BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042589
(429 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana
GN=At3g12360 PE=2 SV=1
Length = 590
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 66/305 (21%), Positives = 115/305 (37%), Gaps = 78/305 (25%)
Query: 135 RSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRS 194
RS K + +AA+ G E++K +L P +D + L +A++ + + V LL
Sbjct: 229 RSNNK-NALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLD 287
Query: 195 REELGETIFWQVDNLGNSALHLAATYG---------------------DHRPWHTLGAAL 233
+ I Q D N+ALH+A DH+ + L
Sbjct: 288 ADP---AIVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGL 344
Query: 234 QMHWEISW-------------------------------------FQFVKATTKQAH--- 253
+ E S+ + K T K H
Sbjct: 345 PLSEESSYIKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNIS 404
Query: 254 RALVQEGREWLTKTSESCSVLAAFIATVAFATSAAVPGGVDQGSGKPILENKPVFNIFAI 313
+ L + RE + + S +V+A ATVAFA VPGG D G ++ + F IF I
Sbjct: 405 KELRKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGG-DNNDGSAVVVGRASFKIFFI 463
Query: 314 SSLIALSSSVTVLIIFLKILTFRYQENDFVMALPRELLLGLTMLITSIVAILVSFCSGHS 373
+ +AL +S+ V+++ + ++ + V+ + +L+ L S C+ +
Sbjct: 464 FNALALFTSLAVVVVQITLVRGETKAEKRVVEVINKLMW------------LASMCTSVA 511
Query: 374 FLLTN 378
FL ++
Sbjct: 512 FLASS 516
>sp|O44997|DAPK_CAEEL Death-associated protein kinase dapk-1 OS=Caenorhabditis elegans
GN=dapk-1 PE=2 SV=2
Length = 1425
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 135 RSRRKETPILVAAKMGVTEMVKKILD-TFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLR 193
R+ R+ETP+ VAA G + V+ +LD P+ + D K L++A+EN + ++L
Sbjct: 521 RNIREETPLHVAAARGHVDCVQALLDANSPIDAVEQDG--KTALIIALENGNVDIASILI 578
Query: 194 SREELGETIFWQVDNLGNSALHLAATYG 221
+ G I D+ G++ALH+A+ +G
Sbjct: 579 TN---GCDI-NHADHHGDTALHIASKHG 602
>sp|Q05823|RN5A_HUMAN 2-5A-dependent ribonuclease OS=Homo sapiens GN=RNASEL PE=1 SV=2
Length = 741
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 135 RSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRS 194
R R +TP+++A + +V+++L+ + I D D K LLLA+E + + LL
Sbjct: 235 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 294
Query: 195 R---EELGETIFWQVDNLGNSALHLAATYGDHRPWH 227
R + G+ + N +S + + ++G +H
Sbjct: 295 RGASTDCGDLVMTARRNYDHSLVKVLLSHGAKEDFH 330
>sp|Q47XJ9|MNMC_COLP3 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Colwellia psychrerythraea (strain 34H /
ATCC BAA-681) GN=mnmC PE=3 SV=1
Length = 682
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 42/83 (50%)
Query: 337 YQENDFVMALPRELLLGLTMLITSIVAILVSFCSGHSFLLTNEFRSAAYPIYAAAWLPVT 396
YQ++DFV ++ L L + + F +G +FLLT + A + + P+
Sbjct: 37 YQQSDFVFIQKNKIGLRLQIAKQTFTVAETGFGTGLNFLLTLQAYQKAQQVSSFQLAPLH 96
Query: 397 FFALAYLPLYVDRMVAILAMVPR 419
F ++ PL +++V L+++P+
Sbjct: 97 FISVEKYPLTKEQLVQSLSILPQ 119
>sp|Q9TXQ1|PME5_CAEEL Poly(ADP-ribose) polymerase pme-5 OS=Caenorhabditis elegans
GN=pme-5 PE=2 SV=1
Length = 2276
Score = 37.4 bits (85), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 141 TPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGE 200
TP+++A G EM KK+++ + + D ++ L+ A+ N Q H L ++ G
Sbjct: 501 TPLMMACGKGYLEMAKKLVEKGAL-VEGKDKKKRTPLIHAMLNGQIHTAAFLLAK---GA 556
