BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042592
(310 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BCC|D Chain D, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|D Chain D, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|D Chain D, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 241
Score = 301 bits (772), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 147/231 (63%), Positives = 179/231 (77%)
Query: 74 LACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAM 133
L PSYPW H+G LSS DH SIRRG QVY+QVC+SCHSM ++YR LVGV YTEDE KA+
Sbjct: 5 LHPPSYPWSHRGPLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEDEAKAL 64
Query: 134 AAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQ 193
A E+EV DGPN++GEMF RPGKLSD FP+PY N +AAR AN GA PPDLS I +ARH G+
Sbjct: 65 AEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARHGGE 124
Query: 194 NYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGK 253
+YVF+LLTGY +PP GVS+REGL++NPYFPG AI M + + LE++DGTPAT +Q+ K
Sbjct: 125 DYVFSLLTGYCEPPTGVSVREGLYFNPYFPGQAIGMAPPIYNDVLEFDDGTPATMSQVAK 184
Query: 254 DVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKL 304
DV TFL WAAEPE + RK MG K + ++ L + Y +R +WSVLKSRKL
Sbjct: 185 DVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLVPLVYYMKRHKWSVLKSRKL 235
>pdb|1BGY|D Chain D, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|P Chain P, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|D Chain D, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|D Chain D, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|D Chain D, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|D Chain D, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|D Chain D, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|D Chain D, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|D Chain D, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|D Chain D, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|Q Chain Q, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|D Chain D, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|Q Chain Q, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1SQB|D Chain D, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|2A06|D Chain D, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|Q Chain Q, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|D Chain D, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|D Chain D, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQP|D Chain D, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
pdb|1SQQ|D Chain D, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|D Chain D, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|D Chain D, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|DD Chain d, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 241
Score = 299 bits (766), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 147/231 (63%), Positives = 179/231 (77%)
Query: 74 LACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAM 133
L PSYPW H+G+LSS DH SIRRG QVY+QVC+SCHSM ++YR LVGV YTEDE KA+
Sbjct: 5 LHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEDEAKAL 64
Query: 134 AAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQ 193
A E+EV DGPN++GEMF RPGKLSD FP+PY N +AAR AN GA PPDLS I +ARH G+
Sbjct: 65 AEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARHGGE 124
Query: 194 NYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGK 253
+YVF+LLTGY +PP GVS+REGL++NPYFPG AI M + + LE++DGTPAT +Q+ K
Sbjct: 125 DYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIYNEVLEFDDGTPATMSQVAK 184
Query: 254 DVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKL 304
DV TFL WAAEPE + RK MG K + ++ L L +R +WSVLKSRKL
Sbjct: 185 DVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVYAMKRHKWSVLKSRKL 235
>pdb|1EZV|D Chain D, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
Length = 245
Score = 292 bits (747), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 135/239 (56%), Positives = 178/239 (74%), Gaps = 1/239 (0%)
