BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042593
(352 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|449459636|ref|XP_004147552.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Cucumis sativus]
gi|449484988|ref|XP_004157038.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Cucumis sativus]
Length = 495
Score = 335 bits (858), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 166/318 (52%), Positives = 215/318 (67%), Gaps = 32/318 (10%)
Query: 18 LPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD 77
+PP +D+F YSFL+ +C L G QLHA+ K+GF SHVYV TA+ MY + GFL D
Sbjct: 109 IPPSYDTFAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRMYAASGFLLD 168
Query: 78 SSKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRS 116
+ K+FDE+P+R+ VTWNV+ITGLVK WT IIDGY+R+NR
Sbjct: 169 AMKVFDEMPDRSSVTWNVLITGLVKFGELKRARDVFDQMPMRTVVSWTAIIDGYTRLNRH 228
Query: 117 NEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN 176
EA LF RM A EP+E+T+L + PAI G ++ CQ +H Y EK+GF D+ ++N
Sbjct: 229 EEAAGLFWRMVAHFGMEPNEVTLLTIFPAISNLGALKLCQSVHAYAEKKGFKVSDVRIAN 288
Query: 177 CLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
LID YAKCGCI SASK+FE+ S + KNLVSWT+IISGF MHGMGKEA+E+FE M+K G
Sbjct: 289 SLIDCYAKCGCINSASKVFEEMSAEIKNLVSWTSIISGFTMHGMGKEAMESFEIMEKEGH 348
Query: 237 KPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAE 285
+PNR + EEGL+FF+KMV E ++ PDI HYG LID+L RAGR+E+AE
Sbjct: 349 EPNRVTFLSIVSACSHGGLVEEGLEFFEKMVAEYQIKPDIMHYGSLIDMLGRAGRIEEAE 408
Query: 286 EVASGIPSQITNVVVWRT 303
++A IP +I +VV+WRT
Sbjct: 409 KIALEIPKEIASVVIWRT 426
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 81/185 (43%), Gaps = 20/185 (10%)
Query: 41 NLGTQLHAVFSKVGFQ-SHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG 99
L +HA K GF+ S V + +L D Y G + +SK+F+E+ I
Sbjct: 265 KLCQSVHAYAEKKGFKVSDVRIANSLIDCYAKCGCINSASKVFEEMSAE--------IKN 316
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNC---- 155
LV WT II G++ EA+ F M E EP+ +T L+++ A G V
Sbjct: 317 LVSWTSIISGFTMHGMGKEAMESFEIMEK-EGHEPNRVTFLSIVSACSHGGLVEEGLEFF 375
Query: 156 -QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISG 214
+++ Y K DI LID + G I A K+ + + ++V W T++
Sbjct: 376 EKMVAEYQIKP-----DIMHYGSLIDMLGRAGRIEEAEKIALEIPKEIASVVIWRTLLGA 430
Query: 215 FAMHG 219
+ HG
Sbjct: 431 CSFHG 435
>gi|224123708|ref|XP_002319146.1| predicted protein [Populus trichocarpa]
gi|222857522|gb|EEE95069.1| predicted protein [Populus trichocarpa]
Length = 337
Score = 320 bits (820), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 162/268 (60%), Positives = 193/268 (72%), Gaps = 32/268 (11%)
Query: 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKW---------------------TGI 106
MY+S G L D+ LFDE+P+RN+VTWNV+ITGLVKW TGI
Sbjct: 1 MYLSSGVLGDAMILFDEMPKRNVVTWNVMITGLVKWGKLEFASSLFDEMPEKNVVSWTGI 60
Query: 107 IDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRG 166
IDGY R N+ +E L+LFRRM CE +P+EITILA+LPAI GE+++C LIHGY EKRG
Sbjct: 61 IDGYIRNNKYSEGLSLFRRMVVCEGIKPTEITILAILPAISNMGELKSCSLIHGYAEKRG 120
Query: 167 FNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVE 226
FNAFDI V+N +ID Y+KCGCI SA K FED SV+RKNLVSWT+IISGFAMHGM KEAVE
Sbjct: 121 FNAFDIRVANSIIDCYSKCGCIASAFKFFEDISVERKNLVSWTSIISGFAMHGMWKEAVE 180
Query: 227 NFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDIL 275
FERM+K GLKPNR + +EGL+ F KMV E VLPDIKHYGC++D+L
Sbjct: 181 YFERMEKAGLKPNRVTFLSVLNACSHGGLVDEGLRCFYKMVNEHGVLPDIKHYGCVVDML 240
Query: 276 ERAGRLEQAEEVASGIPSQITNVVVWRT 303
R GRLE+AE +A IPS+I NVV+WRT
Sbjct: 241 GRTGRLEEAENMALEIPSEIVNVVIWRT 268
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 15/193 (7%)
Query: 46 LHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
+H K GF + + V ++ D Y G + + K F+++ +V LV WT
Sbjct: 112 IHGYAEKRGFNAFDIRVANSIIDCYSKCGCIASAFKFFEDI--------SVERKNLVSWT 163
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEV-RNCQLIHGYGE 163
II G++ EA+ F RM +P+ +T L+VL A G V + +
Sbjct: 164 SIISGFAMHGMWKEAVEYFERMEKAGL-KPNRVTFLSVLNACSHGGLVDEGLRCFYKMVN 222
Query: 164 KRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG---M 220
+ G DI C++D + G + A + + + N+V W T++ + HG M
Sbjct: 223 EHGVLP-DIKHYGCVVDMLGRTGRLEEAENMALEIPSEIVNVVIWRTLLGACSFHGNVEM 281
Query: 221 GKEAVENFERMQK 233
G+ M++
Sbjct: 282 GERVTRKIMEMER 294
>gi|356506146|ref|XP_003521848.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Glycine max]
Length = 503
Score = 317 bits (813), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 160/336 (47%), Positives = 218/336 (64%), Gaps = 39/336 (11%)
Query: 1 FLVYKQLQQIYIHSHSPLP-PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHV 59
F Y Q H H+ L P D+F+++FL +Y + GTQLHA+ KVGFQ HV
Sbjct: 105 FFTYTQ------HCHTFLTYPSLDTFSFAFLCHASANPNYTHFGTQLHALVFKVGFQFHV 158
Query: 60 YVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKW---------------- 103
YV T L MY S G L +++++F E+ RNLV+WNV ITGL+KW
Sbjct: 159 YVKTGLLQMYSSSGLLVEAAQVFYEMQHRNLVSWNVFITGLIKWGEVELACSVFNQMPAR 218
Query: 104 -----TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLI 158
T +IDGY+R N+ +AL LFR+M + EP+E+T+L + PAI G ++ CQ +
Sbjct: 219 SVVSWTLVIDGYTRRNQPIKALTLFRKMIEVDGIEPTEVTLLTIFPAIANIGCIKICQSV 278
Query: 159 HGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218
H Y EKRGFNAFD+ ++N L+D YAKCGCI S S+ F++ R+NLVSWT+ ISGFAM+
Sbjct: 279 HVYVEKRGFNAFDVRITNALLDLYAKCGCIASMSRFFQEIPDQRRNLVSWTSTISGFAMN 338
Query: 219 GMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKH 267
GMG+EA+E+FE M+K GL+PN +G EEG+ FF KMV++ ++PDIKH
Sbjct: 339 GMGREALESFESMEKTGLRPNHVTFLGVLSACSHGGLVEEGINFFVKMVKDWCLVPDIKH 398
Query: 268 YGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
YGC+ID+L RAGRLE+AE+VA +P ++ N V+WRT
Sbjct: 399 YGCVIDMLGRAGRLEEAEKVALQVPHEVANAVMWRT 434
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 78/203 (38%), Gaps = 35/203 (17%)
Query: 46 LHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
+H K GF + V + AL D+Y G + S+ F E+P++ LV WT
Sbjct: 278 VHVYVEKRGFNAFDVRITNALLDLYAKCGCIASMSRFFQEIPDQR--------RNLVSWT 329
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
I G++ EAL F M P+ +T L VL A G V +
Sbjct: 330 STISGFAMNGMGREALESFESMEKTGL-RPNHVTFLGVLSACSHGGLV-----------E 377
Query: 165 RGFNAF-----------DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIIS 213
G N F DI C+ID + G + A K+ + N V W T++
Sbjct: 378 EGINFFVKMVKDWCLVPDIKHYGCVIDMLGRAGRLEEAEKVALQVPHEVANAVMWRTLLG 437
Query: 214 GFAMHG---MGKEAVENFERMQK 233
++H +G+ M++
Sbjct: 438 ACSVHNNVEIGQRVTNKILEMER 460
>gi|356554965|ref|XP_003545811.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Glycine max]
Length = 517
Score = 317 bits (812), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 157/335 (46%), Positives = 217/335 (64%), Gaps = 37/335 (11%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
F Y Q I++ P D+F+++FL +Y + GTQLHA+ KVGFQ VY
Sbjct: 119 FFTYTQHCHIFLTY-----PSLDTFSFAFLCHASANPNYTHFGTQLHALIFKVGFQFQVY 173
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK------------------ 102
V T L MY S G L +++++F E+ RNLV+WNV ITGL+K
Sbjct: 174 VQTRLLQMYSSSGLLVEAAQVFYEMQHRNLVSWNVFITGLIKLGEVELACSVFNQMPARS 233
Query: 103 ---WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
WT +IDGY+R N+ +AL LFR+M + EP+E+T+L + PAI G ++ CQ +H
Sbjct: 234 VVSWTLVIDGYTRRNQPIKALTLFRKMIEVDGIEPTEVTLLTIFPAIANIGCIKICQSVH 293
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
GY EKRGFNAFD+ ++N L+D YAKCGCI S S+ F++ R+NLVSWT+ ISGFAM+G
Sbjct: 294 GYVEKRGFNAFDVRITNALLDLYAKCGCIASVSRFFQEIPDQRRNLVSWTSTISGFAMNG 353
Query: 220 MGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHY 268
MG+EA+E+FE M+K GL+PN +G EEG+ FF KMV++ ++PDIKHY
Sbjct: 354 MGREALESFESMEKAGLRPNHVTFLGVLSACSHGGLVEEGINFFVKMVKDWCLVPDIKHY 413
Query: 269 GCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
GC+ID+L RAGRLE+AE++A +P ++ N V+WRT
Sbjct: 414 GCVIDMLGRAGRLEEAEKIALQVPHEVANAVMWRT 448
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 77/203 (37%), Gaps = 35/203 (17%)
Query: 46 LHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
+H K GF + V + AL D+Y G + S+ F E+P++ LV WT
Sbjct: 292 VHGYVEKRGFNAFDVRITNALLDLYAKCGCIASVSRFFQEIPDQR--------RNLVSWT 343
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
I G++ EAL F M P+ +T L VL A G V +
Sbjct: 344 STISGFAMNGMGREALESFESMEKAGL-RPNHVTFLGVLSACSHGGLV-----------E 391
Query: 165 RGFNAF-----------DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIIS 213
G N F DI C+ID + G + A K+ + N V W T++
Sbjct: 392 EGINFFVKMVKDWCLVPDIKHYGCVIDMLGRAGRLEEAEKIALQVPHEVANAVMWRTLLG 451
Query: 214 GFAMHG---MGKEAVENFERMQK 233
+H +G+ M++
Sbjct: 452 ACNVHNNVEIGQRVTNKILEMER 474
>gi|302144057|emb|CBI23162.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 313 bits (801), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 171/335 (51%), Positives = 220/335 (65%), Gaps = 36/335 (10%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
FL+++ L+ +H P P FDSF++SFL++ C L + G QLHA+ K+GF+ HVY
Sbjct: 71 FLLFRHLR---LHHVYP-PLSFDSFSFSFLLKACANLQHREGGLQLHALTLKLGFEFHVY 126
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKW----------------- 103
V+T L ++Y + G ++ ++FDE+P RN VTWNV ITGL KW
Sbjct: 127 VHTVLLNVYAACGAFLEAKQVFDEMPVRNSVTWNVFITGLAKWGELHLACSLLDEMPRPT 186
Query: 104 ----TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
T IIDGY+RMN+ +ALALF M E +P+EIT+LA+ PAI G + CQLIH
Sbjct: 187 VVSWTTIIDGYTRMNQPKQALALFLTMFLDEGIKPTEITLLAIFPAISNLGALEICQLIH 246
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
YGEK G NA DI + L+DTYAKCGCI SAS +F + + +NLVSWT+IIS FAMHG
Sbjct: 247 TYGEKSGLNASDIRIRTSLLDTYAKCGCIESASGVFGEIAAKGRNLVSWTSIISAFAMHG 306
Query: 220 MGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKFFDKMVEECEVLPDIKHY 268
M KEA+ENFERMQK LKPNR + EEGLK F KMV EC++ PD+KHY
Sbjct: 307 MAKEALENFERMQKECLKPNRITFLSVLNACSHGGLVEEGLKLFTKMVNECQISPDVKHY 366
Query: 269 GCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
GCLID+L RAGRL++AE++A IP + NVV+WRT
Sbjct: 367 GCLIDMLGRAGRLDEAEKMALEIPDYVVNVVIWRT 401
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 13/192 (6%)
Query: 46 LHAVFSKVGFQ-SHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
+H K G S + + T+L D Y G ++ +S +F E+ + LV WT
Sbjct: 245 IHTYGEKSGLNASDIRIRTSLLDTYAKCGCIESASGVFGEIAAKG--------RNLVSWT 296
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
II ++ + EAL F RM E +P+ IT L+VL A G V +
Sbjct: 297 SIISAFAMHGMAKEALENFERMQK-ECLKPNRITFLSVLNACSHGGLVEEGLKLFTKMVN 355
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG---MG 221
+ D+ CLID + G + A K+ + N+V W T++ + HG MG
Sbjct: 356 ECQISPDVKHYGCLIDMLGRAGRLDEAEKMALEIPDYVVNVVIWRTLLGACSFHGNVEMG 415
Query: 222 KEAVENFERMQK 233
M++
Sbjct: 416 ARVTRKILEMER 427
>gi|147860607|emb|CAN79717.1| hypothetical protein VITISV_027522 [Vitis vinifera]
Length = 610
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 171/335 (51%), Positives = 220/335 (65%), Gaps = 36/335 (10%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
FL+++ L+ +H P P FDSF++SFL++ C L + G QLHA+ K+GF+ HVY
Sbjct: 71 FLLFRHLR---LHHVYP-PLSFDSFSFSFLLKACANLQHREGGLQLHALTLKLGFEFHVY 126
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKW----------------- 103
V+T L ++Y + G ++ ++FDE+P RN VTWNV ITGL KW
Sbjct: 127 VHTVLLNVYAACGAFLEAKQVFDEMPVRNSVTWNVFITGLAKWGELHLACSLLDEMPRPT 186
Query: 104 ----TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
T IIDGY+RMN+ +ALALF M E +P+EIT+LA+ PAI G + CQLIH
Sbjct: 187 VVSWTTIIDGYTRMNQPKQALALFLTMFLDEGIKPTEITLLAIFPAISNLGALEICQLIH 246
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
YGEK G NA DI + L+DTYAKCGCI SAS +F + + +NLVSWT+IIS FAMHG
Sbjct: 247 TYGEKSGLNASDIRIRTSLLDTYAKCGCIESASGVFGEIAAKGRNLVSWTSIISAFAMHG 306
Query: 220 MGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKFFDKMVEECEVLPDIKHY 268
M KEA+ENFERMQK LKPNR + EEGLK F KMV EC++ PD+KHY
Sbjct: 307 MAKEALENFERMQKECLKPNRITFLSVLNACSHGGLVEEGLKLFTKMVNECQISPDVKHY 366
Query: 269 GCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
GCLID+L RAGRL++AE++A IP + NVV+WRT
Sbjct: 367 GCLIDMLGRAGRLDEAEKMALEIPDYVVNVVIWRT 401
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 13/192 (6%)
Query: 46 LHAVFSKVGFQ-SHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
+H K G S + + T+L D Y G ++ +S +F E+ + LV WT
Sbjct: 245 IHTYGEKSGLNASDIRIRTSLLDTYAKCGCIESASGVFGEIAAKG--------RNLVSWT 296
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
II ++ + EAL F RM E +P+ IT L+VL A G V +
Sbjct: 297 SIISAFAMHGMAKEALENFERMQK-ECLKPNRITFLSVLNACSHGGLVEEGLKLFTKMVN 355
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG---MG 221
+ D+ CLID + G + A K+ + N+V W T++ + HG MG
Sbjct: 356 ECQISPDVKHYGCLIDMLGRAGRLDEAEKMALEIPDYVVNVVIWRTLLGACSFHGNVEMG 415
Query: 222 KEAVENFERMQK 233
M++
Sbjct: 416 ARVTRKILEMER 427
>gi|225444407|ref|XP_002265471.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Vitis vinifera]
Length = 470
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 169/335 (50%), Positives = 220/335 (65%), Gaps = 36/335 (10%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
FL+++ L+ +++ P FDSF++SFL++ C L + G QLHA+ K+GF+ HVY
Sbjct: 71 FLLFRHLRLHHVYP----PLSFDSFSFSFLLKACANLQHREGGLQLHALTLKLGFEFHVY 126
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKW----------------- 103
V+T L ++Y + G ++ ++FDE+P RN VTWNV ITGL KW
Sbjct: 127 VHTVLLNVYAACGAFLEAKQVFDEMPVRNSVTWNVFITGLAKWGELHLACSLLDEMPRPT 186
Query: 104 ----TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
T IIDGY+RMN+ +ALALF M E +P+EIT+LA+ PAI G + CQLIH
Sbjct: 187 VVSWTTIIDGYTRMNQPKQALALFLTMFLDEGIKPTEITLLAIFPAISNLGALEICQLIH 246
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
YGEK G NA DI + L+DTYAKCGCI SAS +F + + +NLVSWT+IIS FAMHG
Sbjct: 247 TYGEKSGLNASDIRIRTSLLDTYAKCGCIESASGVFGEIAAKGRNLVSWTSIISAFAMHG 306
Query: 220 MGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKFFDKMVEECEVLPDIKHY 268
M KEA+ENFERMQK LKPNR + EEGLK F KMV EC++ PD+KHY
Sbjct: 307 MAKEALENFERMQKECLKPNRITFLSVLNACSHGGLVEEGLKLFTKMVNECQISPDVKHY 366
Query: 269 GCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
GCLID+L RAGRL++AE++A IP + NVV+WRT
Sbjct: 367 GCLIDMLGRAGRLDEAEKMALEIPDYVVNVVIWRT 401
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 13/192 (6%)
Query: 46 LHAVFSKVGFQ-SHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
+H K G S + + T+L D Y G ++ +S +F E+ + LV WT
Sbjct: 245 IHTYGEKSGLNASDIRIRTSLLDTYAKCGCIESASGVFGEIAAKG--------RNLVSWT 296
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
II ++ + EAL F RM E +P+ IT L+VL A G V +
Sbjct: 297 SIISAFAMHGMAKEALENFERMQK-ECLKPNRITFLSVLNACSHGGLVEEGLKLFTKMVN 355
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG---MG 221
+ D+ CLID + G + A K+ + N+V W T++ + HG MG
Sbjct: 356 ECQISPDVKHYGCLIDMLGRAGRLDEAEKMALEIPDYVVNVVIWRTLLGACSFHGNVEMG 415
Query: 222 KEAVENFERMQK 233
M++
Sbjct: 416 ARVTRKILEMER 427
>gi|334182414|ref|NP_172393.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75116771|sp|Q680Z7.1|PPR24_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g09220, mitochondrial; Flags: Precursor
gi|51969004|dbj|BAD43194.1| hypothetical protein [Arabidopsis thaliana]
gi|51969582|dbj|BAD43483.1| hypothetical protein [Arabidopsis thaliana]
gi|51969876|dbj|BAD43630.1| hypothetical protein [Arabidopsis thaliana]
gi|62318861|dbj|BAD93927.1| hypothetical protein [Arabidopsis thaliana]
gi|332190294|gb|AEE28415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 164/338 (48%), Positives = 217/338 (64%), Gaps = 37/338 (10%)
Query: 1 FLVYKQLQQI-YIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFS--KVGFQS 57
+ +Y QLQ++ ++ H+ P FDSFTY FL++ +P+L + K+GF+S
Sbjct: 97 YFLYDQLQRLHFLSDHNKSLPPFDSFTYLFLLKASSNPRFPSLLLGIGLHGLTLKLGFES 156
Query: 58 HVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGL----------------- 100
HVYV TAL MY+ G + D+ K+FDE+PERN VTWNV+ITGL
Sbjct: 157 HVYVQTALVGMYLVGGNMIDAHKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMP 216
Query: 101 ----VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQ 156
V WT IIDGY+R+++ EA+ LF RM AC+ +P+EITILA+LPA+W G+++ C
Sbjct: 217 NRTVVSWTTIIDGYARVDKPKEAILLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCG 276
Query: 157 LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFA 216
+H Y KRGF DI V+N LID YAKCGCI SA K F + RKNLVSWTT+IS FA
Sbjct: 277 SVHAYVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFA 336
Query: 217 MHGMGKEAVENFERMQKVGLKPNRSWRIG------------EEGLKFFDKMVEECEVLPD 264
+HGMGKEAV F+ M+++GLKPNR I EE L+FF+ MV E ++ PD
Sbjct: 337 IHGMGKEAVSMFKDMERLGLKPNRVTMISVLNACSHGGLAEEEFLEFFNTMVNEYKITPD 396
Query: 265 IKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
+KHYGCL+D+L R GRLE+AE++A IP + VVWR
Sbjct: 397 VKHYGCLVDMLRRKGRLEEAEKIALEIPIE-EKAVVWR 433
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 16/115 (13%)
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNR---------SWRIGEEGLKFF 252
+ +VSWTTII G+A KEA+ F RM +KPN W +G+ LK
Sbjct: 218 RTVVSWTTIIDGYARVDKPKEAILLFSRMVACDAIKPNEITILAILPAVWNLGD--LKMC 275
Query: 253 DKM---VEECEVLP-DIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ V + +P DI+ LID + G ++ A + IP+ N+V W T
Sbjct: 276 GSVHAYVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTT 330
>gi|255568986|ref|XP_002525463.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535276|gb|EEF36953.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 337
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 157/268 (58%), Positives = 191/268 (71%), Gaps = 32/268 (11%)
Query: 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKW---------------------TGI 106
MY++ GFL ++ FDE+PE+N VTWNV+ITGLVKW TGI
Sbjct: 1 MYLASGFLGNALLAFDEMPEKNSVTWNVMITGLVKWGKLEFARSFFDDMPEKNVVSWTGI 60
Query: 107 IDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRG 166
IDGY RMNR E LALFRRM + E PSEITILA+LPAI GE++NC LIH EKRG
Sbjct: 61 IDGYVRMNRITEGLALFRRMVSFEGIAPSEITILAILPAISGIGELQNCGLIHCLVEKRG 120
Query: 167 FNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVE 226
FN+ DI V+N +IDTYAKCGCI SAS+ FE+ SV+RKNLVSWT+IISGFAMHGMG+EAV+
Sbjct: 121 FNSSDIRVTNSIIDTYAKCGCIVSASRFFEEISVERKNLVSWTSIISGFAMHGMGQEAVK 180
Query: 227 NFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDIL 275
FE M++ GLKPNR + EG +FF+KMV + +LPDIKHYGCL+D+L
Sbjct: 181 RFENMERTGLKPNRVTFLSVLNACSHGGLVAEGHEFFEKMVNQYSILPDIKHYGCLVDML 240
Query: 276 ERAGRLEQAEEVASGIPSQITNVVVWRT 303
R GRLE+AE++A GIPS+I N V+WRT
Sbjct: 241 GRTGRLEEAEKLALGIPSEIVNAVIWRT 268
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 21/196 (10%)
Query: 46 LHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
+H + K GF S + V ++ D Y G + +S+ F+E+ +V LV WT
Sbjct: 112 IHCLVEKRGFNSSDIRVTNSIIDTYAKCGCIVSASRFFEEI--------SVERKNLVSWT 163
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
II G++ EA+ F M +P+ +T L+VL A G V H + EK
Sbjct: 164 SIISGFAMHGMGQEAVKRFENMERTGL-KPNRVTFLSVLNACSHGGLVAEG---HEFFEK 219
Query: 165 RGFNAF----DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG- 219
N + DI CL+D + G + A KL + N V W T++ + HG
Sbjct: 220 M-VNQYSILPDIKHYGCLVDMLGRTGRLEEAEKLALGIPSEIVNAVIWRTLLGACSFHGN 278
Query: 220 --MGKEAVENFERMQK 233
+G+ M++
Sbjct: 279 SEIGERVTRKIMEMER 294
>gi|147772248|emb|CAN78346.1| hypothetical protein VITISV_033453 [Vitis vinifera]
Length = 538
Score = 310 bits (794), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 170/335 (50%), Positives = 221/335 (65%), Gaps = 36/335 (10%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
FL+++ L+ +H P P FDSF++SFL++ C L + G QLHA+ K+GF+ HVY
Sbjct: 71 FLLFRHLR---LHHVYP-PLSFDSFSFSFLLKACANLQHREGGLQLHALTLKLGFEFHVY 126
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKW----------------- 103
V+T L ++Y + G ++ ++FDE+P RN VTWNV ITGL KW
Sbjct: 127 VHTVLLNVYAACGAFLEAKQVFDEMPVRNSVTWNVFITGLAKWGELHLARSLLDEMPMPT 186
Query: 104 ----TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
T IIDGY+RMN+ +ALALF M E +P+EIT+LA+ PAI G + CQLIH
Sbjct: 187 VVSWTTIIDGYTRMNQPKQALALFLTMFLDEGIKPTEITLLAIFPAISNLGALEICQLIH 246
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
YGEK G NA DI + L+DTYAKCGCI SAS++F + +NLVSWT+IIS FAMHG
Sbjct: 247 TYGEKSGLNASDIRIRTSLLDTYAKCGCIESASRVFGEIDAKSRNLVSWTSIISAFAMHG 306
Query: 220 MGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKFFDKMVEECEVLPDIKHY 268
M KEA+ENFERMQK LKPNR + EEGLKFF KMV + ++ PD+KHY
Sbjct: 307 MAKEALENFERMQKECLKPNRITFLSVLNACSHGGLVEEGLKFFTKMVNKYQISPDVKHY 366
Query: 269 GCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
GCLID+L RAGRL++AE++A IP+ + NVV+WRT
Sbjct: 367 GCLIDMLGRAGRLDEAEKMALEIPNYVVNVVIWRT 401
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 86/197 (43%), Gaps = 23/197 (11%)
Query: 46 LHAVFSKVGFQ-SHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
+H K G S + + T+L D Y G ++ +S++F E+ ++ LV WT
Sbjct: 245 IHTYGEKSGLNASDIRIRTSLLDTYAKCGCIESASRVFGEIDAKS--------RNLVSWT 296
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRN-----CQLIH 159
II ++ + EAL F RM E +P+ IT L+VL A G V ++++
Sbjct: 297 SIISAFAMHGMAKEALENFERMQK-ECLKPNRITFLSVLNACSHGGLVEEGLKFFTKMVN 355
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
Y + D+ CLID + G + A K+ + N+V W T++ + HG
Sbjct: 356 KYQ-----ISPDVKHYGCLIDMLGRAGRLDEAEKMALEIPNYVVNVVIWRTLLGACSFHG 410
Query: 220 ---MGKEAVENFERMQK 233
MG M+K
Sbjct: 411 NVEMGARVTRKILEMEK 427
>gi|357469567|ref|XP_003605068.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506123|gb|AES87265.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 494
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 150/314 (47%), Positives = 203/314 (64%), Gaps = 32/314 (10%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
DSFT +FL C L + G LH + K+GF++HV+V T L MY + GFL D++++
Sbjct: 112 LDSFTLTFLAHACANLDTTHFGFHLHCIVCKMGFENHVFVQTGLLHMYSNWGFLVDAAQV 171
Query: 82 FDELPERNLVTWNVIITGLVKW---------------------TGIIDGYSRMNRSNEAL 120
F E+P+RN VTWNV I+GL+KW T +IDGY+RMN+ +AL
Sbjct: 172 FGEMPDRNTVTWNVFISGLIKWGQLEFARSVFDRMVVRSVVSWTLVIDGYTRMNKPLKAL 231
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
ALFR+M + EP+E+T+L V PAI G V+ C+ +HGY EKRGFNA DI + N LID
Sbjct: 232 ALFRKMIEVDGIEPNEVTLLTVFPAIAHLGNVKMCESVHGYVEKRGFNAVDIRIVNALID 291
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
YAKCGCI SAS LF + R+N VSW +++SG+A GM +EAV+ FE+M+K G++PN
Sbjct: 292 LYAKCGCIESASGLFSEMPDWRRNSVSWNSVMSGYATFGMVREAVDTFEKMEKAGVRPNH 351
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
+ EEGL+FF KMV + ++PDIKHYGC+ID+L RAGRL +AE+VA
Sbjct: 352 VAFLSILSACSHSGLVEEGLEFFGKMVNDYGLVPDIKHYGCVIDMLGRAGRLGEAEKVAL 411
Query: 290 GIPSQITNVVVWRT 303
+P + N V+WRT
Sbjct: 412 EVPHEAANDVIWRT 425
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 88/200 (44%), Gaps = 27/200 (13%)
Query: 45 QLHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGLV 101
+H K GF + + + AL D+Y G ++ +S LF E+P+ RN V+WN
Sbjct: 268 SVHGYVEKRGFNAVDIRIVNALIDLYAKCGCIESASGLFSEMPDWRRNSVSWN------- 320
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNC-----Q 156
++ GY+ EA+ F +M P+ + L++L A +G V +
Sbjct: 321 ---SVMSGYATFGMVREAVDTFEKMEKAG-VRPNHVAFLSILSACSHSGLVEEGLEFFGK 376
Query: 157 LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFA 216
+++ YG DI C+ID + G + A K+ + + N V W T++ +
Sbjct: 377 MVNDYGL-----VPDIKHYGCVIDMLGRAGRLGEAEKVALEVPHEAANDVIWRTLLGACS 431
Query: 217 MHG---MGKEAVENFERMQK 233
+H +GK + M+K
Sbjct: 432 VHDNVEIGKRVTKKILEMEK 451
>gi|3249111|gb|AAC24094.1| T12M4.7 [Arabidopsis thaliana]
Length = 412
Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 147/312 (47%), Positives = 191/312 (61%), Gaps = 34/312 (10%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
+F YS L + L+ P S + + TAL MY+ G + D+ K+FD
Sbjct: 31 NFFYSILCFDAILLAKPLFMLTSSTTNSNDSISCLITIRTALVGMYLVGGNMIDAHKVFD 90
Query: 84 ELPERNLVTWNVIITGL---------------------VKWTGIIDGYSRMNRSNEALAL 122
E+PERN VTWNV+ITGL V WT IIDGY+R+++ EA+ L
Sbjct: 91 EMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPNRTVVSWTTIIDGYARVDKPKEAILL 150
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
F RM AC+ +P+EITILA+LPA+W G+++ C +H Y KRGF DI V+N LID Y
Sbjct: 151 FSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVHAYVGKRGFVPCDIRVTNSLIDAY 210
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW 242
AKCGCI SA K F + RKNLVSWTT+IS FA+HGMGKEAV F+ M+++GLKPNR
Sbjct: 211 AKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVSMFKDMERLGLKPNRVT 270
Query: 243 RIG------------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
I EE L+FF+ MV E ++ PD+KHYGCL+D+L R GRLE+AE++A
Sbjct: 271 MISVLNACSHGGLAEEEFLEFFNTMVNEYKITPDVKHYGCLVDMLRRKGRLEEAEKIALE 330
Query: 291 IPSQITNVVVWR 302
IP + VVWR
Sbjct: 331 IPIE-EKAVVWR 341
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 16/115 (13%)
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNR---------SWRIGEEGLKFF 252
+ +VSWTTII G+A KEA+ F RM +KPN W +G+ LK
Sbjct: 126 RTVVSWTTIIDGYARVDKPKEAILLFSRMVACDAIKPNEITILAILPAVWNLGD--LKMC 183
Query: 253 DKM---VEECEVLP-DIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ V + +P DI+ LID + G ++ A + IP+ N+V W T
Sbjct: 184 GSVHAYVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTT 238
>gi|359475755|ref|XP_003631749.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g09220, mitochondrial-like [Vitis vinifera]
Length = 509
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 145/305 (47%), Positives = 191/305 (62%), Gaps = 37/305 (12%)
Query: 32 RTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLV 91
+ C L + G QLHA+ K GF+ HVY++T L ++Y G L ++ ++ DE+P RN V
Sbjct: 140 KACAYLQHRKGGLQLHALTLKAGFEFHVYLHTVLLNVYAVCGALLEAKQVLDEMPVRNSV 199
Query: 92 TWNVIITGLVKW---------------------TGIIDGYSRMNRSNEALALFRRMAACE 130
TWNV+ITGL KW T IIDGY+RMN+ +ALALFR M E
Sbjct: 200 TWNVLITGLAKWGELHLARSLFDEMPMPTVVSWTTIIDGYTRMNQPKQALALFRTMFIDE 259
Query: 131 YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190
+P+EI +LA+ PAI G + CQL+H YGEK G NA DI + N L+DTYAKCGC+ S
Sbjct: 260 GIKPTEIALLAIFPAISNLGALELCQLVHMYGEKSGLNASDIRIRNSLLDTYAKCGCMES 319
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---------- 240
++F + + +NLVSWT++IS FAMHGM KEA+E + K LKPNR
Sbjct: 320 IXRVFGEIAAKSRNLVSWTSVISAFAMHGMAKEALE----ILKECLKPNRITFLSVLNAC 375
Query: 241 -SWRIGEEG-LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNV 298
+ EEG LKFF KMV E ++ PD+KHYG LID+L RAGRL++AE++A P + NV
Sbjct: 376 SHGGLVEEGRLKFFAKMVNEYQMSPDVKHYGGLIDMLGRAGRLDEAEKMALEFPDDVVNV 435
Query: 299 VVWRT 303
V+WRT
Sbjct: 436 VIWRT 440
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 80/193 (41%), Gaps = 18/193 (9%)
Query: 46 LHAVFSKVGFQ-SHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
+H K G S + + +L D Y G ++ ++F E+ ++ LV WT
Sbjct: 287 VHMYGEKSGLNASDIRIRNSLLDTYAKCGCMESIXRVFGEIAAKS--------RNLVSWT 338
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
+I ++ + EAL + + E +P+ IT L+VL A G V +L
Sbjct: 339 SVISAFAMHGMAKEALEILK-----ECLKPNRITFLSVLNACSHGGLVEEGRLKFFAKMV 393
Query: 165 RGFN-AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG---M 220
+ + D+ LID + G + A K+ + D N+V W T++ + HG M
Sbjct: 394 NEYQMSPDVKHYGGLIDMLGRAGRLDEAEKMALEFPDDVVNVVIWRTLLGACSFHGNVEM 453
Query: 221 GKEAVENFERMQK 233
G M++
Sbjct: 454 GARVTRKILEMER 466
>gi|297849224|ref|XP_002892493.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338335|gb|EFH68752.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 337
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 140/268 (52%), Positives = 175/268 (65%), Gaps = 34/268 (12%)
Query: 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITGL---------------------VKWTGI 106
MY+ G + D+ K+FDE+PERN VTWNV+ITGL V WT I
Sbjct: 1 MYLVGGNMIDAYKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMLNRTVVSWTTI 60
Query: 107 IDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRG 166
IDGY+R+N+ EA LF RM AC+ +P+EITILA+LPA+W G+++ C +H Y KRG
Sbjct: 61 IDGYARVNKPKEATLLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVHAYVGKRG 120
Query: 167 FNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVE 226
F DI V+N LID YAKCGCI SA K F + RKNLVSWTT+IS FAMHGMGKEAV
Sbjct: 121 FVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAMHGMGKEAVN 180
Query: 227 NFERMQKVGLKPNRSWRIG------------EEGLKFFDKMVEECEVLPDIKHYGCLIDI 274
F+ M+++GLKPNR I EE LKFF+KMV + ++ PD+KHYGCL+D+
Sbjct: 181 MFKDMERLGLKPNRVTMISVLNACSHGGLAEEEFLKFFNKMVNKYKITPDVKHYGCLVDM 240
Query: 275 LERAGRLEQAEEVASGIPSQITNVVVWR 302
L R GRLE+AE++A IP VVWR
Sbjct: 241 LRRKGRLEEAEKIALEIPID-QKAVVWR 267
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 86/200 (43%), Gaps = 18/200 (9%)
Query: 45 QLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKW 103
+HA K GF + V +L D Y G ++ + K F E+P LV W
Sbjct: 111 SVHAYVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGR--------KNLVSW 162
Query: 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG--EVRNCQLIHGY 161
T +I ++ EA+ +F+ M +P+ +T+++VL A G E + +
Sbjct: 163 TTMISAFAMHGMGKEAVNMFKDMERLGL-KPNRVTMISVLNACSHGGLAEEEFLKFFNKM 221
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
K D+ CL+D + G + A K+ + +D+K +V W ++ ++
Sbjct: 222 VNKYKITP-DVKHYGCLVDMLRRKGRLEEAEKIALEIPIDQKAVV-WRMLLGACNVY--- 276
Query: 222 KEAVENFERMQKVGLKPNRS 241
+ E ER+ + ++ RS
Sbjct: 277 -DDAEMAERVTRKLMELERS 295
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 16/115 (13%)
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNR---------SWRIGEEGLKFF 252
+ +VSWTTII G+A KEA F RM +KPN W +G+ LK
Sbjct: 52 RTVVSWTTIIDGYARVNKPKEATLLFSRMVACDAIKPNEITILAILPAVWNLGD--LKMC 109
Query: 253 DKM---VEECEVLP-DIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ V + +P DI+ LID + G ++ A + IP+ N+V W T
Sbjct: 110 GSVHAYVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTT 164
>gi|48427660|gb|AAT42379.1| At1g09220 [Arabidopsis thaliana]
Length = 338
Score = 268 bits (684), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 137/268 (51%), Positives = 176/268 (65%), Gaps = 34/268 (12%)
Query: 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITGL---------------------VKWTGI 106
MY+ G + D+ K+FDE+PERN VTWNV+ITGL V WT I
Sbjct: 1 MYLVGGNMIDAHKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPNRTVVSWTTI 60
Query: 107 IDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRG 166
IDGY+R+++ EA+ LF RM AC+ +P+EITILA+LPA+W G+++ C +H Y KRG
Sbjct: 61 IDGYARVDKPKEAILLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVHAYVGKRG 120
Query: 167 FNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVE 226
F DI V+N LID YAKCGCI SA K F + RKNLVSWTT+IS FA+HGMGKEAV
Sbjct: 121 FVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGMGKEAVS 180
Query: 227 NFERMQKVGLKPNRSWRIG------------EEGLKFFDKMVEECEVLPDIKHYGCLIDI 274
F+ M+++GLKPNR I EE L+FF+ MV E ++ PD+KHYGCL+D+
Sbjct: 181 MFKDMERLGLKPNRVTMISVLNACSHGGLAEEEFLEFFNTMVNEYKITPDVKHYGCLVDM 240
Query: 275 LERAGRLEQAEEVASGIPSQITNVVVWR 302
L R GRLE+AE++A IP + VVWR
Sbjct: 241 LRRKGRLEEAEKIALEIPIE-EKAVVWR 267
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 88/210 (41%), Gaps = 38/210 (18%)
Query: 45 QLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKW 103
+HA K GF + V +L D Y G ++ + K F E+P LV W
Sbjct: 111 SVHAYVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGR--------KNLVSW 162
Query: 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGE 163
T +I ++ EA+++F+ M +P+ +T+++VL A C HG
Sbjct: 163 TTMISAFAIHGMGKEAVSMFKDMERLGL-KPNRVTMISVLNA---------CS--HGGLA 210
Query: 164 KRGFNAF------------DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTI 211
+ F F D+ CL+D + G + A K+ + ++ K +V W +
Sbjct: 211 EEEFLEFFNTMVNEYKITPDVKHYGCLVDMLRRKGRLEEAEKIALEIPIEEKAVV-WRML 269
Query: 212 ISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
+ +++ + E ER+ + ++ RS
Sbjct: 270 LGACSVY----DDAELAERVTRKLMELERS 295
Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 16/115 (13%)
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNR---------SWRIGEEGLKFF 252
+ +VSWTTII G+A KEA+ F RM +KPN W +G+ LK
Sbjct: 52 RTVVSWTTIIDGYARVDKPKEAILLFSRMVACDAIKPNEITILAILPAVWNLGD--LKMC 109
Query: 253 DKM---VEECEVLP-DIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ V + +P DI+ LID + G ++ A + IP+ N+V W T
Sbjct: 110 GSVHAYVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTT 164
>gi|357131180|ref|XP_003567218.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220,
mitochondrial-like [Brachypodium distachyon]
Length = 474
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 148/336 (44%), Positives = 203/336 (60%), Gaps = 49/336 (14%)
Query: 13 HSHSPLPP----LF---------DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHV 59
+SH P P LF D++ + F +R C L++P G QLH + + GF+ H
Sbjct: 70 YSHGPFPQEALNLFRDAHRNMADDTYAFMFSLRACAGLAWPWTGAQLHGLVIRKGFEFHA 129
Query: 60 YVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG-------------------- 99
YV+T+L + YV G L D+ FDE+P +N+V+WNV+ITG
Sbjct: 130 YVHTSLINTYVVCGCLVDARMAFDEMPVKNVVSWNVMITGFAGRGEIEYARLLFERMPSR 189
Query: 100 -LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLI 158
+V WTG+IDGY+R S EA+AL RRM A E P+EIT+LAV+PAI G + + +
Sbjct: 190 NVVSWTGLIDGYTRSCHSVEAVALLRRMMA-EGISPTEITVLAVVPAISDIGRILMGETL 248
Query: 159 HGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218
HGY EK G DI V N LID YAK G I S+ K+F ++R+NLVSWT+IISGFAMH
Sbjct: 249 HGYCEKNGL-VLDIRVGNSLIDLYAKIGSIQSSLKVFHGM-LNRRNLVSWTSIISGFAMH 306
Query: 219 GMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKH 267
G+ EAVE F M++ G++PNR + E+G++FF MV E + P+IKH
Sbjct: 307 GLSTEAVELFAEMRRSGIRPNRVTFLSVLNACSHGGLVEQGVEFFKSMVYEYNINPEIKH 366
Query: 268 YGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+GC+ID+L RAGRL +AE+V G+P ++ N +VWRT
Sbjct: 367 FGCIIDMLGRAGRLCEAEQVIGGLPMEV-NSIVWRT 401
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 62/133 (46%), Gaps = 13/133 (9%)
Query: 103 WTGIIDGYSRMNRSNEALALF----RRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLI 158
W ++ YS EAL LF R MA Y + A L W + +
Sbjct: 63 WHALLKAYSHGPFPQEALNLFRDAHRNMADDTYAFMFSLRACAGLAWPWTGAQ------L 116
Query: 159 HGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218
HG ++GF F +V LI+TY CGC+ A F++ V KN+VSW +I+GFA
Sbjct: 117 HGLVIRKGFE-FHAYVHTSLINTYVVCGCLVDARMAFDEMPV--KNVVSWNVMITGFAGR 173
Query: 219 GMGKEAVENFERM 231
G + A FERM
Sbjct: 174 GEIEYARLLFERM 186
>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
Length = 1031
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 140/336 (41%), Positives = 201/336 (59%), Gaps = 49/336 (14%)
Query: 13 HSHSPLPP----LF---------DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHV 59
+SH P P LF D++ ++F ++ C L +P QLH + + GF+
Sbjct: 65 YSHGPHPQDALQLFRHARWHAADDTYAFTFALKACAGLGWPRCCMQLHGLVVRKGFEFQT 124
Query: 60 YVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG-------------------- 99
YV+TAL ++Y+ G L DS F+E+P +N V+WNV+ITG
Sbjct: 125 YVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGWGEVEYARLLFERMPCR 184
Query: 100 -LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLI 158
+V W+G+IDGY+R R EA+ALFRRM A E PSEIT+LAV+PA+ G++ + +
Sbjct: 185 NVVSWSGMIDGYTRACRPVEAVALFRRMMA-EGISPSEITVLAVVPALSNVGKILIGEAL 243
Query: 159 HGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218
HGY EK G +D+ V N LID YAK G I ++ ++F D +DR+NLVSWT+IISGFAMH
Sbjct: 244 HGYCEKEGL-VWDVRVGNSLIDLYAKIGSIQNSLRVF-DEMLDRRNLVSWTSIISGFAMH 301
Query: 219 GMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKFFDKMVEECEVLPDIKH 267
G+ +AVE F M++ G++PNR + E+G+ FF M+ E + PD+KH
Sbjct: 302 GLSVKAVELFADMRRAGIRPNRITFLSVLHACSHGGLVEQGVAFFKSMIYEYNINPDVKH 361
Query: 268 YGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+GC+ID+L RAGRL +AE++ P ++ N VWRT
Sbjct: 362 FGCIIDMLGRAGRLREAEQIIRDFPVEV-NATVWRT 396
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 148/312 (47%), Gaps = 37/312 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ C L ++ + + VY+ L D + G L+ + K+F
Sbjct: 652 DKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVF 711
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
+ RN+VT N +I L+ W+ +I GYS+ N ++AL
Sbjct: 712 FNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSDALE 771
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
+FR+M + +P I I +V+ + G + + +H Y + A D + N LID
Sbjct: 772 IFRQMQRAK-VKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKA-DTIMENSLIDM 829
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-- 239
Y KCG A ++F++ + K+ +SW +II G A +G KE++ F+ M G +PN
Sbjct: 830 YMKCGSAKEALQVFKE--MKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGV 887
Query: 240 ---------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+ ++ EEGL F+ M + P +KHYGC++D+L RAG+LE+A +
Sbjct: 888 TFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITE 947
Query: 291 IPSQITNVVVWR 302
+P + VVWR
Sbjct: 948 MPID-PDPVVWR 958
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 145/305 (47%), Gaps = 53/305 (17%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ T+ F+++ C ++ N G Q+H +K+G S ++V+ +L +Y + G L + +F
Sbjct: 551 DNLTFPFILKACARINALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVF 610
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ +++V+WN +I GYS+ NR + LALF+ M E + ++T++ V
Sbjct: 611 DEMVVKDVVSWNSLIC----------GYSQCNRFKDILALFKLMQN-EGVKADKVTMIKV 659
Query: 143 LPAIWKNGEVRNCQLIHGYGE-------------------KRG---------FN--AFDI 172
+ A + G+ + Y E +RG FN +I
Sbjct: 660 VSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNI 719
Query: 173 HVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQ 232
N +I YAK I SA K+F+ + +K+L+SW+++ISG++ +A+E F +MQ
Sbjct: 720 VTMNAMIAAYAKGQDIVSARKIFD--QIPKKDLISWSSMISGYSQANHFSDALEIFRQMQ 777
Query: 233 KVGLKPN---------RSWRIGEEGL-KFFDKMVEECEVLPDIKHYGCLIDILERAGRLE 282
+ +KP+ +G L K+ + V + D LID+ + G +
Sbjct: 778 RAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLIDMYMKCGSAK 837
Query: 283 QAEEV 287
+A +V
Sbjct: 838 EALQV 842
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 117/254 (46%), Gaps = 25/254 (9%)
Query: 45 QLHAVFSKVG-FQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKW 103
+LHA + G + H ++ L + L + K+FD++ WN++I GL +
Sbjct: 471 RLHAYYIVSGLYNCHYAMSKVLRSYAILQPDLVFAHKVFDQIEAPTTFLWNILIRGLAQS 530
Query: 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGE 163
D A+A +++ P +T +L A + + + +H +
Sbjct: 531 DAPAD----------AIAFYKKAQGGGMV-PDNLTFPFILKACARINALNEGEQMHNHIT 579
Query: 164 KRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKE 223
K G + DI VSN LI YA CG + A +F++ V K++VSW ++I G++ K+
Sbjct: 580 KLGLLS-DIFVSNSLIHLYAACGNLCYARSVFDEMVV--KDVVSWNSLICGYSQCNRFKD 636
Query: 224 AVENFERMQKVGLKPNR---------SWRIGEEGL-KFFDKMVEECEVLPDIKHYGCLID 273
+ F+ MQ G+K ++ R+G+ + + + +E+ + D+ L+D
Sbjct: 637 ILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVD 696
Query: 274 ILERAGRLEQAEEV 287
R G+L+ AE+V
Sbjct: 697 YFGRRGQLQSAEKV 710
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 61/131 (46%), Gaps = 9/131 (6%)
Query: 103 WTGIIDGYSRMNRSNEALALFR--RMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHG 160
W ++ YS +AL LFR R A + T + A W R C +HG
Sbjct: 58 WHALLKAYSHGPHPQDALQLFRHARWHAADDTYAFTFALKACAGLGWP----RCCMQLHG 113
Query: 161 YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGM 220
++GF F +V L++ Y CGC+ + FE+ V KN VSW +I+GFA G
Sbjct: 114 LVVRKGFE-FQTYVHTALVNVYILCGCLADSRMAFEEMPV--KNAVSWNVVITGFAGWGE 170
Query: 221 GKEAVENFERM 231
+ A FERM
Sbjct: 171 VEYARLLFERM 181
>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 1467
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 140/328 (42%), Positives = 204/328 (62%), Gaps = 36/328 (10%)
Query: 7 LQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALG 66
L+ +++ H+ D+F ++F+++ C L + G QLHA+ + GF+ H YV+TAL
Sbjct: 462 LEALHLFKHARQHLADDTFVFTFVLKACAGLGWHRAGAQLHALVVQKGFEFHAYVHTALI 521
Query: 67 DMYVSLGFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTG 105
++YV L ++ K+FDE+P +N+V+WNV+ITG +V WTG
Sbjct: 522 NVYVMSRCLVEARKVFDEMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTG 581
Query: 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
+IDGY+R EAL L R M A + PSEIT+LAV+PAI G + ++++GY EK+
Sbjct: 582 LIDGYTRACLYAEALTLLRHMMAGGIS-PSEITVLAVIPAISNLGGILMGEMLNGYCEKK 640
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225
G + D V N LID YAK G + ++ K+F D +DR+NLVSWT+IISGFAMHG+ EA+
Sbjct: 641 GIMS-DARVGNSLIDLYAKIGSVQNSLKVF-DEMLDRRNLVSWTSIISGFAMHGLSVEAL 698
Query: 226 ENFERMQKVGLKPNR-----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDI 274
E F M++ G+KPNR + E+GL FF MV E + P+IKH+GC+ID+
Sbjct: 699 ELFAEMRRAGIKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDM 758
Query: 275 LERAGRLEQAEEVASGIPSQITNVVVWR 302
L RAGRL +AE++ G+P ++ NV VWR
Sbjct: 759 LGRAGRLCEAEQIIEGLPMEV-NVTVWR 785
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 152/312 (48%), Gaps = 37/312 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T +I C L ++ + + VY+ L D Y +G L+ + K+F
Sbjct: 1040 DKVTMVKVISACTHLGDWSMADCMVRYIEHNHIEVDVYLGNTLIDYYCRIGQLQSAEKVF 1099
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
++ ++N VT N +IT L+ W+ +I YS+ + +++L
Sbjct: 1100 SQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLE 1159
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LFR+M + +P + I +VL A G + + IH Y + A D + N LID
Sbjct: 1160 LFRQMQRAK-VKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKA-DTIMENSLIDM 1217
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
+AKCGC+ A ++F D ++ K+ +SW +II G A +G EA++ F M G +PN
Sbjct: 1218 FAKCGCVQEALQVFTD--MEEKDTLSWNSIILGLANNGFEDEALDIFHSMLTEGPRPNEV 1275
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+G EEGL F++M + P +KHYGC++DIL RAG+LE+A S
Sbjct: 1276 TFLGVLIACANRQLVEEGLDHFERMKSVHNLEPQMKHYGCVVDILSRAGQLEKAVSFISE 1335
Query: 291 IPSQITNVVVWR 302
+P + VVWR
Sbjct: 1336 MP-LAPDPVVWR 1346
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 146/330 (44%), Gaps = 53/330 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ T+ F+++ C P G Q+H K+GF ++V+ +L +Y + G L + +F
Sbjct: 939 DNLTFPFVLKACAKTCAPKEGEQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVF 998
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+ +++V+WN +I GYS+ NR E L LF+ M A E + ++T++ V
Sbjct: 999 NEMLVKDVVSWN----------SLIGGYSQHNRLKEVLTLFKLMQA-EEVQADKVTMVKV 1047
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED----- 197
+ A G+ + Y E D+++ N LID Y + G + SA K+F
Sbjct: 1048 ISACTHLGDWSMADCMVRYIEHNHIE-VDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKN 1106
Query: 198 ------------------------TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
+ K+L+SW+++I ++ +++E F +MQ+
Sbjct: 1107 TVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQR 1166
Query: 234 VGLKPN---------RSWRIGEEGL-KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQ 283
+KP+ +G L K+ V + D LID+ + G +++
Sbjct: 1167 AKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKADTIMENSLIDMFAKCGCVQE 1226
Query: 284 AEEVASGIPSQITNVVVWRTGFLRLLINSY 313
A +V + + + T + W + L L N +
Sbjct: 1227 ALQVFTDMEEKDT--LSWNSIILGLANNGF 1254
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 116/267 (43%), Gaps = 33/267 (12%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMY-VSLGFLKDSSKLFDELPERNLVTWNVIITGLVKW 103
+LHA G + Y + + +Y + L + K+F ++ WN ++ GL +
Sbjct: 859 KLHAHLVVSGLHNCQYAMSKVIRLYALHQSDLVSAHKVFKQIESPTTFLWNTLLRGLAQS 918
Query: 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGE 163
D +F + A + +P +T VL A K + + +H +
Sbjct: 919 DAPKDAI-----------VFYKKAQEKGMKPDNLTFPFVLKACAKTCAPKEGEQMHNHVI 967
Query: 164 KRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKE 223
K GF DI VSN LI YA CG + A +F + V K++VSW ++I G++ H KE
Sbjct: 968 KLGF-LLDIFVSNSLIYLYAACGALACARSVFNEMLV--KDVVSWNSLIGGYSQHNRLKE 1024
Query: 224 AVENFERMQKVGLKPNR--------------SWRIGEEGLKFFDKMVEECEVLPDIKHYG 269
+ F+ MQ ++ ++ W + + +++ +E + D+
Sbjct: 1025 VLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRY----IEHNHIEVDVYLGN 1080
Query: 270 CLIDILERAGRLEQAEEVASGIPSQIT 296
LID R G+L+ AE+V S + + T
Sbjct: 1081 TLIDYYCRIGQLQSAEKVFSQMKDKNT 1107
>gi|414879991|tpg|DAA57122.1| TPA: putative NAC domain and pentatricopeptide repeat containing
protein [Zea mays]
Length = 868
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 140/328 (42%), Positives = 204/328 (62%), Gaps = 36/328 (10%)
Query: 7 LQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALG 66
L+ +++ H+ D+F ++F+++ C L + G QLHA+ + GF+ H YV+TAL
Sbjct: 462 LEALHLFKHARQHLADDTFVFTFVLKACAGLGWHRAGAQLHALVVQKGFEFHAYVHTALI 521
Query: 67 DMYVSLGFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTG 105
++YV L ++ K+FDE+P +N+V+WNV+ITG +V WTG
Sbjct: 522 NVYVMSRCLVEARKVFDEMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTG 581
Query: 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
+IDGY+R EAL L R M A + PSEIT+LAV+PAI G + ++++GY EK+
Sbjct: 582 LIDGYTRACLYAEALTLLRHMMAGGIS-PSEITVLAVIPAISNLGGILMGEMLNGYCEKK 640
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225
G + D V N LID YAK G + ++ K+F D +DR+NLVSWT+IISGFAMHG+ EA+
Sbjct: 641 GIMS-DARVGNSLIDLYAKIGSVQNSLKVF-DEMLDRRNLVSWTSIISGFAMHGLSVEAL 698
Query: 226 ENFERMQKVGLKPNR-----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDI 274
E F M++ G+KPNR + E+GL FF MV E + P+IKH+GC+ID+
Sbjct: 699 ELFAEMRRAGIKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDM 758
Query: 275 LERAGRLEQAEEVASGIPSQITNVVVWR 302
L RAGRL +AE++ G+P ++ NV VWR
Sbjct: 759 LGRAGRLCEAEQIIEGLPMEV-NVTVWR 785
>gi|414866863|tpg|DAA45420.1| TPA: hypothetical protein ZEAMMB73_079127 [Zea mays]
Length = 716
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 200/328 (60%), Gaps = 36/328 (10%)
Query: 7 LQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALG 66
