHHHhccCCcccEEECcC
Confidence 99999998864322222 3799999999887662 11223489999999999984 33332 2 247899999998
Q ss_pred ccCCcc
Q 042585 246 CESNTI 251 (286)
Q Consensus 246 c~~~~~ 251 (286)
++....
T Consensus 478 N~~~c~ 483 (520)
T 2z7x_B 478 NPWDCS 483 (520)
T ss_dssp SCBCCC
T ss_pred CCCccc
Confidence 865444
No 78
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.41 E-value=1.2e-07 Score=79.99 Aligned_cols=126 Identities=21% Similarity=0.207 Sum_probs=72.7
Q ss_pred CCceEEEEEeccCCCcccCCC-cchhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585 95 RNVEELEVEHLRRLDTWNSLP-QMVLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL 172 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 172 (286)
.++++|+++... -..++ ..+..+++|++|+++++.+....+ ....+++|++|+|+++.++.... ..+..+++|
T Consensus 28 ~~l~~L~ls~n~----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFNP----LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSL 102 (276)
T ss_dssp TTCCEEECTTCC----CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTC
T ss_pred CCccEEECCCCc----ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccCh-hhhcCCccc
Confidence 457777776111 11222 245567788888888876643222 34557788888888776432211 123457778
Q ss_pred ceEEeeecccc----ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585 173 QHLEFVRYNNL----VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 173 e~L~l~~c~~~----~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
+.|++.++... ..+..+++|+.|++.++.++.-.+......+++|++|++++|
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC
Confidence 88877765432 123336777777777665543111133456677777777775
No 79
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.41 E-value=7.3e-07 Score=79.00 Aligned_cols=86 Identities=17% Similarity=0.154 Sum_probs=40.5
Q ss_pred chhccCCccEEEEeceeeccCCcC-cccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc----eeecccC
Q 042585 117 MVLRSKSIKVLTLQNYKLESLGND-DVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV----NVSSCKN 191 (286)
Q Consensus 117 ~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~----~~~~~~~ 191 (286)
.+..+++|++|+++++.+....+. ...+++|++|+|+++.++.-. ..++..+++|+.|+++++.... .+..+++
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 166 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP-RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTT
T ss_pred hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCC-HHHhcCCCCCcEEECCCCccCccChhhccCCCC
Confidence 344556666666666555332122 234566666666665533110 1122345666666665543221 1222555
Q ss_pred CceEEecCcccC
Q 042585 192 LKHLDLCDGSYT 203 (286)
Q Consensus 192 L~~L~l~~~~~~ 203 (286)
|+.|++.++.++
T Consensus 167 L~~L~l~~n~l~ 178 (390)
T 3o6n_A 167 LQNLQLSSNRLT 178 (390)
T ss_dssp CCEEECCSSCCS
T ss_pred CCEEECCCCcCC
Confidence 555555555443
No 80
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.41 E-value=8.2e-08 Score=88.88 Aligned_cols=38 Identities=29% Similarity=0.225 Sum_probs=15.9
Q ss_pred hccCCccEEEEeceeeccCCcC-cccCCCccEEEcceee
Q 042585 119 LRSKSIKVLTLQNYKLESLGND-DVKLLSLRKLHLSDVY 156 (286)
Q Consensus 119 ~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~ 156 (286)
..+++|++|+|+++.+....+. ...+++|++|+|+++.
T Consensus 71 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 109 (549)
T 2z81_A 71 YSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109 (549)
T ss_dssp TTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred cccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc
Confidence 3444444444444444221111 2334444444444444
No 81
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.40 E-value=2e-06 Score=80.00 Aligned_cols=125 Identities=15% Similarity=0.106 Sum_probs=86.4
Q ss_pred hccCCccEEEEeceeecc-CCcCcccCCCccEEEcceeeeCh-HHHHHHHhcCCCcceEEeeeccccc-----eeecccC
Q 042585 119 LRSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDVYADD-QVMNNLFAQSPLLQHLEFVRYNNLV-----NVSSCKN 191 (286)
Q Consensus 119 ~~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~Le~L~l~~c~~~~-----~~~~~~~ 191 (286)
..+++|++|+++++.+.. .......+++|++|+|+++.++. ..+...+..+++|+.|+++++.... .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 456788888888887744 22344568899999999888553 2334445678999999998775432 1333789
Q ss_pred CceEEecCcccChhhHHHHHhcC-CCccEEecccccCccccc---cccccccEEEeecccC
Q 042585 192 LKHLDLCDGSYTDEWLNSQISGL-PLLEQLHISLCNNIESIT---ISSLRLKKLIINTCES 248 (286)
Q Consensus 192 L~~L~l~~~~~~~~~l~~~~~~~-p~L~~L~l~~c~~~~~~~---i~~p~L~~L~ls~c~~ 248 (286)
|+.|+++++.+++. +.... ++|++|+++++. ++.+. ...++|+.|+++++.-
T Consensus 430 L~~L~l~~n~l~~~----~~~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~l 485 (562)
T 3a79_B 430 ILVLNLSSNMLTGS----VFRCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQL 485 (562)
T ss_dssp CCEEECCSSCCCGG----GGSSCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSCC
T ss_pred CCEEECCCCCCCcc----hhhhhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCCC
Confidence 99999998877653 23334 689999999973 33322 1458999999998754
No 82
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.40 E-value=3.5e-07 Score=85.71 Aligned_cols=59 Identities=17% Similarity=0.079 Sum_probs=27.6
Q ss_pred ccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc---c-ccccccEEEeecccC
Q 042585 189 CKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT---I-SSLRLKKLIINTCES 248 (286)
Q Consensus 189 ~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i-~~p~L~~L~ls~c~~ 248 (286)
+++|+.|++.++.+..... .....+++|++|++++|....... + ..++|+.|++++|..
T Consensus 375 l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 437 (606)
T 3t6q_A 375 LSHLQSLNLSYNEPLSLKT-EAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437 (606)
T ss_dssp CTTCCEEECCSCSCEEECT-TTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred CCCCCEEECCCCcCCcCCH-HHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc
Confidence 4555555555543322100 122345666666666553211110 1 235677777776643
No 83
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.40 E-value=2.9e-07 Score=81.60 Aligned_cols=126 Identities=16% Similarity=0.184 Sum_probs=88.3
Q ss_pred CCceEEEEEeccCCCcccCCCcc-hhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQM-VLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL 172 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 172 (286)
.+++.+++... .-..+|.. +..+++|++|+++++.+....+ ....+++|++|+|.++.++...- ..+..+++|
T Consensus 45 ~~l~~l~l~~~----~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L 119 (390)
T 3o6n_A 45 NNQKIVTFKNS----TMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLL 119 (390)
T ss_dssp CCCSEEEEESC----EESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTC
T ss_pred CCceEEEecCC----chhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH-HHhcCCCCC
Confidence 68889999821 12345554 4578999999999988744322 45679999999999988443211 224678999
Q ss_pred ceEEeeeccccc---e-eecccCCceEEecCcccChhhHHHHHhcCCCccEEeccccc
Q 042585 173 QHLEFVRYNNLV---N-VSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCN 226 (286)
Q Consensus 173 e~L~l~~c~~~~---~-~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~ 226 (286)
+.|+++++.... . +..+++|++|++.++.++.-.. .....+++|++|+++++.
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTSSCTTCCEEECCSSC
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccCh-hhccCCCCCCEEECCCCc
Confidence 999999875431 1 2338999999999886653211 234678999999998864
No 84
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.39 E-value=2.3e-07 Score=80.08 Aligned_cols=13 Identities=8% Similarity=-0.013 Sum_probs=6.8
Q ss_pred CCCccEEEcceee
Q 042585 144 LLSLRKLHLSDVY 156 (286)
Q Consensus 144 ~~~L~~L~L~~~~ 156 (286)
+++|++|+|+++.
T Consensus 119 ~~~L~~L~l~~N~ 131 (317)
T 3o53_A 119 GQGKKNIYLANNK 131 (317)
T ss_dssp CSSCEEEECCSSC
T ss_pred cCCCCEEECCCCC
Confidence 4555555555554
No 85
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.39 E-value=5e-07 Score=82.09 Aligned_cols=131 Identities=18% Similarity=0.128 Sum_probs=99.9
Q ss_pred cchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc-ceeecccCCce
Q 042585 116 QMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL-VNVSSCKNLKH 194 (286)
Q Consensus 116 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~-~~~~~~~~L~~ 194 (286)
..+..+++|++|+++++.+... +....+++|++|+|+++.++.-. +..+++|+.|+++++... ..+..+++|++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~ 110 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-TGIEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNKLTNLDVTPLTKLTY 110 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-TTGGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCCCTTCTTCCE
T ss_pred cChhHcCCCCEEEccCCCcccC-hhhcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCCCceeecCCCCcCCE
Confidence 3566789999999999988554 45667999999999999955432 567999999999987532 23444999999
Q ss_pred EEecCcccChhhHHHHHhcCCCccEEecccccCccccccc-cccccEEEeecccCCccccccc
Q 042585 195 LDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESITIS-SLRLKKLIINTCESNTIFSFGS 256 (286)
Q Consensus 195 L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~-~p~L~~L~ls~c~~~~~~~~~~ 256 (286)
|+++++.++.- . ...+++|++|+++++.- +.+.+. .++|+.|++++|...+...+..
T Consensus 111 L~L~~N~l~~l---~-~~~l~~L~~L~l~~N~l-~~l~l~~l~~L~~L~l~~n~~~~~~~~~~ 168 (457)
T 3bz5_A 111 LNCDTNKLTKL---D-VSQNPLLTYLNCARNTL-TEIDVSHNTQLTELDCHLNKKITKLDVTP 168 (457)
T ss_dssp EECCSSCCSCC---C-CTTCTTCCEEECTTSCC-SCCCCTTCTTCCEEECTTCSCCCCCCCTT
T ss_pred EECCCCcCCee---c-CCCCCcCCEEECCCCcc-ceeccccCCcCCEEECCCCCccccccccc
Confidence 99998877653 1 46889999999999742 333443 5799999999997666654433
No 86
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.39 E-value=8.8e-08 Score=84.74 Aligned_cols=126 Identities=12% Similarity=0.112 Sum_probs=94.6
Q ss_pred cCCccEEEEeceeecc-----CCcCc-ccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----ceee---
Q 042585 121 SKSIKVLTLQNYKLES-----LGNDD-VKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVS--- 187 (286)
Q Consensus 121 ~~~L~~L~L~~~~~~~-----~~~~~-~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~--- 187 (286)
.++|++|+|++|.+.. +.... ...++|++|+|+++.+++.++..+...+++|+.|++++|... ..+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3689999999988732 10011 124799999999999999999998888999999999988542 1121
Q ss_pred --cccCCceEEecCcccChhhHHHH---HhcCCCccEEecccccCcccccc--------ccccccEEEeeccc
Q 042585 188 --SCKNLKHLDLCDGSYTDEWLNSQ---ISGLPLLEQLHISLCNNIESITI--------SSLRLKKLIINTCE 247 (286)
Q Consensus 188 --~~~~L~~L~l~~~~~~~~~l~~~---~~~~p~L~~L~l~~c~~~~~~~i--------~~p~L~~L~ls~c~ 247 (286)
..++|++|++++|.+++.+...+ ...+++|++|++++|. +++.++ ..++|+.|++++|.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 15889999999998887655444 3678999999999985 333321 23689999999984
No 87
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.37 E-value=4.6e-07 Score=88.52 Aligned_cols=127 Identities=17% Similarity=0.088 Sum_probs=73.0
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceee-ccC-CcCcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKL-ESL-GNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL 172 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 172 (286)
.++++|++++.. -....|..+..+++|++|+|++|.. ... .....++++|++|+|+++.+.... ...+..+++|
T Consensus 24 ~~l~~LdLs~N~---i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~-p~~~~~l~~L 99 (844)
T 3j0a_A 24 NTTERLLLSFNY---IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH-PDAFQGLFHL 99 (844)
T ss_dssp TTCCEEEEESCC---CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC-TTSSCSCSSC
T ss_pred CCcCEEECCCCc---CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC-HhHccCCccc
Confidence 577888888221 1122244556677788888877633 111 123456777888888777633221 1123467777
Q ss_pred ceEEeeeccccc----e--eecccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585 173 QHLEFVRYNNLV----N--VSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 173 e~L~l~~c~~~~----~--~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
+.|++++|.... . +..+++|++|+++++.++..........+++|++|+++++
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 777777664321 1 3337777777777765543211123456777777777775
No 88
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.37 E-value=3.5e-07 Score=84.66 Aligned_cols=128 Identities=18% Similarity=0.173 Sum_probs=87.7
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCC-cCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLG-NDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ 173 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 173 (286)
..+++|+++... -....|..+..+++|++|+++++.+.... .....+++|++|+|+++.++...-. .+..+++|+
T Consensus 26 ~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~ 101 (549)
T 2z81_A 26 AAMKSLDLSFNK---ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS-WFGPLSSLK 101 (549)
T ss_dssp TTCCEEECCSSC---CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH-HHTTCTTCC
T ss_pred CCccEEECcCCc---cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH-HhccCCCCc
Confidence 478899998222 11223456678999999999999885432 2456799999999999985543322 246799999
Q ss_pred eEEeeecccc-----ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEeccccc
Q 042585 174 HLEFVRYNNL-----VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCN 226 (286)
Q Consensus 174 ~L~l~~c~~~-----~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~ 226 (286)
.|+++++... ..+..+++|++|++.++.............+++|++|+++++.
T Consensus 102 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 102 YLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp EEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred EEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence 9999987532 1233388999999987752211111234578889999988764
No 89
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.37 E-value=3.6e-07 Score=77.03 Aligned_cols=147 Identities=21% Similarity=0.229 Sum_probs=77.9
Q ss_pred CCceEEEEEeccCCCcccCCC-cchhccCCccEEEEeceeeccCC-cCcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585 95 RNVEELEVEHLRRLDTWNSLP-QMVLRSKSIKVLTLQNYKLESLG-NDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL 172 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 172 (286)
.++++|+++... -..++ ..+..+++|++|+++++.+.... .....+++|++|++.++.++...-. -+..+++|
T Consensus 52 ~~L~~L~l~~n~----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L 126 (276)
T 2z62_A 52 PELQVLDLSRCE----IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF-PIGHLKTL 126 (276)
T ss_dssp TTCSEEECTTCC----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC-CCTTCTTC
T ss_pred cCCcEEECCCCc----CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCch-hcccCCCC
Confidence 567777776211 11222 24556778888888887664322 2344577888888877763321110 14567788
Q ss_pred ceEEeeeccccc-----eeecccCCceEEecCcccCh---hhHHHHHhcCCCcc-EEecccccCc--cccccccccccEE
Q 042585 173 QHLEFVRYNNLV-----NVSSCKNLKHLDLCDGSYTD---EWLNSQISGLPLLE-QLHISLCNNI--ESITISSLRLKKL 241 (286)
Q Consensus 173 e~L~l~~c~~~~-----~~~~~~~L~~L~l~~~~~~~---~~l~~~~~~~p~L~-~L~l~~c~~~--~~~~i~~p~L~~L 241 (286)
+.|+++++.... .+..+++|++|+++++.++. ..+ .-....+.|. +|+++++.-- .......++|+.|
T Consensus 127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L 205 (276)
T 2z62_A 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKEL 205 (276)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG-HHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEE
T ss_pred CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHh-hhhhhccccceeeecCCCcccccCccccCCCcccEE
Confidence 888887654321 22236788888887765543 222 1112233332 5666664311 1111222366666
Q ss_pred Eeeccc
Q 042585 242 IINTCE 247 (286)
Q Consensus 242 ~ls~c~ 247 (286)
+++++.
