Query 042587
Match_columns 99
No_of_seqs 107 out of 122
Neff 3.8
Searched_HMMs 13730
Date Mon Mar 25 13:06:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042587.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042587hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fcla1 d.218.1.11 (A:1-157) H 17.0 20 0.0015 22.5 0.9 23 47-69 27-51 (157)
2 d1oede_ f.36.1.1 (E:) Acetylch 11.8 1.7E+02 0.013 18.7 4.7 31 3-33 14-48 (260)
3 d1oedc_ f.36.1.1 (C:) Acetylch 7.6 2.7E+02 0.02 17.5 4.6 31 3-33 14-47 (260)
4 d3bzka1 a.60.2.6 (A:474-563) T 6.1 67 0.0049 18.8 0.4 12 53-64 56-67 (90)
5 d2oqza1 b.100.1.1 (A:35-253) H 5.9 74 0.0054 21.1 0.6 9 90-98 191-199 (219)
6 d2h8aa1 f.56.1.1 (A:9-147) Mic 5.9 59 0.0043 20.3 0.0 10 55-64 32-41 (139)
7 d1qwza_ b.100.1.1 (A:) Sortase 5.5 83 0.0061 21.3 0.7 11 89-99 205-215 (235)
8 d1oedb_ f.36.1.1 (B:) Acetylch 4.9 4E+02 0.029 16.6 4.7 31 3-33 14-47 (250)
9 d1yj5a1 c.108.1.9 (A:144-338) 3.8 84 0.0061 20.8 -0.4 14 58-71 177-190 (195)
10 d2edua1 a.60.2.7 (A:8-98) KIF2 3.7 1.2E+02 0.0085 17.9 0.3 11 54-64 55-65 (91)
No 1
>d2fcla1 d.218.1.11 (A:1-157) Hypothetical protein TM1012 {Thermotoga maritima [TaxId: 2336]}
Probab=17.04 E-value=20 Score=22.50 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=17.2
Q ss_pred HHHHHHHhhcccccCCC--cccccC
Q 042587 47 AGDGLSCAHGVFRVLED--LVLDEQ 69 (99)
Q Consensus 47 ig~~lV~~HaAfR~~dD--LFlDe~ 69 (99)
+|...+.+||.=|.|.| ++.+++
T Consensus 27 ~Gg~A~~~~G~~r~t~DiDi~v~~~ 51 (157)
T d2fcla1 27 TGSLSFALQGVPVEVHDIDIQTDEE 51 (157)
T ss_dssp EHHHHHHHTTCCCCCCSEEEEECHH
T ss_pred EhHHHHHHCCCCCCCCceeEEEccc
Confidence 46666788999999995 556554
No 2
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=11.82 E-value=1.7e+02 Score=18.71 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHh----cChhhhHHHHHHHHHHHH
Q 042587 3 LGLLSSLIFAHIF----RDHETLSVLIILSVFIIF 33 (99)
Q Consensus 3 l~l~aaWlfLYf~----sDr~vL~~L~v~Tv~~l~ 33 (99)
+..+.+|+-.|+= .||..|+.-.++|..++.
T Consensus 14 li~~ls~~~F~lp~~~~g~Rv~l~it~lLs~~~~~ 48 (260)
T d1oede_ 14 LISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFL 48 (260)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHheEecCCCCCCcEEeehhHHHHHHHHH
Confidence 4566778777765 589998888887766654
No 3
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=7.60 E-value=2.7e+02 Score=17.49 Aligned_cols=31 Identities=6% Similarity=0.080 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHh---cChhhhHHHHHHHHHHHH
Q 042587 3 LGLLSSLIFAHIF---RDHETLSVLIILSVFIIF 33 (99)
Q Consensus 3 l~l~aaWlfLYf~---sDr~vL~~L~v~Tv~~l~ 33 (99)
+..+.+|+-.|+= .||..|.+-.++|..++.