L+ +++ H+ D+F + F+++ C L + G QLHA+ + GF+ H YV+ AL
Sbjct: 182 LEALHLFKHARQHLADDTFVFKFVLKACAGLGWHRAGAQLHALVVQKGFEFHAYVHIALI 241
Query: 67 DMYVSLGFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTG 105
++YV L ++ K+FDE+P +N+V+WNV+ITG +V WTG
Sbjct: 242 NVYVMSRCLVEARKVFDEMPVKNVVSWNVMITGFAGWDEVEYARLLFDQMPCRNVVSWTG 301
Query: 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
+IDGY+ EAL L R M A + PSEI +LAV+PAI G + ++++GY EK+
Sbjct: 302 LIDGYTHACLYAEALTLLRHMMAGGIS-PSEIIVLAVIPAISNLGGIVMGEMLNGYCEKK 360
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225
G + D+ V N LID YAK G + ++ K+F D +DR+NLVSWT+IISGFAMHG+ EA+
Sbjct: 361 GIMS-DVRVGNSLIDLYAKIGSVQNSLKVF-DEMLDRRNLVSWTSIISGFAMHGLSVEAL 418
Query: 226 ENFERMQKVGLKPNR-----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDI 274
E F M++ G+KPNR + ++GL FF MV E + P+IKH+G +ID+
Sbjct: 419 ELFAEMRRAGIKPNRITFLSVINVCSHGGLVQQGLAFFKSMVYEYNIDPEIKHFGYIIDM 478
Query: 275 LERAGRLEQAEEVASGIPSQITNVVVWR 302
L RAGRL +AE++ G+P ++ NV VWR
Sbjct: 479 LGRAGRLCEAEQIIEGLPMEV-NVTVWR 505
>gi|414866864|tpg|DAA45421.1| TPA: diphthine synthase [Zea mays]
Length = 897
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 200/328 (60%), Gaps = 36/328 (10%)
Query: 7 LQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALG 66
L+ +++ H+ D+F + F+++ C L + G QLHA+ + GF+ H YV+ AL
Sbjct: 182 LEALHLFKHARQHLADDTFVFKFVLKACAGLGWHRAGAQLHALVVQKGFEFHAYVHIALI 241
Query: 67 DMYVSLGFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTG 105
++YV L ++ K+FDE+P +N+V+WNV+ITG +V WTG
Sbjct: 242 NVYVMSRCLVEARKVFDEMPVKNVVSWNVMITGFAGWDEVEYARLLFDQMPCRNVVSWTG 301
Query: 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
+IDGY+ EAL L R M A + PSEI +LAV+PAI G + ++++GY EK+
Sbjct: 302 LIDGYTHACLYAEALTLLRHMMAGGIS-PSEIIVLAVIPAISNLGGIVMGEMLNGYCEKK 360
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225
G + D+ V N LID YAK G + ++ K+F D +DR+NLVSWT+IISGFAMHG+ EA+
Sbjct: 361 GIMS-DVRVGNSLIDLYAKIGSVQNSLKVF-DEMLDRRNLVSWTSIISGFAMHGLSVEAL 418
Query: 226 ENFERMQKVGLKPNR-----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDI 274
E F M++ G+KPNR + ++GL FF MV E + P+IKH+G +ID+
Sbjct: 419 ELFAEMRRAGIKPNRITFLSVINVCSHGGLVQQGLAFFKSMVYEYNIDPEIKHFGYIIDM 478
Query: 275 LERAGRLEQAEEVASGIPSQITNVVVWR 302
L RAGRL +AE++ G+P ++ NV VWR
Sbjct: 479 LGRAGRLCEAEQIIEGLPMEV-NVTVWR 505
>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
Length = 547
Score = 210 bits (535), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 119/325 (36%), Positives = 185/325 (56%), Gaps = 39/325 (12%)
Query: 1 FLVYKQLQQIY-IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHV 59
L YK++ ++ S +P+ P D FT+ F+I++C L NLG Q+HA K G +S++
Sbjct: 97 ILFYKEMLRLKDPESENPIFP--DRFTFPFVIKSCSGLVCYNLGKQVHAHLCKFGPKSNI 154
Query: 60 YVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG-------------------- 99
+ AL DMY L D+ K+FD + ER+ ++WN II+G
Sbjct: 155 TMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVGVGQMRKAGALFDLMPYR 214
Query: 100 -LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLI 158
+V WT +I GY+R+ +AL +FR+M EP EI+I++VLPA + G + + I
Sbjct: 215 TIVSWTAMISGYTRLGSYADALYVFRQMQIVG-VEPDEISIISVLPACAQLGALEVGKWI 273
Query: 159 HGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218
H Y ++ G + N L++ Y+KCGCI A +LF+ S + +++SW+T+I G A H
Sbjct: 274 HMYCDRNGL-LRKTSICNALMEMYSKCGCIGQAYQLFDQMS--KGDVISWSTMIGGLANH 330
Query: 219 GMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKH 267
G +EA+E F+RM+K ++PN +G EGL +FD M ++ + P+++H
Sbjct: 331 GKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLAYFDSMSKDYHIEPEVEH 390
Query: 268 YGCLIDILERAGRLEQAEEVASGIP 292
YGCL+DIL RAGRL QA +V +P
Sbjct: 391 YGCLVDILGRAGRLSQALDVIEKMP 415
>gi|255551084|ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544410|gb|EEF45931.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 119/322 (36%), Positives = 176/322 (54%), Gaps = 37/322 (11%)
Query: 4 YKQLQQIYIHSHSPLPPLF-DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
YKQ+ + Y +S + + D FT+ F+++ C L NLG Q+HA F K G +SH+
Sbjct: 74 YKQMLREYRNSQTSEDLILPDEFTFPFVVKACARLGLHNLGKQVHAQFFKFGKKSHLITE 133
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG---------------------LV 101
AL DMY L D+ LFDE+ ER ++WN II+G +V
Sbjct: 134 NALIDMYTKCDNLLDAHNLFDEMHERGAISWNGIISGHVRLGQMRRARALFDEMPNRTIV 193
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
WT II GY+R+ +AL +FR M EP E +I++VLPA K G + + IH +
Sbjct: 194 SWTAIISGYTRIGSYIDALDVFREMQIAG-IEPDEASIISVLPACAKLGALETGKWIHMF 252
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
+ G + N LI+ Y KCGCI A +LF+ + ++++SW+T+I G A HG
Sbjct: 253 CARNGL-LRRTCICNALIEMYTKCGCIDQACQLFD--QMRGRDVISWSTMIGGLANHGKV 309
Query: 222 KEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGC 270
+EA+ FERM++ +KPN +G EEGL +FD M ++ + P+I+HYG
Sbjct: 310 REAIAIFERMKQTNIKPNGITFVGLLSACAHAGFWEEGLMYFDTMKKDFHIEPEIEHYGS 369
Query: 271 LIDILERAGRLEQAEEVASGIP 292
L+D+L RAGRL QA ++ +P
Sbjct: 370 LVDLLGRAGRLSQALDIVEKMP 391
>gi|242059059|ref|XP_002458675.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
gi|241930650|gb|EES03795.1| hypothetical protein SORBIDRAFT_03g037910 [Sorghum bicolor]
Length = 894
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/250 (45%), Positives = 158/250 (63%), Gaps = 36/250 (14%)
Query: 85 LPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALALF 123
+P +N+V+WNV+ITG +V WTG+IDGY+R EA+ALF
Sbjct: 1 MPMKNVVSWNVVITGFAGWGEIEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEAVALF 60
Query: 124 RRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183
R M A + PSEIT+LAV+PAI G + +++HGY K+G + D V N LID YA
Sbjct: 61 RHMMAGGIS-PSEITVLAVVPAISNLGGILMGEMLHGYCVKKGIMS-DARVGNSLIDLYA 118
Query: 184 KCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR--- 240
K G + ++ K+F D +DR+NLVSWT+IISGFAMHG+ EA+E F M++ G++PNR
Sbjct: 119 KIGSVQNSLKVF-DEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIRPNRITF 177
Query: 241 --------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+ E+GL FF MV E + P+IKH+GC+ID+L RAGRL +AE++ G+P
Sbjct: 178 LSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLP 237
Query: 293 SQITNVVVWR 302
++ NV+VWR
Sbjct: 238 VEV-NVIVWR 246
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 151/312 (48%), Gaps = 37/312 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T +I C L ++ + + + VY+ L D Y +G L+ + K+F
Sbjct: 510 DKVTMVKVISACTHLGDWSMADCMVRYIERNHIEVDVYLGNTLIDYYCRIGQLQSAEKVF 569
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
++ ++N VT N +I L+ W+ +I YS+ + +++L
Sbjct: 570 SQMKDKNTVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLE 629
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LFR+M + +P + I +VL A G + + IH Y + D + N LID
Sbjct: 630 LFRQMQRAK-VKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKT-DTIMENSLIDM 687
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR- 240
+AKCGC+ A ++F T ++ K+ +SW +II G A +G EA+ F M G +PN
Sbjct: 688 FAKCGCMQEALQVF--TEMEEKDTLSWNSIILGLANNGFEDEALNIFYSMLTEGPRPNEV 745
Query: 241 ----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+ R+ +EGL F++M + P +KHYGC++ IL RAG+LE+A+ +
Sbjct: 746 TFLGVLIACANKRLVQEGLDHFERMKTVHNLEPQMKHYGCVVGILSRAGQLEKAKNFINE 805
Query: 291 IPSQITNVVVWR 302
+P + VVWR
Sbjct: 806 MPLA-PDPVVWR 816
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 148/330 (44%), Gaps = 53/330 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ T+ F+++ C P G Q+H+ K+GF ++V+ +L +Y + G L + +F
Sbjct: 409 DNMTFPFVLKACAKTYAPKEGEQMHSHVIKLGFLLDIFVSNSLIHLYAACGDLVCARSIF 468
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ +++V+WN +I GYS+ NR E LALF M A E + ++T++ V
Sbjct: 469 DEMLVKDVVSWN----------SLIGGYSQRNRFKEVLALFELMQA-EEVQADKVTMVKV 517
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT---- 198
+ A G+ + Y E R D+++ N LID Y + G + SA K+F
Sbjct: 518 ISACTHLGDWSMADCMVRYIE-RNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKN 576
Query: 199 -------------------------SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
+ K+L+SW+++I ++ +++E F +MQ+
Sbjct: 577 TVTLNAMIHAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQR 636
Query: 234 VGLKPN---------RSWRIGEEGL-KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQ 283
+KP+ +G L K+ V + D LID+ + G +++
Sbjct: 637 AKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKTDTIMENSLIDMFAKCGCMQE 696
Query: 284 AEEVASGIPSQITNVVVWRTGFLRLLINSY 313
A +V + + + T + W + L L N +
Sbjct: 697 ALQVFTEMEEKDT--LSWNSIILGLANNGF 724
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 24/200 (12%)
Query: 42 LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV 101
+G LH K G S V +L D+Y +G +++S K+FDE+ +R LV
Sbjct: 90 MGEMLHGYCVKKGIMSDARVGNSLIDLYAKIGSVQNSLKVFDEMLDRR---------NLV 140
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNC-----Q 156
WT II G++ S EAL LF M P+ IT L+V+ A G V
Sbjct: 141 SWTSIISGFAMHGLSVEALELFAEMRRAG-IRPNRITFLSVINACSHGGLVEQGLAFFKS 199
Query: 157 LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFA 216
+++ Y F C+ID + G + A ++ E V+ N++ W ++ +
Sbjct: 200 MVYEYNIDPEIKHF-----GCIIDMLGRAGRLCEAEQIIEGLPVE-VNVIVWRILLGCCS 253
Query: 217 MHG---MGKEAVENFERMQK 233
+G MGK A++ +++
Sbjct: 254 KYGEVEMGKRAIKMISDLER 273
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 117/263 (44%), Gaps = 39/263 (14%)
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
+ K+F+++ WN ++ GL + D +F + A + +P +
Sbjct: 363 AHKVFEQIESPTTFLWNTLLRGLAQSDAPKDAI-----------VFYKKAQEKGMKPDNM 411
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
T VL A K + + +H + K GF DI VSN LI YA CG + A +F++
Sbjct: 412 TFPFVLKACAKTYAPKEGEQMHSHVIKLGF-LLDIFVSNSLIHLYAACGDLVCARSIFDE 470
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR--------------SWR 243
V K++VSW ++I G++ KE + FE MQ ++ ++ W
Sbjct: 471 MLV--KDVVSWNSLIGGYSQRNRFKEVLALFELMQAEEVQADKVTMVKVISACTHLGDWS 528
Query: 244 IGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ + +++ +E + D+ LID R G+L+ AE+V S + + T
Sbjct: 529 MADCMVRY----IERNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDK-------NT 577
Query: 304 GFLRLLINSYFFSPITLNSQRLF 326
L +I++Y ++++++F
Sbjct: 578 VTLNAMIHAYAKGGNLVSAKKIF 600
>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/331 (35%), Positives = 184/331 (55%), Gaps = 40/331 (12%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
VYKQ+ HSH P D FT+ F++++C L +LG Q+H K G +S+ V
Sbjct: 99 VYKQMLG---HSHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVE 155
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK-------------------- 102
+L +MYV L D+ K+F+E+ ER+ V+WN +I+G V+
Sbjct: 156 NSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIF 215
Query: 103 -WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
WT I+ GY+R+ +AL FRRM EP EI++++VLPA + G + + IH Y
Sbjct: 216 SWTAIVSGYARIGCYADALEFFRRMQMVG-IEPDEISLVSVLPACAQLGALELGKWIHFY 274
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
+K GF +I V N LI+ YAKCG I +LF+ ++ ++++SW+T+I G A HG
Sbjct: 275 ADKAGF-LRNICVCNALIEMYAKCGSIDEGRRLFD--QMNERDVISWSTMIVGLANHGRA 331
Query: 222 KEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGC 270
EA+E F+ MQK ++PN +G EGL++F+ M + + P ++HYGC
Sbjct: 332 HEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGC 391
Query: 271 LIDILERAGRLEQAEEVASGIPSQITNVVVW 301
L+++L +GRL+QA E+ +P + + +W
Sbjct: 392 LVNLLGLSGRLDQALELIKKMPMK-PDSAIW 421
>gi|15225375|ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g20540
gi|4586036|gb|AAD25654.1| unknown protein [Arabidopsis thaliana]
gi|67633530|gb|AAY78689.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251931|gb|AEC07025.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/322 (36%), Positives = 179/322 (55%), Gaps = 43/322 (13%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
+YKQL + LP D FT+ F+ ++C +L LG Q+H K G + HV
Sbjct: 95 IYKQL----LRKSFELP---DRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTE 147
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG---------------------LV 101
AL DMY+ L D+ K+FDE+ ER++++WN +++G +V
Sbjct: 148 NALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIV 207
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
WT +I GY+ + EA+ FR M EP EI++++VLP+ + G + + IH Y
Sbjct: 208 SWTAMISGYTGIGCYVEAMDFFREMQLAG-IEPDEISLISVLPSCAQLGSLELGKWIHLY 266
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
E+RGF V N LI+ Y+KCG I A +LF ++ K+++SW+T+ISG+A HG
Sbjct: 267 AERRGFLK-QTGVCNALIEMYSKCGVISQAIQLF--GQMEGKDVISWSTMISGYAYHGNA 323
Query: 222 KEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGC 270
A+E F MQ+ +KPN +G +EGL++FD M ++ ++ P I+HYGC
Sbjct: 324 HGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGC 383
Query: 271 LIDILERAGRLEQAEEVASGIP 292
LID+L RAG+LE+A E+ +P
Sbjct: 384 LIDVLARAGKLERAVEITKTMP 405
>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 568
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 171/316 (54%), Gaps = 38/316 (12%)
Query: 9 QIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDM 68
Q+ HS + + P D FT+ F+I++C + LG Q+H + K G H AL DM
Sbjct: 98 QMLTHSTNSVFP--DKFTFPFVIKSCTGILCHRLGMQVHGLVYKFGADFHCITENALIDM 155
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK---------------------WTGII 107
Y G L ++ K+F+E+ R++++WN +I G VK WT +I
Sbjct: 156 YTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMI 215
Query: 108 DGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF 167
GY RM +AL +FR M EP EI+I+AVLPA + G + + IH Y +K GF
Sbjct: 216 TGYGRMGCYGDALDVFREMQMVG-IEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGF 274
Query: 168 NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVEN 227
+ N LI+ YAKCGCI A LF+ + K+++SW+T+I G A HG G EA++
Sbjct: 275 -LRKTGICNALIEMYAKCGCIDEAWNLFD--QLVEKDVISWSTMIGGLANHGKGYEAIQL 331
Query: 228 FERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILE 276
FE M KV + PN +G +EGLK+FD M + P+I+HYGCLID+L
Sbjct: 332 FEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEHYGCLIDLLG 391
Query: 277 RAGRLEQAEEVASGIP 292
R+G L QA + S +P
Sbjct: 392 RSGCLGQALDTISKMP 407
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 95/227 (41%), Gaps = 42/227 (18%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
++HA K+ ++ T + D +LG + ++ LF +L N+ T+N
Sbjct: 28 KIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLLHPNIFTYN---------- 77
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTE--PSEITILAVLPAIWKNGEVRNCQLIHGYG 162
II Y+ + A+++F +M P + T V+ + R +HG
Sbjct: 78 AIIRTYAHNRHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGILCHRLGMQVHGLV 137
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS----------------------- 199
K G + F N LID Y K G + +A K+FE+ S
Sbjct: 138 YKFGAD-FHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSA 196
Query: 200 ------VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+ + +VSWTT+I+G+ G +A++ F MQ VG++P+
Sbjct: 197 RELFDDMPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDE 243
>gi|297832654|ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330049|gb|EFH60468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 534
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 117/322 (36%), Positives = 176/322 (54%), Gaps = 43/322 (13%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
+YKQL + I P D FT+ F+ ++C +L LG Q+H K G + HV
Sbjct: 95 IYKQLLRKTIE----FP---DRFTFPFMFKSCASLGSCYLGKQVHGHLYKFGPRFHVVTE 147
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG---------------------LV 101
AL DMY+ L D+ K+FDE+ ER++++WN +++G +V
Sbjct: 148 NALIDMYMKFDDLVDAHKVFDEMSERDVISWNSLLSGYARLGQMKKAKGLFHLMIDKTIV 207
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
WT +I GY+ + EA+ FR M EP EI++++VLP+ G + + IH Y
Sbjct: 208 SWTAMISGYTGIGCYVEAMDFFREMQLAG-IEPDEISLISVLPSCAHLGSLELGKWIHMY 266
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
E+RG V N LI+ Y+KCG + A +LFE T K+++SW+T+ISG+A HG
Sbjct: 267 AERRGLLK-QTGVCNALIEMYSKCGMLSQAIQLFEQTK--GKDVISWSTMISGYAYHGNA 323
Query: 222 KEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGC 270
A E F MQ+ +KPN +G ++GLK+FD M ++ ++ P I+HYGC
Sbjct: 324 HRAFETFIEMQRAKVKPNGITFLGLLSACSHVGLWQQGLKYFDMMRQDYQIEPKIEHYGC 383
Query: 271 LIDILERAGRLEQAEEVASGIP 292
LID+L RAG+LE+A E+ +P
Sbjct: 384 LIDVLARAGKLERAVEITKTMP 405
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 103/246 (41%), Gaps = 35/246 (14%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
++HA G ++ T + D+ LG + +++LF+++ N+ +N
Sbjct: 28 KIHACIIVHGLSQSSFMVTKMVDLCDKLGDMDYATRLFNQVSNPNVFLYN---------- 77
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
II Y+ + + + +++++ P T + + G + +HG+ K
Sbjct: 78 SIIRAYTHNSLYCDVIRIYKQLLRKTIEFPDRFTFPFMFKSCASLGSCYLGKQVHGHLYK 137
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
G F + N LID Y K + A K+F++ S ++++SW +++SG+A G K+A
Sbjct: 138 FG-PRFHVVTENALIDMYMKFDDLVDAHKVFDEMS--ERDVISWNSLLSGYARLGQMKKA 194
Query: 225 VENFERMQKVGLKPNRSWR--------IG--EEGLKFFDKM---------VEECEVLPDI 265
F M K SW IG E + FF +M + VLP
Sbjct: 195 KGLFHLMID---KTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSC 251
Query: 266 KHYGCL 271
H G L
Sbjct: 252 AHLGSL 257
>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
Length = 514
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 110/313 (35%), Positives = 180/313 (57%), Gaps = 37/313 (11%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D+FT SF+++ C+ LS G +H +F K+GF S++++ + ++Y G + D+
Sbjct: 7 LPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAML 66
Query: 81 LFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEA 119
LF+++P+R+ VTWN++I L K WT +I G+ + + NEA
Sbjct: 67 LFEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEA 126
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
+ LF ++ E P+E+T+++VL A G++ +++H Y K GF ++HV N LI
Sbjct: 127 IDLFMKLED-EAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKR-NVHVCNTLI 184
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D Y KCGC+ +A ++F + ++ + +VSW+ +I+G AMHG +EA+ F M K+G+KPN
Sbjct: 185 DMYVKCGCLENARRVFYE--MEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPN 242
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
IG +EG +FF M + V+P I+HYGC++D+ RAG LE+A E
Sbjct: 243 GVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFI 302
Query: 289 SGIPSQITNVVVW 301
+P + N VVW
Sbjct: 303 LSMPIK-PNGVVW 314
>gi|297793123|ref|XP_002864446.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310281|gb|EFH40705.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 531
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 175/313 (55%), Gaps = 39/313 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FT+ F+++ V +S G Q+H GF S V+V T L MY S G L D+ K+F
Sbjct: 115 DTFTFPFVLKIVVRVSDVWFGRQVHGQAVVFGFDSSVHVVTGLIQMYSSCGGLGDARKVF 174
Query: 83 DELPERNLVTWNVIITG-----------------------LVKWTGIIDGYSRMNRSNEA 119
DE+ R++ WN ++ G V WT +I GY+R R++EA
Sbjct: 175 DEMRVRDVNVWNALLAGYGKVGEMDEARGLLEMMPCWVRNAVSWTCVISGYARSGRASEA 234
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
+ +F+RM E +P E+T+LAVL A G + + I Y + RG N + ++N +I
Sbjct: 235 IEVFQRMLM-ENVDPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNR-AVSLNNAVI 292
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D YAK G I A ++FE SV+ +N+V+WTTII+G A HG G EA+ F+RM K G+KPN
Sbjct: 293 DMYAKSGNITKALEVFE--SVNERNVVTWTTIITGLATHGHGAEALVMFDRMVKAGVKPN 350
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
I + G +FF+ M + + P+I+HYGC+ID+L RAG+L +AEEV
Sbjct: 351 DVTFIAILSACSHVGWVDLGNRFFNSMRSKYGINPNIEHYGCMIDLLGRAGKLREAEEVI 410
Query: 289 SGIPSQITNVVVW 301
+P + +N +W
Sbjct: 411 KSMPFE-SNAAIW 422
>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 116/319 (36%), Positives = 172/319 (53%), Gaps = 41/319 (12%)
Query: 8 QQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGD 67
Q + S SP D FT+ F+I++C L LG Q+HA K G ++H AL D
Sbjct: 95 QMLTTKSASP-----DKFTFPFVIKSCAGLLCRRLGQQVHAHVCKFGPKTHAITENALID 149
Query: 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTGI 106
MY G + + ++++E+ ER+ V+WN +I+G +V WT +
Sbjct: 150 MYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRTIVSWTTM 209
Query: 107 IDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRG 166
I+GY+R +AL +FR M EP EI++++VLPA + G + + IH Y EK G
Sbjct: 210 INGYARGGCYADALGIFREMQVVG-IEPDEISVISVLPACAQLGALEVGKWIHKYSEKSG 268
Query: 167 FNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVE 226
F + V N L++ YAKCGCI A LF + K+++SW+T+I G A HG G A+
Sbjct: 269 FLK-NAGVFNALVEMYAKCGCIDEAWGLF--NQMIEKDVISWSTMIGGLANHGKGYAAIR 325
Query: 227 NFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDIL 275
FE MQK G+ PN +G EGL++FD M + + P I+HYGCL+D+L
Sbjct: 326 VFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQIEHYGCLVDLL 385
Query: 276 ERAGRLEQAEEVASGIPSQ 294
R+G++EQA + +P Q
Sbjct: 386 GRSGQVEQALDTILKMPMQ 404
>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
Length = 606
Score = 198 bits (504), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 110/311 (35%), Positives = 174/311 (55%), Gaps = 37/311 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FT S ++R C+ L + G LH V KVGF+S++Y+ + +Y S G + ++ LF
Sbjct: 127 DTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLF 186
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
+++P+R++VTWN++I L+K WT +I GY + ++ EA+
Sbjct: 187 EKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIH 246
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF +M + +E+T++AVL A G + IH Y + GF ++ +SN LID
Sbjct: 247 LFAKMEEAG-VKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKR-NVRISNTLIDM 304
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
Y KCGC+ A K+FE+ ++ + +VSW+ +I G AMHG +EA+ F M +VG++PN
Sbjct: 305 YVKCGCLEEACKVFEE--MEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGV 362
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
IG EG +FF M + ++P I+HYGC++D+L RAG L +A E
Sbjct: 363 TFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILN 422
Query: 291 IPSQITNVVVW 301
+P + N VVW
Sbjct: 423 MPMK-PNGVVW 432
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 31/166 (18%)
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
W + + + +A+ LF R+ + P T +VL A ++ N +++HG
Sbjct: 96 WNSCLKALAEGDSPIDAIMLFYRLRQYDVC-PDTFTCSSVLRACLNLLDLSNGRILHGVV 154
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED------------------------- 197
EK GF + ++++ N ++ YA CG + A LFE
Sbjct: 155 EKVGFRS-NLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGA 213
Query: 198 ----TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+ + +N+ SWT++I+G+ G KEA+ F +M++ G+K N
Sbjct: 214 YDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCN 259
>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 176/316 (55%), Gaps = 38/316 (12%)
Query: 11 YIHSHSPLPPLF------------DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSH 58
Y S +P+P L D+ TY FL++ L G ++H++ + GF+S
Sbjct: 115 YAESENPMPALELYRQMHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESL 174
Query: 59 VYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNE 118
V+V L MY + G + + KLF+ + ERNLVTWN +I+GY+ R NE
Sbjct: 175 VFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWN----------SVINGYALNGRPNE 224
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
AL LFR M EP T++++L A + G + + H Y K G + ++H N L
Sbjct: 225 ALTLFREM-GLRGVEPDGFTMVSLLSACAELGALALGRRAHVYMVKVGLDG-NLHAGNAL 282
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
+D YAKCG I A K+F++ ++ K++VSWT++I G A++G GKEA+E F+ +++ GL P
Sbjct: 283 LDLYAKCGSIRQAHKVFDE--MEEKSVVSWTSLIVGLAVNGFGKEALELFKELERKGLMP 340
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ +G +EG +F +M EE ++P I+HYGC++D+L RAG ++QA E
Sbjct: 341 SEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQAHEF 400
Query: 288 ASGIPSQITNVVVWRT 303
+P Q N VVWRT
Sbjct: 401 IQNMPMQ-PNAVVWRT 415
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 81/298 (27%), Positives = 136/298 (45%), Gaps = 46/298 (15%)
Query: 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP 86
++F IR V L+ P++G L +F+ + F S + + ++F ++
Sbjct: 60 HAFSIRHGVPLTNPDMGKYL--IFTLLSFCSP----------------MSYAHQIFSQIQ 101
Query: 87 ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM-AACEYTEPSEITILAVLPA 145
N+ TWN +I GY+ AL L+R+M +C EP T +L A
Sbjct: 102 NPNIFTWNTMIR----------GYAESENPMPALELYRQMHVSC--IEPDTHTYPFLLKA 149
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
I K +VR + +H + GF + + V N L+ YA CG SA KLFE + +NL
Sbjct: 150 IAKLMDVREGEKVHSIAIRNGFESL-VFVQNTLVHMYAACGHAESAHKLFELMA--ERNL 206
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI------GEEGLKFFDKMVEEC 259
V+W ++I+G+A++G EA+ F M G++P+ + E G +
Sbjct: 207 VTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVY 266
Query: 260 EV---LPDIKHYG-CLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSY 313
V L H G L+D+ + G + QA +V + + +VV W + + L +N +
Sbjct: 267 MVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEK--SVVSWTSLIVGLAVNGF 322
>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 632
Score = 198 bits (503), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 110/311 (35%), Positives = 174/311 (55%), Gaps = 37/311 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FT S ++R C+ L + G LH V KVGF+S++Y+ + +Y S G + ++ LF
Sbjct: 127 DTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLF 186
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
+++P+R++VTWN++I L+K WT +I GY + ++ EA+
Sbjct: 187 EKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIH 246
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF +M + +E+T++AVL A G + IH Y + GF ++ +SN LID
Sbjct: 247 LFAKMEEAG-VKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKR-NVRISNTLIDM 304
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
Y KCGC+ A K+FE+ ++ + +VSW+ +I G AMHG +EA+ F M +VG++PN
Sbjct: 305 YVKCGCLEEACKVFEE--MEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGV 362
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
IG EG +FF M + ++P I+HYGC++D+L RAG L +A E
Sbjct: 363 TFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILN 422
Query: 291 IPSQITNVVVW 301
+P + N VVW
Sbjct: 423 MPMK-PNGVVW 432
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 75/166 (45%), Gaps = 31/166 (18%)
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
W + + + +A+ LF R+ + P T +VL A ++ N +++HG
Sbjct: 96 WNSCLKALAEGDSPIDAIMLFYRLRQYDVC-PDTFTCSSVLRACLNLLDLSNGRILHGVV 154
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED------------------------- 197
EK GF + ++++ N ++ YA CG + A LFE
Sbjct: 155 EKVGFRS-NLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGA 213
Query: 198 ----TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+ + +N+ SWT++I+G+ G KEA+ F +M++ G+K N
Sbjct: 214 YDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVKCN 259
>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 112/324 (34%), Positives = 181/324 (55%), Gaps = 39/324 (12%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
VYKQ+ H +P+ P D FT+ F++++C L +LG Q+H K G +S+ V
Sbjct: 99 VYKQMLG-NPHGENPIFP--DKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVE 155
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK-------------------- 102
+L +MYV L D+ ++F+E+ ER+ V+WN +I+G V+
Sbjct: 156 NSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEEMQDKTIF 215
Query: 103 -WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
WT I+ GY+R+ +AL FRRM EP EI++++VLP + G + + IH Y
Sbjct: 216 SWTAIVSGYARIGCYADALEFFRRMQMVG-IEPDEISLVSVLPDCAQLGALELGKWIHIY 274
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
+K GF +I V N LI+ YAKCG I +LF+ + ++++SW+T+I G A HG
Sbjct: 275 ADKAGF-LRNICVCNALIEMYAKCGSIDQGRRLFD--QMKERDVISWSTMIVGLANHGRA 331
Query: 222 KEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGC 270
+EA+E F+ MQK ++P+ +G EGL++F+ M + + P ++HYGC
Sbjct: 332 REAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGC 391
Query: 271 LIDILERAGRLEQAEEVASGIPSQ 294
L+++L +GRL+QA E+ +P +
Sbjct: 392 LVNLLGLSGRLDQALELVKKMPRK 415
>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Vitis vinifera]
Length = 515
Score = 194 bits (493), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 110/317 (34%), Positives = 174/317 (54%), Gaps = 36/317 (11%)
Query: 8 QQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGD 67
+Q+ HSH P D FT+ F+++ C L NLG Q+H K G +S+ + +L +
Sbjct: 75 KQMLGHSHGENPXFPDKFTFPFVVKXCAGLMCYNLGKQVHGHAFKFGPKSNTVIENSLVE 134
Query: 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK---------------------WTGI 106
MYV L D+ ++F+E+ ER+ V+WN +I+G V+ WT I
Sbjct: 135 MYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARAIFEELQDKTIFSWTAI 194
Query: 107 IDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRG 166
+ GY+R+ AL FRRM + E EI++++VLPA + G + + IH Y +K G
Sbjct: 195 VSGYARIGCHAVALEFFRRMQMVD-IELDEISLVSVLPACAQLGALELGKWIHIYADKAG 253
Query: 167 FNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVE 226
F DI V N LI+ YAK G + +LF ++ ++++SW+T+I G A HG +EA+E
Sbjct: 254 F-LRDICVCNALIEVYAKRGSMDEGRRLFH--KMNERDVISWSTMIVGLANHGRAREAIE 310
Query: 227 NFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDIL 275
F+ MQK ++PN +G EGL +F+ M + + P ++HYGCL+++L
Sbjct: 311 LFQEMQKAKVEPNIITFVGLLSACAHAGLLNEGLGYFESMERDDNIEPGVEHYGCLVNLL 370
Query: 276 ERAGRLEQAEEVASGIP 292
+GRL+QA E+ +P
Sbjct: 371 GLSGRLDQALELIKKMP 387
>gi|242073754|ref|XP_002446813.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
gi|241937996|gb|EES11141.1| hypothetical protein SORBIDRAFT_06g023080 [Sorghum bicolor]
Length = 547
Score = 193 bits (491), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 170/303 (56%), Gaps = 37/303 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FTY FL++ C L+ LG Q+HA ++ G +SH V +L +MY G L + K+F
Sbjct: 116 DRFTYPFLLKACGGLAASQLGRQVHAHVARSGCESHAIVQNSLIEMYTRCGDLSLARKVF 175
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
D + E++ V+WN +I+ +V WT ++ GY+ + A+
Sbjct: 176 DGMREKDAVSWNTLISAHARMGQMRKARELFHSMPDKTVVSWTALVSGYTAVGDFAGAVE 235
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
+FR+M E EP +++I+AVLPA + G + + I+ Y K G I++ N L++
Sbjct: 236 VFRQMQM-EGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNKHGMLG-KIYICNALMEM 293
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-LKPNR 240
YAKCGCI A +LF S K+++SW+T I G A HG +EAV+ FE M + G + PN
Sbjct: 294 YAKCGCIEEALQLFHGMS--EKDVISWSTAIGGLAAHGRAREAVKLFEVMDREGRVMPNG 351
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
+G +EGL++FD+M EE V P ++HYGC++D+L R+GR+++A +
Sbjct: 352 ITFVGLLSACSHAGLLDEGLRYFDRMKEEYGVEPSVEHYGCVVDLLGRSGRIQRALDTIG 411
Query: 290 GIP 292
G+P
Sbjct: 412 GMP 414
>gi|15241180|ref|NP_200442.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171630|sp|Q9FMA1.1|PP433_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g56310
gi|10177829|dbj|BAB11258.1| unnamed protein product [Arabidopsis thaliana]
gi|332009364|gb|AED96747.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 530
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/313 (36%), Positives = 170/313 (54%), Gaps = 39/313 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FT+ F+++ V +S G Q+H GF S V+V T L MY S G L D+ K+F
Sbjct: 115 DTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMF 174
Query: 83 DELPERNLVTWNVIITGL-----------------------VKWTGIIDGYSRMNRSNEA 119
DE+ +++ WN ++ G V WT +I GY++ R++EA
Sbjct: 175 DEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEA 234
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
+ +F+RM E EP E+T+LAVL A G + + I Y + RG N + ++N +I
Sbjct: 235 IEVFQRMLM-ENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNR-AVSLNNAVI 292
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D YAK G I A +FE V+ +N+V+WTTII+G A HG G EA+ F RM K G++PN
Sbjct: 293 DMYAKSGNITKALDVFE--CVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPN 350
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
I + G + F+ M + + P+I+HYGC+ID+L RAG+L +A+EV
Sbjct: 351 DVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVI 410
Query: 289 SGIPSQITNVVVW 301
+P + N +W
Sbjct: 411 KSMPFK-ANAAIW 422
>gi|223946989|gb|ACN27578.1| unknown [Zea mays]
gi|414586292|tpg|DAA36863.1| TPA: hypothetical protein ZEAMMB73_743648 [Zea mays]
Length = 545
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 108/323 (33%), Positives = 175/323 (54%), Gaps = 37/323 (11%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
VY ++ + H + + D FTY FL++ C L+ LG Q+HA ++ G +SH V
Sbjct: 95 VYVRMLRCLPHPSTAGFSVGDRFTYPFLLKACGALAASRLGRQVHAHVARSGCESHAVVQ 154
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG---------------------LV 101
+L +MY G L + K FD + E+++V+WN +I+ +V
Sbjct: 155 NSLIEMYTRCGDLSTARKAFDGMREKDVVSWNTLISAHARMGQMRRARELFYSMPDKTVV 214
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
WT ++ GY+ + A+ +FR M E EP +++I+AVLPA + G + + I+ Y
Sbjct: 215 SWTALVSGYTAVGDFTGAVEVFRLMQM-EGFEPDDVSIVAVLPACAQLGALELGRWIYAY 273
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
K G +++ N L++ YAKCGCI A +LF S K+++SW+T I G A HG
Sbjct: 274 CSKHGMLG-KVYICNALMEMYAKCGCIEEALQLFHGMS--EKDVISWSTAIGGLAAHGRA 330
Query: 222 KEAVENFERMQKVG-LKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYG 269
+EAV FE M + G + PN +G +EGL++ D+M E+ V P ++HYG
Sbjct: 331 REAVRLFEVMDREGRVMPNGITFVGLLSACSHAGLVDEGLRYLDQMKEDYGVEPGVEHYG 390
Query: 270 CLIDILERAGRLEQAEEVASGIP 292
C++D+L R+GR+++A + G+P
Sbjct: 391 CVVDLLGRSGRIQRALDTIRGMP 413
>gi|147774372|emb|CAN72397.1| hypothetical protein VITISV_041201 [Vitis vinifera]
Length = 576
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/312 (34%), Positives = 175/312 (56%), Gaps = 37/312 (11%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD+++ F+++ V L ++G Q+H G S ++V TAL MY S G + ++ +L
Sbjct: 137 FDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQL 196
Query: 82 FDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEAL 120
FD + R++ WN ++ G K WT +I GY++M+R NEA+
Sbjct: 197 FDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAI 256
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
+FRRM E EP EI +LA L A G + + IH Y +K G + + ++N LID
Sbjct: 257 TMFRRMQL-EEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKI-VPLNNALID 314
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
YAKCG I A ++F++ ++ K++++WT++I G A+HG+G+EA+E F M++ +KPN
Sbjct: 315 MYAKCGKIEKALEVFKN--MEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNE 372
Query: 241 ---------SWRIG--EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
+G E G +F M + + P I+HYGC+ID+L RAG L++A+E+
Sbjct: 373 ITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVR 432
Query: 290 GIPSQITNVVVW 301
G+P + N +W
Sbjct: 433 GMPFE-ANAPIW 443
>gi|225435834|ref|XP_002283791.1| PREDICTED: pentatricopeptide repeat-containing protein At5g56310
[Vitis vinifera]
Length = 576
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/312 (34%), Positives = 175/312 (56%), Gaps = 37/312 (11%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD+++ F+++ V L ++G Q+H G S ++V TAL MY S G + ++ +L
Sbjct: 137 FDTYSLPFVLKAVVRLLAIHVGRQIHCQAIGTGLVSDIHVVTALIQMYSSCGCVSEARQL 196
Query: 82 FDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEAL 120
FD + R++ WN ++ G K WT +I GY++M+R NEA+
Sbjct: 197 FDGVCFRDVAFWNAMVAGYAKVGDVDNARHLFERMPERNVISWTAVIAGYAQMDRPNEAI 256
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
+FRRM E EP EI +LA L A G + + IH Y +K G + + ++N LID
Sbjct: 257 TMFRRMQL-EEVEPDEIAMLAALSACAHLGALELGEWIHNYIDKHGLSKI-VPLNNALID 314
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
YAKCG I A ++F++ ++ K++++WT++I G A+HG+G+EA+E F M++ +KPN
Sbjct: 315 MYAKCGKIEKALEVFKN--MEHKSVITWTSMIDGLALHGLGREALEMFSCMERNRIKPNE 372
Query: 241 ---------SWRIG--EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
+G E G +F M + + P I+HYGC+ID+L RAG L++A+E+
Sbjct: 373 ITFVAILSACCHVGLVEMGRWYFKCMGTKYGIKPKIQHYGCMIDLLGRAGFLQEAQELVR 432
Query: 290 GIPSQITNVVVW 301
G+P + N +W
Sbjct: 433 GMPFE-ANAPIW 443
>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Glycine max]
Length = 512
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 109/325 (33%), Positives = 171/325 (52%), Gaps = 40/325 (12%)
Query: 9 QIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDM 68
Q+ +HS P + T++FL C +LS P+LG LH F K GF+ ++ TAL DM
Sbjct: 73 QMLLHSFLP-----NQHTFNFLFSACTSLSSPSLGQMLHTHFIKSGFEPDLFAATALLDM 127
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTGII 107
Y +G L+ + KLFD++P R + TWN ++ G +V WT +I
Sbjct: 128 YTKVGTLELARKLFDQMPVRGVPTWNAMMAGHARFGDMDVALELFRLMPSRNVVSWTTMI 187
Query: 108 DGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF 167
GYSR + EAL LF RM + P+ +T+ ++ PA G + Q + Y K GF
Sbjct: 188 SGYSRSKKYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALEIGQRVEAYARKNGF 247
Query: 168 NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVEN 227
+++VSN +++ YAKCG I A K+F + R NL SW ++I G A+HG + ++
Sbjct: 248 FK-NLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLR-NLCSWNSMIMGLAVHGECCKTLKL 305
Query: 228 FERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILE 276
+++M G P+ +G E+G F M ++P ++HYGC++D+L
Sbjct: 306 YDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNIIPKLEHYGCMVDLLG 365
Query: 277 RAGRLEQAEEVASGIPSQITNVVVW 301
RAG+L +A EV +P + + V+W
Sbjct: 366 RAGQLREAYEVIQRMPMK-PDSVIW 389
>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 591
Score = 188 bits (477), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 113/314 (35%), Positives = 178/314 (56%), Gaps = 34/314 (10%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
FL Y+Q+ S + P D+ TY FL++ G +H+V + GF+S V+
Sbjct: 103 FLFYRQMVV------SCVEP--DTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVF 154
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
V +L +Y + G + + K+F+ + ER+LV WN +I+G++ R NEAL
Sbjct: 155 VQNSLLHIYAACGDTESAYKVFELMKERDLVAWN----------SMINGFALNGRPNEAL 204
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LFR M+ E EP T++++L A + G + + +H Y K G + + HV+N L+D
Sbjct: 205 TLFREMSV-EGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSK-NSHVTNSLLD 262
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
YAKCG I A ++F + S +N VSWT++I G A++G G+EA+E F+ M+ GL P+
Sbjct: 263 LYAKCGAIREAQRVFSEMS--ERNAVSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSE 320
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
+G +EG ++F +M EEC ++P I+HYGC++D+L RAG ++QA E
Sbjct: 321 ITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQ 380
Query: 290 GIPSQITNVVVWRT 303
+P Q N V+WRT
Sbjct: 381 NMPVQ-PNAVIWRT 393
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/300 (26%), Positives = 137/300 (45%), Gaps = 50/300 (16%)
Query: 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP 86
++F IR V+L+ P++G H +F+ V + + + +F +
Sbjct: 38 HAFSIRHGVSLNNPDMGK--HLIFTIVSLSAP----------------MSYAYNVFTVIH 79
Query: 87 ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA-ACEYTEPSEITILAVLPA 145
N+ TWN II G Y+ + + A +R+M +C EP T +L A
Sbjct: 80 NPNVFTWNTIIRG----------YAESDNPSPAFLFYRQMVVSC--VEPDTHTYPFLLKA 127
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
I K+ VR + IH + GF + + V N L+ YA CG SA K+FE + ++L
Sbjct: 128 ISKSLNVREGEAIHSVTIRNGFESL-VFVQNSLLHIYAACGDTESAYKVFE--LMKERDL 184
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN---------RSWRIG--EEGLKFFDK 254
V+W ++I+GFA++G EA+ F M G++P+ S +G E G +
Sbjct: 185 VAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVY 244
Query: 255 MVEECEVLPDIKHY-GCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSY 313
+++ L H L+D+ + G + +A+ V S + + N V W + + L +N +
Sbjct: 245 LLKVG--LSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSER--NAVSWTSLIVGLAVNGF 300
>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
Length = 571
Score = 187 bits (474), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 107/298 (35%), Positives = 165/298 (55%), Gaps = 26/298 (8%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76
P P D FTY FL+++C L P +G QLH + K G +S YV+ L MY S G
Sbjct: 89 PTSPRPDKFTYPFLLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSG 148
Query: 77 DSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE 136
+ K+F ++ +R++V+ WT +IDG+ +R+ EA+ LF M + EP+E
Sbjct: 149 RAYKVFGKMRDRDVVS----------WTSMIDGFVDDDRALEAIRLFEEMVE-DGVEPNE 197
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
T+++VL A G V + + G E+R + +V LID YAKCG I SA K+F+
Sbjct: 198 ATVVSVLRACADAGAVGMGRRVQGVIEERKI-GLEANVRTALIDMYAKCGSIGSARKVFD 256
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG----------- 245
+ K++ +WT +ISG A HG+ +EAV F++M+ GL+P+
Sbjct: 257 --GIVNKDVFAWTAMISGLANHGLCEEAVTLFDQMESFGLRPDERTMTAVLSACRNAGWF 314
Query: 246 EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
EG +F+ M + + P I+HYGC++D+L R G L++AEE +P + +VV+WRT
Sbjct: 315 SEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIE-PDVVLWRT 371
>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 186 bits (473), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 173/303 (57%), Gaps = 26/303 (8%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
VYKQ+ H +P+ P D FT+ F++++C L +LG Q+H K G +S+ V
Sbjct: 144 VYKQMLG-NPHGENPIFP--DKFTFPFVVKSCAGLMCYDLGKQVHGHVFKFGQKSNTVVE 200
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
+L +MYV L D+ ++F+E+ ER+ ++ WT I+ GY+R+ +AL
Sbjct: 201 NSLVEMYVKCDSLDDAHRVFEEMTERDATIFS--------WTAIVSGYARIGCYADALEF 252
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
FRRM EP EI++++VLP + G + + IH Y +K GF +I V N LI+ Y
Sbjct: 253 FRRMQMVG-IEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGF-LRNICVCNALIEMY 310
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW 242
AKCG I +LF+ + ++++SW+T+I G A HG +EA+E F+ MQK ++P+
Sbjct: 311 AKCGSIDQGRRLFD--QMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIIT 368
Query: 243 RIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
+G EGL++F+ M + + P ++HYGCL+++L +GRL+QA E+ +
Sbjct: 369 FVGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKM 428
Query: 292 PSQ 294
P +
Sbjct: 429 PRK 431
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 96/231 (41%), Gaps = 30/231 (12%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
++HA K ++ T + D+ G + ++ LF + + N +N +I
Sbjct: 77 KIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRA----- 131
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNC----QLIHG 160
Y A+ ++++M + E P + K+ C + +HG
Sbjct: 132 -----YKHNKVYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCYDLGKQVHG 186
Query: 161 YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGM 220
+ K G + + V N L++ Y KC + A ++FE+ + + SWT I+SG+A G
Sbjct: 187 HVFKFGQKSNTV-VENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYARIGC 245
Query: 221 GKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCL 271
+A+E F RMQ VG++P+ + VLPD G L
Sbjct: 246 YADALEFFRRMQMVGIEPDE---------------ISLVSVLPDCAQLGAL 281
>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 172/293 (58%), Gaps = 27/293 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ TY FLI+ T++ LG +H+V + GF S +YV +L +Y + G + + K+F
Sbjct: 120 DTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVF 179
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++PE++LV WN +I+G++ + EALAL+ M + + +P TI+++
Sbjct: 180 DKMPEKDLVAWN----------SVINGFAENGKPEEALALYTEMNS-KGIKPDGFTIVSL 228
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A K G + + +H Y K G ++H SN L+D YA+CG + A LF D VD
Sbjct: 229 LSACAKIGALTLGKRVHVYMIKVGLTR-NLHSSNVLLDLYARCGRVEEAKTLF-DEMVD- 285
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNRSWRIG-----------EEGLK 250
KN VSWT++I G A++G GKEA+E F+ M+ GL P +G +EG +
Sbjct: 286 KNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFE 345
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+F +M EE ++ P I+H+GC++D+L RAG++++A E +P Q NVV+WRT
Sbjct: 346 YFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQ-PNVVIWRT 397
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 106/230 (46%), Gaps = 35/230 (15%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT L+ C + LG ++H KVG +++ + L D+Y G ++++ LF
Sbjct: 221 DGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 280
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ ++N V+W +I GL ++G+ + EA+ LF+ M + E P EIT + +
Sbjct: 281 DEMVDKNSVSWTSLIVGLA-----VNGFGK-----EAIELFKYMESTEGLLPCEITFVGI 330
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFD-----------IHVSNCLIDTYAKCGCIFSA 191
L A G V K GF F I C++D A+ G + A
Sbjct: 331 LYACSHCGMV-----------KEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKA 379
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
+ + + + N+V W T++ +HG A F R+Q + L+PN S
Sbjct: 380 YEYIKSMPM-QPNVVIWRTLLGACTVHGDSDLA--EFARIQILQLEPNHS 426
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 111/228 (48%), Gaps = 15/228 (6%)
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
W +I GY+ + S A +L+R M EP T ++ A+ +VR + IH
Sbjct: 88 WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVV 147
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
+ GF + I+V N L+ YA CG + SA K+F+ + K+LV+W ++I+GFA +G +
Sbjct: 148 IRSGFGSL-IYVQNSLLHLYANCGDVASAYKVFD--KMPEKDLVAWNSVINGFAENGKPE 204
Query: 223 EAVENFERMQKVGLKPN---------RSWRIGEEGL-KFFDKMVEECEVLPDIKHYGCLI 272
EA+ + M G+KP+ +IG L K + + + ++ L+
Sbjct: 205 EALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLL 264
Query: 273 DILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITL 320
D+ R GR+E+A+ + + + N V W + + L +N + I L
Sbjct: 265 DLYARCGRVEEAKTLFDEMVDK--NSVSWTSLIVGLAVNGFGKEAIEL 310
>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 572