Query: 70 AEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDE 129
AEHGL P+Y W H G ++DHASIRRG+QVY++VCA+CHS+ +++R LVGV++T +E
Sbjct: 4 AEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHTNEE 63
Query: 130 TKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKAR 189
+ MA E E D P+++G RPGKLSD P PY NEQAAR AN GA PPDLSLI KAR
Sbjct: 64 VRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIVKAR 123
Query: 190 HDGQNYVFALLTGYRD-PPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATE 248
H G +Y+F+LLTGY D PPAGV++ G +YNPYFPGG+IAM ++L D +EYEDGTPAT
Sbjct: 124 HGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTPATT 183
Query: 249 AQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLD 307
+QM KDV TFL+W AEPE +ERK +G K + +LS L + + ++ +W+ +K+RK V +
Sbjct: 184 SQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFVFN 242
>pdb|1KYO|D Chain D, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|O Chain O, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|2IBZ|D Chain D, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|D Chain D, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|O Chain O, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|D Chain D, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|O Chain O, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 248
Score = 292 bits (747), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 135/239 (56%), Positives = 178/239 (74%), Gaps = 1/239 (0%)
Query: 70 AEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDE 129
AEHGL P+Y W H G ++DHASIRRG+QVY++VCA+CHS+ +++R LVGV++T +E
Sbjct: 4 AEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHTNEE 63
Query: 130 TKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKAR 189
+ MA E E D P+++G RPGKLSD P PY NEQAAR AN GA PPDLSLI KAR
Sbjct: 64 VRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIVKAR 123
Query: 190 HDGQNYVFALLTGYRD-PPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATE 248
H G +Y+F+LLTGY D PPAGV++ G +YNPYFPGG+IAM ++L D +EYEDGTPAT
Sbjct: 124 HGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTPATT 183
Query: 249 AQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLD 307
+QM KDV TFL+W AEPE +ERK +G K + +LS L + + ++ +W+ +K+RK V +
Sbjct: 184 SQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFVFN 242
>pdb|1KB9|D Chain D, Yeast Cytochrome Bc1 Complex
pdb|1P84|D Chain D, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
Length = 246
Score = 291 bits (746), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 135/239 (56%), Positives = 178/239 (74%), Gaps = 1/239 (0%)
Query: 70 AEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDE 129
AEHGL P+Y W H G ++DHASIRRG+QVY++VCA+CHS+ +++R LVGV++T +E
Sbjct: 4 AEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHTNEE 63
Query: 130 TKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKAR 189
+ MA E E D P+++G RPGKLSD P PY NEQAAR AN GA PPDLSLI KAR
Sbjct: 64 VRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIVKAR 123
Query: 190 HDGQNYVFALLTGYRD-PPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATE 248
H G +Y+F+LLTGY D PPAGV++ G +YNPYFPGG+IAM ++L D +EYEDGTPAT
Sbjct: 124 HGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTPATT 183
Query: 249 AQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLD 307
+QM KDV TFL+W AEPE +ERK +G K + +LS L + + ++ +W+ +K+RK V +
Sbjct: 184 SQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFVFN 242
