BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042592
(310 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P25076|CY11_SOLTU Cytochrome c1-1, heme protein, mitochondrial OS=Solanum tuberosum
GN=CYCL PE=2 SV=1
Length = 320
Score = 529 bits (1362), Expect = e-149, Method: Compositional matrix adjust.
Identities = 251/273 (91%), Positives = 260/273 (95%)
Query: 38 GSVGMKSLRAFALLGAGVSGFLSFATIASADEAEHGLACPSYPWPHKGILSSYDHASIRR 97
GS G KS RA A +GAGVSG LSFATIA +DEAEHGL CP+YPWPH+GILSSYDHASIRR
Sbjct: 48 GSAGSKSFRALAAIGAGVSGLLSFATIAYSDEAEHGLECPNYPWPHEGILSSYDHASIRR 107
Query: 98 GHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAMAAEIEVVDGPNDEGEMFTRPGKLS 157
GHQVYQQVCASCHSMSLISYRDLVGVAYTE+ETKAMAAEIEVVDGPNDEGEMFTRPGKLS
Sbjct: 108 GHQVYQQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLS 167
Query: 158 DRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAGVSIREGLH 217
DRFPQPY+NE AARFANGGAYPPDLSLITKARH+GQNYVFALLT YRDPPAGVSIREGLH
Sbjct: 168 DRFPQPYANEAAARFANGGAYPPDLSLITKARHNGQNYVFALLTAYRDPPAGVSIREGLH 227
Query: 218 YNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKW 277
YNPYFPGGAIAMPKML DGA+EYEDG PATEAQMGKDVV+FLSWAAEPEMEERKLMGFKW
Sbjct: 228 YNPYFPGGAIAMPKMLNDGAVEYEDGIPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKW 287
Query: 278 IFVLSLALLQAGYYRRLRWSVLKSRKLVLDVVN 310
IFVLSLALLQA YYRRLRWSVLKSRKLVLDVVN
Sbjct: 288 IFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 320
>sp|P29610|CY12_SOLTU Cytochrome c1-2, heme protein, mitochondrial (Fragment) OS=Solanum
tuberosum GN=CYCL PE=1 SV=1
Length = 260
Score = 508 bits (1309), Expect = e-143, Method: Compositional matrix adjust.
Identities = 240/260 (92%), Positives = 248/260 (95%)
Query: 51 LGAGVSGFLSFATIASADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCH 110
+GAGVSG L FAT+ASADEAEHGL CPSYPWPH GILSSYDHASIRRGHQVYQQVCASCH
Sbjct: 1 IGAGVSGLLGFATVASADEAEHGLECPSYPWPHAGILSSYDHASIRRGHQVYQQVCASCH 60
Query: 111 SMSLISYRDLVGVAYTEDETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAA 170
SMSL+SYRDLVGVAYTE+E KAMAAEIEV DGPNDEGEMFTRPGKLSDRFPQPY NE AA
Sbjct: 61 SMSLVSYRDLVGVAYTEEEVKAMAAEIEVEDGPNDEGEMFTRPGKLSDRFPQPYPNEAAA 120
Query: 171 RFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMP 230
RFANGGAYPPDLSLITKARH+GQNYVFALLT YRDPPAGVSIREGLHYNPYFPGGAIAMP
Sbjct: 121 RFANGGAYPPDLSLITKARHNGQNYVFALLTAYRDPPAGVSIREGLHYNPYFPGGAIAMP 180
Query: 231 KMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGY 290
KML DGA+EYEDG PATEAQMGKDVV+FL+WAAEPEMEERKLMGFKWIFVLSLALLQA Y
Sbjct: 181 KMLNDGAVEYEDGVPATEAQMGKDVVSFLTWAAEPEMEERKLMGFKWIFVLSLALLQAAY 240
Query: 291 YRRLRWSVLKSRKLVLDVVN 310
YRRLRWSVLKSRKLVLDVVN
Sbjct: 241 YRRLRWSVLKSRKLVLDVVN 260
>sp|P08574|CY1_HUMAN Cytochrome c1, heme protein, mitochondrial OS=Homo sapiens GN=CYC1
PE=1 SV=3
Length = 325
Score = 301 bits (771), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 145/228 (63%), Positives = 178/228 (78%)
Query: 77 PSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAMAAE 136
PSYPW H+G+LSS DH SIRRG QVY+QVCASCHSM ++YR LVGV YTEDE K +AAE
Sbjct: 92 PSYPWSHRGLLSSLDHTSIRRGFQVYKQVCASCHSMDFVAYRHLVGVCYTEDEAKELAAE 151
Query: 137 IEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYV 196
+EV DGPN++GEMF RPGKL D FP+PY N +AAR AN GA PPDLS I +ARH G++YV