T Consensus 206 ~L~~n~ 211 (276)
T 2z62_A 206 ALDTNQ 211 (276)
T ss_dssp ECCSSC
T ss_pred ECCCCc
Confidence 666654
No 90
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.36 E-value=3.8e-06 Score=73.35 Aligned_cols=61 Identities=20% Similarity=0.144 Sum_probs=35.8
Q ss_pred ccCCceEEecCcccChhhHHH---HHhcCCCccEEecccccCccccc----cccccccEEEeecccCCc
Q 042585 189 CKNLKHLDLCDGSYTDEWLNS---QISGLPLLEQLHISLCNNIESIT----ISSLRLKKLIINTCESNT 250 (286)
Q Consensus 189 ~~~L~~L~l~~~~~~~~~l~~---~~~~~p~L~~L~l~~c~~~~~~~----i~~p~L~~L~ls~c~~~~ 250 (286)
.+.++.+++.++.+++..+.. ....+++|++|+++++.- +.+. -..++|+.|++++++...
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL-KSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC-CccCHHHHhcCCCCCEEEeeCCCccC
Confidence 445555555555555443322 245778888888888632 2222 124788888888775443
No 91
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.36 E-value=9.3e-07 Score=82.96 Aligned_cols=105 Identities=19% Similarity=0.162 Sum_probs=53.5
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcC-cccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGND-DVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ 173 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 173 (286)
.+++.|++.... .....|..+..+++|++|+|+++.+....+. ...+++|++|+|+++.++.- -..++..+++|+
T Consensus 75 ~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~ 150 (597)
T 3oja_B 75 RQVELLNLNDLQ---IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLT 150 (597)
T ss_dssp CCCSEEECTTSC---CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCC
T ss_pred CCCcEEECCCCC---CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC-CHHHhccCCCCC
Confidence 566777766111 0111122445666777777776666432222 34566677777766663311 111234566666
Q ss_pred eEEeeeccccc----eeecccCCceEEecCcccC
Q 042585 174 HLEFVRYNNLV----NVSSCKNLKHLDLCDGSYT 203 (286)
Q Consensus 174 ~L~l~~c~~~~----~~~~~~~L~~L~l~~~~~~ 203 (286)
.|+++++.... .+..+++|+.|+++++.++
T Consensus 151 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 151 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp EEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred EEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 66666553221 1222566666666655544
No 92
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.36 E-value=1.2e-06 Score=75.79 Aligned_cols=146 Identities=16% Similarity=0.139 Sum_probs=75.8
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH 174 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 174 (286)
.++++|++.... -....|..+..+++|++|+++++.+... + ...+++|++|++.++.++...- ..+..+++|+.
T Consensus 76 ~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~l-~-~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~ 149 (330)
T 1xku_A 76 KNLHTLILINNK---ISKISPGAFAPLVKLERLYLSKNQLKEL-P-EKMPKTLQELRVHENEITKVRK-SVFNGLNQMIV 149 (330)
T ss_dssp TTCCEEECCSSC---CCCBCTTTTTTCTTCCEEECCSSCCSBC-C-SSCCTTCCEEECCSSCCCBBCH-HHHTTCTTCCE
T ss_pred CCCCEEECCCCc---CCeeCHHHhcCCCCCCEEECCCCcCCcc-C-hhhcccccEEECCCCcccccCH-hHhcCCccccE
Confidence 567777777211 1122245566777888888877766432 1 1223667777776665332211 22345666666
Q ss_pred EEeeecccc------ceeecc---------------------cCCceEEecCcccChhhHHHHHhcCCCccEEecccccC
Q 042585 175 LEFVRYNNL------VNVSSC---------------------KNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNN 227 (286)
Q Consensus 175 L~l~~c~~~------~~~~~~---------------------~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~ 227 (286)
|+++++... ..+..+ ++|++|+++++.++.... .....+++|++|+++++.-
T Consensus 150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l 228 (330)
T 1xku_A 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA-ASLKGLNNLAKLGLSFNSI 228 (330)
T ss_dssp EECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECT-GGGTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcC
Confidence 666554321 011113 455555555554432111 2234667777777777632
Q ss_pred cccc--cc-ccccccEEEeeccc
Q 042585 228 IESI--TI-SSLRLKKLIINTCE 247 (286)
Q Consensus 228 ~~~~--~i-~~p~L~~L~ls~c~ 247 (286)
-... .+ ..++|+.|+++++.
T Consensus 229 ~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 229 SAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp CEECTTTGGGSTTCCEEECCSSC
T ss_pred ceeChhhccCCCCCCEEECCCCc
Confidence 1111 11 23678888888774
No 93
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.35 E-value=4.3e-07 Score=83.18 Aligned_cols=124 Identities=19% Similarity=0.093 Sum_probs=61.3
Q ss_pred CCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccce--eecccCCceEEec
Q 042585 122 KSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVN--VSSCKNLKHLDLC 198 (286)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~--~~~~~~L~~L~l~ 198 (286)
++|+.|+|+++.+....+ ....+++|++|+|+++.++......+...+++|+.|+++++..... ...+++|+.|+++
T Consensus 120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls 199 (487)
T 3oja_A 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLS 199 (487)
T ss_dssp SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECC
T ss_pred CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECC
Confidence 455666666655533212 2334566666666666544333333334566666666665532211 1115666666666
Q ss_pred CcccChhhHHHHHhcCCCccEEecccccCccccc--c-ccccccEEEeecccC
Q 042585 199 DGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT--I-SSLRLKKLIINTCES 248 (286)
Q Consensus 199 ~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~--i-~~p~L~~L~ls~c~~ 248 (286)
++.++.-. .-...+++|+.|+++++.-. .+. + ..++|+.|+++++..
T Consensus 200 ~N~l~~~~--~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 200 SNKLAFMG--PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp SSCCCEEC--GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCB
T ss_pred CCCCCCCC--HhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCC
Confidence 65544311 11345566666666665321 111 1 125666666666543
No 94
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.34 E-value=6.3e-07 Score=70.41 Aligned_cols=126 Identities=14% Similarity=0.108 Sum_probs=89.0
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH 174 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 174 (286)
.++++|+++... -..+|......++|+.|+++++.+... +....+++|++|+|+++.++.-. ..+...+|+|+.
T Consensus 19 ~~L~~L~l~~n~----l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~ 92 (176)
T 1a9n_A 19 VRDRELDLRGYK----IPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTE 92 (176)
T ss_dssp TSCEEEECTTSC----CCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTTCCE
T ss_pred CCceEEEeeCCC----CchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccC-cchhhcCCCCCE
Confidence 478888888222 113444333344999999999988554 55667999999999999854321 123467999999
Q ss_pred EEeeecccc--c---eeecccCCceEEecCcccChhh--HHHHHhcCCCccEEeccccc
Q 042585 175 LEFVRYNNL--V---NVSSCKNLKHLDLCDGSYTDEW--LNSQISGLPLLEQLHISLCN 226 (286)
Q Consensus 175 L~l~~c~~~--~---~~~~~~~L~~L~l~~~~~~~~~--l~~~~~~~p~L~~L~l~~c~ 226 (286)
|+++++... . .+..+++|+.|++.++.++... -..+...+|+|++|+++++.
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 999987542 2 2334899999999988765421 12357789999999998864
No 95
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.34 E-value=6.6e-07 Score=83.03 Aligned_cols=84 Identities=24% Similarity=0.098 Sum_probs=44.2
Q ss_pred ccCCCccEEEcceeeeChHH-HHHHHhcCCCcceEEeeecccc---ceeecccCCceEEecCcccChhhHHHHHhcCCCc
Q 042585 142 VKLLSLRKLHLSDVYADDQV-MNNLFAQSPLLQHLEFVRYNNL---VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLL 217 (286)
Q Consensus 142 ~~~~~L~~L~L~~~~~~~~~-l~~l~~~cp~Le~L~l~~c~~~---~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L 217 (286)
..+++|++|+++++.++... .......+++|+.|++++|... ..+..+++|++|++.++.+...........+++|
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 45777777777777633211 1122456788888888766432 1133366677776666544321100122345555
Q ss_pred cEEecccc
Q 042585 218 EQLHISLC 225 (286)
Q Consensus 218 ~~L~l~~c 225 (286)
++|++++|
T Consensus 424 ~~L~l~~n 431 (570)
T 2z63_A 424 IYLDISHT 431 (570)
T ss_dssp CEEECTTS
T ss_pred CEEeCcCC
Confidence 55555554
No 96
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.32 E-value=5.3e-07 Score=85.29 Aligned_cols=126 Identities=11% Similarity=0.016 Sum_probs=80.8
Q ss_pred CCceEEEEEeccCCCcccC-----------------CCcchh--ccCCccEEEEeceeecc-CCcCcccCCCccEEEcce
Q 042585 95 RNVEELEVEHLRRLDTWNS-----------------LPQMVL--RSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSD 154 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~-----------------l~~~~~--~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~ 154 (286)
.++++|+++... -... +|..+. .+++|++|+|++|.+.. .+....++++|++|+|++
T Consensus 206 ~~L~~L~Ls~n~---l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 206 TKLRQFYMGNSP---FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp TTCCEEEEESCC---CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred cCCCEEECcCCc---cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence 589999999221 1111 888888 99999999999998733 334456799999999999
Q ss_pred ee-eCh-H---HHHHH--HhcCCCcceEEeeecccc--c---eeecccCCceEEecCcccChhhHHHHHhcCCCccEEec
Q 042585 155 VY-ADD-Q---VMNNL--FAQSPLLQHLEFVRYNNL--V---NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHI 222 (286)
Q Consensus 155 ~~-~~~-~---~l~~l--~~~cp~Le~L~l~~c~~~--~---~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l 222 (286)
+. ++. . .+..+ ...+++|+.|+++++... . .+..+++|+.|++.++.++.. + .....+++|++|++
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~-i-p~~~~l~~L~~L~L 360 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK-L-PAFGSEIKLASLNL 360 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEE-C-CCCEEEEEESEEEC
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccc-h-hhhCCCCCCCEEEC
Confidence 98 776 2 22222 123588888888876433 1 123367777777776655421 1 02234455666665
Q ss_pred ccc
Q 042585 223 SLC 225 (286)
Q Consensus 223 ~~c 225 (286)
+++
T Consensus 361 ~~N 363 (636)
T 4eco_A 361 AYN 363 (636)
T ss_dssp CSS
T ss_pred CCC
Confidence 554
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.30 E-value=7.6e-07 Score=72.71 Aligned_cols=125 Identities=13% Similarity=0.054 Sum_probs=73.3
Q ss_pred CCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----ceeecccCCceEE
Q 042585 122 KSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVSSCKNLKHLD 196 (286)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~~~~~L~~L~ 196 (286)
++|+.|+++++.+....+ ....+++|++|+|+++.++.-. ...+..+++|+.|+++++... ..+..+++|+.|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 577888888877644222 3445778888888877743211 112355778888888765432 1123367888888
Q ss_pred ecCcccChhhHHHHHhcCCCccEEecccccCc--ccccc-ccccccEEEeecccC
Q 042585 197 LCDGSYTDEWLNSQISGLPLLEQLHISLCNNI--ESITI-SSLRLKKLIINTCES 248 (286)
Q Consensus 197 l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~--~~~~i-~~p~L~~L~ls~c~~ 248 (286)
++++.++.-.. .....+++|++|+++++.-- ..-.+ ..++|+.|++++.+.
T Consensus 111 L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 111 LNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 88766543211 23346778888888776321 11112 136777787776543
No 98
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.30 E-value=8.1e-07 Score=86.73 Aligned_cols=147 Identities=14% Similarity=0.052 Sum_probs=97.2
Q ss_pred CCceEEEEEeccCCCcc-------c---------CCCcchh--ccCCccEEEEeceeecc-CCcCcccCCCccEEEccee
Q 042585 95 RNVEELEVEHLRRLDTW-------N---------SLPQMVL--RSKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDV 155 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~-------~---------~l~~~~~--~~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~ 155 (286)
.++++|+++... ... . .+|..+. .+++|+.|+|++|.+.. .+.....+++|++|+|+++
T Consensus 448 ~~L~~L~Ls~N~--Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 448 TKLQIIYFANSP--FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp TTCCEEEEESCC--CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred CCCCEEECcCCc--CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 689999999221 011 1 2788877 99999999999987633 3344567999999999999
Q ss_pred e-eCh----HHHHHHH---hcCCCcceEEeeecccc--c---eeecccCCceEEecCcccChhhHHHHHhcCCCccEEec
Q 042585 156 Y-ADD----QVMNNLF---AQSPLLQHLEFVRYNNL--V---NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHI 222 (286)
Q Consensus 156 ~-~~~----~~l~~l~---~~cp~Le~L~l~~c~~~--~---~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l 222 (286)
. ++. ..+..+. ..+|+|+.|+++++... . .+..+++|+.|+++++.++. +. ....+++|+.|++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~--lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH--LE-AFGTNVKLTDLKL 602 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCB--CC-CCCTTSEESEEEC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCccc--ch-hhcCCCcceEEEC
Confidence 8 775 2233322 45679999999887543 1 23337889999998876652 21 3456778888888
Q ss_pred ccccCccccc--c-cccc-ccEEEeeccc
Q 042585 223 SLCNNIESIT--I-SSLR-LKKLIINTCE 247 (286)
Q Consensus 223 ~~c~~~~~~~--i-~~p~-L~~L~ls~c~ 247 (286)
+++.-. .+. + ..++ |+.|+++++.
T Consensus 603 s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp CSSCCS-CCCTTSCEECTTCCEEECCSSC
T ss_pred cCCccc-cchHHHhhccccCCEEECcCCC
Confidence 776422 221 1 1244 6666666654
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.30 E-value=9.6e-07 Score=71.19 Aligned_cols=133 Identities=20% Similarity=0.178 Sum_probs=91.6
Q ss_pred cCCCcchhccCCccEEEEeceeeccCCcC-cccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc----ee
Q 042585 112 NSLPQMVLRSKSIKVLTLQNYKLESLGND-DVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV----NV 186 (286)
Q Consensus 112 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~----~~ 186 (286)
..+|..+ .++|++|+++++.+....+. ...+++|++|+|.++.++.-. ...+..+++|+.|+++++.... .+
T Consensus 20 ~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 96 (208)
T 2o6s_A 20 TSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP-NGVFNKLTSLTYLNLSTNQLQSLPNGVF 96 (208)
T ss_dssp SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC-hhhcCCCCCcCEEECCCCcCCccCHhHh
Confidence 3445433 46899999999988553233 457999999999998854221 1234678999999999875331 13
Q ss_pred ecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc---c-ccccccEEEeecccCC
Q 042585 187 SSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT---I-SSLRLKKLIINTCESN 249 (286)
Q Consensus 187 ~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i-~~p~L~~L~ls~c~~~ 249 (286)
..+++|+.|++.++.++.-. ......+++|++|+++++.- +.+. + ..++|+.|+++++...