>pdb|3CWB|D Chain D, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|Q Chain Q, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|D Chain D, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|Q Chain Q, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|D Chain D, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|Q Chain Q, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|D Chain D, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|Q Chain Q, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|D Chain D, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|Q Chain Q, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|D Chain D, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|Q Chain Q, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|D Chain D, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|Q Chain Q, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|D Chain D, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|Q Chain Q, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|D Chain D, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|Q Chain Q, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|D Chain D, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|Q Chain Q, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|D Chain D, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|Q Chain Q, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|D Chain D, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|Q Chain Q, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|D Chain D, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|Q Chain Q, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 241
Score = 284 bits (727), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 138/231 (59%), Positives = 177/231 (76%)
Query: 74 LACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAM 133
L P++PW H G LS+ DH+S+RRG QVY+QVC++CHSM +++R+L+GV +TE E KA+
Sbjct: 5 LHPPAFPWSHGGPLSALDHSSVRRGFQVYKQVCSACHSMDYVAFRNLIGVTHTEAEAKAL 64
Query: 134 AAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQ 193
A E+EV DGP++ GE+F RPGK+SD FP+PY N +AAR AN GA PPDLS I ARH G+
Sbjct: 65 AEEVEVQDGPDENGELFMRPGKISDYFPKPYPNPEAARAANNGALPPDLSYIVNARHGGE 124
Query: 194 NYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGK 253
+YVF+LLTGY DPPAGV +REGLHYNPYFPG AI M + + LEY+DGTPAT +Q+ K
Sbjct: 125 DYVFSLLTGYCDPPAGVVVREGLHYNPYFPGQAIGMAPPIYNEILEYDDGTPATMSQIAK 184
Query: 254 DVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKL 304
DV TFL WAAEPE ++RK MG K + + +L Y +R +WSVLKSRK+
Sbjct: 185 DVCTFLRWAAEPEHDQRKRMGLKMLLISALLTSLLYYMKRHKWSVLKSRKM 235
>pdb|2YIU|B Chain B, X-Ray Structure Of The Dimeric Cytochrome Bc1 Complex From
The Soil Bacterium Paracoccus Denitrificans At 2.7
Angstrom Resolution
pdb|2YIU|E Chain E, X-Ray Structure Of The Dimeric Cytochrome Bc1 Complex From
The Soil Bacterium Paracoccus Denitrificans At 2.7
Angstrom Resolution
Length = 263
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 113/244 (46%), Gaps = 42/244 (17%)
Query: 84 KGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLV---GVAYTEDETKAMAAEIEVV 140
+G +D ++RG QVY +VC++CH + + R L G ED+ +A AA ++
Sbjct: 36 EGPFGKFDQHQLQRGLQVYTEVCSACHGLRYVPLRTLADEGGPQLPEDQVRAYAANFDIT 95
Query: 141 DGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHD--------- 191
D +E RP +D FP +G PDLSL+ KAR
Sbjct: 96 DPETEE----DRPRVPTDHFPT----------VSGEGMGPDLSLMAKARAGFHGPYGTGL 141
Query: 192 --------GQNYVFALLTGYRDPPAGVSIREG---LHYNPYFPGGAIAMPKMLIDGALEY 240
G Y+ A+LTGY G E L++N F G I M L D + Y
Sbjct: 142 SQLFNGIGGPEYIHAVLTGYD----GEEKEEAGAVLYHNAAFAGNWIQMAAPLSDDQVTY 197
Query: 241 EDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGF-KWIFVLSLALLQAGYYRRLRWSVL 299
EDGTPAT QM DV FL W AEP+M +RK +GF IF++ LA L ++L +
Sbjct: 198 EDGTPATVDQMATDVAAFLMWTAEPKMMDRKQVGFVSVIFLIVLAALLYLTNKKLWQPIK 257
Query: 300 KSRK 303
RK
Sbjct: 258 HPRK 261
>pdb|2FYN|B Chain B, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|E Chain E, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|H Chain H, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|K Chain K, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|N Chain N, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|Q Chain Q, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2QJY|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|E Chain E, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|H Chain H, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|K Chain K, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|N Chain N, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|Q Chain Q, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