Query: 201 TIFWQVDNLGNSALHLAATYG 221
++ D+ GN+A H AA YG
Sbjct: 557 SLTL-ADSSGNTAAHYAAAYG 576
>sp|Q7Z020|TRPA1_DROME Transient receptor potential cation channel subfamily A member 1
OS=Drosophila melanogaster GN=TrpA1 PE=2 SV=3
Length = 1296
Score = 35.4 bits (80), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 141 TPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGE 200
TP+ ++++ G T +V+ +L+ A+ D +N L LA + T LL S +
Sbjct: 614 TPLHISSQQGHTRVVQLLLNRG--ALLHRDHTGRNPLQLAAMSGYTETIELLHS---VHS 668
Query: 201 TIFWQVDNLGNSALHLAATYGDHRPWHTLGAALQMHWEISW 241
+ QVD GN+ALHLA +++P H + + M ++ +
Sbjct: 669 HLLDQVDKDGNTALHLATM--ENKP-HAISVLMSMGCKLVY 706
>sp|Q80VM7|ANR24_MOUSE Ankyrin repeat domain-containing protein 24 OS=Mus musculus
GN=Ankrd24 PE=2 SV=4
Length = 985
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 5/88 (5%)
Query: 135 RSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRS 194
R R TP+++AA+M T++ + +L A D D + L+LA E +L
Sbjct: 148 RDRSGATPLIIAAQMCHTDLCRLLLQQG-AATNDQDLQGRTALMLACEGGSPETVEVLLQ 206
Query: 195 REELGETIFWQVDNLGNSALHLAATYGD 222
G D LG A H A GD
Sbjct: 207 ----GGAQLSITDALGQDATHYGALTGD 230
>sp|Q18297|TRPA1_CAEEL Transient receptor potential cation channel subfamily A member 1
homolog OS=Caenorhabditis elegans GN=trpa-1 PE=2 SV=5
Length = 1211
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Query: 123 PDPNTYK--KKNARRS------RRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEK 174
P NT + ++ RR+ R + TP+ + A G EM++ +L +I ++ E+
Sbjct: 450 PTRNTLRIVSEDVRRTMVNMVDRDQNTPMHIVASNGYLEMMQ-LLQKHGASITQVNEDEE 508
Query: 175 NVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYG 221
L A QT +R E + D +GNSALHLAA G
Sbjct: 509 TALHRAAIGGQT---GAVRQLLEWDIRLLLMKDEMGNSALHLAARSG 552
>sp|O15084|ANR28_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat
subunit A OS=Homo sapiens GN=ANKRD28 PE=1 SV=5
Length = 1053
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 11/134 (8%)
Query: 132 NARRSRRKETPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNL 191
NA S+ + TP+ AA E ++ +L + + +D K L++A EN QT+ +
Sbjct: 817 NATDSKGR-TPLHAAAFTDHVECLQLLL-SHNAQVNSVDSTGKTPLMMAAENGQTNTVEM 874
Query: 192 LRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHTLGAALQMHWEISWFQFVKATTKQ 251
L S T+ DN N+ALHLA + G +AL + +I+ + AT
Sbjct: 875 LVSSASAELTL---QDNSKNTALHLACSKGHET------SALLILEKITDRNLINATNAA 925
Query: 252 AHRALVQEGREWLT 265
L R LT
Sbjct: 926 LQTPLHVAARNGLT 939
>sp|Q65QA6|RIMO_MANSM Ribosomal protein S12 methylthiotransferase RimO OS=Mannheimia
succiniciproducens (strain MBEL55E) GN=rimO PE=3 SV=1
Length = 448
Score = 33.1 bits (74), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 169 LDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHT 228
+D G K +L+++ + T Y L +S+E +T+FW + N+ + L G T
Sbjct: 184 VDSGVKELLVVS---QDTSAYALDQSKENQNKTVFWNGAPIKNNLITLCRQLG------T 234
Query: 229 LGAALQMHW 237
LGA +++H+
Sbjct: 235 LGAWIRLHY 243
>sp|P39629|RMLA_BACSU Glucose-1-phosphate thymidylyltransferase OS=Bacillus subtilis
(strain 168) GN=rmlA PE=1 SV=1
Length = 246
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 149 MGVTEMVKKIL---DTFPVAIWDL----DPGEKNVLLLAIENRQTHVYNLLRSREELGET 201
