Query 042592
Match_columns 310
No_of_seqs 217 out of 718
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 13:12:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042592.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042592hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pp9_D Cytochrome C-1, cytochr 100.0 1.1E-99 4E-104 700.1 21.0 240 71-310 2-241 (241)
2 3cx5_D Cytochrome C1, heme pro 100.0 1.8E-99 6E-104 700.9 20.8 242 69-310 3-245 (248)
3 2yiu_B Cytochrome C1, heme pro 100.0 8E-85 2.7E-89 606.9 18.9 227 64-305 16-262 (263)
4 2qjy_B Cytochrome C1; cytochro 100.0 5.9E-85 2E-89 609.1 17.9 219 73-306 3-262 (269)
5 1zrt_D Cytochrome C1; cytochro 100.0 1.2E-83 4.3E-88 597.7 23.7 215 74-303 2-257 (258)
6 3o0r_C Nitric oxide reductase 98.5 3.2E-07 1.1E-11 75.5 9.0 24 91-114 45-69 (146)
7 1ycc_A Cytochrome C; electron 98.4 2.8E-07 9.5E-12 72.0 5.5 24 91-114 4-27 (108)
8 2w9k_A Cytochrome C, cytochrom 98.3 5.1E-07 1.8E-11 71.4 5.2 24 91-114 10-33 (114)
9 1w5c_T Cytochrome C-550; photo 98.3 4.6E-07 1.6E-11 76.5 5.1 38 76-113 33-70 (163)
10 1w2l_A Cytochrome oxidase subu 98.3 1.6E-06 5.5E-11 65.8 6.7 22 92-113 3-25 (99)
11 1i54_A Cytochrome C; zinc-porp 98.2 1.2E-06 4.1E-11 67.5 5.4 21 94-114 2-22 (103)
12 1ls9_A Cytochrome C6; omega lo 98.2 2.2E-06 7.6E-11 64.6 6.3 24 90-113 1-24 (91)
13 2c1d_B SOXX; sulfur oxidation, 98.2 3.1E-06 1.1E-10 69.2 6.5 23 92-114 23-49 (137)
14 2l4d_A SCO1/SENC family protei 98.1 1.2E-06 3.9E-11 67.9 3.3 21 94-114 2-22 (110)
15 3mk7_B Cytochrome C oxidase, C 98.1 1.8E-05 6.3E-10 71.4 11.3 71 175-264 102-197 (203)
16 1f1c_A Cytochrome C549; dimeri 98.1 5.7E-06 1.9E-10 66.0 6.9 36 77-112 6-41 (129)
17 1co6_A Protein (cytochrome C2) 98.1 3.1E-06 1E-10 66.2 5.1 20 94-114 2-21 (107)
18 1ccr_A Cytochrome C; electron 98.1 3.6E-06 1.2E-10 66.1 5.3 22 93-114 10-31 (112)
19 1h32_B Cytochrome C, SOXX; ele 98.1 4.9E-06 1.7E-10 68.0 6.3 23 92-114 24-50 (138)
20 1hro_A Cytochrome C2; electron 98.1 2.4E-06 8.4E-11 66.5 3.9 22 93-114 6-27 (106)
21 1jdl_A C552, cytochrome C2, IS 98.1 1.9E-06 6.6E-11 68.6 3.2 20 94-114 4-23 (121)
22 2zxy_A Cytochrome C552, cytoch 98.0 7.6E-06 2.6E-10 60.3 6.1 17 97-113 2-19 (87)
23 1cch_A Cytochrome C551; electr 98.0 1E-05 3.6E-10 59.4 5.8 19 96-114 1-20 (82)
24 1mz4_A Cytochrome C550; PSII a 97.9 1.6E-05 5.6E-10 64.8 6.5 26 88-113 19-44 (137)
25 3cp5_A Cytochrome C; electron 97.9 2.8E-05 9.4E-10 61.7 7.6 26 88-113 27-52 (124)
26 1cyi_A Cytochrome C6, cytochro 97.9 1.1E-05 3.8E-10 60.4 4.9 20 94-113 2-21 (90)
27 1c75_A Cytochrome C-553; heme, 97.9 1.1E-05 3.6E-10 58.6 4.6 18 97-114 2-19 (71)
28 1c6r_A Cytochrome C6; electron 97.9 1.4E-05 4.7E-10 59.6 5.0 21 93-113 2-22 (89)
29 1qn2_A Cytochrome CH; electron 97.9 9.9E-06 3.4E-10 62.5 4.0 19 94-113 3-21 (100)
30 155c_A Cytochrome C550; electr 97.8 9.5E-06 3.3E-10 67.8 3.8 20 94-114 5-24 (135)
31 1cno_A Cytochrome C552; electr 97.8 6.7E-06 2.3E-10 61.8 2.1 20 94-114 3-22 (87)
32 3ph2_B Cytochrome C6; photosyn 97.8 2.1E-05 7E-10 58.0 4.7 20 93-112 2-21 (86)
33 3dr0_A Cytochrome C6; photosyn 97.8 2.6E-05 8.9E-10 57.9 5.2 20 94-113 2-21 (93)
34 2exv_A Cytochrome C-551; alpha 97.8 4.5E-05 1.5E-09 56.1 6.4 18 97-114 2-20 (82)
35 1c2n_A Cytochrome C2; electron 97.7 1.4E-05 4.7E-10 66.1 3.2 19 95-114 24-42 (137)
36 3m97_X Cytochrome C-552, cytoc 97.7 2E-05 6.8E-10 66.8 4.1 21 91-112 40-60 (140)
37 1c53_A Cytochrome C553; electr 97.7 4E-05 1.4E-09 56.6 4.9 17 97-114 2-18 (79)
38 2blf_B SORB, sulfite\:cytochro 97.7 2.2E-05 7.7E-10 59.9 3.1 22 96-117 19-40 (81)
39 1i8o_A Cytochrome C2; electron 97.6 3.4E-05 1.2E-09 61.4 3.4 17 94-111 2-18 (114)
40 2gc4_D Cytochrome C-L; electro 97.5 6.3E-05 2.1E-09 62.3 4.5 24 91-114 42-65 (147)
41 2zzs_A Cytochrome C554; C-type 97.5 2.1E-05 7.3E-10 60.5 1.5 20 94-114 23-42 (103)
42 3c2c_A Cytochrome C2; electron 97.4 4.9E-05 1.7E-09 59.8 2.4 20 94-114 3-22 (112)
43 1vyd_A Cytochrome C2; electron 97.4 2.7E-05 9.1E-10 63.4 0.7 20 94-114 2-21 (116)
44 2d0w_A Cytochrome CL; electron 97.4 0.00013 4.6E-09 62.3 5.0 24 91-114 44-67 (170)
45 2c8s_A Cytochrome C-L; HAEM, h 97.4 0.00032 1.1E-08 60.2 7.4 24 91-114 50-73 (172)
46 2d0s_A Cytochrome C, cytochrom 97.4 0.00041 1.4E-08 50.8 6.4 17 98-114 1-18 (79)
47 1nir_A Nitrite reductase; hemo 97.3 0.00035 1.2E-08 68.8 6.6 26 89-114 30-55 (543)
48 1a56_A C-551, ferricytochrome 97.2 0.00046 1.6E-08 50.8 5.4 17 98-114 1-18 (81)
49 1wve_C 4-cresol dehydrogenase 97.1 0.00013 4.6E-09 54.2 1.6 40 94-133 3-42 (80)
50 1qks_A Cytochrome CD1 nitrite 97.1 0.0011 3.7E-08 66.5 7.9 26 89-114 48-73 (567)
51 3a9f_A Cytochrome C; alpha hel 97.0 0.00062 2.1E-08 54.0 4.5 22 95-116 27-48 (92)
52 3mk7_C Cytochrome C oxidase, C 97.0 0.00056 1.9E-08 63.8 4.9 24 91-114 128-151 (311)
53 1c52_A Cytochrome-C552; electr 97.0 0.00019 6.5E-09 58.3 1.3 17 97-114 3-19 (131)
54 1gdv_A Cytochrome C6; RED ALGA 97.0 0.00017 5.7E-09 52.9 0.9 21 94-114 2-22 (85)
55 3oa8_B SOXX; cytochrome, sulfu 97.0 0.0021 7E-08 57.9 8.0 65 176-266 139-206 (208)
56 2zoo_A Probable nitrite reduct 96.9 0.00041 1.4E-08 66.9 3.0 25 90-114 334-358 (442)
57 1m70_A Cytochrome C4; electron 96.9 0.00039 1.3E-08 58.6 2.3 24 91-114 96-127 (190)
58 1f1f_A Cytochrome C6; heme, pr 96.9 0.00023 7.8E-09 52.7 0.7 21 94-114 2-22 (89)
59 3mk7_C Cytochrome C oxidase, C 96.8 0.00083 2.8E-08 62.6 4.5 24 91-114 218-241 (311)
60 3dp5_A OMCF, cytochrome C fami 96.8 0.0002 6.9E-09 55.6 0.1 26 88-113 12-37 (99)
61 3dmi_A Cytochrome C6; electron 96.8 0.00022 7.4E-09 52.7 0.3 19 94-112 2-20 (88)
62 2ce0_A Cytochrome C6; chloropl 96.8 0.00034 1.2E-08 53.5 1.3 22 93-114 3-24 (105)
63 1kb0_A Quinohemoprotein alcoho 96.8 0.0017 6E-08 65.9 6.8 34 79-114 579-612 (677)
64 3cu4_A Cytochrome C family pro 96.7 0.00046 1.6E-08 51.1 1.4 21 93-113 3-23 (85)
65 2zon_G Cytochrome C551; nitrit 96.5 0.00036 1.2E-08 51.9 -0.1 22 93-114 7-28 (87)
66 1ayg_A Cytochrome C-552; elect 96.5 0.0023 8E-08 46.9 4.3 15 100-114 3-18 (80)
67 1h1o_A Cytochrome C-552; elect 96.5 0.00061 2.1E-08 57.1 1.0 21 93-114 4-24 (183)
68 1e29_A Cytochrome C549; electr 96.4 0.00069 2.3E-08 55.8 0.9 31 81-111 12-42 (135)
69 1kx2_A Mono-heme C-type cytoch 96.4 0.00049 1.7E-08 51.2 -0.0 20 94-113 2-21 (81)
70 2yev_B Cytochrome C oxidase su 95.3 0.00059 2E-08 64.9 0.0 19 96-114 237-255 (337)
71 1cc5_A Cytochrome C5; electron 95.9 0.00093 3.2E-08 50.4 -0.8 20 94-113 3-22 (83)
72 2bh4_X Cytochrome C-550; C-typ 95.9 0.0014 4.8E-08 54.3 0.2 20 94-114 4-23 (134)
73 1m70_A Cytochrome C4; electron 95.5 0.0053 1.8E-07 51.6 2.0 20 94-114 3-22 (190)
74 2xts_B Cytochrome; oxidoreduct 95.1 0.0049 1.7E-07 54.5 0.9 25 90-114 30-54 (205)
75 3vrd_A FCCA subunit, flavocyto 95.1 0.012 4E-07 50.1 3.1 45 192-263 33-77 (174)
76 1pby_A Quinohemoprotein amine 95.0 0.016 5.5E-07 58.1 4.2 18 97-114 2-19 (489)
77 1cxc_A Cytochrome C2; electron 94.9 0.0057 2E-07 49.8 0.6 20 94-114 4-23 (124)
78 1jmx_A Amine dehydrogenase; ox 94.2 0.023 7.7E-07 57.1 3.1 19 96-114 2-20 (494)
79 1kv9_A Type II quinohemoprotei 94.2 0.015 5.3E-07 58.7 1.9 26 89-114 574-599 (668)
80 1yiq_A Quinohemoprotein alcoho 94.1 0.015 5.1E-07 59.2 1.7 26 89-114 589-614 (689)
81 1h1o_A Cytochrome C-552; elect 94.1 0.011 3.8E-07 49.3 0.6 25 90-114 95-127 (183)
82 1gks_A Cytochrome C551; haloph 93.5 0.014 4.9E-07 42.8 0.2 18 97-114 1-22 (78)
83 3vrd_A FCCA subunit, flavocyto 93.2 0.037 1.3E-06 47.0 2.3 26 89-114 84-109 (174)
84 4aan_A Cytochrome C551 peroxid 93.1 0.13 4.3E-06 49.4 6.0 127 93-234 200-340 (341)
85 2c1d_A SOXA; sulfur oxidation, 91.6 0.044 1.5E-06 50.0 0.8 24 90-113 157-187 (264)
86 2vhd_A Cytochrome C551 peroxid 91.5 0.092 3.2E-06 49.6 2.9 22 93-114 183-205 (323)
87 1zzh_A Cytochrome C peroxidase 91.3 0.084 2.9E-06 50.0 2.4 22 93-114 186-208 (328)
88 1iqc_A DI-heme peroxidase; pro 91.2 0.087 3E-06 49.4 2.4 23 92-114 168-191 (308)
89 2c1v_A DI-HAEM cytochrome C pe 91.2 0.087 3E-06 50.3 2.4 22 93-114 197-219 (338)
90 1h32_A SOXA, diheme cytochrome 90.8 0.053 1.8E-06 49.4 0.5 23 91-113 155-184 (261)
91 1nml_A DI-HAEM cytochrome C pe 90.5 0.11 3.8E-06 49.1 2.4 22 93-114 183-205 (326)
92 3o5c_A Cytochrome C551 peroxid 90.0 0.13 4.3E-06 49.0 2.4 23 92-114 176-199 (320)
93 3hq9_A Cytochrome C551 peroxid 89.1 0.16 5.6E-06 48.8 2.4 21 93-113 205-226 (345)
94 3oa8_A SOXA; cytochrome, sulfu 87.3 0.17 5.9E-06 46.8 1.2 20 93-112 51-77 (275)
95 1e8e_A Cytochrome C''; oxidore 86.0 0.053 1.8E-06 45.4 -2.6 26 89-114 22-57 (124)
96 1jmx_A Amine dehydrogenase; ox 83.4 0.24 8.3E-06 49.8 0.3 34 94-133 88-122 (494)
97 1dw0_A Cytochrome C; asparagin 83.4 0.25 8.5E-06 40.6 0.3 21 94-114 21-51 (112)
98 2c1d_A SOXA; sulfur oxidation, 82.9 0.4 1.4E-05 43.7 1.4 22 92-113 59-87 (264)
99 3sjl_A Methylamine utilization 81.3 0.69 2.4E-05 44.8 2.5 21 93-113 187-208 (373)
100 1h32_A SOXA, diheme cytochrome 80.9 0.37 1.3E-05 43.8 0.5 22 92-113 55-83 (261)
101 3oa8_A SOXA; cytochrome, sulfu 80.5 0.38 1.3E-05 44.5 0.4 25 90-114 160-191 (275)
102 1fgj_A Hydroxylamine oxidoredu 78.0 0.098 3.4E-06 52.9 -4.8 17 100-116 354-370 (546)
103 1zzh_A Cytochrome C peroxidase 74.4 1.1 3.7E-05 42.3 1.7 25 90-114 29-62 (328)
104 1nml_A DI-HAEM cytochrome C pe 74.2 1.7 5.9E-05 40.9 2.9 25 89-113 25-58 (326)
105 2vhd_A Cytochrome C551 peroxid 73.3 1.1 3.8E-05 42.2 1.4 25 89-113 25-58 (323)
106 3hq9_A Cytochrome C551 peroxid 73.0 2.1 7.1E-05 41.1 3.2 26 89-114 47-81 (345)
107 1iqc_A DI-heme peroxidase; pro 72.9 2.2 7.4E-05 39.9 3.2 26 89-114 13-47 (308)
108 2c1v_A DI-HAEM cytochrome C pe 71.3 1.2 4.1E-05 42.4 1.1 26 89-114 39-73 (338)
109 2fw5_A DHC, diheme cytochrome 67.1 2 6.8E-05 36.4 1.5 17 98-114 16-32 (139)
110 2fwt_A DHC, diheme cytochrome 66.8 2 7E-05 35.7 1.5 17 98-114 5-21 (125)
111 2ykz_A Cytochrome C'; electron 66.0 2.2 7.5E-05 34.6 1.5 22 91-112 101-122 (127)
112 2j8w_A Cytochrome C'; heme, ir 65.7 2.2 7.6E-05 34.7 1.5 21 91-111 104-124 (129)
113 1mqv_A Cytochrome C'; four-hel 65.4 2.3 7.8E-05 34.5 1.5 22 91-112 98-119 (125)
114 1cpq_A Cytochrome C'; electron 65.3 2.3 7.8E-05 34.7 1.5 21 91-111 103-123 (129)
115 3ayf_A Nitric oxide reductase; 63.2 7.6 0.00026 41.2 5.3 73 36-112 14-87 (800)
116 2gqb_A Conserved hypothetical 62.4 2.5 8.4E-05 35.6 1.2 51 122-182 78-128 (130)
117 2ccy_A Cytochrome C; electron 59.2 2.9 0.0001 34.0 1.0 20 91-111 104-123 (128)
118 3vrc_A Cytochrome C'; C-type c 59.0 3.5 0.00012 34.0 1.5 21 91-111 106-126 (131)
119 1pby_A Quinohemoprotein amine 51.3 3.5 0.00012 41.4 0.4 33 95-133 89-122 (489)
120 3o5c_A Cytochrome C551 peroxid 48.7 10 0.00034 35.9 3.0 26 88-113 20-54 (320)
121 1s05_A Cytochrome C-556, C556; 47.6 2.8 9.4E-05 34.3 -0.9 22 91-112 102-123 (129)
122 1b9u_A Protein (ATP synthase); 47.6 13 0.00044 23.5 2.5 23 278-300 8-30 (34)
123 3de8_A Soluble cytochrome B562 47.5 5.7 0.0002 31.1 1.0 21 91-111 83-103 (106)
124 3u99_A Diheme cytochrome C; cy 47.1 6.3 0.00022 33.6 1.2 13 100-112 13-25 (148)
125 2ww9_B Protein transport prote 45.3 73 0.0025 24.5 6.9 49 244-292 21-69 (80)
126 1gqa_A Cytochrome C'; electron 44.0 8.1 0.00028 31.4 1.4 20 92-111 105-124 (130)
127 1rh5_B Preprotein translocase 43.2 48 0.0016 25.1 5.5 46 247-292 11-56 (74)
128 3mp7_B Preprotein translocase 42.4 37 0.0013 24.8 4.6 45 248-292 8-52 (61)
129 2wwb_B SEC61gamma, protein tra 36.5 58 0.002 24.2 5.0 47 246-292 9-55 (68)
130 2jwa_A Receptor tyrosine-prote 31.8 45 0.0015 23.0 3.3 18 277-294 21-38 (44)
131 3h2y_A GTPase family protein; 30.7 14 0.00048 34.8 0.9 33 103-137 34-66 (368)
132 4aan_A Cytochrome C551 peroxid 29.7 24 0.00082 33.6 2.3 24 90-113 43-75 (341)
133 1m6e_X S-adenosyl-L-methionnin 29.1 34 0.0012 32.6 3.2 50 214-263 127-196 (359)
134 2juz_A UPF0352 protein HI0840; 28.8 14 0.00049 28.6 0.4 21 177-202 27-47 (80)
135 3rt3_C NS1, NS1B, non-structur 27.4 42 0.0014 26.5 2.9 23 262-284 64-91 (109)
136 1ci3_M Protein (cytochrome F); 27.1 18 0.00061 33.3 0.9 11 104-114 19-29 (249)
137 1hcz_A Cytochrome F; electron 27.0 18 0.00062 33.3 0.9 11 104-114 19-29 (252)
138 1e2w_A Cytochrome F; electron 27.0 18 0.00062 33.3 0.9 11 104-114 19-29 (251)
139 2efj_A 3,7-dimethylxanthine me 26.0 56 0.0019 31.4 4.2 51 213-263 136-212 (384)
140 3ec1_A YQEH GTPase; atnos1, at 25.4 19 0.00063 33.9 0.7 33 103-137 36-68 (369)
141 2jr2_A UPF0352 protein CPS_261 24.6 14 0.00049 28.3 -0.2 20 177-201 27-46 (76)
142 2juw_A UPF0352 protein SO_2176 24.4 14 0.00049 28.6 -0.2 20 177-201 27-46 (80)
143 2jpq_A UPF0352 protein VP2129; 23.7 15 0.00052 28.6 -0.2 20 177-201 27-46 (83)
144 1vf5_C Cytochrome F; photosynt 23.6 23 0.00078 33.2 0.9 9 105-113 21-29 (289)
145 2jrx_A UPF0352 protein YEJL; h 23.0 16 0.00055 28.5 -0.2 20 177-201 27-46 (83)
146 2jxm_B Cytochrome F; copper, e 21.9 18 0.00062 33.2 -0.2 11 104-114 19-29 (249)
147 3b42_A GSU0935, methyl-accepti 20.8 26 0.0009 28.1 0.6 10 103-112 103-112 (135)
No 1