T Consensus 97 ~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 97 DKLTQLKELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQL-KSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp TTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred cCccCCCEEEcCCCcCcccC-HhHhccCCcCCEEECCCCcc-ceeCHHHhccCCCccEEEecCCCee
Confidence 34899999999988765321 12346789999999999742 2221 2 2479999999987543
No 100
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.30 E-value=5.4e-07 Score=74.06 Aligned_cols=101 Identities=21% Similarity=0.224 Sum_probs=44.2
Q ss_pred CCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc----eeecccCCceEE
Q 042585 122 KSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV----NVSSCKNLKHLD 196 (286)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~----~~~~~~~L~~L~ 196 (286)
++|+.|+|+++.+....+ ....+++|++|+|+++.++.-. ...+..+++|+.|+++++.... .+..+++|+.|+
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 118 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence 455555555555533211 2234555555555555532110 0112345555555555442211 112255555555
Q ss_pred ecCcccChhhHHHHHhcCCCccEEecccc
Q 042585 197 LCDGSYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 197 l~~~~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
++++.++. +......+++|++|+++++
T Consensus 119 Ls~N~l~~--lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 119 MCCNKLTE--LPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp CCSSCCCS--CCTTGGGCTTCSEEECCSS
T ss_pred ccCCcccc--cCcccccCCCCCEEECCCC
Confidence 55544331 1011245555555555554
No 101
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.30 E-value=8.7e-07 Score=86.54 Aligned_cols=132 Identities=16% Similarity=0.185 Sum_probs=65.6
Q ss_pred CCCcchh-ccCCccEEEEeceeeccCCcCcc--------cCCCccEEEcceeeeChHHHHHHHh--cCCCcceEEeeecc
Q 042585 113 SLPQMVL-RSKSIKVLTLQNYKLESLGNDDV--------KLLSLRKLHLSDVYADDQVMNNLFA--QSPLLQHLEFVRYN 181 (286)
Q Consensus 113 ~l~~~~~-~~~~L~~L~L~~~~~~~~~~~~~--------~~~~L~~L~L~~~~~~~~~l~~l~~--~cp~Le~L~l~~c~ 181 (286)
.+|..++ .+++|+.|+|+++.+........ ++++|++|+|+++.++ .+...+. .+|+|+.|+++++.
T Consensus 687 ~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--~lp~~l~~~~l~~L~~L~Ls~N~ 764 (876)
T 4ecn_A 687 KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT--SLSDDFRATTLPYLSNMDVSYNC 764 (876)
T ss_dssp SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC--CCCGGGSTTTCTTCCEEECCSSC
T ss_pred ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc--cchHHhhhccCCCcCEEEeCCCC
Confidence 3454444 45666666666665532211111 1226666666666643 1222222 56667777776553
Q ss_pred ccc---eeecccCCceEEecC------cccChhhHHHHHhcCCCccEEecccccCccccccc-cccccEEEeecccC
Q 042585 182 NLV---NVSSCKNLKHLDLCD------GSYTDEWLNSQISGLPLLEQLHISLCNNIESITIS-SLRLKKLIINTCES 248 (286)
Q Consensus 182 ~~~---~~~~~~~L~~L~l~~------~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~-~p~L~~L~ls~c~~ 248 (286)
... .+..+++|+.|++++ +.+... +......+++|+.|++++|.- +.+... .++|+.|++++|+.
T Consensus 765 L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~-ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 765 FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ-WPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPN 839 (876)
T ss_dssp CSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCC-CCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTT
T ss_pred CCccchhhhcCCCCCEEECCCCCCccccccccc-ChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCC
Confidence 221 122266677777654 222211 001234567777777776643 333211 25677777777653
No 102
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.30 E-value=5.7e-07 Score=76.65 Aligned_cols=146 Identities=17% Similarity=0.087 Sum_probs=94.2
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH 174 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 174 (286)
.++++|+++... -..++.. ..+++|+.|+++++.+.........+++|++|+|+++.++.-. ...+..+++|+.
T Consensus 55 ~~L~~L~L~~n~----l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~-~~~~~~l~~L~~ 128 (290)
T 1p9a_G 55 TRLTQLNLDRAE----LTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP-LGALRGLGELQE 128 (290)
T ss_dssp TTCCEEECTTSC----CCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCC-SSTTTTCTTCCE
T ss_pred CCCCEEECCCCc----cCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccC-HHHHcCCCCCCE
Confidence 578888887211 1122222 5678899999999888654344567899999999988844211 112456889999
Q ss_pred EEeeeccccc----eeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccC--ccccccccccccEEEeeccc
Q 042585 175 LEFVRYNNLV----NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNN--IESITISSLRLKKLIINTCE 247 (286)
Q Consensus 175 L~l~~c~~~~----~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~--~~~~~i~~p~L~~L~ls~c~ 247 (286)
|+++++.... .+..+++|+.|+++++.++.-. ..+...+++|++|+++++.- +..-....+.|+.|.+++.+
T Consensus 129 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP-AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred EECCCCCCCccChhhcccccCCCEEECCCCcCCccC-HHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 9998764321 1223789999999987665311 12345688999999988642 21112234678888887544
No 103
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.30 E-value=4.8e-07 Score=81.71 Aligned_cols=129 Identities=19% Similarity=0.121 Sum_probs=87.7
Q ss_pred ccCCccEEEEeceeeccC-CcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc----eeecccCCce
Q 042585 120 RSKSIKVLTLQNYKLESL-GNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV----NVSSCKNLKH 194 (286)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~----~~~~~~~L~~ 194 (286)
.+++|+.|+++++.+... ......+++|++|+|+++.+++..-. .+..+++|+.|+++++.... .+..+++|+.
T Consensus 273 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 351 (455)
T 3v47_A 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN-AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV 351 (455)
T ss_dssp TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred cccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh-HhcCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence 347899999999877442 23355689999999999885432211 24568999999999875431 2233889999
Q ss_pred EEecCcccChhhHHHHHhcCCCccEEecccccCccccc----cccccccEEEeecccCCcc
Q 042585 195 LDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT----ISSLRLKKLIINTCESNTI 251 (286)
Q Consensus 195 L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~----i~~p~L~~L~ls~c~~~~~ 251 (286)
|+++++.++.... .....+++|++|+++++.- +.+. -..++|+.|++++++....
T Consensus 352 L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 352 LDLSYNHIRALGD-QSFLGLPNLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp EECCSSCCCEECT-TTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred EECCCCcccccCh-hhccccccccEEECCCCcc-ccCCHhHhccCCcccEEEccCCCcccC
Confidence 9999887654211 2345789999999998742 2222 1347899999988765444
No 104
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.29 E-value=1e-06 Score=69.96 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=17.7
Q ss_pred CCCccEEEcceeeeChHHHHHHH---hcCCCcceEEeeec
Q 042585 144 LLSLRKLHLSDVYADDQVMNNLF---AQSPLLQHLEFVRY 180 (286)
Q Consensus 144 ~~~L~~L~L~~~~~~~~~l~~l~---~~cp~Le~L~l~~c 180 (286)
.++|++|+|+++.+++.+...+. ..++.|++|+|++|
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 44555555555555554433332 23445555555544
No 105
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.28 E-value=1.6e-06 Score=74.98 Aligned_cols=123 Identities=15% Similarity=0.147 Sum_probs=80.8
Q ss_pred CCceEEEEEeccCCCcccCCCc-chhccCCccEEEEeceeeccC-CcCcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQ-MVLRSKSIKVLTLQNYKLESL-GNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL 172 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 172 (286)
..++.|+++... -..++. .+..+++|++|+|+++.+... ......+++|++|+|+++.++.-. ...+++|
T Consensus 52 ~~l~~L~L~~n~----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~~~L 123 (330)
T 1xku_A 52 PDTALLDLQNNK----ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP----EKMPKTL 123 (330)
T ss_dssp TTCCEEECCSSC----CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCC----SSCCTTC
T ss_pred CCCeEEECCCCc----CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccC----hhhcccc
Confidence 467888887221 122333 566789999999999888543 234556899999999988744211 1234889
Q ss_pred ceEEeeeccccc----eeecccCCceEEecCcccChhh-HHHHHhcCCCccEEecccc
Q 042585 173 QHLEFVRYNNLV----NVSSCKNLKHLDLCDGSYTDEW-LNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 173 e~L~l~~c~~~~----~~~~~~~L~~L~l~~~~~~~~~-l~~~~~~~p~L~~L~l~~c 225 (286)
++|+++++.... .+..+++|+.|++.++.+.... .......+++|++|+++++
T Consensus 124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n 181 (330)
T 1xku_A 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181 (330)
T ss_dssp CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC
Confidence 999998775431 1333899999999987664311 1123456788888888775
No 106
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.28 E-value=4.5e-07 Score=86.16 Aligned_cols=106 Identities=22% Similarity=0.160 Sum_probs=50.3
Q ss_pred hhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----ceeecccCC
Q 042585 118 VLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVSSCKNL 192 (286)
Q Consensus 118 ~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~~~~~L 192 (286)
+..+++|++|+|+++.+....+ ....+++|++|+|+++.++.-. ...+..|++|++|+++++... ..+..+++|
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccC-hhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence 4456666666666655533212 2234666666666665522110 011334666666666654321 112225566
Q ss_pred ceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585 193 KHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 193 ~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
++|++.++.++.... .....+++|++|+++++
T Consensus 124 ~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKL-GTQVQLENLQELLLSNN 155 (680)
T ss_dssp CEEECCSSCCSCCCC-CSSSCCTTCCEEECCSS
T ss_pred CEEECCCCcccccCc-hhhcccccCCEEEccCC
Confidence 666666554432110 11234556666666554
No 107
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.27 E-value=1.2e-06 Score=82.82 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=19.9
Q ss_pred cCCCcceEEeeeccccc----eeecccCCceEEecCcc-cCh
Q 042585 168 QSPLLQHLEFVRYNNLV----NVSSCKNLKHLDLCDGS-YTD 204 (286)
Q Consensus 168 ~cp~Le~L~l~~c~~~~----~~~~~~~L~~L~l~~~~-~~~ 204 (286)
.+++|+.|++++|.... .+..+++|+.|+++++. ++.
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~ 288 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc
Confidence 56666666666654321 12225666666666654 443
No 108
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.26 E-value=5.2e-07 Score=76.47 Aligned_cols=38 Identities=26% Similarity=0.529 Sum_probs=34.9
Q ss_pred cccCCCCCHHHHHHHHccCChhhHH-HhhhhhhhhHhhh
Q 042585 14 VDRISALPQPILQLIMSFLPFKQVV-QICMVSKVWLQAW 51 (286)
Q Consensus 14 ~d~i~~LPdeil~~Ils~L~~~d~~-~~~~vskrW~~lw 51 (286)
...+..||+|++.+||++||.++++ +++.|||+|+.+.
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~ 86 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV 86 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence 4578899999999999999999999 9999999999863
No 109
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.26 E-value=5.5e-07 Score=74.93 Aligned_cols=127 Identities=17% Similarity=0.084 Sum_probs=89.1
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ 173 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 173 (286)
.++++|+++... .....+..+..+++|+.|+|+++.+....+ ....+++|++|+|+++.++.-. ...+..+++|+
T Consensus 59 ~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~ 134 (251)
T 3m19_A 59 TKLTWLNLDYNQ---LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP-SGVFDRLTKLK 134 (251)
T ss_dssp TTCCEEECTTSC---CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred ccCCEEECCCCc---CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcC-hhHhccCCccc
Confidence 689999998221 112223345678999999999998855333 3457999999999999854211 12245789999
Q ss_pred eEEeeeccccc----eeecccCCceEEecCcccChhhHHHHHhcCCCccEEeccccc
Q 042585 174 HLEFVRYNNLV----NVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCN 226 (286)
Q Consensus 174 ~L~l~~c~~~~----~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~ 226 (286)
.|+++++.... .+..+++|+.|++.++.++.-.. .....+++|++|++.++.