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 167/302 (55%), Gaps = 34/302 (11%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76
P PP D+FT+ FL++ C P LG QLHA+ +K+GF +Y+ L MY G L
Sbjct: 90 PSPP--DNFTFPFLLKCCSRSKLPPLGKQLHALLTKLGFAPDLYIQNVLLHMYSEFGDLL 147
Query: 77 DSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE 136
+ LFD +P R++V+W +I GLV + EA+ LF RM C E +E
Sbjct: 148 LARSLFDRMPHRDVVSWTSMIGGLVNHDLPV----------EAINLFERMLQCG-VEVNE 196
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIH----VSNCLIDTYAKCGCIFSAS 192
T+++VL A +G + + +H E+ G +IH VS L+D YAK GCI SA
Sbjct: 197 ATVISVLRACADSGALSMGRKVHANLEEWG---IEIHSKSNVSTALVDMYAKGGCIASAR 253
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RS 241
K+F+D V +++ WT +ISG A HG+ K+A++ F M+ G+KP+ R+
Sbjct: 254 KVFDD--VVHRDVFVWTAMISGLASHGLCKDAIDMFVDMESSGVKPDERTVTAVLTACRN 311
Query: 242 WRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ EG F + + P I+H+GCL+D+L RAGRL++AE+ + +P + + V+W
Sbjct: 312 AGLIREGFMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMPIE-PDTVLW 370
Query: 302 RT 303
RT
Sbjct: 371 RT 372
>gi|449452775|ref|XP_004144134.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
gi|449493602|ref|XP_004159370.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Cucumis sativus]
Length = 548
Score = 185 bits (470), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 106/311 (34%), Positives = 170/311 (54%), Gaps = 37/311 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DS++ +++ V LS +G Q+H V V T+L MY S GF+ D+ KLF
Sbjct: 121 DSYSIPSVLKAVVKLSAVEVGRQIHTQTVSSALDMDVNVATSLIQMYSSCGFVSDARKLF 180
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
D + +++ WN ++ G VK WT +I GY++ NR +EA+
Sbjct: 181 DFVGFKDVALWNAMVAGYVKVGELKSARKVFNEMPQRNVISWTTLIAGYAQTNRPHEAIE 240
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LFR+M E EP EI +LAVL A G + + IH Y EK G + + N LID
Sbjct: 241 LFRKM-QLEEVEPDEIAMLAVLSACADLGALELGEWIHNYIEKHGLCRI-VSLYNALIDM 298
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAK G I A ++FE+ + +K++++W+T+I+ A+HG+G EA++ F RM+K ++PN
Sbjct: 299 YAKSGNIRRALEVFEN--MKQKSVITWSTVIAALALHGLGGEAIDMFLRMEKAKVRPNEV 356
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+ + G +FD+M ++ P I+HYGC+ID+L RAG L++A+++
Sbjct: 357 TFVAILSACSHVGMVDVGRYYFDQMQSMYKIEPKIEHYGCMIDLLARAGYLQEAQKLLHD 416
Query: 291 IPSQITNVVVW 301
+P + N ++W
Sbjct: 417 MPFE-ANAMIW 426
>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 628
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 106/313 (33%), Positives = 173/313 (55%), Gaps = 41/313 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++FT+S +++ C G LH+ K+GF S +YV T L D+Y G + + +LF
Sbjct: 127 NAFTFSSILKLCPI----EPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLF 182
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
D +PE++LV+ ++T K W +IDGY++ NEAL
Sbjct: 183 DTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALV 242
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LFRRM + +P+E+T+L+VL A + G + + + +H Y E G F++HV L+D
Sbjct: 243 LFRRMLKAK-AKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQ-FNVHVGTALVDM 300
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
Y+KCG + A +F+ +D K++V+W ++I G+AMHG +EA++ F+ M ++GL P
Sbjct: 301 YSKCGSLEDARLVFD--KIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNI 358
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
IG EG F+KM +E + P I+HYGC++++L RAG +EQA E+
Sbjct: 359 TFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKN 418
Query: 291 IPSQITNVVVWRT 303
+ + + V+W T
Sbjct: 419 MNIE-PDPVLWGT 430
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 73/298 (24%), Positives = 121/298 (40%), Gaps = 57/298 (19%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
Q+HAV + G H +N L Y SLG L S LF ++ WT
Sbjct: 48 QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFF----------WT 97
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
II G++ +AL + +M + EP+ T ++L K + + +H K
Sbjct: 98 AIIHGHALRGLHEQALNFYAQMLT-QGVEPNAFTFSSIL----KLCPIEPGKALHSQAVK 152
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED--------------------------- 197
GF++ D++V L+D YA+ G + SA +LF+
Sbjct: 153 LGFDS-DLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARV 211
Query: 198 --TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---------SWRIGE 246
++ ++ V W +I G+ +GM EA+ F RM K KPN ++G
Sbjct: 212 LFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGA 271
Query: 247 -EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
E ++ +E + ++ L+D+ + G LE A V I + +VV W +
Sbjct: 272 LESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDK--DVVAWNS 327
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 98/202 (48%), Gaps = 19/202 (9%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
++ C L G +H+ G Q +V+V TAL DMY G L+D+ +FD++ +++
Sbjct: 262 VLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKD 321
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT-EPSEITILAVLPAIWK 148
+V WN +I GY+ S EAL LF+ M C P+ IT + +L A
Sbjct: 322 VVAWNSMIV----------GYAMHGFSQEALQLFKSM--CRMGLHPTNITFIGILSACGH 369
Query: 149 NGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
+G V + + ++ G I C+++ + G + A +L ++ +++ + V
Sbjct: 370 SGWVTEGWDIFNKMKDEYGIEP-KIEHYGCMVNLLGRAGHVEQAYELVKNMNIE-PDPVL 427
Query: 208 WTTIISGFAMHG---MGKEAVE 226
W T++ +HG +G++ VE
Sbjct: 428 WGTLLGACRLHGKIALGEKIVE 449
>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 102/299 (34%), Positives = 171/299 (57%), Gaps = 27/299 (9%)
Query: 16 SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL 75
SP P D FT++ +++ C L++ G ++HA+ +K GF+S+++V +L DMY G+L
Sbjct: 84 SPNAPNPDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYL 143
Query: 76 KDSSKLFDEL--PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE 133
+ LFDE+ +RN+V WN +I GY++ + ++A+ +FR M
Sbjct: 144 LLARHLFDEMFVRDRNVVCWNAMIA----------GYAQNEKYSDAIEVFRMMQQFGGVV 193
Query: 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASK 193
P+++T+++VLPA G + + I G+ +R A + + N L D YAKCGCI A +
Sbjct: 194 PNDVTLVSVLPACAHLGALDLGKWIDGFISRREM-ALGLFLGNALADMYAKCGCITEARR 252
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-------- 245
+F ++ ++++SW+ II G AM+G EA F M G KPN +G
Sbjct: 253 VF--NKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKPNDVVFMGLLTACTHA 310
Query: 246 ---EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
++GL F+ M +E V P ++HYGC++D+L RAG L++AE++ S +P + NV++W
Sbjct: 311 GLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDMISSMPMK-PNVIIW 368
>gi|297740786|emb|CBI30968.3| unnamed protein product [Vitis vinifera]
Length = 1434
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/272 (38%), Positives = 160/272 (58%), Gaps = 26/272 (9%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G ++H++ + GF+S V+V L MY + G + + KLF+ + ERNLVTWN
Sbjct: 14 GEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWN-------- 65
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
+I+GY+ R NEAL LFR M EP T++++L A + G + + H Y
Sbjct: 66 --SVINGYALNGRPNEALTLFREMGL-RGVEPDGFTMVSLLSACAELGALALGRRAHVYM 122
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
K G + ++H N L+D YAKCG I A K+F++ ++ K++VSWT++I G A++G GK
Sbjct: 123 VKVGLDG-NLHAGNALLDLYAKCGSIRQAHKVFDE--MEEKSVVSWTSLIVGLAVNGFGK 179
Query: 223 EAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCL 271
EA+E F+ +++ GL P+ +G +EG +F +M EE ++P I+HYGC+
Sbjct: 180 EALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCM 239
Query: 272 IDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+D+L RAG ++QA E +P Q N VVWRT
Sbjct: 240 VDLLGRAGLVKQAHEFIQNMPMQ-PNAVVWRT 270
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 103/230 (44%), Gaps = 36/230 (15%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT L+ C L LG + H KVG +++ AL D+Y G ++ + K+F
Sbjct: 95 DGFTMVSLLSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVF 154
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ E+++V+W +I GL ++G+ + EAL LF+ + + PSEIT + V
Sbjct: 155 DEMEEKSVVSWTSLIVGLA-----VNGFGK-----EALELFKELER-KGLMPSEITFVGV 203
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAF-----------DIHVSNCLIDTYAKCGCIFSA 191
L A G V GF+ F I C++D + G + A
Sbjct: 204 LYACSHCGMV-----------DEGFDYFKRMKEEYGIVPKIEHYGCMVDLLGRAGLVKQA 252
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
+ ++ + + N V W T++ +H G A+ R Q + L+P S
Sbjct: 253 HEFIQNMPM-QPNAVVWRTLLGACTIH--GHLALGEVARAQLLQLEPKHS 299
>gi|5262797|emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment) [Arabidopsis thaliana]
Length = 1495
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 172/293 (58%), Gaps = 27/293 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ TY FLI+ T++ LG +H+V + GF S +YV +L +Y + G + + K+F
Sbjct: 120 DTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVF 179
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++PE++LV WN +I+G++ + EALAL+ M + + +P TI+++
Sbjct: 180 DKMPEKDLVAWN----------SVINGFAENGKPEEALALYTEMNS-KGIKPDGFTIVSL 228
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A K G + + +H Y K G ++H SN L+D YA+CG + A LF D VD
Sbjct: 229 LSACAKIGALTLGKRVHVYMIKVGLTR-NLHSSNVLLDLYARCGRVEEAKTLF-DEMVD- 285
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNRSWRIG-----------EEGLK 250
KN VSWT++I G A++G GKEA+E F+ M+ GL P +G +EG +
Sbjct: 286 KNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFE 345
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+F +M EE ++ P I+H+GC++D+L RAG++++A E +P Q NVV+WRT
Sbjct: 346 YFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQ-PNVVIWRT 397
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 106/230 (46%), Gaps = 35/230 (15%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT L+ C + LG ++H KVG +++ + L D+Y G ++++ LF
Sbjct: 221 DGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 280
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ ++N V+W +I GL ++G+ + EA+ LF+ M + E P EIT + +
Sbjct: 281 DEMVDKNSVSWTSLIVGLA-----VNGFGK-----EAIELFKYMESTEGLLPCEITFVGI 330
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFD-----------IHVSNCLIDTYAKCGCIFSA 191
L A G V K GF F I C++D A+ G + A
Sbjct: 331 LYACSHCGMV-----------KEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKA 379
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
+ + + + N+V W T++ +HG A F R+Q + L+PN S
Sbjct: 380 YEYIKSMPM-QPNVVIWRTLLGACTVHGDSDLA--EFARIQILQLEPNHS 426
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 111/228 (48%), Gaps = 15/228 (6%)
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
W +I GY+ + S A +L+R M EP T ++ A+ +VR + IH
Sbjct: 88 WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVV 147
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
+ GF + I+V N L+ YA CG + SA K+F+ + K+LV+W ++I+GFA +G +
Sbjct: 148 IRSGFGSL-IYVQNSLLHLYANCGDVASAYKVFD--KMPEKDLVAWNSVINGFAENGKPE 204
Query: 223 EAVENFERMQKVGLKPN---------RSWRIGEEGL-KFFDKMVEECEVLPDIKHYGCLI 272
EA+ + M G+KP+ +IG L K + + + ++ L+
Sbjct: 205 EALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLL 264
Query: 273 DILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITL 320
D+ R GR+E+A+ + + + N V W + + L +N + I L
Sbjct: 265 DLYARCGRVEEAKTLFDEMVDK--NSVSWTSLIVGLAVNGFGKEAIEL 310
>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 583
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/311 (32%), Positives = 168/311 (54%), Gaps = 37/311 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +T SF+++ C L G +H K+G QS++++ + +Y G + + K+F
Sbjct: 112 DHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVF 171
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
D++P+R+++TWN++I LVK WT +I GY++ +S EA+
Sbjct: 172 DKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAID 231
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M P+E+T++AVL A G + + IH + + G+ +I V N LID
Sbjct: 232 LFLEMEDAGLL-PNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEK-NIRVCNTLIDM 289
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
Y KCGC+ A ++F++ ++ + +VSW+ +I+G A HG ++A+ F +M G+KPN
Sbjct: 290 YVKCGCLEDACRIFDN--MEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAV 347
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
IG E+G K+F M + ++P I+HYGC++D+ RAG L++A E
Sbjct: 348 TFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMN 407
Query: 291 IPSQITNVVVW 301
+P N VVW
Sbjct: 408 MPIA-PNGVVW 417
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 31/169 (18%)
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
+ W + ++ + +A++LF R+ + + P T VL A + +VRN +++H
Sbjct: 78 VTHWNTCLRSFAEGDSPADAISLFYRLREFDIS-PDHYTCSFVLKACSRLLDVRNGKIVH 136
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED---------------------- 197
GY EK G + ++ + N ++ YA CG I A K+F+
Sbjct: 137 GYVEKLGLQS-NMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDA 195
Query: 198 -------TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+ +N+ SWT++I G+A G KEA++ F M+ GL PN
Sbjct: 196 EGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPN 244
>gi|224073108|ref|XP_002303975.1| predicted protein [Populus trichocarpa]
gi|222841407|gb|EEE78954.1| predicted protein [Populus trichocarpa]
Length = 508
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 106/315 (33%), Positives = 171/315 (54%), Gaps = 40/315 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF--LKDSSK 80
DS+++ F ++ S G QLH+ + G S ++V TA MY S G + D+ K
Sbjct: 77 DSYSFPFALKAVTRFSSIQTGRQLHSQSIRFGLHSDLHVLTAFVQMYSSFGSGCICDARK 136
Query: 81 LFD--ELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSN 117
+FD + ++ WN ++ G K WT +I GY++ NR +
Sbjct: 137 MFDGMSMSTGDVALWNAMLNGYAKHGDLCNARDLFERMPQRNVISWTALITGYAQANRPH 196
Query: 118 EALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
+A+ALFRRM E EP EI +L L A + G + + I Y ++ G +I ++N
Sbjct: 197 DAIALFRRMQ-LENVEPDEIAMLVALTACARLGALELGEWIRHYIDRLGLLTTNIPLNNA 255
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
LID YAK G I SA ++FE+ ++ K +++WTT+I+G A+HG+G EA+E F RM++ +K
Sbjct: 256 LIDMYAKSGDIKSALQVFEN--MNHKTIITWTTMIAGLALHGLGTEALEMFSRMERARVK 313
Query: 238 PNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
PN I + G +F++M+ + P I+HYGC+ID+L RAG L++A+
Sbjct: 314 PNDITFIAILSACSHVGLVQTGRWYFNRMISRYGIEPKIEHYGCMIDLLGRAGHLKEAQT 373
Query: 287 VASGIPSQITNVVVW 301
+ + +P + N V+W
Sbjct: 374 LLAQMPFE-PNAVIW 387
>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 632
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 103/317 (32%), Positives = 174/317 (54%), Gaps = 36/317 (11%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76
P P D +T++ +++ C L+ G ++H +K G +S+++V +L D+Y +G
Sbjct: 120 PNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNC 179
Query: 77 DSSKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNR 115
+ KLFDE+ R++V+WN +I+G LV W+ +I GY+R +
Sbjct: 180 IAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEK 239
Query: 116 SNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS 175
+A+ LFR+M P+++T+++VL A G + + IH + +R + +
Sbjct: 240 YADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRF-IRRNKIEVGLFLG 298
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
N L D YAKCGC+ A +F + + ++++SW+ II G AM+G EA F M + G
Sbjct: 299 NALADMYAKCGCVLEAKGVFHE--MHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDG 356
Query: 236 LKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
L+PN +G ++GL++FD M + + P I+HYGC++D+L RAGRL+QA
Sbjct: 357 LEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQA 416
Query: 285 EEVASGIPSQITNVVVW 301
E + + +P Q NV+VW
Sbjct: 417 ESLINSMPMQ-PNVIVW 432
>gi|224082530|ref|XP_002306730.1| predicted protein [Populus trichocarpa]
gi|222856179|gb|EEE93726.1| predicted protein [Populus trichocarpa]
Length = 578
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 171/292 (58%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ T SF+++ C + Q+H + GF + + T L D+Y +G + + K+F
Sbjct: 104 DALTCSFVLKACARVLARLESIQIHTHIVRKGFIADALLGTTLLDVYAKVGEIDSAEKVF 163
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ +R++ +WN +I+ G+++ ++ EAL+LF+RM + +P+EI++L
Sbjct: 164 DEMVKRDIASWNALIS----------GFAQGSKPTEALSLFKRMEIDGF-KPNEISVLGA 212
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + G+ + + IHGY + F+ + V N +ID YAKCG + A +FE S R
Sbjct: 213 LSACAQLGDFKEGEKIHGYIKVERFD-MNAQVCNVVIDMYAKCGFVDKAYLVFESMSC-R 270
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
K++V+W T+I FAMHG G +A+E FE+M + G+ P+ + EEG +
Sbjct: 271 KDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVSPDDVSYLAVLCACNHGGLVEEGFRL 330
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ M E C V P++KHYG ++D+L RAGRL +A ++ + +P+ + ++V+W+T
Sbjct: 331 FNSM-ENCGVKPNVKHYGSVVDLLGRAGRLHEAYDIVNSMPT-VPDIVLWQT 380
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 139/302 (46%), Gaps = 56/302 (18%)
Query: 28 SFLIRTCVTLSYPNLGTQLHA-VFSKVGFQSHVY-VNTALGDMY-VSLGFLKDSSKLFDE 84
SFL + C TLS P+ QLHA +F+ F+ + + L ++Y +SLG L + F +
Sbjct: 7 SFLSK-CTTLSLPHT-KQLHAHLFTTGQFRLPISPARSKLLELYALSLGNLSFAILTFSQ 64
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGY----SRMNRSNEALALFRRMAACEYTEPSEITIL 140
+ + WN II G ++ + + S +++S + AL C + + +L
Sbjct: 65 IRTPSTNDWNAIIRGFIQSPNPTNAFAWYKSMISKSRKVDAL-----TCSFVLKACARVL 119
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
A L +I IH + ++GF A D + L+D YAK G I SA K+F++
Sbjct: 120 ARLESIQ----------IHTHIVRKGFIA-DALLGTTLLDVYAKVGEIDSAEKVFDEMV- 167
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
++++ SW +ISGFA EA+ F+RM+ G KPN +G +EG
Sbjct: 168 -KRDIASWNALISGFAQGSKPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGE 226
Query: 250 KF--------FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
K FD + C V +ID+ + G +++A V + + ++V W
Sbjct: 227 KIHGYIKVERFDMNAQVCNV---------VIDMYAKCGFVDKAYLVFESMSCR-KDIVTW 276
Query: 302 RT 303
T
Sbjct: 277 NT 278
>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 617
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 101/311 (32%), Positives = 168/311 (54%), Gaps = 37/311 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +T SF+++ C L G +H K+G QS++++ + +Y G + + K+F
Sbjct: 112 DHYTCSFVLKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVF 171
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
D++P+R+++TWN++I LVK WT +I GY++ +S EA+
Sbjct: 172 DKMPQRDVITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAID 231
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M P+E+T++AVL A G + + IH + + G+ +I V N LID
Sbjct: 232 LFLEMEDAGLL-PNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEK-NIRVCNTLIDM 289
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
Y KCGC+ A ++F++ ++ + +VSW+ +I+G A HG ++A+ F +M G+KPN
Sbjct: 290 YVKCGCLEDACRIFDN--MEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAV 347
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
IG E+G K+F M + ++P I+HYGC++D+ RAG L++A E
Sbjct: 348 TFIGILHACSHMGMVEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMN 407
Query: 291 IPSQITNVVVW 301
+P N VVW
Sbjct: 408 MPIA-PNGVVW 417
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 31/169 (18%)
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
+ W + ++ + +A++LF R+ + + P T VL A + +VRN +++H
Sbjct: 78 VTHWNTCLRSFAEGDSPADAISLFYRLREFDIS-PDHYTCSFVLKACSRLLDVRNGKIVH 136
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED---------------------- 197
GY EK G + ++ + N ++ YA CG I A K+F+
Sbjct: 137 GYVEKLGLQS-NMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDA 195
Query: 198 -------TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+ +N+ SWT++I G+A G KEA++ F M+ GL PN
Sbjct: 196 EGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPN 244
>gi|45935146|gb|AAS79604.1| putative pentatricopeptide repeat-containing protein [Ipomoea
trifida]
gi|118562903|dbj|BAF37793.1| hypothetical protein [Ipomoea trifida]
Length = 575
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/295 (35%), Positives = 169/295 (57%), Gaps = 27/295 (9%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P D FTY F+++ C + G Q+H + K G S Y+N AL +Y G +
Sbjct: 97 PRPDHFTYPFVLKACSKSGHARFGKQIHGLVFKSGVGSDRYINNALIHLYSVSGEPNLAY 156
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
K+FD++P+R++V+ WT IIDG+ +R EA+ LF M EP+E+T+
Sbjct: 157 KVFDKMPDRDVVS----------WTSIIDGFVDNDRPIEAIRLFTHMIE-NGIEPNEVTV 205
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+VL A G + + IH + +++ F++ + +VS LID YAKCGCI A ++F++T
Sbjct: 206 ASVLRACADTGALNTGERIHSFVKEKNFSS-NANVSTALIDMYAKCGCIDGALEVFDETL 264
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEG 248
K++ WT II+G A HG+ +A+E FE M+K +K + R+ + EG
Sbjct: 265 --EKDVYVWTAIIAGLASHGLCMKAIEFFENMKKSDVKMDERAITAVLSAYRNAGLVSEG 322
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
L FF ++ ++ ++ P I+HYGC++D+L RAGRL+ AEE +P + + V+WRT
Sbjct: 323 LLFFRRL-KKHKIKPTIQHYGCVVDMLTRAGRLKDAEEFIRKMPIE-PDAVLWRT 375
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 103 WTGIIDGYSRMNRSNEALALFRRM-----AACEYTEPSEITILAVLPAIWKNGEVRNCQL 157
+ +I YS A LF M A+ P T VL A K+G R +
Sbjct: 63 YNTMIRAYSDSTDPTRAFTLFLYMQNPDDASVAVPRPDHFTYPFVLKACSKSGHARFGKQ 122
Query: 158 IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAM 217
IHG K G + D +++N LI Y+ G A K+F D DR ++VSWT+II GF
Sbjct: 123 IHGLVFKSGVGS-DRYINNALIHLYSVSGEPNLAYKVF-DKMPDR-DVVSWTSIIDGFVD 179
Query: 218 HGMGKEAVENFERMQKVGLKPN 239
+ EA+ F M + G++PN
Sbjct: 180 NDRPIEAIRLFTHMIENGIEPN 201
>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 105/292 (35%), Positives = 170/292 (58%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +T+ L++ C + G QLH + K+G +VYV L +MY + + + ++F
Sbjct: 120 DDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVF 179
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++ E +VT+N +ITG Y+R +R NEAL+LFR + A +P+++T+L+V
Sbjct: 180 DKIWEPCVVTYNAMITG----------YARGSRPNEALSLFRELQA-RNLKPTDVTMLSV 228
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + G + + +H Y +K GFN F + V LID YAKCG + A +FE+ +V
Sbjct: 229 LSSCALLGALDLGKWMHEYVKKNGFNRF-VKVDTALIDMYAKCGSLDDAVCVFENMAV-- 285
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
++ +W+ +I +A+HG G +AV F+ M+K G +P+ +G EEG ++
Sbjct: 286 RDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEY 345
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F M ++ V+P IKHYGC++D+L RAGRLE+A E G+P + T ++WRT
Sbjct: 346 FYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTP-ILWRT 396
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 75/165 (45%), Gaps = 14/165 (8%)
Query: 75 LKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134
++ + LFD++P+ ++V +N + GY+R + A LF ++ P
Sbjct: 71 MQHAHHLFDQIPQPDIVLFNTMAR----------GYARTDTPLRAFTLFTQILFSGLF-P 119
Query: 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
+ T ++L A + + +H K G + +++V LI+ Y C + A ++
Sbjct: 120 DDYTFPSLLKACASCKALEEGRQLHCLAIKLGLSE-NVYVCPTLINMYTACNEMDCARRV 178
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
F+ + +V++ +I+G+A EA+ F +Q LKP
Sbjct: 179 FD--KIWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPT 221
>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 595
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 171/293 (58%), Gaps = 27/293 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ TY FL++ ++ LG +H+V + GF S +YV +L +Y + G + + K+F
Sbjct: 120 DTHTYPFLLKAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVF 179
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++PE++LV WN +I+G++ + EALAL+ M + +P TI+++
Sbjct: 180 DKMPEKDLVAWN----------SVINGFAENGKPEEALALYTEM-DLKGIKPDGFTIVSL 228
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A K G + + H Y K G ++H SN L+D YA+CG + A LF D VD
Sbjct: 229 LSACAKIGALTLGKRFHVYMIKVGLTR-NLHSSNVLLDLYARCGRVEEAKTLF-DEMVD- 285
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQ-KVGLKPNRSWRIG-----------EEGLK 250
KN VSWT++I G A++G+GKEA+E F+ M+ K GL P +G +EG +
Sbjct: 286 KNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFE 345
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+F +M EE ++ P I+H+GC++D+L RAG++++A E +P Q NVV+WRT
Sbjct: 346 YFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQ-PNVVIWRT 397
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 113/219 (51%), Gaps = 15/219 (6%)
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
W +I GY+ + S A++L+R M A + EP T +L A+ K +VR + IH
Sbjct: 88 WNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETIHSVV 147
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
+ GF + I+V N L+ YA CG + SA K+F+ + K+LV+W ++I+GFA +G +
Sbjct: 148 IRSGFGSL-IYVQNSLLHLYANCGDVASAYKVFD--KMPEKDLVAWNSVINGFAENGKPE 204
Query: 223 EAVENFERMQKVGLKPN---------RSWRIGEEGL-KFFDKMVEECEVLPDIKHYGCLI 272
EA+ + M G+KP+ +IG L K F + + + ++ L+
Sbjct: 205 EALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLL 264
Query: 273 DILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLIN 311
D+ R GR+E+A+ + + + N V W + + L +N
Sbjct: 265 DLYARCGRVEEAKTLFDEMVDK--NSVSWTSLIVGLAVN 301
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 63/230 (27%), Positives = 102/230 (44%), Gaps = 35/230 (15%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT L+ C + LG + H KVG +++ + L D+Y G ++++ LF
Sbjct: 221 DGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 280
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ ++N V+W +I GL ++G + EA+ LF+ M + E P EIT + +
Sbjct: 281 DEMVDKNSVSWTSLIVGLA-----VNGLGK-----EAIELFKNMESKEGLLPCEITFVGI 330
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFD-----------IHVSNCLIDTYAKCGCIFSA 191
L A G V K GF F I C++D A+ G + A
Sbjct: 331 LYACSHCGMV-----------KEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKA 379
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
+ + + N+V W T++ +HG A RM+ + L+PN S
Sbjct: 380 YEYILKMPM-QPNVVIWRTLLGACTVHGDSDLA--ELARMKILQLEPNHS 426
>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
Length = 1280
Score = 180 bits (457), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 165/296 (55%), Gaps = 27/296 (9%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D+ TY LI+ C L G LHA +K GF + V+V +L +Y + G + + K
Sbjct: 801 LPDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHK 860
Query: 81 LFDELP--ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
+FDE+P RNLV+WN +++ ++ R NE L +F M ++ P T
Sbjct: 861 VFDEMPVRGRNLVSWN----------SMLNSFAANGRPNEVLTVFWEMLGVDFA-PDGFT 909
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
I++VL A + G + + +H Y EK G + HVSN LID YAKCG + A ++FE+
Sbjct: 910 IVSVLTACAEFGALALGRRVHVYVEKVGL-VENSHVSNALIDLYAKCGSVNDARRIFEEM 968
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EE 247
+ R +VSWT++I G A +G GKEA+E F M++ L P +G ++
Sbjct: 969 GLGR-TVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDD 1027
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
G ++FD+M E+ + P I+H GC++D+L RAGR+E+A + +P + N VVWRT
Sbjct: 1028 GFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLE-PNAVVWRT 1082
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 100/231 (43%), Gaps = 37/231 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT ++ C LG ++H KVG + +V+ AL D+Y G + D+ ++F
Sbjct: 906 DGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIF 965
Query: 83 DELP-ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
+E+ R +V+W +I GL +G+ + EAL LF M E P+EIT++
Sbjct: 966 EEMGLGRTVVSWTSLIVGLAA-----NGFGK-----EALELFSLMER-EKLVPTEITMVG 1014
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFD-----------IHVSNCLIDTYAKCGCIFS 190
VL A +C L+ GF FD I C++D + G +
Sbjct: 1015 VLYA------CSHCGLVDD-----GFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEE 1063
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
A ++ N V W T++ AMH + +ER+ V L P S
Sbjct: 1064 AYDYIITMPLE-PNAVVWRTLLGSCAMHKKLELGKVAWERL--VELDPGHS 1111
>gi|225433481|ref|XP_002264386.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g03510 [Vitis vinifera]
gi|298205226|emb|CBI17285.3| unnamed protein product [Vitis vinifera]
Length = 430
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/322 (30%), Positives = 170/322 (52%), Gaps = 36/322 (11%)
Query: 9 QIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDM 68
++ H H+ P D+F + +++C PNLG +HA +K S+ +V AL DM
Sbjct: 32 SLFHHMHASSAPALDAFVFPLALKSCAAAHRPNLGAAIHAHVTKFSLVSNPFVACALVDM 91
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIIT------------GLVK----------WTGI 106
Y + + LFDE+P RN+V WN +I+ GL + + I
Sbjct: 92 YGKCVSVSSARHLFDEIPHRNIVVWNAMISIYTHSGRVADALGLFEVMDVEPNASTFNAI 151
Query: 107 IDGYSRM-NRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
I G S + + S +AL+ +RRM + + IT+LA+LPA + + IHGY +
Sbjct: 152 ISGLSGLEDGSFKALSFYRRMGEVGLKQ-NLITLLALLPACVDLAALTLIKEIHGYAIRN 210
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225
G + H+ +CL++ Y +CGCI ++ +F+ S+ +++V+W+++IS +A+HG + A+
Sbjct: 211 GIDPHP-HLRSCLVEAYGRCGCIVNSQCVFQSISMSERDVVAWSSLISAYALHGDARTAL 269
Query: 226 ENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDI 274
E FE+M+ ++P+ +G +E L +F +M ++ V HY C++D
Sbjct: 270 ETFEQMEMAKVQPDGITFLGVLKACSHAGLADEALGYFGRMCKDYGVEASSDHYSCVVDA 329
Query: 275 LERAGRLEQAEEVASGIPSQIT 296
L RAGRL +A E+ G+P + T
Sbjct: 330 LSRAGRLYEAYEIIQGMPVKST 351
>gi|356577724|ref|XP_003556973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Glycine max]
Length = 549
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 113/319 (35%), Positives = 165/319 (51%), Gaps = 41/319 (12%)
Query: 18 LPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD 77
+PP DS+++ F+++ V LS ++G Q+H G SH V T+L MY S L
Sbjct: 123 MPP--DSYSFPFVLKAVVCLSAVHVGKQIHCQAIVSGLDSHPSVVTSLVQMYSSCAHLSS 180
Query: 78 SSKLFDELPERNLVTWNVIITG-----------------------LVKWTGIIDGYSRMN 114
+ KLFD ++ WN ++ G +V WT +I GY++ +
Sbjct: 181 ARKLFDGATFKHAPLWNAMLAGYAKVGNMSNARNLFECMPEKDRDVVSWTTLISGYTQTH 240
Query: 115 RSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD-IH 173
NEA+ LFR M + +P EI ILAVL A G ++ + IH Y EK +
Sbjct: 241 SPNEAITLFRIM-LLQNVQPDEIAILAVLSACADLGALQLGEWIHNYIEKHNNKLRKTVP 299
Query: 174 VSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
+ N LID YAK G I A +LF++ + K +++WTT+ISG A+HG GKEA++ F M+K
Sbjct: 300 LCNSLIDMYAKSGDISKARQLFQN--MKHKTIITWTTVISGLALHGFGKEALDVFSCMEK 357
Query: 234 VGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLE 282
+KPN I E G F M + + P I+HYGC+ID+L RAG L+
Sbjct: 358 ARVKPNEVTLIAVLSACSHVGLVELGRNIFTSMRSKYGIEPKIEHYGCMIDLLGRAGYLQ 417
Query: 283 QAEEVASGIPSQITNVVVW 301
+A E+ +PS+ N VW
Sbjct: 418 EAMELVRVMPSE-ANAAVW 435
>gi|147777522|emb|CAN64813.1| hypothetical protein VITISV_024998 [Vitis vinifera]
Length = 513
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 99/322 (30%), Positives = 170/322 (52%), Gaps = 36/322 (11%)
Query: 9 QIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDM 68
++ H H+ P D+F + +++C PNLG +HA +K S+ +V AL DM
Sbjct: 32 SLFHHMHASSAPALDAFVFPLALKSCAAAHRPNLGAAIHAHVTKFSLVSNPFVACALVDM 91
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIIT------------GLVK----------WTGI 106
Y + + LFDE+P RN+V WN +I+ GL + + I
Sbjct: 92 YGKCVSVSSARHLFDEIPHRNIVVWNAMISIYTHSGRVADALGLFEVMDVEPNASTFNAI 151
Query: 107 IDGYSRM-NRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
I G S + + S +AL+ +RRM + + IT+LA+LPA + + IHGY +
Sbjct: 152 ISGLSGLEDGSFKALSFYRRMGEVGLKQ-NLITLLALLPACVDLAALTLIKEIHGYAIRN 210
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225
G + H+ +CL++ Y +CGCI ++ +F+ S+ +++V+W+++IS +A+HG + A+
Sbjct: 211 GIDPHP-HLRSCLVEAYGRCGCIVNSQCVFQSISMSERDVVAWSSLISAYALHGDARTAL 269
Query: 226 ENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDI 274
E FE+M+ ++P+ +G +E L +F +M ++ V HY C++D
Sbjct: 270 ETFEQMEMAKVQPDGITFLGVLKACSHAGLADEALGYFGRMCKDYGVEASSDHYSCVVDA 329
Query: 275 LERAGRLEQAEEVASGIPSQIT 296
L RAGRL +A E+ G+P + T
Sbjct: 330 LSRAGRLYEAYEIIQGMPVKAT 351
>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 606
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 106/295 (35%), Positives = 162/295 (54%), Gaps = 27/295 (9%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY-VSLGFLKDSS 79
L + FTY F+++ C L NLG +H K GF ++V + MY G + +
Sbjct: 129 LPNKFTYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSAR 188
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
K+FDE+P+ + VTW + +I GY+R+ RS EA+ALFR M E P EIT+
Sbjct: 189 KVFDEMPKSDSVTW----------SAMIGGYARVGRSTEAVALFREMQMAEVC-PDEITM 237
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+++L A G + + I Y E+ + + VSN LID +AKCG I A KLF +
Sbjct: 238 VSMLSACTDLGALELGKWIEAYIERHEIHK-PVEVSNALIDMFAKCGDISKALKLFR--A 294
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
++ K +VSWT++I G AMHG G+EA FE M G+ P+ IG E G
Sbjct: 295 MNEKTIVSWTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERG 354
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++F M+++ +++P I+HYGC++D+ R G +++A E +P + N V+ RT
Sbjct: 355 REYFGSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIE-PNPVILRT 408
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 80/197 (40%), Gaps = 12/197 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ C L LG + A + V V+ AL DM+ G + + KLF
Sbjct: 233 DEITMVSMLSACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLF 292
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ E+ +V+W T +I G + R EA LF M + P ++ + +
Sbjct: 293 RAMNEKTIVSW----------TSVIVGMAMHGRGQEATCLFEEMTS-SGVAPDDVAFIGL 341
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A +G V + G K+ I C++D Y + G + A + + ++
Sbjct: 342 LSACSHSGLVERGREYFGSMMKKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIE- 400
Query: 203 KNLVSWTTIISGFAMHG 219
N V T++S HG
Sbjct: 401 PNPVILRTLVSACRGHG 417
>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 589
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 172/315 (54%), Gaps = 39/315 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ ++++FL C +L G LH+ F K GF S ++ TAL DMY LG L+ + +LF
Sbjct: 81 NQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLF 140
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
DE+P R++ TWN +I G ++ WT +I GY++ + +AL
Sbjct: 141 DEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALE 200
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF--NAFDIHVSNCLI 179
+F + + T+P+E++I +VLPA + G + + I Y GF NA+ VSN ++
Sbjct: 201 MFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAY---VSNAVL 257
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+ +A+CG I A ++F++ ++NL SW T+I G A+HG +A++ +++M ++P+
Sbjct: 258 ELHARCGNIEEAQQVFDEIG-SKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPD 316
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
+G EG + F+ M + +V P ++HYGCL+D+L RAG L++A +
Sbjct: 317 DVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLI 376
Query: 289 SGIPSQITNVVVWRT 303
+P + V+W T
Sbjct: 377 QNMP-MAPDSVIWGT 390
>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
Length = 575
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 108/320 (33%), Positives = 175/320 (54%), Gaps = 43/320 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++FT+S +++ C G LH+ K+GF S +YV T L D+Y G + + +LF
Sbjct: 74 NAFTFSSILKLCPI----EPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLF 129
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
D +PE++LV+ ++T K W +IDGY++ NEAL
Sbjct: 130 DTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALV 189
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LFRRM + +P+E+T+L+VL A + G + + + +H Y E G F++HV L+D
Sbjct: 190 LFRRMLKAK-AKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQ-FNVHVGTALVDM 247
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
Y+KCG + A +F+ +D K++V+W ++I G+AM G +EA++ F+ M ++GL P
Sbjct: 248 YSKCGSLEDARLVFD--KIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNI 305
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
IG EG F+KM +E + P I+HYGC++++L RAG +EQA E+
Sbjct: 306 TFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKN 365
Query: 291 IPSQITNVVVWRT--GFLRL 308
+ + + V+W T G RL
Sbjct: 366 MNIE-PDPVLWGTLLGACRL 384
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 98/202 (48%), Gaps = 19/202 (9%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
++ C L G +H+ G Q +V+V TAL DMY G L+D+ +FD++ +++
Sbjct: 209 VLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKD 268
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT-EPSEITILAVLPAIWK 148
+V WN +I GY+ S EAL LF+ M C P+ IT + +L A
Sbjct: 269 VVAWNSMIV----------GYAMXGFSQEALQLFKSM--CRMGLHPTNITFIGILSACGH 316
Query: 149 NGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
+G V + + ++ G I C+++ + G + A +L ++ +++ + V
Sbjct: 317 SGWVTEGWDIFNKMKDEYGIEP-KIEHYGCMVNLLGRAGHVEQAYELVKNMNIE-PDPVL 374
Query: 208 WTTIISGFAMHG---MGKEAVE 226
W T++ +HG +G++ VE
Sbjct: 375 WGTLLGACRLHGKIALGEKIVE 396
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 109/274 (39%), Gaps = 57/274 (20%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y SLG L S LF ++ W II G++ +AL + +M
Sbjct: 19 YASLGRLDYSVALFGRTQNPSVFFWTA----------IIHGHALRGLHEQALNFYAQMLT 68
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
+ EP+ T ++L K + + +H K GF++ D++V L+D YA+ G +
Sbjct: 69 -QGVEPNAFTFSSIL----KLCPIEPGKALHSQAVKLGFDS-DLYVRTGLLDVYARGGDV 122
Query: 189 FSASKLFED-----------------------------TSVDRKNLVSWTTIISGFAMHG 219
SA +LF+ ++ ++ V W +I G+ +G
Sbjct: 123 VSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNG 182
Query: 220 MGKEAVENFERMQKVGLKPNR---------SWRIGE-EGLKFFDKMVEECEVLPDIKHYG 269
M EA+ F RM K KPN ++G E ++ +E + ++
Sbjct: 183 MPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGT 242
Query: 270 CLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
L+D+ + G LE A V I + +VV W +
Sbjct: 243 ALVDMYSKCGSLEDARLVFDKIDDK--DVVAWNS 274
>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
Length = 592
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 108/296 (36%), Positives = 165/296 (55%), Gaps = 27/296 (9%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D+ TY LI+ C L G LHA +K GF + V+V +L +Y + G + + K
Sbjct: 113 LPDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHK 172
Query: 81 LFDELP--ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
+FDE+P RNLV+WN +++ ++ R NE L +F M ++ P T
Sbjct: 173 VFDEMPVRGRNLVSWN----------SMLNSFAANGRPNEVLTVFWEMLGVDFA-PDGFT 221
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
I++VL A + G + + +H Y EK G + HVSN LID YAKCG + A ++FE+
Sbjct: 222 IVSVLTACAEFGALALGRRVHVYVEKVGL-VENSHVSNALIDLYAKCGSVNDARRIFEEM 280
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EE 247
+ R +VSWT++I G A +G GKEA+E F M++ L P +G ++
Sbjct: 281 GLGR-TVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDD 339
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
G ++FD+M E+ + P I+H GC++D+L RAGR+E+A + +P + N VVWRT
Sbjct: 340 GFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLE-PNAVVWRT 394
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 102/234 (43%), Gaps = 43/234 (18%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT ++ C LG ++H KVG + +V+ AL D+Y G + D+ ++F
Sbjct: 218 DGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIF 277
Query: 83 DELP-ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
+E+ R +V+W +I GL +G+ + EAL LF M E P+EIT++
Sbjct: 278 EEMGLGRTVVSWTSLIVGLAA-----NGFGK-----EALELFSLMER-EKLVPTEITMVG 326
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFD-----------IHVSNCLIDTYAKCGCIFS 190
VL A G V + GF FD I C++D + G +
Sbjct: 327 VLYACSHCGLVDD-----------GFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEE 375
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKPNRS 241
A ++ N V W T++ AMH +GK A +ER+ V L P S
Sbjct: 376 AYDYIITMPLE-PNAVVWRTLLGSCAMHKKLELGKVA---WERL--VELDPGHS 423
>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Vitis vinifera]
Length = 512
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 113/346 (32%), Positives = 171/346 (49%), Gaps = 49/346 (14%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFT-------------YSFLIRTCVTLSYPNLGTQLHAV 49
+Y +L Q Y SH P F +T ++FL C +LS G LH
Sbjct: 49 LYNKLIQAY-SSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTH 107
Query: 50 FSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK------- 102
F K GF V+ TAL DMY LG L + K FDE+ R++ TWN +I G +
Sbjct: 108 FVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGA 167
Query: 103 --------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148
WT +I GY++ + +AL++F M P+E+T+ +VLPA
Sbjct: 168 LELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACAN 227
Query: 149 NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSW 208
G + + I Y G+ +++VSN L++ YA+CG I A +FE+ R+NL SW
Sbjct: 228 LGALEVGERIEVYARGNGYFK-NLYVSNALLEMYARCGRIDKAWGVFEEID-GRRNLCSW 285
Query: 209 TTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVE 257
++I G A+HG EA+E F +M + G P+ +G EG FF+ M
Sbjct: 286 NSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVVEGQHFFESMER 345
Query: 258 ECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ + P ++HYGC++D+L RAG L +A ++ +P + + VVW T
Sbjct: 346 DFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPME-PDSVVWGT 390
>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 109/360 (30%), Positives = 183/360 (50%), Gaps = 69/360 (19%)
Query: 7 LQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALG 66
L+ I + +S PP DSF+++F+++ L +G QLH G +H++V T L
Sbjct: 91 LKFIEMRRNSFSPP--DSFSFAFIVKAAANLRSVRVGIQLHCQALVHGLDTHLFVGTTLI 148
Query: 67 DMYVSLGFLKDSSKLFDELPE-------------------------------RNLVTWNV 95
MY GF+ + K+FDE+PE RNL++WNV
Sbjct: 149 SMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMPVRNLMSWNV 208
Query: 96 IITGLVK---------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134
++ G K W+ +I G++ EA + FR + + P
Sbjct: 209 MLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQR-KGMRP 267
Query: 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
+E ++ VL A + G + +++HG+ EK G A+ + V+N L+DTY+KCG + A +
Sbjct: 268 NETSLTGVLSACAQAGALEFGKILHGFIEKSGL-AWIVSVNNALLDTYSKCGNVLMAQLV 326
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG--------- 245
FE ++ +N+VSWT++++ AMHG G+EA+ F +M++ G++P+ I
Sbjct: 327 FERI-MNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAG 385
Query: 246 --EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
E+G ++FDKM + P I+HYGC++D+ RAG+L++A E +P T ++WRT
Sbjct: 386 LVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCT-AIIWRT 444
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 94/216 (43%), Gaps = 21/216 (9%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE-LPER 88
++ C G LH K G V VN AL D Y G + + +F+ + ER
Sbjct: 275 VLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNER 334
Query: 89 NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148
N+V+W ++ L + G+ EA+ +F +M P EI +++L A
Sbjct: 335 NIVSWTSMMAALA-----MHGHG-----EEAIGIFHKMEE-SGIRPDEIAFISLLYACSH 383
Query: 149 NGEV-RNCQLIHGYGEKRGFNAFDIHVSN--CLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
G V + C+ + + +G + + + C++D Y + G + A + + +
Sbjct: 384 AGLVEQGCEY---FDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAI 440
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
+ W T++ +MHG K A + ER+ + L PN S
Sbjct: 441 I-WRTLLGACSMHGDVKLAEQVKERLSE--LDPNNS 473
>gi|218199092|gb|EEC81519.1| hypothetical protein OsI_24907 [Oryza sativa Indica Group]
Length = 460
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 107/296 (36%), Positives = 165/296 (55%), Gaps = 27/296 (9%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D+ TY L++ C L G LHA +K GF + V+V +L +Y + G + + K
Sbjct: 113 LPDTHTYPPLLQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHK 172
Query: 81 LFDELP--ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
+FDE+P RNLV+WN +++ ++ R NE L +F M ++ P T
Sbjct: 173 VFDEMPVRGRNLVSWN----------SMLNSFAANGRPNEVLTVFWEMLGVDFA-PDGFT 221
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
I++VL A + G + + +H Y EK G + HVSN LID YAKCG + A ++FE+
Sbjct: 222 IVSVLTACAEFGALALGRRVHVYVEKVGL-VENSHVSNALIDLYAKCGSVNDARRIFEEM 280
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EE 247
+ R +VSWT++I G A +G GKEA+E F M++ L P +G ++
Sbjct: 281 GLGR-TVVSWTSLIVGLAANGFGKEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDD 339
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
G ++FD+M E+ + P I+H GC++D+L RAGR+E+A + +P + N VVWRT
Sbjct: 340 GFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEEAYDYIITMPLE-PNAVVWRT 394
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 100/231 (43%), Gaps = 37/231 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT ++ C LG ++H KVG + +V+ AL D+Y G + D+ ++F
Sbjct: 218 DGFTIVSVLTACAEFGALALGRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIF 277
Query: 83 DELP-ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
+E+ R +V+W +I GL +G+ + EAL LF M E P+EIT++
Sbjct: 278 EEMGLGRTVVSWTSLIVGLAA-----NGFGK-----EALELFSLMER-EKLVPTEITMVG 326
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFD-----------IHVSNCLIDTYAKCGCIFS 190
VL A +C L+ GF FD I C++D + G +
Sbjct: 327 VLYA------CSHCGLV-----DDGFRYFDRMKEDYGISPRIEHLGCMVDLLGRAGRVEE 375
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
A ++ N V W T++ AMH + +ER+ V L P S
Sbjct: 376 AYDYIITMPLE-PNAVVWRTLLGSCAMHKKLELGKVAWERL--VELDPGHS 423
>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08510-like [Cucumis sativus]
Length = 512
Score = 178 bits (451), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 100/315 (31%), Positives = 172/315 (54%), Gaps = 39/315 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ ++++FL C +L G LH+ F K GF S ++ TAL DMY LG L+ + +LF
Sbjct: 81 NQYSFTFLFPACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLF 140