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=100.00 E-value=1.1e-99 Score=700.10 Aligned_cols=240 Identities=61% Similarity=1.062 Sum_probs=236.5
Q ss_pred ccCCCCCCCCCCCCCCCCCcchHHHHhHHHHHHHhhcccccccccchhhcccCCCCHHHHHHHHHhhcccCCCCCCCCCc
Q 042592 71 EHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAMAAEIEVVDGPNDEGEMF 150 (310)
Q Consensus 71 ~~~~~~~~~~w~~~g~~~~~D~aslqRG~qvy~~vCaaCHSlk~v~yr~L~~~g~te~evka~Aae~~v~d~p~~~g~~f 150 (310)
++..||++++|+|+|+|+++|++|||||+|||+|||++|||++|++||+|.++|+||+|||++|++++|+|+|||+|+||
T Consensus 2 ~~~~~~~~~~w~~~g~~~~~D~~slqRG~qvy~~~CaaCHSl~y~~~r~l~~~g~te~evk~~a~~~~v~d~p~~~g~~f 81 (241)
T 1pp9_D 2 DLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEDEAKALAEEVEVQDGPNEDGEMF 81 (241)
T ss_dssp CCCCCCCCCCCTTCSTTCCCCHHHHHHHHHHHHHTGGGTCCCTTCBGGGGBTTTBCHHHHHHHHHTSEEEECCCTTSCCE
T ss_pred CCCCCCCCCCCCCCCCCCCcchHHHhhhHHHHHHhhhhccCccccccccccccCCCHHHHHHHHHhcccCCCcccccccc
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHcCCCCCCCchhHHhhhcCChHHHHHHHhcCCCCCCCcccCCCCcCCCCCCCCcccCc
Q 042592 151 TRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMP 230 (310)
Q Consensus 151 ~rp~~~~D~~~sp~~n~~Aa~~An~Ga~PPDLSliakaR~~G~dYIyslL~gy~dpP~g~~~~~g~~yN~~fpg~~iaMP 230 (310)
+|+++++|+||+||+|++|||++|+|+.|||||+|+|||++|+|||||||+||.|||.|+++++|+|||+||||+.|+||
T Consensus 82 ~r~~k~~D~~~~p~~n~~Aa~~an~Ga~PPDLSliaraR~gG~dyIyslL~Gy~dpp~G~~~~~G~~~N~~Fpg~~iaMP 161 (241)
T 1pp9_D 82 MRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARHGGEDYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMA 161 (241)
T ss_dssp EEECCTTSBCCCSSSSHHHHHHHTTTCCCCCCSSTTTSSTTHHHHHHHHHTCCCCCCTTCCCCTTCEECTTSTTSEESSC
T ss_pred cCCccHhhhcccCCChHHHHHHHhCCCCCCchHHHHHHhcCCHHHHHHHHhCCCCCCCccccCCcccccccCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccccCCChhhHhhhHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceeeeccCC
Q 042592 231 KMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLDVVN 310 (310)
Q Consensus 231 ~~L~d~~v~y~DGtpat~~Q~akDVvaFL~waAEP~~~~Rk~~G~~Vl~fL~il~~l~y~~Kr~~W~~vk~rk~~~~~~~ 310 (310)
+||+++||+|+||||+|++|+++||++||+|++||++++||+||++||+||+||++|+|++||++|++||+|||+|+|++
T Consensus 162 ~~L~~~~v~y~dGtp~~~~q~a~Dvv~FL~w~aEP~~~~Rk~~G~~vl~fL~il~~l~y~~kr~~W~~vk~~~~~~~~~~ 241 (241)
T 1pp9_D 162 PPIYNEVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLMMGLLLPLVYAMKRHKWSVLKSRKLAYRPPK 241 (241)
T ss_dssp CCCCTTSSCCTTCCCCCHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEECCCC
T ss_pred ccccccceecCCCCccchHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCceecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
No 2
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=100.00 E-value=1.8e-99 Score=700.86 Aligned_cols=242 Identities=55% Similarity=1.002 Sum_probs=236.4
Q ss_pred hhccCCCCCCCCCCCCCCCCCcchHHHHhHHHHHHHhhcccccccccchhhcccCCCCHHHHHHHHHhhcccCCCCCCCC
Q 042592 69 EAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAMAAEIEVVDGPNDEGE 148 (310)
Q Consensus 69 a~~~~~~~~~~~w~~~g~~~~~D~aslqRG~qvy~~vCaaCHSlk~v~yr~L~~~g~te~evka~Aae~~v~d~p~~~g~ 148 (310)
+++++.||++++|+|+|+|+++|++|||||+|||+|||++|||++|++||+|.++|+||+|+|+||++++|+|+|||+|+
T Consensus 3 ~~~~~~~~~~~~w~~~g~~~~~D~aslqRG~qvy~~~CaaCHsl~~v~yr~l~~~g~te~evk~~a~~~~v~d~~~~~g~ 82 (248)
T 3cx5_D 3 AAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHTNEEVRNMAEEFEYDDEPDEQGN 82 (248)
T ss_dssp HHHHCCCCCCCCCTTCSTTCCCCHHHHHHHHHHHHHTGGGTCCCTTCBGGGGBTTTBCHHHHHHHHTTSEEECCCCTTCC
T ss_pred ccccCCCCCCCCCCCCCCCCCcchHhHhhhHHHHHHhhhhccCcccccccccccCCCCHHHHHHHHHhhccCCCcccccC
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCCCCCCCCCCCCCChHHHHHHHcCCCCCCCchhHHhhhcCChHHHHHHHhcC-CCCCCCcccCCCCcCCCCCCCCcc
Q 042592 149 MFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGY-RDPPAGVSIREGLHYNPYFPGGAI 227 (310)
Q Consensus 149 ~f~rp~~~~D~~~sp~~n~~Aa~~An~Ga~PPDLSliakaR~~G~dYIyslL~gy-~dpP~g~~~~~g~~yN~~fpg~~i 227 (310)
||+|+++++|+||+||+|++||++||||+.|||||||+|||++|+|||||||+|| .|||.|+.+++|+|||+||||+.|
T Consensus 83 ~~~r~g~~~D~~~~p~~n~~Aa~aan~Ga~PPDLSliaraR~gG~dyIyslL~Gy~~dpp~g~~~~~G~~yN~~fpg~~i 162 (248)
T 3cx5_D 83 PKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIVKARHGGCDYIFSLLTGYPDEPPAGVALPPGSNYNPYFPGGSI 162 (248)
T ss_dssp CCEEECCTTSBCCCSCSSHHHHHHTTTTCCCCCCSSTTTSSTTHHHHHHHHHHCCCSSCCTTCCCCTTCEECTTSTTSEE
T ss_pred cccCCCchhhccccCCChHHHHHHHhCCCCCCchHHHHHHHcCChHHHHHHHhccccCCccccccCCCccccccCCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999 559999999999999999999999
Q ss_pred cCccccccCcccccCCChhhHhhhHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccceeeec
Q 042592 228 AMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVLD 307 (310)
Q Consensus 228 aMP~~L~d~~v~y~DGtpat~~Q~akDVvaFL~waAEP~~~~Rk~~G~~Vl~fL~il~~l~y~~Kr~~W~~vk~rk~~~~ 307 (310)
+||+||++++|+|+||||+|++|+++|||+||+|++||++++||+||+|||+||+||++|+|++||++|++||+|||+|+
T Consensus 163 aMP~~L~~~~v~~~dGtpa~~~q~a~Dvv~FL~w~aEP~~~~Rk~~G~~vl~fL~il~~l~y~~kr~~W~~vk~~k~~~~ 242 (248)
T 3cx5_D 163 AMARVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFVFN 242 (248)
T ss_dssp SSCCCCCTTSSCCTTCCCCCHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCccccccceecCCCCccchHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 042592 308 VVN 310 (310)
Q Consensus 308 ~~~ 310 (310)
|++
T Consensus 243 ~~~ 245 (248)
T 3cx5_D 243 PPK 245 (248)
T ss_dssp CCC
T ss_pred CCC
Confidence 874
No 3
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=100.00 E-value=8e-85 Score=606.86 Aligned_cols=227 Identities=34% Similarity=0.589 Sum_probs=196.1
Q ss_pred hhhhhhhccCCCCCCCCCCCCCCCCCcchHHHHhHHHHHHHhhcccccccccchhhcccCC---CCHHHHHHHHHhhccc
Q 042592 64 IASADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVA---YTEDETKAMAAEIEVV 140 (310)
Q Consensus 64 ~~~a~a~~~~~~~~~~~w~~~g~~~~~D~aslqRG~qvy~~vCaaCHSlk~v~yr~L~~~g---~te~evka~Aae~~v~ 140 (310)
++++.++....||++++|+|+|+|++||++|||||+|||+|||++||||+|++||+|.|.| +||+|||++|++++|.
T Consensus 16 ~~~~~~s~~~~~~~~~~w~f~g~f~~~D~aslqRG~qVy~evCaaCHsl~~v~yr~L~d~Ggp~~te~evka~a~~~~v~ 95 (263)
T 2yiu_B 16 AQEAGDSHAAAHIEDISFSFEGPFGKFDQHQLQRGLQVYTEVCSACHGLRYVPLRTLADEGGPQLPEDQVRAYAANFDIT 95 (263)
T ss_dssp --------------CCCCTTSSTTCCCCHHHHHHHHHHHHHTGGGTCCCTTCBGGGGGSTTSCCCCHHHHHHHHTTSEEE
T ss_pred cccccCcccCCCCCCCCCCCCCccCccchHHHHHHHHHHHHHhhccCCcccchhHhhhhccCCCCCHHHHHHHHhhcccc
Confidence 3445566677899999999999999999999999999999999999999999999999887 9999999999999999
Q ss_pred CCCCCCCCCcCCCCCCCCCCCCCCChHHHHHHHcCCCCCCCchhHHhhhc-----------------CChHHHHHHHhcC
Q 042592 141 DGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARH-----------------DGQNYVFALLTGY 203 (310)
Q Consensus 141 d~p~~~g~~f~rp~~~~D~~~sp~~n~~Aa~~An~Ga~PPDLSliakaR~-----------------~G~dYIyslL~gy 203 (310)
| ++ +|+ +||++++|++|+ ||+|+.|||||||+|+|+ +|+||||+|||||
T Consensus 96 d-~~-~G~--~r~~~~~D~~p~----------an~Ga~PPDLSliakaR~g~~g~~~~~f~~~~~~~gG~dYIyslLtGY 161 (263)
T 2yiu_B 96 D-PE-TEE--DRPRVPTDHFPT----------VSGEGMGPDLSLMAKARAGFHGPYGTGLSQLFNGIGGPEYIHAVLTGY 161 (263)
T ss_dssp C-SS-SSS--EEECCTTSBCCC----------CCSTTCCCCCTTHHHHC-----------------CCHHHHHHHHHTCB
T ss_pred C-Cc-ccc--ccCCCChHHhHH----------hhCCCCCCChHHHHHHhcccccccccccchhhcccCcHHHHHHHHhCC
Confidence 8 43 675 799999999997 689999999999999996 5899999999999
Q ss_pred CCCCCCcccCCCCcCCCCCCCCcccCccccccCcccccCCChhhHhhhHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHH
Q 042592 204 RDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSL 283 (310)
Q Consensus 204 ~dpP~g~~~~~g~~yN~~fpg~~iaMP~~L~d~~v~y~DGtpat~~Q~akDVvaFL~waAEP~~~~Rk~~G~~Vl~fL~i 283 (310)
.+||.+.. .+|+|||+||||+.|+||+||++++|+|+||||+|++|+++||++||+|++||++++||+||+|||+||+|
T Consensus 162 ~~~p~~~~-g~~~~~N~~mPg~~iaMp~~L~d~~V~y~DGtpat~~q~a~DVvaFL~waaEP~~~~Rk~lG~~vl~fL~i 240 (263)
T 2yiu_B 162 DGEEKEEA-GAVLYHNAAFAGNWIQMAAPLSDDQVTYEDGTPATVDQMATDVAAFLMWTAEPKMMDRKQVGFVSVIFLIV 240 (263)
T ss_dssp CSCCC------CCEEBSSSSSSEESSCCCCCTTSSCCTTCCCCCHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCC-CCccccCCCCCCccccccccccccccccCCCCccchhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 98888876 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccccceee
Q 042592 284 ALLQAGYYRRLRWSVLKSRKLV 305 (310)
Q Consensus 284 l~~l~y~~Kr~~W~~vk~rk~~ 305 (310)
|++|+|++||++|++||+||..
T Consensus 241 l~~l~y~~kr~~W~~vk~~~~~ 262 (263)
T 2yiu_B 241 LAALLYLTNKKLWQPIKHPRKP 262 (263)
T ss_dssp HHHHHHHHHHHHHTTTC-----
T ss_pred HHHHHHHHHHHHhhhcccccCC
Confidence 9999999999999999999863
No 4
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=100.00 E-value=5.9e-85 Score=609.09 Aligned_cols=219 Identities=37% Similarity=0.676 Sum_probs=204.5
Q ss_pred CCCCCCCCCCCCCCCCCcchHHHHhHHHHHHHhhcccccccccchhhcccCC---CCHHHHHHHHHhhcccCCCCCCCCC
Q 042592 73 GLACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVA---YTEDETKAMAAEIEVVDGPNDEGEM 149 (310)
Q Consensus 73 ~~~~~~~~w~~~g~~~~~D~aslqRG~qvy~~vCaaCHSlk~v~yr~L~~~g---~te~evka~Aae~~v~d~p~~~g~~ 149 (310)
+.|+++++|+|+|+|++||++|||||+|||+|||++||||+|++||+|.|+| +||+|||++|++++|.| + ++|+
T Consensus 3 ~~~~~~~~wsf~g~f~~~D~asLqRG~qVy~evCaaCHsl~~v~yr~L~d~ggp~~te~evka~a~~~~v~d-~-~~G~- 79 (269)
T 2qjy_B 3 GGHVEDVPFSFEGPFGTFDQHQLQRGLQVYTEVCAACHGMKFVPIRSLSEPGGPELPEDQVRAYATQFTVTD-E-ETGE- 79 (269)
T ss_dssp CCCCCCCCCTTCSTTCCCCHHHHHHHHHHHHHTGGGTCCCTTCBGGGGTSTTTTCCCHHHHHHHGGGSEEEC-T-TTCS-
T ss_pred CCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHhhcCCchhhhHHHHHhccCccCCHHHHHHHHhhccccC-C-Cccc-
Confidence 4689999999999999999999999999999999999999999999999887 99999999999999999 3 4887
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHcCCCCCCCchhHHhhhc-----------------CChHHHHHHHhcC-CCCCCCcc
Q 042592 150 FTRPGKLSDRFPQPYSNEQAARFANGGAYPPDLSLITKARH-----------------DGQNYVFALLTGY-RDPPAGVS 211 (310)
Q Consensus 150 f~rp~~~~D~~~sp~~n~~Aa~~An~Ga~PPDLSliakaR~-----------------~G~dYIyslL~gy-~dpP~g~~ 211 (310)
+|+++++|++|+ |||+.|||||||+|||+ +|+|||||||||| .+||+++.
T Consensus 80 -~r~~~~~D~~p~-----------n~Ga~PPDLSliaraR~g~~g~~~~~~~~~~~~~gG~dYIyslLtGy~~~~p~~~~ 147 (269)
T 2qjy_B 80 -DREGKPTDHFPH-----------SALENAPDLSLMAKARAGFHGPMGTGISQLFNGIGGPEYIYSVLTGFPEEPPKCAE 147 (269)
T ss_dssp -EEECCTTSBCCC-----------CSSTTSCCCSSTTTSCCCCCCSTTCSHHHHHHCCCHHHHHHHHHHCCCSSCCGGGT
T ss_pred -ccCCCChhhhhh-----------hcCCCCCCccHHHHHhcccccccccccchhcccCCcHHHHHHHHhcCCCCCCcccc
Confidence 799999999994 79999999999999996 6999999999999 99998887
Q ss_pred --cCCCCcCCCCC------------------CCCcccCccccccCcccccCCChhhHhhhHHHHHHHHhhhcCCcHHHHH
Q 042592 212 --IREGLHYNPYF------------------PGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERK 271 (310)
Q Consensus 212 --~~~g~~yN~~f------------------pg~~iaMP~~L~d~~v~y~DGtpat~~Q~akDVvaFL~waAEP~~~~Rk 271 (310)
+++|+|||+|| ||+.|+||+||.|++|+|+||||+|++|+++|||+||+|+|||++++||
T Consensus 148 g~~~~G~~~N~~f~n~~mP~~l~~~qg~~~~~G~~i~M~~pL~d~~v~y~dgtpat~~q~a~DVvaFL~waaEP~~~~Rk 227 (269)
T 2qjy_B 148 GHEPDGFYYNRAFQNGSVPDTCKDANGVKTTAGSWIAMPPPLMDDLVEYADGHDASVHAMAEDVSAFLMWAAEPKLMARK 227 (269)
T ss_dssp TCCCTTCEEESSCCSSBCCGGGBCTTSCBCSSSEEESSCCCCCTTSSCCTTCCCCCHHHHHHHHHHHHHHHHCTTHHHHH
T ss_pred cccCCcccccccccCCCCCcchhcccCCccCCCcccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 89999999998 6888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccceeee
Q 042592 272 LMGFKWIFVLSLALLQAGYYRRLRWSVLKSRKLVL 306 (310)
Q Consensus 272 ~~G~~Vl~fL~il~~l~y~~Kr~~W~~vk~rk~~~ 306 (310)
+||++||+||+||++|+|++||++|++||+|||+-
T Consensus 228 ~lG~~Vl~fL~il~~l~y~~kr~~W~~vk~~~~~~ 262 (269)
T 2qjy_B 228 QAGFTAVMFLTVLSVLLYLTNKRLWAGVKGKKKTN 262 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccccceec
Confidence 99999999999999999999999999999999974
No 5
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}
Probab=100.00 E-value=1.2e-83 Score=597.70 Aligned_cols=215 Identities=37% Similarity=0.653 Sum_probs=205.5
Q ss_pred CCCCCCCCCCCCCCCCcchHHHHhHHHHHHHhhcccccccccchhhcccCC---CCHHHHHHHHHhh-cccCCCCCCCCC
Q 042592 74 LACPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVA---YTEDETKAMAAEI-EVVDGPNDEGEM 149 (310)
Q Consensus 74 ~~~~~~~w~~~g~~~~~D~aslqRG~qvy~~vCaaCHSlk~v~yr~L~~~g---~te~evka~Aae~-~v~d~p~~~g~~ 149 (310)
.|+++++|+|+|+|++||++|||||+|||+|||++||||+|+|||+|.|+| +||+|||++|+++ +|.|. ++|+
T Consensus 2 ~~~~~~~wsf~G~~~~~D~asLqRG~qvy~evCa~CHsl~~v~yr~L~d~gg~~~te~evk~~a~~~~~v~d~--~~G~- 78 (258)
T 1zrt_D 2 SNVPDHAFSFEGIFGKYDQAQLRRGFQVYNEVCSACHGMKFVPIRTLADDGGPQLDPTFVREYAAGLDTIIDK--DSGE- 78 (258)
T ss_dssp CCSCSCCCSSSSSSCCCCHHHHHHHHHHHHHTTTTTCCCTTCBGGGSSSSSSCCCCHHHHHHHHHHSCCCCCS--SSCS-
T ss_pred CCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHhhcCCchhhhHHHHhhcCCCCCCHHHHHHHHHhhccccCC--cccc-
Confidence 389999999999999999999999999999999999999999999999888 9999999999999 99983 4888
Q ss_pred cCCCCCCCCCCCCCCChHHHHHHHcCCCC-CCCchhHHhhhc-----------------CChHHHHHHHhcCCCCCCCcc
Q 042592 150 FTRPGKLSDRFPQPYSNEQAARFANGGAY-PPDLSLITKARH-----------------DGQNYVFALLTGYRDPPAGVS 211 (310)
Q Consensus 150 f~rp~~~~D~~~sp~~n~~Aa~~An~Ga~-PPDLSliakaR~-----------------~G~dYIyslL~gy~dpP~g~~ 211 (310)
+|+++++|++|+ |||+. |||||||+|||+ +|+||||||||||.+||.+..