T Consensus 135 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 135 ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH-GAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred EEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCc
Confidence 99999874331 23338999999999887664211 234678999999999964
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.26 E-value=4.8e-07 Score=73.88 Aligned_cols=126 Identities=20% Similarity=0.185 Sum_probs=87.7
Q ss_pred CCceEEEEEeccCCCcccCCCc-chhccCCccEEEEeceeeccC-CcCcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQ-MVLRSKSIKVLTLQNYKLESL-GNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL 172 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 172 (286)
.++++|++.... -..++. .+..+++|+.|+|+++.+... .....++++|++|+|+++.++.-. ..++..+++|
T Consensus 32 ~~l~~L~l~~n~----i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQNT----IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP-KSLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCSSC----CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred cCCCEEECCCCc----CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccC-HhHccCCCCC
Confidence 478888888211 112333 456789999999999888543 234567999999999999844211 1234678999
Q ss_pred ceEEeeecccc----ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEeccccc
Q 042585 173 QHLEFVRYNNL----VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCN 226 (286)
Q Consensus 173 e~L~l~~c~~~----~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~ 226 (286)
+.|+++++... ..+..+++|+.|++.++.++.-.. .....+++|++|++++++
T Consensus 107 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCC
Confidence 99999977543 223348999999999887654211 234568999999999954
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.25 E-value=1.1e-06 Score=72.19 Aligned_cols=127 Identities=17% Similarity=0.052 Sum_probs=85.0
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcC-cccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGND-DVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ 173 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 173 (286)
.+++.|+++... .....|..+..+++|++|+|+++.+....+. ...+++|++|+|+++.++.-. ...+..+++|+
T Consensus 40 ~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~ 115 (229)
T 3e6j_A 40 TNAQILYLHDNQ---ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP-SAVFDRLVHLK 115 (229)
T ss_dssp TTCSEEECCSSC---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred CCCCEEEcCCCc---cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccC-hhHhCcchhhC
Confidence 467888887221 1122244566788999999999888543333 356899999999998844211 12245689999
Q ss_pred eEEeeecccc---ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEeccccc
Q 042585 174 HLEFVRYNNL---VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCN 226 (286)
Q Consensus 174 ~L~l~~c~~~---~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~ 226 (286)
.|+++++... ..+..+++|+.|+++++.++.-.- .....+++|++|++.+++
T Consensus 116 ~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 116 ELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp EEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred eEeccCCcccccCcccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCC
Confidence 9999876433 122238899999999876653211 334678899999998854
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.25 E-value=8.1e-07 Score=72.53 Aligned_cols=106 Identities=12% Similarity=0.120 Sum_probs=48.0
Q ss_pred hhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----ceeecccCC
Q 042585 118 VLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVSSCKNL 192 (286)
Q Consensus 118 ~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~~~~~L 192 (286)
+..+++|++|+|+++.+....+ ....+++|++|+|+++.++... ...+..+++|+.|+++++... ..+..+++|
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 131 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ-HKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV 131 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-GGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC
T ss_pred hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccC-HhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC
Confidence 3455566666665555533212 2334555666666655522111 011334556666666544321 112225556
Q ss_pred ceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585 193 KHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 193 ~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
+.|+++++.++.-.. .....+++|++|+++++
T Consensus 132 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 132 RLLSLYDNQITTVAP-GAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp SEEECTTSCCCCBCT-TTTTTCTTCCEEECCSC
T ss_pred CEEECCCCcCCEECH-HHhcCCCCCCEEEecCc
Confidence 666665554332100 12234555555555553
No 113
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.24 E-value=4.2e-07 Score=85.19 Aligned_cols=126 Identities=21% Similarity=0.207 Sum_probs=81.8
Q ss_pred CCceEEEEEeccCCCcccCCC-cchhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585 95 RNVEELEVEHLRRLDTWNSLP-QMVLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL 172 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 172 (286)
.++++|+|++.. -..+| ..+..+++|++|+|++|.+....+ ...++++|++|+|+++.++.-.- ..+.++++|
T Consensus 52 ~~~~~LdLs~N~----i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~-~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFNP----LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTSC----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG-GGGTTCTTC
T ss_pred cCCCEEEeeCCC----CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH-HHhcCCCCC
Confidence 467888887211 12333 345678889999998887754323 34568889999998887432111 124668889
Q ss_pred ceEEeeecccc----ceeecccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585 173 QHLEFVRYNNL----VNVSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 173 e~L~l~~c~~~----~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
+.|+++++... ..+..+++|++|++.++.+..-........+++|++|+++++
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence 99998876432 123447889999988776543211134567888888888876
No 114
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.23 E-value=3.5e-06 Score=79.05 Aligned_cols=77 Identities=22% Similarity=0.232 Sum_probs=50.4
Q ss_pred CCceEEEEEeccCCCcccCCCcch-hccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMV-LRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL 172 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 172 (286)
.+++.|+++... -..+|..+ ..+++|+.|+|++|.+....+ ....+++|++|+|+++.++... ...+|+|
T Consensus 123 ~~L~~L~L~~n~----l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L 194 (597)
T 3oja_B 123 PLLTVLVLERND----LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSL 194 (597)
T ss_dssp TTCCEEECCSSC----CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTC
T ss_pred CCCCEEEeeCCC----CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhh
Confidence 578888888221 12555553 578899999999988754323 3556889999999988754322 2345555
Q ss_pred ceEEeee
Q 042585 173 QHLEFVR 179 (286)
Q Consensus 173 e~L~l~~ 179 (286)
+.|++++
T Consensus 195 ~~L~l~~ 201 (597)
T 3oja_B 195 FHANVSY 201 (597)
T ss_dssp SEEECCS
T ss_pred hhhhccc
Confidence 5555543
No 115
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.22 E-value=3.1e-07 Score=77.17 Aligned_cols=35 Identities=23% Similarity=0.461 Sum_probs=32.6
Q ss_pred cCCCCCHHHHHHHHccCChhhHHHhhhhhhhhHhh
Q 042585 16 RISALPQPILQLIMSFLPFKQVVQICMVSKVWLQA 50 (286)
Q Consensus 16 ~i~~LPdeil~~Ils~L~~~d~~~~~~vskrW~~l 50 (286)
.|+.||+||+.+|||||+++|+++++.|||+||.+
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l 38 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET 38 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999863
No 116
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.20 E-value=2.5e-06 Score=81.08 Aligned_cols=127 Identities=20% Similarity=0.145 Sum_probs=88.5
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ 173 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 173 (286)
.++++|+++... -....|..+..+++|++|+|+++.+....+ ....+++|++|+|+++.++.-.- ..+..+++|+
T Consensus 49 ~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~ 124 (680)
T 1ziw_A 49 SQLTSLDVGFNT---ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN-NPFVKQKNLI 124 (680)
T ss_dssp TTCSEEECCSSC---CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCS-CTTTTCTTCC
T ss_pred CcCcEEECCCCc---cCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccCh-hHccccCCCC
Confidence 688999998222 122335567789999999999988855333 35679999999999987432110 1245799999
Q ss_pred eEEeeecccc----ceeecccCCceEEecCcccChhhHHHHH-hcCCCccEEecccc
Q 042585 174 HLEFVRYNNL----VNVSSCKNLKHLDLCDGSYTDEWLNSQI-SGLPLLEQLHISLC 225 (286)
Q Consensus 174 ~L~l~~c~~~----~~~~~~~~L~~L~l~~~~~~~~~l~~~~-~~~p~L~~L~l~~c 225 (286)
.|+++++... ..+..+++|++|++.++.++......+. ..+++|++|+++++
T Consensus 125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred EEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 9999987543 2233489999999998876543222332 36789999999887
No 117
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.20 E-value=3.5e-06 Score=74.14 Aligned_cols=62 Identities=29% Similarity=0.433 Sum_probs=33.8
Q ss_pred HHHHHhcCCCcceEEeeecccccee-ecccCCceEEecCcccChhhHHHHHh-cCCCccEEecc
Q 042585 162 MNNLFAQSPLLQHLEFVRYNNLVNV-SSCKNLKHLDLCDGSYTDEWLNSQIS-GLPLLEQLHIS 223 (286)
Q Consensus 162 l~~l~~~cp~Le~L~l~~c~~~~~~-~~~~~L~~L~l~~~~~~~~~l~~~~~-~~p~L~~L~l~ 223 (286)
+..++..+|+|++|.+.++.+...- ...++|++|++..|.++++.+..+.. .+|+|++|++.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 4455566666666666655322110 01566666666666565555544442 46666666653
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.18 E-value=9.5e-07 Score=70.75 Aligned_cols=122 Identities=14% Similarity=0.166 Sum_probs=88.4
Q ss_pred hCCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585 94 ERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ 173 (286)
Q Consensus 94 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 173 (286)
-.++++|+++... -..+| .+..+++|+.|++++|.+..+......+++|++|+|+++.++. +.. +..+++|+
T Consensus 47 l~~L~~L~ls~n~----l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~--l~~-~~~l~~L~ 118 (198)
T 1ds9_A 47 LKACKHLALSTNN----IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LSG-IEKLVNLR 118 (198)
T ss_dssp TTTCSEEECSEEE----ESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC--HHH-HHHHHHSS
T ss_pred CCCCCEEECCCCC----Ccccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc--CCc-cccCCCCC
Confidence 3689999998222 12256 7788999999999999986543334457999999999999654 333 55789999
Q ss_pred eEEeeecccc--c---eeecccCCceEEecCcccChh---------hHHHHHhcCCCccEEecc
Q 042585 174 HLEFVRYNNL--V---NVSSCKNLKHLDLCDGSYTDE---------WLNSQISGLPLLEQLHIS 223 (286)
Q Consensus 174 ~L~l~~c~~~--~---~~~~~~~L~~L~l~~~~~~~~---------~l~~~~~~~p~L~~L~l~ 223 (286)
.|+++++... . .+..+++|+.|++.++.+... ....+...+|+|++|+-.
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~ 182 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGM 182 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCG
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCc
Confidence 9999987543 1 233489999999998866432 122346788999998733
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.15 E-value=2.5e-06 Score=69.61 Aligned_cols=133 Identities=18% Similarity=0.100 Sum_probs=89.7
Q ss_pred CCCcchhccCCccEEEEeceeeccCCc--CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----cee
Q 042585 113 SLPQMVLRSKSIKVLTLQNYKLESLGN--DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNV 186 (286)
Q Consensus 113 ~l~~~~~~~~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~ 186 (286)
.+|..+ .+.++.|+|+++.+....+ ....+++|++|+|+++.++.-.- ..+..+++|+.|+++++... ..+
T Consensus 25 ~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 101 (220)
T 2v70_A 25 KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE-GAFEGASGVNEILLTSNRLENVQHKMF 101 (220)
T ss_dssp SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCCCCGGGG
T ss_pred cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH-HHhCCCCCCCEEECCCCccCccCHhHh
Confidence 455443 3567899999988854322 24579999999999988443211 12467899999999977543 123
Q ss_pred ecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccc--ccc-ccccccEEEeecccCC
Q 042585 187 SSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIES--ITI-SSLRLKKLIINTCESN 249 (286)
Q Consensus 187 ~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~--~~i-~~p~L~~L~ls~c~~~ 249 (286)
..+++|++|+++++.++.-.. .....+++|++|+++++.--.. -.+ ..++|+.|++++....
T Consensus 102 ~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 102 KGLESLKTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTCSSCCEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCCcCCCEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 348999999999887653211 2235789999999999742211 112 2478999999887543
No 120
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.14 E-value=1.1e-06 Score=81.77 Aligned_cols=151 Identities=16% Similarity=0.104 Sum_probs=99.9
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCC---cCcccCCCccEEEcceeeeChHHHHHHHhcCCC
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLG---NDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPL 171 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~ 171 (286)
.++++++++... .....|..+..+++|+.|+++++.+.... .....+++|++|+|+++.++...-......+++
T Consensus 353 ~~L~~L~l~~n~---l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 353 SSFTFLNFTQNV---FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp CCCCEEECCSSC---CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred CCceEEECCCCc---cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 345555555111 11234566678899999999998885421 124579999999999998543111123456899
Q ss_pred cceEEeeeccccceeec-c-cCCceEEecCcccChhhHHHHHhcCCCccEEecccccCccccc---c-ccccccEEEeec
Q 042585 172 LQHLEFVRYNNLVNVSS-C-KNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIESIT---I-SSLRLKKLIINT 245 (286)
Q Consensus 172 Le~L~l~~c~~~~~~~~-~-~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i-~~p~L~~L~ls~ 245 (286)
|+.|+++++........ . ++|+.|+++++.++. +..-...+++|++|+++++.- +.+. + ..++|+.|++++
T Consensus 430 L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~--ip~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 430 ILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS--IPKDVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHD 506 (562)
T ss_dssp CCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCC--CCTTTTSSCCCSEEECCSSCC-CCCCTTSTTTCTTCCCEECCS
T ss_pred CCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcc--cChhhcCCCCCCEEECCCCCC-CCCCHHHHhcCCCCCEEEecC
Confidence 99999998764322222 3 799999999887652 111123889999999999742 2222 2 247899999998
Q ss_pred ccCCcc
Q 042585 246 CESNTI 251 (286)
Q Consensus 246 c~~~~~ 251 (286)
++...+
T Consensus 507 N~~~c~ 512 (562)
T 3a79_B 507 NPWDCT 512 (562)
T ss_dssp CCBCCC
T ss_pred CCcCCC
Confidence 765443
No 121
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.13 E-value=8.2e-06 Score=76.86 Aligned_cols=112 Identities=21% Similarity=0.157 Sum_probs=66.2
Q ss_pred hCCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585 94 ERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ 173 (286)
Q Consensus 94 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 173 (286)
..+++.++++... -..+|..+. ++|+.|+|++|.+... +. .+++|++|+|+++.++. +-...++|+
T Consensus 39 ~~~l~~L~ls~n~----L~~lp~~l~--~~L~~L~L~~N~l~~l-p~--~l~~L~~L~Ls~N~l~~-----lp~~l~~L~ 104 (622)
T 3g06_A 39 NNGNAVLNVGESG----LTTLPDCLP--AHITTLVIPDNNLTSL-PA--LPPELRTLEVSGNQLTS-----LPVLPPGLL 104 (622)
T ss_dssp HHCCCEEECCSSC----CSCCCSCCC--TTCSEEEECSCCCSCC-CC--CCTTCCEEEECSCCCSC-----CCCCCTTCC
T ss_pred CCCCcEEEecCCC----cCccChhhC--CCCcEEEecCCCCCCC-CC--cCCCCCEEEcCCCcCCc-----CCCCCCCCC
Confidence 3467888887221 125555443 7888888888877543 22 57888888888887432 112577888
Q ss_pred eEEeeeccccceee-cccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585 174 HLEFVRYNNLVNVS-SCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 174 ~L~l~~c~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
.|+++++... .+. ..++|+.|++.++.++. +....++|++|++++|
T Consensus 105 ~L~Ls~N~l~-~l~~~l~~L~~L~L~~N~l~~-----lp~~l~~L~~L~Ls~N 151 (622)
T 3g06_A 105 ELSIFSNPLT-HLPALPSGLCKLWIFGNQLTS-----LPVLPPGLQELSVSDN 151 (622)
T ss_dssp EEEECSCCCC-CCCCCCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSS
T ss_pred EEECcCCcCC-CCCCCCCCcCEEECCCCCCCc-----CCCCCCCCCEEECcCC
Confidence 8888765322 222 25566666666554432 1223456666666554
No 122
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.09 E-value=5.5e-06 Score=65.70 Aligned_cols=105 Identities=10% Similarity=0.079 Sum_probs=78.1
Q ss_pred ccCCCccEEEccee-eeChHHHHHHH---hcCCCcceEEeeecccc----ceeec----ccCCceEEecCcccChhhHHH
Q 042585 142 VKLLSLRKLHLSDV-YADDQVMNNLF---AQSPLLQHLEFVRYNNL----VNVSS----CKNLKHLDLCDGSYTDEWLNS 209 (286)
Q Consensus 142 ~~~~~L~~L~L~~~-~~~~~~l~~l~---~~cp~Le~L~l~~c~~~----~~~~~----~~~L~~L~l~~~~~~~~~l~~ 209 (286)
...++|++|+|+++ .+++.++..+. ..++.|++|+|++|... ..++. .++|++|+++++.+++++...
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 45889999999999 69988776665 45899999999987543 11221 689999999999999877554
Q ss_pred H---HhcCCCccEEec--ccccCcccccc--------ccccccEEEeeccc
Q 042585 210 Q---ISGLPLLEQLHI--SLCNNIESITI--------SSLRLKKLIINTCE 247 (286)
Q Consensus 210 ~---~~~~p~L~~L~l--~~c~~~~~~~i--------~~p~L~~L~ls~c~ 247 (286)
+ ....++|++|++ +++. +++.+. ..+.|+.|+++++.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4 356788999999 5543 333221 13789999998873
No 123
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.09 E-value=1.8e-06 Score=74.72 Aligned_cols=101 Identities=14% Similarity=0.075 Sum_probs=50.0
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccC-CcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESL-GNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ 173 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 173 (286)
.+++.|++.... -....|..+..+++|++|+++++.+... ......+++|++|+|+++.++.- .. ..+++|+
T Consensus 54 ~~l~~L~l~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l--~~--~~~~~L~ 126 (332)
T 2ft3_A 54 PDTTLLDLQNND---ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI--PP--NLPSSLV 126 (332)
T ss_dssp TTCCEEECCSSC---CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSC--CS--SCCTTCC
T ss_pred CCCeEEECCCCc---CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCcc--Cc--cccccCC
Confidence 356666666111 0111123455667777777777665332 12334567777777776653310 00 1125666
Q ss_pred eEEeeecccc----ceeecccCCceEEecCccc
Q 042585 174 HLEFVRYNNL----VNVSSCKNLKHLDLCDGSY 202 (286)
Q Consensus 174 ~L~l~~c~~~----~~~~~~~~L~~L~l~~~~~ 202 (286)
+|+++++... ..+..+++|+.|++.++.+
T Consensus 127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l 159 (332)
T 2ft3_A 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159 (332)
T ss_dssp EEECCSSCCCCCCSGGGSSCSSCCEEECCSCCC
T ss_pred EEECCCCccCccCHhHhCCCccCCEEECCCCcc
Confidence 6666654322 1122256666666665544
No 124
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=98.06 E-value=1.1e-06 Score=78.96 Aligned_cols=44 Identities=27% Similarity=0.435 Sum_probs=38.8
Q ss_pred cCCCcccCCCCCHHHHHHHHccCChhhHHHhhhhhhhhHhhhcc
Q 042585 10 KNHNVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQAWHT 53 (286)
Q Consensus 10 ~~~~~d~i~~LPdeil~~Ils~L~~~d~~~~~~vskrW~~lw~~ 53 (286)
++-..|.|+.||+|++.+||+||+.+++++++.|||+|+++...