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
DE+P R++ TWN +I G ++ WT +I GY++ + +AL
Sbjct: 141 DEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALE 200
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF--NAFDIHVSNCLI 179
+F + + T+P+E++I +VLPA + G + + I Y GF NA+ VSN ++
Sbjct: 201 MFIGLENEKGTKPNEVSIASVLPACSQLGALDIGKRIEAYARNNGFFKNAY---VSNAVL 257
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+ +A+CG I A ++F++ ++NL SW T+I G A+HG +A++ +++M ++P+
Sbjct: 258 ELHARCGNIEEAQQVFDEIG-SKRNLCSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPD 316
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
+G EG + F+ M + +V P ++HYGCL+D+L RAG L++A +
Sbjct: 317 DVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLI 376
Query: 289 SGIPSQITNVVVWRT 303
+P + V+W T
Sbjct: 377 QNMP-MAPDSVIWGT 390
>gi|242047426|ref|XP_002461459.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
gi|241924836|gb|EER97980.1| hypothetical protein SORBIDRAFT_02g003000 [Sorghum bicolor]
Length = 568
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 170/307 (55%), Gaps = 29/307 (9%)
Query: 10 IYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY 69
+ +H+ PP D+ TY L++ C L G ++HA +K G + V+V +L +Y
Sbjct: 106 LALHARRLAPP--DTHTYPPLLQACARLLSLRHGERIHAEAAKNGLATLVFVKNSLVHLY 163
Query: 70 VSLGFLKDSSKLFDELP--ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA 127
+ G + + ++FDE+P ERNLV+WN +++G++ R NE L +FR M
Sbjct: 164 GACGLFESAHRVFDEIPVGERNLVSWN----------SMLNGFAANGRPNEVLTIFREML 213
Query: 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC 187
+ P T+++VL A + G + + +H Y K G + HV N LID YAKCG
Sbjct: 214 DVNFM-PDGFTVVSVLTASAEIGALALGRRVHVYLTKVGL-VENSHVGNALIDLYAKCGG 271
Query: 188 IFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-- 245
+ A ++FE+ R+ +VSWT++I G A++G GKEA+E F M++ L P +G
Sbjct: 272 VEDARRVFEEMGA-RRTVVSWTSLIVGLAVNGFGKEALELFGIMEREKLVPTEITMVGVL 330
Query: 246 ---------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQIT 296
++G +F++M EE + P I+H GC++D+L RAG++++A + +P +
Sbjct: 331 YACSHCGLVDDGFMYFNRMKEEYNIAPRIEHLGCMVDLLGRAGKVKEAYDYILTMPLE-P 389
Query: 297 NVVVWRT 303
N VVWRT
Sbjct: 390 NAVVWRT 396
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 13/197 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT ++ + LG ++H +KVG + +V AL D+Y G ++D+ ++F
Sbjct: 220 DGFTVVSVLTASAEIGALALGRRVHVYLTKVGLVENSHVGNALIDLYAKCGGVEDARRVF 279
Query: 83 DEL-PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
+E+ R +V+W +I GL ++G+ + EAL LF M E P+EIT++
Sbjct: 280 EEMGARRTVVSWTSLIVGLA-----VNGFGK-----EALELFGIMER-EKLVPTEITMVG 328
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL A G V + + ++ A I C++D + G + A ++
Sbjct: 329 VLYACSHCGLVDDGFMYFNRMKEEYNIAPRIEHLGCMVDLLGRAGKVKEAYDYILTMPLE 388
Query: 202 RKNLVSWTTIISGFAMH 218
N V W T++ AMH
Sbjct: 389 -PNAVVWRTLLGACAMH 404
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 93/210 (44%), Gaps = 16/210 (7%)
Query: 114 NRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIH 173
+R + ALAL R A P T +L A + +R+ + IH K G +
Sbjct: 100 SRPSLALALHARRLA----PPDTHTYPPLLQACARLLSLRHGERIHAEAAKNGLATL-VF 154
Query: 174 VSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
V N L+ Y CG SA ++F++ V +NLVSW ++++GFA +G E + F M
Sbjct: 155 VKNSLVHLYGACGLFESAHRVFDEIPVGERNLVSWNSMLNGFAANGRPNEVLTIFREMLD 214
Query: 234 VGLKPN---------RSWRIGEEGLKFFDKMVEECEVLPDIKHYG-CLIDILERAGRLEQ 283
V P+ S IG L + L + H G LID+ + G +E
Sbjct: 215 VNFMPDGFTVVSVLTASAEIGALALGRRVHVYLTKVGLVENSHVGNALIDLYAKCGGVED 274
Query: 284 AEEVASGIPSQITNVVVWRTGFLRLLINSY 313
A V + ++ T VV W + + L +N +
Sbjct: 275 ARRVFEEMGARRT-VVSWTSLIVGLAVNGF 303
>gi|242052493|ref|XP_002455392.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
gi|241927367|gb|EES00512.1| hypothetical protein SORBIDRAFT_03g010050 [Sorghum bicolor]
Length = 506
Score = 177 bits (449), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 163/293 (55%), Gaps = 38/293 (12%)
Query: 42 LGTQLHAVFSKVG-FQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGL 100
LG QLH++ + G S +V+ +L +Y + + D+ +F E+ R++V WNV+I G
Sbjct: 96 LGPQLHSLLLRTGHVASDTHVSASLVQLYCTCRHVADARSVFHEMAVRDVVAWNVMIAGY 155
Query: 101 VK---------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
VK WT +I GY++M R EA+ +FRRM E EP + +
Sbjct: 156 VKAGDLAHARELFDAMPERNVVSWTTVIGGYAQMRRPEEAVEVFRRMQV-EGIEPDGVAL 214
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
L+VL A G V + +H + +RG +I + N +ID Y KCGCI A ++FE
Sbjct: 215 LSVLSACGDLGAVDLGEWVHRFVVRRGLRQ-EIPLMNSIIDMYMKCGCIEKAVEVFE--G 271
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEG 248
++ K++V+WTT+I+GFA+HG+G +AVE F RM++ + PN + + G
Sbjct: 272 MEEKSVVTWTTLIAGFALHGLGLQAVEMFRRMERENMAPNDVTFLAILSACSHVGLTDLG 331
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+F+ MV + + P ++HYGC++D+L RAG L++A+++ +P + N +W
Sbjct: 332 RWYFNIMVSQYRIKPQVEHYGCMVDLLGRAGCLKEAQDLVKDMPLK-ANAAIW 383
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 105/233 (45%), Gaps = 42/233 (18%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D ++ C L +LG +H + G + + + ++ DMY+ G ++ + ++F
Sbjct: 210 DGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLRQEIPLMNSIIDMYMKCGCIEKAVEVF 269
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + E+++VT WT +I G++ +A+ +FRRM E P+++T LA+
Sbjct: 270 EGMEEKSVVT----------WTTLIAGFALHGLGLQAVEMFRRMER-ENMAPNDVTFLAI 318
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN-----------CLIDTYAKCGCIFSA 191
L A C + R + F+I VS C++D + GC+ A
Sbjct: 319 LSA---------CSHVGLTDLGRWY--FNIMVSQYRIKPQVEHYGCMVDLLGRAGCLKEA 367
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKPNRS 241
L +D + + N W +++ HG +G+EA+ + + L+P+ S
Sbjct: 368 QDLVKDMPL-KANAAIWGALLAASRTHGDADLGEEALVHL-----IELEPSNS 414
>gi|449477579|ref|XP_004155062.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Cucumis sativus]
Length = 602
Score = 177 bits (449), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 105/324 (32%), Positives = 178/324 (54%), Gaps = 38/324 (11%)
Query: 4 YKQLQQIYIHSHSPLPPLF------------DSFTYSFLIRTCVTLSYPNLGTQLHAVFS 51
Y + + Y S SPL L+ D + SF +++C+ L G Q+HA
Sbjct: 95 YNAMLRAYSLSRSPLEGLYMYRDMERQGVRADPLSSSFAVKSCIKLLSLLFGIQIHARIF 154
Query: 52 KVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYS 111
G Q+ + T++ D+Y G +++ KLFDE+P++++V WNV+I+ L +
Sbjct: 155 INGHQADSLLLTSMMDLYSHCGKPEEACKLFDEVPQKDVVAWNVLISCL----------T 204
Query: 112 RMNRSNEALALFRRMAACEY-TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF 170
R R+ +AL LF M + Y +P ++T L +L A + + IHGY ++ G+N
Sbjct: 205 RNKRTRDALGLFEIMQSPTYLCQPDKVTCLLLLQACADLNALEFGERIHGYIQQHGYNT- 263
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
+ ++ N LI Y++CG + A ++F+ + KN+VSW+ +ISG +M+G G+EA+E F
Sbjct: 264 ESNLCNSLISMYSRCGRMDKAYEVFDKMT--EKNVVSWSAMISGLSMNGHGREAIEAFWE 321
Query: 231 MQKVGLKPN-----------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
MQK G++P + +EG+ FFD+M +E + P++ HYGC++D+L RAG
Sbjct: 322 MQKNGVEPGDHTFTAVLSACSHCGLVDEGMAFFDRMRQEFMIAPNVHHYGCIVDLLGRAG 381
Query: 280 RLEQAEEVASGIPSQITNVVVWRT 303
L+QA E+ + + + +WRT
Sbjct: 382 MLDQAYELIMSMEVR-PDATMWRT 404
>gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group]
Length = 602
Score = 177 bits (448), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 158/295 (53%), Gaps = 29/295 (9%)
Query: 23 DSFTYSFLIRTCVTL-SYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG--FLKDSS 79
+ FT+ FL++ C L P++G Q HA K GF + YV+ L MY G FL D+
Sbjct: 125 NKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDAR 184
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
+FD +P+ + VTW + +I GY R S++A+ LFR M A + E+T+
Sbjct: 185 NVFDRMPKESAVTW----------SAMIGGYVRGGLSSDAVELFREMQA-NGVQADEVTV 233
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+ VL A G + + + + E+ G + + N LIDT AKCG + A +FE
Sbjct: 234 IGVLAAATDLGALELARWVRRFVEREGIGK-SVTLCNALIDTLAKCGDVDGAVAVFE--G 290
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
+ ++++VSWT++I AM G GKEAV FE M+ G+ P+ IG +EG
Sbjct: 291 MQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEG 350
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+FD M E + P I+HYGC++D+ RAG +E+A E +P Q N V+WR+
Sbjct: 351 CGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQ-PNPVIWRS 404
>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Vitis vinifera]
Length = 513
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 172/317 (54%), Gaps = 36/317 (11%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76
P P + + Y+ LI+ C L G ++HAV K G +++++ T+L DMY
Sbjct: 106 PSAPNPNEYIYTSLIKACAGLEAIADGLKVHAVVIKSGLDNNIHLGTSLVDMYFKFREPA 165
Query: 77 DSSKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNR 115
+ ++FDE+P R++V+WN +++G ++ W +I GY + +
Sbjct: 166 SAGQVFDEMPLRDVVSWNTMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGYVQNGK 225
Query: 116 SNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS 175
++A+ +F M P ++T+++VL A G + + I + RG ++++
Sbjct: 226 YSDAIEVFHEMQKVGGVVPDDVTLVSVLSACAHVGALDFGRWIDRFVGWRG-RGLNLYLG 284
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
N LID YAKCG + A ++F+ + ++++SW+T+I G HG EA + +M + G
Sbjct: 285 NALIDMYAKCGTMEEARRIFD--GMRERDVISWSTMICGSGTHGDADEAFGYYSKMLECG 342
Query: 236 LKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
+KPN +G ++G++ F +M++E ++P + HYGC+ID+L RAGRL++A
Sbjct: 343 VKPNEVTFMGLLSACSHAGLVDKGIELFSRMIQEYRIVPKVGHYGCVIDLLSRAGRLDEA 402
Query: 285 EEVASGIPSQITNVVVW 301
E++ + +P + NV+VW
Sbjct: 403 EDLINSMPIE-PNVIVW 418
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/268 (23%), Positives = 109/268 (40%), Gaps = 62/268 (23%)
Query: 81 LFDELPERNLVTWNVIITGLVK---WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
+F +LP N+ +WN II + W ++ ++R L+L EY S I
Sbjct: 67 IFAQLPNPNVFSWNAIIKAHINCGAWEHALNCFNRQ------LSLPSAPNPNEYIYTSLI 120
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK------------- 184
A L AI +V H K G + +IH+ L+D Y K
Sbjct: 121 KACAGLEAIADGLKV------HAVVIKSGLDN-NIHLGTSLVDMYFKFREPASAGQVFDE 173
Query: 185 ------------------CGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVE 226
CG + SA ++F D ++R +++SW +I G+ +G +A+E
Sbjct: 174 MPLRDVVSWNTMVSGYCLCGDLESARRVF-DQMLER-DVISWNAMIGGYVQNGKYSDAIE 231
Query: 227 NFERMQKV-GLKPNR---------SWRIGEEGL-KFFDKMVEECEVLPDIKHYGCLIDIL 275
F MQKV G+ P+ +G ++ D+ V ++ LID+
Sbjct: 232 VFHEMQKVGGVVPDDVTLVSVLSACAHVGALDFGRWIDRFVGWRGRGLNLYLGNALIDMY 291
Query: 276 ERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ G +E+A + G+ + +V+ W T
Sbjct: 292 AKCGTMEEARRIFDGMRER--DVISWST 317
>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Brachypodium distachyon]
Length = 598
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 165/307 (53%), Gaps = 29/307 (9%)
Query: 10 IYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY 69
+ +H PP D+ TY L++ C L G LHA K G S V+V +L +Y
Sbjct: 110 LALHRRHLAPP--DTHTYPPLLQACARLLALRYGEGLHAEACKNGLVSLVFVKNSLVHLY 167
Query: 70 VSLGFLKDSSKLFDELP--ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA 127
+ G + + ++FDE+P ERNLV+WN +++G++ R NE L +FR M
Sbjct: 168 GACGLFESAHRVFDEIPPPERNLVSWN----------SVLNGFAANGRPNEVLTVFREML 217
Query: 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC 187
E+ P T+++VL A + G + + +H + K G + H N LID YAKCG
Sbjct: 218 EVEFA-PDGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVG-NAHAGNALIDLYAKCGG 275
Query: 188 IFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-- 245
+ A K+F + V R +VSWT++I G A++G G +A++ F M++ L P +G
Sbjct: 276 VDDARKMFGEMGVGR-TVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVL 334
Query: 246 ---------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQIT 296
++G ++FD+M E + P I+H GC++D+L RAGR+E+A + +P +
Sbjct: 335 YACSHCGLVDDGFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLE-P 393
Query: 297 NVVVWRT 303
N VVWRT
Sbjct: 394 NAVVWRT 400
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 89/208 (42%), Gaps = 35/208 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT ++ C + LG ++H +KVG + + AL D+Y G + D+ K+F
Sbjct: 224 DGFTVVSVLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMF 283
Query: 83 DELP-ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
E+ R +V+W +I GL ++G+ +AL LF M E P+EIT++
Sbjct: 284 GEMGVGRTVVSWTSLIVGLA-----VNGFGM-----DALQLFSMMER-EKLMPTEITMVG 332
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFD-----------IHVSNCLIDTYAKCGCIFS 190
VL A G V + GF FD I C++D + G +
Sbjct: 333 VLYACSHCGLVDD-----------GFRYFDQMKAEYGITPRIEHLGCMVDLLGRAGRVEE 381
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMH 218
A ++ N V W T++ AMH
Sbjct: 382 AHNYITTMPLE-PNAVVWRTLLGACAMH 408
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 5/130 (3%)
Query: 110 YSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNA 169
++ R ALAL RR A P T +L A + +R + +H K G +
Sbjct: 100 FASSARPRVALALHRRHLA----PPDTHTYPPLLQACARLLALRYGEGLHAEACKNGLVS 155
Query: 170 FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFE 229
+ V N L+ Y CG SA ++F++ +NLVSW ++++GFA +G E + F
Sbjct: 156 L-VFVKNSLVHLYGACGLFESAHRVFDEIPPPERNLVSWNSVLNGFAANGRPNEVLTVFR 214
Query: 230 RMQKVGLKPN 239
M +V P+
Sbjct: 215 EMLEVEFAPD 224
>gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group]
gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group]
gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group]
gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 602
Score = 176 bits (446), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 158/295 (53%), Gaps = 29/295 (9%)
Query: 23 DSFTYSFLIRTCVTL-SYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG--FLKDSS 79
+ FT+ FL++ C L P++G Q HA K GF + YV+ L MY G FL D+
Sbjct: 125 NKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDAR 184
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
+FD +P+ + VTW + +I GY R S++A+ LFR M A + E+T+
Sbjct: 185 NVFDRMPKESAVTW----------SAMIGGYVRGGLSSDAVDLFREMQA-NGVQADEVTV 233
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+ VL A G + + + + E+ G + + N LIDT AKCG + A +FE
Sbjct: 234 IGVLAAATDLGALELARWVRRFVEREGIGK-SVTLCNALIDTLAKCGDVDGAVAVFE--G 290
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
+ ++++VSWT++I AM G GKEAV FE M+ G+ P+ IG +EG
Sbjct: 291 MQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEG 350
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+FD M E + P I+HYGC++D+ RAG +E+A E +P Q N V+WR+
Sbjct: 351 CGYFDAMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQ-PNPVIWRS 404
>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
Length = 631
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/331 (33%), Positives = 166/331 (50%), Gaps = 49/331 (14%)
Query: 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF 74
H LP D+FT +I+ C L G Q+H + K+GF S V+V +L +MY G
Sbjct: 109 HEYLP---DNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGE 165
Query: 75 LKDSSKLFDELPERNLVTWNVIITG-LVKWTGIIDGYSRMNRSNEALALFRRMAACEY-- 131
+ + K+FD + ++++V WN +I G LV W +I+GY + + AL LF +M +
Sbjct: 166 IDCARKVFDGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVT 225
Query: 132 ----------------------------TEPSEITILAVLPAIWKNGEVRNCQLIHGYGE 163
+ PS T+++VL A+ + + IH Y E
Sbjct: 226 WNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYME 285
Query: 164 KRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKE 223
K GF D + LI+ YAKCGCI SA +F ++ +K + WT II G +HGM
Sbjct: 286 KNGFE-LDGILGTSLIEMYAKCGCIESALTVFR--AIQKKKVGHWTAIIVGLGIHGMANH 342
Query: 224 AVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLI 272
A+ F M K GLKPN IG ++G ++FD M+ E ++ P ++HYGCL+
Sbjct: 343 ALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLV 402
Query: 273 DILERAGRLEQAEEVASGIPSQITNVVVWRT 303
DIL RAG LE+A+ +P N V+W +
Sbjct: 403 DILCRAGHLEEAKNTIENMPIS-PNKVIWMS 432
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 102/228 (44%), Gaps = 26/228 (11%)
Query: 16 SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS--LG 73
+P L ++ + T S P QLHA K +H +V++ L +Y +
Sbjct: 5 TPFHSLQQYLPHNLHLSLFQTCSAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKIN 64
Query: 74 FLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE 133
L + +FD + R+L+ WN II Y S++ + LF + EY
Sbjct: 65 DLGYARSIFDRIQRRSLIHWNTIIK----------CYVENQFSHDGIVLFHELVH-EYL- 112
Query: 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASK 193
P T+ V+ + G V+ + IHG K GF + D+ V L++ Y+KCG I A K
Sbjct: 113 PDNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGS-DVFVQGSLVNMYSKCGEIDCARK 171
Query: 194 LFEDTSVDRK----------NLVSWTTIISGFAMHGMGKEAVENFERM 231
+F D +D+ NLVSW +I+G+ G A+E F +M
Sbjct: 172 VF-DGMIDKDVVLWNSLIDGNLVSWNAMINGYMKSGDFDSALELFYQM 218
>gi|357138796|ref|XP_003570973.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 472
Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 104/282 (36%), Positives = 154/282 (54%), Gaps = 26/282 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++T+ FLI C + S P L LH +VG+ SH++ TAL +MY G + ++F
Sbjct: 119 DTYTFPFLIHAC-SGSDPPLCESLHGQSIRVGYSSHLFTQTALMNMYFVCGLAAPARRVF 177
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA-ACEYTEPSEITILA 141
DE+ R++V W TG++ GY EA+ +F+ M E P+ TI++
Sbjct: 178 DEMQARDVVVW----------TGMVSGYVDTGMHLEAVEVFQEMRRGEEVASPNVATIVS 227
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
V A G + + +HGY EK GF + D+ V+N L+D Y KCG + SA LF +
Sbjct: 228 VASACAGLGSLEYAKWLHGYVEKLGFGS-DLIVTNALMDMYGKCGGVESARALF--NLMH 284
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
K+L SWTTIISG A HG KE + F MQK+G+ P+ + I +EG+
Sbjct: 285 EKDLHSWTTIISGLASHGHVKEGLALFSSMQKMGVLPDSTTFIVVLSACSHAGLVDEGMC 344
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
F+ M + +V PDIKHYGC++D+ RAG L +A ++ +P
Sbjct: 345 IFNSMESKYKVTPDIKHYGCMVDLFSRAGLLSRAFQLIDSMP 386
>gi|356513527|ref|XP_003525465.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Glycine max]
Length = 579
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 162/293 (55%), Gaps = 26/293 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D + SF +++C+ Y G Q+H K G Q + TA+ D+Y D+ K+F
Sbjct: 103 DPLSSSFAVKSCIRFLYLPGGVQVHCNIFKDGHQWDTLLLTAVMDLYSLCQRGGDACKVF 162
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY-TEPSEITILA 141
DE+P R+ V WNV+I+ + R NR+ +AL+LF M Y EP ++T L
Sbjct: 163 DEMPHRDTVAWNVMISCCI----------RNNRTRDALSLFDVMQGSSYKCEPDDVTCLL 212
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+L A + + IHGY +RG+ +++ N LI Y++CGC+ A ++F+ +
Sbjct: 213 LLQACAHLNALEFGERIHGYIMERGYRDA-LNLCNSLISMYSRCGCLDKAYEVFK--GMG 269
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
KN+VSW+ +ISG AM+G G+EA+E FE M ++G+ P+ G +EG+
Sbjct: 270 NKNVVSWSAMISGLAMNGYGREAIEAFEEMLRIGVLPDDQTFTGVLSACSYSGMVDEGMS 329
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
FF +M E V P++ HYGC++D+L RAG L++A ++ + + + +WRT
Sbjct: 330 FFHRMSREFGVTPNVHHYGCMVDLLGRAGLLDKAYQLIMSMVVK-PDSTMWRT 381
>gi|297724167|ref|NP_001174447.1| Os05g0439300 [Oryza sativa Japonica Group]
gi|46981301|gb|AAT07619.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
gi|215769333|dbj|BAH01562.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255676403|dbj|BAH93175.1| Os05g0439300 [Oryza sativa Japonica Group]
Length = 551
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 163/303 (53%), Gaps = 37/303 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FTY FL++ C + LG Q+H + G S V +L +MY G L + K+F
Sbjct: 118 DRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVF 177
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
DE+ ER++V+WN++I+ +V WT ++ GY+ + A+
Sbjct: 178 DEMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVD 237
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
FR M E EP +++I+AVLPA + G + + I+ Y ++ G H+ N L++
Sbjct: 238 AFRSMQT-EGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGM-LTSTHICNALMEM 295
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-LKPNR 240
YAKCGCI A +LF+ + K+++SW+T+I G A HG EAV F M+K G ++PN
Sbjct: 296 YAKCGCIDQALQLFDGMA--DKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNV 353
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
+G +EGL FD+M + V P ++HYGC++D+L R+G++ +A ++
Sbjct: 354 ITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVR 413
Query: 290 GIP 292
+P
Sbjct: 414 DMP 416
>gi|225457409|ref|XP_002282049.1| PREDICTED: pentatricopeptide repeat-containing protein At3g47530
[Vitis vinifera]
Length = 643
Score = 175 bits (443), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 105/326 (32%), Positives = 183/326 (56%), Gaps = 42/326 (12%)
Query: 4 YKQLQQIYIHSHSP--------------LPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAV 49
Y + + Y SHSP +PP + + SF++++C+ +S G Q+HA
Sbjct: 136 YNVMIRAYSMSHSPEQGFYLYREMRRRGVPP--NPLSSSFVMKSCIRISSLMGGLQIHAR 193
Query: 50 FSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDG 109
+ G QS + T L D+Y +++ K+FDE+P+ + V+WNV+I+ +
Sbjct: 194 ILRDGHQSDNLLLTTLMDLYSCCDKFEEACKVFDEIPQWDTVSWNVLISCCI-------- 245
Query: 110 YSRMNRSNEALALFRRM-AACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN 168
++R R+ +AL +F M + + EP ++T L +L A G + + +H Y E+ G++
Sbjct: 246 HNR--RTRDALRMFDIMQSTADGFEPDDVTCLLLLQACANLGALEFGERVHNYIEEHGYD 303
Query: 169 AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENF 228
+++ N LI Y++CG + A +F+ +D +N+VSW+ +ISGFAMHG G+EA+E F
Sbjct: 304 GA-LNLCNSLITMYSRCGRLEKAYSIFK--RMDERNVVSWSAMISGFAMHGYGREAIEAF 360
Query: 229 ERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILER 277
E+MQ++G+ P+ G ++GL FFD+M + + P+I HYGC++D+L R
Sbjct: 361 EQMQQLGVSPDDQTLTGVLSACSHCGLVDDGLMFFDRMSKVFGIEPNIHHYGCMVDLLGR 420
Query: 278 AGRLEQAEEVASGIPSQITNVVVWRT 303
AG L+QA ++ + + + +WRT
Sbjct: 421 AGLLDQAYQLIMSMVIK-PDSTLWRT 445
>gi|222631730|gb|EEE63862.1| hypothetical protein OsJ_18686 [Oryza sativa Japonica Group]
Length = 551
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 163/303 (53%), Gaps = 37/303 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FTY FL++ C + LG Q+H + G S V +L +MY G L + K+F
Sbjct: 118 DRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVF 177
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
DE+ ER++V+WN++I+ +V WT ++ GY+ + A+
Sbjct: 178 DEMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVD 237
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
FR M E EP +++I+AVLPA + G + + I+ Y ++ G H+ N L++
Sbjct: 238 AFRSMQT-EGFEPDDVSIVAVLPACAQLGTLELGRWIYAYCKRHGM-LTSTHICNALMEM 295
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-LKPNR 240
YAKCGCI A +LF+ + K+++SW+T+I G A HG EAV F M+K G ++PN
Sbjct: 296 YAKCGCIDQALQLFDGMA--DKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNV 353
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
+G +EGL FD+M + V P ++HYGC++D+L R+G++ +A ++
Sbjct: 354 ITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVR 413
Query: 290 GIP 292
+P
Sbjct: 414 DMP 416
>gi|125552488|gb|EAY98197.1| hypothetical protein OsI_20110 [Oryza sativa Indica Group]
Length = 551
Score = 175 bits (443), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 101/303 (33%), Positives = 163/303 (53%), Gaps = 37/303 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FTY FL++ C + LG Q+H + G S V +L +MY G L + K+F
Sbjct: 118 DRFTYPFLLKACGGTAALELGKQVHTHVVRSGCDSSAIVQNSLIEMYTRAGDLALAHKVF 177
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
DE+ ER++V+WN++I+ +V WT ++ GY+ + A+
Sbjct: 178 DEMRERDVVSWNMLISAHARLGQMRKATALFNSMPDKTIVTWTAMVSGYTTVGDYPGAVD 237
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
FR M E EP +++I+AVLPA + G + + I+ Y ++ G H+ N L++
Sbjct: 238 AFRSMQT-EGFEPDDVSIVAVLPACAQLGALELGRWIYAYCKRHGM-LTSTHICNALMEM 295
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-LKPNR 240
YAKCGCI A +LF+ + K+++SW+T+I G A HG EAV F M+K G ++PN
Sbjct: 296 YAKCGCIDQALQLFDGMA--DKDVISWSTVIGGLAAHGRAHEAVWLFTEMEKEGKVRPNV 353
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
+G +EGL FD+M + V P ++HYGC++D+L R+G++ +A ++
Sbjct: 354 ITFVGLLSACSYAGLVDEGLSHFDRMNDVYGVEPGVEHYGCVVDLLGRSGQIRRALDLVR 413
Query: 290 GIP 292
+P
Sbjct: 414 DMP 416
>gi|357467379|ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355493022|gb|AES74225.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 566
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 169/302 (55%), Gaps = 29/302 (9%)
Query: 13 HSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL 72
H++ P P D+FTYSF +++C L QLH +K+GF +Y+ AL MY +
Sbjct: 83 HTNVPKP---DTFTYSFALKSCGRLKLTQQAKQLHGFINKMGFGFDLYIQNALIHMYSEI 139
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT 132
G L + ++FD + R++V+ WT +I G+ + + EA+ LF+RM
Sbjct: 140 GELVIARQVFDRMSHRDVVS----------WTSMIAGFVNHHLTVEAIQLFQRMLEVG-V 188
Query: 133 EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSAS 192
+ +E T+++VL +G + + +HG +++G + F +V LI Y+KCGC+ SA
Sbjct: 189 DVNEATVISVLRGCADSGALSVGRKVHGIVKEKGID-FKANVCTALIHMYSKCGCLESAR 247
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RS 241
++F+D +DR V WT +I G A HGM KEA+E F M+ +KP+ R+
Sbjct: 248 EVFDDV-LDRDVFV-WTAMIYGLACHGMCKEAIELFLEMETCNVKPDERTIMVVLSAYRN 305
Query: 242 WRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ EG FF+ + + + P+IKH+GC++D+L + G LE+AE+ + +P + + V+W
Sbjct: 306 AGLVREGYMFFNDVQKRYSMKPNIKHFGCMVDLLAKGGCLEEAEDFINAMPMK-PDAVIW 364
Query: 302 RT 303
RT
Sbjct: 365 RT 366
>gi|449508637|ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Cucumis sativus]
Length = 594
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 112/317 (35%), Positives = 180/317 (56%), Gaps = 32/317 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+SF++S R C ++S + G Q+HA +K G V ++ DMY +L D+ + F
Sbjct: 210 NSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCF 269
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
EL E+NL+TWN +I GY R + S+E+L+LF +M + E +P+ T ++
Sbjct: 270 GELTEKNLITWNTLIA----------GYERSD-SSESLSLFFQMGS-EGYKPNCFTFTSI 317
Query: 143 LPAIWKNGEVRNC-QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
A N V +C Q +HG +RGF+ ++ + N LID YAKCG I + KLF D +
Sbjct: 318 TAAC-ANLAVLSCGQQVHGGIVRRGFDK-NVALINSLIDMYAKCGSISDSHKLFCD--MP 373
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
++LVSWTT++ G+ HG GKEAV+ F+ M + G++P+R +G ++GLK
Sbjct: 374 GRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLK 433
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLI 310
+F M+E+ + PD + Y C++D+L RAGR+E+A ++ +P + + VW G L
Sbjct: 434 YFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMPFE-PDESVW--GALLGAC 490
Query: 311 NSYFFSPI-TLNSQRLF 326
+Y S + L +QR+
Sbjct: 491 KAYKLSNLGNLAAQRVL 507
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 101/218 (46%), Gaps = 16/218 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY-VSLGFLKDSSKL 81
++FT S +++ C + + G H++ +K G VYV AL DMY S + D+ +
Sbjct: 108 NAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSV 167
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+++P + V+W +I G T DGYS L FR+M E P+ +
Sbjct: 168 FNDIPLKTAVSWTTLIAGF---THRGDGYS-------GLLAFRQMLL-EDVGPNSFSFSI 216
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
A + IH K G + D V N ++D Y +C + A + F + +
Sbjct: 217 AARACASISSYSCGKQIHAAVTKYGLHC-DAPVMNSILDMYCRCNYLCDAKRCFGELT-- 273
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
KNL++W T+I+G+ E++ F +M G KPN
Sbjct: 274 EKNLITWNTLIAGYERSD-SSESLSLFFQMGSEGYKPN 310
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 17/179 (9%)
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
T L Y G +++ LF+E+PER++VT WT +I G++ N ++A +
Sbjct: 47 TNLIKSYFDKGLTREACNLFNEIPERDVVT----------WTAMIVGFTSCNHYHQAWTM 96
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNC-QLIHGYGEKRGFNAFDIHVSNCLIDT 181
F M E +P+ T+ +VL A K + +C L H K G + ++V N L+D
Sbjct: 97 FSEMLRSE-VQPNAFTMSSVLKAC-KGMKALSCGALAHSLATKHGIDR-SVYVQNALLDM 153
Query: 182 Y-AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
Y A C + A +F D + K VSWTT+I+GF G G + F +M + PN
Sbjct: 154 YAASCATMDDALSVFND--IPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPN 210
>gi|449435950|ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Cucumis sativus]
Length = 606
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 112/317 (35%), Positives = 180/317 (56%), Gaps = 32/317 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+SF++S R C ++S + G Q+HA +K G V ++ DMY +L D+ + F
Sbjct: 210 NSFSFSIAARACASISSYSCGKQIHAAVTKYGLHCDAPVMNSILDMYCRCNYLCDAKRCF 269
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
EL E+NL+TWN +I GY R + S+E+L+LF +M + E +P+ T ++
Sbjct: 270 GELTEKNLITWNTLIA----------GYERSD-SSESLSLFFQMGS-EGYKPNCFTFTSI 317
Query: 143 LPAIWKNGEVRNC-QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
A N V +C Q +HG +RGF+ ++ + N LID YAKCG I + KLF D +
Sbjct: 318 TAAC-ANLAVLSCGQQVHGGIVRRGFDK-NVALINSLIDMYAKCGSISDSHKLFCD--MP 373
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
++LVSWTT++ G+ HG GKEAV+ F+ M + G++P+R +G ++GLK
Sbjct: 374 GRDLVSWTTMMIGYGAHGYGKEAVKLFDEMVQSGIQPDRIVFMGVLCGCSHAGLVDKGLK 433
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLI 310
+F M+E+ + PD + Y C++D+L RAGR+E+A ++ +P + + VW G L
Sbjct: 434 YFRSMLEDYNINPDQEIYRCVVDLLGRAGRVEEAFQLVENMPFE-PDESVW--GALLGAC 490
Query: 311 NSYFFSPI-TLNSQRLF 326
+Y S + L +QR+
Sbjct: 491 KAYKLSNLGNLAAQRVL 507
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 102/218 (46%), Gaps = 16/218 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY-VSLGFLKDSSKL 81
++FT S +++ C + + G H++ +K G VYV AL DMY S + D+ +
Sbjct: 108 NAFTMSSVLKACKGMKALSCGALAHSLATKHGIDRSVYVQNALLDMYAASCATMDDALSV 167
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+++P + V+W +I G +T DGYS L FR+M E P+ +
Sbjct: 168 FNDIPLKTAVSWTTLIAG---FTHRGDGYS-------GLLAFRQMLL-EDVGPNSFSFSI 216
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
A + IH K G + D V N ++D Y +C + A + F + +
Sbjct: 217 AARACASISSYSCGKQIHAAVTKYGLHC-DAPVMNSILDMYCRCNYLCDAKRCFGELT-- 273
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
KNL++W T+I+G+ E++ F +M G KPN
Sbjct: 274 EKNLITWNTLIAGYE-RSDSSESLSLFFQMGSEGYKPN 310
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/179 (31%), Positives = 88/179 (49%), Gaps = 17/179 (9%)
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
T L Y G +++ LF+E+PER++VT WT +I G++ N ++A +
Sbjct: 47 TNLIKSYFDKGLTREACNLFNEIPERDVVT----------WTAMIVGFTSCNHYHQAWTM 96
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNC-QLIHGYGEKRGFNAFDIHVSNCLIDT 181
F M E +P+ T+ +VL A K + +C L H K G + ++V N L+D
Sbjct: 97 FSEMLRSE-VQPNAFTMSSVLKAC-KGMKALSCGALAHSLATKHGIDR-SVYVQNALLDM 153
Query: 182 Y-AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
Y A C + A +F D + K VSWTT+I+GF G G + F +M + PN
Sbjct: 154 YAASCATMDDALSVFND--IPLKTAVSWTTLIAGFTHRGDGYSGLLAFRQMLLEDVGPN 210
>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 663
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 164/320 (51%), Gaps = 41/320 (12%)
Query: 19 PPLFDSFTYSFLIRTCVTLSYPNL---GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL 75
P D +T++F+ C +P L G +H + K G++S ++V +L +MY +
Sbjct: 151 PTSADKYTFTFVFTACS--RHPTLRGYGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRM 208
Query: 76 KDSSKLFDELPERNLVTWNVIITGL---------------------VKWTGIIDGYSRMN 114
D+ ++FDE+P+R+++TW ++ G V W ++ GY
Sbjct: 209 VDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMPGRNDVSWAVMVAGYVGHR 268
Query: 115 RSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHV 174
NEAL F M + +P+E ++++L A G + + IH Y +K ++
Sbjct: 269 FYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGKWIHVYIDKNRI-LLSSNI 327
Query: 175 SNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
S LID YAKCG I A ++F+ + +++L++WT++ISG +MHG+G E + F M
Sbjct: 328 STALIDMYAKCGRIDCARRVFD--GLHKRDLLTWTSMISGLSMHGLGAECLWTFSEMLAE 385
Query: 235 GLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQ 283
G KP+ +G EEGL F M+ ++P ++HYGCLID+L RAGRLE
Sbjct: 386 GFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHYGCLIDLLGRAGRLES 445
Query: 284 AEEVASGIPSQITNVVVWRT 303
A E +P + +VV WR
Sbjct: 446 AFEAIKSMPME-PDVVAWRA 464
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 130/301 (43%), Gaps = 34/301 (11%)
Query: 4 YKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTL-----SYPNLG--TQLHAVFSKVGFQ 56
Y Q +YI S++ S T SF + + T P+L Q+HA G
Sbjct: 25 YVQSPLVYISSNTSSAIWEPSGTSSFSLPSHSTFVQLLKKRPSLTQIKQIHAQVVTHGLA 84
Query: 57 SHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRS 116
+ + L Y+ L + +FD+ P + + W +I YS+ S
Sbjct: 85 QNTSLLGPLIHSYIGCRNLSFARIVFDQFPS---------LPPTIIWNLMIQAYSKTPSS 135
Query: 117 NEALALFRRM-AACEYTEPSEITILAVLPAIWKNGEVRN-CQLIHGYGEKRGFNAFDIHV 174
E+L LF +M A T + T V A ++ +R + +HG K G+ + DI V
Sbjct: 136 QESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYES-DIFV 194
Query: 175 SNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
N L++ Y+ + A ++F++ + ++++++WT+++ G+AM G A E F+ M
Sbjct: 195 GNSLVNMYSIFSRMVDAKRVFDE--MPQRDVITWTSVVKGYAMRGELVRARELFDMMPG- 251
Query: 235 GLKPNRSW----------RIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
+ + SW R E L+ F+ M+ EV P+ ++ G L+Q
Sbjct: 252 --RNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQG 309
Query: 285 E 285
+
Sbjct: 310 K 310
>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 102/301 (33%), Positives = 161/301 (53%), Gaps = 34/301 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FTY FL++ C + + +HA K+GF ++V +L D Y LG L ++ +LF
Sbjct: 114 DNFTYPFLLKACSGKVWVRVVEMIHAQVEKMGFCLDIFVPNSLIDSYFKLGELGEARRLF 173
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI----- 137
DE+PER+ V+WN I+DGY + N A LF +M A S +
Sbjct: 174 DEMPERDTVSWNT----------ILDGYVKAGEMNAAFELFEKMPARNVVSWSTMEAGLK 223
Query: 138 ----TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASK 193
T++++L A +G + + +H E+ F VSN LID YAKCG + +A
Sbjct: 224 FDDGTVISILSACAVSGLLGLGKRVHASIERTRFKC-STPVSNALIDMYAKCGSLENALS 282
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-------- 245
+F + RK++VSW II G AMHG G++A++ F RM+ G P++ +G
Sbjct: 283 IFH--GMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHA 340
Query: 246 ---EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
+EGL +F M + V P+++HYGC++D+L R GRL++A + +P + N ++W
Sbjct: 341 GFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLE-PNAIIWG 399
Query: 303 T 303
T
Sbjct: 400 T 400
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 94/216 (43%), Gaps = 14/216 (6%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD T ++ C LG ++HA + F+ V+ AL DMY G L+++ +
Sbjct: 224 FDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSI 283
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F + +++V+WN II GL + G+ +AL LF RM + P ++T +
Sbjct: 284 FHGMVRKDVVSWNAIIQGLA-----MHGHGE-----KALQLFSRMKGEGFV-PDKVTFVG 332
Query: 142 VLPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
VL A G V H G ++ C++D + G + A +L +
Sbjct: 333 VLCACTHAGFVDEGLHYFHAMERDYGVPP-EVEHYGCMVDLLGRGGRLKEAFRLVHSMPL 391
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
+ N + W T++ MH A E F+R+ K L
Sbjct: 392 E-PNAIIWGTLLGACRMHSATGLAEEVFDRLVKSEL 426
>gi|357501951|ref|XP_003621264.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496279|gb|AES77482.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 519
Score = 174 bits (441), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 108/344 (31%), Positives = 170/344 (49%), Gaps = 67/344 (19%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTAL-------GDM------- 68
DS+T+ F+++ C L + N G+ +H + ++GF S+ V L GD+
Sbjct: 107 DSYTFPFVLKACTRLFWVNTGSAVHGMVLRLGFGSNAVVRNTLLVFHAKCGDLNVATSLF 166
Query: 69 -----------------YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK--------- 102
Y G LK + KLF+E+PER+LV+WNV+ITG VK
Sbjct: 167 DDSCKGDVVAWSSLIAGYARRGDLKVARKLFNEMPERDLVSWNVMITGYVKQGEMESARM 226
Query: 103 ------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
W +I GY S +AL LF M P E+T+L++L A G
Sbjct: 227 LFDEAPVKDVVSWNAMIAGYVVCGLSKQALELFNEMCRAGVF-PDEVTLLSLLSACADLG 285
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
++ N + +H + + N LID YAKCG I + +F S+ K+++SW +
Sbjct: 286 DLENGKKVHAKVMEISMGKLSTLLGNALIDMYAKCGNIKESLDVF--WSITDKDVISWNS 343
Query: 211 IISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEEC 259
+I G A+HG GKE++ F+ MQ+ + PN +G +EG K+FD M E
Sbjct: 344 VIVGMALHGHGKESLSLFKMMQRTKICPNEITFVGVLVACSHAGEIDEGYKYFDLMSSEY 403
Query: 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++ P+I+H GC++D+L RAG L++A + + + N ++WRT
Sbjct: 404 KIEPNIRHCGCMVDMLGRAGLLKEAAKFIDSMKIE-PNAIIWRT 446
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 101/226 (44%), Gaps = 38/226 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKL 81
D T L+ C L G ++HA ++ + + AL DMY G +K+S +
Sbjct: 270 DEVTLLSLLSACADLGDLENGKKVHAKVMEISMGKLSTLLGNALIDMYAKCGNIKESLDV 329
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F + ++++++WN +I G+ + G+ + E+L+LF+ M + P+EIT +
Sbjct: 330 FWSITDKDVISWNSVIVGMA-----LHGHGK-----ESLSLFKMMQRTKIC-PNEITFVG 378
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS-----------NCLIDTYAKCGCIFS 190
VL A GE+ G+ FD+ S C++D + G +
Sbjct: 379 VLVACSHAGEI-----------DEGYKYFDLMSSEYKIEPNIRHCGCMVDMLGRAGLLKE 427
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQK 233
A+K + ++ N + W T+++ +HG + K A E M+K
Sbjct: 428 AAKFIDSMKIE-PNAIIWRTLLAACKVHGDVELAKVANEKLFSMRK 472
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 103/220 (46%), Gaps = 33/220 (15%)
Query: 38 SYPNLGT--QLHAVFSKVGFQSHVYVNTALGDMYVSLG-----------FLKDSSKLFDE 84
+ PNL T Q+HA+ GF ++V LGD+ +++ + +LF +
Sbjct: 11 TLPNLKTLKQIHALMIINGFNNNV---NFLGDLVLTISTSLVGPTATPTVTNYAHQLFAQ 67
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+P+ + +NV+I G S+ A++L+ M + + T VL
Sbjct: 68 IPQPDTFMYNVMIR----------GSSQSPNPLRAISLYTEMHR-HFVKGDSYTFPFVLK 116
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A + V +HG + GF + + V N L+ +AKCG + A+ LF+D+ + +
Sbjct: 117 ACTRLFWVNTGSAVHGMVLRLGFGSNAV-VRNTLLVFHAKCGDLNVATSLFDDSC--KGD 173
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI 244
+V+W+++I+G+A G K A + F M + L SW +
Sbjct: 174 VVAWSSLIAGYARRGDLKVARKLFNEMPERDLV---SWNV 210
>gi|449446363|ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g34160-like [Cucumis sativus]
Length = 576
Score = 174 bits (440), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 163/293 (55%), Gaps = 26/293 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D+ T SF ++ C + QLH+ + GF + V + T L D Y +G L + KL
Sbjct: 101 IDALTCSFALKACARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKL 160
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FDE+P+ ++ +WN +I G+++ +R +A+ F+RM P+ +T+
Sbjct: 161 FDEMPQPDIASWNALIA----------GFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQG 210
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A + G ++ + +H Y + N+ ++ V N +ID YAKCG + A +FE+ D
Sbjct: 211 ALLACSQLGALKEGESVHKYIVEEKLNS-NVQVCNVVIDMYAKCGSMDKAYWVFENMRCD 269
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
K+L++W T+I FAMHG G +A++ FE++ + G+ P+ + E+GLK
Sbjct: 270 -KSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLK 328
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ M + + P+IKHYG ++D+L RAGRL++A ++ S +P N+V+W+T
Sbjct: 329 LFNSMTQR-GLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLP--FPNMVLWQT 378
>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
Length = 1309
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 155/273 (56%), Gaps = 25/273 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++T F+IR C L +G +H + K G +V AL DMYV ++D+ LF
Sbjct: 159 DNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLF 218
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++ ER+LVTW V +I GY+ ++NE+L LF +M E P ++ ++ V
Sbjct: 219 DKMQERDLVTWTV----------MIGGYAECGKANESLVLFEKMRE-EGVVPDKVAMVTV 267
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A K G + ++I Y +++ F D+ + +ID YAKCGC+ SA ++F+ ++
Sbjct: 268 VFACAKLGAMHKARIIDDYIQRKKFQ-LDVILGTAMIDMYAKCGCVESAREIFD--RMEE 324
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKF 251
KN++SW+ +I+ + HG G++A++ F M G+ P++ + EEGL+F
Sbjct: 325 KNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRF 384
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
F M E+ V D+KHY C++D+L RAGRL++A
Sbjct: 385 FSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEA 417
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 153/273 (56%), Gaps = 25/273 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++T F+IR C L +G +H + K G +V AL DMY ++D+ LF
Sbjct: 835 DNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLF 894
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++ ER+LVTW V +I GY+ +NE+L LF +M E P ++ ++ V
Sbjct: 895 DKMXERDLVTWTV----------MIGGYAECGNANESLVLFDKMRE-EGVVPDKVAMVTV 943
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A K G + + I Y +++ F D+ + +ID +AKCGC+ SA ++F+ ++
Sbjct: 944 VFACAKLGAMHKARTIDDYIQRKKFQ-LDVILGTAMIDMHAKCGCVESAREIFD--RMEE 1000
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN++SW+ +I+ + HG G++A++ F M + G+ PN+ + EEGL+F
Sbjct: 1001 KNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRF 1060
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
F M E+ V D+KHY C++D+L RAGRL++A
Sbjct: 1061 FSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEA 1093
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 117/267 (43%), Gaps = 26/267 (9%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
Q+HA S G ++ V L Y L D+ LFD + R+ V+W+V++ G K
Sbjct: 80 QVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVG 139
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
I+ + FR + C P T+ V+ A ++ +LIH K
Sbjct: 140 DYINCF----------GTFRELIRCG-ARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYK 188
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
G + D V L+D Y KC I A LF+ + ++LV+WT +I G+A G E+
Sbjct: 189 FGLD-LDHFVCAALVDMYVKCREIEDARFLFD--KMQERDLVTWTVMIGGYAECGKANES 245
Query: 225 VENFERMQKVGLKPNRSWRI----------GEEGLKFFDKMVEECEVLPDIKHYGCLIDI 274
+ FE+M++ G+ P++ + + D ++ + D+ +ID+
Sbjct: 246 LVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDM 305
Query: 275 LERAGRLEQAEEVASGIPSQITNVVVW 301
+ G +E A E+ + + NV+ W
Sbjct: 306 YAKCGCVESAREIFDRMEEK--NVISW 330
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 117/267 (43%), Gaps = 26/267 (9%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
Q+H S G ++ V L Y L D+ LFD + R+ V+W+V++ G K
Sbjct: 756 QVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAK-- 813
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
+ Y MN FR + C P T+ V+ A ++ +LIH K
Sbjct: 814 --VGDY--MN----CFGTFRELIRCG-ARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYK 864
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
G + D V L+D Y KC I A LF+ + ++LV+WT +I G+A G E+
Sbjct: 865 FGLD-LDHFVCAALVDMYGKCREIEDARFLFD--KMXERDLVTWTVMIGGYAECGNANES 921
Query: 225 VENFERMQKVGLKPNRSWRI----------GEEGLKFFDKMVEECEVLPDIKHYGCLIDI 274
+ F++M++ G+ P++ + + D ++ + D+ +ID+
Sbjct: 922 LVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDM 981
Query: 275 LERAGRLEQAEEVASGIPSQITNVVVW 301
+ G +E A E+ + + NV+ W
Sbjct: 982 HAKCGCVESAREIFDRMEEK--NVISW 1006
>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
Length = 514
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 104/311 (33%), Positives = 164/311 (52%), Gaps = 37/311 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT S +++ C +++ G Q H K+GF+S V V TAL MY G L+D+ +F
Sbjct: 9 NQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVF 68
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
D++ ER+ TWN +ITG +V WT +I GY++ +E+L
Sbjct: 69 DKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLN 128
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
+F +M + + +VL A + + H Y + GF A DI V + L+D
Sbjct: 129 VFNQMRKTG-MKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGF-ALDIVVGSALVDM 186
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAK G + A ++F+ + ++N VSW +II+G A HG G +AV FE+M + G+KPN
Sbjct: 187 YAKSGSMEDACQVFD--KMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEI 244
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+G EG +F+ M + ++PD+ HY C+ID+L RAG L++AE +G
Sbjct: 245 SFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFING 304
Query: 291 IPSQITNVVVW 301
+P + +V VW
Sbjct: 305 MPVE-PDVSVW 314
>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
Length = 601
Score = 173 bits (439), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 164/294 (55%), Gaps = 26/294 (8%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D +T+ L++ CV G QLH + K+G + YV L +MY + + +
Sbjct: 124 LPDDYTFPSLLKACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQR 183
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FDE+ E +V++N IIT GY+R +R NEAL+LFR++ A +P+++T+L
Sbjct: 184 VFDEILEPCVVSYNAIIT----------GYARSSRPNEALSLFRQLQA-RKLKPNDVTVL 232
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+VL + G + + IH Y +K G + + + V+ LID YAKCG + A +FE SV
Sbjct: 233 SVLSSCALLGALDLGKWIHEYVKKNGLDKY-VKVNTALIDMYAKCGSLDGAISVFESMSV 291
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
++ +W+ +I +AMHG G++ + FE M + ++P+ +G +EG
Sbjct: 292 --RDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGF 349
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++F M E ++P IKHYGC++D+L RAG L +A + +P + T ++WRT
Sbjct: 350 RYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTP-ILWRT 402
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 80/163 (49%), Gaps = 16/163 (9%)
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT-EPSE 136
+ +LF+ +P+ ++V +N + GYSR N +A++LF + A Y P +
Sbjct: 80 AHQLFEAIPQPDIVLFN----------SMFRGYSRSNAPLKAISLF--IKALNYNLLPDD 127
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