Sbjct: 152 VEVQDGPNEDGEMFMRPGKLFDYFPKPYPNSEAARAANNGALPPDLSYIVRARHGGEDYV 211
Query: 197 FALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVV 256
F+LLTGY +PP GVS+REGL++NPYFPG AIAM + LE++DGTPAT +Q+ KDV
Sbjct: 212 FSLLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPPIYTDVLEFDDGTPATMSQIAKDVC 271
Query: 257 TFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKL 304
TFL WA+EPE + RK MG K + +++L + +R +WSVLKSRKL
Sbjct: 272 TFLRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKL 319
>sp|P00125|CY1_BOVIN Cytochrome c1, heme protein, mitochondrial OS=Bos taurus GN=CYC1
PE=1 SV=2
Length = 325
Score = 300 bits (769), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 146/228 (64%), Positives = 178/228 (78%)
Query: 77 PSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAMAAE 136
PSYPW H+G+LSS DH SIRRG QVY+QVC+SCHSM ++YR LVGV YTEDE KA+A E
Sbjct: 92 PSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEDEAKALAEE 151
Query: 137 IEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYV 196
+EV DGPN++GEMF RPGKLSD FP+PY N +AAR AN GA PPDLS I +ARH G++YV
Sbjct: 152 VEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARHGGEDYV 211
Query: 197 FALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVV 256
F+LLTGY +PP GVS+REGL++NPYFPG AI M + + LE++DGTPAT +Q+ KDV
Sbjct: 212 FSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIYNEVLEFDDGTPATMSQVAKDVC 271
Query: 257 TFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKL 304
TFL WAAEPE + RK MG K + ++ L L +R +WSVLKSRKL
Sbjct: 272 TFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVYAMKRHKWSVLKSRKL 319
>sp|P07142|CY1_NEUCR Cytochrome c1, heme protein, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=cyt-1 PE=2 SV=1
Length = 332
Score = 295 bits (756), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 140/239 (58%), Positives = 176/239 (73%), Gaps = 1/239 (0%)
Query: 70 AEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDE 129
AE GL YPW H+ L ++DH ++RRG QVY++VCASCHS+S + YR LVG T DE
Sbjct: 74 AEEGLHATKYPWVHEQWLKTFDHQALRRGFQVYREVCASCHSLSRVPYRALVGTILTVDE 133
Query: 130 TKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKAR 189
KA+A E E PND+GE+ RPGKLSD P PY N++AARFAN GA PPDLSLI KAR
Sbjct: 134 AKALAEENEYDTEPNDQGEIEKRPGKLSDYLPDPYKNDEAARFANNGALPPDLSLIVKAR 193
Query: 190 HDGQNYVFALLTGYRD-PPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATE 248
H G +Y+F+LLTGY D PPAG S+ GL++NPYFPG IAM ++L DG ++YEDGTPA+
Sbjct: 194 HGGCDYIFSLLTGYPDEPPAGASVGAGLNFNPYFPGTGIAMARVLYDGLVDYEDGTPAST 253
Query: 249 AQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLD 307
+QM KDVV FL+WAAEPEM++RK MG K + V S+ + Y +R +W+ LKSRK+V D
Sbjct: 254 SQMAKDVVEFLNWAAEPEMDDRKRMGMKVLVVTSVLFALSVYVKRYKWAWLKSRKIVYD 312
>sp|Q00988|CY1_KLULA Cytochrome c1, heme protein, mitochondrial OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=CYT1 PE=3 SV=1
Length = 292
Score = 295 bits (756), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 149/286 (52%), Positives = 196/286 (68%), Gaps = 5/286 (1%)
Query: 26 SFFTSKKIHEDAGSVGMKSLRAFALLGAGVSGFLSFATIASADE---AEHGLACPSYPWP 82
SF T+ K V + A++G G S L +A +AD AEHGL P Y W
Sbjct: 4 SFSTAAKQAVKGTYVQRAIVGGAAVVGIGASTML-YADSLTADAMTAAEHGLHAPGYGWS 62
Query: 83 HKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAMAAEIEVVDG 142