T Consensus 8 ~~~~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 8 DNLKRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp -CCCCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred cccccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 34467899999999999999999999999999999999986544
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.06 E-value=2.8e-06 Score=74.57 Aligned_cols=36 Identities=17% Similarity=0.095 Sum_probs=15.0
Q ss_pred ccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585 189 CKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 189 ~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
+++|+.|+++++.++.-.. .....+++|++|+++++
T Consensus 111 l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 111 LQALEVLLLYNNHIVVVDR-NAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp CTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSS
T ss_pred CcCCCEEECCCCcccEECH-HHhCCcccCCEEECCCC
Confidence 4455555555443332100 11234455555555543
No 126
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.05 E-value=3.9e-06 Score=72.64 Aligned_cols=122 Identities=19% Similarity=0.206 Sum_probs=82.6
Q ss_pred CceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585 96 NVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH 174 (286)
Q Consensus 96 ~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 174 (286)
.++.+++... .-..+|..+ .++|+.|+++++.+....+ ....+++|++|+|.++.++...- ..+..+++|+.
T Consensus 34 ~l~~l~~~~~----~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDL----GLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-KAFSPLRKLQK 106 (332)
T ss_dssp ETTEEECCSS----CCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG-GGSTTCTTCCE
T ss_pred cCCEEECCCC----CccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH-hHhhCcCCCCE
Confidence 3566665511 223555544 3689999999988754322 45679999999999988543211 12467999999
Q ss_pred EEeeeccccceeec--ccCCceEEecCcccChhhHHHHHhcCCCccEEeccccc
Q 042585 175 LEFVRYNNLVNVSS--CKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCN 226 (286)
Q Consensus 175 L~l~~c~~~~~~~~--~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~ 226 (286)
|+++++... .+.. .++|++|++.++.++.-. ......+++|++|+++++.
T Consensus 107 L~L~~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 107 LYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVP-KGVFSGLRNMNCIEMGGNP 158 (332)
T ss_dssp EECCSSCCC-SCCSSCCTTCCEEECCSSCCCCCC-SGGGSSCSSCCEEECCSCC
T ss_pred EECCCCcCC-ccCccccccCCEEECCCCccCccC-HhHhCCCccCCEEECCCCc
Confidence 999976432 2222 589999999988765321 1334678999999999874
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.05 E-value=6.3e-06 Score=76.84 Aligned_cols=119 Identities=23% Similarity=0.224 Sum_probs=66.3
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH 174 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 174 (286)
..++.|+++... -..+|. +..+++|+.|+|+++.+...+.....+++|++|+|+++.++. +. -+..+++|+.
T Consensus 441 ~~L~~L~Ls~n~----l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~ 512 (567)
T 1dce_A 441 ADVRVLHLAHKD----LTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQE 512 (567)
T ss_dssp TTCSEEECTTSC----CSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCE
T ss_pred cCceEEEecCCC----CCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcE
Confidence 456677776111 123454 666777777777777665443345557777777777777443 22 2455677777
Q ss_pred EEeeecccc-----ceeecccCCceEEecCcccChh--hHHHHHhcCCCccEEe
Q 042585 175 LEFVRYNNL-----VNVSSCKNLKHLDLCDGSYTDE--WLNSQISGLPLLEQLH 221 (286)
Q Consensus 175 L~l~~c~~~-----~~~~~~~~L~~L~l~~~~~~~~--~l~~~~~~~p~L~~L~ 221 (286)
|+++++... ..+..+++|+.|+++++.++.. ....+...+|+|+.|+
T Consensus 513 L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred EECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 777655321 1122266667776666554321 1223444466666654
No 128
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.05 E-value=3e-06 Score=79.38 Aligned_cols=132 Identities=18% Similarity=0.129 Sum_probs=89.8
Q ss_pred cCCCcchhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----cee
Q 042585 112 NSLPQMVLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNV 186 (286)
Q Consensus 112 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~ 186 (286)
..+|..+ -+++++|+|+++.+....+ ...++++|++|+|+++.++.-. ...+..+++|++|+|+++... ..+
T Consensus 44 ~~vP~~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~l~~l~~~~f 120 (635)
T 4g8a_A 44 YKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQSLALGAF 120 (635)
T ss_dssp SSCCSSS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCCEECGGGG
T ss_pred CccCCCC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCcCCCCCHHHh
Confidence 4555443 2578999999988855323 4567999999999999743211 112457999999999987532 123
Q ss_pred ecccCCceEEecCcccChhhHHHHHhcCCCccEEecccccCcc----ccccccccccEEEeeccc
Q 042585 187 SSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCNNIE----SITISSLRLKKLIINTCE 247 (286)
Q Consensus 187 ~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~----~~~i~~p~L~~L~ls~c~ 247 (286)
..+++|++|++.++.++.-. ......+++|++|+++++.--. ...-..++|+.|+++++.
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~-~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp TTCTTCCEEECTTSCCCCST-TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCcCCCCC-hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence 44899999999988665311 0224678999999999974211 111224789999999874
No 129
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.04 E-value=1.8e-05 Score=77.22 Aligned_cols=148 Identities=12% Similarity=0.073 Sum_probs=80.4
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccC-CcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcc
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESL-GNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQ 173 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le 173 (286)
.+++.|++.... -....|..+..+++|++|+|+++.+... ......+++|++|+|+++.++.-.- ..+..+++|+
T Consensus 290 ~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-~~~~~l~~L~ 365 (844)
T 3j0a_A 290 KDLKVLNLAYNK---INKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD-QTFKFLEKLQ 365 (844)
T ss_dssp CCCCEEEEESCC---CCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS-SCSCSCCCCC
T ss_pred CCCCEEECCCCc---CCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh-hhhcCCCCCC
Confidence 578888888221 1122344556778888888888877442 2344568888888888777322111 1235578888
Q ss_pred eEEeeeccccceeecccCCceEEec--------------------CcccChhhHHHHHhcCCCccEEecccccCcc----
Q 042585 174 HLEFVRYNNLVNVSSCKNLKHLDLC--------------------DGSYTDEWLNSQISGLPLLEQLHISLCNNIE---- 229 (286)
Q Consensus 174 ~L~l~~c~~~~~~~~~~~L~~L~l~--------------------~~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~---- 229 (286)
.|+++++.. ..+..+++|+.|.+. ++.+++-........+|+|++|+++++....
T Consensus 366 ~L~Ls~N~l-~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 444 (844)
T 3j0a_A 366 TLDLRDNAL-TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGD 444 (844)
T ss_dssp EEEEETCCS-CCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSS
T ss_pred EEECCCCCC-CcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccc
Confidence 888876532 122224444444444 3333321111334477888888877763221
Q ss_pred ccccccccccEEEeeccc
Q 042585 230 SITISSLRLKKLIINTCE 247 (286)
Q Consensus 230 ~~~i~~p~L~~L~ls~c~ 247 (286)
......++|+.|+++++.
T Consensus 445 ~~~~~~~~L~~L~Ls~N~ 462 (844)
T 3j0a_A 445 QTPSENPSLEQLFLGENM 462 (844)
T ss_dssp SSSCSCTTCCBCEEESCC
T ss_pred cccccCCccccccCCCCc
Confidence 011113556666666553
No 130
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.99 E-value=1.6e-05 Score=74.81 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=15.4
Q ss_pred cCCccEEEEeceeeccCCcCcccCCCccEEEcceee
Q 042585 121 SKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY 156 (286)
Q Consensus 121 ~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~ 156 (286)
.++|++|+|++|.+... +. .+++|++|+|+++.
T Consensus 80 l~~L~~L~Ls~N~l~~l-p~--~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 80 PPELRTLEVSGNQLTSL-PV--LPPGLLELSIFSNP 112 (622)
T ss_dssp CTTCCEEEECSCCCSCC-CC--CCTTCCEEEECSCC
T ss_pred CCCCCEEEcCCCcCCcC-CC--CCCCCCEEECcCCc
Confidence 35555555555554321 11 34455555554443
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.96 E-value=5.6e-06 Score=65.95 Aligned_cols=111 Identities=20% Similarity=0.179 Sum_probs=73.5
Q ss_pred cCCCcchhccCCccEEEEeceeeccCCcC--cccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc----e
Q 042585 112 NSLPQMVLRSKSIKVLTLQNYKLESLGND--DVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV----N 185 (286)
Q Consensus 112 ~~l~~~~~~~~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~----~ 185 (286)
..+|..+. .+|+.|+++++.+....+. ...+++|++|+|+++.++... ...+...++|+.|+++++.... .
T Consensus 21 ~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 97 (192)
T 1w8a_A 21 KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIKEISNKM 97 (192)
T ss_dssp SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCCEECSSS
T ss_pred CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCcCCccCHHH
Confidence 34554443 3889999999887543232 557899999999988844321 1224568899999998765431 1
Q ss_pred eecccCCceEEecCcccChhhHHHHHhcCCCccEEeccccc
Q 042585 186 VSSCKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLCN 226 (286)
Q Consensus 186 ~~~~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~ 226 (286)
+..+++|+.|+++++.++.-.. ......++|++|+++++.
T Consensus 98 ~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 98 FLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp STTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCC
T ss_pred hcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCC
Confidence 3337889999998876653211 233567889999888854
No 132
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.95 E-value=6e-06 Score=73.95 Aligned_cols=42 Identities=26% Similarity=0.426 Sum_probs=38.5
Q ss_pred ccCCCcccCCCCCHHHHHHHHccCChhhHHHhhhhhhhhHhh
Q 042585 9 KKNHNVDRISALPQPILQLIMSFLPFKQVVQICMVSKVWLQA 50 (286)
Q Consensus 9 ~~~~~~d~i~~LPdeil~~Ils~L~~~d~~~~~~vskrW~~l 50 (286)
++....|.|+.||+|++.+||+||+.+++++++.|||+|+.+
T Consensus 11 ~~~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~ 52 (445)
T 2ovr_B 11 EPQFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52 (445)
T ss_dssp CCCCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred CccccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence 455578999999999999999999999999999999999874
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.95 E-value=6.3e-06 Score=65.77 Aligned_cols=102 Identities=16% Similarity=0.121 Sum_probs=61.8
Q ss_pred CCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----ceeecccCCceEEe
Q 042585 122 KSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVSSCKNLKHLDL 197 (286)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~~~~~L~~L~l 197 (286)
++|++|+++++.+.........+++|++|+|+++.++.-.- ..+..+++|+.|+++++... ..+..+++|+.|++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~-~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSN-QSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCH-hHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 57788888877775433344567788888888777432111 12345777888888765432 12333677888888
Q ss_pred cCcccChhhHHHHHhcCCCccEEecccc
Q 042585 198 CDGSYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 198 ~~~~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
.++.++.-. ......+++|++|++.++
T Consensus 110 ~~N~l~~~~-~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 110 HGNDISVVP-EGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CSSCCCBCC-TTTTTTCTTCCEEECCSS
T ss_pred CCCCCCeeC-hhhhhcCccccEEEeCCC
Confidence 776554211 022345677788877774
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.94 E-value=6.5e-06 Score=76.76 Aligned_cols=102 Identities=21% Similarity=0.188 Sum_probs=65.0
Q ss_pred CCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc--ceeecccCCceEEecC
Q 042585 122 KSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL--VNVSSCKNLKHLDLCD 199 (286)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~~~~L~~L~l~~ 199 (286)
..|+.|+|+++.+... +....+++|+.|+|+++.++ .+..-+..+++|+.|+++++... ..+..+++|+.|++++
T Consensus 441 ~~L~~L~Ls~n~l~~l-p~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 441 ADVRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCN 517 (567)
T ss_dssp TTCSEEECTTSCCSSC-CCGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred cCceEEEecCCCCCCC-cCccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCC
Confidence 3577888888777543 34666888888888887744 22223556788888888765322 2233377888888887
Q ss_pred cccChhhHHHHHhcCCCccEEeccccc
Q 042585 200 GSYTDEWLNSQISGLPLLEQLHISLCN 226 (286)
Q Consensus 200 ~~~~~~~l~~~~~~~p~L~~L~l~~c~ 226 (286)
+.++.-........+++|+.|+++++.
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 765532101334567788888887764
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.90 E-value=9.7e-06 Score=63.46 Aligned_cols=103 Identities=22% Similarity=0.178 Sum_probs=63.2
Q ss_pred CCccEEEEeceeeccCCcC-cccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc----eeecccCCceEE
Q 042585 122 KSIKVLTLQNYKLESLGND-DVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV----NVSSCKNLKHLD 196 (286)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~----~~~~~~~L~~L~ 196 (286)
++|++|+++++.+....+. ...+++|++|+|+++.++.-. ...+..+++|+.|+++++.... .+..+++|+.|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP-DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC-hhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 6788888888777443232 345788888888887743211 1223567888888887664321 122367788888
Q ss_pred ecCcccChhhHHHHHhcCCCccEEeccccc
Q 042585 197 LCDGSYTDEWLNSQISGLPLLEQLHISLCN 226 (286)
Q Consensus 197 l~~~~~~~~~l~~~~~~~p~L~~L~l~~c~ 226 (286)
+.++.++.-. ..+...+++|++|+++++.