T ++L A + + +H K G N + +V LI+ YA C + A ++F+
Sbjct: 128 YTFPSLLKACVVAKAFQQGKQLHCLAIKLGLNE-NPYVCPTLINMYAGCNDVDGAQRVFD 186
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+ + +VS+ II+G+A EA+ F ++Q LKPN
Sbjct: 187 E--ILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPN 227
>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
Length = 480
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 162/286 (56%), Gaps = 33/286 (11%)
Query: 47 HAVFSKVGFQSHVYVNTALGDMYVS--LGFLKDSSKLFDELPERNLVTWNVIITG----- 99
H K G SH YV + Y +G L + KLFDE+P ++ VT + +IT
Sbjct: 1 HCQAVKPGIFSHGYVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAYFESA 60
Query: 100 -----------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148
+V W +I+G++ + NEAL L++RM + E EP T++++L A +
Sbjct: 61 YKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRMGS-EGVEPDGFTMVSLLSACAE 119
Query: 149 NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSW 208
+ + H Y K G N ++H +N L+D YAKCG I A K+F++ ++R N+VSW
Sbjct: 120 LATLVLGRRAHVYMVKVGLNK-NLHANNALLDLYAKCGTISEARKIFDEMGIER-NVVSW 177
Query: 209 TTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVE 257
T++I G A++G GKEA+E+F+ M++ GL P+ +G EG ++F +M E
Sbjct: 178 TSLIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKE 237
Query: 258 ECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ +++P I+HYGC++D+L RAG L++A + +P Q N V+WRT
Sbjct: 238 QYDIVPRIEHYGCMVDLLGRAGLLKEAYDYIQDMPLQ-PNAVIWRT 282
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 109/227 (48%), Gaps = 29/227 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT L+ C L+ LG + H KVG +++ N AL D+Y G + ++ K+F
Sbjct: 106 DGFTMVSLLSACAELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIF 165
Query: 83 DELP-ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
DE+ ERN+V+W +I GL ++G+ + EAL F+ M E PSEIT +
Sbjct: 166 DEMGIERNVVSWTSLIVGLA-----VNGFGK-----EALEHFKDMER-EGLVPSEITFVG 214
Query: 142 VLPAIWKNGEVRNCQLIHGYGE--KRGFNAFD----IHVSNCLIDTYAKCGCIFSASKLF 195
VL A +C +++ E KR +D I C++D + G + A
Sbjct: 215 VLYA------CSHCGIVNEGFEYFKRMKEQYDIVPRIEHYGCMVDLLGRAGLLKEAYDYI 268
Query: 196 EDTSVDRKNLVSWTTIISGFAMHG-MGKEAVENFERMQKVGLKPNRS 241
+D + + N V W T++ +HG +G A F R + + L+P S
Sbjct: 269 QDMPL-QPNAVIWRTLLGACTIHGHLGLGA---FARARLLQLEPKDS 311
>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g49142-like [Vitis vinifera]
Length = 689
Score = 173 bits (438), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 99/307 (32%), Positives = 160/307 (52%), Gaps = 34/307 (11%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D+FT F++++C LS +G +H +VG + YV +L DMYV G + D+ K
Sbjct: 178 LGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARK 237
Query: 81 LFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEA 119
LFD++ R++ +WN +I G +V WT +I GY++ + +A
Sbjct: 238 LFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQA 297
Query: 120 LALFRRM-AACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
L LF M +P+ +TI++VLPA ++ + + IH + G + + V L
Sbjct: 298 LGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLH-LNSSVQTAL 356
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
YAKC + A F+ + + KNL++W T+I+ +A HG G EAV FE M + G++P
Sbjct: 357 AGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQP 416
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ +G + GL F+ M V P ++HY C++D+L RAGRL +A+E+
Sbjct: 417 DAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKEL 476
Query: 288 ASGIPSQ 294
S +P Q
Sbjct: 477 ISQMPMQ 483
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 129/308 (41%), Gaps = 45/308 (14%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
I H P P + + FL R ++ LG Q HA G Q + ++ + MY S
Sbjct: 70 ILQHFPHPSSYAPI-FQFLTRH----NFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYAS 124
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITGLVKW------TGIIDGYSRMNRSNEALALFRR 125
G L + +FD + + + +N II + ++ Y+RM+ F
Sbjct: 125 SGDLDSAVVVFDRIDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMH--------FLG 176
Query: 126 MAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC 185
+ +T P + A L + + +HG G + G D +V LID Y KC
Sbjct: 177 LLGDNFTLPFVLKSCADLSRVCMG------RCVHGQGLRVGLEG-DFYVGASLIDMYVKC 229
Query: 186 GCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWR-- 243
G I A KLF+ V +++ SW +I+G+ G A + FERM+ + SW
Sbjct: 230 GVIGDARKLFDKMIV--RDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIV---SWTAM 284
Query: 244 --------IGEEGLKFFDKMVEE-CEVLPDIKHYGCLIDILERAGRLEQAEEV---ASGI 291
E+ L FD+M+++ E+ P+ ++ ++ LE+ + A+GI
Sbjct: 285 ISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGI 344
Query: 292 PSQITNVV 299
+ + V
Sbjct: 345 GLHLNSSV 352
>gi|357133503|ref|XP_003568364.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Brachypodium distachyon]
Length = 554
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 98/303 (32%), Positives = 166/303 (54%), Gaps = 37/303 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FTY FL++ C L +LG Q+H + G +S+ V +L +MY G L + K+F
Sbjct: 117 DRFTYPFLLKACGGLMALDLGKQVHGHVVRSGCESNAIVQNSLIEMYTRAGDLVLARKVF 176
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
D + ER++V+WN +I+ +V WT ++ GY+ + A+
Sbjct: 177 DGMQERDVVSWNTVISAHARLGQMRKARAVFNSMPDKTVVSWTALVSGYTAAGDFSGAVE 236
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
FR M E EP +++I+AVLPA + G + + I+ Y + + +V N L++
Sbjct: 237 AFRLMQM-EGFEPDDVSIVAVLPACAQLGALELGRWIYAYCNRHQM-LRETYVCNALVEM 294
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-LKPNR 240
YAKCGCI A +LF + K+++SW+T++ G A HG +EAV+ F M++ G +KPN
Sbjct: 295 YAKCGCIDQALQLFNGMA--EKDVISWSTMVGGLAAHGRAQEAVQLFTEMERQGTVKPNG 352
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
+G +EGL +FD+M + + P ++HYGC++D+L R+G++++ ++ S
Sbjct: 353 ITFVGLLSACSHAGLLDEGLDYFDRMNDVYGIEPGVEHYGCIVDLLCRSGQIQRTLDLIS 412
Query: 290 GIP 292
+P
Sbjct: 413 DMP 415
>gi|224059226|ref|XP_002299777.1| predicted protein [Populus trichocarpa]
gi|222847035|gb|EEE84582.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 111/310 (35%), Positives = 160/310 (51%), Gaps = 39/310 (12%)
Query: 26 TYSFLIRTCVTLSYP--NLGTQLHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSSKLF 82
T+ L+ C L +LG LHA K+G + ++ V TAL DMY G ++ S F
Sbjct: 12 TFITLLSGCADLPSQGNSLGPLLHAYTRKLGLDTCNLMVGTALVDMYAKCGHVELSRLCF 71
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
DEL +N +WN +I G V+ WT +I+G+ +M EAL
Sbjct: 72 DELKVKNSFSWNTMIDGFVRNGKIREAIEVFDEMPERGVISWTVLINGFVKMGLFEEALE 131
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
FR+M + EP +TI+ VL A G + +H Y K+G ++ + N LID
Sbjct: 132 WFRKMQVSK-VEPDRVTIVTVLSACANLGALGLGLWVHRYALKKGLRD-NVKICNSLIDL 189
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
Y++CG I A ++FE + + LVSW +II G A +G +EA+E+F+ MQK G KPN
Sbjct: 190 YSRCGAIELARQVFE--KMGERTLVSWNSIIGGLAANGFTEEALEHFDLMQKQGFKPNDV 247
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
G +EGLK+FD M ++ P I+HYGC++D+ RAGRLE A V
Sbjct: 248 SFTGALTACSHTGLVDEGLKYFDIMERVHKISPRIEHYGCIVDLYSRAGRLEDAMSVVQN 307
Query: 291 IPSQITNVVV 300
+P + VVV
Sbjct: 308 MPMKPNEVVV 317
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 11/184 (5%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ C L LG +H K G + +V + +L D+Y G ++ + ++F
Sbjct: 144 DRVTIVTVLSACANLGALGLGLWVHRYALKKGLRDNVKICNSLIDLYSRCGAIELARQVF 203
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+++ ER LV+WN II GL +G++ EAL F M + +P++++
Sbjct: 204 EKMGERTLVSWNSIIGGLAA-----NGFTE-----EALEHFDLMQKQGF-KPNDVSFTGA 252
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G V E+ + I C++D Y++ G + A + ++ +
Sbjct: 253 LTACSHTGLVDEGLKYFDIMERVHKISPRIEHYGCIVDLYSRAGRLEDAMSVVQNMPMKP 312
Query: 203 KNLV 206
+V
Sbjct: 313 NEVV 316
>gi|449494077|ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g34160-like [Cucumis sativus]
Length = 576
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 163/293 (55%), Gaps = 26/293 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D+ T SF ++ C + QLH+ + GF + V + T L D Y +G L + KL
Sbjct: 101 IDALTCSFALKACARALARSEAIQLHSQLLRFGFNADVLLQTTLLDAYAKIGDLDLAQKL 160
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FDE+P+ ++ +WN +I G+++ +R +A+ F+RM P+ +T+
Sbjct: 161 FDEMPQPDIASWNALIA----------GFAQGSRPADAIMTFKRMKVDGNLRPNAVTVQG 210
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A + G ++ + +H Y + ++ ++ V N +ID YAKCG + A +FE+ D
Sbjct: 211 ALLACSQLGALKEGESVHKYIVEEKLDS-NVQVCNVVIDMYAKCGSMDKAYWVFENMRCD 269
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
K+L++W T+I FAMHG G +A++ FE++ + G+ P+ + E+GLK
Sbjct: 270 -KSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVSYLAVLCACNHAGLVEDGLK 328
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ M + + P+IKHYG ++D+L RAGRL++A ++ S +P N+V+W+T
Sbjct: 329 LFNSMTQR-GLEPNIKHYGSMVDLLGRAGRLKEAYDIVSSLP--FPNMVLWQT 378
>gi|357514477|ref|XP_003627527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355521549|gb|AET02003.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/371 (30%), Positives = 174/371 (46%), Gaps = 84/371 (22%)
Query: 9 QIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDM 68
Q+Y+H HSP + +T++FL TC +LS +LG +H F K GF+ V+ +TAL DM
Sbjct: 69 QMYLHGHSP-----NQYTFNFLFTTCTSLSSLSLGQMIHTQFMKSGFKHDVFASTALLDM 123
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTGII 107
Y LG LK + +FDE+ + L TWN ++ G +V WT ++
Sbjct: 124 YAKLGCLKFARNVFDEMSVKELATWNAMMAGCTRFGDMERALELFWLMPSRNVVSWTTMV 183
Query: 108 DGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF 167
GY + + +AL LF RM + P+E+T+ +VLPA G + Q + Y K GF
Sbjct: 184 SGYLQNKQYEKALGLFMRMEREKDVSPNEVTLASVLPACANLGALEIGQRVEVYARKNGF 243
Query: 168 NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGM------- 220
++ V N +++ YAKCG I A K+F++ R NL SW ++I G A+HG
Sbjct: 244 FK-NLFVCNAVLEMYAKCGKIDVAWKVFDEIGRFR-NLCSWNSMIMGLAVHGQCHKAIQL 301
Query: 221 ------------------------GKEAVENFERMQ-------------KVGLKPNRSWR 243
G V + R + + G P+
Sbjct: 302 YDQMLVSYSLYLLFISFAFIMIRGGHGLVNHINRTEPNLSVEMVRNNRTREGTLPDDVTF 361
Query: 244 IG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+G E+G F M + ++P ++HYGC++D+L RAGRL +A EV +P
Sbjct: 362 VGLLLACTHGGMVEKGKHVFQSMTRDFNIIPKLEHYGCMVDLLGRAGRLTEAYEVIKRMP 421
Query: 293 SQITNVVVWRT 303
+ + V+W T
Sbjct: 422 MK-PDSVIWGT 431
>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/307 (32%), Positives = 160/307 (52%), Gaps = 34/307 (11%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D+FT F++++C LS +G +H +VG + YV +L DMYV G + D+ K
Sbjct: 104 LGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARK 163
Query: 81 LFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEA 119
LFD++ R++ +WN +I G +V WT +I GY++ + +A
Sbjct: 164 LFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQA 223
Query: 120 LALFRRM-AACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
L LF M +P+ +TI++VLPA ++ + + IH + G + + V L
Sbjct: 224 LGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLH-LNSSVQTAL 282
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
YAKC + A F+ + + KNL++W T+I+ +A HG G EAV FE M + G++P
Sbjct: 283 AGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQP 342
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ +G + GL F+ M V P ++HY C++D+L RAGRL +A+E+
Sbjct: 343 DAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKEL 402
Query: 288 ASGIPSQ 294
S +P Q
Sbjct: 403 ISQMPMQ 409
>gi|225457315|ref|XP_002281558.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
[Vitis vinifera]
gi|297733922|emb|CBI15169.3| unnamed protein product [Vitis vinifera]
Length = 615
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 102/310 (32%), Positives = 171/310 (55%), Gaps = 27/310 (8%)
Query: 5 KQLQQIYIHSHSPLPPLF-DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNT 63
K L ++I++ +F DS T+ ++++ L LG +H ++GF+S+VYV+T
Sbjct: 122 KHLHSVFIYTQMWKNGIFPDSSTFPTVLKSVAQLCRQELGKAIHCCIIQMGFESNVYVST 181
Query: 64 ALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALF 123
AL +MY + + D+ ++FDE+P+RN+V+WN +ITG ++RM R + + +F
Sbjct: 182 ALVNMYGTCSSVSDARQVFDEIPDRNIVSWNALITGY--------NHNRMFR--KVIDVF 231
Query: 124 RRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183
R M +P E+T++ VL A G + + I Y + ++ V LID YA
Sbjct: 232 REMQIAG-AKPVEVTMVGVLLACAHLGALNQGRWIDDYIDHNRLR-LNVFVGTALIDMYA 289
Query: 184 KCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWR 243
KCG + A K+F+ V KN+ +W +ISG+AM+G G+ A++ F RM KP+
Sbjct: 290 KCGVVDEAEKIFKAMRV--KNVYTWNVLISGYAMNGRGESALQAFSRMIMEKFKPDEVTF 347
Query: 244 IG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+G EG +F M EE + P I+HYGC++D+L RAG L++A+++ +
Sbjct: 348 LGVLCACCHQGLVNEGRTYFTSMKEEFGLRPRIEHYGCMVDLLGRAGFLDEAQQLIQAMS 407
Query: 293 SQITNVVVWR 302
Q + ++WR
Sbjct: 408 MQ-PDPIIWR 416
>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Cucumis sativus]
Length = 645
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 109/323 (33%), Positives = 174/323 (53%), Gaps = 43/323 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++FT+S ++++C S G LH K+G S +YV T L D+Y G + + +LF
Sbjct: 144 NAFTFSSVLKSCSLES----GKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLF 199
Query: 83 DELPERNLVTWNVIIT---------------------GLVKWTGIIDGYSRMNRSNEALA 121
D++PER+LV+ ++T +V W +I GY++ NE+L
Sbjct: 200 DKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLK 259
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LFRRM + P+E+T+LAVL A + G + + + IH Y E +G ++HV LID
Sbjct: 260 LFRRMLVAKAI-PNEVTVLAVLSACGQLGALESGRWIHSYIENKGIQ-INVHVGTALIDM 317
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
Y+KCG + A +F+ + K++V+W ++I G+AMHG + A++ FE M + G KP
Sbjct: 318 YSKCGSLEDARLVFD--RIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDI 375
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
IG EEG FF M ++ + P I+HYGC++++L RAG LE+A +
Sbjct: 376 TFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKN 435
Query: 291 IPSQITNVVVWRT--GFLRLLIN 311
+ + + V+W T G RL +N
Sbjct: 436 M-TIAADPVLWGTLLGCCRLHVN 457
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 135/322 (41%), Gaps = 64/322 (19%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
Q+HA + G + +N L Y +LG L S +F+ E N+ +++ II V+
Sbjct: 65 QIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQ-- 122
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI-WKNGEVRNCQLIHGYGE 163
SR+ + A + +M +C EP+ T +VL + ++G+V +CQ I
Sbjct: 123 ------SRL--FDRAFGYYSQMLSCG-VEPNAFTFSSVLKSCSLESGKVLHCQAI----- 168
Query: 164 KRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT------------------------- 198
K G + D++V L+D YA+ G + A +LF+
Sbjct: 169 KLGLGS-DLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKAR 227
Query: 199 ----SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---------SWRIG 245
+ +++V W +I G+A G+ E+++ F RM PN ++G
Sbjct: 228 SLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLG 287
Query: 246 E-EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTG 304
E ++ +E + ++ LID+ + G LE A V I + +VV W +
Sbjct: 288 ALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDK--DVVAWNS- 344
Query: 305 FLRLLINSYFFSPITLNSQRLF 326
+I Y + ++ +LF
Sbjct: 345 ----MIVGYAMHGFSQHALQLF 362
>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Vitis vinifera]
Length = 647
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 104/304 (34%), Positives = 161/304 (52%), Gaps = 39/304 (12%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVSLGFLKDSSKLF 82
SFT++ L++ C NLG Q+H +G F S +YV L DMYV G L ++F
Sbjct: 139 SFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVF 198
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
DE+ +R++++W +I +V WT ++ GY++ R EAL
Sbjct: 199 DEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALE 258
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN-AFDIHVSNCLID 180
+F RM A + E+T++ V+ A + G + + E+ GF ++ V + LID
Sbjct: 259 VFERMQAAG-VKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALID 317
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
YAKCG + A K+FE ++ +N+ S++++I GFAMHG+ A+E F+ M K +KPNR
Sbjct: 318 MYAKCGSVEDAYKVFE--RMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNR 375
Query: 241 SWRIG-----------EEGLKFFDKMVEECE-VLPDIKHYGCLIDILERAGRLEQAEEVA 288
IG E+G + F M+EEC V P HY C++D+L RAGRLE+A +
Sbjct: 376 VTFIGVLTACSHAGMVEQGQQLF-AMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLV 434
Query: 289 SGIP 292
+P
Sbjct: 435 KMMP 438
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 69/282 (24%), Positives = 112/282 (39%), Gaps = 49/282 (17%)
Query: 28 SFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE 87
S L+ ++ N Q+HA + G + +V L L D P
Sbjct: 40 SRLVSVLHGCTHINQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMD--------PY 91
Query: 88 RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIW 147
LV V WT +I GY+ E++ L+ M + P T A+L A
Sbjct: 92 PRLVFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRR-QGIGPVSFTFTALLKACS 150
Query: 148 KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR----- 202
+V + +H G D++V N LID Y KCGC+ ++F D +DR
Sbjct: 151 AALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVF-DEMLDRDVISW 209
Query: 203 -------------------------KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
K++V+WT +++G+A + +EA+E FERMQ G+K
Sbjct: 210 TSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVK 269
Query: 238 PNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
+ +G ++ C L K+ + D+ E++G
Sbjct: 270 TDEVTLVG---------VISACAQLGAAKYANWVRDVAEQSG 302
>gi|357127896|ref|XP_003565613.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 500
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 158/293 (53%), Gaps = 36/293 (12%)
Query: 41 NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGL 100
LG QLH+V + G S +V+ +L Y S G + + +FD+ ++++ WNV+I+G
Sbjct: 86 TLGPQLHSVIVRAGLASDAHVSASLIQTYFSCGRVASARSVFDQTTDKDIFCWNVMISGY 145
Query: 101 VK---------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
VK WT +I Y++M + EA+ +FRRM E EP + +
Sbjct: 146 VKSGNLACARELFDVMPARNVVSWTTVIGAYAQMKQPVEAVEVFRRMQVEEGIEPDGVAL 205
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
L+VL A G V + +H + +RG + I + N +ID Y K GC+ A ++FE
Sbjct: 206 LSVLSACGDLGAVDLGEWVHRFVVRRGL-CWQIPLMNAIIDMYVKLGCVRKAVEVFE--G 262
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEG 248
+D+K++V+WTT+I+GFA+HG+G EA+E F RM+ + PN + + G
Sbjct: 263 MDQKSVVTWTTVIAGFALHGLGLEAIEMFRRMEMENVAPNDVTFLAILSACSHVGLTDLG 322
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+F MV + + ++HYGC++D+L RAG L +A+++ +P + N +W
Sbjct: 323 RWYFKIMVSQYRIKQRVEHYGCMVDLLGRAGYLMEAQDLVQDMPFK-ANAAIW 374
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 100/236 (42%), Gaps = 48/236 (20%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D ++ C L +LG +H + G + + A+ DMYV LG ++ + ++F
Sbjct: 201 DGVALLSVLSACGDLGAVDLGEWVHRFVVRRGLCWQIPLMNAIIDMYVKLGCVRKAVEVF 260
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + ++++VTW +I G++ EA+ +FRRM E P+++T LA+
Sbjct: 261 EGMDQKSVVTWTTVIA----------GFALHGLGLEAIEMFRRMEM-ENVAPNDVTFLAI 309
Query: 143 LPAIWKNG--------------EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
L A G + R Q + YG C++D + G +
Sbjct: 310 LSACSHVGLTDLGRWYFKIMVSQYRIKQRVEHYG--------------CMVDLLGRAGYL 355
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKPNRS 241
A L +D + N W +++ HG +GK+A+ + + L+P+ S
Sbjct: 356 MEAQDLVQDMPF-KANAAIWGALLAAARTHGDAELGKQAL-----LHLIELEPHNS 405
>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 596
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 105/307 (34%), Positives = 166/307 (54%), Gaps = 29/307 (9%)
Query: 10 IYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY 69
+ +H PP D+ TY L++ C L G LHA +K G + V+V +L Y
Sbjct: 108 LALHRRRLAPP--DTHTYPPLLQACTRLLALREGESLHAEAAKNGLVALVFVKNSLVHHY 165
Query: 70 VSLGFLKDSSKLFDELP--ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA 127
+ G + + ++FDE+P ERNLV+WN +++G++ R NE L +FR
Sbjct: 166 GACGLFESAHRVFDEIPVLERNLVSWN----------SVMNGFAANGRPNEVLTIFRETL 215
Query: 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC 187
+ P TI++VL A + G + + +H + K G + HV N LID YAKCG
Sbjct: 216 EADLM-PDGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVG-NSHVGNALIDLYAKCGG 273
Query: 188 IFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-- 245
+ A K+FE+ V R +VSWT++I G A +G GK+A+E F M++ L P +G
Sbjct: 274 VEDAWKVFEEMGVAR-TVVSWTSLIVGLAGNGFGKDALELFGLMERERLIPTDITMVGVL 332
Query: 246 ---------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQIT 296
++G ++F++M ++ + P I+H GC++D+L RAGR+E+A + +P +
Sbjct: 333 YACSHCGLVDDGFRYFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVE-P 391
Query: 297 NVVVWRT 303
N VVWRT
Sbjct: 392 NAVVWRT 398
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 92/202 (45%), Gaps = 23/202 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT ++ C + LG ++H SKVG + +V AL D+Y G ++D+ K+F
Sbjct: 222 DGFTIVSVLTACAEIGALTLGRRVHVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVF 281
Query: 83 DELP-ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
+E+ R +V+W +I GL +G+ + +AL LF M E P++IT++
Sbjct: 282 EEMGVARTVVSWTSLIVGLAG-----NGFGK-----DALELFGLMER-ERLIPTDITMVG 330
Query: 142 VLPAIWKNGEVRNC-----QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
VL A G V + ++ YG G C++D + G + A
Sbjct: 331 VLYACSHCGLVDDGFRYFNEMQDKYGIAPGIEHL-----GCMVDLLGRAGRVEEAHNYIT 385
Query: 197 DTSVDRKNLVSWTTIISGFAMH 218
V+ N V W T++ AMH
Sbjct: 386 TMPVE-PNAVVWRTLLGACAMH 406
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
ALAL RR A P T +L A + +R + +H K G A + V N L
Sbjct: 107 ALALHRRRLA----PPDTHTYPPLLQACTRLLALREGESLHAEAAKNGLVAL-VFVKNSL 161
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
+ Y CG SA ++F++ V +NLVSW ++++GFA +G E + F + L P
Sbjct: 162 VHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGFAANGRPNEVLTIFRETLEADLMP 221
Query: 239 N 239
+
Sbjct: 222 D 222
>gi|255564780|ref|XP_002523384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537334|gb|EEF38963.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 538
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 106/313 (33%), Positives = 167/313 (53%), Gaps = 40/313 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DS+++ F ++ + LS G Q H+ + G SH++V +L MY S + D+ KLF
Sbjct: 109 DSYSFPFALKAVIRLSATKTGLQFHSQAIRFGLHSHLHVLVSLIRMYSS-SHISDARKLF 167
Query: 83 DELP--ERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEA 119
D +P RN+ WN ++T L+ WT +I GY+ +NR ++A
Sbjct: 168 DGIPLTARNVALWNAMLTSYAKICDMPNAQHLFDSMPQRNLISWTALISGYAHINRPHQA 227
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
+A+FR M + P EIT+LAVL A + G + + I Y + G + ++ + N LI
Sbjct: 228 IAIFRTMQ-LQNVVPDEITLLAVLSACAQLGALELGEWIRNYIDIHGLHR-NVPLHNALI 285
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D YAK G I A +FE S+ K +V+WTT+I+G A+HG+G +A+E F RM++ +KPN
Sbjct: 286 DMYAKSGNIKRALLIFE--SMKHKTIVTWTTMIAGLALHGLGTQALEMFSRMERDRVKPN 343
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
I + FF M + P I+HYGC+ID+L RAG L++A+++
Sbjct: 344 EITFIAVLSACSHVGLVQLARSFFTNMRSRYTIQPKIEHYGCMIDLLGRAGYLQEAQQLL 403
Query: 289 SGIPSQITNVVVW 301
+P + N +W
Sbjct: 404 QQMPFE-PNAAIW 415
>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Vitis vinifera]
Length = 611
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 103/307 (33%), Positives = 172/307 (56%), Gaps = 30/307 (9%)
Query: 9 QIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDM 68
++++ H + P + FT++ +++ C T+ NLG Q+H K+G S V+V+ AL D+
Sbjct: 125 ELFVRLHREVLP--NQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDV 182
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y G +++S +LF E P RN VTWN +I G V+ + +AL LF M
Sbjct: 183 YAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQ----------LGDGEKALRLFLNML- 231
Query: 129 CEY-TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC 187
EY + +E+T + L A + IH K F+ DI V+N LID YAKCG
Sbjct: 232 -EYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTTFDK-DIVVTNALIDMYAKCGS 289
Query: 188 IFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-- 245
I A +F+ +++++ VSW +ISG++MHG+G+EA+ F++MQ+ +KP++ +G
Sbjct: 290 IKDARLVFD--LMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVL 347
Query: 246 ---------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQIT 296
++G +F M+++ + P I+HY C++ +L R G L++A ++ IP Q
Sbjct: 348 SACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQ-P 406
Query: 297 NVVVWRT 303
+V+VWR
Sbjct: 407 SVMVWRA 413
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 91/319 (28%), Positives = 145/319 (45%), Gaps = 34/319 (10%)
Query: 19 PPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
P F+S Y+ ++ C+ P+ G LH K G ++ L +MYV FL D+
Sbjct: 33 PSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDA 92
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
SKLFDE+PERN ++ + +I GY+ R EA+ LF R+ P++ T
Sbjct: 93 SKLFDEMPERNTIS----------FVTLIQGYAESVRFLEAIELFVRLH--REVLPNQFT 140
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+VL A + IH + K G ++ D+ VSN L+D YAKCG + ++ +LF ++
Sbjct: 141 FASVLQACATMEGLNLGNQIHCHVIKIGLHS-DVFVSNALMDVYAKCGRMENSMELFAES 199
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV-----------GLKPNRSWRIGEE 247
+N V+W T+I G G G++A+ F M + L+ S E
Sbjct: 200 P--HRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEP 257
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLR 307
GL+ V+ DI LID+ + G ++ A V + Q + V W
Sbjct: 258 GLQIHSLTVKT-TFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQ--DEVSWNA---- 310
Query: 308 LLINSYFFSPITLNSQRLF 326
+I+ Y + + R+F
Sbjct: 311 -MISGYSMHGLGREALRIF 328
>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Glycine max]
Length = 640
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 106/344 (30%), Positives = 167/344 (48%), Gaps = 67/344 (19%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DSFT++F ++ + G QLH+ + GF +H++V T L MY G + ++F
Sbjct: 102 DSFTFAFALKAVANSRHLRPGIQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVF 161
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRS----- 116
DE+ E N+VTWN ++T L W G++ GY++
Sbjct: 162 DEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCMPVRNLTSWNGMLAGYAKAGELGLARR 221
Query: 117 --------------------------NEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
+EA FR + E +E+++ VL A + G
Sbjct: 222 VFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLR-EEIRTNEVSLTGVLSACAQAG 280
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
+++HG+ EK GF + V+N LIDTY+KCG + A +F++ V R ++VSWT+
Sbjct: 281 AFEFGKILHGFVEKAGF-LYVGSVNNALIDTYSKCGNVAMARLVFQNMPVAR-SIVSWTS 338
Query: 211 IISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEEC 259
II+G AMHG G+EA++ F M++ G++P+ I EEG F KM
Sbjct: 339 IIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGLVEEGCGLFSKMKNLY 398
Query: 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ P I+HYGC++D+ RA RL++A E +P N ++WRT
Sbjct: 399 GIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVS-PNAIIWRT 441
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 73/191 (38%), Gaps = 13/191 (6%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
++ C G LH K GF VN AL D Y G + + +F +P
Sbjct: 272 VLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMP--- 328
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
+ +V WT II G + EA+ LF M P IT +++L A +
Sbjct: 329 ------VARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEE-SGVRPDGITFISLLYACSHS 381
Query: 150 GEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSW 208
G V C L G H C++D Y + + A + + V N + W
Sbjct: 382 GLVEEGCGLFSKMKNLYGIEPAIEHY-GCMVDLYGRAARLQKAYEFICEMPVS-PNAIIW 439
Query: 209 TTIISGFAMHG 219
T++ ++HG
Sbjct: 440 RTLLGACSIHG 450
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 68/175 (38%), Gaps = 21/175 (12%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGF-----LKDSSKLFDELPERNLVTWNVIITG 99
Q+HA K G + V G + + L + +LF P + N +I
Sbjct: 20 QIHAQICKTGLHTDPLV---FGKLLLHCAITISDALHYALRLFHHFPNPDTFMHNTLIRS 76
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
L S +L F ++ P T L A+ + +R +H
Sbjct: 77 L----------SLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLH 126
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISG 214
+ GF+A I V LI YA+CG SA ++F++ S N+V+W +++
Sbjct: 127 SQAFRHGFDA-HIFVGTTLISMYAECGDSGSARRVFDEMS--EPNVVTWNAVLTA 178
>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 163/301 (54%), Gaps = 36/301 (11%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL----GFLK 76
L + FTY F+++ C + NLG +H K GF V V L MY G ++
Sbjct: 7 LPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIE 66
Query: 77 DSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM---AACEYTE 133
+ K+FDE+ + + V+W + +I GY R+ RS++A+ LFR M C
Sbjct: 67 FARKVFDEMYKSDSVSW----------SAMIGGYVRVGRSSDAINLFREMQIKGVC---- 112
Query: 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASK 193
P EIT+++VL A G + + + Y EK ++ +SN LID +AKCG + A+
Sbjct: 113 PDEITMVSVLSACTGLGALELGKWVESYVEKERVQK-NVELSNALIDMFAKCGDVDKATN 171
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-------- 245
LF S+ +N+VSWT++I G AMHG G EAV FE M + G+ P+ IG
Sbjct: 172 LFR--SMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHS 229
Query: 246 ---EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
++G ++FD M ++ ++P I+HYGC++D+L RAG +++A + +P N VVWR
Sbjct: 230 GLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPID-PNPVVWR 288
Query: 303 T 303
T
Sbjct: 289 T 289
>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
Length = 825
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 111/345 (32%), Positives = 177/345 (51%), Gaps = 35/345 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F+ S +++ C +++ +LG Q+H + K+G++S ++V AL D+Y +++S ++F
Sbjct: 351 NEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIF 410
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
L + N V+WN II GY + + +AL++F+ M A + +++T +V
Sbjct: 411 RSLRDANEVSWNTIIV----------GYCQSGFAEDALSVFQEMRA-AHVLSTQVTFSSV 459
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A +++ IH EK FN D V N LIDTYAKCGCI A K+FE S+ +
Sbjct: 460 LRACANTASIKHTVQIHSLIEKSTFNN-DTIVCNSLIDTYAKCGCIRDALKVFE--SIIQ 516
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKF 251
++VSW IISG+A+HG +A+E F RM K KPN S + +GL
Sbjct: 517 CDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSL 576
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLIN 311
F+ M + + P + HY C++ +L RAGRL A + IPS + +VWR +++
Sbjct: 577 FNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIGDIPST-PSPMVWRALLSSCVVH 635
Query: 312 SYF----FSP-----ITLNSQRLFFFPAALYALTQILGFKPLFRK 347
FS I + + + +YA IL L RK
Sbjct: 636 KNVALGKFSAEKVLEIEPQDETTYVLLSNMYAAAGILDQVALLRK 680
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 137/298 (45%), Gaps = 36/298 (12%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG--FQSHVYVNTALGDMYVSLGFLKD 77
P DS+ + L++ C+ G +HA + G Q + L ++Y LG L
Sbjct: 43 PKLDSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAA 102
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA--ACEYTEPS 135
+ +LFD +PERN+V+ + ++ GY+ EA LFRR+ E
Sbjct: 103 ARRLFDGMPERNMVS----------FVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFV 152
Query: 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGF--NAFDIHVSNCLIDTYAKCGCIFSASK 193
TIL VL A+ G + C IH K G NAF V + LID Y+ CG + A
Sbjct: 153 LTTILKVLVAMDAPG-LTCC--IHACACKLGHDRNAF---VGSSLIDAYSLCGAVSHARC 206
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN----RSWRIGEEGL 249
+F+ + K+ V+WT ++S ++ + + ++A+ F +M+ G KPN S L
Sbjct: 207 VFD--GIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCL 264
Query: 250 K--FFDKMVEECEV--LPDIKHY--GCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
K + C V L D + + G L+D+ + G +E A V IP +V++W
Sbjct: 265 SSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHD--DVILW 320
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 120/256 (46%), Gaps = 23/256 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F + +++ V LS LG +H K + +V AL DMY G+++D+ +F
Sbjct: 250 NPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVF 309
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ +P +++ W+ +I+ Y++ ++ +A +F RM P+E ++ V
Sbjct: 310 EIIPHDDVILWSFLIS----------RYAQSYQNEQAFEMFLRMMRSSVV-PNEFSLSGV 358
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + Q IH K G+ + ++ V N L+D YAKC + ++ ++F S+
Sbjct: 359 LQACANVAFLDLGQQIHNLVIKLGYES-ELFVGNALMDVYAKCRNMENSLEIFR--SLRD 415
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVL 262
N VSW TII G+ G ++A+ F+ M+ + + F ++ C
Sbjct: 416 ANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQV---------TFSSVLRACANT 466
Query: 263 PDIKHYGCLIDILERA 278
IKH + ++E++
Sbjct: 467 ASIKHTVQIHSLIEKS 482
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 100/217 (46%), Gaps = 14/217 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F + +++ V + P L +HA K+G + +V ++L D Y G + + +F
Sbjct: 149 NHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVF 208
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + ++ VTW T ++ YS + +AL F +M +P+ + +V
Sbjct: 209 DGIIWKDAVTW----------TAMVSCYSENDIPEDALNTFSKMRMAG-AKPNPFVLTSV 257
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + IHG K + + HV L+D YAKCG I A +FE D
Sbjct: 258 LKAAVCLSSAVLGKGIHGCAVKTLCDT-EPHVGGALLDMYAKCGYIEDARTVFEIIPHD- 315
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+++ W+ +IS +A ++A E F RM + + PN
Sbjct: 316 -DVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPN 351
>gi|145335647|ref|NP_172798.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|110741720|dbj|BAE98806.1| hypothetical protein [Arabidopsis thaliana]
gi|332190892|gb|AEE29013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 474
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 95/278 (34%), Positives = 156/278 (56%), Gaps = 27/278 (9%)
Query: 39 YPNLGTQLHA--VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVI 96
Y +G L A +F ++ + + NT L + Y ++G ++ ++FD++PERN+ +WN
Sbjct: 100 YIEMGNMLEARSLFDQMPCRDVMSWNTVL-EGYANIGDMEACERVFDDMPERNVFSWN-- 156
Query: 97 ITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQ 156
G+I GY++ R +E L F+RM P++ T+ VL A K G +
Sbjct: 157 --------GLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFGK 208
Query: 157 LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFA 216
+H YGE G+N D++V N LID Y KCG I A ++F+ + R++L+SW T+I+G A
Sbjct: 209 WVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFK--GIKRRDLISWNTMINGLA 266
Query: 217 MHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDI 265
HG G EA+ F M+ G+ P++ +G E+GL +F+ M + ++P+I
Sbjct: 267 AHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPEI 326
Query: 266 KHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+H GC++D+L RAG L QA E + +P + + V+W T
Sbjct: 327 EHCGCVVDLLSRAGFLTQAVEFINKMPVK-ADAVIWAT 363
>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Glycine max]
Length = 609
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 162/294 (55%), Gaps = 26/294 (8%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D +T+S L++ C L G QLH + K+G ++YV L +MY + + + +
Sbjct: 132 LPDDYTFSSLLKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARR 191
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD++ E +V +N IIT +R +R NEALALFR + +P+++T+L
Sbjct: 192 VFDKIGEPCVVAYNAIITSC----------ARNSRPNEALALFRELQE-SGLKPTDVTML 240
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
L + G + + IH Y +K GF+ + + V+ LID YAKCG + A +F+D +
Sbjct: 241 VALSSCALLGALDLGRWIHEYVKKNGFDQY-VKVNTALIDMYAKCGSLDDAVSVFKD--M 297
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
R++ +W+ +I +A HG G +A+ M+K ++P+ +G EEG
Sbjct: 298 PRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGY 357
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++F M E ++P IKHYGC+ID+L RAGRLE+A + +P + T ++WRT
Sbjct: 358 EYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTP-ILWRT 410
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 106/238 (44%), Gaps = 24/238 (10%)
Query: 71 SLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE 130
++ + + ++FD++P+ ++V +N + GY+R + A+ L ++ C
Sbjct: 81 TIASMDHAHRMFDKIPQPDIVLFNTMAR----------GYARFDDPLRAILLCSQV-LCS 129
Query: 131 YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190
P + T ++L A + + + +H K G +++V LI+ Y C + +
Sbjct: 130 GLLPDDYTFSSLLKACARLKALEEGKQLHCLAVKLGVGD-NMYVCPTLINMYTACNDVDA 188
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP---------NRS 241
A ++F+ + +V++ II+ A + EA+ F +Q+ GLKP +
Sbjct: 189 ARRVFD--KIGEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTMLVALSSC 246
Query: 242 WRIGEEGL-KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNV 298
+G L ++ + V++ +K LID+ + G L+ A V +P + T
Sbjct: 247 ALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQA 304
>gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Brachypodium distachyon]
Length = 611
Score = 171 bits (433), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 117/351 (33%), Positives = 174/351 (49%), Gaps = 38/351 (10%)
Query: 23 DSFTYSFLIRTCVTL-SYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG--FLKDSS 79
+ FT+ FL+++C L P++G Q HA K GF + YV+ L MY G FL D+
Sbjct: 134 NKFTFPFLLKSCAALPGSPDVGLQAHAAALKFGFAADHYVSNTLIHMYSCFGAGFLGDAR 193
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
+F+ +P + VTW + +I GY R S++A+ LFR M P E+T+
Sbjct: 194 NVFERMPRESAVTW----------SAMIGGYVRAGLSSDAVVLFRGMQV-SGVRPDEVTV 242
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+ VL A G + + + + E+ G + + N LIDT AKCG + A +FE
Sbjct: 243 IGVLAAAADLGALELTRWVGRFVEREGIGK-SVTLCNALIDTLAKCGDVDGAVAVFE--G 299
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
++ + +VSWT++I AM G GKEAV FE M+ VG+ P+ IG +EG
Sbjct: 300 MEERTVVSWTSVIDALAMEGRGKEAVGVFEEMKAVGVLPDDVAFIGVLTACSHAGMVDEG 359
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRL 308
+FD M E + P I+HYGC++D+ RAG +EQ E +P + N ++WRT
Sbjct: 360 RGYFDSMKTEYGIEPKIEHYGCMVDMFGRAGMVEQGLEFVRAMPMK-PNPIIWRTLVAAC 418
Query: 309 LINSYFFSPITLNSQRLFFFPAA---------LYALTQILGFKPLFRKESS 350
+ ++ L FPA +YALTQ K R+E S
Sbjct: 419 RAHGRLELGESITRNLLNEFPAHEANYVMLSNVYALTQRWKEKSEIRREMS 469
>gi|357441857|ref|XP_003591206.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480254|gb|AES61457.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 490
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 171/320 (53%), Gaps = 39/320 (12%)
Query: 14 SHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG 73
+H+ LP D+FT+ L++ L +LG LHA + +GF H V L ++Y + G
Sbjct: 101 THNILP---DNFTFPPLLKATSYLRDYDLGQCLHAHVTALGFYRHSPVEIGLLEVYSNCG 157
Query: 74 FLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSR 112
++D++K+FDE+ R +V WN++I G +V W +I ++
Sbjct: 158 KMEDANKVFDEMLHREVVVWNIMINGFCKMGDLEIGLKLFKRMGQRSVVSWNLMISCLAQ 217
Query: 113 MNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDI 172
+ EA +FR M + EP + T++ VLP + G+V + IH Y + +G I
Sbjct: 218 RKKDGEAFGIFREMLEQGF-EPDDATLVTVLPVCARLGDVDAGEWIHSYADGKGLLRKVI 276
Query: 173 HVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQ 232
V N L+D Y KCG + +A K+F + + +KN+VSW +ISG ++G G+ VE FE+M
Sbjct: 277 SVGNSLVDFYCKCGNLEAAWKVFNEMT--KKNVVSWNAMISGLGLNGKGELGVELFEKMA 334
Query: 233 KVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRL 281
+ G+ P+ S +G ++G + FD M + ++ P ++HYGC++D+L R G +
Sbjct: 335 RKGVTPSDSTFVGVLACCAHAGFVDKGREIFDSMTVKFKLSPKLEHYGCVVDLLGRCGHV 394
Query: 282 EQAEEVASGIPSQITNVVVW 301
++A ++ +P + N +W
Sbjct: 395 KEAYDLIRNMP-LMPNAALW 413
>gi|9958072|gb|AAG09561.1|AC011810_20 Hypothetical protein [Arabidopsis thaliana]
Length = 421
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 95/279 (34%), Positives = 156/279 (55%), Gaps = 27/279 (9%)
Query: 38 SYPNLGTQLHA--VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNV 95
Y +G L A +F ++ + + NT L + Y ++G ++ ++FD++PERN+ +WN
Sbjct: 46 GYIEMGNMLEARSLFDQMPCRDVMSWNTVL-EGYANIGDMEACERVFDDMPERNVFSWN- 103
Query: 96 IITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNC 155
G+I GY++ R +E L F+RM P++ T+ VL A K G
Sbjct: 104 ---------GLIKGYAQNGRVSEVLGSFKRMVDEGSVVPNDATMTLVLSACAKLGAFDFG 154
Query: 156 QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGF 215
+ +H YGE G+N D++V N LID Y KCG I A ++F+ + R++L+SW T+I+G
Sbjct: 155 KWVHKYGETLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFK--GIKRRDLISWNTMINGL 212
Query: 216 AMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPD 264
A HG G EA+ F M+ G+ P++ +G E+GL +F+ M + ++P+
Sbjct: 213 AAHGHGTEALNLFHEMKNSGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSIMPE 272
Query: 265 IKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
I+H GC++D+L RAG L QA E + +P + + V+W T
Sbjct: 273 IEHCGCVVDLLSRAGFLTQAVEFINKMPVK-ADAVIWAT 310
>gi|297740547|emb|CBI30729.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 171 bits (432), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 102/322 (31%), Positives = 163/322 (50%), Gaps = 40/322 (12%)
Query: 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF 74
H+ + P D +T++F +++C + S G Q+H K G +++ L +Y S G
Sbjct: 101 HASVLP--DKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGC 158
Query: 75 LKDSSKLFDELPERNLVTWNVIITG----------------------LVKWTGIIDGYSR 112
++D+ L D + ER++V+WN +++ +V W +I GYS
Sbjct: 159 IEDARHLLDRMLERDVVSWNALLSAYAERGLMELASRRVFGETPVKNVVSWNAMITGYSH 218
Query: 113 MNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDI 172
R +E L LF M +P T+++VL A G + + +H Y +K G + D
Sbjct: 219 AGRFSEVLVLFEDMQHAG-VKPDNCTLVSVLSACAHVGALSQGEWVHAYIDKNGI-SIDG 276
Query: 173 HVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQ 232
V+ L+D Y+KCG I A ++F S RK++ +W +IISG + HG G+ A++ F M
Sbjct: 277 FVATALVDMYSKCGSIEKALEVF--NSCLRKDISTWNSIISGLSTHGSGQHALQIFSEML 334
Query: 233 KVGLKPNR---------SWRIG--EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRL 281
G KPN R G +EG + F+ MV + P I+HYGC++D+L R G L
Sbjct: 335 VEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLL 394
Query: 282 EQAEEVASGIPSQITNVVVWRT 303
E+AEE+ +P Q VVW +
Sbjct: 395 EEAEELVQKMP-QKEASVVWES 415
>gi|356542056|ref|XP_003539487.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18970-like [Glycine max]
Length = 595
Score = 170 bits (431), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 105/303 (34%), Positives = 166/303 (54%), Gaps = 34/303 (11%)
Query: 22 FDSFTYSFLIRTCV---TLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
FD +TY+F++ C + S +G QLHA+ K G +S++ V T Y S + S
Sbjct: 223 FDEYTYNFVLGACARSPSASTLWVGRQLHALIVKHGVESNIVVPTTKVYFYASNKDIISS 282
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNE-----ALALFRRM-AACEYT 132
K+FDE+P R+ VTWN +IT GYS + N+ AL LF M
Sbjct: 283 RKVFDEMPRRSTVTWNAMIT----------GYSSLKEGNKKYALNALYLFIDMLIDVSGI 332
Query: 133 EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN-AFDIHVSNCLIDTYAKCGCIFSA 191
+P+ TI++VL A+ + G + IHG+ EK D+ + L+D Y+KCGC+ SA
Sbjct: 333 KPTATTIVSVLSAVSQIGMLETGACIHGFAEKTVCTPEDDVFIGTGLVDMYSKCGCLDSA 392
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS---------- 241
+F +++KN+++WT + +G A+HG GK+++E +M G+KPN +
Sbjct: 393 LSVF--WRMNQKNIMTWTAMTTGLAIHGKGKQSLEVLYKMGAYGVKPNEATFTSFLSACC 450
Query: 242 -WRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
+ EEGL+ F +M V+P I+HYGC++D+L RAG+LE+A + +P + V+
Sbjct: 451 HGGLVEEGLQLFLEMKRTFGVMPQIQHYGCIVDLLGRAGKLEEAYDFIMQMPIN-PDAVI 509
Query: 301 WRT 303
WR+
Sbjct: 510 WRS 512
>gi|359491319|ref|XP_002281821.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74400-like [Vitis vinifera]
Length = 482
Score = 170 bits (431), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 100/312 (32%), Positives = 161/312 (51%), Gaps = 42/312 (13%)
Query: 19 PPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
P DSF+ F ++ C S G Q+HA+ GF+ +++ T+L MY + G + D+
Sbjct: 65 PSSIDSFSLMFALKACTLKSSLVEGKQMHALVINFGFEPIIFLQTSLISMYSATGNVADA 124
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
+FDE+P +NL++ WT +I Y R N+AL LFR+M + +P +T
Sbjct: 125 HNMFDEIPSKNLIS----------WTSVISAYVDNQRPNKALQLFRQMQM-DDVQPDIVT 173
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+ L A G + + IH Y RG + D+ ++N LI+ Y+KCG I +A +LF+ T
Sbjct: 174 VTVALSACADLGALDMGEWIHAYIRHRGLDT-DLCLNNSLINMYSKCGEIGTARRLFDGT 232
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG------------- 245
+K++ +WT++I G A+HG +EA++ F M++ + ++ R G
Sbjct: 233 Q--KKDVTTWTSMIVGHALHGQAEEALQLFTEMKETNKRARKNKRNGEHESSLVLPNDVT 290
Query: 246 --------------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
EEG + F M E+ + P I H+GC++D+L RAG L +A E +
Sbjct: 291 FMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRISHFGCMVDLLCRAGLLTEAYEFILKM 350
Query: 292 PSQITNVVVWRT 303
P + N VVWRT
Sbjct: 351 PVR-PNAVVWRT 361
>gi|145333540|ref|NP_001078415.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658995|gb|AEE84395.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 462
Score = 170 bits (431), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 102/274 (37%), Positives = 161/274 (58%), Gaps = 27/274 (9%)
Query: 42 LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV 101
LG +H+V + GF S +YV +L +Y + G + + K+FD++PE++LV WN
Sbjct: 6 LGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWN------- 58
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
+I+G++ + EALAL+ M + + +P TI+++L A K G + + +H Y
Sbjct: 59 ---SVINGFAENGKPEEALALYTEMNS-KGIKPDGFTIVSLLSACAKIGALTLGKRVHVY 114
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
K G ++H SN L+D YA+CG + A LF D VD KN VSWT++I G A++G G