H G L ++DH+SIRRG+QVY++VCA+CHS+ +++R +VGV++T E +AMA E E D
Sbjct: 63 HNGPLETFDHSSIRRGYQVYREVCAACHSLDRVAWRTMVGVSHTNAEVRAMAEEFEYDDE 122
Query: 143 PNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTG 202
P+D+G RPGKL+D P PY NEQAAR AN GA PPDLSLI KARH G +Y+FALLTG
Sbjct: 123 PDDQGNPKKRPGKLADYVPGPYPNEQAARAANQGALPPDLSLIVKARHGGPDYIFALLTG 182
Query: 203 Y-RDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSW 261
Y +PPAGV + G +YNPYFPGG+IAM ++L D +EYEDGTPAT +QM KDV TFL W
Sbjct: 183 YPEEPPAGVVLPPGANYNPYFPGGSIAMGRVLFDDLVEYEDGTPATTSQMAKDVTTFLHW 242
Query: 262 AAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLD 307
+EPE +ERK +G K + VLS L + + ++ +W+ +KSRK+V +
Sbjct: 243 CSEPEHDERKRLGLKAMIVLSSLYLLSVWVKKFKWASIKSRKIVFN 288
>sp|P07143|CY1_YEAST Cytochrome c1, heme protein, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CYT1 PE=1
SV=1
Length = 309
Score = 295 bits (755), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 147/289 (50%), Positives = 198/289 (68%), Gaps = 11/289 (3%)
Query: 30 SKKIHEDAGSVGMKSLR-AFALLGAGVSGF-LSFATIASADE--------AEHGLACPSY 79
SK + A KS + L+ AGV+ ++ +T+ AD AEHGL P+Y
Sbjct: 15 SKSFYSTATGAASKSGKLTQKLVTAGVAAAGITASTLLYADSLTAEAMTAAEHGLHAPAY 74
Query: 80 PWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAMAAEIEV 139
W H G ++DHASIRRG+QVY++VCA+CHS+ +++R LVGV++T +E + MA E E
Sbjct: 75 AWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHTNEEVRNMAEEFEY 134
Query: 140 VDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFAL 199
D P+++G RPGKLSD P PY NEQAAR AN GA PPDLSLI KARH G +Y+F+L
Sbjct: 135 DDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIVKARHGGCDYIFSL 194
Query: 200 LTGYRD-PPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTF 258
LTGY D PPAGV++ G +YNPYFPGG+IAM ++L D +EYEDGTPAT +QM KDV TF
Sbjct: 195 LTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTPATTSQMAKDVTTF 254
Query: 259 LSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLD 307
L+W AEPE +ERK +G K + +LS L + + ++ +W+ +K+RK V +
Sbjct: 255 LNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFVFN 303
>sp|O59680|CY1_SCHPO Cytochrome c1, heme protein, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cyt1 PE=3 SV=1
Length = 307
Score = 293 bits (751), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 129/242 (53%), Positives = 181/242 (74%)
Query: 63 TIASADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVG 122
++++ E GL + WP +LS +DHAS+RRG QVY++VC++CHS++LI++R LVG
Sbjct: 59 SLSAGTPKEEGLHFIQHDWPQSKVLSGFDHASLRRGFQVYREVCSACHSLNLIAWRHLVG 118
Query: 123 VAYTEDETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDL 182
V +T DE K MA+E+E DGP+DEG MF RPGKLSD P PY N +AAR +N GA PPDL
Sbjct: 119 VTHTADEAKQMASEVEYEDGPDDEGNMFKRPGKLSDFLPPPYPNVEAARASNNGAAPPDL 178
Query: 183 SLITKARHDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYED 242
S + + RH GQ+Y+++LLTGY +PPAGV + +G+++NP+FPG IAM + L D A+E+ED
Sbjct: 179 SCVVRGRHGGQDYIYSLLTGYTEPPAGVEVPDGMNFNPFFPGTQIAMARPLFDDAVEFED 238
Query: 243 GTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSR 302
GTPAT AQ KDVV FL WA+EPE++ RK MGF+ I VL++ + +Y+R +W+ +K+R
Sbjct: 239 GTPATTAQAAKDVVNFLHWASEPELDIRKKMGFQVITVLTILTALSMWYKRFKWTPIKNR 298
Query: 303 KL 304
K+
Sbjct: 299 KI 300
