Query 042587
Match_columns 99
No_of_seqs 107 out of 122
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 13:06:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042587.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042587hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1btq_A BAND 3 anion transport 36.3 17 0.00057 19.2 1.4 11 5-15 2-12 (26)
2 3arc_X Photosystem II PSBX pro 32.7 38 0.0013 19.5 2.6 21 34-54 2-22 (39)
3 3bz1_X Photosystem II PSBX pro 24.8 59 0.002 19.6 2.6 22 33-54 11-32 (50)
4 3s8f_C Cytochrome C oxidase po 23.3 49 0.0017 18.4 1.9 13 3-15 17-29 (34)
5 1yew_A Particulate methane mon 19.6 1.5E+02 0.005 24.4 4.8 35 3-37 164-220 (382)
6 3rfr_A PMOB; membrane, oxidore 12.4 2.9E+02 0.01 22.9 4.8 19 16-34 227-245 (419)
7 1rh5_C Secbeta; protein transl 7.2 3.6E+02 0.012 15.9 2.7 17 40-56 33-49 (53)
8 3arc_U Photosystem II 12 kDa e 5.8 2.4E+02 0.0082 18.3 1.4 10 55-64 45-54 (97)
9 2wwb_C SEC61BETA, protein tran 5.7 3.9E+02 0.013 17.8 2.4 17 41-57 74-90 (96)
10 1bzk_A Protein (BAND 3 anion t 5.1 3.4E+02 0.012 15.3 1.6 11 5-15 18-28 (43)
No 1
>1btq_A BAND 3 anion transport protein; NMR {} SCOP: j.35.1.1 PDB: 1btr_A
Probab=36.32 E-value=17 Score=19.21 Aligned_cols=11 Identities=27% Similarity=0.501 Sum_probs=8.4
Q ss_pred HHHHHHHHHHh
Q 042587 5 LLSSLIFAHIF 15 (99)
Q Consensus 5 l~aaWlfLYf~ 15 (99)
.+++++|+||.
T Consensus 2 ~laa~~FlyFa 12 (26)
T 1btq_A 2 VLAAVIFIYFA 12 (26)
T ss_pred hHHHHHHHHHH
Confidence 36788888885
No 2
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=32.71 E-value=38 Score=19.51 Aligned_cols=21 Identities=19% Similarity=0.292 Sum_probs=16.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHh
Q 042587 34 LTSIRSVLILGLMAGDGLSCA 54 (99)
Q Consensus 34 lT~v~~nl~~al~ig~~lV~~ 54 (99)
+|....|.+.++..|.+++.+
T Consensus 2 mTpSL~nFl~Sl~aG~vvvv~ 22 (39)
T 3arc_X 2 ITPSLKGFFIGLLSGAVVLGL 22 (39)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHHHHH
Confidence 467778888888888876655
No 3
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=24.78 E-value=59 Score=19.63 Aligned_cols=22 Identities=18% Similarity=0.246 Sum_probs=18.1
Q ss_pred HhhhhHHHHHHHHHHHHHHHHh
Q 042587 33 FLTSIRSVLILGLMAGDGLSCA 54 (99)
Q Consensus 33 ~lT~v~~nl~~al~ig~~lV~~ 54 (99)
-+|....|.+.++..|.+++.+
T Consensus 11 ~mTpSL~NFl~SlvaG~vVvv~ 32 (50)
T 3bz1_X 11 TITPSLKGFFIGLLSGAVVLGL 32 (50)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHH
Confidence 3688889999999999886665
No 4
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=23.32 E-value=49 Score=18.45 Aligned_cols=13 Identities=15% Similarity=0.002 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHh
Q 042587 3 LGLLSSLIFAHIF 15 (99)
Q Consensus 3 l~l~aaWlfLYf~ 15 (99)
+.+.++|++.|.+
T Consensus 17 ~~I~i~W~~vf~l 29 (34)
T 3s8f_C 17 LTILVFWLGVYAV 29 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHee
Confidence 3567899998864
No 5
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=19.60 E-value=1.5e+02 Score=24.40 Aligned_cols=35 Identities=9% Similarity=0.081 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHh----------------------cChhhhHHHHHHHHHHHHhhhh
Q 042587 3 LGLLSSLIFAHIF----------------------RDHETLSVLIILSVFIIFLTSI 37 (99)
Q Consensus 3 l~l~aaWlfLYf~----------------------sDr~vL~~L~v~Tv~~l~lT~v 37 (99)
.++.++|+.-++. .||.+-.++.+.|+++++....