T Consensus 79 -~r~~~~~d~~p~-----------~~Ga~~PPDLSliaraR~g~~g~~~~~~~~~~~~~~G~dyIyslLtgy~~~p~~~~ 146 (258)
T 1zrt_D 79 -ERDRKETDMFPT-----------RVGDGMGPDLSVMAKARAGFSGPAGSGMNQLFKGMGGPEYIYNYVIGFEENPECAP 146 (258)
T ss_dssp -CCCCCTTSBCCC-----------CCSSSCCCCCTTTGGGCCCCCCSCCTTSCCCCCCCCSHHHHHHHHSCCCCCCTTCS
T ss_pred -ccCCCChhhhhh-----------hcCCCCCCCchHHHHHhcccccccccccchhcccCCcHHHHHHHHhcCCCCCcccc
Confidence 799999999994 79999 999999999996 699999999999988887775
Q ss_pred -cCCCCcCCCCC------------------CCCcccCccccccCcccccCCChhhHhhhHHHHHHHHhhhcCCcHHHHHH
Q 042592 212 -IREGLHYNPYF------------------PGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAAEPEMEERKL 272 (310)
Q Consensus 212 -~~~g~~yN~~f------------------pg~~iaMP~~L~d~~v~y~DGtpat~~Q~akDVvaFL~waAEP~~~~Rk~ 272 (310)
+++|+|||+|| ||+.|+||++|.+++|+|+||||+|++|+++|||+||+|+|||++++||+
T Consensus 147 g~~~g~~~N~~f~n~~mP~~l~~~qg~~~~~G~~iaM~~~L~~~~v~y~dgtpat~~q~a~DVv~FL~waaEP~~~~Rk~ 226 (258)
T 1zrt_D 147 EGIDGYYYNKTFQIGGVPDTCKDAAGVKITHGSWARMPPPLVDDQVTYEDGTPATVDQMAQDVSAFLMWAAEPKLVARKQ 226 (258)
T ss_dssp SCCSSCCCCSSCCSC--CCSCC---SSSCSSCCCCSCCCSCSSCSSCCTTCCCCCHHHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred cCCccccccccccCCCCCcchhcccCccCCCCcccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHcCccHHHHHH
Confidence 89999999997 79999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccce
Q 042592 273 MGFKWIFVLSLALLQAGYYRRLRWSVLKSRK 303 (310)
Q Consensus 273 ~G~~Vl~fL~il~~l~y~~Kr~~W~~vk~rk 303 (310)
||++||+||+||++|+|++||++|++||+||
T Consensus 227 ~G~~vl~fL~il~~l~y~~kr~~W~~vk~~~ 257 (258)
T 1zrt_D 227 MGLVAMVMLGLLSVMLYLTNKRLWAPYKGHK 257 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 9999999999999999999999999999987
No 6
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=98.53 E-value=3.2e-07 Score=75.46 Aligned_cols=24 Identities=29% Similarity=0.649 Sum_probs=19.9
Q ss_pred chHHHHhHHHHHH-Hhhcccccccc
Q 042592 91 DHASIRRGHQVYQ-QVCASCHSMSL 114 (310)
Q Consensus 91 D~aslqRG~qvy~-~vCaaCHSlk~ 114 (310)
..+++++|.++|. ..|++||+..-
T Consensus 45 ~~~~~~~G~~l~~~~~C~~CH~~~g 69 (146)
T 3o0r_C 45 MSAAVVRGKLVWEQNNCVGCHTLLG 69 (146)
T ss_dssp CCHHHHHHHHHHHHHTGGGTSEETT
T ss_pred CchHHHHHHHHHHhCCCcccCCCcC
Confidence 3568999999999 56999999753
No 7
>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM; 1.23A {Saccharomyces cerevisiae} SCOP: a.3.1.1 PDB: 1kyo_W* 3cx5_W* 2gb8_B* 2pcc_B* 2b12_B* 2jti_B* 2b11_B* 2b0z_B* 2bcn_B* 1u74_B* 2b10_B* 1yfc_A* 1yic_A* 1nmi_A* 2hv4_A* 2orl_A* 3tyi_A* 1crh_A* 2ycc_A* 1csw_A* ...
Probab=98.41 E-value=2.8e-07 Score=71.99 Aligned_cols=24 Identities=21% Similarity=0.672 Sum_probs=20.7
Q ss_pred chHHHHhHHHHHHHhhcccccccc
Q 042592 91 DHASIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 91 D~aslqRG~qvy~~vCaaCHSlk~ 114 (310)
..+.+.+|.++|.+.|++||+..-
T Consensus 4 ~~~~~~~G~~lf~~~C~~CH~~~g 27 (108)
T 1ycc_A 4 KAGSAKKGATLFKTRCLQCHTVEK 27 (108)
T ss_dssp CCCCHHHHHHHHHHHTTTTCCCST
T ss_pred ccccHHHHHHHHHhhCcccCCCCC
Confidence 445789999999999999999865
No 8
>2w9k_A Cytochrome C, cytochrome C555; electron transport, intermembrane space, metal-binding, thioether bond, respiratory chain, trypanosome; HET: M3L HEC; 1.55A {Crithidia fasciculata} PDB: 2yk3_A* 4dy9_A*
Probab=98.32 E-value=5.1e-07 Score=71.41 Aligned_cols=24 Identities=21% Similarity=0.516 Sum_probs=20.8
Q ss_pred chHHHHhHHHHHHHhhcccccccc
Q 042592 91 DHASIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 91 D~aslqRG~qvy~~vCaaCHSlk~ 114 (310)
+.+.+++|.++|.+.|++||+..-
T Consensus 10 ~~~~~~~G~~lf~~~C~~CH~~~g 33 (114)
T 2w9k_A 10 PPGDAARGEKLFKGRAAQCHTANQ 33 (114)
T ss_dssp CCCCHHHHHHHHHHHTTTTCCCST
T ss_pred CCccHHHHHHHHHhhchhhCCCCC
Confidence 446789999999999999999864
No 9
>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1
Probab=98.32 E-value=4.6e-07 Score=76.55 Aligned_cols=38 Identities=24% Similarity=0.456 Sum_probs=30.0
Q ss_pred CCCCCCCCCCCCCCcchHHHHhHHHHHHHhhccccccc
Q 042592 76 CPSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMS 113 (310)
Q Consensus 76 ~~~~~w~~~g~~~~~D~aslqRG~qvy~~vCaaCHSlk 113 (310)
+..++++..|..-.++.+++++|.++|.+.|++||+..
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~G~~lf~~~Ca~CHg~~ 70 (163)
T 1w5c_T 33 VLTVPLNSEGKTITLTEKQYLEGKRLFQYACASCHVGG 70 (163)
T ss_dssp HHEEESSTTSCEEECCHHHHHHHHHHHHHHTHHHHGGG
T ss_pred ceEEecCCCCCcccCCHHHHHHHHHHHHHhhHHhCCCC
Confidence 34455666665556889999999999999999999853
No 10
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=98.27 E-value=1.6e-06 Score=65.81 Aligned_cols=22 Identities=32% Similarity=0.709 Sum_probs=19.5
Q ss_pred hHHHHhHHHHHHHh-hccccccc
Q 042592 92 HASIRRGHQVYQQV-CASCHSMS 113 (310)
Q Consensus 92 ~aslqRG~qvy~~v-CaaCHSlk 113 (310)
.+.+.+|.++|.+. |++||+..
T Consensus 3 ~~~~~~G~~l~~~~~C~~CHg~~ 25 (99)
T 1w2l_A 3 MPLAELGARLYREKACFSCHSID 25 (99)
T ss_dssp CCHHHHHHHHHHHTSGGGTCCSS
T ss_pred cccHHHHHHHHhhCChhhcCCCC
Confidence 35789999999999 99999975
No 11
>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB: 1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A* 2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A* 1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ...
Probab=98.24 E-value=1.2e-06 Score=67.50 Aligned_cols=21 Identities=29% Similarity=0.808 Sum_probs=18.8
Q ss_pred HHHhHHHHHHHhhcccccccc
Q 042592 94 SIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 94 slqRG~qvy~~vCaaCHSlk~ 114 (310)
++++|.++|.+.|++||+..-
T Consensus 2 d~~~G~~lf~~~C~~CH~~~g 22 (103)
T 1i54_A 2 DVAKGKKTFVQKCAQCHTVEN 22 (103)
T ss_dssp CHHHHHHHHHHHTTTTCCCST
T ss_pred cHHHHHHHHHHhhHHhCCCCC
Confidence 478999999999999999875
No 12
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=98.21 E-value=2.2e-06 Score=64.55 Aligned_cols=24 Identities=29% Similarity=0.607 Sum_probs=21.5
Q ss_pred cchHHHHhHHHHHHHhhccccccc
Q 042592 90 YDHASIRRGHQVYQQVCASCHSMS 113 (310)
Q Consensus 90 ~D~aslqRG~qvy~~vCaaCHSlk 113 (310)
+|.+.+.+|.++|.+.|++||+..
T Consensus 1 ~~~~~~~~G~~l~~~~C~~CHg~~ 24 (91)
T 1ls9_A 1 VDAELLADGKKVFAGNCAACHLGG 24 (91)
T ss_dssp CCHHHHHHHHHHHHHHTHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHhHHhCCCC
Confidence 478899999999999999999953
No 13
>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus}
Probab=98.16 E-value=3.1e-06 Score=69.18 Aligned_cols=23 Identities=17% Similarity=0.528 Sum_probs=19.7
Q ss_pred hHHHHhHHHHHH----Hhhcccccccc
Q 042592 92 HASIRRGHQVYQ----QVCASCHSMSL 114 (310)
Q Consensus 92 ~aslqRG~qvy~----~vCaaCHSlk~ 114 (310)
.+.+.||.++|. ..|++||+..-
T Consensus 23 ~~~~~~G~~lf~~~~~~~C~~CH~~~g 49 (137)
T 2c1d_B 23 PGNPEEGVRIMTTNALGNCVACHQIGA 49 (137)
T ss_dssp CCCHHHHHHHHTCTTTTCGGGTBCCTT
T ss_pred CCCHHHHHHHHhcccccChhhhcCCCC
Confidence 456899999998 89999999754
No 14
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=98.14 E-value=1.2e-06 Score=67.87 Aligned_cols=21 Identities=33% Similarity=0.841 Sum_probs=16.5
Q ss_pred HHHhHHHHHHHhhcccccccc
Q 042592 94 SIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 94 slqRG~qvy~~vCaaCHSlk~ 114 (310)
++++|.++|.+.|++||+..-
T Consensus 2 d~~~G~~lf~~~C~~CH~~~g 22 (110)
T 2l4d_A 2 SFTSGEQIFRTRCSSCHTVGN 22 (110)
T ss_dssp ---CHHHHHHHHTTTTCCSSC
T ss_pred CHHHHHHHHHHhhHHhcCCCC
Confidence 578999999999999999754
No 15
>3mk7_B Cytochrome C oxidase, CBB3-type, subunit O; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=98.12 E-value=1.8e-05 Score=71.36 Aligned_cols=71 Identities=21% Similarity=0.362 Sum_probs=44.4
Q ss_pred CCCCCCCchhHHhhhcCChHHHHHHHhcCCCCCCCcccCCCCcCCCCCCCCcccCcccc--ccCccc-------------
Q 042592 175 GGAYPPDLSLITKARHDGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKML--IDGALE------------- 239 (310)
Q Consensus 175 ~Ga~PPDLSliakaR~~G~dYIyslL~gy~dpP~g~~~~~g~~yN~~fpg~~iaMP~~L--~d~~v~------------- 239 (310)
.|.+.|||+.+.. |. ..+|++..|. || .. +.|| ..||..= .+..++
T Consensus 102 sgr~GPDLt~vG~-R~-s~~wl~~~I~---dP-q~-----------v~PG--S~MPay~~L~~~~~~~~~~~~~~~~l~~ 162 (203)
T 3mk7_B 102 SKRTGPDLARVGG-RY-SDDWHRAHLY---NP-RN-----------VVPE--SKMPSYPWLVENTLDGKDTAKKMSALRM 162 (203)
T ss_dssp SBCSSCCCTTCTT-TS-CHHHHHHHHH---CH-HH-----------HSTT--CCCCCCTHHHHCBCCCTTHHHHHHHHHH
T ss_pred CCCCCcChhhhhc-cC-CHHHHHHHHh---Cc-cc-----------cCCC--CCCCCCccccccccchHHHHHHHHHHHh
Confidence 3678999999974 42 6799888877 53 22 3477 6788763 333322
Q ss_pred ----ccC----CChhhH--hhhHHHHHHHHhhhcC
Q 042592 240 ----YED----GTPATE--AQMGKDVVTFLSWAAE 264 (310)
Q Consensus 240 ----y~D----Gtpat~--~Q~akDVvaFL~waAE 264 (310)
|.| +..+.+ .+.+.|||+||.-.+.
T Consensus 163 ~gvpy~~~~i~~a~~~~~~~~e~~alvAYLq~Lg~ 197 (203)
T 3mk7_B 163 LGVPYTEEDIAGARDSVNGKTEMDAMVAYLQVLGT 197 (203)
T ss_dssp TTCCCCHHHHTTSHHHHTTCBHHHHHHHHHTTTTT
T ss_pred cCCCCCHHHHHhHHHHhcchhHHHHHHHHHHHhCc
Confidence 321 122223 3778999999986654
No 16
>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1
Probab=98.11 E-value=5.7e-06 Score=65.98 Aligned_cols=36 Identities=28% Similarity=0.702 Sum_probs=29.2
Q ss_pred CCCCCCCCCCCCCcchHHHHhHHHHHHHhhcccccc
Q 042592 77 PSYPWPHKGILSSYDHASIRRGHQVYQQVCASCHSM 112 (310)
Q Consensus 77 ~~~~w~~~g~~~~~D~aslqRG~qvy~~vCaaCHSl 112 (310)
-..+++..|..-.++.+.+.+|.++|.+.|++||+.
T Consensus 6 ~~~~l~~~g~~~~~~~~~~~~G~~lf~~~Ca~CHg~ 41 (129)
T 1f1c_A 6 RTFPINAQGDTAVLSLKEIKKGQQVFNAACAQCHAL 41 (129)
T ss_dssp TEEECSTTCCEEECCHHHHHHHHHHHHHHTHHHHGG
T ss_pred eeeecccccceeccCcccHHHHHHHHHhhhHHhcCC
Confidence 344555556556788999999999999999999995
No 17
>1co6_A Protein (cytochrome C2); electron transport(heme protein); HET: HEM; 1.60A {Blastochloris viridis} SCOP: a.3.1.1 PDB: 1cry_A* 1io3_A*
Probab=98.09 E-value=3.1e-06 Score=66.18 Aligned_cols=20 Identities=40% Similarity=0.848 Sum_probs=17.6
Q ss_pred HHHhHHHHHHHhhcccccccc
Q 042592 94 SIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 94 slqRG~qvy~~vCaaCHSlk~ 114 (310)
++.+|.++|.+ |++||+..-
T Consensus 2 d~~~G~~lf~~-C~~CH~~~g 21 (107)
T 1co6_A 2 DAASGEQVFKQ-CLVCHSIGP 21 (107)
T ss_dssp CHHHHHHHHHH-HHTTCCCST
T ss_pred CHHHHHHHHHH-hHhhCCCCC
Confidence 46899999999 999999865
No 18
>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A {Oryza sativa} SCOP: a.3.1.1
Probab=98.09 E-value=3.6e-06 Score=66.14 Aligned_cols=22 Identities=23% Similarity=0.765 Sum_probs=19.6
Q ss_pred HHHHhHHHHHHHhhcccccccc
Q 042592 93 ASIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 93 aslqRG~qvy~~vCaaCHSlk~ 114 (310)
+.+++|.++|.+.|++||+..-
T Consensus 10 ~~~~~G~~lf~~~C~~CHg~~g 31 (112)
T 1ccr_A 10 GNPKAGEKIFKTKCAQCHTVDK 31 (112)
T ss_dssp CCHHHHHHHHHHHTTTTCCCST
T ss_pred ccHHHHHHHHHhhcHHhCCCCC
Confidence 4679999999999999999865
No 19
>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B*
Probab=98.08 E-value=4.9e-06 Score=67.97 Aligned_cols=23 Identities=17% Similarity=0.501 Sum_probs=19.7
Q ss_pred hHHHHhHHHHHHH----hhcccccccc
Q 042592 92 HASIRRGHQVYQQ----VCASCHSMSL 114 (310)
Q Consensus 92 ~aslqRG~qvy~~----vCaaCHSlk~ 114 (310)
.+.+.+|.++|.+ .|++||+..-
T Consensus 24 ~~~~~~G~~lf~~~~~~~C~~CH~~~g 50 (138)
T 1h32_B 24 PGDPVEGRRLMTDRSVGNCIACHEVTE 50 (138)
T ss_dssp CCCHHHHHHHHHCTTTTCGGGTCCCTT
T ss_pred CCCHHHHHHHHhhccCCChhhccCCCC
Confidence 4678999999997 8999999754
No 20
>1hro_A Cytochrome C2; electron transport, photosynthesis, heme; HET: HEM; 2.20A {Rhodopila globiformis} SCOP: a.3.1.1
Probab=98.06 E-value=2.4e-06 Score=66.49 Aligned_cols=22 Identities=18% Similarity=0.617 Sum_probs=19.8
Q ss_pred HHHHhHHHHHHHhhcccccccc
Q 042592 93 ASIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 93 aslqRG~qvy~~vCaaCHSlk~ 114 (310)
+.+.+|.++|.+.|++||+...
T Consensus 6 ~~~~~G~~lf~~~C~~CH~~~g 27 (106)
T 1hro_A 6 GDPVEGKHLFHTICITCHTDIK 27 (106)
T ss_dssp CCHHHHHHHHTTTGGGTCCSST
T ss_pred ccHHHHHHHHHcchhhhCCCCC
Confidence 4689999999999999999875
No 21
>1jdl_A C552, cytochrome C2, ISO-2; alpha helix, electron transport; HET: HEM; 1.70A {Rhodospirillum centenum} SCOP: a.3.1.1
Probab=98.05 E-value=1.9e-06 Score=68.59 Aligned_cols=20 Identities=25% Similarity=0.733 Sum_probs=17.6
Q ss_pred HHHhHHHHHHHhhcccccccc
Q 042592 94 SIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 94 slqRG~qvy~~vCaaCHSlk~ 114 (310)
.+.+|.++| +.|++||++.-
T Consensus 4 d~~~G~~lf-~~C~~CH~~~~ 23 (121)
T 1jdl_A 4 DPAKGEAVF-KKCMACHRVGP 23 (121)
T ss_dssp CHHHHHHHG-GGTTTTCCCST
T ss_pred CHHHHHHHH-hhhhhhCCCCC
Confidence 578999999 79999999864
No 22
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=98.04 E-value=7.6e-06 Score=60.31 Aligned_cols=17 Identities=41% Similarity=0.962 Sum_probs=15.2
Q ss_pred hHHHHHHH-hhccccccc
Q 042592 97 RGHQVYQQ-VCASCHSMS 113 (310)
Q Consensus 97 RG~qvy~~-vCaaCHSlk 113 (310)
+|.++|.+ .|++||+..
T Consensus 2 ~G~~l~~~~~C~~CHg~~ 19 (87)
T 2zxy_A 2 DGKAIFQQKGCGSCHQAN 19 (87)
T ss_dssp CHHHHHHHTTGGGTCCSS
T ss_pred ChHHHHhcCCchhhcCCC
Confidence 79999998 899999964
No 23
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=97.98 E-value=1e-05 Score=59.36 Aligned_cols=19 Identities=32% Similarity=0.882 Sum_probs=16.2
Q ss_pred HhHHHHHHH-hhcccccccc
Q 042592 96 RRGHQVYQQ-VCASCHSMSL 114 (310)
Q Consensus 96 qRG~qvy~~-vCaaCHSlk~ 114 (310)
|+|.++|.+ .|++||+..-
T Consensus 1 ~~G~~l~~~~~C~~CHg~~g 20 (82)
T 1cch_A 1 QDGEALFKSKPCAACHSVDT 20 (82)
T ss_dssp CCSHHHHHHSTHHHHSCSSS
T ss_pred CcHHHHHHhCCChhhcCCCC
Confidence 589999997 7999999653
No 24
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*
Probab=97.92 E-value=1.6e-05 Score=64.76 Aligned_cols=26 Identities=27% Similarity=0.560 Sum_probs=22.9
Q ss_pred CCcchHHHHhHHHHHHHhhccccccc
Q 042592 88 SSYDHASIRRGHQVYQQVCASCHSMS 113 (310)
Q Consensus 88 ~~~D~aslqRG~qvy~~vCaaCHSlk 113 (310)
-.++.+++++|.++|.+.|++||+..
T Consensus 19 ~~~~~~~~~~G~~ly~~~Ca~CHg~~ 44 (137)
T 1mz4_A 19 ITLTEKQYLEGKRLFQYACASCHVGG 44 (137)
T ss_dssp EECCHHHHHHHHHHHHHHTHHHHGGG
T ss_pred ccCChHHHHHHHHHHHhhhHHhcCCC
Confidence 34688999999999999999999964
No 25
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}
Probab=97.92 E-value=2.8e-05 Score=61.67 Aligned_cols=26 Identities=27% Similarity=0.719 Sum_probs=22.8
Q ss_pred CCcchHHHHhHHHHHHHhhccccccc
Q 042592 88 SSYDHASIRRGHQVYQQVCASCHSMS 113 (310)
Q Consensus 88 ~~~D~aslqRG~qvy~~vCaaCHSlk 113 (310)
+..+.+.+++|.++|.+.|++||+..
T Consensus 27 ~~~~~~~~~~G~~l~~~~C~~CH~~~ 52 (124)
T 3cp5_A 27 EQIDAALAQQGEQLFNTYCTACHRLD 52 (124)
T ss_dssp SSCCHHHHHHHHHHHHHHTTTTCCSS
T ss_pred ccCChHHHHHHHHHHHHhhHHhCCCC
Confidence 35688999999999999999999963
No 26
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=97.91 E-value=1.1e-05 Score=60.36 Aligned_cols=20 Identities=35% Similarity=0.717 Sum_probs=17.8
Q ss_pred HHHhHHHHHHHhhccccccc
Q 042592 94 SIRRGHQVYQQVCASCHSMS 113 (310)
Q Consensus 94 slqRG~qvy~~vCaaCHSlk 113 (310)
++.+|.++|.+.|++||+..
T Consensus 2 ~~~~G~~l~~~~C~~CHg~~ 21 (90)
T 1cyi_A 2 DLALGAQVFNGNCAACHMGG 21 (90)
T ss_dssp CHHHHHHHHHHHTHHHHGGG
T ss_pred cHHHHHHHHHHHHHHhCCCC
Confidence 47899999999999999863
No 27
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=97.90 E-value=1.1e-05 Score=58.59 Aligned_cols=18 Identities=44% Similarity=0.707 Sum_probs=15.8
Q ss_pred hHHHHHHHhhcccccccc
Q 042592 97 RGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 97 RG~qvy~~vCaaCHSlk~ 114 (310)
+|.++|.+.|++||+..-
T Consensus 2 ~G~~l~~~~C~~CHg~~g 19 (71)
T 1c75_A 2 DAEAVVQQKCISCHGGDL 19 (71)
T ss_dssp CHHHHHHHHTHHHHCTTS
T ss_pred cHHHHHHHHHHHHcCCCC
Confidence 699999999999999643
No 28
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=97.88 E-value=1.4e-05 Score=59.62 Aligned_cols=21 Identities=33% Similarity=0.757 Sum_probs=18.3
Q ss_pred HHHHhHHHHHHHhhccccccc
Q 042592 93 ASIRRGHQVYQQVCASCHSMS 113 (310)
Q Consensus 93 aslqRG~qvy~~vCaaCHSlk 113 (310)
+++.+|.++|.+.|++||+..