Length = 269
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 124/266 (46%), Gaps = 58/266 (21%)
Query: 80 PWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLV---GVAYTEDETKAMAAE 136
P+ +G ++D ++RG QVY +VCA+CH M + R L G ED+ +A A +
Sbjct: 10 PFSFEGPFGTFDQHQLQRGLQVYTEVCAACHGMKFVPIRSLSEPGGPELPEDQVRAYATQ 69
Query: 137 IEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHD----- 191
V D + GE R GK +D FP + N PDLSL+ KAR
Sbjct: 70 FTVTD--EETGE--DREGKPTDHFPH-------SALENA----PDLSLMAKARAGFHGPM 114
Query: 192 ------------GQNYVFALLTGY-RDPPAGVSIRE--GLHYNPYFPGGA---------- 226
G Y++++LTG+ +PP E G +YN F G+
Sbjct: 115 GTGISQLFNGIGGPEYIYSVLTGFPEEPPKCAEGHEPDGFYYNRAFQNGSVPDTCKDANG 174
Query: 227 --------IAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWI 278
IAMP L+D +EY DG A+ M +DV FL WAAEP++ RK GF +
Sbjct: 175 VKTTAGSWIAMPPPLMDDLVEYADGHDASVHAMAEDVSAFLMWAAEPKLMARKQAGFTAV 234
Query: 279 FVLS-LALLQAGYYRRLRWSVLKSRK 303
L+ L++L +RL W+ +K +K
Sbjct: 235 MFLTVLSVLLYLTNKRL-WAGVKGKK 259
>pdb|2QJK|B Chain B, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|E Chain E, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|H Chain H, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|K Chain K, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|N Chain N, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|Q Chain Q, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJP|B Chain B, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|E Chain E, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|H Chain H, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|K Chain K, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
Length = 256
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 122/263 (46%), Gaps = 58/263 (22%)
Query: 80 PWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLV---GVAYTEDETKAMAAE 136
P+ +G ++D ++RG QVY +VCA+CH M + R L G ED+ +A A +
Sbjct: 10 PFSFEGPFGTFDQHQLQRGLQVYTEVCAACHGMKFVPIRSLSEPGGPELPEDQVRAYATQ 69
Query: 137 IEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHD----- 191
V D + GE R GK +D FP + N PDLSL+ KAR
Sbjct: 70 FTVTD--EETGE--DREGKPTDHFPH-------SALENA----PDLSLMAKARAGFHGPM 114
Query: 192 ------------GQNYVFALLTGY-RDPPAGVSIRE--GLHYNPYFPGGA---------- 226
G Y++++LTG+ +PP E G +YN F G+
Sbjct: 115 GTGISQLFNGIGGPEYIYSVLTGFPEEPPKCAEGHEPDGFYYNRAFQNGSVPDTCKDANG 174
Query: 227 --------IAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWI 278
IAMP L+D +EY DG A+ M +DV FL WAAEP++ RK GF +
Sbjct: 175 VKTTAGSWIAMPPPLMDDLVEYADGHDASVHAMAEDVSAFLMWAAEPKLMARKQAGFTAV 234
Query: 279 FVLS-LALLQAGYYRRLRWSVLK 300
L+ L++L +RL W+ +K
Sbjct: 235 MFLTVLSVLLYLTNKRL-WAGVK 256
>pdb|1ZRT|D Chain D, Rhodobacter Capsulatus Cytochrome Bc1 Complex With
Stigmatellin Bound
pdb|1ZRT|Q Chain Q, Rhodobacter Capsulatus Cytochrome Bc1 Complex With
Stigmatellin Bound
Length = 258
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 116/267 (43%), Gaps = 54/267 (20%)
Query: 77 PSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLV---GVAYTEDETKAM 133
P + + +GI YD A +RRG QVY +VC++CH M + R L G +
Sbjct: 5 PDHAFSFEGIFGKYDQAQLRRGFQVYNEVCSACHGMKFVPIRTLADDGGPQLDPTFVREY 64
Query: 134 AAEIE-VVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKAR--- 189
AA ++ ++D D GE R K +D FP R +G PDLS++ KAR
Sbjct: 65 AAGLDTIID--KDSGE--ERDRKETDMFP--------TRVGDGMG--PDLSVMAKARAGF 110
Query: 190 --------------HDGQNYVFALLTGYR-DPPAGVSIREGLHYNPYFPGGAIA------ 228
G Y++ + G+ +P +G +YN F G +
Sbjct: 111 SGPAGSGMNQLFKGMGGPEYIYNYVIGFEENPECAPEGIDGYYYNKTFQIGGVPDTCKDA 170
Query: 229 ------------MPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFK 276
MP L+D + YEDGTPAT QM +DV FL WAAEP++ RK MG
Sbjct: 171 AGVKITHGSWARMPPPLVDDQVTYEDGTPATVDQMAQDVSAFLMWAAEPKLVARKQMGLV 230
Query: 277 WIFVLSLALLQAGYYRRLRWSVLKSRK 303