>sp|Q54D07|CY1_DICDI Cytochrome c1, heme protein, mitochondrial OS=Dictyostelium
discoideum GN=cyc1 PE=3 SV=1
Length = 275
Score = 285 bits (728), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 131/227 (57%), Positives = 171/227 (75%)
Query: 78 SYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAMAAEI 137
SYPW H+ SYDHA+IRRGHQVY QVC++CHS++LISYR L VAYT +E KAMAA+
Sbjct: 45 SYPWEHRFPWQSYDHAAIRRGHQVYTQVCSTCHSLNLISYRHLANVAYTPEELKAMAADT 104
Query: 138 EVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVF 197
V+DGP+ EG+MF R G+++D P+PY N AARFAN GA PPDLSL+ KAR ++YVF
Sbjct: 105 TVMDGPDSEGDMFERKGQVTDFHPKPYPNSNAARFANNGALPPDLSLVIKARGAHEDYVF 164
Query: 198 ALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVT 257
+LLTGY +PPAGV + G ++NPYFPG IAM L DG +EY+DGT + +QM KDV T
Sbjct: 165 SLLTGYCEPPAGVRVVGGQYFNPYFPGTKIAMAPPLADGMVEYDDGTDNSMSQMAKDVST 224
Query: 258 FLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKL 304
FL WA+EPE ++RK +G K + +S+ L Y++RL+WSV+K+RK+
Sbjct: 225 FLCWASEPEHDDRKKLGMKVLLGVSIIALPLFYWKRLKWSVIKTRKI 271
>sp|Q9D0M3|CY1_MOUSE Cytochrome c1, heme protein, mitochondrial OS=Mus musculus GN=Cyc1
PE=1 SV=1
Length = 325
Score = 281 bits (720), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 147/232 (63%), Positives = 178/232 (76%)
Query: 74 LACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAM 133
L PSYPW H+G+LSS DH SIRRG QVY+QVC+SCHSM ++YR LVGV YTE+E KA+
Sbjct: 89 LHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEEEAKAL 148
Query: 134 AAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQ 193
A E+EV DGPND+GEMF RPGKLSD FP+PY N +AAR AN GA PPDLS I +ARH G+
Sbjct: 149 AEEVEVQDGPNDDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARHGGE 208
Query: 194 NYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGK 253
+YVF+LLTGY +PP GVS+REGL++NPYFPG AI M + LEY+DGTPAT +Q+ K
Sbjct: 209 DYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIYTEVLEYDDGTPATMSQVAK 268
Query: 254 DVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLV 305
DV TFL WA+EPE + RK MG K + ++ L L +R +WSVLKSRKL
Sbjct: 269 DVATFLRWASEPEHDHRKRMGLKMLLMMGLLLPLTYAMKRHKWSVLKSRKLA 320
>sp|P20114|CY1_EUGGR Cytochrome c1, heme protein OS=Euglena gracilis PE=1 SV=1
Length = 243
Score = 233 bits (594), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 117/235 (49%), Positives = 147/235 (62%), Gaps = 2/235 (0%)
Query: 77 PSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAMAAE 136
P+ PWPH D S+RRG +VY+QV A CHS+S I YR +++E K MAA
Sbjct: 7 PALPWPHFQWFQGLDWRSVRRGKEVYEQVFAPCHSLSFIKYRHFEAFM-SKEEVKNMAAS 65
Query: 137 IEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYV 196
EV D P+++GE RPGK D QPY NEQ AR+AN GA PPDLS+IT ARH G +Y+
Sbjct: 66 FEVDDDPDEKGEARKRPGKRFDTVVQPYKNEQEARYANNGALPPDLSVITNARHGGVDYI 125
Query: 197 FALLTGYRDP-PAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDV 255
+ALLTGY P P GV + YNPYF GG I MP L D +EYEDGTPA+ QM KDV
Sbjct: 126 YALLTGYGRPVPGGVQLSTTQWYNPYFHGGIIGMPPPLTDDMIEYEDGTPASVPQMAKDV 185
Query: 256 VTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLDVVN 310
FL W + P +ERKL+G+K I L++ + +GYY R + +SR+L N
Sbjct: 186 TCFLEWCSNPWWDERKLLGYKTIATLAVIAVSSGYYNRFLSGLWRSRRLAFRPFN 240
>sp|P51131|CYBC_BRAJA Cytochrome b/c1 OS=Bradyrhizobium japonicum (strain USDA 110)
GN=fbcH PE=1 SV=1
Length = 687