T Consensus 2 ~~~~~G~~l~~~~C~~CHg~~ 22 (89)
T 1c6r_A 2 ADLALGKQTFEANCAACHAGG 22 (89)
T ss_dssp CCHHHHHHHHHHHTHHHHGGG
T ss_pred ccHHHHHHHHHHHHHHHcCCC
Confidence 357899999999999999963
No 29
>1qn2_A Cytochrome CH; electron transport; HET: HEC; 2.01A {Methylobacterium extorquens} SCOP: a.3.1.1
Probab=97.86 E-value=9.9e-06 Score=62.51 Aligned_cols=19 Identities=21% Similarity=0.775 Sum_probs=16.9
Q ss_pred HHHhHHHHHHHhhccccccc
Q 042592 94 SIRRGHQVYQQVCASCHSMS 113 (310)
Q Consensus 94 slqRG~qvy~~vCaaCHSlk 113 (310)
.+.+|.++|.+ |++||+..
T Consensus 3 d~~~G~~l~~~-C~~CH~~~ 21 (100)
T 1qn2_A 3 DAAAGEKAFAP-CKACHNFE 21 (100)
T ss_dssp CHHHHHHHTGG-GGGTCCSS
T ss_pred cHHHHHHHHHH-HHHhcCCC
Confidence 57899999975 99999987
No 30
>155c_A Cytochrome C550; electron transport; HET: HEM; 2.50A {Paracoccus denitrificans} SCOP: a.3.1.1
Probab=97.84 E-value=9.5e-06 Score=67.78 Aligned_cols=20 Identities=20% Similarity=0.758 Sum_probs=17.7
Q ss_pred HHHhHHHHHHHhhcccccccc
Q 042592 94 SIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 94 slqRG~qvy~~vCaaCHSlk~ 114 (310)
.+.+|.++|++ |++||++.-
T Consensus 5 d~~~G~~lF~~-CaaCH~~~~ 24 (135)
T 155c_A 5 DAAKGEKEFNK-CKACHMIQA 24 (135)
T ss_dssp CSHHHHHHHTT-TTTTEECCC
T ss_pred CHHHHHHHHHH-HHHhcCCCC
Confidence 46899999998 999999875
No 31
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=97.80 E-value=6.7e-06 Score=61.79 Aligned_cols=20 Identities=35% Similarity=0.650 Sum_probs=17.5
Q ss_pred HHHhHHHHHHHhhcccccccc
Q 042592 94 SIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 94 slqRG~qvy~~vCaaCHSlk~ 114 (310)
++.+|.++|. .|++||+..-
T Consensus 3 ~~~~G~~ly~-~C~~CHg~~g 22 (87)
T 1cno_A 3 DIEAGKAKAA-VCAACHGQNG 22 (87)
T ss_dssp CHHHHHHHGG-GTHHHHCTTS
T ss_pred cHHHHHHHHH-HHHhhcCCCC
Confidence 4789999999 9999999654
No 32
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=97.80 E-value=2.1e-05 Score=57.98 Aligned_cols=20 Identities=35% Similarity=0.810 Sum_probs=17.9
Q ss_pred HHHHhHHHHHHHhhcccccc
Q 042592 93 ASIRRGHQVYQQVCASCHSM 112 (310)
Q Consensus 93 aslqRG~qvy~~vCaaCHSl 112 (310)
+++++|.++|.+.|++||+.
T Consensus 2 ~~~~~G~~l~~~~C~~CHg~ 21 (86)
T 3ph2_B 2 ADLATGAKVFSANCAACHAG 21 (86)
T ss_dssp CCHHHHHHHHHHHTHHHHCS
T ss_pred ccHHHHHHHHHHHhHHhCCC
Confidence 35799999999999999984
No 33
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=97.79 E-value=2.6e-05 Score=57.93 Aligned_cols=20 Identities=35% Similarity=0.723 Sum_probs=17.9
Q ss_pred HHHhHHHHHHHhhccccccc
Q 042592 94 SIRRGHQVYQQVCASCHSMS 113 (310)
Q Consensus 94 slqRG~qvy~~vCaaCHSlk 113 (310)
++++|.++|.+.|++||+..
T Consensus 2 d~~~G~~l~~~~C~~CHg~~ 21 (93)
T 3dr0_A 2 DAAAGAQVFAANCAACHAGG 21 (93)
T ss_dssp CHHHHHHHHHHHTHHHHGGG
T ss_pred cHHHHHHHHHHHhHHhcCCC
Confidence 57899999999999999854
No 34
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=97.79 E-value=4.5e-05 Score=56.06 Aligned_cols=18 Identities=17% Similarity=0.543 Sum_probs=15.4
Q ss_pred hHHHHHH-Hhhcccccccc
Q 042592 97 RGHQVYQ-QVCASCHSMSL 114 (310)
Q Consensus 97 RG~qvy~-~vCaaCHSlk~ 114 (310)
+|.++|. +.|++||+..-
T Consensus 2 ~G~~l~~~~~C~~CHg~~g 20 (82)
T 2exv_A 2 DPEVLAKNKGCVACHAIDT 20 (82)
T ss_dssp CHHHHHHHTTGGGTCCSSS
T ss_pred cHHHHHHhCCchhhcCCCC
Confidence 7999998 68999999643
No 35
>1c2n_A Cytochrome C2; electron transport; HET: HEC; NMR {Rhodobacter capsulatus} SCOP: a.3.1.1
Probab=97.73 E-value=1.4e-05 Score=66.14 Aligned_cols=19 Identities=26% Similarity=0.768 Sum_probs=17.0
Q ss_pred HHhHHHHHHHhhcccccccc
Q 042592 95 IRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 95 lqRG~qvy~~vCaaCHSlk~ 114 (310)
+.+|.++|+ .|++||+...
T Consensus 24 ~~~G~~lf~-~C~~CH~~~~ 42 (137)
T 1c2n_A 24 AAKGEKEFN-KCKTCHSIIA 42 (137)
T ss_dssp HHHHHHHHH-HHTTTCCBCC
T ss_pred hHHHHHHHH-hHHhhCCCCC
Confidence 689999999 8999999874
No 36
>3m97_X Cytochrome C-552, cytochrome C552; electron transport chain (cytochrome), electron transfer, P. denitrificans, electron donor; HET: HEC; 1.33A {Paracoccus denitrificans} PDB: 1c7m_A* 1i6d_A* 1i6e_A* 1ql3_A* 1ql4_A*
Probab=97.73 E-value=2e-05 Score=66.75 Aligned_cols=21 Identities=29% Similarity=0.722 Sum_probs=18.1
Q ss_pred chHHHHhHHHHHHHhhcccccc
Q 042592 91 DHASIRRGHQVYQQVCASCHSM 112 (310)
Q Consensus 91 D~aslqRG~qvy~~vCaaCHSl 112 (310)
..+++.||.++| +.|++||+.
T Consensus 40 ~~~d~~~G~~lf-~~C~~CH~~ 60 (140)
T 3m97_X 40 ASADPAAGEKVF-GKCKACHKL 60 (140)
T ss_dssp HTCCHHHHHHHG-GGTTTTCCS
T ss_pred cccCHHHHHHHH-HhhhhhcCC
Confidence 345679999999 799999998
No 37
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=97.70 E-value=4e-05 Score=56.63 Aligned_cols=17 Identities=29% Similarity=0.821 Sum_probs=15.0
Q ss_pred hHHHHHHHhhcccccccc
Q 042592 97 RGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 97 RG~qvy~~vCaaCHSlk~ 114 (310)
+|.++|.+ |++||+..-
T Consensus 2 ~G~~ly~~-Ca~CHg~~g 18 (79)
T 1c53_A 2 DGAALYKS-CVGCHGADG 18 (79)
T ss_pred cHHHHHHH-HHhccCCCC
Confidence 79999998 999999654
No 38
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Probab=97.66 E-value=2.2e-05 Score=59.92 Aligned_cols=22 Identities=36% Similarity=0.723 Sum_probs=19.7
Q ss_pred HhHHHHHHHhhcccccccccch
Q 042592 96 RRGHQVYQQVCASCHSMSLISY 117 (310)
Q Consensus 96 qRG~qvy~~vCaaCHSlk~v~y 117 (310)
.+|.++|.++|++||++.++.+
T Consensus 19 ~~G~~l~~~~C~~CH~~~~i~~ 40 (81)
T 2blf_B 19 QPGFEAAQNNCAACHSVDYINT 40 (81)
T ss_dssp STHHHHHHHHTTSSSCTHHHHT
T ss_pred cchHHHHHHHHHHhcCCccccc
Confidence 6899999999999999987655
No 39
>1i8o_A Cytochrome C2; electron transport, heme, ammonia, oxidized; HET: HEC; 1.15A {Rhodopseudomonas palustris} SCOP: a.3.1.1 PDB: 1fj0_A* 1hh7_A* 1i8p_A*
Probab=97.59 E-value=3.4e-05 Score=61.44 Aligned_cols=17 Identities=29% Similarity=0.915 Sum_probs=15.1
Q ss_pred HHHhHHHHHHHhhccccc
Q 042592 94 SIRRGHQVYQQVCASCHS 111 (310)
Q Consensus 94 slqRG~qvy~~vCaaCHS 111 (310)
.+.+|.++|+ .|++||+
T Consensus 2 d~~~G~~lf~-~C~~CH~ 18 (114)
T 1i8o_A 2 DAKAGEAVFK-QCMTCHR 18 (114)
T ss_dssp CHHHHHHHHH-HHTTTCC
T ss_pred cHHHHHHHHH-hHHhhCC
Confidence 3679999996 8999999
No 40
>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue copper protein, oxidoreductase, electron transport; HET: TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1 PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D*
Probab=97.55 E-value=6.3e-05 Score=62.32 Aligned_cols=24 Identities=21% Similarity=0.600 Sum_probs=20.6
Q ss_pred chHHHHhHHHHHHHhhcccccccc
Q 042592 91 DHASIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 91 D~aslqRG~qvy~~vCaaCHSlk~ 114 (310)
|.+.+.+|.++|.+.|++||+..-
T Consensus 42 ~~~~~~~G~~l~~~~Ca~CHg~~g 65 (147)
T 2gc4_D 42 DPEILPEAEELYAGMCSGCHGHYA 65 (147)
T ss_dssp CTTTHHHHHHHHHHHTHHHHCTTS
T ss_pred CHHHHHHHHHHHHhhcHHhCCCCC
Confidence 456789999999999999999654
No 41
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=97.54 E-value=2.1e-05 Score=60.53 Aligned_cols=20 Identities=30% Similarity=0.562 Sum_probs=17.2
Q ss_pred HHHhHHHHHHHhhcccccccc
Q 042592 94 SIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 94 slqRG~qvy~~vCaaCHSlk~ 114 (310)
++++|.++|. .|++||+..-
T Consensus 23 ~~~~G~~l~~-~C~~CHg~~g 42 (103)
T 2zzs_A 23 DAAAGQAKAA-VCAACHGADG 42 (103)
T ss_dssp CHHHHHHHTT-TTHHHHCTTS
T ss_pred CHHHHHHHHH-HHHhhcCCCC
Confidence 4689999999 8999998654
No 42
>3c2c_A Cytochrome C2; electron transport protein (cytochrome); HET: HEM; 1.68A {Rhodospirillum rubrum} SCOP: a.3.1.1 PDB: 2c2c_A*
Probab=97.44 E-value=4.9e-05 Score=59.84 Aligned_cols=20 Identities=25% Similarity=0.654 Sum_probs=17.6
Q ss_pred HHHhHHHHHHHhhcccccccc
Q 042592 94 SIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 94 slqRG~qvy~~vCaaCHSlk~ 114 (310)
.+.+|.++|+ .|++||+..-
T Consensus 3 d~~~G~~lf~-~Ca~CH~~~g 22 (112)
T 3c2c_A 3 DAAAGEKVSK-KCLACHTFDQ 22 (112)
T ss_dssp CHHHHHHHGG-GGTTTCCCST
T ss_pred cHHHHHHHHH-hHHhhCCCCC
Confidence 4689999998 8999999874
No 43
>1vyd_A Cytochrome C2; electron transport, redox, mutant; HET: HEM; 2.3A {Rhodobacter capsulatus} SCOP: a.3.1.1 PDB: 1c2r_A*
Probab=97.43 E-value=2.7e-05 Score=63.40 Aligned_cols=20 Identities=25% Similarity=0.738 Sum_probs=17.2
Q ss_pred HHHhHHHHHHHhhcccccccc
Q 042592 94 SIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 94 slqRG~qvy~~vCaaCHSlk~ 114 (310)
...||.++|+ .|++||++.-
T Consensus 2 d~~~G~~~F~-~C~~CH~v~~ 21 (116)
T 1vyd_A 2 DAAKGEKEFN-KCKTCHSIIA 21 (116)
T ss_dssp CHHHHHHHGG-GTTTTCCEEC
T ss_pred CHHHHHHHHH-cchhhCCCCC
Confidence 3689999998 6999999874
No 44
>2d0w_A Cytochrome CL; electron transfer, electron transport; HET: HEM; 1.98A {Hyphomicrobium denitrificans}
Probab=97.42 E-value=0.00013 Score=62.26 Aligned_cols=24 Identities=21% Similarity=0.606 Sum_probs=21.2
Q ss_pred chHHHHhHHHHHHHhhcccccccc
Q 042592 91 DHASIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 91 D~aslqRG~qvy~~vCaaCHSlk~ 114 (310)
|.+.+++|.++|.+.|++||+...
T Consensus 44 ~~~~~~~G~~lf~~~Ca~CHg~~g 67 (170)
T 2d0w_A 44 VAGCLPKGEEIYLESCSGCHGHIG 67 (170)
T ss_dssp CGGGHHHHHHHHHHHTHHHHCTTS
T ss_pred CHHHHHHHHHHHHhhhHHhCCCCC
Confidence 567899999999999999999754
No 45
>2c8s_A Cytochrome C-L; HAEM, heme, electron transport, metal-binding; HET: HEM; 1.6A {Methylobacterium extorquens} SCOP: a.3.1.1
Probab=97.41 E-value=0.00032 Score=60.25 Aligned_cols=24 Identities=25% Similarity=0.743 Sum_probs=21.6
Q ss_pred chHHHHhHHHHHHHhhcccccccc
Q 042592 91 DHASIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 91 D~aslqRG~qvy~~vCaaCHSlk~ 114 (310)
|.+.+.+|.++|.+.|++||+..-
T Consensus 50 ~~~~~~~G~~lf~~~Ca~CHg~~g 73 (172)
T 2c8s_A 50 DKSCLRNGESLFATSCSGCHGHLA 73 (172)
T ss_dssp CHHHHHHHHHHHHHHTHHHHCTTS
T ss_pred CHHHHHHHHHHHHhhhHHhCCCCC
Confidence 678899999999999999999754
No 46
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=97.36 E-value=0.00041 Score=50.81 Aligned_cols=17 Identities=18% Similarity=0.608 Sum_probs=13.5
Q ss_pred HHHHHH-Hhhcccccccc
Q 042592 98 GHQVYQ-QVCASCHSMSL 114 (310)
Q Consensus 98 G~qvy~-~vCaaCHSlk~ 114 (310)
|.++|. +.|++||+..-
T Consensus 1 ~~~l~~~~~C~~CHg~~g 18 (79)
T 2d0s_A 1 DEALAKAKGCMACHAIDK 18 (79)
T ss_dssp CHHHHHHTTGGGTCCSSS
T ss_pred CHhHHhcCCChhhcCCCC
Confidence 568996 58999999643
No 47
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=97.26 E-value=0.00035 Score=68.85 Aligned_cols=26 Identities=27% Similarity=0.597 Sum_probs=22.8
Q ss_pred CcchHHHHhHHHHHHHhhcccccccc
Q 042592 89 SYDHASIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 89 ~~D~aslqRG~qvy~~vCaaCHSlk~ 114 (310)
..+.+.+++|.++|.+.|++||+..-
T Consensus 30 ~~~~~~~~~G~~l~~~~Ca~CHg~~g 55 (543)
T 1nir_A 30 DMSESEFNEAKQIYFQRCAGCHGVLR 55 (543)
T ss_dssp CCCHHHHHHHHHHHHHHTHHHHTTTT
T ss_pred CCChhHHHHHHHHHhhhhHhhCCCCC
Confidence 45788999999999999999999643
No 48
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=97.22 E-value=0.00046 Score=50.79 Aligned_cols=17 Identities=18% Similarity=0.585 Sum_probs=13.7
Q ss_pred HHHHHH-Hhhcccccccc
Q 042592 98 GHQVYQ-QVCASCHSMSL 114 (310)
Q Consensus 98 G~qvy~-~vCaaCHSlk~ 114 (310)
|.++|. +.|++||+..-
T Consensus 1 ~~~l~~~~~C~~CHg~~g 18 (81)
T 1a56_A 1 DADLAKKNNCIACHQVET 18 (81)
T ss_dssp CHHHHHHHSHHHHBCSSC
T ss_pred CHhHHhccCchhhCCCCC
Confidence 468897 79999999644
No 49
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=97.13 E-value=0.00013 Score=54.22 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=28.7
Q ss_pred HHHhHHHHHHHhhcccccccccchhhcccCCCCHHHHHHH
Q 042592 94 SIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEDETKAM 133 (310)
Q Consensus 94 slqRG~qvy~~vCaaCHSlk~v~yr~L~~~g~te~evka~ 133 (310)
++.+|.++|.+.|++||+..--..-+|.+.+++++++...
T Consensus 3 ~~~~G~~l~~~~C~~CHg~~gg~~P~L~~~~~~~~~l~~~ 42 (80)
T 1wve_C 3 QWGSGKNLYDKVCGHCHKPEVGVGPVLEGRGLPEAYIKDI 42 (80)
T ss_dssp CSSSHHHHHHHTTHHHHSTTTCSSCCCTTSCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHH
Confidence 4679999999999999997633344454445677776654
No 50
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=97.05 E-value=0.0011 Score=66.53 Aligned_cols=26 Identities=23% Similarity=0.581 Sum_probs=22.7
Q ss_pred CcchHHHHhHHHHHHHhhcccccccc
Q 042592 89 SYDHASIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 89 ~~D~aslqRG~qvy~~vCaaCHSlk~ 114 (310)
..+.+.+.+|.++|.+.|++||+..-
T Consensus 48 ~~~~~~~~~G~~ly~~~Ca~CHg~~g 73 (567)
T 1qks_A 48 ALSDAQYNEANKIYFERCAGCHGVLR 73 (567)
T ss_dssp CCCHHHHHHHHHHHHHHTHHHHCTTS
T ss_pred CCCHHHHHHHHHHHhhhhHhhCCCCC
Confidence 35788999999999999999999743
No 51
>3a9f_A Cytochrome C; alpha helix, mono heme, electron transport; HET: HEC P33 PGE PG4; 1.30A {Chlorobaculum tepidum}
Probab=97.01 E-value=0.00062 Score=54.02 Aligned_cols=22 Identities=14% Similarity=0.554 Sum_probs=19.8
Q ss_pred HHhHHHHHHHhhcccccccccc
Q 042592 95 IRRGHQVYQQVCASCHSMSLIS 116 (310)
Q Consensus 95 lqRG~qvy~~vCaaCHSlk~v~ 116 (310)
.+.|.++|.+.|.+|||..++.