T Consensus 107 l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 107 LDTNQLKSVP-DGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCSSCCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CcCCcceEeC-HHHhcCCcccCEEEecCCC
Confidence 8776554211 1223456778888777754
No 136
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.89 E-value=1.6e-05 Score=74.03 Aligned_cols=55 Identities=29% Similarity=0.301 Sum_probs=32.3
Q ss_pred hCCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeee
Q 042585 94 ERNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYA 157 (286)
Q Consensus 94 ~~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 157 (286)
..+++.|++.... -..+|..+ .++|+.|+|+++.+... + ..+++|++|+|+++.+
T Consensus 58 ~~~L~~L~Ls~n~----L~~lp~~l--~~~L~~L~Ls~N~l~~i-p--~~l~~L~~L~Ls~N~l 112 (571)
T 3cvr_A 58 INQFSELQLNRLN----LSSLPDNL--PPQITVLEITQNALISL-P--ELPASLEYLDACDNRL 112 (571)
T ss_dssp HTTCSEEECCSSC----CSCCCSCC--CTTCSEEECCSSCCSCC-C--CCCTTCCEEECCSSCC
T ss_pred cCCccEEEeCCCC----CCccCHhH--cCCCCEEECcCCCCccc-c--cccCCCCEEEccCCCC
Confidence 3578888887211 11255444 26677777777766432 2 3466777777776653
No 137
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.89 E-value=1.7e-05 Score=71.89 Aligned_cols=98 Identities=14% Similarity=0.180 Sum_probs=44.6
Q ss_pred hhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccceeec-ccCCceEE
Q 042585 118 VLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVNVSS-CKNLKHLD 196 (286)
Q Consensus 118 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~~-~~~L~~L~ 196 (286)
+..+++|++|+++++.+... + ...++|++|+++++.++. +.. +..+++|+.|+++++... .+.. .++|+.|+
T Consensus 149 ~~~l~~L~~L~l~~N~l~~l-p--~~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L~l~~N~l~-~l~~~~~~L~~L~ 221 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNNSLKKL-P--DLPPSLEFIAAGNNQLEE--LPE-LQNLPFLTAIYADNNSLK-KLPDLPLSLESIV 221 (454)
T ss_dssp CTTCTTCCEEECCSSCCSCC-C--CCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSCCS-SCCCCCTTCCEEE
T ss_pred cCCCCCCCEEECCCCcCccc-C--CCcccccEEECcCCcCCc--Ccc-ccCCCCCCEEECCCCcCC-cCCCCcCcccEEE
Confidence 55566666666666655331 1 123456666666555322 111 344566666666554321 1111 33455555
Q ss_pred ecCcccChhhHHHHHhcCCCccEEecccc
Q 042585 197 LCDGSYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 197 l~~~~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
+.++.++. +.. ...+++|++|+++++
T Consensus 222 l~~n~l~~--lp~-~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 222 AGNNILEE--LPE-LQNLPFLTTIYADNN 247 (454)
T ss_dssp CCSSCCSS--CCC-CTTCTTCCEEECCSS
T ss_pred CcCCcCCc--ccc-cCCCCCCCEEECCCC
Confidence 55443331 001 224445555555443
No 138
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.89 E-value=5.8e-06 Score=72.58 Aligned_cols=145 Identities=19% Similarity=0.178 Sum_probs=89.0
Q ss_pred CCceEEEEEeccCCCcccCCCcc-hh-ccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCC
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQM-VL-RSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPL 171 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~-~~-~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~ 171 (286)
..++.|+++... -..++.. +. .+++|+.|+|+++.+....+ ....+++|++|+|+++.++.-. ...+..+++
T Consensus 39 ~~l~~L~Ls~N~----l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~ 113 (361)
T 2xot_A 39 SYTALLDLSHNN----LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD-EFLFSDLQA 113 (361)
T ss_dssp TTCSEEECCSSC----CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTT
T ss_pred CCCCEEECCCCC----CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCC-HHHhCCCcC
Confidence 457788887211 1223332 33 67899999999988754322 3556899999999998843211 122456899
Q ss_pred cceEEeeecccc----ceeecccCCceEEecCcccChhhHHHHH---hcCCCccEEecccccCccccccc----ccc--c
Q 042585 172 LQHLEFVRYNNL----VNVSSCKNLKHLDLCDGSYTDEWLNSQI---SGLPLLEQLHISLCNNIESITIS----SLR--L 238 (286)
Q Consensus 172 Le~L~l~~c~~~----~~~~~~~~L~~L~l~~~~~~~~~l~~~~---~~~p~L~~L~l~~c~~~~~~~i~----~p~--L 238 (286)
|+.|+++++... ..+..+++|+.|+++++.++.-.. .+. ..+++|+.|+++++. ++.+... .+. +
T Consensus 114 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l 191 (361)
T 2xot_A 114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVK 191 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHH
T ss_pred CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhc
Confidence 999999877543 123338899999999876653111 111 468899999998863 2222211 132 4
Q ss_pred cEEEeecc
Q 042585 239 KKLIINTC 246 (286)
Q Consensus 239 ~~L~ls~c 246 (286)
+.|++++.
T Consensus 192 ~~l~l~~N 199 (361)
T 2xot_A 192 NGLYLHNN 199 (361)
T ss_dssp TTEECCSS
T ss_pred ceEEecCC
Confidence 66777664
No 139
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.79 E-value=2.8e-05 Score=70.49 Aligned_cols=9 Identities=11% Similarity=0.320 Sum_probs=5.1
Q ss_pred CCceEEEEE
Q 042585 95 RNVEELEVE 103 (286)
Q Consensus 95 ~~l~~L~l~ 103 (286)
.++++++++
T Consensus 153 ~~L~~L~l~ 161 (454)
T 1jl5_A 153 SFLKIIDVD 161 (454)
T ss_dssp TTCCEEECC
T ss_pred CCCCEEECC
Confidence 355666665
No 140
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.79 E-value=5.1e-06 Score=74.32 Aligned_cols=41 Identities=32% Similarity=0.437 Sum_probs=37.1
Q ss_pred cCCCcccCCCCCHH----HHHHHHccCChhhHHHhhhhhhhhHhh
Q 042585 10 KNHNVDRISALPQP----ILQLIMSFLPFKQVVQICMVSKVWLQA 50 (286)
Q Consensus 10 ~~~~~d~i~~LPde----il~~Ils~L~~~d~~~~~~vskrW~~l 50 (286)
++-..|.|+.||+| ++.+||+||+.++++++++|||+|+++
T Consensus 4 ~~~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~ 48 (435)
T 1p22_A 4 IMLQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV 48 (435)
T ss_dssp CCSCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred hhhhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 34467899999999 999999999999999999999999853
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.71 E-value=5.4e-06 Score=79.58 Aligned_cols=106 Identities=18% Similarity=0.141 Sum_probs=51.3
Q ss_pred cchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc---ceeecccCC
Q 042585 116 QMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL---VNVSSCKNL 192 (286)
Q Consensus 116 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~---~~~~~~~~L 192 (286)
..+..+++|+.|+|+++.+.........+++|++|+|+++.++ .+..-+..+++|+.|+|+++... ..+..+++|
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL 295 (727)
T ss_dssp ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTC
T ss_pred hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCC
Confidence 3344556666666666555333233445666666666666533 11122345666666666654322 112225666
Q ss_pred ceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585 193 KHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 193 ~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
+.|++.++.++. +-.-...+++|++|+++++
T Consensus 296 ~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 296 KYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp SEEECCSSCCCC--CCSSTTSCTTCCCEECTTS
T ss_pred CEEECCCCCCCc--cChhhhcCCCccEEeCCCC
Confidence 666666554431 1011345566666666664
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.70 E-value=1.8e-05 Score=62.93 Aligned_cols=122 Identities=17% Similarity=0.123 Sum_probs=82.0
Q ss_pred cEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----ceeecccCCceEEecCc
Q 042585 125 KVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVSSCKNLKHLDLCDG 200 (286)
Q Consensus 125 ~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~~~~~L~~L~l~~~ 200 (286)
+.+++++..+... |. .-.++|++|+|.++.++.-.-...+..+++|+.|+++++... ..+..+++|+.|+++++
T Consensus 11 ~~l~~s~~~l~~i-p~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEI-PR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSC-CS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcC-cc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6778887777443 21 224589999999998543222223567999999999987543 22334899999999988
Q ss_pred ccChhhHHHHHhcCCCccEEecccccCccc--ccc-ccccccEEEeecccCC
Q 042585 201 SYTDEWLNSQISGLPLLEQLHISLCNNIES--ITI-SSLRLKKLIINTCESN 249 (286)
Q Consensus 201 ~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~--~~i-~~p~L~~L~ls~c~~~ 249 (286)
.++.-.. .....+++|++|+++++.--.. -.+ ..++|+.|++++....
T Consensus 89 ~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISN-KMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECS-SSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCH-HHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 7664211 2245789999999999743221 112 2478999999887544
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.70 E-value=3.5e-05 Score=60.24 Aligned_cols=121 Identities=16% Similarity=0.124 Sum_probs=80.5
Q ss_pred ccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccc----eeecccCCceEEecC
Q 042585 124 IKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLV----NVSSCKNLKHLDLCD 199 (286)
Q Consensus 124 L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~----~~~~~~~L~~L~l~~ 199 (286)
.+.+++++..+... + ....++|++|++.++.++.-. ...+..+++|+.|+++++.... .+..+++|+.|++.+
T Consensus 9 ~~~l~~~~~~l~~~-p-~~~~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSV-P-TGIPSSATRLELESNKLQSLP-HGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSC-C-TTCCTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccC-C-CCCCCCCcEEEeCCCcccEeC-HHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 35677766666442 2 233689999999998844211 1234678999999999774331 133489999999998
Q ss_pred cccChhhHHHHHhcCCCccEEecccccCccccc---c-ccccccEEEeecccCC
Q 042585 200 GSYTDEWLNSQISGLPLLEQLHISLCNNIESIT---I-SSLRLKKLIINTCESN 249 (286)
Q Consensus 200 ~~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i-~~p~L~~L~ls~c~~~ 249 (286)
+.++.-. ......+++|++|+++++. ++.+. + ..++|+.|+++++...
T Consensus 86 N~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NKLQSLP-NGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SCCCCCC-TTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccccC-HHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 8766321 1234578999999999973 22222 1 2478999999987543
No 144
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.67 E-value=4.4e-05 Score=71.11 Aligned_cols=110 Identities=19% Similarity=0.143 Sum_probs=57.8
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH 174 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 174 (286)
.+++.|+++... -..+| ..+++|+.|+|+++.+... +.. ..+|++|+|+++.++. +.. .+++|+.
T Consensus 80 ~~L~~L~Ls~N~----l~~ip---~~l~~L~~L~Ls~N~l~~i-p~l--~~~L~~L~Ls~N~l~~--lp~---~l~~L~~ 144 (571)
T 3cvr_A 80 PQITVLEITQNA----LISLP---ELPASLEYLDACDNRLSTL-PEL--PASLKHLDVDNNQLTM--LPE---LPALLEY 144 (571)
T ss_dssp TTCSEEECCSSC----CSCCC---CCCTTCCEEECCSSCCSCC-CCC--CTTCCEEECCSSCCSC--CCC---CCTTCCE
T ss_pred CCCCEEECcCCC----Ccccc---cccCCCCEEEccCCCCCCc-chh--hcCCCEEECCCCcCCC--CCC---cCccccE
Confidence 467777777211 11344 2356777777777766442 221 1267777777766332 111 4666777
Q ss_pred EEeeeccccceeec-ccCCceEEecCcccChhhHHHHHhcCCCccEEecccc
Q 042585 175 LEFVRYNNLVNVSS-CKNLKHLDLCDGSYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 175 L~l~~c~~~~~~~~-~~~L~~L~l~~~~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
|+++++... .+.. +++|+.|+++++.++.-. . . .++|++|+++++
T Consensus 145 L~Ls~N~l~-~lp~~l~~L~~L~Ls~N~L~~lp--~--l-~~~L~~L~Ls~N 190 (571)
T 3cvr_A 145 INADNNQLT-MLPELPTSLEVLSVRNNQLTFLP--E--L-PESLEALDVSTN 190 (571)
T ss_dssp EECCSSCCS-CCCCCCTTCCEEECCSSCCSCCC--C--C-CTTCCEEECCSS
T ss_pred EeCCCCccC-cCCCcCCCcCEEECCCCCCCCcc--h--h-hCCCCEEECcCC
Confidence 777655322 1222 556666666665544310 1 1 156666666654
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.65 E-value=4.7e-05 Score=60.64 Aligned_cols=118 Identities=15% Similarity=0.043 Sum_probs=80.0
Q ss_pred cEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----ceeecccCCceEEecCc
Q 042585 125 KVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVSSCKNLKHLDLCDG 200 (286)
Q Consensus 125 ~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~~~~~L~~L~l~~~ 200 (286)
+.+++++..+... | ..-.++|++|+|.++.++. +...+..+++|+.|+++++... ..+..+++|++|+++++
T Consensus 13 ~~l~~~~~~l~~i-p-~~~~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVL-P-KGIPRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSC-C-SCCCTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcC-C-CCCCCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 5667777666442 2 1235789999999998542 2234577999999999977543 12344899999999988
Q ss_pred ccChhhHHHHHhcCCCccEEecccccCccccc---c-ccccccEEEeecccC
Q 042585 201 SYTDEWLNSQISGLPLLEQLHISLCNNIESIT---I-SSLRLKKLIINTCES 248 (286)
Q Consensus 201 ~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~---i-~~p~L~~L~ls~c~~ 248 (286)
.++.-.. .....+++|++|+++++.- +.+. + ..++|+.|++++.+.
T Consensus 89 ~l~~i~~-~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPP-RTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCT-TTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCH-HHhCCCCCCCEEECCCCCC-CeeChhhhhcCccccEEEeCCCCe
Confidence 7654211 2345789999999999742 2221 2 247899999987543
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.63 E-value=6.8e-06 Score=78.91 Aligned_cols=104 Identities=16% Similarity=0.141 Sum_probs=78.9
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcce
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQH 174 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~ 174 (286)
..++.|+|+.. .-..+|..++.+++|++|+|+++.+.........+++|++|+|+++.++ .+..-+..+++|+.
T Consensus 224 ~~L~~L~Ls~n----~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 224 QLWHALDLSNL----QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKY 297 (727)
T ss_dssp CCCCEEECTTS----CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSE
T ss_pred CCCcEEECCCC----CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCE
Confidence 56788888722 2237788888999999999999988654344667999999999999955 22333567999999
Q ss_pred EEeeecccc---ceeecccCCceEEecCcccCh
Q 042585 175 LEFVRYNNL---VNVSSCKNLKHLDLCDGSYTD 204 (286)
Q Consensus 175 L~l~~c~~~---~~~~~~~~L~~L~l~~~~~~~ 204 (286)
|+|+++... ..+..+++|+.|+++++.++.
T Consensus 298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp EECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred EECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence 999987432 223348999999999887764
No 147
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.46 E-value=9.2e-05 Score=64.50 Aligned_cols=37 Identities=14% Similarity=0.091 Sum_probs=18.6
Q ss_pred CCccEEecccccCccccc---cccccccEEEeecccCCccc
Q 042585 215 PLLEQLHISLCNNIESIT---ISSLRLKKLIINTCESNTIF 252 (286)
Q Consensus 215 p~L~~L~l~~c~~~~~~~---i~~p~L~~L~ls~c~~~~~~ 252 (286)
..|+.|+++++. ++.+. ...++|+.|.++++..++.+
T Consensus 154 ~~l~~L~L~~N~-i~~i~~~~f~~~~L~~l~l~~~n~l~~i 193 (350)
T 4ay9_X 154 FESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLEEL 193 (350)
T ss_dssp SSCEEEECCSSC-CCEECTTSSTTEEEEEEECTTCTTCCCC
T ss_pred hhhhhhcccccc-ccCCChhhccccchhHHhhccCCcccCC
Confidence 345556665532 12221 12356677777766655554
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.09 E-value=0.00044 Score=53.96 Aligned_cols=79 Identities=18% Similarity=0.186 Sum_probs=41.8
Q ss_pred CCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc---c-eeecccCCceEE
Q 042585 122 KSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL---V-NVSSCKNLKHLD 196 (286)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~---~-~~~~~~~L~~L~ 196 (286)
++|+.|+|+++.+....+ ....+++|++|+|+++.++.-. ..++..+++|+.|+++++... . .+..+++|+.|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEE
Confidence 667777777766644322 2345677777777776633210 112344666666666654322 1 122256666666
Q ss_pred ecCcc
Q 042585 197 LCDGS 201 (286)
Q Consensus 197 l~~~~ 201 (286)
+.++.