Score = 201 bits (512), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 120/269 (44%), Positives = 160/269 (59%), Gaps = 26/269 (9%)
Query: 47 AFALLGAGVSGFLSFATIASADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVC 106
A AL+ AG L ++ A E P W G +D +++RG +VY++VC
Sbjct: 415 AIALVAAGA---LFLGSLQDARANEGSDKPPGNKWSFAGPFGKFDRGALQRGLKVYKEVC 471
Query: 107 ASCHSMSLISYRDLV---GVAYTEDETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQP 163
ASCH +S I++R+L G +Y+ + A A++ ++ DGPND G+MF RPG+ +D FP P
Sbjct: 472 ASCHGLSYIAFRNLAEAGGPSYSVAQVAAFASDYKIKDGPNDAGDMFERPGRPADYFPSP 531
Query: 164 YSNEQAARFANGGAYPPDLSLITKAR------------------HDGQNYVFALLTGYRD 205
+ NEQAAR ANGGA PPDLSLITKAR G +YV A+L G+ +
Sbjct: 532 FPNEQAARAANGGAAPPDLSLITKARSYGRGFPWFIFDFFTQYQEQGPDYVSAVLQGFEE 591
Query: 206 P-PAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAE 264
P GV+I EG +YN YFPG AI MPK L DG + Y+DG+PAT AQ KDV TFL W AE
Sbjct: 592 KVPEGVTIPEGSYYNKYFPGHAIKMPKPLSDGQVTYDDGSPATVAQYSKDVTTFLMWTAE 651
Query: 265 PEMEERKLMGFKWIFVLSLALLQAGYYRR 293
P ME RK +GF+ +FV + Y+ +
Sbjct: 652 PHMEARKRLGFQ-VFVFLIIFAGLMYFTK 679
>sp|P23135|CY1_RHORU Cytochrome c1 OS=Rhodospirillum rubrum GN=petC PE=1 SV=1
Length = 272
Score = 196 bits (497), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 110/258 (42%), Positives = 157/258 (60%), Gaps = 20/258 (7%)
Query: 42 MKSLRAFALLGAGVSGFLSFATIASADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQV 101
M ++ AL+ AG+ L+ A A+E G++ W KGI YD ++RG QV
Sbjct: 1 MTTIVKRALVAAGM--VLAIGGAAQANEG--GVSLHKQDWSWKGIFGRYDQPQLQRGFQV 56
Query: 102 YQQVCASCHSMSLISYRDLVGVAYTEDETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFP 161
+ +VC++CH M ++YR+L + ++ED K +AAE E GP+D G+MFTRPG +D P
Sbjct: 57 FHEVCSTCHGMKRVAYRNLSALGFSEDGIKELAAEKEFPAGPDDNGDMFTRPGTPADHIP 116
Query: 162 QPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAG------------ 209
P++N++AA ANGGA PPDLSL+ KAR G NY+++LL GY G
Sbjct: 117 SPFANDKAAAAANGGAAPPDLSLLAKARPGGPNYIYSLLEGYASDSPGEPAEWWVKQQQE 176
Query: 210 ----VSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEP 265
V+ E ++N YFPG AI+MP L+D + YEDGT AT+ QM +DVV +L+WAAEP
Sbjct: 177 KGLEVAFNEAKYFNDYFPGHAISMPPPLMDDLITYEDGTAATKDQMAQDVVAYLNWAAEP 236
Query: 266 EMEERKLMGFKWIFVLSL 283
E++ RK +G K + L +
Sbjct: 237 ELDARKSLGLKVLLFLGV 254
>sp|P81379|CY1_RHOVI Cytochrome c1 OS=Rhodopseudomonas viridis GN=petC PE=4 SV=1
Length = 282
Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 120/221 (54%), Gaps = 23/221 (10%)
Query: 81 WPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVA---YTEDETKAMAAEI 137
W G YD A +RRG QV+Q VC SCH++ +R+L A + DE + +AA
Sbjct: 37 WSFAGPFGQYDKAQLRRGFQVFQNVCVSCHTLENGGFRNLPSRAAPNWPLDEVRQLAASW 96
Query: 138 EV-VDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKAR------- 189
V V ND+G+ R KL DR P Y+NE AAR + GA PPDLS+I KAR
Sbjct: 97 PVQVKDINDKGDPMQRAPKLPDRIPSQYANEAAARIIHNGAVPPDLSVIAKARTFQRGFP 156
Query: 190 -----------HDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGAL 238
+G +Y+ ALL GY DPP + +G YN YFPG I M + DG +
Sbjct: 157 WWVTDIFTQYNENGVDYIVALLNGYEDPPERFKVPDGSFYNKYFPGHIIGMTPPIADGLV 216
Query: 239 EYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIF 279
Y DGTP T+ Q KDV FL WAAEP ++ RK +G+ W+
Sbjct: 217 TYGDGTPETQLQYSKDVAAFLMWAAEPTLDVRKRIGW-WVL 256