T Consensus 164 ~~~g~aWll~W~~rp~fipR~~~v~ag~~~~Lit~~Drkv~~~~~~~t~~lV~~g~~ 220 (382)
T 1yew_A 164 FAIGVAWIGYWSRRPIFIPRLLMVDAGRADELVSATDRKVAMGFLAATILIVVMAMS 220 (382)
T ss_dssp HHHHHHHHHHHHSSCCSHHHHHHHHSSCSCTTSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccchhhHHHHhccCcccccCcccceehhHHHHHHHHHhhhhHh
Confidence 3567788877763 7888888888888877764443
No 6
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=12.38 E-value=2.9e+02 Score=22.91 Aligned_cols=19 Identities=11% Similarity=0.359 Sum_probs=13.2
Q ss_pred cChhhhHHHHHHHHHHHHh
Q 042587 16 RDHETLSVLIILSVFIIFL 34 (99)
Q Consensus 16 sDr~vL~~L~v~Tv~~l~l 34 (99)
.||.+-+++.+.|+++++.
T Consensus 227 ~Drkv~~~~~~~tlv~v~~ 245 (419)
T 3rfr_A 227 DDRRIGAIVLALTILATIV 245 (419)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred ccceeehhHHHHHHHHHHH
Confidence 6787777777777666653
No 7
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=7.24 E-value=3.6e+02 Score=15.87 Aligned_cols=17 Identities=6% Similarity=-0.363 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhhc
Q 042587 40 VLILGLMAGDGLSCAHG 56 (99)
Q Consensus 40 nl~~al~ig~~lV~~Ha 56 (99)
.+..++.+++.++.+|-
T Consensus 33 Vl~~si~~i~~V~~L~~ 49 (53)
T 1rh5_C 33 VIGVTVAFVIIEAILTY 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 44555666666666663
No 8
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=5.83 E-value=2.4e+02 Score=18.26 Aligned_cols=10 Identities=20% Similarity=0.544 Sum_probs=9.6
Q ss_pred hcccccCCCc
Q 042587 55 HGVFRVLEDL 64 (99)
Q Consensus 55 HaAfR~~dDL 64 (99)
||-|++.|||
T Consensus 45 ~GpF~s~edL 54 (97)
T 3arc_U 45 NAPYESVEDV 54 (97)
T ss_dssp HCCCSSGGGG
T ss_pred cCCCCCHHHH
Confidence 9999999997
No 9
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=5.67 E-value=3.9e+02 Score=17.76 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhhcc
Q 042587 41 LILGLMAGDGLSCAHGV 57 (99)
Q Consensus 41 l~~al~ig~~lV~~HaA 57 (99)
|+.+++..+.++.+|--
T Consensus 74 Lv~sl~Fi~~Vi~Lhi~ 90 (96)
T 2wwb_C 74 LVMSLLFIASVFMLHIW 90 (96)
T ss_dssp HHHHHHHHHHHHHHSCS
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 44455555556666643
No 10
>1bzk_A Protein (BAND 3 anion transport protein); human erythrocyte anion transporter, transmembrane, synthetic peptide; NMR {Synthetic} SCOP: j.35.1.1
Probab=5.06 E-value=3.4e+02 Score=15.33 Aligned_cols=11 Identities=27% Similarity=0.501 Sum_probs=7.2
Q ss_pred HHHHHHHHHHh
Q 042587 5 LLSSLIFAHIF 15 (99)
Q Consensus 5 l~aaWlfLYf~ 15 (99)
++++.+|+||.
T Consensus 18 ~laa~~fiyFa 28 (43)
T 1bzk_A 18 VLAAVIFIYFA 28 (43)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45667777765
Done!