BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042589
(429 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 16/157 (10%)
Query: 80 IQVFDELVDDRNPHVYKYVYNGREPRI----STFGQDVNAFTAR--ETPPDPNTYKKKNA 133
++V L+D+ V GR I S+ DV A T + D N
Sbjct: 181 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV------ 234
Query: 134 RRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLR 193
R R +TP+++A + +V+++L+ + I D D K LLLA+E + + LL
Sbjct: 235 -RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 293
Query: 194 SR---EELGETIFWQVDNLGNSALHLAATYGDHRPWH 227
R + G+ + N +S + + ++G +H
Sbjct: 294 KRGASTDCGDLVMTARRNYDHSLVKVLLSHGAKEDFH 330
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 53/122 (43%), Gaps = 13/122 (10%)
Query: 80 IQVFDELVDDRNPHVYKYVYNGREPRI----STFGQDVNAFT--ARETPPDPNTYKKKNA 133
++V L+D+ V GR I S+ DV A T + D N
Sbjct: 161 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV------ 214
Query: 134 RRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLR 193
R R +TP+++A + +V+++L+ + I D D K LLLA+E + + LL
Sbjct: 215 -RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 273
Query: 194 SR 195
R
Sbjct: 274 KR 275
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 129 KKKNARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHV 188
K K +++ +TP+ AA++G T MVK +L+ G L I R+ HV
Sbjct: 70 KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP---LHIAAREGHV 126
Query: 189 YNLLRSREELGETIFWQVDNLGNSALHLAATYGDHR 224
+L E+ E + G + LH+AA YG R
Sbjct: 127 ETVLALLEK--EASQACMTKKGFTPLHVAAKYGKVR 160
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 135 RSRRKETPILVAAKMGVTEMVKKILD 160
R+ ETP++VA+K G +E+VKK+L+
Sbjct: 130 RNLEGETPLIVASKYGRSEIVKKLLE 155
>pdb|1AVB|A Chain A, Arcelin-1 From Phaseolus Vulgaris L
pdb|1AVB|B Chain B, Arcelin-1 From Phaseolus Vulgaris L
Length = 226
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 19 DKSKKDRKEDQLFPSDYVKCFLKGIIDLVQEIELNVIWYAI-YAGIRGIKNVREKKETH 76
D K D + L+PS KC + + L +E+E W ++ ++ G K +E ETH
Sbjct: 161 DSPKNDLRVSLLYPSSEEKCHVSATVPLEKEVE---DWVSVGFSATSGSK--KETTETH 214
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 135 RSRRKETPILVAAKMGVTEMVKKILDTF 162
++ R+ETP+ +AA+ G E K +LD F
Sbjct: 154 QNNREETPLFLAAREGSYETAKVLLDHF 181
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 135 RSRRKETPILVAAKMGVTEMVKKILDTF 162
++ R+ETP+ +AA+ G E K +LD F
Sbjct: 187 QNNREETPLFLAAREGSYETAKVLLDHF 214
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 135 RSRRKETPILVAAKMGVTEMVKKILDTF 162
++ R+ETP+ +AA+ G E K +LD F
Sbjct: 186 QNNREETPLFLAAREGSYETAKVLLDHF 213
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 135 RSRRKETPILVAAKMGVTEMVKKILDTF 162
++ R+ETP+ +AA+ G E K +LD F
Sbjct: 186 QNNREETPLFLAAREGSYETAKVLLDHF 213
>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of
Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) At 1.48 A Resolution
pdb|4AVX|A Chain A, Hepatocyte Growth Factor-Regulated Tyrosine Kinase
Substrate (Hgs-Hrs) Bound To An Ip2 Compound At 1.68 A
Resolution
Length = 226
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 69 VREKKETHTWAIQVFDELVDDRNPHVYKYVYNGREPRISTFGQDVN 114
+R+ +A+ + V+D+NPHV Y E + GQ V+
Sbjct: 36 IRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVH 81
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,157,112
Number of Sequences: 62578
Number of extensions: 477932
Number of successful extensions: 956
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 940
Number of HSP's gapped (non-prelim): 21
length of query: 429
length of database: 14,973,337
effective HSP length: 102
effective length of query: 327
effective length of database: 8,590,381
effective search space: 2809054587
effective search space used: 2809054587
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)