+ +L L + + W+ K K
Sbjct: 231 AMVMLGLLSVMLYLTNKRLWAPYKGHK 257
>pdb|1QCR|D Chain D, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 75
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 48/67 (71%)
Query: 238 LEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWS 297
LE++DGTPAT +Q+ KDV TFL WAAEPE + RK MG K + ++ L L +R +WS
Sbjct: 3 LEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVYAMKRHKWS 62
Query: 298 VLKSRKL 304
VLKSRKL
Sbjct: 63 VLKSRKL 69
>pdb|2YEV|B Chain B, Structure Of Caa3-Type Cytochrome Oxidase
pdb|2YEV|E Chain E, Structure Of Caa3-Type Cytochrome Oxidase
Length = 337
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 96 RRGHQVYQQVCASCHSMS 113
RG QV+QQ CA+CH ++
Sbjct: 237 ERGQQVFQQNCAACHGVA 254
>pdb|1F1C|A Chain A, Crystal Structure Of Cytochrome C549
pdb|1F1C|B Chain B, Crystal Structure Of Cytochrome C549
Length = 129
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 78 SYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSL 114
++P +G + I++G QV+ CA CH++ +
Sbjct: 7 TFPINAQGDTAVLSLKEIKKGQQVFNAACAQCHALGV 43
>pdb|1KV9|A Chain A, Structure At 1.9 A Resolution Of A Quinohemoprotein
Alcohol Dehydrogenase From Pseudomonas Putida Hk5
Length = 668
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 95 IRRGHQVYQQVCASCHSMSLIS 116
++ G Q+Y Q C+ CH M IS
Sbjct: 580 VQAGKQLYGQFCSVCHGMGTIS 601
>pdb|1BOO|A Chain A, Pvuii Dna Methyltransferase (Cytosine-N4-Specific)
Length = 323
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 115 ISYRDLVGVAYTEDETKAMAAEIEVVDGPNDE--GEMFTRPGKLSDRFPQPYSNEQAARF 172
I +D V + +T+ ++I V P + ++ P K +P ++ F
Sbjct: 138 IRVKDAVNTVWWFSKTEWPKSDITKVLAPYSDRMKKLIEDPDKFYTPKTRPSGHDIGKSF 197
Query: 173 A--NGGAYPPDLSLITKARHDGQNYVFALLTGYRDPPA 208
+ NGG+ PP+L I+ + +GQ L G + PA
Sbjct: 198 SKDNGGSIPPNLLQISNSESNGQYLANCKLMGIKAHPA 235
>pdb|1YIQ|A Chain A, Molecular Cloning And Structural Analysis Of
Quinohemoprotein Alcohol Dehydrogenase Adhiig From
Pseudomonas Putida Hk5. Compariison To The Other
Quinohemoprotein Alcohol Dehydrogenase Adhiib Found In
The Same Microorganism
Length = 689
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Query: 37 AGSVGMKSLRAFAL-LGAGVSGFLSFATIASADEAEHGLACPSYPWPHKGILSSYDHASI 95
AG G S A AL L AGV + T A+ P P LS+ D ASI
Sbjct: 537 AGWGGAFSTFAGALSLRAGVQPYAQVLTYKLGGTAKLQEPAPRPDTPKPPALSN-DTASI 595
Query: 96 RRGHQVYQQVCASCHSMSLIS 116
G ++Y C+ CH + +S
Sbjct: 596 EAGAKLYDGYCSQCHGIHAVS 616
>pdb|3TJL|A Chain A, Crystal Structure Of A Novel Oye From The
Xylose-Fermenting Fungus P. Stipitis
pdb|3UPW|A Chain A, Pichia Stipitis Oye2.6 Complexed With Nicotinamide
Length = 407
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 103 QQVCASCHSMSLISYRDLVGVAYTEDETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQ 162
+ V +++ +DLV AYT KAM A + + E+ G L D+F Q
Sbjct: 148 EAVGNPVRALTTQEVKDLVYEAYTNAAQKAMDAGFDYI-------ELHAAHGYLLDQFLQ 200
Query: 163 PYSNEQAARF 172
P +N++ +
Sbjct: 201 PCTNQRTDEY 210
>pdb|3DTZ|A Chain A, Crystal Structure Of Putative Chlorite Dismutase Ta0507
pdb|3DTZ|B Chain B, Crystal Structure Of Putative Chlorite Dismutase Ta0507
pdb|3DTZ|C Chain C, Crystal Structure Of Putative Chlorite Dismutase Ta0507
pdb|3DTZ|D Chain D, Crystal Structure Of Putative Chlorite Dismutase Ta0507
pdb|3DTZ|E Chain E, Crystal Structure Of Putative Chlorite Dismutase Ta0507
Length = 244
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 113 SLISYRDLVGVAYTEDETKAMAAEIEVVDGPNDEGEMFT-RPGKLSDRFPQPYSNEQAAR 171
S++SYR L G AY++ +T+++ +D E F+ PG ++ + Y +
Sbjct: 27 SVLSYRLLEGKAYSDADTRSLDRXXRSID------EFFSANPGYINFHIYRSYRTDSDVI 80
Query: 172 FANGGAYPPDLSLITKAR 189
F PDL ++ K R
Sbjct: 81 FWYSSR-NPDLXILAKER 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,895,380
Number of Sequences: 62578
Number of extensions: 421051
Number of successful extensions: 700
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 674
Number of HSP's gapped (non-prelim): 20
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)