T Consensus 27 ~~~g~~l~~~kC~~CHs~d~v~ 48 (92)
T 3a9f_A 27 FDAAKKLVDVRCNKCHTLDSVA 48 (92)
T ss_dssp HHHHHHHHHHHSSSSSCSGGGH
T ss_pred hHhHHHHHHhHHHHhcCCcccc
Confidence 4789999999999999999863
No 52
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=97.00 E-value=0.00056 Score=63.77 Aligned_cols=24 Identities=21% Similarity=0.678 Sum_probs=20.9
Q ss_pred chHHHHhHHHHHHHhhcccccccc
Q 042592 91 DHASIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 91 D~aslqRG~qvy~~vCaaCHSlk~ 114 (310)
|.+.+++|.++|.+.|++||+..-
T Consensus 128 ~~~~~~~G~~lf~~~Ca~CHg~~g 151 (311)
T 3mk7_C 128 DPQAVKMGARLFANYCSICHGSDA 151 (311)
T ss_dssp CHHHHHHHHHHHHHHTHHHHCTTS
T ss_pred CHHHHHHHHHHHhhhHHHhCCCCC
Confidence 566789999999999999998654
No 53
>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*
Probab=96.98 E-value=0.00019 Score=58.26 Aligned_cols=17 Identities=41% Similarity=0.938 Sum_probs=15.3
Q ss_pred hHHHHHHHhhcccccccc
Q 042592 97 RGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 97 RG~qvy~~vCaaCHSlk~ 114 (310)
+|.++|.+ |++||+..-
T Consensus 3 ~G~~ly~~-Ca~CHg~~g 19 (131)
T 1c52_A 3 DGAKIYAQ-CAGCHQQNG 19 (131)
T ss_dssp CHHHHTHH-HHHHHCTTS
T ss_pred cHHHHHHH-HHHhcCCCC
Confidence 79999999 999999754
No 54
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=96.97 E-value=0.00017 Score=52.87 Aligned_cols=21 Identities=29% Similarity=0.724 Sum_probs=18.7
Q ss_pred HHHhHHHHHHHhhcccccccc
Q 042592 94 SIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 94 slqRG~qvy~~vCaaCHSlk~ 114 (310)
++++|.++|.++|++||+..-
T Consensus 2 ~~~~G~~l~~~~C~~CHg~~g 22 (85)
T 1gdv_A 2 DLDNGEKVFSANCAACHAGGN 22 (85)
T ss_dssp HHHHHHHHHHHHTHHHHGGGC
T ss_pred cHHHHHHHHHHhhHhhCCCCc
Confidence 689999999999999998654
No 55
>3oa8_B SOXX; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_B*
Probab=96.96 E-value=0.0021 Score=57.93 Aligned_cols=65 Identities=29% Similarity=0.377 Sum_probs=36.2
Q ss_pred CCCCCCchhHHhhhcCChHHH---HHHHhcCCCCCCCcccCCCCcCCCCCCCCcccCccccccCcccccCCChhhHhhhH
Q 042592 176 GAYPPDLSLITKARHDGQNYV---FALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMG 252 (310)
Q Consensus 176 Ga~PPDLSliakaR~~G~dYI---yslL~gy~dpP~g~~~~~g~~yN~~fpg~~iaMP~~L~d~~v~y~DGtpat~~Q~a 252 (310)
|.+-|+|.-+...|...++.| |..+. + |.+ +.|+ ..||..-..+.+ + ++.+
T Consensus 139 G~~GP~Lag~~~~r~~~~~~L~~~~~~I~---~-~~~-----------~~p~--~~MP~fa~~g~L-----S----deEI 192 (208)
T 3oa8_B 139 GTLGPSLVGYGRERNFSAEDAKIAFAKVY---D-AQA-----------SLAC--SSMPRFGVNGVL-----T----EQQI 192 (208)
T ss_dssp CSSSCCCTTHHHHTTTCHHHHHHHHHHHH---C-GGG-----------TSTT--CSSCCTTTTTSS-----C----HHHH
T ss_pred CCcCCCcccccccccCCHHHHHHHHHHhh---C-ccC-----------CCCC--CCCCcccccCCC-----C----HHHH
Confidence 445588988876553234333 33333 2 211 1244 579886421111 2 4578
Q ss_pred HHHHHHHhhhcCCc
Q 042592 253 KDVVTFLSWAAEPE 266 (310)
Q Consensus 253 kDVvaFL~waAEP~ 266 (310)
+||++||.-...|.
T Consensus 193 aaLaaYL~s~~sPv 206 (208)
T 3oa8_B 193 KDVVAYLFDPESPV 206 (208)
T ss_dssp HHHHHHHHCTTSGG
T ss_pred HHHHHHHHccCCCC
Confidence 99999999877763
No 56
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=96.88 E-value=0.00041 Score=66.90 Aligned_cols=25 Identities=32% Similarity=0.672 Sum_probs=22.1
Q ss_pred cchHHHHhHHHHHHHhhcccccccc
Q 042592 90 YDHASIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 90 ~D~aslqRG~qvy~~vCaaCHSlk~ 114 (310)
.+.+++++|.++|.+.|++||+.+-
T Consensus 334 ~~~~~~~~G~~ly~~~Ca~CHg~~g 358 (442)
T 2zoo_A 334 NKDEQIRFGQRVYEANCMACHQANG 358 (442)
T ss_dssp SHHHHHHHHHHHHHHHTHHHHCTTS
T ss_pred ccchhhHHHHHHHHhhhHHhCCCCC
Confidence 4678899999999999999999755
No 57
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*
Probab=96.86 E-value=0.00039 Score=58.62 Aligned_cols=24 Identities=25% Similarity=0.674 Sum_probs=21.5
Q ss_pred chHHHHhHHHHHHH--------hhcccccccc
Q 042592 91 DHASIRRGHQVYQQ--------VCASCHSMSL 114 (310)
Q Consensus 91 D~aslqRG~qvy~~--------vCaaCHSlk~ 114 (310)
|.+.+.+|.++|.+ .|++||+..-
T Consensus 96 ~~~~~~~G~~l~~~~~~~~~~~~C~~CHg~~g 127 (190)
T 1m70_A 96 DPALAKQGEKLFRGGKLDQGMPACTGCHAPNG 127 (190)
T ss_dssp CHHHHHHHHHHHHHCBGGGTBCCSHHHHCTTS
T ss_pred cccchhhHHHHHhCCCcccCCcchhhcCCCCC
Confidence 67889999999999 9999999754
No 58
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=96.85 E-value=0.00023 Score=52.71 Aligned_cols=21 Identities=29% Similarity=0.643 Sum_probs=18.6
Q ss_pred HHHhHHHHHHHhhcccccccc
Q 042592 94 SIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 94 slqRG~qvy~~vCaaCHSlk~ 114 (310)
++++|.++|.+.|++||+..-
T Consensus 2 ~~~~G~~l~~~~C~~CHg~~g 22 (89)
T 1f1f_A 2 DVAAGASVFSANCAACHMGGR 22 (89)
T ss_dssp CHHHHHHHHHHHTHHHHGGGC
T ss_pred cHHHHHHHHHHHhHHhCCCCC
Confidence 578999999999999999753
No 59
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=96.83 E-value=0.00083 Score=62.64 Aligned_cols=24 Identities=38% Similarity=0.732 Sum_probs=20.2
Q ss_pred chHHHHhHHHHHHHhhcccccccc
Q 042592 91 DHASIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 91 D~aslqRG~qvy~~vCaaCHSlk~ 114 (310)
+.+.+++|.++|.+.|++||+.+-
T Consensus 218 ~~~~~~~G~~lf~~~Ca~CHg~~g 241 (311)
T 3mk7_C 218 TDADLSAGKNVYAQTCAVCHGQGG 241 (311)
T ss_dssp CCCCHHHHHHHHHHTTHHHHCTTS
T ss_pred ccccchhhHHHHhhhHHhcCCCCC
Confidence 345689999999999999999654
No 60
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=96.81 E-value=0.0002 Score=55.64 Aligned_cols=26 Identities=19% Similarity=0.484 Sum_probs=22.1
Q ss_pred CCcchHHHHhHHHHHHHhhccccccc
Q 042592 88 SSYDHASIRRGHQVYQQVCASCHSMS 113 (310)
Q Consensus 88 ~~~D~aslqRG~qvy~~vCaaCHSlk 113 (310)
+..|.+.+.+|.++|.++|++||+..
T Consensus 12 ~~~~~~~~~~G~~ly~~~Ca~CHg~~ 37 (99)
T 3dp5_A 12 GAETAVPNSGGGELFATHCAGCHPQG 37 (99)
T ss_dssp CGGGCCCCCCHHHHHHHHTTTTSGGG
T ss_pred CCCCcccHHHHHHHHHHHHHHhCCCC
Confidence 34577788999999999999999964
No 61
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=96.81 E-value=0.00022 Score=52.73 Aligned_cols=19 Identities=32% Similarity=0.847 Sum_probs=17.3
Q ss_pred HHHhHHHHHHHhhcccccc
Q 042592 94 SIRRGHQVYQQVCASCHSM 112 (310)
Q Consensus 94 slqRG~qvy~~vCaaCHSl 112 (310)
++++|.++|.+.|++||+.
T Consensus 2 d~~~G~~l~~~~C~~CHg~ 20 (88)
T 3dmi_A 2 DVGAGEQIFNANCAACHAG 20 (88)
T ss_dssp CHHHHHHHHHHHTHHHHGG
T ss_pred cHHHHHHHHHHHHHHhCCC
Confidence 4789999999999999993
No 62
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=96.80 E-value=0.00034 Score=53.48 Aligned_cols=22 Identities=32% Similarity=0.801 Sum_probs=19.4
Q ss_pred HHHHhHHHHHHHhhcccccccc
Q 042592 93 ASIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 93 aslqRG~qvy~~vCaaCHSlk~ 114 (310)
+++.+|.++|.+.|++||+..-
T Consensus 3 ~~~~~G~~l~~~~Ca~CHg~~g 24 (105)
T 2ce0_A 3 LDIQRGATLFNRACAACHDTGG 24 (105)
T ss_dssp CCHHHHHHHHHHHTTTTSGGGC
T ss_pred hhHHHHHHHHHHHHHHhCCCCC
Confidence 4578999999999999999765
No 63
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=96.78 E-value=0.0017 Score=65.86 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=26.5
Q ss_pred CCCCCCCCCCCcchHHHHhHHHHHHHhhcccccccc
Q 042592 79 YPWPHKGILSSYDHASIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 79 ~~w~~~g~~~~~D~aslqRG~qvy~~vCaaCHSlk~ 114 (310)
.+|.... -..|.+.+++|.++|++.|++||+..-
T Consensus 579 ~~~~~~~--~~~~~~~~~~G~~l~~~~C~~CHg~~g 612 (677)
T 1kb0_A 579 TGQLLQG--VKYDPAKVEAGTMLYVANCVFCHGVPG 612 (677)
T ss_dssp CCCCCCC--CCCCGGGHHHHHHHHHHHTHHHHCSTT
T ss_pred cCCCCCC--CCCChhhHHHHHHHHhhhhhhhCCCCC
Confidence 3455443 245788999999999999999999754
No 64
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=96.70 E-value=0.00046 Score=51.10 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=15.9
Q ss_pred HHHHhHHHHHHHhhccccccc
Q 042592 93 ASIRRGHQVYQQVCASCHSMS 113 (310)
Q Consensus 93 aslqRG~qvy~~vCaaCHSlk 113 (310)
+.+++|.++|.+.|++||+..
T Consensus 3 g~~~~G~~ly~~~Ca~CHg~~ 23 (85)
T 3cu4_A 3 GSGAGGGELFATHCAGCHPQG 23 (85)
T ss_dssp ----CHHHHHHHHTTTTSGGG
T ss_pred ccHHHHHHHHHHHhHHhCCCC
Confidence 467899999999999999974
No 65
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=96.54 E-value=0.00036 Score=51.94 Aligned_cols=22 Identities=23% Similarity=0.641 Sum_probs=19.0
Q ss_pred HHHHhHHHHHHHhhcccccccc
Q 042592 93 ASIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 93 aslqRG~qvy~~vCaaCHSlk~ 114 (310)
+++.+|.++|.+.|++||+...
T Consensus 7 ~~~~~G~~l~~~~C~~CHg~~~ 28 (87)
T 2zon_G 7 QLDPAGEKLYRSACVVCHASGV 28 (87)
T ss_dssp CCCHHHHHHHHHTTHHHHTTTG
T ss_pred hhhhHHHHHHHHHhHHHcCCCC
Confidence 3468999999999999999764
No 66
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=96.53 E-value=0.0023 Score=46.92 Aligned_cols=15 Identities=27% Similarity=0.747 Sum_probs=11.1
Q ss_pred HHHH-Hhhcccccccc
Q 042592 100 QVYQ-QVCASCHSMSL 114 (310)
Q Consensus 100 qvy~-~vCaaCHSlk~ 114 (310)
++|. +.|++||+..-
T Consensus 3 ~l~~~~~C~~CHg~~g 18 (80)
T 1ayg_A 3 QLAKQKGCMACHDLKA 18 (80)
T ss_dssp TTTTSSSSGGGCCSSC
T ss_pred hhHhhCCchhhcCCCC
Confidence 4665 57999999643
No 67
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4
Probab=96.50 E-value=0.00061 Score=57.06 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=11.6
Q ss_pred HHHHhHHHHHHHhhcccccccc
Q 042592 93 ASIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 93 aslqRG~qvy~~vCaaCHSlk~ 114 (310)
+++.+|.++| ..|++||+..-
T Consensus 4 ~~~~~G~~l~-~~Ca~CHg~~g 24 (183)
T 1h1o_A 4 ADAPAPYRVS-SDCMVCHGMTG 24 (183)
T ss_dssp --------CG-GGTHHHHCBTT
T ss_pred ccHHHHHHHH-hHHHHhcCCCC
Confidence 4678999999 99999999754
No 68
>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1
Probab=96.44 E-value=0.00069 Score=55.83 Aligned_cols=31 Identities=16% Similarity=0.505 Sum_probs=24.7
Q ss_pred CCCCCCCCCcchHHHHhHHHHHHHhhccccc
Q 042592 81 WPHKGILSSYDHASIRRGHQVYQQVCASCHS 111 (310)
Q Consensus 81 w~~~g~~~~~D~aslqRG~qvy~~vCaaCHS 111 (310)
....|-.-.++.+.+.+|.++|.+.|++||+
T Consensus 12 ~~~~g~~~~~~~~d~~~G~~lf~~~Ca~CH~ 42 (135)
T 1e29_A 12 LDEAGGTTTLTARQFTNGQKIFVDTCTQCHL 42 (135)
T ss_dssp SSSSSCEEECCHHHHHHHHHHHHHHTHHHHG
T ss_pred cCCCCCccCCCcccHHHHHHHHHhHHHHhcC
Confidence 3334433457889999999999999999999
No 69
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=96.43 E-value=0.00049 Score=51.21 Aligned_cols=20 Identities=30% Similarity=0.898 Sum_probs=17.4
Q ss_pred HHHhHHHHHHHhhccccccc
Q 042592 94 SIRRGHQVYQQVCASCHSMS 113 (310)
Q Consensus 94 slqRG~qvy~~vCaaCHSlk 113 (310)
++++|.++|.+.|++||+..
T Consensus 2 ~~~~G~~ly~~~Ca~CHg~~ 21 (81)
T 1kx2_A 2 DLQDAEAIYNKACTVCHSMG 21 (81)
T ss_dssp CCSCHHHHHHHSTTSSTTTT
T ss_pred ccccHHHHHHHHHHHHcCCC
Confidence 45789999999999999964
No 70
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=95.35 E-value=0.00059 Score=64.87 Aligned_cols=19 Identities=53% Similarity=1.064 Sum_probs=17.4
Q ss_pred HhHHHHHHHhhcccccccc
Q 042592 96 RRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 96 qRG~qvy~~vCaaCHSlk~ 114 (310)
++|.++|++.|++||+..-
T Consensus 237 ~~G~~lf~~~Ca~CHg~~g 255 (337)
T 2yev_B 237 ERGQQVFQQNCAACHGVAR 255 (337)
Confidence 8999999999999999754
No 71
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=95.91 E-value=0.00093 Score=50.42 Aligned_cols=20 Identities=30% Similarity=0.742 Sum_probs=17.2
Q ss_pred HHHhHHHHHHHhhccccccc
Q 042592 94 SIRRGHQVYQQVCASCHSMS 113 (310)
Q Consensus 94 slqRG~qvy~~vCaaCHSlk 113 (310)
++++|.++|.++|++||+..
T Consensus 3 ~~~~G~~ly~~~Ca~CHg~~ 22 (83)
T 1cc5_A 3 GARSGDDVVAKYCNACHGTG 22 (83)
T ss_dssp CSSCSHHHHHHTTHHHHTTT
T ss_pred hhHHHHHHHHHHHHHHCcCC
Confidence 34689999999999999964
No 72
>2bh4_X Cytochrome C-550; C-type cytochrome, heme, electron transfer, axial ligand, pyrrolidone carboxylic acid; HET: HEC; 1.55A {Paracoccus versutus} PDB: 2bh5_X* 2bgv_X* 1cot_A*
Probab=95.91 E-value=0.0014 Score=54.33 Aligned_cols=20 Identities=20% Similarity=0.743 Sum_probs=18.0
Q ss_pred HHHhHHHHHHHhhcccccccc
Q 042592 94 SIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 94 slqRG~qvy~~vCaaCHSlk~ 114 (310)
.+.||.++|++ |++||++..
T Consensus 4 d~~~G~~lF~~-C~~CH~v~~ 23 (134)
T 2bh4_X 4 DAAKGEKEFNK-CKACHMVQA 23 (134)
T ss_dssp CHHHHHHHGGG-TTTTCCEEC
T ss_pred cHHHHHHHHHH-hHhhcCCcC
Confidence 47899999998 999999875
No 73
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*
Probab=95.45 E-value=0.0053 Score=51.60 Aligned_cols=20 Identities=25% Similarity=0.584 Sum_probs=17.0
Q ss_pred HHHhHHHHHHHhhcccccccc
Q 042592 94 SIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 94 slqRG~qvy~~vCaaCHSlk~ 114 (310)
.+.+|.++ .++|++||+..-
T Consensus 3 ~~~~G~~l-~~~C~~CHg~~g 22 (190)
T 1m70_A 3 DAEAGQGK-VAVCGACHGVDG 22 (190)
T ss_dssp CHHHHHTT-CGGGHHHHCTTS
T ss_pred chhHHHHH-HhHHHhhcCCCC
Confidence 47899999 789999999754
No 74
>2xts_B Cytochrome; oxidoreductase-electron transport complex, SOX system, sulfa oxidation, molybdenum cofactor, heme, electron transfer; HET: MTE HEC; 1.33A {Paracoccus pantotrophus}
Probab=95.14 E-value=0.0049 Score=54.54 Aligned_cols=25 Identities=24% Similarity=0.525 Sum_probs=22.0
Q ss_pred cchHHHHhHHHHHHHhhcccccccc
Q 042592 90 YDHASIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 90 ~D~aslqRG~qvy~~vCaaCHSlk~ 114 (310)
.+.+.+++|.++|.+.|++||+..-
T Consensus 30 ~~~~~~~~G~~Ly~~~Ca~CHG~~G 54 (205)
T 2xts_B 30 PGSGDVATGDALFADNCASCHGDFA 54 (205)
T ss_dssp SCEEEHHHHHHHHHHHTHHHHCTTS
T ss_pred CChhhHHHHHHHHHhhhHHhCCCCC
Confidence 4567899999999999999999865
No 75
>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*
Probab=95.10 E-value=0.012 Score=50.12 Aligned_cols=45 Identities=4% Similarity=0.103 Sum_probs=28.5
Q ss_pred ChHHHHHHHhcCCCCCCCcccCCCCcCCCCCCCCcccCccccccCcccccCCChhhHhhhHHHHHHHHhhhc
Q 042592 192 GQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLIDGALEYEDGTPATEAQMGKDVVTFLSWAA 263 (310)
Q Consensus 192 G~dYIyslL~gy~dpP~g~~~~~g~~yN~~fpg~~iaMP~~L~d~~v~y~DGtpat~~Q~akDVvaFL~waA 263 (310)
.++||+..|..|.+ |...| ..|+++... -.++.++||++|+.+..
T Consensus 33 ~~~~i~~~l~~~~~---------g~~~~-------~~M~~~~~~-----------Ls~~di~~la~Y~~s~~ 77 (174)
T 3vrd_A 33 DPAVFVEVMEQFKS---------GEIQS-------TIMGRIAKG-----------YSTADFQKMAEYFKQQT 77 (174)
T ss_dssp CHHHHHHHHHHHHH---------TSSCC-------SSHHHHHTT-----------SCHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHhhc---------CCccc-------cccchhhcc-----------CCHHHHHHHHhhhhccc
Confidence 68999999988742 11112 236655331 12457799999999865
No 76
>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*
Probab=95.01 E-value=0.016 Score=58.09 Aligned_cols=18 Identities=39% Similarity=0.794 Sum_probs=16.7
Q ss_pred hHHHHHHHhhcccccccc
Q 042592 97 RGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 97 RG~qvy~~vCaaCHSlk~ 114 (310)
.|.++|.+.|++|||..+
T Consensus 2 ~GkeLv~anCasCHsad~ 19 (489)
T 1pby_A 2 TGEEVLQNACAACHVQHE 19 (489)
T ss_dssp CHHHHHHHTGGGTSCBCT
T ss_pred ChHHHHHhhhHhhcCCCc
Confidence 489999999999999977
No 77
>1cxc_A Cytochrome C2; electron transport (cytochrome); HET: HEM; 1.60A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1cxa_A* 1l9b_C* 1l9j_C* 2cxb_A*
Probab=94.92 E-value=0.0057 Score=49.80 Aligned_cols=20 Identities=20% Similarity=0.604 Sum_probs=17.2
Q ss_pred HHHhHHHHHHHhhcccccccc
Q 042592 94 SIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 94 slqRG~qvy~~vCaaCHSlk~ 114 (310)
.+.+|.++|+ .|++||++..