T Consensus 112 L~~N~ 116 (174)
T 2r9u_A 112 LYNNP 116 (174)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 66544
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.08 E-value=0.0004 Score=53.88 Aligned_cols=87 Identities=20% Similarity=0.230 Sum_probs=51.0
Q ss_pred CCCcchhccCCccEEEEeceeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc---c-eee
Q 042585 113 SLPQMVLRSKSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL---V-NVS 187 (286)
Q Consensus 113 ~l~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~---~-~~~ 187 (286)
.+|..+ .++|+.|+|+++.+....+ ....+++|++|+|+++.++.-. ...+..+++|+.|+++++... . .+.
T Consensus 23 ~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N~l~~~~~~~~~ 99 (170)
T 3g39_A 23 SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDNQLKSIPRGAFD 99 (170)
T ss_dssp SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCCccCEeCHHHhc
Confidence 344433 2677888888877744322 3445778888888877743211 122355777777777765332 1 122
Q ss_pred cccCCceEEecCccc
Q 042585 188 SCKNLKHLDLCDGSY 202 (286)
Q Consensus 188 ~~~~L~~L~l~~~~~ 202 (286)
.+++|+.|++.++.+
T Consensus 100 ~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 100 NLKSLTHIWLLNNPW 114 (170)
T ss_dssp TCTTCCEEECCSSCB
T ss_pred CCCCCCEEEeCCCCC
Confidence 367777777776544
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.06 E-value=0.00026 Score=54.95 Aligned_cols=100 Identities=15% Similarity=0.062 Sum_probs=67.7
Q ss_pred CccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeecccc----ceeecccCCceEEec
Q 042585 123 SIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVSSCKNLKHLDLC 198 (286)
Q Consensus 123 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~~~~~L~~L~l~ 198 (286)
..+.++++++.+... |. .-.++|++|+|+++.++.-. ...+..+++|+.|+++++... ..+..+++|+.|+++
T Consensus 10 ~~~~l~~s~n~l~~i-p~-~~~~~l~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASV-PT-GIPTTTQVLYLYDNQITKLE-PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSC-CS-CCCTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCcc-Cc-cCCCCCcEEEcCCCcCCccC-hhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 346788888777543 21 22588999999999844321 122456899999999976533 112338899999999
Q ss_pred CcccChhhHHHHHhcCCCccEEeccccc
Q 042585 199 DGSYTDEWLNSQISGLPLLEQLHISLCN 226 (286)
Q Consensus 199 ~~~~~~~~l~~~~~~~p~L~~L~l~~c~ 226 (286)
++.++.-. ......+++|++|++++++
T Consensus 87 ~N~l~~~~-~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 87 DNQLKSIP-RGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CCccCEeC-HHHhcCCCCCCEEEeCCCC
Confidence 88765311 1234578999999999853
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.02 E-value=0.0023 Score=54.96 Aligned_cols=34 Identities=9% Similarity=0.103 Sum_probs=20.7
Q ss_pred cCCccEEEEeceeecc-CCcCcccCCCccEEEccee
Q 042585 121 SKSIKVLTLQNYKLES-LGNDDVKLLSLRKLHLSDV 155 (286)
Q Consensus 121 ~~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~ 155 (286)
|++|++|.|.. .+.. ....+.+|++|++|+|.+.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n 134 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK 134 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC
Confidence 68888888876 3322 1133456788888887655
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.90 E-value=0.00078 Score=56.41 Aligned_cols=80 Identities=21% Similarity=0.233 Sum_probs=42.7
Q ss_pred cCCCccEEEcceeeeCh-HHHHHHHhcCCCcceEEeeecccc--ceeeccc--CCceEEecCcccCh------hhHHHHH
Q 042585 143 KLLSLRKLHLSDVYADD-QVMNNLFAQSPLLQHLEFVRYNNL--VNVSSCK--NLKHLDLCDGSYTD------EWLNSQI 211 (286)
Q Consensus 143 ~~~~L~~L~L~~~~~~~-~~l~~l~~~cp~Le~L~l~~c~~~--~~~~~~~--~L~~L~l~~~~~~~------~~l~~~~ 211 (286)
.+|+|++|+|+++.++. ..+..++..+|+|+.|+|++.... ..+.... +|+.|.+.++.+.. .....+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 46667777777666332 233344455677777777644321 1222222 67777776655442 2223455
Q ss_pred hcCCCccEEec
Q 042585 212 SGLPLLEQLHI 222 (286)
Q Consensus 212 ~~~p~L~~L~l 222 (286)
..+|+|+.|+-
T Consensus 248 ~~~P~L~~LDg 258 (267)
T 3rw6_A 248 ERFPKLLRLDG 258 (267)
T ss_dssp HHCTTCCEESS
T ss_pred HHCcccCeECC
Confidence 66677776663
No 153
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.66 E-value=0.0039 Score=49.58 Aligned_cols=104 Identities=10% Similarity=0.129 Sum_probs=64.3
Q ss_pred cCCCccEEEccee-eeChHHHHHHHh---cCCCcceEEeeecccc----ceee----cccCCceEEecCcccChhhHHHH
Q 042585 143 KLLSLRKLHLSDV-YADDQVMNNLFA---QSPLLQHLEFVRYNNL----VNVS----SCKNLKHLDLCDGSYTDEWLNSQ 210 (286)
Q Consensus 143 ~~~~L~~L~L~~~-~~~~~~l~~l~~---~cp~Le~L~l~~c~~~----~~~~----~~~~L~~L~l~~~~~~~~~l~~~ 210 (286)
.-+.|++|+|.++ .+++.+...++. .-..|+.|+|++|... ..++ .-.+|++|++..+.+++++...+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3566778888776 477776655543 3556888888766432 1111 16788888888888888766555
Q ss_pred Hh---cCCCccEEeccccc--Cccccc---c-----ccccccEEEeecc
Q 042585 211 IS---GLPLLEQLHISLCN--NIESIT---I-----SSLRLKKLIINTC 246 (286)
Q Consensus 211 ~~---~~p~L~~L~l~~c~--~~~~~~---i-----~~p~L~~L~ls~c 246 (286)
.. .-..|++|++.++. .+.+.+ + ..+.|..|+++.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 43 34558888887653 233221 1 1367777777643
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.59 E-value=0.0014 Score=51.05 Aligned_cols=83 Identities=18% Similarity=0.177 Sum_probs=58.9
Q ss_pred CCceEEEEEeccCCCcccCC-CcchhccCCccEEEEeceeeccCCcC-cccCCCccEEEcceeeeChHHHHHHHhcCCCc
Q 042585 95 RNVEELEVEHLRRLDTWNSL-PQMVLRSKSIKVLTLQNYKLESLGND-DVKLLSLRKLHLSDVYADDQVMNNLFAQSPLL 172 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~L 172 (286)
.++++|+++... -..+ |..+...++|+.|+|+++.+....+. ...+++|++|+|+++.++.-. ...+..+++|
T Consensus 33 ~~L~~L~Ls~N~----l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNNQ----ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP-RGAFDNLKSL 107 (174)
T ss_dssp TTCSEEECCSSC----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTC
T ss_pred CCCcEEEeCCCC----ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeC-HHHhccccCC
Confidence 578889988221 1233 45567889999999999988654333 357999999999999844211 1235568999
Q ss_pred ceEEeeeccc
Q 042585 173 QHLEFVRYNN 182 (286)
Q Consensus 173 e~L~l~~c~~ 182 (286)
+.|++.+..+
T Consensus 108 ~~L~L~~N~~ 117 (174)
T 2r9u_A 108 THIYLYNNPW 117 (174)
T ss_dssp SEEECCSSCB
T ss_pred CEEEeCCCCc
Confidence 9999987643
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.53 E-value=0.0036 Score=55.55 Aligned_cols=57 Identities=16% Similarity=0.215 Sum_probs=27.8
Q ss_pred hhccCCccEEEEeceeeccCCcCcccCCCccEEEcceee--eChHHHHHHHhcCCCcceEEee
Q 042585 118 VLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY--ADDQVMNNLFAQSPLLQHLEFV 178 (286)
Q Consensus 118 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le~L~l~ 178 (286)
+..|++|+.+++..+.+.........+.+|+++.|.... +.+.+ +..|++|+.+++.
T Consensus 176 F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~a----F~~~~~L~~l~l~ 234 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQA----FLKTSQLKTIEIP 234 (401)
T ss_dssp TTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTT----TTTCTTCCCEECC
T ss_pred hhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhH----hhCCCCCCEEecC
Confidence 345667777777654442221223334555555554322 33332 2346666666653
No 156
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=96.45 E-value=0.0013 Score=57.12 Aligned_cols=59 Identities=12% Similarity=0.149 Sum_probs=26.7
Q ss_pred CCceEEEEEeccCCCcccCCCcc-hhccCCccEEEE-eceeeccCC-cCcccCCCccEEEcceee
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQM-VLRSKSIKVLTL-QNYKLESLG-NDDVKLLSLRKLHLSDVY 156 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L~L-~~~~~~~~~-~~~~~~~~L~~L~L~~~~ 156 (286)
.++++|+++... ....+|.. +..+++++.+.. .++.+.... .....+++|++|++.++.
T Consensus 54 ~~L~~L~Ls~N~---i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~ 115 (350)
T 4ay9_X 54 GDLEKIEISQND---VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115 (350)
T ss_dssp TTCCEEEEECCT---TCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC
T ss_pred CCCCEEECcCCC---CCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccc
Confidence 567777777211 01122222 223445544333 333332211 223446667777766665
No 157
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.44 E-value=0.0017 Score=55.76 Aligned_cols=73 Identities=21% Similarity=0.220 Sum_probs=38.8
Q ss_pred CCCccEEEcceee---eChHHHHHHHhcCCCcceEEeeeccc-c--ceeecccCCc-eEEecCc--ccChhhHHHHHhcC
Q 042585 144 LLSLRKLHLSDVY---ADDQVMNNLFAQSPLLQHLEFVRYNN-L--VNVSSCKNLK-HLDLCDG--SYTDEWLNSQISGL 214 (286)
Q Consensus 144 ~~~L~~L~L~~~~---~~~~~l~~l~~~cp~Le~L~l~~c~~-~--~~~~~~~~L~-~L~l~~~--~~~~~~l~~~~~~~ 214 (286)
|++|++|+|.++. +.+.+ +.+|++|++|++...-. + ..|..|++|+ .+++.+. .+.+ ....+|
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~a----F~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~~l~~I~~----~aF~~c 296 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFT----FAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPASVTAIEF----GAFMGC 296 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTT----TTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECTTCCEECT----TTTTTC
T ss_pred cCCCeEEECCCCCcceecHhh----hhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcccceEEch----hhhhCC
Confidence 6667777776643 44333 34577777776654210 0 1222366676 6766541 1222 233567
Q ss_pred CCccEEeccc
Q 042585 215 PLLEQLHISL 224 (286)
Q Consensus 215 p~L~~L~l~~ 224 (286)
++|+.+++.+
T Consensus 297 ~~L~~l~l~~ 306 (329)
T 3sb4_A 297 DNLRYVLATG 306 (329)
T ss_dssp TTEEEEEECS
T ss_pred ccCCEEEeCC
Confidence 7777777654
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.25 E-value=0.0029 Score=54.60 Aligned_cols=90 Identities=21% Similarity=0.188 Sum_probs=62.6
Q ss_pred ccCCCcchhccCCccEEEEec-eeeccCCc-CcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccccceee-
Q 042585 111 WNSLPQMVLRSKSIKVLTLQN-YKLESLGN-DDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNNLVNVS- 187 (286)
Q Consensus 111 ~~~l~~~~~~~~~L~~L~L~~-~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~~~~~~- 187 (286)
-..+|. +....+|+.|+|++ +.+....+ ....+++|+.|+|+++.++.-. ...+..+++|+.|+|++.... .+.
T Consensus 21 l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~-~~~~ 97 (347)
T 2ifg_A 21 LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNALE-SLSW 97 (347)
T ss_dssp CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCCS-CCCS
T ss_pred CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCccc-eeCH
Confidence 345777 77889999999996 77754323 3557999999999999844311 123467999999999976432 221
Q ss_pred ---cccCCceEEecCcccC
Q 042585 188 ---SCKNLKHLDLCDGSYT 203 (286)
Q Consensus 188 ---~~~~L~~L~l~~~~~~ 203 (286)
...+|+.|++.++.+.
T Consensus 98 ~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 98 KTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp TTTCSCCCCEEECCSSCCC
T ss_pred HHcccCCceEEEeeCCCcc
Confidence 1234999999876544
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.69 E-value=0.0076 Score=50.36 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=42.9
Q ss_pred CCceEEEEE-eccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCC--CccEEEcceeeeCh------HHHHHH
Q 042585 95 RNVEELEVE-HLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLL--SLRKLHLSDVYADD------QVMNNL 165 (286)
Q Consensus 95 ~~l~~L~l~-~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~--~L~~L~L~~~~~~~------~~l~~l 165 (286)
..++.|+|+ +.- ..-..+|..+..+++|+.|+|+++.+..+ .....+. +|++|.|.++.+.. .-...+
T Consensus 170 ~~L~~L~Ls~N~l--~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 170 PELLSLNLSNNRL--YRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp TTCCEEECTTSCC--CCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred CCCCEEECCCCCC--CCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 467777776 211 01123444555677777777777666432 1122222 67777777766332 223345
Q ss_pred HhcCCCcceEEe
Q 042585 166 FAQSPLLQHLEF 177 (286)
Q Consensus 166 ~~~cp~Le~L~l 177 (286)
...+|+|+.|+=
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 566777776654
No 160
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.49 E-value=0.021 Score=45.35 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=11.8
Q ss_pred CCccEEEcceeeeChHHHHHHHh
Q 042585 145 LSLRKLHLSDVYADDQVMNNLFA 167 (286)
Q Consensus 145 ~~L~~L~L~~~~~~~~~l~~l~~ 167 (286)
..|++|+|.++.+++.+...+..