Sbjct: 115 MIKVGLTR-NLHSSNVLLDLYARCGRVEEAKTLF-DEMVD-KNSVSWTSLIVGLAVNGFG 171
Query: 222 KEAVENFERMQKV-GLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYG 269
KEA+E F+ M+ GL P +G +EG ++F +M EE ++ P I+H+G
Sbjct: 172 KEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFG 231
Query: 270 CLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
C++D+L RAG++++A E +P Q NVV+WRT
Sbjct: 232 CMVDLLARAGQVKKAYEYIKSMPMQ-PNVVIWRT 264
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 106/230 (46%), Gaps = 35/230 (15%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT L+ C + LG ++H KVG +++ + L D+Y G ++++ LF
Sbjct: 88 DGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 147
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ ++N V+W +I GL ++G+ + EA+ LF+ M + E P EIT + +
Sbjct: 148 DEMVDKNSVSWTSLIVGLA-----VNGFGK-----EAIELFKYMESTEGLLPCEITFVGI 197
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAF-----------DIHVSNCLIDTYAKCGCIFSA 191
L A G V K GF F I C++D A+ G + A
Sbjct: 198 LYACSHCGMV-----------KEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKA 246
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
+ + + + N+V W T++ +HG A F R+Q + L+PN S
Sbjct: 247 YEYIKSMPM-QPNVVIWRTLLGACTVHGDSDLA--EFARIQILQLEPNHS 293
>gi|297733959|emb|CBI15206.3| unnamed protein product [Vitis vinifera]
Length = 416
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 107/295 (36%), Positives = 155/295 (52%), Gaps = 27/295 (9%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
+ D+FTYSFL++ C L LG Q+H K G + HV+V L MY ++ ++
Sbjct: 48 VLDNFTYSFLVKVCGQLGSDLLGKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATH 107
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
LF+E+P+ LV WN IID R EA+ LF RM +P + T +
Sbjct: 108 LFEEMPKSYLVAWNT----------IIDCNVYCGRYKEAIELFFRMLQSG-LKPDDATFV 156
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
L A GE+ + +H + G + VSN LID YAKCG + +A ++F +
Sbjct: 157 VTLSACAALGELDIGRRVHSCIDHTGLGNV-VSVSNSLIDMYAKCGVVEAAYEIF--NKM 213
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK-PNRSWRIG-----------EEG 248
+N+VSW T+I G AMHG G EA+E F +M + L PN +G EEG
Sbjct: 214 KGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEKLATPNEVTFLGVLCACSHGGMVEEG 273
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++FD M + + P IKHYG ++DIL RAG +E+A + +P + +N +VWRT
Sbjct: 274 RRYFDIMRRDYNIQPTIKHYGSMVDILGRAGLVEEAYRLIKSMPIE-SNSIVWRT 327
>gi|147810456|emb|CAN69807.1| hypothetical protein VITISV_019655 [Vitis vinifera]
Length = 516
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 107/295 (36%), Positives = 155/295 (52%), Gaps = 27/295 (9%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
+ D+FTYSFL++ C L LG Q+H K G + HV+V L MY ++ ++
Sbjct: 148 VLDNFTYSFLVKVCGQLGSDLLGKQIHCNVLKHGLEEHVFVRNTLVHMYGMFKDIEAATH 207
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
LF+E+P+ LV WN IID R EA+ LF RM +P + T +
Sbjct: 208 LFEEMPKSYLVAWNT----------IIDCNVYCGRYKEAIELFFRMLQ-SGLKPDDATFV 256
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
L A GE+ + +H + G + VSN LID YAKCG + +A ++F +
Sbjct: 257 VTLSACAALGELDIGRRVHSCIDHTGLGNV-VSVSNSLIDMYAKCGVVEAAYEIF--NKM 313
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK-PNRSWRIG-----------EEG 248
+N+VSW T+I G AMHG G EA+E F +M + L PN +G EEG
Sbjct: 314 KGRNIVSWNTMILGLAMHGHGDEALELFSKMLEEKLATPNEVTFLGVLCACSHGGMVEEG 373
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++FD M + + P IKHYG ++DIL RAG +E+A + +P + +N +VWRT
Sbjct: 374 RRYFDIMRRDYNIQPTIKHYGSMVDILGRAGLVEEAYRLIKSMPIE-SNSIVWRT 427
>gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor]
Length = 607
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 122/381 (32%), Positives = 184/381 (48%), Gaps = 55/381 (14%)
Query: 10 IYIHSHSPLP----------PLF-------DSFTYSFLIRTCVTL-SYPNLGTQLHAVFS 51
I H+ SPLP PL + FT+ FL++ C L +P +G Q HA
Sbjct: 100 IRAHAASPLPSARLRAAAFFPLMLRSAVLPNKFTFPFLLKACAALPGFPGVGLQAHAAAL 159
Query: 52 KVGFQSHVYVNTALGDMYVSLG--FLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDG 109
K GF + YV+ L MY G FL D+ +FD + + ++VTW + +I G
Sbjct: 160 KFGFATDQYVSNTLIHMYSCFGGEFLGDARNVFDRMDKSSVVTW----------SAMIGG 209
Query: 110 YSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNA 169
Y R S++A+ LFR M A P E+T++ VL A G + + + + E+ G
Sbjct: 210 YVRGGLSSDAVGLFREMQA-SGVRPDEVTVIGVLAAAADLGALELARWVGRFVEREGIGK 268
Query: 170 FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFE 229
+ + N LID AKCG + A +F+ ++ + +VSWT++I AM G GKEAV FE
Sbjct: 269 -SVTLCNALIDALAKCGDVDGAVAVFQ--GMEERTVVSWTSVIDALAMEGRGKEAVAVFE 325
Query: 230 RMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERA 278
M+ G++P+ IG +EG +FD M E + P I+HYGC++D+ RA
Sbjct: 326 AMKTAGVRPDDVVFIGVLTACSHAGMVDEGYGYFDSMKMEYGIDPKIEHYGCMVDMFGRA 385
Query: 279 GRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAA------- 331
G +E+A E +P + N ++WRT + ++ L +PA
Sbjct: 386 GMVERAMEFIHTMPMK-PNPIIWRTLVAACRAHGRLELGESITRNLLNEYPAHEANYVML 444
Query: 332 --LYALTQILGFKPLFRKESS 350
+YALTQ K R+E S
Sbjct: 445 SNVYALTQRWKEKSEIRREMS 465
>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
Length = 563
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 165/295 (55%), Gaps = 28/295 (9%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P ++FT +F+++ C + G Q+HA + GF S YV ++L + Y + +
Sbjct: 88 PNPNTFTMAFVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIAR 147
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
K+FDE+ ERNLV W+ ++ GY+R+ NEAL +FR M EP E+++
Sbjct: 148 KVFDEITERNLVC----------WSAMVSGYARLGMINEALIMFREMQVVG-IEPDEVSL 196
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+ VL A G + + +H Y +KR + D+ ++ LI+ YAKCGCI A ++F++
Sbjct: 197 VGVLSACAMVGALDIGKWVHAYIKKRMIHV-DLELNTALINMYAKCGCIEKAREIFDEMR 255
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
V K+ +W+++I G A+HG+ ++A+ F RM++ KPN IG +G
Sbjct: 256 V--KDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFIGILSACAHGGLVSDG 313
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+++ M+ E + P ++HYGC++D+L R G +++A + A IP+ + V+WRT
Sbjct: 314 KRYWSSML-ELGIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIPT--PDPVIWRT 365
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 109/220 (49%), Gaps = 22/220 (10%)
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
+ K+F ++P + +N +I G + Y+++ S E + LF+ M Y P+
Sbjct: 43 ARKIFSQIPNPGIFAYNSVIRGCL--------YTKIP-SKEPIHLFKDMVGKGYPNPNTF 93
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
T+ VL A + + IH + GF++ +V + L++ Y+KC I A K+F++
Sbjct: 94 TMAFVLKACSIIMALEEGKQIHAQILRSGFSS-SPYVQSSLVNFYSKCEEITIARKVFDE 152
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGL-------- 249
+ +NLV W+ ++SG+A GM EA+ F MQ VG++P+ +G
Sbjct: 153 --ITERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALD 210
Query: 250 --KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
K+ +++ + D++ LI++ + G +E+A E+
Sbjct: 211 IGKWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREI 250
>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 157/293 (53%), Gaps = 27/293 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL-GFLKDSSKL 81
+ + + F+++ C L NLG +H K GF ++V + MY G ++ + KL
Sbjct: 108 NKYAFPFVLKACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKL 167
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FDE+P+ + VTW T +I GY+R+ +S A+ LFR+M P ++T+++
Sbjct: 168 FDEMPKLDPVTW----------TAMIGGYARLGQSAGAVGLFRKMQIAGVC-PDDVTMVS 216
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL A G + + I Y EK + +SN L+D +AKCG + A LF + S
Sbjct: 217 VLSACTDLGALELGKWIESYIEKERVLK-TVELSNALVDMFAKCGDVDKALGLFRNMS-- 273
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
++ +VSWT++I G AMHG G EAV FE M+ G+ P IG E G +
Sbjct: 274 KRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQ 333
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+F +M + ++P I+HYGC++D+L RAG + +A E +P + N ++WRT
Sbjct: 334 YFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIE-PNPIIWRT 385
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 83/198 (41%), Gaps = 14/198 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ C L LG + + K V ++ AL DM+ G + + LF
Sbjct: 210 DDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLF 269
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ +R +V+W +I GL + R EA++LF M A P +I + +
Sbjct: 270 RNMSKRTIVSWTSVIVGL----------AMHGRGLEAVSLFEEMKASGMV-PEDIAFIGL 318
Query: 143 LPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A +G V R Q + G I C++D ++ G + A + E ++
Sbjct: 319 LSACSHSGLVERGRQYFSEMTRQFGI-VPKIEHYGCMVDLLSRAGLVTEALEFVERMPIE 377
Query: 202 RKNLVSWTTIISGFAMHG 219
N + W T+IS +HG
Sbjct: 378 -PNPIIWRTLISACRVHG 394
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 134/305 (43%), Gaps = 32/305 (10%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
+++ C TL P L QLH K+GFQ++ V T F SS L D +P
Sbjct: 13 ILQACNTL--PKLA-QLHTHIIKLGFQNNPLVLTK---------FTSASSNL-DAIPYAM 59
Query: 90 LVTWNV---IITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI 146
+ ++V + ++ II Y+ ++S + + P++ VL A
Sbjct: 60 SLVFSVEDARVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKAC 119
Query: 147 WKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC-GCIFSASKLFEDTSVDRKNL 205
++ + +HG K GF+ DI V N ++ Y C G + A KLF++ + + +
Sbjct: 120 AGLRDLNLGKAVHGSLVKFGFDD-DIFVQNTMVHMYCCCSGGMEFARKLFDE--MPKLDP 176
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI----------GEEGLKFFDKM 255
V+WT +I G+A G AV F +MQ G+ P+ + E K+ +
Sbjct: 177 VTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESY 236
Query: 256 VEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFF 315
+E+ VL ++ L+D+ + G +++A + + + +V W + + L ++
Sbjct: 237 IEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKR--TIVSWTSVIVGLAMHGRGL 294
Query: 316 SPITL 320
++L
Sbjct: 295 EAVSL 299
>gi|224064340|ref|XP_002301427.1| predicted protein [Populus trichocarpa]
gi|222843153|gb|EEE80700.1| predicted protein [Populus trichocarpa]
Length = 442
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 163/317 (51%), Gaps = 37/317 (11%)
Query: 19 PPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
PP + T++FL C + G +H F K GF VY TAL DMY LG L +
Sbjct: 7 PP--NELTFTFLFPACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGVLMLA 64
Query: 79 SKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSN 117
++FDE+ R++ TWN +I G +V WT +I GYS+
Sbjct: 65 RQVFDEMTVRDIPTWNSLIAGYSRSGDMEGALELFKLMPSRSVVSWTTMISGYSQNGMYT 124
Query: 118 EALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
+AL +F +M + P+E+TI +V A K G + + I Y G +++VSN
Sbjct: 125 KALEMFLKMEKDKEVRPNEVTIASVFSACAKLGALEVGERIESYARDNGLMK-NLYVSNT 183
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
L++ YA+CG I +A +F + R+NL SW +++ G A+HG EA++ +++M G++
Sbjct: 184 LLEMYARCGKIDAARHVFNEIG-KRRNLCSWNSMMMGLAVHGRSNEALQLYDQMLGEGIE 242
Query: 238 PNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
P+ +G +G + F M ++P ++HYGC++D+L RAG L++A +
Sbjct: 243 PDDVTFVGLILACTHGGLVAKGWQLFQSMETNFSIVPKLEHYGCMVDLLGRAGELQEAYD 302
Query: 287 VASGIPSQITNVVVWRT 303
+ +P + + V+W T
Sbjct: 303 LVKSMPMK-PDSVIWGT 318
>gi|225451344|ref|XP_002274803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18970
[Vitis vinifera]
gi|298204853|emb|CBI34160.3| unnamed protein product [Vitis vinifera]
Length = 471
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 163/299 (54%), Gaps = 27/299 (9%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNL--GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
+FD FTY F + C P+L G Q+HA K G S+V V T Y + + +
Sbjct: 103 VFDDFTYIFALGACA--RSPSLWEGRQIHARILKQGVWSNVLVQTTAIHFYANNNDVALA 160
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA--ACEYTEPSE 136
+FDE+ +R+ VTWN +ITG G + Y+R +AL LFR M AC +P++
Sbjct: 161 RLVFDEMRKRSSVTWNAMITGYCSQRGKVVCYAR-----DALVLFRAMLVDACG-VKPTD 214
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN-AFDIHVSNCLIDTYAKCGCIFSASKLF 195
T++ VL A + G + +HGY EK A D+ V L+D Y+KCGC+ SA +F
Sbjct: 215 TTMVCVLSAASQLGVLETGVGVHGYIEKTVLAPANDVFVGTGLVDMYSKCGCLGSALCIF 274
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRI 244
+ +N+++WT +I+G A HG GKEA+E + M G+KPN +
Sbjct: 275 --WGMKERNVLTWTAMITGLARHGRGKEALELLDEMVAYGVKPNAVTFTSLFSACCHAGL 332
Query: 245 GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
EEGL+ F M + V P I+HYGC++D+L RAG L++A + G+P + + ++WR+
Sbjct: 333 VEEGLQLFHSMRSKFGVTPGIQHYGCIVDLLGRAGHLKEAYDFVRGMPVE-PDAILWRS 390
>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
Length = 1130
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 99/313 (31%), Positives = 165/313 (52%), Gaps = 37/313 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ FL+++ + S +LG +HA + G +V T+L MY S G L + ++F
Sbjct: 63 DFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVF 122
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
DE+P+ +L +WN II ++ W+ +I+GY R + EALA
Sbjct: 123 DEIPQPDLPSWNSIINANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALA 182
Query: 122 LFR--RMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
LFR +M P+E T+ VL A + G + + + H Y +K G D+ + LI
Sbjct: 183 LFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGM-PVDVVLGTALI 241
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D YAKCG + A+ +F + + K++++W+ +ISG AMHG+ +E V F +M G++PN
Sbjct: 242 DMYAKCGSVEKATWVFSNLGPN-KDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPN 300
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
+ EG + +M E+ ++P I+HYGC++D+ RAGR+++A V
Sbjct: 301 AVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVV 360
Query: 289 SGIPSQITNVVVW 301
+P + +V+VW
Sbjct: 361 KSMPME-PDVLVW 372
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 97/229 (42%), Gaps = 40/229 (17%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
+++++Q + ++ P + FT S ++ C L G HA K G V +
Sbjct: 183 LFREMQMLGVNDVRP-----NEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLG 237
Query: 63 TALGDMYVSLGFLKDSSKLFDEL-PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALA 121
TAL DMY G ++ ++ +F L P ++++ W+ +I+GL + + E +
Sbjct: 238 TALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGL----------AMHGLAEECVG 287
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF----------- 170
LF +M + P+ +T LAV C +HG G +
Sbjct: 288 LFSKMIN-QGVRPNAVTFLAVF-----------CACVHGGLVSEGKDYLRRMTEDYSIIP 335
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
I C++D Y + G I A + + ++ LV W ++SG MHG
Sbjct: 336 TIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLV-WGALLSGSRMHG 383
>gi|359493517|ref|XP_002264078.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Vitis vinifera]
Length = 573
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/323 (32%), Positives = 164/323 (50%), Gaps = 45/323 (13%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P + F Y ++++C + P +H + GF+ + V TAL D Y+ +S+
Sbjct: 151 PWPNHFIYPHVLKSCTQVVGPGSARMVHCQVLRSGFEQYPVVQTALLDAYLRFWSDVESA 210
Query: 80 KL-FDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSN 117
+L FDE+ ERN+V+W +I+G + W +I GY++
Sbjct: 211 RLLFDEMTERNVVSWTAMISGYTRLGQIGNAVLLFEEMPERDVPSWNALIAGYTQNGLFM 270
Query: 118 EALALFRRMAACEY------TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD 171
EAL+LFRRM A E P+++T + L A G +R + IHGY + G D
Sbjct: 271 EALSLFRRMIAVEAGAWGQGNRPNQVTAVCSLSACGHTGMLRLGKWIHGYVYRNGL-GLD 329
Query: 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
VSN L+D Y KCGC+ A ++F+ T ++L SW ++I+ A+HG + A+ FE M
Sbjct: 330 SFVSNALVDMYGKCGCLKEARRVFDRTL--ERSLTSWNSMINCLALHGQSQNAISVFEEM 387
Query: 232 QKVG--LKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERA 278
G +KP+ IG E+G +F+ M + + P I+HYGCL+D+L RA
Sbjct: 388 MTCGSGVKPDEVTFIGLLNACTHGGLVEKGWLYFELMTQNYGIEPQIEHYGCLVDLLGRA 447
Query: 279 GRLEQAEEVASGIPSQITNVVVW 301
G+ E+A EV G+ + + V+W
Sbjct: 448 GQFEEAMEVVRGMRIE-PDEVIW 469
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 16/203 (7%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKLFDELPER 88
L+ C+ L++ QL A +G Q+H Y L ++L L + +FD +
Sbjct: 61 LLERCIHLNHLK---QLQAFLITLGHAQTHFYAFKLLRFCTLALSNLSYARFIFDHVESP 117
Query: 89 NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148
N+ + +IT Y+ + AL L+R M P+ VL + +
Sbjct: 118 NVYLYTAMIT----------AYASHSDHTSALLLYRNMVRRRRPWPNHFIYPHVLKSCTQ 167
Query: 149 NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSW 208
+ +++H + GF + + V L+D Y + +++L D +R N+VSW
Sbjct: 168 VVGPGSARMVHCQVLRSGFEQYPV-VQTALLDAYLRFWSDVESARLLFDEMTER-NVVSW 225
Query: 209 TTIISGFAMHGMGKEAVENFERM 231
T +ISG+ G AV FE M
Sbjct: 226 TAMISGYTRLGQIGNAVLLFEEM 248
>gi|357455473|ref|XP_003598017.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487065|gb|AES68268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 479
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 166/308 (53%), Gaps = 37/308 (12%)
Query: 14 SHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG 73
+H P D+FT+SF+++ L + NLG QLH K GF++H YV +L MY L
Sbjct: 105 AHRP-----DNFTFSFILKIIARLRFVNLGKQLHCSLFKFGFENHTYVRNSLIHMYGMLK 159
Query: 74 FLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT- 132
++ + +LF+E+ + NLV+WN IID + + NEA+ LF +M ++
Sbjct: 160 DIEIAHQLFEEMYQPNLVSWN----------SIIDCHVYCGKYNEAIDLFTKMVQQQHNG 209
Query: 133 ---EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF--DIHVSNCLIDTYAKCGC 187
+P T++ L A G + + +H + + G N+F I V N L+D YAKCG
Sbjct: 210 MELQPDHATLVVTLSACGAIGSLDFGRKVHSF-VRDGVNSFGESISVFNALVDMYAKCGA 268
Query: 188 IFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL-KPNR------ 240
+ A + F +++ RKN+VSW +I GFA HG G+EA+ F RM + +P+
Sbjct: 269 VEEAYETF--SNMKRKNVVSWNVMILGFASHGNGEEALALFTRMLHENVERPDEITFLCV 326
Query: 241 -----SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQI 295
+ +EG ++F+ M + + P IKHYGC++D+L RAG +A E+ +P +
Sbjct: 327 LCACSHGGLVDEGRRYFEIMNRDYNIKPTIKHYGCMVDLLGRAGLFVEAYELIKSMPVE- 385
Query: 296 TNVVVWRT 303
N ++WRT
Sbjct: 386 CNAIIWRT 393
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 73/295 (24%), Positives = 121/295 (41%), Gaps = 38/295 (12%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
L C TL++ Q+HA GF ++ ++ + + + +FD++P+ +
Sbjct: 18 LFNHCSTLNHL---KQIHARIFLTGFNHNLILSGKIIMFCAVSQNMNYALNVFDKIPKPD 74
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
WN +I G T S+ A+ F+RM P T +L I +
Sbjct: 75 SFLWNTMIRGFGNST---------THSHNAIHFFKRMQLAH--RPDNFTFSFILKIIARL 123
Query: 150 GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWT 209
V + +H K GF +V N LI Y I A +LFE+ + + NLVSW
Sbjct: 124 RFVNLGKQLHCSLFKFGFEN-HTYVRNSLIHMYGMLKDIEIAHQLFEE--MYQPNLVSWN 180
Query: 210 TIISGFAMHGMGKEAVENFERMQK-----VGLKPNRSWRI------GEEGLKFFDKMVEE 258
+II G EA++ F +M + + L+P+ + + G G F + V
Sbjct: 181 SIIDCHVYCGKYNEAIDLFTKMVQQQHNGMELQPDHATLVVTLSACGAIGSLDFGRKVHS 240
Query: 259 CEVLPDIKHYG-------CLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFL 306
V + +G L+D+ + G +E+A E S + + NVV W L
Sbjct: 241 F-VRDGVNSFGESISVFNALVDMYAKCGAVEEAYETFSNMKRK--NVVSWNVMIL 292
>gi|296083752|emb|CBI23741.3| unnamed protein product [Vitis vinifera]
Length = 545
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 93/304 (30%), Positives = 163/304 (53%), Gaps = 34/304 (11%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D FT S L + L G +H ++GF S V ++ MY G ++S K
Sbjct: 121 LPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRK 180
Query: 81 LFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEA 119
+FDE+ RN +WNV+I G + WT +I+GY S+EA
Sbjct: 181 VFDEMTIRNSGSWNVLIAGYAVSGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEA 240
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
L+LFR M + EP+ +++++VLPA + + + IHG+ ++ N ++ + N LI
Sbjct: 241 LSLFRDMQVIDGIEPNRVSLVSVLPACSSFSGLLSGRQIHGFAVRKELNN-EVSLCNALI 299
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D Y+KCG + SA ++FED S+ K+ +SW+++ISG+ +HG G+EA+ +++M + G++P+
Sbjct: 300 DMYSKCGSLDSARRVFEDDSL-CKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPD 358
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
+G EGL + ++ + + P ++ + C++D+L RAG+L+ A +
Sbjct: 359 MITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFI 418
Query: 289 SGIP 292
+P
Sbjct: 419 KAMP 422
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/236 (25%), Positives = 102/236 (43%), Gaps = 42/236 (17%)
Query: 35 VTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWN 94
VT L Q H+ +G + + T L Y S +FD L +N+ WN
Sbjct: 34 VTHKSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWN 93
Query: 95 VIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRN 154
+I+GY++ NEA LF +M + + P + T+ + + G + +
Sbjct: 94 ----------SLINGYAKNRLYNEAFQLFNQMCSSDVL-PDDFTLSTLSKVSSELGALFS 142
Query: 155 CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV-------------- 200
+ IHG + GF + D V+N ++ Y KCG + K+F++ ++
Sbjct: 143 GKSIHGKSIRIGFVS-DTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYA 201
Query: 201 ------------DR---KNLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNR 240
DR +N+ SWT +I+G+ +G EA+ F MQ + G++PNR
Sbjct: 202 VSGNLVVGRRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNR 257
>gi|224065565|ref|XP_002301860.1| predicted protein [Populus trichocarpa]
gi|222843586|gb|EEE81133.1| predicted protein [Populus trichocarpa]
Length = 933
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 107/374 (28%), Positives = 177/374 (47%), Gaps = 80/374 (21%)
Query: 3 VYKQLQQIYIHSHSPLPPLF------------DSFTYSFLIRTCVTLSYPNLGTQLHAVF 50
VY + + ++ S+ P+ L S+T+ LI+ C +S +H
Sbjct: 47 VYNAMIKGFVQSYQPVQALELYVQMLRANVSPTSYTFPSLIKACGLVSQLRFAEAVHGHV 106
Query: 51 SKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK-------- 102
+ GF SHV+V T+L D Y S+G +++S ++FDE+PER++ W +++GLV+
Sbjct: 107 WRNGFDSHVFVQTSLVDFYSSMGRIEESVRVFDEMPERDVFAWTTMVSGLVRVGDMSSAG 166
Query: 103 -------------WTGIIDGYSRM-------------------------------NRSNE 118
W +IDGY+R+ R E
Sbjct: 167 RLFDMMPDRNLATWNTLIDGYARLREVDVAELLFNQMPARDIISWTTMINCYSQNKRFRE 226
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
AL +F MA P E+T+ V+ A G + + IH Y + GFN D+++ + L
Sbjct: 227 ALGVFNEMAK-HGISPDEVTMATVISACAHLGALDLGKEIHYYIMQHGFN-LDVYIGSAL 284
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
ID YAKCG + + +F + KNL W ++I G A+HG +EA+ F++M++ +KP
Sbjct: 285 IDMYAKCGSLDRSLLMF--FKLREKNLFCWNSVIEGLAVHGYAEEALAMFDKMEREKIKP 342
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
N + EEG K F M + + P ++HYGC++D+L +AG LE+A ++
Sbjct: 343 NGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVEHYGCMVDLLSKAGLLEEALQL 402
Query: 288 ASGIPSQITNVVVW 301
+ + N V+W
Sbjct: 403 IRTMKLE-PNAVIW 415
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 98/211 (46%), Gaps = 27/211 (12%)
Query: 13 HSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL 72
H SP D T + +I C L +LG ++H + GF VY+ +AL DMY
Sbjct: 237 HGISP-----DEVTMATVISACAHLGALDLGKEIHYYIMQHGFNLDVYIGSALIDMYAKC 291
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT 132
G L S +F +L E+NL WN +I GL + GY+ EALA+F +M E
Sbjct: 292 GSLDRSLLMFFKLREKNLFCWNSVIEGLA-----VHGYAE-----EALAMFDKMER-EKI 340
Query: 133 EPSEITILAVLPA-----IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC 187
+P+ +T ++VL A + + G R + + G + C++D +K G
Sbjct: 341 KPNGVTFVSVLSACNHAGLIEEGRKRFASMTRDHSIPPGVEHY-----GCMVDLLSKAGL 395
Query: 188 IFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218
+ A +L ++ N V W ++SG +H
Sbjct: 396 LEEALQLIRTMKLE-PNAVIWGALLSGCKLH 425
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 95/212 (44%), Gaps = 12/212 (5%)
Query: 97 ITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQ 156
I + + +I G+ + + +AL L+ +M + P+ T +++ A ++R +
Sbjct: 42 IPNVFVYNAMIKGFVQSYQPVQALELYVQMLRANVS-PTSYTFPSLIKACGLVSQLRFAE 100
Query: 157 LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFA 216
+HG+ + GF++ + V L+D Y+ G I + ++F++ + +++ +WTT++SG
Sbjct: 101 AVHGHVWRNGFDS-HVFVQTSLVDFYSSMGRIEESVRVFDE--MPERDVFAWTTMVSGLV 157
Query: 217 MHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLP--DIKHYGCLIDI 274
G A F+ M L + G L+ D +P DI + +I+
Sbjct: 158 RVGDMSSAGRLFDMMPDRNLATWNTLIDGYARLREVDVAELLFNQMPARDIISWTTMINC 217
Query: 275 LERAGRLEQA-----EEVASGI-PSQITNVVV 300
+ R +A E GI P ++T V
Sbjct: 218 YSQNKRFREALGVFNEMAKHGISPDEVTMATV 249
>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 620
Score = 168 bits (426), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 102/311 (32%), Positives = 162/311 (52%), Gaps = 37/311 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+++T+ L++ C LS TQ+HA +K+G+++ VY +L + Y G K + LF
Sbjct: 114 NAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLF 173
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
D +PE + V+WN +I G VK WT +I GY + + + EAL
Sbjct: 174 DRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQ 233
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M + EP +++ L A + G + + IH Y K D + LID
Sbjct: 234 LFHEMQNSD-VEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIR-MDSVLGCVLIDM 291
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-- 239
YAKCG + A ++F++ + +K++ +WT +ISG+A HG G+EA+ F MQK+G+KPN
Sbjct: 292 YAKCGEMEEALEVFKN--IKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVI 349
Query: 240 ---------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+ EEG F M + + P I+HYGC++D+L RAG L++A+
Sbjct: 350 TFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQE 409
Query: 291 IPSQITNVVVW 301
+P + N V+W
Sbjct: 410 MPLK-PNAVIW 419
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 119/301 (39%), Gaps = 60/301 (19%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSL---GFLKDSSKLFDELPERNLVTWNVIITGLV 101
Q+HA K G Y T +S FL + +FD + WN++I G
Sbjct: 32 QIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRG-- 89
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
+S + +L L++RM C + T ++L A IH
Sbjct: 90 --------FSCSDEPERSLLLYQRM-LCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQ 140
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF------EDTS---------------- 199
K G+ D++ N LI++YA G A LF +D S
Sbjct: 141 ITKLGYEN-DVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDI 199
Query: 200 -------VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---------SWR 243
+ KN +SWTT+ISG+ M KEA++ F MQ ++P+ +
Sbjct: 200 ALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQ 259
Query: 244 IG--EEGLKFFDKMVEECEVLPDIKHYGC-LIDILERAGRLEQAEEVASGIPSQITNVVV 300
+G E+G K+ + + + D GC LID+ + G +E+A EV I + +V
Sbjct: 260 LGALEQG-KWIHSYLNKTRIRMD-SVLGCVLIDMYAKCGEMEEALEVFKNIKKK--SVQA 315
Query: 301 W 301
W
Sbjct: 316 W 316
>gi|449477559|ref|XP_004155057.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 164/316 (51%), Gaps = 37/316 (11%)
Query: 5 KQLQQIYI----HSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
K L +YI H S LP DS T+ +++ L +G +H + ++GF VY
Sbjct: 69 KHLNSLYIFALMHKFSILP---DSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVY 125
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
+TAL +Y + + D+S+LFDE+PERN VTWN +IT GY+ + +A+
Sbjct: 126 TSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALIT----------GYTHNRKFVKAI 175
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHG--YGEKRGFNAFDIHVSNCL 178
FR M A + +PSE T++ VL A G + IH Y + N F V L
Sbjct: 176 DAFRGMLA-DGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVF---VGTAL 231
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
ID YAKCG ++ K+FE+ + KN+ +W +ISG+AM+G G A++ F RM KP
Sbjct: 232 IDMYAKCGAVYEVEKVFEE--IREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKP 289
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ +G EG F M ++ + P I+HYGC++D+L RAG LE+A E+
Sbjct: 290 DEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALEL 349
Query: 288 ASGIPSQITNVVVWRT 303
+ + + ++WR
Sbjct: 350 IQSMSIE-PDPIIWRA 364
>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Cucumis sativus]
Length = 609
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/303 (33%), Positives = 169/303 (55%), Gaps = 28/303 (9%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
+H+ S + P D+ T+ FL + L +LG +H+V + GF S +V +L MY
Sbjct: 126 MHAASSILP--DTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSV 183
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY 131
LG L + ++F+ + R+ V WN +I+G++ NEAL L+R M + E
Sbjct: 184 LGSLXSAYQVFEIMSYRDRVAWN----------SVINGFALNGMPNEALTLYREMGS-EG 232
Query: 132 TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191
EP T++++L A + G + + +H Y K G + H SN L+D Y+KCG A
Sbjct: 233 VEPDGFTMVSLLSACVELGALALGERVHMYMVKVGL-VQNQHASNALLDLYSKCGNFRDA 291
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG------ 245
K+F++ ++ +++VSWT++I G A++G+G EA++ F +++ GLKP+ +G
Sbjct: 292 QKVFDE--MEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACS 349
Query: 246 -----EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
+EG +F +M EE +LP I+H+GC++D+L RAG++ A + +P N V+
Sbjct: 350 HCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVP-PNAVI 408
Query: 301 WRT 303
WRT
Sbjct: 409 WRT 411
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 37/225 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT L+ CV L LG ++H KVG + + + AL D+Y G +D+ K+F
Sbjct: 236 DGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVF 295
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ ER++V+W +I GL ++G NEAL LF + + +PSEIT + V
Sbjct: 296 DEMEERSVVSWTSLIVGLA-----VNGL-----GNEALKLFGELER-QGLKPSEITFVGV 344
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAF-----------DIHVSNCLIDTYAKCGCIFSA 191
L A +C ++ GFN F I C++D + G + A
Sbjct: 345 LYA------CSHCGML-----DEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDA 393
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQK 233
+ V N V W T++ +HG +G+ A +R+++
Sbjct: 394 YDYIRNMPVP-PNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQ 437
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 108/224 (48%), Gaps = 30/224 (13%)
Query: 28 SFLIRTCVTL-----SYPNLGTQLHAVFSKVG-------FQSHVYVNTALGDMYVSLGFL 75
SF++R C++L S + Q+HA + G F H+ AL + + F
Sbjct: 31 SFILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIF--ALVSLSAPMSF- 87
Query: 76 KDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS 135
++++F+++ N+ TWN +I G++ + A+ LF +M A P
Sbjct: 88 --AAQIFNQIQAPNIFTWNTMIR----------GFAESENPSPAVELFSQMHAASSILPD 135
Query: 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
T + A+ K +V + IH + GF++ V N L+ Y+ G + SA ++F
Sbjct: 136 THTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRF-VQNSLVHMYSVLGSLXSAYQVF 194
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
E S ++ V+W ++I+GFA++GM EA+ + M G++P+
Sbjct: 195 EIMSY--RDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPD 236
>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 609
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/303 (32%), Positives = 169/303 (55%), Gaps = 28/303 (9%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
+H+ S + P D+ T+ FL + L +LG +H+V + GF S +V +L MY
Sbjct: 126 MHAASSILP--DTHTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSV 183
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY 131
GF + + ++F+ + R+ V WN +I+G++ NEAL L+R M + E
Sbjct: 184 FGFAESAYQVFEIMSYRDRVAWN----------SVINGFALNGMPNEALTLYREMGS-EG 232
Query: 132 TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191
EP T++++L A + G + + +H Y K G + H SN L+D Y+KCG A
Sbjct: 233 VEPDGFTMVSLLSACVELGALALGERVHMYMVKVGL-VQNQHASNALLDLYSKCGNFRDA 291
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG------ 245
K+F++ ++ +++VSWT++I G A++G+G EA++ F +++ GLKP+ +G
Sbjct: 292 QKVFDE--MEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACS 349
Query: 246 -----EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
+EG +F +M EE +LP I+H+GC++D+L RAG++ A + +P N V+
Sbjct: 350 HCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVP-PNAVI 408
Query: 301 WRT 303
WRT
Sbjct: 409 WRT 411
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 103/225 (45%), Gaps = 37/225 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT L+ CV L LG ++H KVG + + + AL D+Y G +D+ K+F
Sbjct: 236 DGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVF 295
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ ER++V+W +I GL ++G NEAL LF + + +PSEIT + V
Sbjct: 296 DEMEERSVVSWTSLIVGLA-----VNGL-----GNEALKLFGELER-QGLKPSEITFVGV 344
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAF-----------DIHVSNCLIDTYAKCGCIFSA 191
L A +C ++ GFN F I C++D + G + A
Sbjct: 345 LYA------CSHCGML-----DEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGKVGDA 393
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQK 233
+ V N V W T++ +HG +G+ A +R+++
Sbjct: 394 YDYIRNMPVP-PNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQ 437
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 107/224 (47%), Gaps = 30/224 (13%)
Query: 28 SFLIRTCVTL-----SYPNLGTQLHAVFSKVG-------FQSHVYVNTALGDMYVSLGFL 75
SF++R C++L S + Q+HA + G F H+ AL + + F
Sbjct: 31 SFILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIF--ALVSLSAPMSF- 87
Query: 76 KDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS 135
++++F+++ N+ TWN +I G++ + A+ LF +M A P
Sbjct: 88 --AAQIFNQIQAPNIFTWNTMIR----------GFAESENPSPAVELFSQMHAASSILPD 135
Query: 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
T + A+ K +V + IH + GF++ V N L+ Y+ G SA ++F
Sbjct: 136 THTFPFLFKAVAKLMDVSLGEGIHSVVVRNGFDSLRF-VQNSLVHMYSVFGFAESAYQVF 194
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
E S ++ V+W ++I+GFA++GM EA+ + M G++P+
Sbjct: 195 EIMSY--RDRVAWNSVINGFALNGMPNEALTLYREMGSEGVEPD 236
>gi|297844244|ref|XP_002890003.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297335845|gb|EFH66262.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 471
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 145/267 (54%), Gaps = 35/267 (13%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTGII 107
Y+ +G + ++ LFD++P R++++WN ++ G + W G+I
Sbjct: 97 YIEMGNMMEARSLFDQMPCRDVMSWNTVLEGYANIGDMEACERVFDEMLERNVFSWNGLI 156
Query: 108 DGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF 167
GY++ R +E L F+RM P++ T+ VL A K G + +H YGE G+
Sbjct: 157 KGYAQNGRVSEVLGSFKRMVDEGSVFPNDATLTLVLSACAKLGAFDFGKRVHKYGENLGY 216
Query: 168 NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVEN 227
N D++V N LID Y KCG I A ++F+ + R++L+SW T+I+G A HG G EA++
Sbjct: 217 NKVDVNVKNALIDMYGKCGAIEIAMEVFK--GIKRRDLISWNTMINGLAAHGHGTEALDL 274
Query: 228 FERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILE 276
F M+ G+ P++ +G E+GL +F+ M + + P I+H GC++D+L
Sbjct: 275 FHEMKNCGISPDKVTFVGVLCACKHMGLVEDGLAYFNSMFTDFSITPQIEHCGCVVDLLS 334
Query: 277 RAGRLEQAEEVASGIPSQITNVVVWRT 303
RAG L QA E + +P + + V+W T
Sbjct: 335 RAGFLTQAVEFINKMPVK-ADAVIWAT 360
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 82/198 (41%), Gaps = 29/198 (14%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSSKLFDE 84
T + ++ C L + G ++H +G+ V V AL DMY G ++ + ++F
Sbjct: 187 TLTLVLSACAKLGAFDFGKRVHKYGENLGYNKVDVNVKNALIDMYGKCGAIEIAMEVFKG 246
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ R+L++WN +I GL + EAL LF M C + P ++T + VL
Sbjct: 247 IKRRDLISWNTMINGL----------AAHGHGTEALDLFHEMKNCGIS-PDKVTFVGVLC 295
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAF--------DIHVSNCLIDTYAKCGCIFSASKLFE 196
A G V + FN+ I C++D ++ G + A +
Sbjct: 296 ACKHMGLVEDGLAY--------FNSMFTDFSITPQIEHCGCVVDLLSRAGFLTQAVEFIN 347
Query: 197 DTSVDRKNLVSWTTIISG 214
V + + V W T++
Sbjct: 348 KMPV-KADAVIWATLLGA 364
>gi|449441075|ref|XP_004138309.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 562
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 108/316 (34%), Positives = 164/316 (51%), Gaps = 37/316 (11%)
Query: 5 KQLQQIYI----HSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
K L +YI H S LP DS T+ +++ L +G +H + ++GF VY
Sbjct: 69 KHLNSLYIFALMHKFSILP---DSSTFPAVLKATAQLCDTGVGKMIHGIVIQMGFICDVY 125
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
+TAL +Y + + D+S+LFDE+PERN VTWN +IT GY+ + +A+
Sbjct: 126 TSTALVHLYCTCLSISDASQLFDEMPERNAVTWNALIT----------GYTHNRKFVKAI 175
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHG--YGEKRGFNAFDIHVSNCL 178
FR M A + +PSE T++ VL A G + IH Y + N F V L
Sbjct: 176 DAFRGMLA-DGAQPSERTVVVVLSACSHLGAFNQGKWIHEFIYHNRLRLNVF---VGTAL 231
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
ID YAKCG ++ K+FE+ + KN+ +W +ISG+AM+G G A++ F RM KP
Sbjct: 232 IDMYAKCGAVYEVEKVFEE--IREKNVYTWNVLISGYAMNGQGDAALQAFSRMLMENFKP 289
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ +G EG F M ++ + P I+HYGC++D+L RAG LE+A E+
Sbjct: 290 DEVTFLGVLCACCHQGLVTEGRWQFMSMKQQFGLQPRIEHYGCMVDLLGRAGLLEEALEL 349
Query: 288 ASGIPSQITNVVVWRT 303
+ + + ++WR
Sbjct: 350 IQSMSIE-PDPIIWRA 364
>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Cucumis sativus]
Length = 642
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 108/358 (30%), Positives = 171/358 (47%), Gaps = 68/358 (18%)
Query: 9 QIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDM 68
Q+++ L DSF+++FL++ G QLH + G SH++V T L M
Sbjct: 91 QLFVEMRRKSVALPDSFSFAFLLKAAANCRALTNGLQLHCLAVGYGLDSHLFVGTTLISM 150
Query: 69 YVSLGFLKDSSKLFDEL-------------------------------PERNLVTWNVII 97
Y L + K+FDE+ P RNL +WN+++
Sbjct: 151 YAECACLVFARKVFDEMIEPNIVAWNAIVAACFRCEGVKDAEQVFRCMPIRNLTSWNIML 210
Query: 98 TGLVK---------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE 136
G K W+ +I G++ N+A A FR + E P+E
Sbjct: 211 AGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRR-EGMRPNE 269
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
+++ VL A + G +++HG+ EK GF I V+N LIDTY+KCG + A +F+
Sbjct: 270 VSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQI-ISVNNALIDTYSKCGNLDMARLVFD 328
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG----------- 245
+ + R++ VSWT +I+G AMHG G+EA+ F M++ +KP+ I
Sbjct: 329 N--MLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHAGLV 386
Query: 246 EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ G +F +MV + P I+HYGC++D+ RAG+L+QA + +P N +VWRT
Sbjct: 387 DLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPIS-PNDIVWRT 443
>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 649
Score = 168 bits (425), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 101/311 (32%), Positives = 160/311 (51%), Gaps = 37/311 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+++T+ L++ C LS TQ+HA +K+G+++ VY +L + Y + G K + LF
Sbjct: 143 NAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLF 202
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
D +P+ + V+WN +I G K WT +I GY + EAL
Sbjct: 203 DRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQ 262
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M + EP +++ L A + G + + IH Y K D + LID
Sbjct: 263 LFHEMQNSD-VEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIR-MDSVLGCVLIDM 320
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-- 239
YAKCG + A ++F++ + RK++ +WT +ISG+A HG G+EA+ F MQK+G+KPN
Sbjct: 321 YAKCGDMGEALEVFKN--IQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVI 378
Query: 240 ---------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+ EEG F M + + P I+HYGC++D+L RAG L++A+
Sbjct: 379 TFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQE 438
Query: 291 IPSQITNVVVW 301
+P + N V+W
Sbjct: 439 MPLK-PNAVIW 448
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 130/331 (39%), Gaps = 70/331 (21%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL---GFLK 76
PL Y + T S Q+HA K G Y T +S FL
Sbjct: 36 PLLSGSCYCMMPNTETRCSKQEELKQIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLP 95
Query: 77 DSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE-----Y 131
+ +FD + WN++I G +S + +L L++RM C Y
Sbjct: 96 YAQIVFDGFDRPDTFLWNLMIRG----------FSCSDEPERSLLLYQRMLCCSAPHNAY 145
Query: 132 TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191
T PS + + L A+ + + IH K G+ D++ N LI++YA G A
Sbjct: 146 TFPSLLKACSNLSALEETTQ------IHAQITKLGYEN-DVYAVNSLINSYAATGNFKLA 198
Query: 192 SKLFE-----------------------DTSVD------RKNLVSWTTIISGFAMHGMGK 222
LF+ D ++ KN +SWTT+ISG+ GM K
Sbjct: 199 HLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHK 258
Query: 223 EAVENFERMQKVGLKPNR---------SWRIG--EEGLKFFDKMVEECEVLPDIKHYGC- 270
EA++ F MQ ++P+ ++G E+G K+ + + + D GC
Sbjct: 259 EALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQG-KWIHSYLTKTRIRMD-SVLGCV 316
Query: 271 LIDILERAGRLEQAEEVASGIPSQITNVVVW 301
LID+ + G + +A EV I Q +V W
Sbjct: 317 LIDMYAKCGDMGEALEVFKNI--QRKSVQAW 345
>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1183
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 159/290 (54%), Gaps = 27/290 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +T + ++ C S + G +H+ K G S++ V AL +MY G ++++ +F
Sbjct: 671 DIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVF 730
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++P +++V+WN +I GYS+ + NEAL LF M + +P +IT+ V
Sbjct: 731 SKIPVKDIVSWNTMI----------GGYSQNSLPNEALELFLDMQ--KQFKPDDITMACV 778
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LPA + + IHG+ +RG+ + D+HV+ L+D YAKCG + A LF+ + +
Sbjct: 779 LPACAGLAALDKGREIHGHILRRGYFS-DLHVACALVDMYAKCGLLVLAQLLFD--MIPK 835
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS-----------WRIGEEGLKF 251
K+L+SWT +I+G+ MHG G EA+ F M+ G++P+ S + EG KF
Sbjct: 836 KDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKF 895
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F+ M EC V P ++HY C++D+L R G L +A + +P + + +W
Sbjct: 896 FNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIK-PDTTIW 944
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 142/302 (47%), Gaps = 54/302 (17%)
Query: 27 YSFLIRTCVTLSYPNLGT-----QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
Y+F TCV + LG ++H K+GF S+ V +L Y G ++ + L
Sbjct: 471 YTF---TCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNL 527
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FDEL E ++V+WN +I G V ++G+ S L +F +M E T+++
Sbjct: 528 FDELSEPDVVSWNSMINGCV-----VNGF-----SGNGLEIFIQMLILG-VEVDLTTLVS 576
Query: 142 VLPAIWKN-GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
VL A W N G + + +HG+G K F+ ++ SN L+D Y+KCG + A+++F +
Sbjct: 577 VLVA-WANIGNLSLGRALHGFGVKACFSE-EVVFSNTLLDMYSKCGNLNGATEVF--VKM 632
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECE 260
+VSWT+ I+ + G+ +A+ F+ MQ G++P+ + +V C
Sbjct: 633 GDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPD---------IYTVTSIVHACA 683
Query: 261 VLP------DIKHY-------------GCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
D+ Y LI++ + G +E+A V S IP + ++V W
Sbjct: 684 CSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIP--VKDIVSW 741
Query: 302 RT 303
T
Sbjct: 742 NT 743
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 102/212 (48%), Gaps = 14/212 (6%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
+Y +++ C G ++H+V G + L MYV+ G L K+FD++
Sbjct: 371 SYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKI 430
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
+ WN++++ Y+++ E+++LF++M T VL
Sbjct: 431 MNDKVFLWNLLMS----------EYAKIGNFRESVSLFKKMQKLGVVGNC-YTFTCVLKC 479
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
G+V+ C+ +HGY K GF + + V N LI Y K G + SA LF++ S ++
Sbjct: 480 FAALGKVKECKRVHGYVLKLGFGS-NTAVVNSLIAAYFKFGGVESAHNLFDELS--EPDV 536
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
VSW ++I+G ++G +E F +M +G++
Sbjct: 537 VSWNSMINGCVVNGFSGNGLEIFIQMLILGVE 568
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 14/197 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + ++ C L+ + G ++H + G+ S ++V AL DMY G L + LF
Sbjct: 771 DDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLF 830
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +P+++L++W V+I GY NEA++ F M EP E + +
Sbjct: 831 DMIPKKDLISWTVMIA----------GYGMHGFGNEAISTFNEMRIAG-IEPDESSFSVI 879
Query: 143 LPAIWKNGEVRNC-QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A +G + + + + G H + C++D A+ G + A K E +
Sbjct: 880 LNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYA-CVVDLLARMGNLSKAYKFIESMPI- 937
Query: 202 RKNLVSWTTIISGFAMH 218
+ + W ++SG +H
Sbjct: 938 KPDTTIWGVLLSGCRIH 954
>gi|224075377|ref|XP_002304609.1| predicted protein [Populus trichocarpa]
gi|222842041|gb|EEE79588.1| predicted protein [Populus trichocarpa]
Length = 431
Score = 168 bits (425), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 105/327 (32%), Positives = 170/327 (51%), Gaps = 41/327 (12%)
Query: 9 QIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDM 68
Q+Y H H P FD+F+ F +++C L + LH+ K+GF +HVYV+T L
Sbjct: 39 QLYTHMHRQSIP-FDTFSILFTLKSCTHLKNLTIIHHLHSHIIKLGFNTHVYVSTCLLHA 97
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK---------------------WTGII 107
Y + F + LFDE+P+RN+VTWN +ITG + W+ +I
Sbjct: 98 YAVMSF-DQACDLFDEMPQRNIVTWNTMITGYSRSGSINKARSLFEAMPVRDAASWSAMI 156
Query: 108 DGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVR--NCQLIHGYGEKR 165
Y ++ L+ F+ M A E +P ++T+ +VL G + + +HG+ K
Sbjct: 157 TCYINNGFRDQGLSFFQEMMANENPKPDQVTVGSVLSGCAHMGSLGLLAGKSVHGFVVKN 216
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225
G+ ++ + L+D YAKCG +A +F + +N+ +WT +I G A HG +E +
Sbjct: 217 GWE-LNVDIGTLLVDMYAKCGFFKNAVWVF--VLMQERNVSTWTALICGAAQHGFCQEVL 273
Query: 226 ENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDI 274
F+ MQ+ G++PN G EEG K+F KM++E + P I+HYGC++D+
Sbjct: 274 SLFKMMQEAGVRPNEMTFTGILNACARKGLIEEGRKYF-KMIKETGLEPRIQHYGCMVDM 332
Query: 275 LERAGRLEQAEEVASGIPSQITNVVVW 301
+AG LE+A EV + + N+V+W
Sbjct: 333 FGKAGLLEEAYEVIKEMEFE-PNIVIW 358
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 18/212 (8%)
Query: 9 QIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNL--GTQLHAVFSKVGFQSHVYVNTALG 66