T Consensus 4 d~~~G~~~F~-~C~~CH~v~~ 23 (124)
T 1cxc_A 4 DPEAGAKAFN-QCQTCHVIVD 23 (124)
T ss_dssp CHHHHHHHGG-GGGGTCCEEC
T ss_pred CHHHHHHHHH-hhhhhcCCCC
Confidence 4689999996 6999999864
No 78
>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*
Probab=94.18 E-value=0.023 Score=57.15 Aligned_cols=19 Identities=26% Similarity=0.551 Sum_probs=16.8
Q ss_pred HhHHHHHHHhhcccccccc
Q 042592 96 RRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 96 qRG~qvy~~vCaaCHSlk~ 114 (310)
+.|.++|.++|++|||..+
T Consensus 2 a~Gk~LF~~NCAaCHGaga 20 (494)
T 1jmx_A 2 EQGPSLLQNKCMGCHIPEG 20 (494)
T ss_dssp CCHHHHHHHHHBTTBCEEE
T ss_pred chhhHHHhhhhhhhcCCCc
Confidence 4699999999999999765
No 79
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=94.17 E-value=0.015 Score=58.75 Aligned_cols=26 Identities=31% Similarity=0.722 Sum_probs=23.4
Q ss_pred CcchHHHHhHHHHHHHhhcccccccc
Q 042592 89 SYDHASIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 89 ~~D~aslqRG~qvy~~vCaaCHSlk~ 114 (310)
..|.+.+++|.++|.+.|++||+..-
T Consensus 574 ~~~~~~~~~G~~l~~~~Ca~CHg~~g 599 (668)
T 1kv9_A 574 TAAPEQVQAGKQLYGQFCSVCHGMGT 599 (668)
T ss_dssp CCCHHHHHHHHHHHHHHTHHHHCGGG
T ss_pred CCCHHHHHHHHHHHhhhhHhhCcCCC
Confidence 46889999999999999999999755
No 80
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=94.13 E-value=0.015 Score=59.18 Aligned_cols=26 Identities=38% Similarity=0.783 Sum_probs=23.2
Q ss_pred CcchHHHHhHHHHHHHhhcccccccc
Q 042592 89 SYDHASIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 89 ~~D~aslqRG~qvy~~vCaaCHSlk~ 114 (310)
..|.+.+++|.++|.+.|++||+..-
T Consensus 589 ~~~~~~~~~G~~ly~~~Ca~CHg~~g 614 (689)
T 1yiq_A 589 SNDTASIEAGAKLYDGYCSQCHGIHA 614 (689)
T ss_dssp CSCHHHHHHHHHHHHHHTHHHHCGGG
T ss_pred CCCHHHHHHHHHHHhhhhhhhCCCCC
Confidence 45889999999999999999999764
No 81
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4
Probab=94.08 E-value=0.011 Score=49.29 Aligned_cols=25 Identities=28% Similarity=0.709 Sum_probs=21.3
Q ss_pred cchHHHHhHHHHHHH--------hhcccccccc
Q 042592 90 YDHASIRRGHQVYQQ--------VCASCHSMSL 114 (310)
Q Consensus 90 ~D~aslqRG~qvy~~--------vCaaCHSlk~ 114 (310)
.|.+.+.+|.++|.+ .|++||+...
T Consensus 95 ~~~~~~~~G~~l~~~~~~~~~~~~C~~CHg~~g 127 (183)
T 1h1o_A 95 IKHAGAKEGKAIFNQGVTNEQIPACMECHGSDG 127 (183)
T ss_dssp CCCTTHHHHHHHHHHCBGGGTBCCTHHHHCTTS
T ss_pred CchhhHHhHHHHHHcCCcccCCCcchhhCCCCC
Confidence 356779999999999 9999999654
No 82
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=93.54 E-value=0.014 Score=42.79 Aligned_cols=18 Identities=33% Similarity=0.923 Sum_probs=15.3
Q ss_pred hHHHHHHH----hhcccccccc
Q 042592 97 RGHQVYQQ----VCASCHSMSL 114 (310)
Q Consensus 97 RG~qvy~~----vCaaCHSlk~ 114 (310)
.|.++|.+ .|++||+..-
T Consensus 1 ~G~~ly~~g~~~~C~~CHg~~g 22 (78)
T 1gks_A 1 DGESIYINGTAPTCSSCHDRGV 22 (78)
T ss_dssp CHHHHHHTSSSSCSHHHHTTTG
T ss_pred CHHHHHhhccccchhhhCCCCC
Confidence 38899997 9999999754
No 83
>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*
Probab=93.21 E-value=0.037 Score=46.99 Aligned_cols=26 Identities=31% Similarity=0.650 Sum_probs=22.3
Q ss_pred CcchHHHHhHHHHHHHhhcccccccc
Q 042592 89 SYDHASIRRGHQVYQQVCASCHSMSL 114 (310)
Q Consensus 89 ~~D~aslqRG~qvy~~vCaaCHSlk~ 114 (310)
..|.+.+.+|.++|...|++||+..-
T Consensus 84 ~~~~~~~~~g~~~~~~~Ca~CHg~~G 109 (174)
T 3vrd_A 84 SFDKALVAKGTKLHDKYCEKCHVESG 109 (174)
T ss_dssp CCCGGGHHHHHHHHHHHTTTTSGGGG
T ss_pred ccchhhhccchhhhcchhHhhcCcCC
Confidence 34678899999999999999999654
No 84
>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*
Probab=93.07 E-value=0.13 Score=49.38 Aligned_cols=127 Identities=17% Similarity=0.311 Sum_probs=60.8
Q ss_pred HHHHhHHHHHHHh-hcccccccccchhhcccCCCCHHHHH---HH--HHhhcccCCCCCCCCCcCCCCCCCCCCCCCC--
Q 042592 93 ASIRRGHQVYQQV-CASCHSMSLISYRDLVGVAYTEDETK---AM--AAEIEVVDGPNDEGEMFTRPGKLSDRFPQPY-- 164 (310)
Q Consensus 93 aslqRG~qvy~~v-CaaCHSlk~v~yr~L~~~g~te~evk---a~--Aae~~v~d~p~~~g~~f~rp~~~~D~~~sp~-- 164 (310)
.+-+||+++|... |++||+-....=.....+|+.++... .+ .-.+.|...+.|.| .|.-|..-.=-...||
T Consensus 200 ~~e~rG~~LF~~~gC~~CH~g~~ftd~~f~~~Gv~~~~~~~~~~~~D~Gr~~vt~~~~D~g-~FktPsLRNVa~TaPYmH 278 (341)
T 4aan_A 200 STAEQGLALFLDKGCAACHSGVNMGGTGYFPFGVREDPGPVVRPVDDTGRYKVTSTAADKY-VFRSPSLRNVAITMPYFH 278 (341)
T ss_dssp HHHHHHHHHHHHHTGGGTSCBTTTSCSCEEESCSSSCCCTTTSCTTCCBTHHHHCCGGGTT-EEECCCCTTGGGSCSBST
T ss_pred HHHHHHHHhcCcccCCCCCCCcccccccccccccccCCccccCccccccccccCCCHHHcC-ccCCCccccccccCCCcc
Confidence 4678999999775 99999865532222222332110000 00 00011222222333 2222222222223444
Q ss_pred -----ChHHHHHHHcCCCCCCCchhHHhhhcCChHHHHHHHhcCCCC-CCCcccCCCCcCCCCCCCCcccCccccc
Q 042592 165 -----SNEQAARFANGGAYPPDLSLITKARHDGQNYVFALLTGYRDP-PAGVSIREGLHYNPYFPGGAIAMPKMLI 234 (310)
Q Consensus 165 -----~n~~Aa~~An~Ga~PPDLSliakaR~~G~dYIyslL~gy~dp-P~g~~~~~g~~yN~~fpg~~iaMP~~L~ 234 (310)
.-+++-+.-|.|..+-+||-- -.+-|-+||..-.|+ |. + .+|.+|...-..|.|..
T Consensus 279 dG~~~tLeevv~~y~~~~~~~~Lt~~------E~~~LvAFL~tLtd~~p~-~-------~~P~lP~~~~~tp~p~~ 340 (341)
T 4aan_A 279 SGKVWKLKDAVKIMGSAQLGISITDA------DADKIVTFLNTLTGAQPK-V-------MHPVLPPNSDDTPRPVS 340 (341)
T ss_dssp TCCBCCHHHHHHHHHHHHHSCCCCHH------HHHHHHHHHHTTCCCCCC-C-------CCCCCCCCCTTSCCCCC
T ss_pred CCCcCCHHHHHHHHhccCcCCCCCHH------HHHHHHHHHHccCCCCCC-C-------CCCCCCCCCCCCCCCCC
Confidence 234444444444444444432 345677899887554 32 2 36777766667777764
No 85
>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans}
Probab=91.57 E-value=0.044 Score=50.02 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=20.7
Q ss_pred cchHHHHhHHHHHHHh-------hccccccc
Q 042592 90 YDHASIRRGHQVYQQV-------CASCHSMS 113 (310)
Q Consensus 90 ~D~aslqRG~qvy~~v-------CaaCHSlk 113 (310)
-+.+..+||.++|+.. |++||+-.
T Consensus 157 ~~~~~~~~G~~lF~~~~G~~~~aCa~CHg~~ 187 (264)
T 2c1d_A 157 PAAPYWEHGKEIYYTRYGQLEMSCANCHEDN 187 (264)
T ss_dssp GGHHHHHHHHHHHHCCBTTTTBCHHHHHTTS
T ss_pred cccHHHHHHHHHHHhhcCCCCCcccccCCCC
Confidence 3567899999999986 99999975
No 86
>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding, oxidoreduc electron transport; HET: HEC; 2.3A {Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB: 1eb7_A*
Probab=91.51 E-value=0.092 Score=49.62 Aligned_cols=22 Identities=23% Similarity=0.575 Sum_probs=19.2
Q ss_pred HHHHhHHHHHHH-hhcccccccc
Q 042592 93 ASIRRGHQVYQQ-VCASCHSMSL 114 (310)
Q Consensus 93 aslqRG~qvy~~-vCaaCHSlk~ 114 (310)
.+.+||+++|.+ .|++||+...
T Consensus 183 ~~~~~G~~lF~~~~Ca~CH~~~~ 205 (323)
T 2vhd_A 183 AQQKKGLKAFMDSGCSACHNGIN 205 (323)
T ss_dssp HHHHHHHHHHHHTTGGGTSCBTT
T ss_pred HHHHHHHHHHhcCCccccCCCcc
Confidence 567999999998 8999999654
No 87
>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus}
Probab=91.25 E-value=0.084 Score=49.99 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.2
Q ss_pred HHHHhHHHHHHH-hhcccccccc
Q 042592 93 ASIRRGHQVYQQ-VCASCHSMSL 114 (310)
Q Consensus 93 aslqRG~qvy~~-vCaaCHSlk~ 114 (310)
.+.+||+++|.. .|++||+...
T Consensus 186 ~~~~~G~~lF~~~~Ca~CH~~~~ 208 (328)
T 1zzh_A 186 ADEKAGLKLFIDTGCAACHNGIN 208 (328)
T ss_dssp HHHHHHHHHHHHHTGGGTSCBTT
T ss_pred HHHHHHHHHHhcCCccccCCCcc
Confidence 577999999998 8999999654
No 88
>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision, ammonia-oxidizing bacteria, oxidoreductase; HET: HEM; 1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5
Probab=91.19 E-value=0.087 Score=49.37 Aligned_cols=23 Identities=17% Similarity=0.466 Sum_probs=19.4
Q ss_pred hHHHHhHHHHHHH-hhcccccccc
Q 042592 92 HASIRRGHQVYQQ-VCASCHSMSL 114 (310)
Q Consensus 92 ~aslqRG~qvy~~-vCaaCHSlk~ 114 (310)
..+.+||+++|.. .|++||+...
T Consensus 168 t~~~~~G~~LF~~~gCa~CH~~~~ 191 (308)
T 1iqc_A 168 NQDELEGYNLFKGSGCVQCHNGPA 191 (308)
T ss_dssp CHHHHHHHHHHHHHTGGGTSCTTT
T ss_pred CHHHHHHHHHHcCCChhhcCCCcc
Confidence 3678999999998 7999998653
No 89
>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme, oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus pantotrophus} PDB: 2c1u_A*
Probab=91.17 E-value=0.087 Score=50.26 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=19.1
Q ss_pred HHHHhHHHHHHH-hhcccccccc
Q 042592 93 ASIRRGHQVYQQ-VCASCHSMSL 114 (310)
Q Consensus 93 aslqRG~qvy~~-vCaaCHSlk~ 114 (310)
.+.+||+++|.+ .|++||+...
T Consensus 197 ~~~~~G~~lF~~~~Ca~CH~~~~ 219 (338)
T 2c1v_A 197 DQEKRGLQAFMETGCTACHYGVN 219 (338)
T ss_dssp HHHHHHHHHHHHHTGGGTSCBTT
T ss_pred HHHHHHHHHHhCCCccccCCCcc
Confidence 567999999998 8999999654
No 90
>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*
Probab=90.79 E-value=0.053 Score=49.44 Aligned_cols=23 Identities=30% Similarity=0.765 Sum_probs=20.3
Q ss_pred chHHHHhHHHHHHH-------hhccccccc
Q 042592 91 DHASIRRGHQVYQQ-------VCASCHSMS 113 (310)
Q Consensus 91 D~aslqRG~qvy~~-------vCaaCHSlk 113 (310)
+.+..+||.++|+. .|++||+-.
T Consensus 155 ~~~~~~~G~~lF~~~~g~~~~~Ca~CHg~~ 184 (261)
T 1h32_A 155 AQSTWEKGREIYYTRYGQLDLSCASCHEQY 184 (261)
T ss_dssp GHHHHHHHHHHHTCCBTTTTBCHHHHHTTS
T ss_pred ccHHHHHHHHHHHHhcCCCCCcccccCCCC
Confidence 56789999999998 599999974
No 91
>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron transport; HET: HEM CIT; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB: 1rz5_A* 1rz6_A*
Probab=90.48 E-value=0.11 Score=49.10 Aligned_cols=22 Identities=27% Similarity=0.546 Sum_probs=18.7
Q ss_pred HHHHhHHHHHHH-hhcccccccc
Q 042592 93 ASIRRGHQVYQQ-VCASCHSMSL 114 (310)
Q Consensus 93 aslqRG~qvy~~-vCaaCHSlk~ 114 (310)
.+.+||+++|.+ -|++||+...
T Consensus 183 ~~~~~G~~lF~~~gCa~CH~~~~ 205 (326)
T 1nml_A 183 ESEKEGLALFMDRGCTACHSGVN 205 (326)
T ss_dssp HHHHHHHHHHHHTTGGGTSCBTT
T ss_pred HHHHHHHHHHccCCccccCCCCC
Confidence 567999999997 6999999654
No 92
>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}
Probab=90.03 E-value=0.13 Score=48.98 Aligned_cols=23 Identities=26% Similarity=0.648 Sum_probs=19.4
Q ss_pred hHHHHhHHHHHHHh-hcccccccc
Q 042592 92 HASIRRGHQVYQQV-CASCHSMSL 114 (310)
Q Consensus 92 ~aslqRG~qvy~~v-CaaCHSlk~ 114 (310)
..+.+||+++|... |++||+-..
T Consensus 176 t~~e~~G~~LF~~~gCa~CH~g~~ 199 (320)
T 3o5c_A 176 SGDAKAGYQLFKDKGCVSCHNGPA 199 (320)
T ss_dssp CHHHHHHHHHHHHTTGGGTSCTTT
T ss_pred CHHHHHHHHHHccCCcccccCCcc
Confidence 35788999999887 999999654
No 93
>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A {Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*
Probab=89.09 E-value=0.16 Score=48.76 Aligned_cols=21 Identities=19% Similarity=0.534 Sum_probs=17.8
Q ss_pred HHHHhHHHHHHHh-hccccccc
Q 042592 93 ASIRRGHQVYQQV-CASCHSMS 113 (310)
Q Consensus 93 aslqRG~qvy~~v-CaaCHSlk 113 (310)
++-+||+++|... |++||+-.
T Consensus 205 ~~e~rG~~LF~~~~Ca~CH~g~ 226 (345)
T 3hq9_A 205 GKQTAGLKLFLDKGCVACHGGL 226 (345)
T ss_dssp HHHHHHHHHHHHTTGGGTSCTT
T ss_pred HHHHHHHHHHccCCcccccCCh
Confidence 4678999999876 99999953
No 94
>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A*
Probab=87.25 E-value=0.17 Score=46.84 Aligned_cols=20 Identities=15% Similarity=0.431 Sum_probs=17.6
Q ss_pred HHHHhHHHHHHH-------hhcccccc
Q 042592 93 ASIRRGHQVYQQ-------VCASCHSM 112 (310)
Q Consensus 93 aslqRG~qvy~~-------vCaaCHSl 112 (310)
-.+.+|.++|.+ .|++||+.
T Consensus 51 ~~v~~G~~lf~~~~g~n~~~Ca~CHg~ 77 (275)
T 3oa8_A 51 LNVDRGEVLWSEPRGTRNVSLETCDLG 77 (275)
T ss_dssp HHHHHHHHHHTCCBTTTTBCSTTCBSS
T ss_pred HHHHHHHHHHcCcCCCCCCcccccCCc
Confidence 578999999997 79999974
No 95
>1e8e_A Cytochrome C''; oxidoreductase(cytochrome), ligand detachment, redox-BOHR effect, paramagnetic; HET: HEC; NMR {Methylophilus methylotrophus} SCOP: a.3.1.1 PDB: 1gu2_A* 1oae_A*
Probab=86.00 E-value=0.053 Score=45.44 Aligned_cols=26 Identities=35% Similarity=0.730 Sum_probs=20.9
Q ss_pred CcchHHHHhHHHHHH----------Hhhcccccccc
Q 042592 89 SYDHASIRRGHQVYQ----------QVCASCHSMSL 114 (310)
Q Consensus 89 ~~D~aslqRG~qvy~----------~vCaaCHSlk~ 114 (310)
.|+.++.+||.++|. -.|++||+-..
T Consensus 22 ~F~~~~A~rGkalf~~~~~~~~g~~~sCaSCH~~~~ 57 (124)
T 1e8e_A 22 MYEAPSITDGKIFFNRKFKTPSGKEAACASCHTNNP 57 (124)
T ss_dssp TCCCCCSSSTTGGGTCCEEETTTEEECTTTTSCSCT
T ss_pred CcchhhHHHHHHHHhccccccCCCCCcccccCCCCC
Confidence 456668899999994 47999999765
No 96
>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*
Probab=83.42 E-value=0.24 Score=49.77 Aligned_cols=34 Identities=18% Similarity=0.322 Sum_probs=24.4
Q ss_pred HHHhHHHHHHHhhcccccccc-cchhhcccCCCCHHHHHHH
Q 042592 94 SIRRGHQVYQQVCASCHSMSL-ISYRDLVGVAYTEDETKAM 133 (310)
Q Consensus 94 slqRG~qvy~~vCaaCHSlk~-v~yr~L~~~g~te~evka~ 133 (310)
.+.+|.++|.+.|++||+..- -.+|+ +.+|.+.+
T Consensus 88 ~va~G~eLF~~NCAaCHG~dGkG~qRr------~~~EW~~l 122 (494)
T 1jmx_A 88 TVEQFDTQLSETCGRCHSGARVALQRR------PAKEWEHL 122 (494)
T ss_dssp CCCCCCHHHHHHHSSSSCSHHHHTEEC------CHHHHHHH
T ss_pred hhhhHHHHHhhhhhhcCCcccCccccC------CHHHHHHH
Confidence 357899999999999999865 22344 45666544
No 97
>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1dw1_A* 1dw2_A* 1dw3_A*
Probab=83.35 E-value=0.25 Score=40.63 Aligned_cols=21 Identities=24% Similarity=0.784 Sum_probs=17.8
Q ss_pred HHHhHHHHHHH----------hhcccccccc
Q 042592 94 SIRRGHQVYQQ----------VCASCHSMSL 114 (310)
Q Consensus 94 slqRG~qvy~~----------vCaaCHSlk~ 114 (310)
++.||.++|.+ -|++||+.+.
T Consensus 21 ~a~RG~alf~~~~~~~~g~~pSCaSCHg~~p 51 (112)
T 1dw0_A 21 DAERGRALFLSTQTGGKPDTPSCTTCHGADV 51 (112)
T ss_dssp CHHHHHHHHHCCCSSSCTTCCSTHHHHCSST
T ss_pred cHHHHHHHHhhhcccCCCCCCcccccCCCCc
Confidence 67899999933 7999999866
No 98
>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans}
Probab=82.90 E-value=0.4 Score=43.67 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=19.2
Q ss_pred hHHHHhHHHHHHH-------hhccccccc
Q 042592 92 HASIRRGHQVYQQ-------VCASCHSMS 113 (310)
Q Consensus 92 ~aslqRG~qvy~~-------vCaaCHSlk 113 (310)
...++.|.++|.+ .|++||+..
T Consensus 59 ~~~v~~G~~LF~~~~~~~~~sCasCHG~~ 87 (264)
T 2c1d_A 59 MVFVDRGLDKWNAAMGVNGESCASCHQGP 87 (264)
T ss_dssp HHHHHHHHHHHHSCCSTTSCCHHHHHCSG
T ss_pred HHHHHHHHHHHcCCCCCCCcChhhcCCCC
Confidence 3468999999999 999999875
No 99
>3sjl_A Methylamine utilization protein MAUG; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 3sle_A* 3svw_A* 3sxt_A* 3l4o_A* 3pxs_A* 3pxt_A* 3pxw_A* 3l4m_A* 3sws_A* 3orv_A* 3rmz_A* 3rlm_A* 3rn0_A* 3rn1_A*
Probab=81.25 E-value=0.69 Score=44.84 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=17.6
Q ss_pred HHHHhHHHHHHH-hhccccccc
Q 042592 93 ASIRRGHQVYQQ-VCASCHSMS 113 (310)
Q Consensus 93 aslqRG~qvy~~-vCaaCHSlk 113 (310)
++-+||+++|+. .|++||+..