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHH
T ss_pred CccCeEecCCCcCCHHHHHHHHH
Confidence 44555555555555555444443
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.93 E-value=0.022 Score=50.06 Aligned_cols=11 Identities=36% Similarity=0.582 Sum_probs=5.2
Q ss_pred hcCCCccEEec
Q 042585 212 SGLPLLEQLHI 222 (286)
Q Consensus 212 ~~~p~L~~L~l 222 (286)
.+|.+|+.+.+
T Consensus 331 ~~C~~L~~i~i 341 (394)
T 4gt6_A 331 AGCEQLERIAI 341 (394)
T ss_dssp TTCTTCCEEEE
T ss_pred hCCCCCCEEEE
Confidence 34444555444
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=94.52 E-value=0.044 Score=47.05 Aligned_cols=97 Identities=18% Similarity=0.080 Sum_probs=60.5
Q ss_pred EEEEece-eeccCCcCcccCCCccEEEcce-eeeChHHHHHHHhcCCCcceEEeeecccc----ceeecccCCceEEecC
Q 042585 126 VLTLQNY-KLESLGNDDVKLLSLRKLHLSD-VYADDQVMNNLFAQSPLLQHLEFVRYNNL----VNVSSCKNLKHLDLCD 199 (286)
Q Consensus 126 ~L~L~~~-~~~~~~~~~~~~~~L~~L~L~~-~~~~~~~l~~l~~~cp~Le~L~l~~c~~~----~~~~~~~~L~~L~l~~ 199 (286)
.+++++. .+...+. ...+++|++|+|++ +.++.-.- ..+..+++|+.|+|+++... ..+..+++|++|++++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3455555 5644433 56688899999986 66432111 12456899999999976432 1233488999999998
Q ss_pred cccChhhHHHHHhcCCCccEEeccccc
Q 042585 200 GSYTDEWLNSQISGLPLLEQLHISLCN 226 (286)
Q Consensus 200 ~~~~~~~l~~~~~~~p~L~~L~l~~c~ 226 (286)
+.++.-. ..+.... .|+.|++.++.
T Consensus 90 N~l~~~~-~~~~~~~-~L~~l~l~~N~ 114 (347)
T 2ifg_A 90 NALESLS-WKTVQGL-SLQELVLSGNP 114 (347)
T ss_dssp SCCSCCC-STTTCSC-CCCEEECCSSC
T ss_pred CccceeC-HHHcccC-CceEEEeeCCC
Confidence 7665311 0112223 39999988853
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.59 E-value=0.077 Score=46.57 Aligned_cols=100 Identities=12% Similarity=0.168 Sum_probs=68.0
Q ss_pred hhccCCccEEEEeceeeccCCcCcccCCCccEEEcceee--eChHHHHHHHhcCCCcceEEeeec-ccc--ceeecccCC
Q 042585 118 VLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY--ADDQVMNNLFAQSPLLQHLEFVRY-NNL--VNVSSCKNL 192 (286)
Q Consensus 118 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le~L~l~~c-~~~--~~~~~~~~L 192 (286)
+..|.+|+.+.+.............+|++|+.+.+.... +.+.+ +.+|++|+++++... ..+ ..|..|.+|
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPESV----FAGCISLKSIDIPEGITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEECCTTCCEECTTTTTTCTTC
T ss_pred eeecccccEEecccccceecCcccccccccccccCCCcccccCcee----ecCCCCcCEEEeCCcccEehHhHhhCCCCC
Confidence 447899999988663322211445679999999997533 66654 467999999999642 111 234448999
Q ss_pred ceEEecCc--ccChhhHHHHHhcCCCccEEecccc
Q 042585 193 KHLDLCDG--SYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 193 ~~L~l~~~--~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
+.+.+-.. .+.+ ....+|++|+.+.+.+.
T Consensus 337 ~~i~ip~sv~~I~~----~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 337 ERIAIPSSVTKIPE----SAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CEEEECTTCCBCCG----GGGTTCTTCCEEEESSC
T ss_pred CEEEECcccCEEhH----hHhhCCCCCCEEEECCc
Confidence 99999532 3444 33578999999999874
No 164
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=92.27 E-value=0.25 Score=43.62 Aligned_cols=121 Identities=12% Similarity=0.121 Sum_probs=74.9
Q ss_pred CCceEEEEEeccCCCcccCCCcchhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChH----HHHHHHhcCC
Q 042585 95 RNVEELEVEHLRRLDTWNSLPQMVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQ----VMNNLFAQSP 170 (286)
Q Consensus 95 ~~l~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~----~l~~l~~~cp 170 (286)
.+++++++. ..-..++..++...+|+.+.+...........+.+|++|+++.+.+...... .-...+.+|+
T Consensus 226 ~~L~~l~l~-----~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~ 300 (401)
T 4fdw_A 226 SQLKTIEIP-----ENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP 300 (401)
T ss_dssp TTCCCEECC-----TTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT
T ss_pred CCCCEEecC-----CCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc
Confidence 467777775 1223445556666789999996532211114556799999999977542100 0112356799
Q ss_pred CcceEEeeeccc-c--ceeecccCCceEEecCc--ccChhhHHHHHhcCCCccEEecccc
Q 042585 171 LLQHLEFVRYNN-L--VNVSSCKNLKHLDLCDG--SYTDEWLNSQISGLPLLEQLHISLC 225 (286)
Q Consensus 171 ~Le~L~l~~c~~-~--~~~~~~~~L~~L~l~~~--~~~~~~l~~~~~~~p~L~~L~l~~c 225 (286)
+|+.+.+...-. + ..|..|++|+.+.+... .+.. ....+| +|+.+.+.+.
T Consensus 301 ~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~----~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 301 KLARFEIPESIRILGQGLLGGNRKVTQLTIPANVTQINF----SAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TCCEECCCTTCCEECTTTTTTCCSCCEEEECTTCCEECT----TSSSSS-CCCEEEECCS
T ss_pred cCCeEEeCCceEEEhhhhhcCCCCccEEEECccccEEcH----HhCCCC-CCCEEEEcCC
Confidence 999999974211 1 22333899999999643 2333 234577 9999999885
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.76 E-value=0.18 Score=44.16 Aligned_cols=118 Identities=19% Similarity=0.270 Sum_probs=74.9
Q ss_pred hhccCCccEEEEeceeeccCCcCcccCCCccEEEcceeeeChHHHHHHHhcCCCcceEEeeeccc-c--ceeecccCCce
Q 042585 118 VLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVYADDQVMNNLFAQSPLLQHLEFVRYNN-L--VNVSSCKNLKH 194 (286)
Q Consensus 118 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~l~~~cp~Le~L~l~~c~~-~--~~~~~~~~L~~ 194 (286)
+..|..|+.+.+..............++.|+.+.+....+.+.. ...|++|+.+.+...-. + ..|..|.+|+.
T Consensus 249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~----F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~ 324 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKT----FYGCSSLTEVKLLDSVKFIGEEAFESCTSLVS 324 (394)
T ss_dssp TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTT----TTTCTTCCEEEECTTCCEECTTTTTTCTTCCE
T ss_pred ccccccceeEEcCCCcceeeccccccccccceeccCceeecccc----ccccccccccccccccceechhhhcCCCCCCE
Confidence 45788899988876433221144556888888888776655433 45689999998864211 1 22334888999
Q ss_pred EEecCc--ccChhhHHHHHhcCCCccEEecccccCcccccc----ccccccEEEeec
Q 042585 195 LDLCDG--SYTDEWLNSQISGLPLLEQLHISLCNNIESITI----SSLRLKKLIINT 245 (286)
Q Consensus 195 L~l~~~--~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i----~~p~L~~L~ls~ 245 (286)
+++... .+.+ ....+|.+|+.+.+... ++.++- .+++|+.+.+..
T Consensus 325 i~lp~~v~~I~~----~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 325 IDLPYLVEEIGK----RSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp ECCCTTCCEECT----TTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred EEeCCcccEEhH----HhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 988532 2433 23468899999988652 444432 257888888764
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=90.77 E-value=0.58 Score=40.85 Aligned_cols=118 Identities=12% Similarity=0.122 Sum_probs=68.8
Q ss_pred chhccCCccEEEEeceeeccCCcCcccCCCccEEEcceee--eChHHHHHHHhcCCCcceEEeeecccc-ceeecccCCc
Q 042585 117 MVLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY--ADDQVMNNLFAQSPLLQHLEFVRYNNL-VNVSSCKNLK 193 (286)
Q Consensus 117 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le~L~l~~c~~~-~~~~~~~~L~ 193 (286)
..+.+.+|+.+.+..............+++|+.+.+.... +.... ...|+.|+.+........ ..+..+.+|+
T Consensus 225 ~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~----F~~~~~l~~~~~~~~~i~~~~F~~~~~L~ 300 (394)
T 4fs7_A 225 FALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSL----FYNCSGLKKVIYGSVIVPEKTFYGCSSLT 300 (394)
T ss_dssp TTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCT----TTTCTTCCEEEECSSEECTTTTTTCTTCC
T ss_pred hhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccc----cccccccceeccCceeecccccccccccc
Confidence 3456778888888653221111345568889988887554 44433 356888888876532111 2233388899
Q ss_pred eEEecCc--ccChhhHHHHHhcCCCccEEecccccCccccccc----cccccEEEee
Q 042585 194 HLDLCDG--SYTDEWLNSQISGLPLLEQLHISLCNNIESITIS----SLRLKKLIIN 244 (286)
Q Consensus 194 ~L~l~~~--~~~~~~l~~~~~~~p~L~~L~l~~c~~~~~~~i~----~p~L~~L~ls 244 (286)
.+.+... .+.+ ....+|.+|+.+.+.. .++.++-. +.+|+.+.+.
T Consensus 301 ~i~l~~~i~~I~~----~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 301 EVKLLDSVKFIGE----EAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp EEEECTTCCEECT----TTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCC
T ss_pred ccccccccceech----hhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEEC
Confidence 8888643 2333 2346788898888753 23333222 3566666653
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=89.40 E-value=0.57 Score=40.53 Aligned_cols=96 Identities=13% Similarity=0.143 Sum_probs=51.4
Q ss_pred ccCCccEEEEeceeeccCCcCcccCCCccEEEcceee--eChHHHHHHHhcCCCcceEEeeecccc---ceeecccCCce
Q 042585 120 RSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY--ADDQVMNNLFAQSPLLQHLEFVRYNNL---VNVSSCKNLKH 194 (286)
Q Consensus 120 ~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le~L~l~~c~~~---~~~~~~~~L~~ 194 (286)
.+.+|+.+.+..............+.+|+.+.+.... +++.. ...|.+|+.+.+...-.. ..+..|++|+.
T Consensus 215 ~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~a----F~~~~~l~~i~l~~~i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 215 YGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNVTSIGSFL----LQNCTALKTLNFYAKVKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTCCEECTTT----TTTCTTCCEEEECCCCSEECTTTTTTCTTCCE
T ss_pred cccccceeeeccceeEEccccccCCccceEEEcCCCccEeCccc----cceeehhccccccccceecccccccccccccc
Confidence 4455666555432111111234456777777775432 44433 345777777777532111 12233788888
Q ss_pred EEecCcc---cChhhHHHHHhcCCCccEEecc
Q 042585 195 LDLCDGS---YTDEWLNSQISGLPLLEQLHIS 223 (286)
Q Consensus 195 L~l~~~~---~~~~~l~~~~~~~p~L~~L~l~ 223 (286)
+.+.+.. +.+ ....+|++|+.+.+.
T Consensus 291 i~l~~~~i~~I~~----~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 291 VVMDNSAIETLEP----RVFMDCVKLSSVTLP 318 (379)
T ss_dssp EEECCTTCCEECT----TTTTTCTTCCEEECC
T ss_pred ccccccccceehh----hhhcCCCCCCEEEcC
Confidence 8886543 333 234677888888774
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=86.24 E-value=0.57 Score=40.51 Aligned_cols=98 Identities=9% Similarity=0.017 Sum_probs=63.1
Q ss_pred hhccCCccEEEEeceeeccCCcCcccCCCccEEEcceee--eChHHHHHHHhcCCCcceEEeeeccc--c--ceeecccC
Q 042585 118 VLRSKSIKVLTLQNYKLESLGNDDVKLLSLRKLHLSDVY--ADDQVMNNLFAQSPLLQHLEFVRYNN--L--VNVSSCKN 191 (286)
Q Consensus 118 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le~L~l~~c~~--~--~~~~~~~~ 191 (286)
+..|.+|+.+.+..............+.+|+.+.+.... ++... ...|++|+.+.+.+..- + ..|..|.+
T Consensus 236 f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~i~~i~~~a----F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 236 FYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAKVKTVPYLL----CSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCCCSEECTTT----TTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred ccCCccceEEEcCCCccEeCccccceeehhccccccccceeccccc----cccccccccccccccccceehhhhhcCCCC
Confidence 457889999988663211111345568899999986543 55443 46799999999975421 1 23444899
Q ss_pred CceEEecCc--ccChhhHHHHHhcCCCccEEecc
Q 042585 192 LKHLDLCDG--SYTDEWLNSQISGLPLLEQLHIS 223 (286)
Q Consensus 192 L~~L~l~~~--~~~~~~l~~~~~~~p~L~~L~l~ 223 (286)
|+.+++-.. .+.+. ...+|.+|+.+.+.
T Consensus 312 L~~i~lp~~l~~I~~~----aF~~C~~L~~i~ip 341 (379)
T 4h09_A 312 LSSVTLPTALKTIQVY----AFKNCKALSTISYP 341 (379)
T ss_dssp CCEEECCTTCCEECTT----TTTTCTTCCCCCCC
T ss_pred CCEEEcCccccEEHHH----HhhCCCCCCEEEEC
Confidence 999999532 34442 23577777777764
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=66.23 E-value=4.7 Score=29.09 Aligned_cols=42 Identities=24% Similarity=0.095 Sum_probs=27.1
Q ss_pred CCccEEEEeceeeccCCc-CcccCCCccEEEcceee-eChHHHH
Q 042585 122 KSIKVLTLQNYKLESLGN-DDVKLLSLRKLHLSDVY-ADDQVMN 163 (286)
Q Consensus 122 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~-~~~~~l~ 163 (286)
++|+.|+|+++.+....+ ....+++|++|.|.++. .-|-.+.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~ 74 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLV 74 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGH
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccH
Confidence 467888888877754323 23457788888888777 4444433
No 170
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=35.79 E-value=23 Score=20.42 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=14.2
Q ss_pred CcccCCCCCHHHHHHHHcc
Q 042585 13 NVDRISALPQPILQLIMSF 31 (286)
Q Consensus 13 ~~d~i~~LPdeil~~Ils~ 31 (286)
+.+-|..||.||..+|+|-
T Consensus 17 D~eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 17 DQEVFKQLPADIQEEILSG 35 (48)
T ss_dssp CGGGTTTSCHHHHHHHTTC
T ss_pred CHHHHHHCcHHHHHHHHhc
Confidence 4556788888888888774
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=25.42 E-value=46 Score=22.54 Aligned_cols=35 Identities=11% Similarity=0.092 Sum_probs=19.5
Q ss_pred cccCCCccEEEcceee--eChHHHHHHHhcCCCcceEEeee
Q 042585 141 DVKLLSLRKLHLSDVY--ADDQVMNNLFAQSPLLQHLEFVR 179 (286)
Q Consensus 141 ~~~~~~L~~L~L~~~~--~~~~~l~~l~~~cp~Le~L~l~~ 179 (286)
+.+|.+|+++.|-... +++.++ ..|.+|+.+.+.+
T Consensus 16 F~~c~~L~~i~iP~~v~~Ig~~aF----~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPNIGLLYDGMF----SGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTTSSCCCTTSS----TTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCchheEcHHHH----hccCCccEEEEcC
Confidence 3346666666664332 555443 3477777776654
Done!