>sp|P13627|CY1_PARDE Cytochrome c1 OS=Paracoccus denitrificans GN=petC PE=1 SV=1
Length = 450
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 113/244 (46%), Gaps = 42/244 (17%)
Query: 84 KGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLV---GVAYTEDETKAMAAEIEVV 140
+G +D ++RG QVY +VC++CH + + R L G ED+ +A AA ++
Sbjct: 223 EGPFGKFDQHQLQRGLQVYTEVCSACHGLRYVPLRTLADEGGPQLPEDQVRAYAANFDIT 282
Query: 141 DGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHD--------- 191
D +E RP +D FP +G PDLSL+ KAR
Sbjct: 283 DPETEE----DRPRVPTDHFPT----------VSGEGMGPDLSLMAKARAGFHGPYGTGL 328
Query: 192 --------GQNYVFALLTGYRDPPAGVSIREG---LHYNPYFPGGAIAMPKMLIDGALEY 240
G Y+ A+LTGY G E L++N F G I M L D + Y
Sbjct: 329 SQLFNGIGGPEYIHAVLTGYD----GEEKEEAGAVLYHNAAFAGNWIQMAAPLSDDQVTY 384
Query: 241 EDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGF-KWIFVLSLALLQAGYYRRLRWSVL 299
EDGTPAT QM DV FL W AEP+M +RK +GF IF++ LA L ++L +
Sbjct: 385 EDGTPATVDQMATDVAAFLMWTAEPKMMDRKQVGFVSVIFLIVLAALLYLTNKKLWQPIK 444
Query: 300 KSRK 303
RK
Sbjct: 445 HPRK 448
>sp|Q02760|CY1_RHOSH Cytochrome c1 OS=Rhodobacter sphaeroides GN=petC PE=1 SV=1
Length = 285
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/266 (32%), Positives = 125/266 (46%), Gaps = 58/266 (21%)
Query: 80 PWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLV---GVAYTEDETKAMAAE 136
P+ +G ++D ++RG QVY +VCA+CH M + R L G ED+ +A A +
Sbjct: 32 PFSFEGPFGTFDQHQLQRGLQVYTEVCAACHGMKFVPIRSLSEPGGPELPEDQVRAYATQ 91
Query: 137 IEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHD----- 191
V D + GE R GK +D FP + E AA DLSL+ KAR
Sbjct: 92 FTVTD--EETGE--DREGKPTDHFPH-SALENAA----------DLSLMAKARAGFHGPM 136
Query: 192 ------------GQNYVFALLTGY-RDPPAGVSIRE--GLHYNPYFPGGA---------- 226
G Y++++LTG+ +PP E G +YN F G+
Sbjct: 137 GTGISQLFNGIGGPEYIYSVLTGFPEEPPKCAEGHEPDGFYYNRAFQNGSVPDTCKDANG 196
Query: 227 --------IAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWI 278
IAMP L+D +EY DG A+ M +DV FL WAAEP++ RK GF +
Sbjct: 197 VKTTAGSWIAMPPPLMDDLVEYADGHDASVHAMAEDVSAFLMWAAEPKLMARKQAGFTAV 256
Query: 279 FVLS-LALLQAGYYRRLRWSVLKSRK 303
L+ L++L +RL W+ +K +K
Sbjct: 257 MFLTVLSVLLYLTNKRL-WAGVKGKK 281
>sp|P0CY49|CY1_RHOCA Cytochrome c1 OS=Rhodobacter capsulatus GN=petC PE=1 SV=1
Length = 280
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/297 (29%), Positives = 132/297 (44%), Gaps = 64/297 (21%)
Query: 50 LLGAGVSGFL--SFATIASADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCA 107
LL + VS + S A +A+++ +H + +GI +D A +RRG QVY +VC+
Sbjct: 4 LLISAVSALVLGSGAALANSNVQDHAFS-------FEGIFGKFDQAQLRRGFQVYSEVCS 56
Query: 108 SCHSMSLISYRDLV---GVAYTEDETKAMAAEIE-VVDGPNDEGEMFTRPGKLSDRFPQP 163
+CH M + R L G + AA ++ ++D D GE R K +D FP
Sbjct: 57 TCHGMKFVPIRTLSDDGGPQLDPTFVREYAAGLDTIID--KDSGE--ERDRKETDMFP-- 110
Query: 164 YSNEQAARFANGGAYPPDLSLITKARHD-----------------GQNYVFALLTGY--R 204
R +G PDLS++ KAR G Y++ +TG+
Sbjct: 111 ------TRVGDGMG--PDLSVMAKARAGFSGPAGSGMNQLFKGIGGPEYIYRYVTGFPEE 162
Query: 205 DPPAGVSIREGLHYNPYFPGGAI------------------AMPKMLIDGALEYEDGTPA 246
+P +G +YN F G + MP L D + YEDGTPA
Sbjct: 163 NPACAPEGIDGYYYNEVFQVGGVPDTCKDAAGIKTTHGSWAQMPPALFDDLVTYEDGTPA 222
Query: 247 TEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRK 303
T QMG+DV +FL WAAEP++ RK MG + +L L + + W+ K +K