Q + + +P P D T ++ C + L G +H K G++ +V + T L
Sbjct: 173 QEMMANENPKP---DQVTVGSVLSGCAHMGSLGLLAGKSVHGFVVKNGWELNVDIGTLLV 229
Query: 67 DMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM 126
DMY GF K++ +F + ERN+ TW +I G + G+ + E L+LF+ M
Sbjct: 230 DMYAKCGFFKNAVWVFVLMQERNVSTWTALICGAAQ-----HGFCQ-----EVLSLFKMM 279
Query: 127 AACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG 186
P+E+T +L A + G + + ++ G H C++D + K G
Sbjct: 280 QEAG-VRPNEMTFTGILNACARKGLIEEGRKYFKMIKETGLEPRIQHYG-CMVDMFGKAG 337
Query: 187 CIFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218
+ A ++ ++ + N+V W + +S MH
Sbjct: 338 LLEEAYEVIKEMEFE-PNIVIWGSFLSACKMH 368
>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 640
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 111/372 (29%), Positives = 179/372 (48%), Gaps = 71/372 (19%)
Query: 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY----- 69
H P+ DS++ S +I+ C L P G +LH K+G S ++V TAL +MY
Sbjct: 97 HQECIPI-DSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGD 155
Query: 70 --------------------------VSLGFLKDSSKLFDELPERNLVTWNVIITG---- 99
V +G + + LFD +PER+LV+WN +I G
Sbjct: 156 IEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASL 215
Query: 100 -----------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
L+ W+ +I Y++ +SNEAL LF M P ++T+++V
Sbjct: 216 GDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVL-PDKVTMVSV 274
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + ++IH E+ D+ + L+D YAKCG I ++ ++F ++
Sbjct: 275 LSACGDVGALGMGKMIHECIERNRIE-IDLKLGTSLVDMYAKCGDIDNSLRVF--NGMNN 331
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+++ +W+ +I G A HG G+ A+++F +M +KPN IG +EG +
Sbjct: 332 RDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDEGWTY 391
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT--GFLRLL 309
F M + +V P I+HYGC++DIL RAGRL++A E+ +P + +VWR G R+
Sbjct: 392 FTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFA-PDAIVWRALLGACRIY 450
Query: 310 INSYFFSPITLN 321
N T+N
Sbjct: 451 KNVEIAEEATVN 462
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 70/337 (20%), Positives = 121/337 (35%), Gaps = 86/337 (25%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD---SSKLFDELPERNLVTWNVIITGLV 101
Q+HA+ K + +V L + D + +FDE+P + WN +I
Sbjct: 21 QIHALIIKTSLDGNNFVLAKLLRRLFACSSANDLLYARSVFDEIPSPDTFIWNTMIR--- 77
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
Y E+++LF +M E ++ V+ A + + N Q +H
Sbjct: 78 -------AYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQ 130
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS---------------------- 199
K G + D+ V LI+ YAK G I A + ++ +
Sbjct: 131 VLKIGLGS-DLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINL 189
Query: 200 ----VDR---KNLVSWTTIISGFAMHG-------------------------------MG 221
DR ++LVSW T+I G A G
Sbjct: 190 AHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQS 249
Query: 222 KEAVENFERMQKVGLKPNRSWRI------GEEGLKFFDKMVEEC----EVLPDIKHYGCL 271
EA+ F MQ + P++ + G+ G KM+ EC + D+K L
Sbjct: 250 NEALRLFHEMQLANVLPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSL 309
Query: 272 IDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRL 308
+D+ + G ++ + V +G+ ++ +V W + L
Sbjct: 310 VDMYAKCGDIDNSLRVFNGMNNR--DVFAWSAMIMGL 344
>gi|225468727|ref|XP_002271484.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 558
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 160/292 (54%), Gaps = 28/292 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ F+++ C L G LH++ K+GF S VYV L Y GFL + K+F
Sbjct: 86 DHFTFPFVLKACARL---QTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKVF 142
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+PER+LV+W+ +I K +G+ EALALF+RM +P E+ +L+V
Sbjct: 143 EEMPERDLVSWSSMIACFAK-----NGFGY-----EALALFQRMQLVGTVKPDEVIVLSV 192
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ AI G++ + I G+ + G F + + L+D +++CGCI + ++F++ +
Sbjct: 193 VSAISILGDLELGKWIRGFISRNGLE-FTVSLGTALVDMFSRCGCIEESMRVFDE--MGE 249
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+N+++WT +I+G A+HG EA+ F M+ G +P+ G EG
Sbjct: 250 RNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHV 309
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ + E + P +HYGC++D+L RAG L +A + G+P + N ++WRT
Sbjct: 310 FESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIR-PNSIIWRT 360
>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
Length = 924
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 159/306 (51%), Gaps = 27/306 (8%)
Query: 5 KQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTA 64
K L ++ ++S P D FT S L+ C L G ++H + G ++ +V T+
Sbjct: 434 KALHLLFQMTYSGQQP--DWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTS 491
Query: 65 LGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFR 124
L Y+ G + LFD + ++NLV+WN +I+ GYS+ E+LALFR
Sbjct: 492 LLSHYIHCGKASSARVLFDRMKDKNLVSWNAMIS----------GYSQNGLPYESLALFR 541
Query: 125 RMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK 184
+ + E + EI I++V A + +R + HGY K D V +ID YAK
Sbjct: 542 K-SLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLK-ALQTEDAFVGCSIIDMYAK 599
Query: 185 CGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI 244
GCI + K+F+ + KN+ SW II +HG GKEA+E +ERM+KVG P+R I
Sbjct: 600 SGCIKESRKVFD--GLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYI 657
Query: 245 G-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPS 293
G EEGLK+F +M + P ++HY CLID+L RAGRL+ A + + +P
Sbjct: 658 GILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPE 717
Query: 294 QITNVV 299
+ N +
Sbjct: 718 EADNRI 723
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 111/219 (50%), Gaps = 15/219 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FT+ +I+ C + LG +H + K+G V+V AL MY G + ++ K+F
Sbjct: 145 DNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVF 204
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +PE NLV+WN +I + +G+SR ++ L M E P +T++ +
Sbjct: 205 DFMPETNLVSWNSMICAFSE-----NGFSR-----DSFDLLMEMLGEEGLLPDVVTVVTI 254
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LP GEV IHG K G + ++ V+N ++ Y+KCG + A F +
Sbjct: 255 LPVCAGEGEVDIGMGIHGLAVKLGLSE-EVMVNNAMVYMYSKCGYLNEAQMSF--VKNNN 311
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVG--LKPN 239
KN+VSW T+IS F++ G EA + MQ G +K N
Sbjct: 312 KNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKAN 350
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 107/220 (48%), Gaps = 15/220 (6%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D T ++ C ++G +H + K+G V VN A+ MY G+L ++
Sbjct: 245 LPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQM 304
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA-ACEYTEPSEITI 139
F + +N+V+WN +I+ +S NEA L + M E + +E+TI
Sbjct: 305 SFVKNNNKNVVSWNTMISA----------FSLEGDVNEAFNLLQEMQIQGEEMKANEVTI 354
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
L VLPA ++R+ + +HGY + F + +SN I YAKCG + SA K+F
Sbjct: 355 LNVLPACLDKLQLRSLKELHGYSFRHCFQ--HVELSNAFILAYAKCGALNSAEKVFH--G 410
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+ K + SW +I G A +G ++A+ +M G +P+
Sbjct: 411 IGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPD 450
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 106/244 (43%), Gaps = 29/244 (11%)
Query: 10 IYIHSHS---PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYV-NTAL 65
I I SHS L L++ C G +LH S + YV NT L
Sbjct: 26 ILIQSHSQNAAFISLQAKEAIGLLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRL 85
Query: 66 GDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRR 125
MY G DS +FD + +NL+ WN +++ GY+R + + +F
Sbjct: 86 IKMYAMCGSPLDSRLVFDNMETKNLIQWNALVS----------GYTRNGLYGDVVKVFMD 135
Query: 126 MAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC 185
+ + +P T +V+ A +VR ++IHG K G D+ V N L+ Y KC
Sbjct: 136 LVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGL-VLDVFVGNALVGMYGKC 194
Query: 186 GCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG 245
G + A K+F+ + NLVSW ++I F+ +G +++ + M +G
Sbjct: 195 GAVDEAMKVFD--FMPETNLVSWNSMICAFSENGFSRDSFDLLMEM------------LG 240
Query: 246 EEGL 249
EEGL
Sbjct: 241 EEGL 244
>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
Length = 629
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 100/311 (32%), Positives = 166/311 (53%), Gaps = 36/311 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT+ +++ C L+ G QLH K+G S +V + L +YV G +KD+ LF
Sbjct: 122 NKFTFPCVLKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLF 181
Query: 83 DELP-ERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEAL 120
+ E N+V WNV+I G V+ W +I G ++ EA+
Sbjct: 182 YQTRLEGNVVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAI 241
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
+F M + P+ +T+++VLPA+ + G + + +H + EK D+ + + LID
Sbjct: 242 EMFHDMQLGD-VPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDV-LGSALID 299
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
Y+KCG I A ++FE ++KN ++W+ II G AMHG ++A+++F RMQ+ G+ P+
Sbjct: 300 MYSKCGSIDKAVQVFEGIR-NKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSD 358
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
IG EEG + MV +LP I+HYGC++D+L RAG LE+AE++
Sbjct: 359 VVYIGVLSACSHAGLVEEGRSIYYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLIL 418
Query: 290 GIPSQITNVVV 300
+P + +V++
Sbjct: 419 NMPVKPDDVIL 429
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 128/301 (42%), Gaps = 51/301 (16%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGF---LKDSSKLFDELPERNLVTWNVIITGLV 101
Q+HA F K G Q H + A +++L +K + K F ++ N +WN II L
Sbjct: 33 QIHAHFIKTG-QIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCFSWNTIIRALA 91
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
+ S EAL F M EP++ T VL A K + + +HG+
Sbjct: 92 DSDDDDLFHVN---SLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEEGKQLHGF 148
Query: 162 GEKRGF--NAF----------------DIHVS-------------NCLIDTYAKCGCIFS 190
K G + F D HV N +ID Y + G + +
Sbjct: 149 VVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLRA 208
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN---------RS 241
+ +LF+ S+ K++VSW +ISG A +G KEA+E F MQ + PN
Sbjct: 209 SRELFD--SMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVPPNYVTLVSVLPAV 266
Query: 242 WRIGEEGL-KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
R+G L K+ E+ E+ D LID+ + G +++A +V GI ++ N +
Sbjct: 267 SRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNK-KNPIT 325
Query: 301 W 301
W
Sbjct: 326 W 326
>gi|356565103|ref|XP_003550784.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g47530-like [Glycine max]
Length = 515
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 100/296 (33%), Positives = 164/296 (55%), Gaps = 29/296 (9%)
Query: 23 DSFTYSFLIRTCV--TLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
D + SF++++C+ Y G Q+H K G Q + TA+ D+Y D+ K
Sbjct: 36 DPLSSSFVVKSCIRLXGLYLLGGVQVHCNIFKYGHQWDTLLLTAVMDLYSXCQRGGDACK 95
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY-TEPSEITI 139
+FDE+P R+ V WNV+I+ + R NR+ +AL+LF + Y EP ++T
Sbjct: 96 VFDEMPPRDTVAWNVMISCCI----------RNNRTRDALSLFDVLQNSSYKCEPDDVTC 145
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
L +L A + + IHGY + G+ +++SN LI Y++CGC+ A ++F+ T
Sbjct: 146 LLLLQACAHLYALEFGERIHGYMMEHGYGGA-LNLSNALISMYSRCGCLDKAXEVFKGTG 204
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
KN+VSW+ +ISG AM+G G+EA+E+FE M ++G++P+ G +EG
Sbjct: 205 --NKNVVSWSAMISGLAMNGYGREAIESFEEMLRIGIRPDDQTLTGVLSACSYSGMVDEG 262
Query: 249 -LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ FFD+M E V P++ HYGC++D+L AG L++A ++ + + + WRT
Sbjct: 263 MMSFFDRMSREFGVTPNVHHYGCMVDLLGHAGLLDKAXQLIMSMVEK-PDSTTWRT 317
>gi|356547105|ref|XP_003541958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18970-like [Glycine max]
Length = 477
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 163/303 (53%), Gaps = 34/303 (11%)
Query: 22 FDSFTYSFLIRTCV---TLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
FD +TY+F++ C + S +G QLHA K GF+S++ V T Y S + +
Sbjct: 103 FDEYTYNFVLGACARSPSASTLWVGRQLHARIVKHGFESNILVPTTKIYFYASNKDIISA 162
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNE-----ALALFRRM-AACEYT 132
++FDE+P R+ VTWN +IT GYS N+ AL+LF M
Sbjct: 163 RRVFDEMPRRSTVTWNAMIT----------GYSSQKEGNKKYALNALSLFIDMLVDVSVI 212
Query: 133 EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNA-FDIHVSNCLIDTYAKCGCIFSA 191
+P+ TI++VL A+ + G + IHG+ EK D+ + L+D Y+KCGC+ SA
Sbjct: 213 KPTGTTIVSVLSAVSQIGMLETGACIHGFAEKTVCTPEDDVFIGTGLVDMYSKCGCLDSA 272
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS---------- 241
+F +++KN+++WT + + A+HG GK+A+E +M G+KPN +
Sbjct: 273 LSVF--WRMNQKNILTWTAMTTSLAIHGKGKQALEVLYKMGAYGVKPNEATFTSFLSACC 330
Query: 242 -WRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
+ EEGL F +M ++P IKHYGC++D+L RAG LE+A + +P + V+
Sbjct: 331 HGGLVEEGLILFHEMKRTFGMMPQIKHYGCIVDLLGRAGNLEEAYDFIMRMPIN-PDAVI 389
Query: 301 WRT 303
WR+
Sbjct: 390 WRS 392
>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 785
Score = 167 bits (424), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 161/290 (55%), Gaps = 27/290 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D + + ++ C + + G ++H K S++ V+ AL +MY G +++++ +F
Sbjct: 359 DIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIF 418
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+LP +N+V+WN +I GYS+ + NEAL LF M + +P ++T+ V
Sbjct: 419 SQLPVKNIVSWNTMI----------GGYSQNSLPNEALQLFLDMQ--KQLKPDDVTMACV 466
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LPA + + IHG+ ++G+ + D+HV+ L+D Y KCG + A +LF+ + +
Sbjct: 467 LPACAGLAALEKGREIHGHILRKGYFS-DLHVACALVDMYVKCGLLVLAQQLFD--MIPK 523
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS-----------WRIGEEGLKF 251
K+++ WT +I+G+ MHG GKEA+ FE+M+ G++P S + +EG K
Sbjct: 524 KDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKL 583
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
FD M EC + P ++HY C++D+L R+G L +A + +P + + +W
Sbjct: 584 FDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIK-PDAAIW 632
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 142/295 (48%), Gaps = 34/295 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DS+T++ +++ + ++H K+GF S+ V +L Y G ++ + LF
Sbjct: 157 DSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILF 216
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DEL +R++V+WN +I+G ++G+SR L F +M + T++ V
Sbjct: 217 DELSDRDVVSWNSMISGCT-----MNGFSR-----NGLEFFIQMLNLG-VDVDSATLVNV 265
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + + +H YG K GF+ + +N L+D Y+KCG + A+++F +
Sbjct: 266 LVACANVGNLTLGRALHAYGVKAGFSG-GVMFNNTLLDMYSKCGNLNGANEVF--VKMGE 322
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN--------------RSWRIGEEG 248
+VSWT+II+ G+ EA+ F+ MQ GL+P+ S G E
Sbjct: 323 TTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGRE- 381
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+++ + ++ L+++ + G +E+A + S +P + N+V W T
Sbjct: 382 ---VHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLP--VKNIVSWNT 431
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 108/217 (49%), Gaps = 15/217 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DS T ++ C + LG LHA K GF V N L DMY G L ++++F
Sbjct: 258 DSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVF 317
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++ E +V+ WT II + R EA+ LF M + + P + +V
Sbjct: 318 VKMGETTIVS----------WTSIIAAHVREGLHYEAIGLFDEMQS-KGLRPDIYAVTSV 366
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A + + + +H + +K + ++ VSN L++ YAKCG + A+ +F V
Sbjct: 367 VHACACSNSLDKGREVHNHIKKNNMGS-NLPVSNALMNMYAKCGSMEEANLIFSQLPV-- 423
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
KN+VSW T+I G++ + + EA++ F MQK LKP+
Sbjct: 424 KNIVSWNTMIGGYSQNSLPNEALQLFLDMQK-QLKPD 459
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/211 (29%), Positives = 106/211 (50%), Gaps = 14/211 (6%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
TY +++ C L G ++H++ S G + L MYV+ G L ++FD +
Sbjct: 59 TYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGI 118
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
+ WN++++ Y+++ E++ LF +M S T VL
Sbjct: 119 LNDKIFLWNLLMS----------EYAKIGNYRESVGLFEKMQELGIRGDS-YTFTCVLKG 167
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
+ +VR C+ +HGY K GF +++ V N LI Y KCG + SA LF++ S DR ++
Sbjct: 168 FAASAKVRECKRVHGYVLKLGFGSYNA-VVNSLIAAYFKCGEVESARILFDELS-DR-DV 224
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
VSW ++ISG M+G + +E F +M +G+
Sbjct: 225 VSWNSMISGCTMNGFSRNGLEFFIQMLNLGV 255
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 95/221 (42%), Gaps = 36/221 (16%)
Query: 9 QIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDM 68
Q+++ L P D T + ++ C L+ G ++H + G+ S ++V AL DM
Sbjct: 447 QLFLDMQKQLKP--DDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACALVDM 504
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
YV G L + +LFD +P+++++ W V+I GY EA++ F +M
Sbjct: 505 YVKCGLLVLAQQLFDMIPKKDMILWTVMIA----------GYGMHGFGKEAISTFEKMRV 554
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN-----------C 177
EP E + ++L A +G + K G+ FD S C
Sbjct: 555 AG-IEPEESSFTSILYACTHSGLL-----------KEGWKLFDSMKSECNIEPKLEHYAC 602
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218
++D + G + A K E + + + W ++SG +H
Sbjct: 603 MVDLLIRSGNLSRAYKFIETMPI-KPDAAIWGALLSGCRIH 642
>gi|413946997|gb|AFW79646.1| hypothetical protein ZEAMMB73_771020 [Zea mays]
Length = 505
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 93/277 (33%), Positives = 156/277 (56%), Gaps = 37/277 (13%)
Query: 57 SHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK-------------- 102
S +V+++L +Y + G + D+ +FDE+ R++V WNV+I G VK
Sbjct: 111 SDAHVSSSLVQLYCTCGHVADARSVFDEMAVRDVVAWNVMIAGYVKAGDQAHARELFDAM 170
Query: 103 -------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNC 155
WT +I GY++M R +A+ +FRRM E E + +L+VL A G V
Sbjct: 171 PERNVVSWTTVIGGYAQMKRPEKAVEVFRRMQV-EGIEADGVALLSVLAACGDLGAVDLG 229
Query: 156 QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGF 215
+ +H + +RG +I + N +ID Y KCGCI A ++FE ++ K++V+WTT+I+GF
Sbjct: 230 EWVHRFVVRRGL-CQEIPLMNSIIDMYMKCGCIEKAVEVFE--GMEEKSVVTWTTLIAGF 286
Query: 216 AMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKFFDKMVEECEVLPD 264
A+HG+G +AVE F RM++ + PN + + G +F+ MV + + P
Sbjct: 287 ALHGLGLQAVEMFCRMERENMAPNAVTFLAILSACSHVGLTDLGRWYFNIMVSQYRIKPR 346
Query: 265 IKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
++HYGC++D+L RAG L++A+++ +P + N +W
Sbjct: 347 VEHYGCMVDLLGRAGCLKEAQDLVKNMPLK-ANAAIW 382
>gi|297846398|ref|XP_002891080.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336922|gb|EFH67339.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 562
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 167/294 (56%), Gaps = 29/294 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ T SF ++ C + Q+H S+ GF + + T L D Y G L + KLF
Sbjct: 107 DALTCSFTLKACARALCSSAMVQIHCQISRRGFSADALLCTTLLDAYSKNGDLISALKLF 166
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ R++ +WN +I GLV NR++EAL L++RM E SE+T++A
Sbjct: 167 DEMSVRDVASWNALIAGLVAG----------NRASEALELYKRMEM-EGIRRSEVTVVAA 215
Query: 143 LPAIWKNGEVRNCQ-LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G+V+ + ++HGY + + ++ VSN +ID Y+KCG + A ++FE +
Sbjct: 216 LGACSHLGDVKEGEKILHGYIKDEKLD-HNVIVSNAVIDMYSKCGFVDKAFQVFEQFT-G 273
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLK 250
+K++V+W T+I+GF++HG A+E FE+++ G+KP+ R + E G+
Sbjct: 274 KKSVVTWNTMITGFSVHGEAHRALEIFEKLEHNGIKPDDVSYLAALTACRHTGLVEYGIS 333
Query: 251 FFDKMVEECE-VLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ M C V P++KHYGC++D+L RAGRL +A ++ + S + + V+W++
Sbjct: 334 IFNNMA--CNGVEPNMKHYGCVVDLLSRAGRLREAHDIICSM-SMVPDPVLWQS 384
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 132/291 (45%), Gaps = 34/291 (11%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVS-LGFLKDSSKLFDELPE 87
+I+ CVT S QL + F G FQS + L +S G L + K+F +P+
Sbjct: 9 MIQNCVTFSQIK---QLQSHFLTAGHFQSSFLRSRLLERCAISPFGDLSFAVKIFRHIPK 65
Query: 88 RNLVTWNVIITGLVKWTG---IIDGYSRMNRSNEALALFRRMA-ACEYTEPSEITILAVL 143
WN II G + Y M + + + AL R A C + T+ A
Sbjct: 66 PLTNDWNAIIRGFAGSSHPSLAFSWYRSMLQRSSSSALCRVDALTCSF------TLKACA 119
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
A+ + V+ IH +RGF+A D + L+D Y+K G + SA KLF++ SV +
Sbjct: 120 RALCSSAMVQ----IHCQISRRGFSA-DALLCTTLLDAYSKNGDLISALKLFDEMSV--R 172
Query: 204 NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFF 252
++ SW +I+G EA+E ++RM+ G++ + + +EG K
Sbjct: 173 DVASWNALIAGLVAGNRASEALELYKRMEMEGIRRSEVTVVAALGACSHLGDVKEGEKIL 232
Query: 253 DKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+++ ++ ++ +ID+ + G +++A +V + +VV W T
Sbjct: 233 HGYIKDEKLDHNVIVSNAVIDMYSKCGFVDKAFQVFEQFTGK-KSVVTWNT 282
>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 902
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 168/310 (54%), Gaps = 34/310 (10%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
VY+++QQ + + P + TY+ ++ C + + G ++H + G + +V
Sbjct: 416 VYQEMQQ------AGVEP--NRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVG 467
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
L +MY G +KD+ ++FD + +R++V +N +I GY+ N EAL L
Sbjct: 468 NTLVNMYSMCGSVKDARQVFDRMIQRDIVAYN----------AMIGGYAAHNLGKEALKL 517
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
F R+ E +P ++T + +L A +G + + IH K GF + D V N L+ TY
Sbjct: 518 FDRLQE-EGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFS-DTSVGNALVSTY 575
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN--- 239
AKCG AS +FE + ++N++SW II G A HG G++A++ FERM+ G+KP+
Sbjct: 576 AKCGSFSDASIVFEKMT--KRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVT 633
Query: 240 --------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
+ EEG ++F M ++ ++P I+HYGC++D+L RAG+L++AE + +
Sbjct: 634 FVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTM 693
Query: 292 PSQITNVVVW 301
P Q N +W
Sbjct: 694 PFQ-ANTRIW 702
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 129/238 (54%), Gaps = 22/238 (9%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
VY Q+Q+ +P + TY L+ CV + + G ++H+ +K GF S + V
Sbjct: 315 VYNQMQR-----EGVMP---NKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQ 366
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
AL MY G +KD+ +FD++ +++++W +I GL K G+ EAL +
Sbjct: 367 NALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAK-----SGF-----GAEALTV 416
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
++ M EP+ +T ++L A + + IH + G A D HV N L++ Y
Sbjct: 417 YQEMQQAG-VEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGL-ATDAHVGNTLVNMY 474
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+ CG + A ++F+ + ++++V++ +I G+A H +GKEA++ F+R+Q+ GLKP++
Sbjct: 475 SMCGSVKDARQVFD--RMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDK 530
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 104/201 (51%), Gaps = 20/201 (9%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G +H+ G +S V TAL MY G KD ++F++L R+L+ WN +I GL +
Sbjct: 246 GKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAE 305
Query: 103 ---WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
W + Y++M R E P++IT + +L A + + + IH
Sbjct: 306 GGYWEEASEVYNQMQR--------------EGVMPNKITYVILLNACVNSAALHWGKEIH 351
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
K GF + DI V N LI Y++CG I A +F+ + RK+++SWT +I G A G
Sbjct: 352 SRVAKAGFTS-DIGVQNALISMYSRCGSIKDARLVFD--KMVRKDVISWTAMIGGLAKSG 408
Query: 220 MGKEAVENFERMQKVGLKPNR 240
G EA+ ++ MQ+ G++PNR
Sbjct: 409 FGAEALTVYQEMQQAGVEPNR 429
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 117/220 (53%), Gaps = 16/220 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S Y +++ C+ + G Q+H + Y AL +MY+ G ++++ +++
Sbjct: 22 NSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVW 81
Query: 83 DELP--ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+L ER + +WN ++ G +++ G I+ +AL L R+M P TI+
Sbjct: 82 KKLSYMERTVHSWNAMVVGYIQY-GYIE---------KALKLLRQMQQ-HGLAPDRTTIM 130
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+ L + G + + IH + G FD+ V+NC+++ YAKCG I A ++F+ +
Sbjct: 131 SFLSSCKSPGALEWGREIHFQAMQAGL-LFDVKVANCILNMYAKCGSIEEAREVFD--KM 187
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
++K++VSWT I G+A G + A E F++M++ G+ PNR
Sbjct: 188 EKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNR 227
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 73/143 (51%), Gaps = 16/143 (11%)
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
D + N LI+ Y +CG I A ++++ S + + SW ++ G+ +G ++A++ +
Sbjct: 57 DQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQ 116
Query: 231 MQKVGLKPNRSWRIG-----------EEGLKF-FDKMVEECEVLPDIKHYGCLIDILERA 278
MQ+ GL P+R+ + E G + F M + +L D+K C++++ +
Sbjct: 117 MQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAM--QAGLLFDVKVANCILNMYAKC 174
Query: 279 GRLEQAEEVASGIPSQITNVVVW 301
G +E+A EV + + +VV W
Sbjct: 175 GSIEEAREVFDKMEKK--SVVSW 195
>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
Length = 2355
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 104/348 (29%), Positives = 174/348 (50%), Gaps = 67/348 (19%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76
P P D +T++ +++ C L+ G ++H +K G +S+++V +L D+Y +G
Sbjct: 120 PNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNC 179
Query: 77 DSSKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNR 115
+ KLFDE+ R++V+WN +I+G LV W+ +I GY+R+
Sbjct: 180 IAQKLFDEMVVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARVGN 239
Query: 116 SNEA-------------------------------LALFRRMAACEYTEPSEITILAVLP 144
EA + LFR+M P+++T+++VL
Sbjct: 240 LEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGLAPNDVTLVSVLS 299
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A G + + IH + +R + + N L D YAKCGC+ A +F + + ++
Sbjct: 300 ACAHLGALDLGKWIHRFI-RRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHE--MHERD 356
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFD 253
++SW+ II G AM+G EA F M + GL+PN +G ++GL++FD
Sbjct: 357 VISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFD 416
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
M + + P I+HYGC++D+L RAGRL+QAE + + +P Q NV+VW
Sbjct: 417 MMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQ-PNVIVW 463
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 96/222 (43%), Gaps = 35/222 (15%)
Query: 103 WTGIIDGYSRMNRSNEALALFR-RMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
+ ++ +S+ N + ++ F ++ P E T +VL A +V Q +H +
Sbjct: 93 YNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVHCF 152
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
K G + ++ V N L+D Y K GC A KLF++ V +++VSW T+ISG+ GM
Sbjct: 153 VTKYGCES-NLFVRNSLVDLYFKVGCNCIAQKLFDEMVV--RDVVSWNTLISGYCFSGMV 209
Query: 222 KEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRL 281
+A RM FD M+E+ ++ + +I R G L
Sbjct: 210 DKA-----RM-------------------VFDGMMEK-----NLVSWSTMISGYARVGNL 240
Query: 282 EQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQ 323
E+A ++ +P + NVV W N + I L Q
Sbjct: 241 EEARQLFENMP--MRNVVSWNAMIAGYAQNEKYADAIELFRQ 280
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 113/276 (40%), Gaps = 66/276 (23%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T ++ C L +LG +H + + +++ AL DMY G + ++ +F
Sbjct: 290 NDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVF 349
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E+ ER++++W++II GL + GY +NEA F M + EP++I+ + +
Sbjct: 350 HEMHERDVISWSIIIMGLAMY-----GY-----ANEAFNFFAEMIE-DGLEPNDISFMGL 398
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFD-----------IHVSNCLIDTYAKCGCIFSA 191
L A G V +G FD I C++D ++ G + A
Sbjct: 399 LTACTHAGLV-----------DKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQA 447
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKF 251
L + + N++ W ++ G ++ ++ ER ++V WRI E
Sbjct: 448 ESLINSMPM-QPNVIVWGALLGGCRIY-------KDAERGERV------VWRILE----- 488
Query: 252 FDKMVEECEVLPDIKHYGCLI---DILERAGRLEQA 284
D H G L+ ++ GRL+ A
Sbjct: 489 -----------LDSNHSGSLVYLANVYASMGRLDDA 513
>gi|147806246|emb|CAN72195.1| hypothetical protein VITISV_014979 [Vitis vinifera]
Length = 558
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 159/292 (54%), Gaps = 28/292 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ F+++ C L G LH++ K+GF S VYV L Y GFL + K F
Sbjct: 86 DHFTFPFVLKACARL---QTGLDLHSLLFKLGFDSDVYVQNGLIHFYGCCGFLDFALKAF 142
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+PER+LV+W+ +I K +G+ EALALF+RM +P E+ +L+V
Sbjct: 143 EEMPERDLVSWSSMIACFAK-----NGFGY-----EALALFQRMQLVGTVKPDEVIVLSV 192
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ AI G++ + I G+ + G F + + L+D +++CGCI + ++F++ +
Sbjct: 193 VSAISILGDLELGKWIRGFISRNGLE-FTVSLGTALVDMFSRCGCIEESMRVFDE--MGE 249
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+N+++WT +I+G A+HG EA+ F M+ G +P+ G EG
Sbjct: 250 RNVLTWTALINGLAVHGRSAEALRMFYEMRNHGFQPDHVTFTGVLVACSHGGLVSEGWHV 309
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ + E + P +HYGC++D+L RAG L +A + G+P + N ++WRT
Sbjct: 310 FESIRNEYGMEPLPEHYGCMVDLLGRAGLLNEACKFVDGMPIR-PNSIIWRT 360
>gi|297739678|emb|CBI29860.3| unnamed protein product [Vitis vinifera]
Length = 655
Score = 167 bits (422), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 165/295 (55%), Gaps = 27/295 (9%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P ++FT +F+++ C +S G Q+HA K GF S +V TAL + Y + +S
Sbjct: 157 PNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLAS 216
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
K+FDE+ +RNLV W+ +I+ GY+R+ NEAL LFR M P E+T+
Sbjct: 217 KVFDEITDRNLVAWSTMIS----------GYARIGLVNEALGLFRDMQKAGVV-PDEVTM 265
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
++V+ A +G + + +H Y K+ D+ +S L++ YAKCGCI A ++F+
Sbjct: 266 VSVISACAASGALDTGKWVHAYINKQLIET-DLELSTALVNMYAKCGCIERAKEVFDAMP 324
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
V K+ +W+++I G A++G+ ++A+E F RM++ +KPN IG EG
Sbjct: 325 V--KDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEG 382
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+++ M+ E ++P ++ YGC++D+L RA +E A + +P N V+WRT
Sbjct: 383 RRYWSSML-EFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPIS-PNPVIWRT 435
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 118/249 (47%), Gaps = 24/249 (9%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT 132
G + + KLF ++ N+ +WN +I G + S E + LFR+M Y
Sbjct: 107 GDIDYARKLFSQIQRPNIFSWNSMIRGCSQ---------SQTPSKEPVILFRKMVRRGYP 157
Query: 133 EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSAS 192
P+ T+ VL A + Q +H K GF + V L++ YAKC I AS
Sbjct: 158 NPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPF-VETALVNFYAKCEDIVLAS 216
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI-------- 244
K+F++ + +NLV+W+T+ISG+A G+ EA+ F MQK G+ P+ +
Sbjct: 217 KVFDE--ITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAA 274
Query: 245 --GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
+ K+ + + + D++ L+++ + G +E+A+EV +P + T W
Sbjct: 275 SGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTK--AWS 332
Query: 303 TGFLRLLIN 311
+ + L IN
Sbjct: 333 SMIVGLAIN 341
>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 152/281 (54%), Gaps = 24/281 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +T + ++ C + G ++H + ++V+ AL DMY G ++++ +F
Sbjct: 396 DVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVF 455
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E+ +++++WN +I G YS+ +NEAL+LF + + P E T+ V
Sbjct: 456 SEMRVKDIISWNTVIGG----------YSKNCYANEALSLFNLLLVEKRFSPDERTVACV 505
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LPA + IHGY + G+ + D HV+N L+D YAKCG + A LF+D +
Sbjct: 506 LPACASLSAFDKGREIHGYIMRNGYFS-DRHVANSLVDMYAKCGALLLARLLFDD--ITS 562
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
K+LVSWT +I+G+ MHG GKEA+ F +M++ G++P+ + +EG +F
Sbjct: 563 KDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRF 622
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
F+ M EC++ P ++HY C++D+L R G L +A +P
Sbjct: 623 FNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMP 663
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 149/293 (50%), Gaps = 28/293 (9%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
DS+T+S + ++ +L N G QLH K GF V +L Y+ + + K+
Sbjct: 193 MDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKV 252
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FDE+ ER++++WN II+GY + + L++F +M E TI++
Sbjct: 253 FDEMTERDVISWN----------SIINGYVSNGLAEKGLSVFVQMLF-SGIEIDLATIVS 301
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
V + + + +H +G K F+ D N L+D Y+KCG + SA +F + S
Sbjct: 302 VFAGCADSRLISLGRAVHCFGVKACFSRED-RFCNTLLDMYSKCGDLDSAKVVFREMS-- 358
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLK 250
+++VS+T++I+G+A G+ EAV+ FE M++ G+ P+ R+ +EG K
Sbjct: 359 GRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEG-K 417
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ ++E ++ DI L+D+ + G + +AE V S + ++ +++ W T
Sbjct: 418 RVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEM--RVKDIISWNT 468
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 101/215 (46%), Gaps = 14/215 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T +++ C G ++ GF + + L MY + G LK++S++F
Sbjct: 93 DPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVF 152
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++ + WN+++ L K +G G ++ LF++M + E T V
Sbjct: 153 DQVKIEKALFWNILMNELAK-SGDFSG---------SIGLFKKMMS-SGVEMDSYTFSCV 201
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ V + +HGY K GF + V N L+ Y K + SA K+F++ +
Sbjct: 202 SKSFSSLRSVNGGEQLHGYILKSGFGERN-SVGNSLVAFYLKNHRVDSARKVFDEMT--E 258
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
++++SW +II+G+ +G+ ++ + F +M G++
Sbjct: 259 RDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIE 293
>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
[Vitis vinifera]
Length = 564
Score = 167 bits (422), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 165/295 (55%), Gaps = 27/295 (9%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P ++FT +F+++ C +S G Q+HA K GF S +V TAL + Y + +S
Sbjct: 88 PNPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLAS 147
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
K+FDE+ +RNLV W+ +I+ GY+R+ NEAL LFR M P E+T+
Sbjct: 148 KVFDEITDRNLVAWSTMIS----------GYARIGLVNEALGLFRDMQKAGVV-PDEVTM 196
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
++V+ A +G + + +H Y K+ D+ +S L++ YAKCGCI A ++F+
Sbjct: 197 VSVISACAASGALDTGKWVHAYINKQLIET-DLELSTALVNMYAKCGCIERAKEVFDAMP 255
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
V K+ +W+++I G A++G+ ++A+E F RM++ +KPN IG EG
Sbjct: 256 V--KDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFIGVLSACAHSGLVSEG 313
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+++ M+ E ++P ++ YGC++D+L RA +E A + +P N V+WRT
Sbjct: 314 RRYWSSML-EFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPIS-PNPVIWRT 366
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/249 (27%), Positives = 118/249 (47%), Gaps = 24/249 (9%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT 132
G + + KLF ++ N+ +WN +I G + S E + LFR+M Y
Sbjct: 38 GDIDYARKLFSQIQRPNIFSWNSMIRGCSQ---------SQTPSKEPVILFRKMVRRGYP 88
Query: 133 EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSAS 192
P+ T+ VL A + Q +H K GF + V L++ YAKC I AS
Sbjct: 89 NPNTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPF-VETALVNFYAKCEDIVLAS 147
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI-------- 244
K+F++ + +NLV+W+T+ISG+A G+ EA+ F MQK G+ P+ +
Sbjct: 148 KVFDE--ITDRNLVAWSTMISGYARIGLVNEALGLFRDMQKAGVVPDEVTMVSVISACAA 205
Query: 245 --GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
+ K+ + + + D++ L+++ + G +E+A+EV +P + T W
Sbjct: 206 SGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDTK--AWS 263
Query: 303 TGFLRLLIN 311
+ + L IN
Sbjct: 264 SMIVGLAIN 272
>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 603
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 159/293 (54%), Gaps = 26/293 (8%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D++T+ L++ C G QLH + K+G +VYV L +MY + +
Sbjct: 126 LPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARC 185
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD + E +V +N +ITG Y+R NR NEAL+LFR M +Y +P+EIT+L
Sbjct: 186 VFDRIVEPCVVCYNAMITG----------YARRNRPNEALSLFREMQG-KYLKPNEITLL 234
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+VL + G + + IH Y +K F + + V+ LID +AKCG + A +FE +
Sbjct: 235 SVLSSCALLGSLDLGKWIHKYAKKHSFCKY-VKVNTALIDMFAKCGSLDDAVSIFE--KM 291
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
K+ +W+ +I +A HG ++++ FERM+ ++P+ +G EEG
Sbjct: 292 RYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGR 351
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
K+F +MV + ++P IKHYG ++D+L RAG LE A E +P T ++WR
Sbjct: 352 KYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTP-MLWR 403
>gi|297834808|ref|XP_002885286.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331126|gb|EFH61545.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 471
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 148/266 (55%), Gaps = 23/266 (8%)
Query: 42 LGTQLHAVFSKVGF--QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG 99
+G +H + K+GF +S + + T L Y G L+ + K+FDE+PER VTWN +I G
Sbjct: 128 VGRIVHGMVKKLGFLYESEL-IGTTLLHCYAKNGDLRYARKVFDEMPERTSVTWNAMIGG 186
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAAC-EYTEPSEITILAVLPAIWKNGEVRNCQLI 158
+ +R +A+ LFRR + C P++ T++ VLPAI + G + L+
Sbjct: 187 YCSHKDKGNHNAR-----KAMILFRRFSCCGSGVRPTDTTMVCVLPAISQTGLIEIGSLV 241
Query: 159 HGYGEKRGFNA-FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAM 217
HGY EK GF D+ + L+D Y+KCGC+ SA +FE V KN+ +WT++ +G A+
Sbjct: 242 HGYIEKLGFTPEIDVFIGTGLVDMYSKCGCLNSAFSVFELMKV--KNVFTWTSMATGLAL 299
Query: 218 HGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKFFDKMVEECEVLPDIK 266
HG G E +RM + G+KPN R + +EG++ F M V P I+
Sbjct: 300 HGRGNETPNLLDRMAESGIKPNEVTFTSLLSAYRHIGLVQEGIELFKSMRTRFGVTPVIQ 359
Query: 267 HYGCLIDILERAGRLEQAEEVASGIP 292
HYGC++D+L +AGR+++A E +P
Sbjct: 360 HYGCIVDLLGKAGRIQEAYEFVLAMP 385
>gi|293335745|ref|NP_001168519.1| uncharacterized protein LOC100382299 [Zea mays]
gi|223948835|gb|ACN28501.1| unknown [Zea mays]
Length = 599
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 172/313 (54%), Gaps = 35/313 (11%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
VY+++ + + SP P +SFT +F ++ C + P G QLHA + G + YV
Sbjct: 112 VYRRM----LRAGSPRP---NSFTLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQ 164
Query: 63 TALGDMYVSLGFLKDSSKLFDELP-ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALA 121
T L ++Y + + +FD + ++NLV W+ +++ GYSR+ NEAL
Sbjct: 165 TGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVS----------GYSRVGMVNEALG 214
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LFR M A EP E+T+++V+ A K G + + +H Y +++G D+ +S LID
Sbjct: 215 LFREMQAVG-VEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGIT-VDLELSTALIDM 272
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG I A +F+ ++ K+ +W+ +I GFA+HG+ ++A+ F RM ++ ++PN
Sbjct: 273 YAKCGLIERARGVFD--AMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNV 330
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
IG E+G +++ M + + P +++YGC++D+L R+G L+ A G
Sbjct: 331 TFIGVLSACAHSGLVEDGRRYWSIM-QNLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIG 389
Query: 291 IPSQITNVVVWRT 303
+P N V+WRT
Sbjct: 390 MPVS-PNSVIWRT 401
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 102/220 (46%), Gaps = 29/220 (13%)
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI- 139
LFD++P+ +N +I L S ALA++RRM P+ T+
Sbjct: 82 LFDQIPDPTAFCYNSLIRALPAAG-----------SAPALAVYRRMLRAGSPRPNSFTLA 130
Query: 140 --LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
L A+ GE R +H ++G A +V L++ YAKC + A +F+
Sbjct: 131 FALKACAAVPAPGEGRQ---LHAQALRQGL-ATSAYVQTGLLNLYAKCEQVALARTVFDG 186
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---------SWRIGEEG 248
+ D KNLV+W+ ++SG++ GM EA+ F MQ VG++P+ + G
Sbjct: 187 MAGD-KNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALD 245
Query: 249 L-KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
L K+ ++ + D++ LID+ + G +E+A V
Sbjct: 246 LGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGV 285
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 21/194 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T +I C +LG +HA + G + ++TAL DMY G ++ + +F
Sbjct: 227 DEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVF 286
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + E++ W+ +I G G+++ +AL LF RM + P+ +T + V
Sbjct: 287 DAMVEKDTKAWSAMIVGFA-IHGLVE---------DALGLFSRMLELK-VRPNNVTFIGV 335
Query: 143 LPAIWKNGEVRNCQ----LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
L A +G V + + ++ G K + C++D + G + A
Sbjct: 336 LSACAHSGLVEDGRRYWSIMQNLGIKPSMENY-----GCMVDLLCRSGLLDDAYSFVIGM 390
Query: 199 SVDRKNLVSWTTII 212
V N V W T++
Sbjct: 391 PVS-PNSVIWRTLL 403
>gi|115441047|ref|NP_001044803.1| Os01g0848300 [Oryza sativa Japonica Group]
gi|15408890|dbj|BAB64281.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113534334|dbj|BAF06717.1| Os01g0848300 [Oryza sativa Japonica Group]
gi|125572632|gb|EAZ14147.1| hypothetical protein OsJ_04076 [Oryza sativa Japonica Group]
Length = 660
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/286 (33%), Positives = 156/286 (54%), Gaps = 30/286 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPN-----LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD 77
DS++Y+ ++ C+ S + L ++HA + G+ H +V T L D Y LG +
Sbjct: 179 DSYSYAHGLKACIAASTSHVPASALVREIHAHAVRRGYGLHTHVATTLIDCYAKLGIVSY 238
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC-EYTEPSE 136
+ +F +PERN+V+W T +I Y++ R +A+ LF+ M A E P+
Sbjct: 239 AESVFATMPERNVVSW----------TAMIGCYAKNERPGDAILLFQEMVASDEDLVPNS 288
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
+TI+ +L A + +L+H Y +RGF++ + V N L+ Y KCGC+ + +F
Sbjct: 289 VTIVCILHAFAGVNALGQGKLLHAYILRRGFDSL-VSVLNALMAMYMKCGCLEAGRHIF- 346
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIG 245
D RK++VSW T+ISG+ MHG G EAV+ FE M ++G+ PN +
Sbjct: 347 DLIGHRKDVVSWNTLISGYGMHGFGHEAVQVFEDMTQMGVSPNIITFISVLGACSHAGLV 406
Query: 246 EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
+EG + F+ MV+ V P +HY C++D+L RAG L++A E+ G+
Sbjct: 407 DEGKRLFESMVDY-NVTPRAEHYACMVDLLGRAGHLDEAVELIQGM 451
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 85/184 (46%), Gaps = 23/184 (12%)
Query: 55 FQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMN 114
F+S +++T L D Y SLG L + ++FDE P +++ WN ++ L +
Sbjct: 110 FRSDPFLSTRLIDAYASLGELPAARQVFDEAPVKSIFVWNALLKALAL----------AD 159
Query: 115 RSNEALALFRRMA-------ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF 167
EALA M + Y + I A + + VR IH + +RG+
Sbjct: 160 HGEEALARLADMGRLRVPVDSYSYAHGLKACIAASTSHVPASALVRE---IHAHAVRRGY 216
Query: 168 NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVEN 227
HV+ LID YAK G + A +F ++ +N+VSWT +I +A + +A+
Sbjct: 217 -GLHTHVATTLIDCYAKLGIVSYAESVF--ATMPERNVVSWTAMIGCYAKNERPGDAILL 273
Query: 228 FERM 231
F+ M
Sbjct: 274 FQEM 277
>gi|296089801|emb|CBI39620.3| unnamed protein product [Vitis vinifera]
Length = 591
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 160/282 (56%), Gaps = 26/282 (9%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
+ F++S +R C ++ G QLHA +K GF+S++ V ++ DMY ++++
Sbjct: 193 LNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRY 252
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F E+ +R+L+TWN +I GY R N + E+L +F M + E P+ T +
Sbjct: 253 FYEMNQRDLITWNTLIA----------GYERSNPT-ESLYVFSMMES-EGFSPNCFTFTS 300
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
++ A + Q IHG +RG + ++ +SN LID Y+KCG I + ++F S
Sbjct: 301 IMAACATLAFLNCGQQIHGRIIRRGLDG-NLALSNALIDMYSKCGNIADSHQVFGGMS-- 357
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
R++LVSWT ++ G+ HG G+EAVE F++M + G++P+R + +EGL+
Sbjct: 358 RRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLR 417
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+F MV + + PD + YGC++D+L RAG++E+A E+ +P
Sbjct: 418 YFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMP 459
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 106/218 (48%), Gaps = 16/218 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF-LKDSSKL 81
++FT S +++ C + + G +H + K G +YV+ AL DMY + + D+ +
Sbjct: 92 NAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMV 151
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F + +N V+W +I G +T DGY L +FR+M E E + +
Sbjct: 152 FRGIHLKNEVSWTTLIAG---YTHRDDGYG-------GLRVFRQMLL-EEVELNPFSFSI 200
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+ A G + +H K GF + ++ V N ++D Y +C C A++ F + ++
Sbjct: 201 AVRACTSIGSHTFGEQLHAAVTKHGFES-NLPVMNSILDMYCRCSCFSEANRYFYE--MN 257
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+++L++W T+I+G+ E++ F M+ G PN
Sbjct: 258 QRDLITWNTLIAGYERSN-PTESLYVFSMMESEGFSPN 294
>gi|356509555|ref|XP_003523513.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 542
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/295 (34%), Positives = 158/295 (53%), Gaps = 34/295 (11%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
+FT+ FL++ C P LG QLHA+ +K+GF +Y+ L MY G L + LFD
Sbjct: 67 NFTFPFLLKCCAPSKLPPLGKQLHALLTKLGFAPDLYIQNVLVHMYSEFGDLVLARSLFD 126
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