T Consensus 187 ~~e~rG~~LF~~~~C~~CH~g~ 208 (373)
T 3sjl_A 187 PLEEFGYTVFITWNCRLCHMQR 208 (373)
T ss_dssp HHHHHHHHHHHHSGGGGTSSSC
T ss_pred HHHHHHHHHHCcCCCccccCCc
Confidence 456899999976 799999953
No 100
>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*
Probab=80.92 E-value=0.37 Score=43.82 Aligned_cols=22 Identities=23% Similarity=0.628 Sum_probs=19.2
Q ss_pred hHHHHhHHHHHHH-------hhccccccc
Q 042592 92 HASIRRGHQVYQQ-------VCASCHSMS 113 (310)
Q Consensus 92 ~aslqRG~qvy~~-------vCaaCHSlk 113 (310)
...++.|.++|.+ .|++||+..
T Consensus 55 ~~~v~~G~~LF~~~~~~~~~sCasCHg~~ 83 (261)
T 1h32_A 55 MVFVEEARAVWDRPEGTEGKACADCHGAV 83 (261)
T ss_dssp HHHHHHHHHHHTSCCSTTCCCHHHHHCSH
T ss_pred HHHHHHHHHHHcCCCCCCCcChhHhCcCC
Confidence 3578999999999 999999864
No 101
>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A*
Probab=80.54 E-value=0.38 Score=44.51 Aligned_cols=25 Identities=16% Similarity=0.428 Sum_probs=20.7
Q ss_pred cchHHHHhHHHHHH-------Hhhcccccccc
Q 042592 90 YDHASIRRGHQVYQ-------QVCASCHSMSL 114 (310)
Q Consensus 90 ~D~aslqRG~qvy~-------~vCaaCHSlk~ 114 (310)
.|.+.+.+|.++|. ..|++||+..-
T Consensus 160 ~~~~~~~~G~~lf~~r~G~~~~~Ca~CHg~~G 191 (275)
T 3oa8_A 160 QEKEMYAIGEALFFRRSSINDFSCSTCHGAAG 191 (275)
T ss_dssp HHHHHHHHHHHHHHCCBTTTTBCHHHHHSSSS
T ss_pred ccHHHHHHHHHHHHhccCCCCCchHhhCCCcC
Confidence 46788999999993 57999999754
No 102
>1fgj_A Hydroxylamine oxidoreductase; nitrification; HET: HEM HEC; 2.80A {Nitrosomonas europaea} SCOP: a.138.1.3
Probab=78.04 E-value=0.098 Score=52.93 Aligned_cols=17 Identities=24% Similarity=0.622 Sum_probs=13.2
Q ss_pred HHHHHhhcccccccccc
Q 042592 100 QVYQQVCASCHSMSLIS 116 (310)
Q Consensus 100 qvy~~vCaaCHSlk~v~ 116 (310)
+-..++|..||+-+++.
T Consensus 354 ~~~~~~C~~CHs~~~a~ 370 (546)
T 1fgj_A 354 DSWVLTCTQCHSERFAR 370 (546)
T ss_dssp HHHHHHHTTTSCHHHHH
T ss_pred hhhhccccccCCcHHHH
Confidence 44678999999977754
No 103
>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus}
Probab=74.42 E-value=1.1 Score=42.32 Aligned_cols=25 Identities=28% Similarity=0.626 Sum_probs=21.4
Q ss_pred cchHHHHhHHHHHHHh---------hcccccccc
Q 042592 90 YDHASIRRGHQVYQQV---------CASCHSMSL 114 (310)
Q Consensus 90 ~D~aslqRG~qvy~~v---------CaaCHSlk~ 114 (310)
.+.+.++.|.++|-.- |++||....
T Consensus 29 ~~~~~v~lGk~LF~D~~LS~~~~~SCasCH~~~~ 62 (328)
T 1zzh_A 29 VTRDKIDLGAMLFFDPRMSKSGVFSCQSCHNVGL 62 (328)
T ss_dssp CTTHHHHHHHHHHHCGGGSTTSSCCHHHHSBTTT
T ss_pred CCHHHHHHHHHHhCCcccccCCCcchhhcCCccc
Confidence 5788999999999766 999999643
No 104
>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron transport; HET: HEM CIT; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB: 1rz5_A* 1rz6_A*
Probab=74.19 E-value=1.7 Score=40.89 Aligned_cols=25 Identities=20% Similarity=0.611 Sum_probs=21.8
Q ss_pred CcchHHHHhHHHHHHH---------hhccccccc
Q 042592 89 SYDHASIRRGHQVYQQ---------VCASCHSMS 113 (310)
Q Consensus 89 ~~D~aslqRG~qvy~~---------vCaaCHSlk 113 (310)
-.+.+.++.|.++|-. .|++||...
T Consensus 25 ~~~~~~v~lGk~LF~D~~LS~~~~~sCasCH~~~ 58 (326)
T 1nml_A 25 ELTQAKVELGKMEFFEPRLSSSHLISCNTCHNVG 58 (326)
T ss_dssp CCCHHHHHHHHHHHTCGGGSTTSCCCHHHHSCTT
T ss_pred CCCHHHHHHHHHHhcCcccccCCCccchhcCCcc
Confidence 4689999999999987 599999964
No 105
>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding, oxidoreduc electron transport; HET: HEC; 2.3A {Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB: 1eb7_A*
Probab=73.32 E-value=1.1 Score=42.23 Aligned_cols=25 Identities=16% Similarity=0.555 Sum_probs=21.8
Q ss_pred CcchHHHHhHHHHHHHh---------hccccccc
Q 042592 89 SYDHASIRRGHQVYQQV---------CASCHSMS 113 (310)
Q Consensus 89 ~~D~aslqRG~qvy~~v---------CaaCHSlk 113 (310)
-.+.+.++.|.++|-.- |++||...
T Consensus 25 ~~~~~~v~lGk~LF~d~~LS~~~~~sCasCH~~~ 58 (323)
T 2vhd_A 25 PISEQQRELGKKLFFDPRLSRSHVLSCNTCHNVG 58 (323)
T ss_dssp ECCHHHHHHHHHHHTCGGGSSSSCCCHHHHSCGG
T ss_pred CCCHHHHHHHHHHhcCccccCCCCcchhhcCCCc
Confidence 35788999999999987 99999964
No 106
>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A {Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*
Probab=73.00 E-value=2.1 Score=41.06 Aligned_cols=26 Identities=23% Similarity=0.632 Sum_probs=22.7
Q ss_pred CcchHHHHhHHHHHHH---------hhcccccccc
Q 042592 89 SYDHASIRRGHQVYQQ---------VCASCHSMSL 114 (310)
Q Consensus 89 ~~D~aslqRG~qvy~~---------vCaaCHSlk~ 114 (310)
..+.+.++.|.++|-. -|++||....
T Consensus 47 ~~~~~~v~lG~~LF~d~rLS~~~~~sCasCH~~~~ 81 (345)
T 3hq9_A 47 PASPVKVELGKMLYFDPRLSASHLISCNTCHNVGL 81 (345)
T ss_dssp CCCHHHHHHHHHHHHCGGGSTTSCCCHHHHSBTTT
T ss_pred CCCHHHHHHHHHHhCCcccCCCCCCchhhcCChhh
Confidence 4689999999999986 8999999764
No 107
>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision, ammonia-oxidizing bacteria, oxidoreductase; HET: HEM; 1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5
Probab=72.92 E-value=2.2 Score=39.86 Aligned_cols=26 Identities=23% Similarity=0.539 Sum_probs=21.5
Q ss_pred CcchHHHHhHHHHHH---------Hhhcccccccc
Q 042592 89 SYDHASIRRGHQVYQ---------QVCASCHSMSL 114 (310)
Q Consensus 89 ~~D~aslqRG~qvy~---------~vCaaCHSlk~ 114 (310)
..+.+.++.|.++|- .-|++||....
T Consensus 13 ~~~~~~v~lGk~LF~D~~LS~~~~~SCasCH~~~~ 47 (308)
T 1iqc_A 13 PENADMAELGKMLFFDPRLSKSGFISCNSCHNLSM 47 (308)
T ss_dssp CSSHHHHHHHHHHHTCGGGSSSSCCCHHHHSBTTT
T ss_pred CCCHHHHHHHHHHhcCccccCCCCCCccccCCccc
Confidence 468899999999996 45999999743
No 108
>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme, oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus pantotrophus} PDB: 2c1u_A*
Probab=71.34 E-value=1.2 Score=42.35 Aligned_cols=26 Identities=23% Similarity=0.629 Sum_probs=22.1
Q ss_pred CcchHHHHhHHHHHHH---------hhcccccccc
Q 042592 89 SYDHASIRRGHQVYQQ---------VCASCHSMSL 114 (310)
Q Consensus 89 ~~D~aslqRG~qvy~~---------vCaaCHSlk~ 114 (310)
-.+.+.++.|.++|-. .|++||....
T Consensus 39 ~~~~~~v~lGk~LF~D~~LS~~~~~SCasCH~~~~ 73 (338)
T 2c1v_A 39 PLTAEKIELGKVLFFDPRMSSSGLISCQTCHNVGL 73 (338)
T ss_dssp ECCHHHHHHHHHHHTCGGGSTTSSCCHHHHSBTTT
T ss_pred CCCHHHHHHHHHHhcCcccccCCCcchhhcCCccc
Confidence 3688999999999987 6999999643
No 109
>2fw5_A DHC, diheme cytochrome C; electron transfer, electron transport; HET: HEM; 2.00A {Rhodobacter sphaeroides}
Probab=67.08 E-value=2 Score=36.43 Aligned_cols=17 Identities=18% Similarity=0.462 Sum_probs=14.2
Q ss_pred HHHHHHHhhcccccccc
Q 042592 98 GHQVYQQVCASCHSMSL 114 (310)
Q Consensus 98 G~qvy~~vCaaCHSlk~ 114 (310)
+.++|.+.|++||.+-.
T Consensus 16 ~~~~y~~~C~~CH~a~p 32 (139)
T 2fw5_A 16 TDPLTRTECSACHMAYP 32 (139)
T ss_dssp CCHHHHHHTTSSSCCCC
T ss_pred cHHHHHHHHHhccCCCC
Confidence 45899999999998744
No 110
>2fwt_A DHC, diheme cytochrome C; diheme protein, electron transfer, sphaeroides heme protein, oxygen-binding, electron transpor; HET: HEM; 1.85A {Rhodobacter sphaeroides}
Probab=66.82 E-value=2 Score=35.66 Aligned_cols=17 Identities=18% Similarity=0.462 Sum_probs=13.9
Q ss_pred HHHHHHHhhcccccccc
Q 042592 98 GHQVYQQVCASCHSMSL 114 (310)
Q Consensus 98 G~qvy~~vCaaCHSlk~ 114 (310)
..+.|.+.|++||.+-.
T Consensus 5 ~~~~y~~~C~~CH~a~p 21 (125)
T 2fwt_A 5 TDPLTRTECSACHMAYP 21 (125)
T ss_dssp CCHHHHHHTSSSSCCCC
T ss_pred cHHHHHHHHHhccCCCC
Confidence 34799999999998644
No 111
>2ykz_A Cytochrome C'; electron transport, haemoprotein, 4-helix bundle; HET: PCA HEC; 0.84A {Achromobacter xylosoxidans} PDB: 3zqv_A* 2xlm_A* 1e83_A* 1e84_A* 1e86_A* 1e85_A* 2yld_A* 2yli_A* 1cgo_A* 2xle_A* 2xm0_A* 2xlw_A* 2xld_A* 2xm4_A* 2xlo_A* 2yl0_A* 2yl1_A* 2ylg_A* 3zqy_A* 2xl6_A* ...
Probab=65.98 E-value=2.2 Score=34.62 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=19.5
Q ss_pred chHHHHhHHHHHHHhhcccccc
Q 042592 91 DHASIRRGHQVYQQVCASCHSM 112 (310)
Q Consensus 91 D~aslqRG~qvy~~vCaaCHSl 112 (310)
|..+|+..+.-..+.|.+||.-
T Consensus 101 D~~~~~~a~~~v~~sCkaCH~~ 122 (127)
T 2ykz_A 101 DLDKLRAAFGDVGASCKACHDA 122 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999963
No 112
>2j8w_A Cytochrome C'; heme, iron, transport, metal-binding, electron transfer, electron transport; HET: HEM; 1.29A {Rubrivivax gelatinosus} SCOP: a.24.3.2 PDB: 1jaf_A* 2j9b_A*
Probab=65.72 E-value=2.2 Score=34.67 Aligned_cols=21 Identities=29% Similarity=0.550 Sum_probs=19.2
Q ss_pred chHHHHhHHHHHHHhhccccc
Q 042592 91 DHASIRRGHQVYQQVCASCHS 111 (310)
Q Consensus 91 D~aslqRG~qvy~~vCaaCHS 111 (310)
|..+|+..+.--.+.|.+||.
T Consensus 104 D~~~~~~a~~~v~~sCkaCH~ 124 (129)
T 2j8w_A 104 DFAQIKAAVGETGGACKGCHD 124 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999996
No 113
>1mqv_A Cytochrome C'; four-helix bundle, electron transport; HET: HEM; 1.78A {Rhodopseudomonas palustris} SCOP: a.24.3.2 PDB: 1a7v_A*
Probab=65.41 E-value=2.3 Score=34.47 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.6
Q ss_pred chHHHHhHHHHHHHhhcccccc
Q 042592 91 DHASIRRGHQVYQQVCASCHSM 112 (310)
Q Consensus 91 D~aslqRG~qvy~~vCaaCHSl 112 (310)
|..+|+..+.--.+.|.+||.-
T Consensus 98 d~~~~~~a~~~v~~sCkaCH~~ 119 (125)
T 1mqv_A 98 DEASLKANIGGVLGNCKSCHDD 119 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhHHHHHHHH
Confidence 6788999999999999999963
No 114
>1cpq_A Cytochrome C'; electron transport; HET: HEM; 1.72A {Rhodobacter capsulatus} SCOP: a.24.3.2 PDB: 1eky_A 1nbb_A* 1rcp_A* 1cpr_A*
Probab=65.27 E-value=2.3 Score=34.71 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.3
Q ss_pred chHHHHhHHHHHHHhhccccc
Q 042592 91 DHASIRRGHQVYQQVCASCHS 111 (310)
Q Consensus 91 D~aslqRG~qvy~~vCaaCHS 111 (310)
|..+++..+.-..+.|.+||.
T Consensus 103 D~~~~~~a~~~v~~~CkaCH~ 123 (129)
T 1cpq_A 103 DGAAFGAALQKLGGTCKACHD 123 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhHHHHHHH
Confidence 788899999999999999996
No 115
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A*
Probab=63.19 E-value=7.6 Score=41.17 Aligned_cols=73 Identities=12% Similarity=-0.020 Sum_probs=40.8
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhccCCCCCCCCCCCCCCCCCcchHHHHhHHHHHHH-hhcccccc
Q 042592 36 DAGSVGMKSLRAFALLGAGVSGFLSFATIASADEAEHGLACPSYPWPHKGILSSYDHASIRRGHQVYQQ-VCASCHSM 112 (310)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~~~~~~~~w~~~g~~~~~D~aslqRG~qvy~~-vCaaCHSl 112 (310)
+.+|..++....++++.+++.++|+..+...=.. .+..|+.-=+.+|- -.+.++++++|.++|+. .|+.|||+
T Consensus 14 ~~~~~~~~~~~~l~~v~~~~f~vL~~~~~~~y~~---~PPiP~~vv~~~G~-~l~T~~dI~~Gq~~~q~~g~m~~GSi 87 (800)
T 3ayf_A 14 GRKTTNSFLKSILIFTILISSTVLLVGGYWIFKE---MAPRPKEVRSESGE-VLMTKETIIGGQAVFQKYGLMDYGTV 87 (800)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCCCCSEEECTTCC-EEEEHHHHHHHHHHHHHTTGGGTSEE
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---CCCCCceeECCCCC-EEecHHHHHHhHHHHHHcCCcccCcc
Confidence 4556666666666655544444444443222111 11122221233442 36889999999999987 69999997
No 116
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=62.41 E-value=2.5 Score=35.59 Aligned_cols=51 Identities=25% Similarity=0.378 Sum_probs=33.2
Q ss_pred cCCCCHHHHHHHHHhhcccCCCCCCCCCcCCCCCCCCCCCCCCChHHHHHHHcCCCCCCCc
Q 042592 122 GVAYTEDETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYSNEQAARFANGGAYPPDL 182 (310)
Q Consensus 122 ~~g~te~evka~Aae~~v~d~p~~~g~~f~rp~~~~D~~~sp~~n~~Aa~~An~Ga~PPDL 182 (310)
++.-+-+.-|++|.|+++..+.+|.-.|-.. +. .....+-+.|+|.+||||
T Consensus 78 glDsSl~~RkeLA~eL~~~~~~~dSA~mNiw---LH-------k~vm~kLa~NGGkvP~~l 128 (130)
T 2gqb_A 78 DIDSSLSARKELAKELGYSGDMNDSASMNIW---LH-------KQVMSKLVANGGKLPPEI 128 (130)
T ss_dssp CCCCSHHHHHHHHHHHTCCCSSCHHHHHHHH---HH-------HHHHHHHGGGSEECCTTC
T ss_pred CCCccHHHHHHHHHHhCCCCCCCccHHHHHH---HH-------HHHHHHHHHhCCCCChhh
Confidence 5556889999999999998766544221100 00 012234567999999998
No 117
>2ccy_A Cytochrome C; electron transport (heme protein); HET: HEM; 1.67A {Phaeospirillum molischianum} SCOP: a.24.3.2
Probab=59.17 E-value=2.9 Score=34.02 Aligned_cols=20 Identities=20% Similarity=0.584 Sum_probs=18.2
Q ss_pred chHHHHhHHHHHHHhhccccc
Q 042592 91 DHASIRRGHQVYQQVCASCHS 111 (310)
Q Consensus 91 D~aslqRG~qvy~~vCaaCHS 111 (310)
| ..++..+.-..+.|.+||.
T Consensus 104 d-~~~~~a~~~v~~~CkaCH~ 123 (128)
T 2ccy_A 104 P-DALKAQAAATGKVCKACHE 123 (128)
T ss_dssp H-HHHHHHHHHHHHHHHHHHH
T ss_pred h-HHHHHHHHHHHhHHHHHHH
Confidence 6 7899999999999999996
No 118
>3vrc_A Cytochrome C'; C-type cytpchrome, electron transport; HET: HEC PG4; 1.00A {Thermochromatium tepidum} PDB: 1bbh_A*
Probab=58.95 E-value=3.5 Score=34.01 Aligned_cols=21 Identities=14% Similarity=0.529 Sum_probs=19.3
Q ss_pred chHHHHhHHHHHHHhhccccc
Q 042592 91 DHASIRRGHQVYQQVCASCHS 111 (310)
Q Consensus 91 D~aslqRG~qvy~~vCaaCHS 111 (310)
|..+|+..+.--.+.|-+||.
T Consensus 106 d~~~~~~a~~~vg~tCkaCH~ 126 (131)
T 3vrc_A 106 EANAVKSAFADVGAACKACHQ 126 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999995
No 119
>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*
Probab=51.27 E-value=3.5 Score=41.39 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=22.4
Q ss_pred HHhHHHHHHHhhccccccccc-chhhcccCCCCHHHHHHH
Q 042592 95 IRRGHQVYQQVCASCHSMSLI-SYRDLVGVAYTEDETKAM 133 (310)
Q Consensus 95 lqRG~qvy~~vCaaCHSlk~v-~yr~L~~~g~te~evka~ 133 (310)
..+|-++|.+.|+.||+.-.+ -||+ +.+|.+.+
T Consensus 89 ~~~ggelfr~nCA~CHn~A~~~~qRR------~~~EW~~l 122 (489)
T 1pby_A 89 DEGPDTSMTQTCGRCHSYARVALQRR------TPEDWKHL 122 (489)
T ss_dssp CCCSSHHHHHHHSSSSCTHHHHTEEE------CHHHHHHH
T ss_pred ccCchhhHHhhHhhhCCchhhhhccC------ChHHHHHH
Confidence 345668999999999997553 3444 45566544
No 120
>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}
Probab=48.66 E-value=10 Score=35.89 Aligned_cols=26 Identities=23% Similarity=0.608 Sum_probs=21.5
Q ss_pred CCcchHHHHhHHHHHHH---------hhccccccc
Q 042592 88 SSYDHASIRRGHQVYQQ---------VCASCHSMS 113 (310)
Q Consensus 88 ~~~D~aslqRG~qvy~~---------vCaaCHSlk 113 (310)
.-.+.+.++-|.++|-. -|++||...
T Consensus 20 n~~~~~kv~LGk~LFfD~rLS~~~~~SCasCH~p~ 54 (320)
T 3o5c_A 20 KITEPEKVELGKMLFFEPRLSKSGFISCNSCHNLS 54 (320)
T ss_dssp CCSCHHHHHHHHHHHTCGGGSTTSCCCHHHHSCTT
T ss_pred CCCCHHHHHHHHHHhCCcccCCCCCCCccccCCcc
Confidence 34689999999999976 499999654
No 121
>1s05_A Cytochrome C-556, C556; THis is A model obtained by -restrained modeling and minimization., electron transport; HET: HEM; NMR {Rhodopseudomonas palustris} SCOP: a.24.3.2
Probab=47.61 E-value=2.8 Score=34.32 Aligned_cols=22 Identities=23% Similarity=0.564 Sum_probs=18.4
Q ss_pred chHHHHhHHHHHHHhhcccccc
Q 042592 91 DHASIRRGHQVYQQVCASCHSM 112 (310)
Q Consensus 91 D~aslqRG~qvy~~vCaaCHSl 112 (310)
|..+|+..+.--.+.|.+||.-
T Consensus 102 d~~~~~~a~~~v~~~CkaCH~~ 123 (129)
T 1s05_A 102 DVDTLKAAMQPIGKACGNCHEN 123 (129)
T ss_dssp SHHHHHHHTTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhHHHHHHHH
Confidence 5777888888888999999973
No 122
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=47.55 E-value=13 Score=23.46 Aligned_cols=23 Identities=13% Similarity=0.111 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHhccccc
Q 042592 278 IFVLSLALLQAGYYRRLRWSVLK 300 (310)
Q Consensus 278 l~fL~il~~l~y~~Kr~~W~~vk 300 (310)
+.-++.|.++.++++|..|+.+.