Sbjct: 223 TVDQMGQDVASFLMWAAEPKLVARKQMGLVAVVMLGLLSVMLYLTNKRLWAPYKRQK 279
>sp|D5ANZ4|CY1_RHOCB Cytochrome c1 OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC
16581 / SB1003) GN=petC PE=3 SV=1
Length = 279
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/267 (30%), Positives = 116/267 (43%), Gaps = 54/267 (20%)
Query: 77 PSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLV---GVAYTEDETKAM 133
P + + +GI YD A +RRG QVY +VC++CH M + R L G +
Sbjct: 26 PDHAFSFEGIFGKYDQAQLRRGFQVYNEVCSACHGMKFVPIRTLADDGGPQLDPTFVREY 85
Query: 134 AAEIE-VVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKAR--- 189
AA ++ ++D D GE R K +D FP R +G PDLS++ KAR
Sbjct: 86 AAGLDTIID--KDSGE--ERDRKETDMFP--------TRVGDGMG--PDLSVMAKARAGF 131
Query: 190 --------------HDGQNYVFALLTGYR-DPPAGVSIREGLHYNPYFPGGAIA------ 228
G Y++ + G+ +P +G +YN F G +
Sbjct: 132 SGPAGSGMNQLFKGMGGPEYIYNYVIGFEENPECAPEGIDGYYYNKTFQIGGVPDTCKDA 191
Query: 229 ------------MPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFK 276
MP L+D + YEDGTPAT QM +DV FL WAAEP++ RK MG
Sbjct: 192 AGVKITHGSWARMPPPLVDDQVTYEDGTPATVDQMAQDVSAFLMWAAEPKLVARKQMGLV 251
Query: 277 WIFVLSLALLQAGYYRRLRWSVLKSRK 303
+ +L L + + W+ K K
Sbjct: 252 AMVMLGLLSVMLYLTNKRLWAPYKGHK 278
>sp|O31216|CY1_ALLVD Cytochrome c1 OS=Allochromatium vinosum (strain ATCC 17899 / DSM
180 / NBRC 103801 / D) GN=petC PE=4 SV=1
Length = 244
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 87/210 (41%), Gaps = 52/210 (24%)
Query: 91 DHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAMAAEIEVVDGPNDEGEMF 150
D AS++RG + + C CHS+ + Y L ++ +A ++ G G++
Sbjct: 35 DQASLQRGAKYFMNYCTGCHSLQYMRYNRLAKDLGIDE----IALRQNLLFGDAKPGDLI 90
Query: 151 TRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDP--PA 208
T+ +++ A ++ G PPDL+L+T+ R Y + L + Y D P
Sbjct: 91 TK----------AMTDDDALKWF--GVVPPDLTLVTRWRSPDWVYTY-LKSFYLDDTRPY 137
Query: 209 GVSIREGLHYNPYFPGGAIAMPKML----------------------IDGALEYEDG--T 244
GV+ N FP + MP +L I G E+G +
Sbjct: 138 GVN-------NVLFP--LVGMPHVLGDLQGRQEAVMEPSHEPGGEPTIKGVKLVEEGGLS 188
Query: 245 PATEAQMGKDVVTFLSWAAEPEMEERKLMG 274
P M +D+ FL++A EP ER+ +G
Sbjct: 189 PQEYDTMVRDITNFLTYAGEPFQLERERIG 218
>sp|B3R334|LOLA_CUPTR Outer-membrane lipoprotein carrier protein OS=Cupriavidus
taiwanensis (strain R1 / LMG 19424) GN=lolA PE=3 SV=1
Length = 211
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 125 YTEDETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSL 184
+T+ + K A ++V G + +F+RPGK + R+ +PY A Y DL+
Sbjct: 44 FTQRQVKGQGANVKVT-GTSSGTFVFSRPGKFTWRYTKPYEQLLQADGQTLYIYDKDLNQ 102
Query: 185 ITKARHDGQ--NYVFALLTGYRDPPAGVSIREG 215
+T+ + DG + A+L G D +R G
Sbjct: 103 VTERKLDGALGSSPAAILFGSNDLDKNFVVRNG 135
>sp|O27112|KORA_METTH 2-oxoglutarate synthase subunit KorA OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=korA PE=3 SV=3
Length = 376
Score = 35.0 bits (79), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 171 RFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMP 230
R G + PP+ L A DG + A GYR P G++ EG + + P G +
Sbjct: 189 RKRRGPSVPPEEFLPFSAPEDGVPEMPAFGDGYRIPVTGLTHDEGGYPDASNPEGHHRLV 248
Query: 231 KMLIDGALEYEDGTPATEAQMGKDV-VTFLSWAA 263
K L D L + D + ++ +D +T +S+ A
Sbjct: 249 KRLCDKILRHRDRISDVQEELTEDAYITVISYGA 282