M +T+ V K L +P+ W + + G K++LL++ + Y LL + EELG T
Sbjct: 15 MPLTKAVNKHLLPVGPYPMIYWSIMKLQEAGIKDILLISQKEHMPQFYKLLGNGEELGVT 74
Query: 202 IFWQV 206
I +QV
Sbjct: 75 ITYQV 79
>sp|Q8TF21|ANR24_HUMAN Ankyrin repeat domain-containing protein 24 OS=Homo sapiens
GN=ANKRD24 PE=2 SV=2
Length = 1146
Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 141 TPILVAAKMGVTEMVKKILDTFPVAIWDLDPGEKNVLLLAIENRQTHVYNLLRSREELGE 200
TP+++AA+M T++ + +L A D D + L+LA E +L G
Sbjct: 183 TPLIIAAQMCHTDLCRLLLQQG-AAANDQDLQGRTALMLACEGASPETVEVLLQ----GG 237
Query: 201 TIFWQVDNLGNSALHLAATYGDHRPWHTLGAALQ 234
D LG A H A GD H L A Q
Sbjct: 238 AQPGITDALGQDAAHYGALAGDKLILHLLQEAAQ 271
>sp|Q9CKN9|RIMO_PASMU Ribosomal protein S12 methylthiotransferase RimO OS=Pasteurella
multocida (strain Pm70) GN=rimO PE=3 SV=1
Length = 446
Score = 32.3 bits (72), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 9/69 (13%)
Query: 169 LDPGEKNVLLLAIENRQTHVYNLLRSREELGETIFWQVDNLGNSALHLAATYGDHRPWHT 228
++ G K +L+++ + T Y L RS+EE +T+FW + N+ + L G
Sbjct: 180 VEAGVKEILVVS---QDTSAYALDRSKEEQNKTVFWNGMPIKNNLISLCEQLG------K 230
Query: 229 LGAALQMHW 237
LG +++H+
Sbjct: 231 LGVWVRLHY 239
>sp|P03189|V120_EBVB9 Protein BOLF1 OS=Epstein-Barr virus (strain B95-8) GN=BOLF1 PE=3 SV=1
Length = 1239
Score = 32.3 bits (72), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 262 EWLTKTSESCSVLAAFIATVAFATSAAVPGGVDQGSGKPILENKPVFNIFAISSLIAL 319
E +T T S SVLAAF T T VP D S P+ + P F I L A+
Sbjct: 1029 EQITVTPRSPSVLAAFARTARVQTHHLVPALTDD-SPSPVGQTPPPFRILPAKKLAAI 1085
>sp|Q1HVH8|V120_EBVA8 Protein BOLF1 OS=Epstein-Barr virus (strain AG876) GN=BOLF1 PE=3 SV=1
Length = 1240
Score = 32.3 bits (72), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 262 EWLTKTSESCSVLAAFIATVAFATSAAVPGGVDQGSGKPILENKPVFNIFAISSLIAL 319
E +T T S SVLAAF T T VP D S P+ + P F I L A+
Sbjct: 1030 EQITVTPRSPSVLAAFARTARVQTHHLVPALTDD-SPSPVGQTPPPFRILPAKKLAAI 1086
>sp|Q921R4|DJC14_MOUSE DnaJ homolog subfamily C member 14 OS=Mus musculus GN=Dnajc14 PE=2
SV=2
Length = 703
Score = 32.3 bits (72), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 204 WQVDNLGNSALHLAATY-GDHRPWHTLGAALQMHW-EISWFQFVKATTKQAHRALVQEGR 261
W LG+ ALH T D RPW L +Q W E+ W VK TK+ A V GR
Sbjct: 365 WLFSWLGSPALHHCLTLLKDSRPWQQLVRLIQWGWQELPW---VKQRTKKQGNAPVASGR 421
>sp|Q3KSU7|V120_EBVG Protein BOLF1 OS=Epstein-Barr virus (strain GD1) GN=BOLF1 PE=3 SV=1
Length = 1239
Score = 32.0 bits (71), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 262 EWLTKTSESCSVLAAFIATVAFATSAAVPGGVDQGSGKPILENKPVFNIFAISSLIAL 319
E +T T S SVLAAF T T VP D S P+ + P F I L A+
Sbjct: 1026 EQITVTPRSPSVLAAFARTARVQTHHLVPALTDD-SPSPVGQTPPPFRILPAKKLAAI 1082
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 156,411,142
Number of Sequences: 539616
Number of extensions: 6407238
Number of successful extensions: 17189
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 17170
Number of HSP's gapped (non-prelim): 44
length of query: 429
length of database: 191,569,459
effective HSP length: 120
effective length of query: 309
effective length of database: 126,815,539
effective search space: 39186001551
effective search space used: 39186001551
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)