T Consensus 14 ~~~~l~~~~f~lp~~~~~r~~l~it~lLs~~vf~ 47 (260)
T d1oedc_ 14 LISFLASLAFYLPAESGEKMSTAISVLLAQAVFL 47 (260)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHeeeCCCCCCcEEeeHHHHHHHHHHH
Confidence 4456677776664 788888877777665543
No 4
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=6.07 E-value=67 Score=18.85 Aligned_cols=12 Identities=42% Similarity=0.722 Sum_probs=10.4
Q ss_pred HhhcccccCCCc
Q 042587 53 CAHGVFRVLEDL 64 (99)
Q Consensus 53 ~~HaAfR~~dDL 64 (99)
--||.|++.|||
T Consensus 56 ~~~G~f~s~edL 67 (90)
T d3bzka1 56 DANGAFRTRDEL 67 (90)
T ss_dssp HHHCSCSSSGGG
T ss_pred HHcCCCCCHHHH
Confidence 458999999998
No 5
>d2oqza1 b.100.1.1 (A:35-253) Hypothetical protein BA4783 {Bacillus anthracis [TaxId: 1392]}
Probab=5.93 E-value=74 Score=21.08 Aligned_cols=9 Identities=44% Similarity=0.822 Sum_probs=5.9
Q ss_pred hhheeeecc
Q 042587 90 AATLTISTC 98 (99)
Q Consensus 90 ~~~~~~~~~ 98 (99)
---+|+|||
T Consensus 191 d~ilTLsTC 199 (219)
T d2oqza1 191 DQIVTLSTC 199 (219)
T ss_dssp CEEEEEEC-
T ss_pred CcEEEEECC
Confidence 345899999
No 6
>d2h8aa1 f.56.1.1 (A:9-147) Microsomal glutathione S-transferase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.86 E-value=59 Score=20.27 Aligned_cols=10 Identities=40% Similarity=0.408 Sum_probs=3.2
Q ss_pred hcccccCCCc
Q 042587 55 HGVFRVLEDL 64 (99)
Q Consensus 55 HaAfR~~dDL 64 (99)
|.+|++|||.
T Consensus 32 ~k~f~npED~ 41 (139)
T d2h8aa1 32 NKVFANPEDC 41 (139)
T ss_dssp CTTC------
T ss_pred HhhcCChHhh
Confidence 7788888885
No 7
>d1qwza_ b.100.1.1 (A:) Sortase B {Staphylococcus aureus [TaxId: 1280]}
Probab=5.46 E-value=83 Score=21.33 Aligned_cols=11 Identities=36% Similarity=0.637 Sum_probs=7.8
Q ss_pred hhhheeeeccC
Q 042587 89 TAATLTISTCV 99 (99)
Q Consensus 89 ~~~~~~~~~~~ 99 (99)
.-.-+|+|||.
T Consensus 205 ~d~ilTLsTC~ 215 (235)
T d1qwza_ 205 KDRIMTLSTCE 215 (235)
T ss_dssp TSCEEEEEECC
T ss_pred CCCEEEEECCC
Confidence 34568999993
No 8
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=4.85 E-value=4e+02 Score=16.61 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHh---cChhhhHHHHHHHHHHHH
Q 042587 3 LGLLSSLIFAHIF---RDHETLSVLIILSVFIIF 33 (99)
Q Consensus 3 l~l~aaWlfLYf~---sDr~vL~~L~v~Tv~~l~ 33 (99)
+....+|+-.|.= .+|..+..-++++..++.
T Consensus 14 ~i~~l~~~~f~~p~~~~er~~l~it~lL~~~~~~ 47 (250)
T d1oedb_ 14 LISILAILVFYLPPDAGEKMSLSISALLAVTVFL 47 (250)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHheecCCCCCcEEeeHHHHHHHHHHH
Confidence 3455677766655 677777776666655543
No 9
>d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3' phosphatase, middle domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.82 E-value=84 Score=20.79 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=10.8
Q ss_pred cccCCCcccccCCC
Q 042587 58 FRVLEDLVLDEQEP 71 (99)
Q Consensus 58 fR~~dDLFlDe~e~ 71 (99)
|-.||+.|+++.++
T Consensus 177 F~~pee~Fl~~~~~ 190 (195)
T d1yj5a1 177 FATPEEFFLKWPAA 190 (195)
T ss_dssp EECHHHHTTCCCCC
T ss_pred ccCHHHHhcCCCcc
Confidence 66889999987654
No 10
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.73 E-value=1.2e+02 Score=17.86 Aligned_cols=11 Identities=55% Similarity=0.878 Sum_probs=9.6
Q ss_pred hhcccccCCCc
Q 042587 54 AHGVFRVLEDL 64 (99)
Q Consensus 54 ~HaAfR~~dDL 64 (99)
-||-||.-|||
T Consensus 55 ~~G~f~sledL 65 (91)
T d2edua1 55 LHGPFSQVEDL 65 (91)
T ss_dssp HHCCCSSGGGG
T ss_pred HcCCCCCHHHH
Confidence 48999999997
Done!