T Consensus 8 ~~~~i~Flil~~~l~kf~~~Pi~ 30 (34)
T 1b9u_A 8 LGQAIAFVLFVLFCMKYVWPPLM 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456688899999999998764
No 123
>3de8_A Soluble cytochrome B562; Cu-stabilized dimeric superstructure, electron transport, heme, iron, metal-binding, periplasm, transport; HET: HEM; 1.72A {Escherichia coli} SCOP: a.24.3.1 PDB: 2qla_A* 3de9_A* 3c62_A* 3c63_A* 2bc5_A* 3l1m_A* 1qq3_A* 1apc_A 1qpu_A* 256b_A* 3foo_A* 3fop_A* 3nmi_A* 3nmj_A* 3nmk_A* 1lm3_B* 1m6t_A 1yyj_A 1yyx_A 3hnk_A* ...
Probab=47.46 E-value=5.7 Score=31.08 Aligned_cols=21 Identities=14% Similarity=0.474 Sum_probs=19.3
Q ss_pred chHHHHhHHHHHHHhhccccc
Q 042592 91 DHASIRRGHQVYQQVCASCHS 111 (310)
Q Consensus 91 D~aslqRG~qvy~~vCaaCHS 111 (310)
|..+++..++-...-|-+||.
T Consensus 83 d~~~~k~a~~~v~~~Ck~CH~ 103 (106)
T 3de8_A 83 KVKEAQAAAEQLKTTCNACHQ 103 (106)
T ss_dssp CHHHHHHHHHHTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999995
No 124
>3u99_A Diheme cytochrome C; cytochrome C fold, electron transfer protein, electron trans diheme protein, bacterium shewanella baltica OS155; HET: HEC; 1.15A {Shewanella baltica}
Probab=47.13 E-value=6.3 Score=33.60 Aligned_cols=13 Identities=38% Similarity=0.851 Sum_probs=11.1
Q ss_pred HHHHHhhcccccc
Q 042592 100 QVYQQVCASCHSM 112 (310)
Q Consensus 100 qvy~~vCaaCHSl 112 (310)
..|++-|++||-.
T Consensus 13 ~~Y~~eCgsCH~A 25 (148)
T 3u99_A 13 AEYTAECGSCHMA 25 (148)
T ss_dssp HHHHHHHSSSSCC
T ss_pred HHHHHHHHhCCcc
Confidence 4699999999964
No 125
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=45.26 E-value=73 Score=24.53 Aligned_cols=49 Identities=8% Similarity=0.011 Sum_probs=40.8
Q ss_pred ChhhHhhhHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042592 244 TPATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYR 292 (310)
Q Consensus 244 tpat~~Q~akDVvaFL~waAEP~~~~Rk~~G~~Vl~fL~il~~l~y~~K 292 (310)
.-+...+..+|-..||.=+--|.++|=.++-.-+.+-++++.++.|+.|
T Consensus 21 ~~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfiIk 69 (80)
T 2ww9_B 21 LVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYAIK 69 (80)
T ss_dssp CCHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999988888877777777777777754
No 126
>1gqa_A Cytochrome C'; electron transport, heme; HET: HEC; 1.8A {Rhodobacter sphaeroides} SCOP: a.24.3.2
Probab=44.01 E-value=8.1 Score=31.41 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=17.6
Q ss_pred hHHHHhHHHHHHHhhccccc
Q 042592 92 HASIRRGHQVYQQVCASCHS 111 (310)
Q Consensus 92 ~aslqRG~qvy~~vCaaCHS 111 (310)
..+|+..+.-..+.|.+||.
T Consensus 105 ~~~~~~a~~~v~~sCkaCH~ 124 (130)
T 1gqa_A 105 QKELAAAVGKVGGTCKSCHD 124 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 56788899999999999996
No 127
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=43.15 E-value=48 Score=25.10 Aligned_cols=46 Identities=9% Similarity=-0.067 Sum_probs=36.0
Q ss_pred hHhhhHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042592 247 TEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYR 292 (310)
Q Consensus 247 t~~Q~akDVvaFL~waAEP~~~~Rk~~G~~Vl~fL~il~~l~y~~K 292 (310)
...+..+|-..||.=+.-|..+|=+++-.-+.+-++++.++.|+.|
T Consensus 11 ~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~imG~IGfiIk 56 (74)
T 1rh5_B 11 QLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISLLGIIGYIIH 56 (74)
T ss_dssp -CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999988877776666666666666554
No 128
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=42.42 E-value=37 Score=24.76 Aligned_cols=45 Identities=13% Similarity=-0.077 Sum_probs=36.8
Q ss_pred HhhhHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042592 248 EAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYR 292 (310)
Q Consensus 248 ~~Q~akDVvaFL~waAEP~~~~Rk~~G~~Vl~fL~il~~l~y~~K 292 (310)
..+..+|-..||.=+.-|..+|=+++-.-+.+-++++.++-|+.|
T Consensus 8 ~~~f~kd~~rvlk~~~KPd~~Ef~~iak~~~iG~~i~G~iGf~Ik 52 (61)
T 3mp7_B 8 IRHFWKESRRAFLVTKKPNWATYKRAAKITGLGIILIGLIGMLIR 52 (61)
T ss_dssp CTTHHHHHTHHHHHSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999988887777777777777766654
No 129
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=36.51 E-value=58 Score=24.24 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=39.1
Q ss_pred hhHhhhHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042592 246 ATEAQMGKDVVTFLSWAAEPEMEERKLMGFKWIFVLSLALLQAGYYR 292 (310)
Q Consensus 246 at~~Q~akDVvaFL~waAEP~~~~Rk~~G~~Vl~fL~il~~l~y~~K 292 (310)
+...+..+|-..||.=+.-|.++|=.++-.-+.+-++++.++.|+.|
T Consensus 9 e~~~~f~k~~~r~lk~~~KPdr~Ef~~iak~~~iG~~i~G~IGf~Ik 55 (68)
T 2wwb_B 9 EPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFFVK 55 (68)
T ss_dssp TTHHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999988887777777777777777654
No 130
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=31.78 E-value=45 Score=23.02 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042592 277 WIFVLSLALLQAGYYRRL 294 (310)
Q Consensus 277 Vl~fL~il~~l~y~~Kr~ 294 (310)
+++++++.+++..++||+
T Consensus 21 vll~vi~~l~~~~~~RRR 38 (44)
T 2jwa_A 21 ILLVVVLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhheehh
Confidence 445555555556666665
No 131
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=30.71 E-value=14 Score=34.76 Aligned_cols=33 Identities=24% Similarity=0.568 Sum_probs=7.7
Q ss_pred HHhhcccccccccchhhcccCCCCHHHHHHHHHhh
Q 042592 103 QQVCASCHSMSLISYRDLVGVAYTEDETKAMAAEI 137 (310)
Q Consensus 103 ~~vCaaCHSlk~v~yr~L~~~g~te~evka~Aae~ 137 (310)
.-+|..||.+++ |+.+.++.++.+..+++..++
T Consensus 34 ~~~C~Rc~~l~h--y~~~~~v~~~~e~f~~~l~~i 66 (368)
T 3h2y_A 34 QVICQRCFRLKH--YNEIQDVSLTDDDFLRILNGI 66 (368)
T ss_dssp ------------------------CHHHHHHHHHH
T ss_pred CcEEhhhhhhhc--cCccccCCCCHHHHHHHHHHH
Confidence 578999999988 888888888888877766655
No 132
>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*
Probab=29.70 E-value=24 Score=33.56 Aligned_cols=24 Identities=17% Similarity=0.596 Sum_probs=19.7
Q ss_pred cchHHHHhHHHHHHH---------hhccccccc
Q 042592 90 YDHASIRRGHQVYQQ---------VCASCHSMS 113 (310)
Q Consensus 90 ~D~aslqRG~qvy~~---------vCaaCHSlk 113 (310)
.+.+.++-|.++|-. -|++||...
T Consensus 43 ~t~~kv~LGr~LFfD~~LS~~~~~SCASCH~~~ 75 (341)
T 4aan_A 43 ASPSRVELGRMLFFDPRLSASHLISCNTCHNVG 75 (341)
T ss_dssp CCHHHHHHHHHHHHCGGGSTTSCCCHHHHSBGG
T ss_pred CCHHHHHHHHHHhcCcccCCCcCCCccccCCcc
Confidence 578899999999963 599999653
No 133
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=29.11 E-value=34 Score=32.63 Aligned_cols=50 Identities=26% Similarity=0.414 Sum_probs=31.8
Q ss_pred CCCcCCCCCCCCcc-------------cCcccccc--CcccccCCCh-----hhHhhhHHHHHHHHhhhc
Q 042592 214 EGLHYNPYFPGGAI-------------AMPKMLID--GALEYEDGTP-----ATEAQMGKDVVTFLSWAA 263 (310)
Q Consensus 214 ~g~~yN~~fpg~~i-------------aMP~~L~d--~~v~y~DGtp-----at~~Q~akDVvaFL~waA 263 (310)
+|.||+..||.+.+ -.|..|.+ +-|-+...+| +-.+|..+|...||.--+
T Consensus 127 pgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra 196 (359)
T 1m6e_X 127 PGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRA 196 (359)
T ss_dssp ESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHH
T ss_pred chhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999997642 23444443 2222222233 345999999999998754
No 134
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=28.75 E-value=14 Score=28.61 Aligned_cols=21 Identities=48% Similarity=0.494 Sum_probs=15.4
Q ss_pred CCCCCchhHHhhhcCChHHHHHHHhc
Q 042592 177 AYPPDLSLITKARHDGQNYVFALLTG 202 (310)
Q Consensus 177 a~PPDLSliakaR~~G~dYIyslL~g 202 (310)
..|+|||||+.. |-+-.+|+.
T Consensus 27 ~Ap~DLSLMvLG-----N~vTnlln~ 47 (80)
T 2juz_A 27 KAPVDLSLIALG-----NMASNLLTT 47 (80)
T ss_dssp TCCSHHHHHHHH-----HHHHHHHTT
T ss_pred CCCccHHHHHHH-----HHHHHHHhh
Confidence 569999999863 466667663
No 135
>3rt3_C NS1, NS1B, non-structural protein 1; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Influenza b virus} PDB: 1xeq_A 3sdl_A 3r66_A
Probab=27.44 E-value=42 Score=26.52 Aligned_cols=23 Identities=48% Similarity=0.716 Sum_probs=17.6
Q ss_pred hcCCc-----HHHHHHHHHHHHHHHHHH
Q 042592 262 AAEPE-----MEERKLMGFKWIFVLSLA 284 (310)
Q Consensus 262 aAEP~-----~~~Rk~~G~~Vl~fL~il 284 (310)
-.||+ +++||.+|++.|-.|+++
T Consensus 64 k~epe~kr~sle~~kaigvkm~k~llf~ 91 (109)
T 3rt3_C 64 KSEPENKRMSLEERKAIGVKMMKVLLFM 91 (109)
T ss_dssp TTSCGGGCCCHHHHHHHHHHHHHHHHHT
T ss_pred cCCchhhhhhHHHhhhhhHhhhhhheee
Confidence 35776 899999999988655543
No 136
>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit, electron transpo; HET: HEM; 1.90A {Phormidium laminosum} SCOP: b.2.6.1 b.84.2.2 PDB: 1tu2_B*
Probab=27.12 E-value=18 Score=33.26 Aligned_cols=11 Identities=45% Similarity=0.908 Sum_probs=9.2
Q ss_pred Hhhcccccccc
Q 042592 104 QVCASCHSMSL 114 (310)
Q Consensus 104 ~vCaaCHSlk~ 114 (310)
-||+.||-.+.
T Consensus 19 IVCANCHLa~K 29 (249)
T 1ci3_M 19 IVCANCHLAAK 29 (249)
T ss_dssp BGGGGTCCSBC
T ss_pred EEeeccccccC
Confidence 48999998775
No 137
>1hcz_A Cytochrome F; electron transport, photosynthesis, cytochrome B6F complex, chloroplast transmembrane; HET: HEM; 1.96A {Brassica rapa} SCOP: b.2.6.1 b.84.2.2 PDB: 1tkw_B* 1ctm_A* 2pcf_B*
Probab=26.97 E-value=18 Score=33.28 Aligned_cols=11 Identities=55% Similarity=0.942 Sum_probs=9.2
Q ss_pred Hhhcccccccc
Q 042592 104 QVCASCHSMSL 114 (310)
Q Consensus 104 ~vCaaCHSlk~ 114 (310)
-||+.||-.+.
T Consensus 19 IVCANCHLA~K 29 (252)
T 1hcz_A 19 IVCANCHLASK 29 (252)
T ss_dssp BGGGGTCCSBC
T ss_pred EEeeccccccC
Confidence 48999998775
No 138
>1e2w_A Cytochrome F; electron transport proteins, internal water chain, photosynthetic function impaired; HET: HEC; 1.6A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 PDB: 1cfm_A* 1ewh_A* 1e2v_A* 1e2z_A*
Probab=26.96 E-value=18 Score=33.26 Aligned_cols=11 Identities=45% Similarity=0.881 Sum_probs=9.2
Q ss_pred Hhhcccccccc
Q 042592 104 QVCASCHSMSL 114 (310)
Q Consensus 104 ~vCaaCHSlk~ 114 (310)
-||+.||-.+.
T Consensus 19 IVCANCHLA~K 29 (251)
T 1e2w_A 19 IVCANCHLAQK 29 (251)
T ss_dssp BGGGGTCCSBC
T ss_pred EEeeccccccC
Confidence 48999998775
No 139
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=26.03 E-value=56 Score=31.43 Aligned_cols=51 Identities=25% Similarity=0.424 Sum_probs=30.5
Q ss_pred CCCCcCCCCCCCCcc-------------cCcccccc--------CcccccCCChh-----hHhhhHHHHHHHHhhhc
Q 042592 213 REGLHYNPYFPGGAI-------------AMPKMLID--------GALEYEDGTPA-----TEAQMGKDVVTFLSWAA 263 (310)
Q Consensus 213 ~~g~~yN~~fpg~~i-------------aMP~~L~d--------~~v~y~DGtpa-----t~~Q~akDVvaFL~waA 263 (310)
.+|.||+..||.+.+ -.|..|.+ |-|-+...+|. -.+|..+|...||.--+
T Consensus 136 vpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 136 MPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp CCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999997642 23434432 12222222333 34899999999998743
No 140
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=25.45 E-value=19 Score=33.86 Aligned_cols=33 Identities=21% Similarity=0.557 Sum_probs=6.2
Q ss_pred HHhhcccccccccchhhcccCCCCHHHHHHHHHhh
Q 042592 103 QQVCASCHSMSLISYRDLVGVAYTEDETKAMAAEI 137 (310)
Q Consensus 103 ~~vCaaCHSlk~v~yr~L~~~g~te~evka~Aae~ 137 (310)
.-+|..||.+++ |+.+.++.++.+..+++..++
T Consensus 36 ~~~C~RC~~l~h--y~~~~~v~~~~e~f~~~L~~~ 68 (369)
T 3ec1_A 36 EVICQRCFRLKH--YNEVQDVPLDDDDFLSMLHRI 68 (369)
T ss_dssp -------------------------CHHHHHHHHH
T ss_pred CEEchhHHHhhc--cccccCCcCCHHHHHHHHHHh
Confidence 368999999988 899888888877766665554
No 141
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=24.58 E-value=14 Score=28.34 Aligned_cols=20 Identities=30% Similarity=0.492 Sum_probs=14.3
Q ss_pred CCCCCchhHHhhhcCChHHHHHHHh
Q 042592 177 AYPPDLSLITKARHDGQNYVFALLT 201 (310)
Q Consensus 177 a~PPDLSliakaR~~G~dYIyslL~ 201 (310)
..|+|||||+.. |-+-.+|+
T Consensus 27 ~Ap~DLSLMvLG-----N~vTnlln 46 (76)
T 2jr2_A 27 EVTPDLALMCLG-----NAVTNIIA 46 (76)
T ss_dssp TCCHHHHHHHHH-----HHHHHHHT
T ss_pred CCCccHHHHHHH-----HHHHHHHH
Confidence 569999999863 45555555
No 142
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural GEN consortium, NESG, structural genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1 PDB: 2qti_A
Probab=24.44 E-value=14 Score=28.58 Aligned_cols=20 Identities=45% Similarity=0.552 Sum_probs=14.8
Q ss_pred CCCCCchhHHhhhcCChHHHHHHHh
Q 042592 177 AYPPDLSLITKARHDGQNYVFALLT 201 (310)
Q Consensus 177 a~PPDLSliakaR~~G~dYIyslL~ 201 (310)
..|+|||||+.. |-+-.+|.
T Consensus 27 ~Ap~DLSLMvLG-----N~vTnlln 46 (80)
T 2juw_A 27 KAPTDLSLMALG-----NCVTHLLE 46 (80)
T ss_dssp TCCHHHHHHHHH-----HHHHHHHH
T ss_pred CCCccHHHHHHH-----HHHHHHHh
Confidence 569999999863 45666665
No 143
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=23.66 E-value=15 Score=28.61 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=14.4
Q ss_pred CCCCCchhHHhhhcCChHHHHHHHh
Q 042592 177 AYPPDLSLITKARHDGQNYVFALLT 201 (310)
Q Consensus 177 a~PPDLSliakaR~~G~dYIyslL~ 201 (310)
..|+|||||+.. |-+-.+|.
T Consensus 27 ~Ap~DLSLMvLG-----NmvTNlln 46 (83)
T 2jpq_A 27 AASPELTLMIAG-----NIATNVLN 46 (83)
T ss_dssp TCCHHHHHHHHH-----HHHHHHHH
T ss_pred CCCccHHHHHHH-----HHHHHHHh
Confidence 569999999863 45555655
No 144
>1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.2.6.1 b.84.2.2 f.23.23.1 PDB: 2d2c_C* 2e74_C* 2e75_C* 2e76_C* 2zt9_C*
Probab=23.56 E-value=23 Score=33.17 Aligned_cols=9 Identities=56% Similarity=1.257 Sum_probs=0.0
Q ss_pred hhccccccc
Q 042592 105 VCASCHSMS 113 (310)
Q Consensus 105 vCaaCHSlk 113 (310)
||+.||-.+
T Consensus 21 VCANCHLa~ 29 (289)
T 1vf5_C 21 VCANCHLAA 29 (289)
T ss_dssp GGGGTCCCB
T ss_pred Eeecccccc
No 145
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Probab=22.97 E-value=16 Score=28.49 Aligned_cols=20 Identities=40% Similarity=0.546 Sum_probs=14.3
Q ss_pred CCCCCchhHHhhhcCChHHHHHHHh
Q 042592 177 AYPPDLSLITKARHDGQNYVFALLT 201 (310)
Q Consensus 177 a~PPDLSliakaR~~G~dYIyslL~ 201 (310)
..|+|||||+.. |-+-.+|+
T Consensus 27 ~Ap~DLSLMvLG-----NmvTNlln 46 (83)
T 2jrx_A 27 KAPTDLSLMVLG-----NMVTNLIN 46 (83)
T ss_dssp TCCHHHHHHHHH-----HHHHHHHH
T ss_pred CCCccHHHHHHH-----HHHHHHHh
Confidence 569999999863 45555555
No 146
>2jxm_B Cytochrome F; copper, electron transport, metal-binding, transport; HET: HEC; NMR {Prochlorothrix hollandica} SCOP: i.4.1.1
Probab=21.87 E-value=18 Score=33.19 Aligned_cols=11 Identities=45% Similarity=0.878 Sum_probs=9.2
Q ss_pred Hhhcccccccc
Q 042592 104 QVCASCHSMSL 114 (310)
Q Consensus 104 ~vCaaCHSlk~ 114 (310)
-||+.||-.+.
T Consensus 19 IVCANCHLa~K 29 (249)
T 2jxm_B 19 IVCANCHLAKK 29 (249)
T ss_dssp BTHHHHCCSBC
T ss_pred EEeeccccccC
Confidence 48999998876
No 147
>3b42_A GSU0935, methyl-accepting chemotaxis protein, putative; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 1.90A {Geobacter sulfurreducens}
Probab=20.80 E-value=26 Score=28.14 Aligned_cols=10 Identities=50% Similarity=1.105 Sum_probs=8.0
Q ss_pred HHhhcccccc
Q 042592 103 QQVCASCHSM 112 (310)
Q Consensus 103 ~~vCaaCHSl 112 (310)
.+.|.+||..
T Consensus 103 ~~~Cl~CH~~ 112 (135)
T 3b42_A 103 EQRCQSCHDA 112 (135)
T ss_dssp CGGGGGTSCT
T ss_pred CcChHhhcCC
Confidence 4689999954
Done!