>sp|P63887|QCRC_MYCTU Ubiquinol-cytochrome c reductase cytochrome c subunit
OS=Mycobacterium tuberculosis GN=qcrC PE=4 SV=1
Length = 280
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 73 GLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRD----LVGV 123
GLA P P + A +R G Q++ C SCH +L D L+GV
Sbjct: 40 GLAAVLTPTPQVAVADESSSALLRTGKQLFDTSCVSCHGANLQGVPDHGPSLIGV 94
>sp|P63888|QCRC_MYCBO Ubiquinol-cytochrome c reductase cytochrome c subunit
OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
GN=qcrC PE=4 SV=1
Length = 280
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 73 GLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRD----LVGV 123
GLA P P + A +R G Q++ C SCH +L D L+GV
Sbjct: 40 GLAAVLTPTPQVAVADESSSALLRTGKQLFDTSCVSCHGANLQGVPDHGPSLIGV 94
>sp|Q46Y23|LOLA_CUPPJ Outer-membrane lipoprotein carrier protein OS=Cupriavidus
pinatubonensis (strain JMP134 / LMG 1197) GN=lolA PE=3
SV=1
Length = 212
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 125 YTEDETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSL 184
+T+ + K ++V G + +F+RPGK + R+ +PY A Y DL+
Sbjct: 45 FTQRQVKGQGDSLKVT-GTSSGSFVFSRPGKFTWRYAKPYEQLLQADGQTLYIYDKDLNQ 103
Query: 185 ITKARHDGQ--NYVFALLTGYRDPPAGVSIREG 215
+T+ + DG + A+L G D +++ G
Sbjct: 104 VTERKLDGALGSSPAAILFGSNDLEKNFTVKNG 136
>sp|O69583|QCRC_MYCLE Ubiquinol-cytochrome c reductase cytochrome c subunit
OS=Mycobacterium leprae (strain TN) GN=qcrC PE=4 SV=2
Length = 289
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 73 GLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRD----LVGV 123
GLA P P + A +R G Q++ C SCH +L D L+GV
Sbjct: 49 GLAAVLTPTPQVAVADEDSSALLRTGKQLFDTSCVSCHGANLQGVPDHGPSLIGV 103
>sp|Q0KDL8|LOLA_CUPNH Outer-membrane lipoprotein carrier protein OS=Cupriavidus necator
(strain ATCC 17699 / H16 / DSM 428 / Stanier 337)
GN=lolA PE=3 SV=1
Length = 211
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 125 YTEDETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSL 184
+T+ + K A +V G + +F+RPGK + R+ +PY A Y DL+
Sbjct: 44 FTQRQVKGQGANGKVT-GTSSGTFVFSRPGKFTWRYTKPYDQLLQADGQTLYIYDKDLNQ 102
Query: 185 ITKARHDG 192
+T+ + DG
Sbjct: 103 VTERKLDG 110
>sp|Q1LQK4|LOLA_RALME Outer-membrane lipoprotein carrier protein OS=Ralstonia
metallidurans (strain CH34 / ATCC 43123 / DSM 2839)
GN=lolA PE=3 SV=1
Length = 214
Score = 31.6 bits (70), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 9/96 (9%)
Query: 125 YTEDETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGA---YPPD 181
+T+ + K A+++V + +F+RPGK + R+ +PY EQ + A+G Y D
Sbjct: 47 FTQQQMKGKGADLKVASTSSGTF-VFSRPGKFAWRYTKPY--EQLLQ-ADGQVLYIYDKD 102
Query: 182 LSLITKARHDGQ--NYVFALLTGYRDPPAGVSIREG 215
L+ +T+ + DG + A+L G D ++ G
Sbjct: 103 LNQVTERKLDGALGSSPAAILFGSNDLSKNFDVKNG 138
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,682,394
Number of Sequences: 539616
Number of extensions: 5392485
Number of successful extensions: 10288
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 10246
Number of HSP's gapped (non-prelim): 32
length of query: 310
length of database: 191,569,459
effective HSP length: 117
effective length of query: 193
effective length of database: 128,434,387
effective search space: 24787836691
effective search space used: 24787836691
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)