+P R++V+W +I+GLV + EA++LF RM C E +E T+++VL
Sbjct: 127 RMPHRDVVSWTSMISGLVN----------HDLPVEAISLFERMLQCG-VEVNEATVISVL 175
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNAFDIH----VSNCLIDTYAKCGCIFSASKLFEDTS 199
A +G + + +H E+ G +IH VS L+D YAK GCI
Sbjct: 176 RARADSGALSMGRKVHANLEEWG---IEIHSKSNVSTALVDMYAKSGCIVRKVF----DD 228
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEG 248
V +++ WT +ISG A HG+ K+A++ F M+ G+KP+ R+ + EG
Sbjct: 229 VVDRDVFVWTAMISGLASHGLCKDAIDMFVDMESSGVKPDERTVTTVLTACRNAGLIREG 288
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F + + P I+H+GCL+D+L RAGRL++AE+ + +P + + V+WRT
Sbjct: 289 FMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMPIE-PDAVLWRT 342
>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 705
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 152/275 (55%), Gaps = 25/275 (9%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D T + L+ C L +G +H + K G +V AL DMY ++D+
Sbjct: 229 LPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARF 288
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
LFD++PER+LVTW V+I GY+ +NE+L LF +M E P ++ ++
Sbjct: 289 LFDKMPERDLVTWTVMIG----------GYAECGNANESLVLFDKMRE-EGVVPDKVAMV 337
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
V+ A K G + + I Y +++ F D+ + +ID +AKCGC+ SA ++F+ +
Sbjct: 338 TVVFACAKLGAMHKARTIDDYIQRKKFQ-LDVILGTAMIDMHAKCGCVESAREIFD--RM 394
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
+ KN++SW+ +I+ + HG G++A++ F M + G+ PN+ + EEGL
Sbjct: 395 EEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGL 454
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
+FF M E+ V D+KHY C++D+L RAGRL++A
Sbjct: 455 RFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEA 489
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 124/218 (56%), Gaps = 14/218 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++T F+IR C L +G +H + K G +V AL DMYV ++D+ LF
Sbjct: 29 DNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLF 88
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++ ER+LVTW V+I GY+ ++NE+L LF +M E P ++ ++ V
Sbjct: 89 DKMQERDLVTWTVMIG----------GYAECGKANESLVLFEKMRE-EGVVPDKVAMVTV 137
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A K G + ++I Y +++ F D+ + +ID YAKCGC+ SA ++F+ ++
Sbjct: 138 VFACAKLGAMHKARIIDDYIQRKKFQ-LDVILGTAMIDMYAKCGCVESAREIFD--RMEE 194
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
KN++SW+ +I+ + HG G++A++ F M G+ P++
Sbjct: 195 KNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDK 232
>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
Length = 599
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/306 (33%), Positives = 157/306 (51%), Gaps = 22/306 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ +C L +LG + H + G + V + AL DMY+ G L+ + KLF
Sbjct: 179 DEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLF 238
Query: 83 DELPERNLVTWNVII------TGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE 136
D + + +V+W ++ +V W +I GY NR EALALF M A P E
Sbjct: 239 DSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMN-INPDE 297
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
+T+++ L A + G + IH Y EK + ++ + LID YAKCG I A ++F+
Sbjct: 298 VTMVSCLSACSQLGALDVGIWIHHYIEKHEL-SLNVALGTALIDMYAKCGKITKAIQVFQ 356
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG----------- 245
+ + +N ++WT IISG A+HG A+ F M + P+ +G
Sbjct: 357 E--LPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLV 414
Query: 246 EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGF 305
EEG K+F +M + + P +KHY C++D+L RAG LE+AEE+ +P + + VVW F
Sbjct: 415 EEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIE-ADAVVWGALF 473
Query: 306 LRLLIN 311
I+
Sbjct: 474 FACRIH 479
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 149/306 (48%), Gaps = 44/306 (14%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++TY L + C LS +G+++ +GF S ++V+ A+ + VS G L + K+F
Sbjct: 78 DNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMF 137
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D+ R+LV+WN +I+GY R + EAL +R M E +P E+T++ V
Sbjct: 138 DKSCVRDLVSWN----------SMINGYVRRGWAYEALNFYREMKV-EGIKPDEVTMIGV 186
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ + + ++ + H Y E+ G + ++N L+D Y KCG + SA KLF+ S+
Sbjct: 187 VSSCAQLEDLDLGRESHCYIEENGLK-LTVPLANALMDMYMKCGNLESARKLFD--SMTN 243
Query: 203 KNLVSWTT----------------IISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG- 245
K +VSWTT +I G+ GKEA+ F MQ + + P+ +
Sbjct: 244 KTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSC 303
Query: 246 ----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQI 295
+ G+ + +E+ E+ ++ LID+ + G++ +A +V +P +
Sbjct: 304 LSACSQLGALDVGI-WIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGR- 361
Query: 296 TNVVVW 301
N + W
Sbjct: 362 -NSLTW 366
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 99/220 (45%), Gaps = 33/220 (15%)
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
W I G+ EA+ L++R+ C+ T+P T + A + +R I G+
Sbjct: 46 WNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHV 105
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
GF++ DI VSN +I CG + A K+F+ + V ++LVSW ++I+G+ G
Sbjct: 106 LHLGFDS-DIFVSNAVIHLLVSCGDLDGARKMFDKSCV--RDLVSWNSMINGYVRRGWAY 162
Query: 223 EAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDI---KHYGC--------- 270
EA+ + M+ G+KP+ IG +V C L D+ + C
Sbjct: 163 EALNFYREMKVEGIKPDEVTMIG---------VVSSCAQLEDLDLGRESHCYIEENGLKL 213
Query: 271 -------LIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
L+D+ + G LE A ++ + ++ +V W T
Sbjct: 214 TVPLANALMDMYMKCGNLESARKLFDSMTNK--TMVSWTT 251
>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570 [Vitis vinifera]
Length = 607
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 160/282 (56%), Gaps = 26/282 (9%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
+ F++S +R C ++ G QLHA +K GF+S++ V ++ DMY ++++
Sbjct: 209 LNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGFESNLPVMNSILDMYCRCSCFSEANRY 268
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F E+ +R+L+TWN +I GY R N + E+L +F M + E P+ T +
Sbjct: 269 FYEMNQRDLITWNTLIA----------GYERSNPT-ESLYVFSMMES-EGFSPNCFTFTS 316
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
++ A + Q IHG +RG + ++ +SN LID Y+KCG I + ++F S
Sbjct: 317 IMAACATLAFLNCGQQIHGRIIRRGLDG-NLALSNALIDMYSKCGNIADSHQVFGGMS-- 373
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
R++LVSWT ++ G+ HG G+EAVE F++M + G++P+R + +EGL+
Sbjct: 374 RRDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLR 433
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+F MV + + PD + YGC++D+L RAG++E+A E+ +P
Sbjct: 434 YFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMP 475
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 85/178 (47%), Gaps = 15/178 (8%)
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
T L Y G + ++ LFDE+PER++V W V+I GY+ N A +
Sbjct: 47 TTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIA----------GYTSCNNHTHAWMV 96
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
F M E +P+ TI +VL A + +L+HG K G + F I+V N L+D Y
Sbjct: 97 FCEMMN-EELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGF-IYVDNALMDMY 154
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM--QKVGLKP 238
A C C+ + KN VSWTT+I+G+ G + F +M ++V L P
Sbjct: 155 ATC-CVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNP 211
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 106/218 (48%), Gaps = 16/218 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF-LKDSSKL 81
++FT S +++ C + + G +H + K G +YV+ AL DMY + + D+ +
Sbjct: 108 NAFTISSVLKACKGMKCLSYGRLVHGLAIKHGLDGFIYVDNALMDMYATCCVSMDDACMV 167
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F + +N V+W +I G +T DGY L +FR+M E E + +
Sbjct: 168 FRGIHLKNEVSWTTLIAG---YTHRDDGYG-------GLRVFRQMLL-EEVELNPFSFSI 216
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+ A G + +H K GF + ++ V N ++D Y +C C A++ F + ++
Sbjct: 217 AVRACTSIGSHTFGEQLHAAVTKHGFES-NLPVMNSILDMYCRCSCFSEANRYFYE--MN 273
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+++L++W T+I+G+ E++ F M+ G PN
Sbjct: 274 QRDLITWNTLIAGYERSN-PTESLYVFSMMESEGFSPN 310
>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 168/329 (51%), Gaps = 53/329 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT+ +++ C S G Q+H + K GF +V + L MYV ++D+ LF
Sbjct: 121 NRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLF 180
Query: 83 ------------DELPER----NLVTWNVIITG---------------------LVKWTG 105
EL +R N+V WN++I G +V W
Sbjct: 181 CKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWNV 240
Query: 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
+I GY++ EA+ LF+ M + +P+ +T+++VLPAI + G + + IH Y K
Sbjct: 241 MISGYAQNGHFIEAINLFQEMQSSN-IDPNYVTLVSVLPAIARIGALELGKWIHLYAGKN 299
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225
D+ + + L+D Y+KCG I A ++FE ++ ++N ++W+ II FAMHG ++A+
Sbjct: 300 KIEIDDV-LGSALVDMYSKCGSIDEALQVFE--TLPKRNAITWSAIIGAFAMHGRAEDAI 356
Query: 226 ENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDI 274
+F M K G+ PN IG EEG FF MV+ + P I+HYGC++D+
Sbjct: 357 IHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDL 416
Query: 275 LERAGRLEQAEEVASGIPSQITNVVVWRT 303
L RAG LE+AEE+ +P + + V+W+
Sbjct: 417 LGRAGHLEEAEELIRNMPIEPDD-VIWKA 444
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 83/342 (24%), Positives = 134/342 (39%), Gaps = 73/342 (21%)
Query: 16 SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVSLGF 74
SP PPL S ++ +C T P QLHA+F K G Q + + S
Sbjct: 15 SPQPPLILSKPFT----SCKT---PRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRD 67
Query: 75 LKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134
+ + +F ++PE N WN I+ L + + + +EAL LF M +P
Sbjct: 68 IDYARAVFRQMPEPNCFCWNTILRVLAE-------TNDEHLQSEALMLFSAMLCDGRVKP 120
Query: 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
+ T +VL A + +R + IHG K GF+ + +SN L+ Y C + A L
Sbjct: 121 NRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISN-LVRMYVMCAVMEDAYSL 179
Query: 195 FEDTSVD---------------------------------------------RKNLVSWT 209
F VD ++++VSW
Sbjct: 180 FCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPQRSVVSWN 239
Query: 210 TIISGFAMHGMGKEAVENFERMQKVGLKPN---------RSWRIGEEGL-KFFDKMVEEC 259
+ISG+A +G EA+ F+ MQ + PN RIG L K+ +
Sbjct: 240 VMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKN 299
Query: 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
++ D L+D+ + G +++A +V +P + N + W
Sbjct: 300 KIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKR--NAITW 339
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 81/190 (42%), Gaps = 15/190 (7%)
Query: 42 LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV 101
LG +H K + + +AL DMY G + ++ ++F+ LP+RN +T
Sbjct: 288 LGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFETLPKRNAIT--------- 338
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
W+ II ++ R+ +A+ F M T P+++ + +L A G V + +
Sbjct: 339 -WSAIIGAFAMHGRAEDAIIHFHLMGKAGVT-PNDVAYIGILSACSHAGLVEEGRSFFSH 396
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH--- 218
K I C++D + G + A +L + ++ +++ W ++ MH
Sbjct: 397 MVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVI-WKALLGACKMHKNL 455
Query: 219 GMGKEAVENF 228
MG+ E
Sbjct: 456 KMGERVAETL 465
>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 908
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 158/290 (54%), Gaps = 27/290 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +T + ++ C S + G +H+ K G S++ V AL +MY G ++++ +F
Sbjct: 396 DIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVF 455
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++P +++V+WN +I GYS+ NEAL LF M + +P +IT+ V
Sbjct: 456 SKIPVKDIVSWNTMI----------GGYSQNLLPNEALELFLDMQ--KQFKPDDITMACV 503
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LPA + + IHG+ +RG+ + D+HV+ L+D YAKCG + A LF+ + +
Sbjct: 504 LPACAGLAALDKGREIHGHILRRGYFS-DLHVACALVDMYAKCGLLVLAQLLFD--MIPK 560
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS-----------WRIGEEGLKF 251
K+L+SWT +I+G+ MHG G EA+ F M+ G++P+ S + EG KF
Sbjct: 561 KDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKF 620
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F+ M EC V P ++HY C++D+L R G L +A + +P + + +W
Sbjct: 621 FNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIK-PDTTIW 669
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/301 (27%), Positives = 141/301 (46%), Gaps = 52/301 (17%)
Query: 27 YSFLIRTCVTLSYPNLGT-----QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
Y+F TCV + LG ++H K+GF S+ V +L Y G ++ + L
Sbjct: 196 YTF---TCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNL 252
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FDEL E ++V+WN +I G V ++G+ S L +F +M E T+++
Sbjct: 253 FDELSEPDVVSWNSMINGCV-----VNGF-----SGNGLEIFIQMLILG-VEVDLTTLVS 301
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL A G + + +HG+G K F+ ++ SN L+D Y+KCG + A+++F +
Sbjct: 302 VLVACANIGNLSLGRALHGFGVKACFSE-EVVFSNTLLDMYSKCGNLNGATEVF--VKMG 358
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEV 261
+VSWT+II+ + G+ +A+ F+ MQ G++P+ + +V C
Sbjct: 359 DTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPD---------IYTVTSIVHACAC 409
Query: 262 LP------DIKHY-------------GCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
D+ Y LI++ + G +E+A V S IP + ++V W
Sbjct: 410 SSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIP--VKDIVSWN 467
Query: 303 T 303
T
Sbjct: 468 T 468
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 106/217 (48%), Gaps = 15/217 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ C + +LG LH K F V + L DMY G L ++++F
Sbjct: 295 DLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVF 354
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++ + +V+ WT II Y R ++A+ LF M + + P T+ ++
Sbjct: 355 VKMGDTTIVS----------WTSIIAAYVREGLYSDAIGLFDEMQS-KGVRPDIYTVTSI 403
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A + + + +H Y K G + ++ V+N LI+ YAKCG + A +F V
Sbjct: 404 VHACACSSSLDKGRDVHSYVIKNGMGS-NLPVTNALINMYAKCGSVEEARLVFSKIPV-- 460
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
K++VSW T+I G++ + + EA+E F MQK KP+
Sbjct: 461 KDIVSWNTMIGGYSQNLLPNEALELFLDMQK-QFKPD 496
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 102/212 (48%), Gaps = 14/212 (6%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
+Y +++ C G ++H+V G + L MYV+ G L K+FD++
Sbjct: 96 SYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDKI 155
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
+ WN++++ Y+++ E+++LF++M T VL
Sbjct: 156 MNDKVFLWNLLMS----------EYAKIGNFRESVSLFKKMQKLGVVGNC-YTFTCVLKC 204
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
G+V+ C+ +HGY K GF + + V N LI Y K G + SA LF++ S ++
Sbjct: 205 FAALGKVKECKRVHGYVLKLGFGS-NTAVVNSLIAAYFKFGGVESAHNLFDELS--EPDV 261
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
VSW ++I+G ++G +E F +M +G++
Sbjct: 262 VSWNSMINGCVVNGFSGNGLEIFIQMLILGVE 293
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 14/197 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + ++ C L+ + G ++H + G+ S ++V AL DMY G L + LF
Sbjct: 496 DDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLF 555
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +P+++L++W V+I GY NEA++ F M EP E + A+
Sbjct: 556 DMIPKKDLISWTVMIA----------GYGMHGFGNEAISTFNEMRIAG-IEPDESSFSAI 604
Query: 143 LPAIWKNGEVRNC-QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A +G + + + + G H + C++D A+ G + A K E +
Sbjct: 605 LNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYA-CVVDLLARMGNLSKAYKFIESMPI- 662
Query: 202 RKNLVSWTTIISGFAMH 218
+ + W ++SG +H
Sbjct: 663 KPDTTIWGVLLSGCRIH 679
>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 642
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 104/329 (31%), Positives = 168/329 (51%), Gaps = 53/329 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT+ +++ C S G Q+H + K GF +V + L MYV ++D+ LF
Sbjct: 121 NRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISNLVRMYVMCAVMEDAYSLF 180
Query: 83 ------------DELPER----NLVTWNVIITG---------------------LVKWTG 105
EL +R N+V WN++I G +V W
Sbjct: 181 CKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWNV 240
Query: 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
+I GY++ EA+ LF+ M + +P+ +T+++VLPAI + G + + IH Y K
Sbjct: 241 MISGYAQNGHFIEAINLFQEMQSSN-IDPNYVTLVSVLPAIARIGALELGKWIHLYAGKN 299
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225
D+ + + L+D Y+KCG I A ++FE ++ ++N ++W+ II FAMHG ++A+
Sbjct: 300 KVEIDDV-LGSALVDMYSKCGSIDKALQVFE--TLPKRNAITWSAIIGAFAMHGRAEDAI 356
Query: 226 ENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDI 274
+F M K G+ PN IG EEG FF MV+ + P I+HYGC++D+
Sbjct: 357 IHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEGRSFFSHMVKVVGLQPRIEHYGCMVDL 416
Query: 275 LERAGRLEQAEEVASGIPSQITNVVVWRT 303
L RAG LE+AEE+ +P + + V+W+
Sbjct: 417 LGRAGHLEEAEELIRNMPIEPDD-VIWKA 444
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 133/342 (38%), Gaps = 73/342 (21%)
Query: 16 SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVSLGF 74
SP PPL S ++ +C T P QLHA+F K G Q + + S
Sbjct: 15 SPQPPLILSKPFT----SCKT---PRDLKQLHAIFIKTGQIQDPLTAAEVIKFCAFSSRD 67
Query: 75 LKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134
+ + +F ++PE N WN I+ I+ + + +EAL LF M +P
Sbjct: 68 IDYARAVFRQMPEPNCFCWNTILR-------ILAETNDEHLQSEALMLFSAMLCDGRVKP 120
Query: 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
+ T +VL A + +R + IHG K GF+ + +SN L+ Y C + A L
Sbjct: 121 NRFTFPSVLKACARASRLREGKQIHGLIVKFGFHEDEFVISN-LVRMYVMCAVMEDAYSL 179
Query: 195 FEDTSVD------------------------------------RKNL---------VSWT 209
F VD KNL VSW
Sbjct: 180 FCKNVVDFDGSCQMELDKRKQDGNVVLWNIMIDGQVRLGDIKSAKNLFDEMPPRSVVSWN 239
Query: 210 TIISGFAMHGMGKEAVENFERMQKVGLKPN---------RSWRIGEEGL-KFFDKMVEEC 259
+ISG+A +G EA+ F+ MQ + PN RIG L K+ +
Sbjct: 240 VMISGYAQNGHFIEAINLFQEMQSSNIDPNYVTLVSVLPAIARIGALELGKWIHLYAGKN 299
Query: 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+V D L+D+ + G +++A +V +P + N + W
Sbjct: 300 KVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKR--NAITW 339
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 80/190 (42%), Gaps = 15/190 (7%)
Query: 42 LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV 101
LG +H K + + +AL DMY G + + ++F+ LP+RN +T
Sbjct: 288 LGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFETLPKRNAIT--------- 338
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
W+ II ++ R+ +A+ F M T P+++ + +L A G V + +
Sbjct: 339 -WSAIIGAFAMHGRAEDAIIHFHLMGKAGVT-PNDVAYIGILSACSHAGLVEEGRSFFSH 396
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH--- 218
K I C++D + G + A +L + ++ +++ W ++ MH
Sbjct: 397 MVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVI-WKALLGACKMHKNL 455
Query: 219 GMGKEAVENF 228
MG+ E
Sbjct: 456 KMGERVAETL 465
>gi|224143723|ref|XP_002325053.1| predicted protein [Populus trichocarpa]
gi|222866487|gb|EEF03618.1| predicted protein [Populus trichocarpa]
Length = 607
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 105/311 (33%), Positives = 164/311 (52%), Gaps = 48/311 (15%)
Query: 16 SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL 75
SP P D+ T+ F+++ C L G Q HA K+GFQS VY+N +L Y S G L
Sbjct: 121 SPFP---DNHTFPFVLKACAYLFALFEGKQAHAHLLKLGFQSDVYINNSLIHFYASCGSL 177
Query: 76 KDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS 135
+ + +FD++P+R+LV+WN +I V + E ++ EP
Sbjct: 178 ESAKNVFDKMPQRSLVSWNAMIDAFVLFGEF-----------ETALQLFVQFQQQFFEPD 226
Query: 136 EITILAVLPA----------IWKNG-EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK 184
TI +V+ A +W + +RNC G R + V+N L+D Y K
Sbjct: 227 GYTIQSVINACAGLCALSLGMWAHAFLLRNC----GVSVARDH----VLVNNSLLDMYCK 278
Query: 185 CGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-LKPNRSWR 243
CG + A+++FE + + ++ SW ++I GFAMHG G+ A+E FERM ++ PN
Sbjct: 279 CGSLDIATQIFE--GMQKHDVTSWNSMILGFAMHGKGELALECFERMIRISRFVPNSITF 336
Query: 244 IG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+G EG K+FD MV E ++ P ++HYGCL+DIL RAG +++A E+ + +P
Sbjct: 337 VGVLSACNHRYMVNEGRKYFDMMVNEYKIEPQLEHYGCLVDILARAGLIDEALELVASMP 396
Query: 293 SQITNVVVWRT 303
+ +VV+WR+
Sbjct: 397 MK-PDVVIWRS 406
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 10/151 (6%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
+ SL L + ++FD++ N WN++I + + + EA+ L+ M
Sbjct: 66 FSSLHDLNYAYRVFDQVDNPNSFMWNILIRACAQSQSV-------HLKREAILLYNTMLQ 118
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
P T VL A + + H + K GF + D++++N LI YA CG +
Sbjct: 119 RSSPFPDNHTFPFVLKACAYLFALFEGKQAHAHLLKLGFQS-DVYINNSLIHFYASCGSL 177
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
SA +F+ + +++LVSW +I F + G
Sbjct: 178 ESAKNVFD--KMPQRSLVSWNAMIDAFVLFG 206
>gi|224136482|ref|XP_002326871.1| predicted protein [Populus trichocarpa]
gi|222835186|gb|EEE73621.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 147/266 (55%), Gaps = 36/266 (13%)
Query: 67 DMYVSLGFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTG 105
D YV +G ++ + LFDE+PERN+++W +I G LV W
Sbjct: 207 DGYVKVGDMESARSLFDEMPERNVISWTSMIYGYCNNGDVLSARFLFDAMPEKNLVSWNA 266
Query: 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
+I GY + + +EAL LFR + + EP+E+T++++LPAI G + + +H + +++
Sbjct: 267 MIGGYCQNKQPHEALKLFRELQSSTVFEPNEVTVVSILPAIATLGALELGEWVHRFVQRK 326
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225
+A ++V L+D Y KCG I A K+F + + +K +W +I+GFAM+G+ EA+
Sbjct: 327 KLDA-AVNVCTSLVDMYLKCGEISKARKVFSE--IPKKETATWNALINGFAMNGLASEAL 383
Query: 226 ENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDI 274
E F MQ+ G+KPN G EEG F M+E + P I+HYGCL+D+
Sbjct: 384 EAFSEMQQEGIKPNDITMTGVLSACSHGGLVEEGKGQFKAMIES-GLSPKIEHYGCLVDL 442
Query: 275 LERAGRLEQAEEVASGIPSQITNVVV 300
L RAG L++AE + +P + +++
Sbjct: 443 LGRAGCLDEAENLIKSMPFEANGIIL 468
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 31/212 (14%)
Query: 35 VTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWN 94
TL LG +H + + V V T+L DMY+ G + + K+F E+P++ TWN
Sbjct: 308 ATLGALELGEWVHRFVQRKKLDAAVNVCTSLVDMYLKCGEISKARKVFSEIPKKETATWN 367
Query: 95 VIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRN 154
+I+G++ ++EAL F M E +P++IT+ VL A G V
Sbjct: 368 ----------ALINGFAMNGLASEALEAFSEMQQ-EGIKPNDITMTGVLSACSHGGLVE- 415
Query: 155 CQLIHGYGEKRGFNAF-------DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLV- 206
G G+ F A I CL+D + GC+ A L + + ++
Sbjct: 416 ----EGKGQ---FKAMIESGLSPKIEHYGCLVDLLGRAGCLDEAENLIKSMPFEANGIIL 468
Query: 207 SWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
S + GF+ + V N Q V ++P
Sbjct: 469 SSFSFACGFSNDVTRAQRVLN----QAVNMEP 496
>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
Length = 526
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 169/344 (49%), Gaps = 67/344 (19%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTAL-------GDMYVSLGFL 75
D FT+ F+++ C L + +G +H ++GF+S+ +V L GD+ V+
Sbjct: 77 DKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALF 136
Query: 76 KDSSK------------------------LFDELPERNLVTWNVIITG------------ 99
S+K LFDE+P ++LV+WNV+ITG
Sbjct: 137 DGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARK 196
Query: 100 ---------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
+V W +I GY + +AL +F M + P E+T+L++L A G
Sbjct: 197 LFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGEL-PDEVTMLSLLSACTDLG 255
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
++ Q IH + GF + + N LID YAKCG I A ++F+ + K++ +W +
Sbjct: 256 DLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQ--GMREKDVSTWNS 313
Query: 211 IISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEEC 259
++ G A HG ++++ F M+K+ ++P+ +G EEG ++FD M +E
Sbjct: 314 VLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEY 373
Query: 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ P+I+HYGC++D+L RAG L +A + + + N +VWRT
Sbjct: 374 NIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIE-PNAIVWRT 416
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 16/216 (7%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSS 79
L D T L+ C L + G ++H S++GF+ V + AL DMY G + +
Sbjct: 238 LPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRAL 297
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
++F + E+++ TWN ++ GL G++ +++ LF M + P EIT
Sbjct: 298 EVFQGMREKDVSTWNSVLGGLA-----FHGHA-----EKSIHLFTEMRKLK-IRPDEITF 346
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+ VL A G V + +I C++D + G + A F DT
Sbjct: 347 VGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFD-FIDTM 405
Query: 200 VDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQ 232
N + W T++ +HG +G+ A +M+
Sbjct: 406 KIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMR 441
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 100/232 (43%), Gaps = 51/232 (21%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA-ACEY 131
G + + +LF + E + WN +I G + ++ A++L+ +M C
Sbjct: 26 GTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLN----------AISLYSQMENGC-- 73
Query: 132 TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191
P + T VL A + V+ +HG + GF + + V N LI +A CG + A
Sbjct: 74 VRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFES-NTFVRNTLIYFHANCGDLAVA 132
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGL-- 249
LF+ ++ ++++V+W+ + +G+A R GE G+
Sbjct: 133 RALFDGSA--KRDVVAWSALTAGYA--------------------------RRGELGVAR 164
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ FD+M + D+ + +I + G +E A ++ +P + +VV W
Sbjct: 165 QLFDEM-----PVKDLVSWNVMITGYAKRGEMESARKLFDEVPKR--DVVTW 209
>gi|414880007|tpg|DAA57138.1| TPA: hypothetical protein ZEAMMB73_430226 [Zea mays]
Length = 648
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/313 (32%), Positives = 172/313 (54%), Gaps = 35/313 (11%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
VY+++ + + SP P +SFT +F ++ C + P G QLHA + G + YV
Sbjct: 161 VYRRM----LRAGSPRP---NSFTLAFALKACAAVPAPGEGRQLHAQALRQGLATSAYVQ 213
Query: 63 TALGDMYVSLGFLKDSSKLFDELP-ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALA 121
T L ++Y + + +FD + ++NLV W+ +++ GYSR+ NEAL
Sbjct: 214 TGLLNLYAKCEQVALARTVFDGMAGDKNLVAWSAMVS----------GYSRVGMVNEALG 263
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LFR M A EP E+T+++V+ A K G + + +H Y +++G D+ +S LID
Sbjct: 264 LFREMQAVG-VEPDEVTMVSVISACAKAGALDLGKWVHAYIDRKGIT-VDLELSTALIDM 321
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG I A +F D V+ K+ +W+ +I GFA+HG+ ++A+ F RM ++ ++PN
Sbjct: 322 YAKCGLIERARGVF-DAMVE-KDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNV 379
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
IG E+G +++ M + + P +++YGC++D+L R+G L+ A G
Sbjct: 380 TFIGVLSACAHSGLVEDGRRYWSIM-QNLGIKPSMENYGCMVDLLCRSGLLDDAYSFVIG 438
Query: 291 IPSQITNVVVWRT 303
+P N V+WRT
Sbjct: 439 MPVS-PNSVIWRT 450
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 102/220 (46%), Gaps = 29/220 (13%)
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI- 139
LFD++P+ +N +I L S ALA++RRM P+ T+
Sbjct: 131 LFDQIPDPTAFCYNSLIRALPAAG-----------SAPALAVYRRMLRAGSPRPNSFTLA 179
Query: 140 --LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
L A+ GE R +H ++G A +V L++ YAKC + A +F+
Sbjct: 180 FALKACAAVPAPGEGRQ---LHAQALRQGL-ATSAYVQTGLLNLYAKCEQVALARTVFDG 235
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---------SWRIGEEG 248
+ D KNLV+W+ ++SG++ GM EA+ F MQ VG++P+ + G
Sbjct: 236 MAGD-KNLVAWSAMVSGYSRVGMVNEALGLFREMQAVGVEPDEVTMVSVISACAKAGALD 294
Query: 249 L-KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
L K+ ++ + D++ LID+ + G +E+A V
Sbjct: 295 LGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGV 334
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 21/194 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T +I C +LG +HA + G + ++TAL DMY G ++ + +F
Sbjct: 276 DEVTMVSVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVF 335
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + E++ W+ +I G G+++ +AL LF RM + P+ +T + V
Sbjct: 336 DAMVEKDTKAWSAMIVGFA-IHGLVE---------DALGLFSRMLELK-VRPNNVTFIGV 384
Query: 143 LPAIWKNGEVRNCQ----LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
L A +G V + + ++ G K + C++D + G + A
Sbjct: 385 LSACAHSGLVEDGRRYWSIMQNLGIKPSMENY-----GCMVDLLCRSGLLDDAYSFVIGM 439
Query: 199 SVDRKNLVSWTTII 212
V N V W T++
Sbjct: 440 PVS-PNSVIWRTLL 452
>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Cucumis sativus]
Length = 781
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/317 (31%), Positives = 166/317 (52%), Gaps = 39/317 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHA-VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D T + C L LG ++H V ++GF + + + AL DMY G L + +
Sbjct: 344 DEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRI--DNALLDMYAKCGCLNIARNI 401
Query: 82 FDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEAL 120
FDE+ +N++ W +I+G +V WT +I+GY + + ++A+
Sbjct: 402 FDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAV 461
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
ALFR M + +P + T++ +L + G + + IHGY ++ D+ V LI+
Sbjct: 462 ALFREMQI-QRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRI-TMDVVVGTALIE 519
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
Y+KCGC+ + ++F + ++ K+ SWT+II G AM+G EA+ F M++VG KP+
Sbjct: 520 MYSKCGCVDKSLEIFYE--LEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDD 577
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
IG EEG +FF+ M + + P ++HYGC+ID+L RAG L++AEE+
Sbjct: 578 ITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQ 637
Query: 290 GIPSQITNVVVWRTGFL 306
IP + +VV G L
Sbjct: 638 EIPIENCEIVVPLYGAL 654
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 106/208 (50%), Gaps = 14/208 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FTY F+++ L G ++ K G YV +L DMY L ++++ KLF
Sbjct: 242 DGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLF 301
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ R+ V+WNV+I+ GY R R +A+ FR M +P E T+++
Sbjct: 302 DEMTTRDSVSWNVMIS----------GYVRCRRFEDAINTFREMQQEGNEKPDEATVVST 351
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + IH Y K F + N L+D YAKCGC+ A +F++ S+
Sbjct: 352 LSACTALKNLELGDEIHNYVRKEL--GFTTRIDNALLDMYAKCGCLNIARNIFDEMSM-- 407
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFER 230
KN++ WT++ISG+ G +EA + F++
Sbjct: 408 KNVICWTSMISGYINCGDLREARDLFDK 435
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 15/172 (8%)
Query: 71 SLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE 130
SLG L+ + K+F+ + + +L +NV++ K GI+ + L LF+++ +
Sbjct: 189 SLGNLRYAEKIFNYVQDPSLFVYNVMVKMYAK-RGIL---------RKVLLLFQQLRE-D 237
Query: 131 YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190
P T VL AI +VR + + G+ K G + D +V N LID Y + + +
Sbjct: 238 GLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMD-LDNYVYNSLIDMYYELSNVEN 296
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-LKPNRS 241
A KLF++ + ++ VSW +ISG+ ++A+ F MQ+ G KP+ +
Sbjct: 297 AKKLFDEMTT--RDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEA 346
>gi|224133278|ref|XP_002321528.1| predicted protein [Populus trichocarpa]
gi|222868524|gb|EEF05655.1| predicted protein [Populus trichocarpa]
Length = 450
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/315 (35%), Positives = 160/315 (50%), Gaps = 35/315 (11%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
F YK++Q+ + S DSFT+SFL++ C L LG +H K G SHV+
Sbjct: 73 FDYYKRMQERGLVS--------DSFTFSFLLKVCGQLGLVLLGRLMHCSTLKRGLNSHVF 124
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
V L MY + ++ S +LF+E+P LV WN+ IID + + NEAL
Sbjct: 125 VRNTLVHMYGTFKDIEASRQLFEEIPNPELVAWNI----------IIDCHVSCGKFNEAL 174
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
+F RM EP E T + +L A G + + +H G V+N L+D
Sbjct: 175 EMFSRMLKFG-IEPDEATFVVILSACSALGALDFGRWVHSCISNIGHGCI-TEVNNSLLD 232
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM--QK----- 233
YAKCG + A ++F +++KN V+W T+I G A HG EA+ F M QK
Sbjct: 233 MYAKCGALQEAFEIF--NGMNKKNTVTWNTMILGLASHGYANEALALFSNMLEQKLWAPD 290
Query: 234 -----VGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
V L + ++G +FFD M +E + P IKHYGC++DIL RAG +E+A +
Sbjct: 291 DITFLVVLSACSHGGMVDKGWRFFDIMKKEYHIQPTIKHYGCMVDILGRAGFVEEAYRLI 350
Query: 289 SGIPSQITNVVVWRT 303
S +P Q N +VWRT
Sbjct: 351 SNMPMQ-CNAIVWRT 364
>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 649
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 158/281 (56%), Gaps = 29/281 (10%)
Query: 23 DSFTYSFLIRTCVT----LSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
D FTY++L++ CV +S+ G ++HA + G+ +HV+V T L DMY G + +
Sbjct: 169 DRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYA 228
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE-PSEI 137
S +FDE+P +N+V+W+ +I Y++ + EAL LFR M + P+ +
Sbjct: 229 SAVFDEMPVKNVVSWSAMIA----------CYAKNGKPYEALELFREMMLNTHDSVPNSV 278
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
T+++VL A + +LIH Y +RG ++ + V + LI YA+CG + S +F+
Sbjct: 279 TMVSVLQACAAFAALEQGKLIHAYILRRGLDSI-LPVISALITMYARCGKLESGQLIFD- 336
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------E 246
+ +K++V W ++IS + +HG G++A++ FE M G P+ I E
Sbjct: 337 -RMHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVE 395
Query: 247 EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
EG K F+ MV+E + P ++HY C++D+L RA RL++A ++
Sbjct: 396 EGKKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKI 436
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 107/230 (46%), Gaps = 25/230 (10%)
Query: 8 QQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGD 67
Q +Y+ SH P T LI + + + +H + GF ++ T L +
Sbjct: 56 QALYLLSHESNPT---QQTCELLILSAARRNSLSDALDVHQLLVDGGFDQDPFLATKLIN 112
Query: 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV---KWTGIIDGYSRMNR---SNEALA 121
M+ L + ++ K+FD+ +R + WN + L + +++ Y RMN S++
Sbjct: 113 MFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLELYPRMNMMGVSSDRFT 172
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
+ AC +E ++ + K E+ L HGYG +HV L+D
Sbjct: 173 YTYLLKACVASE-------CLVSFLQKGKEIHAHILRHGYGAH-------VHVMTTLMDM 218
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
YA+ GC+ AS +F++ V KN+VSW+ +I+ +A +G EA+E F M
Sbjct: 219 YARFGCVSYASAVFDEMPV--KNVVSWSAMIACYAKNGKPYEALELFREM 266
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 99/212 (46%), Gaps = 17/212 (8%)
Query: 8 QQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGD 67
+++ +++H +P +S T +++ C + G +HA + G S + V +AL
Sbjct: 264 REMMLNTHDSVP---NSVTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALIT 320
Query: 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA 127
MY G L+ +FD + ++++V WN +I+ + GY R +A+ +F M
Sbjct: 321 MYARCGKLESGQLIFDRMHKKDVVLWNSLISSYG-----LHGYGR-----KAIKIFEEMI 370
Query: 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQ-LIHGYGEKRGFNAFDIHVSNCLIDTYAKCG 186
++ PS I+ ++VL A G V + L ++ G H + C++D +
Sbjct: 371 DHGFS-PSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYA-CMVDLLGRAN 428
Query: 187 CIFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218
+ A+K+ ED ++ V W +++ +H
Sbjct: 429 RLDEAAKIIEDLRIEPGPKV-WGSLLGACRIH 459
>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Vitis vinifera]
Length = 550
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 169/344 (49%), Gaps = 67/344 (19%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTAL-------GDMYVSLGFL 75
D FT+ F+++ C L + +G +H ++GF+S+ +V L GD+ V+
Sbjct: 112 DKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALF 171
Query: 76 KDSSK------------------------LFDELPERNLVTWNVIITG------------ 99
S+K LFDE+P ++LV+WNV+ITG
Sbjct: 172 DGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARK 231
Query: 100 ---------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
+V W +I GY + +AL +F M + P E+T+L++L A G
Sbjct: 232 LFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGEL-PDEVTMLSLLSACTDLG 290
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
++ Q IH + GF + + N LID YAKCG I A ++F+ + K++ +W +
Sbjct: 291 DLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQ--GMREKDVSTWNS 348
Query: 211 IISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEEC 259
++ G A HG ++++ F M+K+ ++P+ +G EEG ++FD M +E
Sbjct: 349 VLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEY 408
Query: 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ P+I+HYGC++D+L RAG L +A + + + N +VWRT
Sbjct: 409 NIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIE-PNAIVWRT 451
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 16/216 (7%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSS 79
L D T L+ C L + G ++H S++GF+ V + AL DMY G + +
Sbjct: 273 LPDEVTMLSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRAL 332
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
++F + E+++ TWN ++ GL G++ +++ LF M + P EIT
Sbjct: 333 EVFQGMREKDVSTWNSVLGGLA-----FHGHA-----EKSIHLFTEMRKLK-IRPDEITF 381
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+ VL A G V + +I C++D + G + A F DT
Sbjct: 382 VGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFD-FIDTM 440
Query: 200 VDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQ 232
N + W T++ +HG +G+ A +M+
Sbjct: 441 KIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMR 476
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 119/281 (42%), Gaps = 60/281 (21%)
Query: 28 SFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL----GFLKDSSKLFD 83
S L R+C T+ Q+HA GF S+ L +Y S G + + +LF
Sbjct: 17 SQLWRSCTTIGTLK---QIHASMIVKGFNSNTSALREL--IYASSIAISGTMAYAHQLFP 71
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA-ACEYTEPSEITILAV 142
+ E + WN +I G + ++ A++L+ +M C P + T V
Sbjct: 72 HITEPDTFMWNTMIRGSAQSPSPLN----------AISLYSQMENGC--VRPDKFTFPFV 119
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + V+ +HG + GF + + V N LI +A CG + A LF+ ++ +
Sbjct: 120 LKACTRLCWVKMGFGVHGRVFRLGFES-NTFVRNTLIYFHANCGDLAVARALFDGSA--K 176
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGL--KFFDKMVEECE 260
+++V+W+ + +G+A R GE G+ + FD+M
Sbjct: 177 RDVVAWSALTAGYA--------------------------RRGELGVARQLFDEM----- 205
Query: 261 VLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ D+ + +I + G +E A ++ +P + +VV W
Sbjct: 206 PVKDLVSWNVMITGYAKRGEMESARKLFDEVPKR--DVVTW 244
>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like, partial [Cucumis sativus]
Length = 735
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/317 (31%), Positives = 166/317 (52%), Gaps = 39/317 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHA-VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D T + C L LG ++H V ++GF + + + AL DMY G L + +
Sbjct: 298 DEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRI--DNALLDMYAKCGCLNIARNI 355
Query: 82 FDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEAL 120
FDE+ +N++ W +I+G +V WT +I+GY + + ++A+
Sbjct: 356 FDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAV 415
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
ALFR M + +P + T++ +L + G + + IHGY ++ D+ V LI+
Sbjct: 416 ALFREMQI-QKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRI-TMDVVVGTALIE 473
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
Y+KCGC+ + ++F + ++ K+ SWT+II G AM+G EA+ F M++VG KP+
Sbjct: 474 MYSKCGCVDKSLEIFYE--LEDKDTASWTSIICGLAMNGKTSEALRLFSEMERVGAKPDD 531
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
IG EEG +FF+ M + + P ++HYGC+ID+L RAG L++AEE+
Sbjct: 532 ITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEHYGCVIDLLGRAGLLDEAEELIQ 591
Query: 290 GIPSQITNVVVWRTGFL 306
IP + +VV G L
Sbjct: 592 EIPIENCEIVVPLYGAL 608
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 106/208 (50%), Gaps = 14/208 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FTY F+++ L G ++ K G YV +L DMY L ++++ KLF
Sbjct: 196 DGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLF 255
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ R+ V+WNV+I+ GY R R +A+ FR M +P E T+++
Sbjct: 256 DEMTTRDSVSWNVMIS----------GYVRCRRFEDAINTFREMQQEGNEKPDEATVVST 305
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + IH Y K F + N L+D YAKCGC+ A +F++ S+
Sbjct: 306 LSACTALKNLELGDEIHNYVRKEL--GFTTRIDNALLDMYAKCGCLNIARNIFDEMSM-- 361
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFER 230
KN++ WT++ISG+ G +EA + F++
Sbjct: 362 KNVICWTSMISGYINCGDLREARDLFDK 389
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 15/172 (8%)
Query: 71 SLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE 130
SLG L+ + K+F+ + + +L +NV++ K GI+ + L LF+++ +
Sbjct: 143 SLGNLRYAEKIFNYVQDPSLFVYNVMVKIYAK-RGIL---------RKVLLLFQQLRE-D 191
Query: 131 YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190
P T VL AI +VR + + G+ K G + D +V N LID Y + + +
Sbjct: 192 GLWPDGFTYPFVLKAIGCLRDVRQGEKVRGFIVKTGMD-LDNYVYNSLIDMYYELSNVEN 250
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-LKPNRS 241
A KLF++ + ++ VSW +ISG+ ++A+ F MQ+ G KP+ +
Sbjct: 251 AKKLFDEMTT--RDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDEA 300
>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g62890-like [Glycine max]
Length = 1116
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 171/321 (53%), Gaps = 43/321 (13%)
Query: 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF 74
H+ LP D T+ FL+++ ++ P+ G QLHA +G + +V T+L +MY S G
Sbjct: 57 HAVLP---DLHTFPFLLQS---INTPHRGRQLHAQILLLGLANDPFVQTSLINMYSSCGT 110
Query: 75 LKDSSKLFDELPERNLVTWNVII---------------------TGLVKWTGIIDGYSRM 113
+ + FDE+ + +L +WN II ++ W+ +I GY
Sbjct: 111 PTFARQAFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSC 170
Query: 114 NRSNEALALFRRMAACEYTE--PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD 171
AL+LFR + E ++ P+E T+ +VL A + G +++ + +H Y +K G D
Sbjct: 171 GEYKAALSLFRSLQTLEGSQLRPNEFTMSSVLSACARLGALQHGKWVHAYIDKTGMK-ID 229
Query: 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
+ + LID YAKCG I A +F++ + K++++W+ +I+ F+MHG+ +E +E F RM
Sbjct: 230 VVLGTSLIDMYAKCGSIERAKCIFDNLGPE-KDVMAWSAMITAFSMHGLSEECLELFARM 288
Query: 232 QKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGR 280
G++PN + EG ++F +M+ E V P I+HYGC++D+ RAGR
Sbjct: 289 VNDGVRPNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGR 348
Query: 281 LEQAEEVASGIPSQITNVVVW 301
+E A V +P + +V++W
Sbjct: 349 IEDAWNVVKSMPME-PDVMIW 368
>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 165 bits (418), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 155/302 (51%), Gaps = 35/302 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T ++ C S G +H+ + + ++ A+ DMY G ++D+ +LF
Sbjct: 236 NGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLF 295
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
D++PE+++V+W ++ G K W +I Y + + EAL
Sbjct: 296 DKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALE 355
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF + + +P E+T+++ L A + G + IH Y +K+G + H++ LID
Sbjct: 356 LFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMK-LNCHLTTSLIDM 414
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR- 240
Y KCG + A +F SV+RK++ W+ +I+G AMHG GK+A+ F +MQ+ +KPN
Sbjct: 415 YCKCGDLQKALMVFH--SVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAV 472
Query: 241 --------SWRIG--EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+G EEG FF++M VLP +KHY C++DIL RAG LE+A E+
Sbjct: 473 TFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEK 532
Query: 291 IP 292
+P
Sbjct: 533 MP 534
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 75/269 (27%), Positives = 120/269 (44%), Gaps = 43/269 (15%)
Query: 19 PPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
P D FT+ FLI+ L G H + KV S V++ +L Y G L
Sbjct: 131 PDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLG 190
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
++F +P R++V+WN +IT V+ EAL LF+ M + +P+ IT
Sbjct: 191 YRVFVNIPRRDVVSWNSMITAFVQG----------GCPEEALELFQEMET-QNVKPNGIT 239
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
++ VL A K + + +H Y E+ + +SN ++D Y KCG + A +LF+
Sbjct: 240 MVGVLSACAKKSDFEFGRWVHSYIERNRIGE-SLTLSNAMLDMYTKCGSVEDAKRLFD-- 296
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEE 258
+ K++VSWTT++ G+A G A F+ M PN+
Sbjct: 297 KMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAM------PNQ------------------ 332
Query: 259 CEVLPDIKHYGCLIDILERAGRLEQAEEV 287
DI + LI E+ G+ ++A E+
Sbjct: 333 -----DIAAWNALISAYEQCGKPKEALEL 356
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 125/274 (45%), Gaps = 33/274 (12%)
Query: 45 QLHAVFSKVG-----FQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG 99
Q+HA + G F + + A + SL + + ++FD++P NL TWN +I
Sbjct: 53 QIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDY---AQQVFDQIPHPNLYTWNTLIRA 109
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
Y+ + +++L +F RM P + T ++ A + E+ + H
Sbjct: 110 ----------YASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFH 159
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
G K + D+ + N LI YAKCG + ++F ++ R+++VSW ++I+ F G
Sbjct: 160 GMVIKVLLGS-DVFILNSLIHFYAKCGELGLGYRVF--VNIPRRDVVSWNSMITAFVQGG 216
Query: 220 MGKEAVENFERMQKVGLKPNRSWRIGE----------EGLKFFDKMVEECEVLPDIKHYG 269
+EA+E F+ M+ +KPN +G E ++ +E + +
Sbjct: 217 CPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGESLTLSN 276
Query: 270 CLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++D+ + G +E A+ + +P + ++V W T
Sbjct: 277 AMLDMYTKCGSVEDAKRLFDKMPEK--DIVSWTT 308
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 85/201 (42%), Gaps = 22/201 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + C L +LG +H K G + + ++ T+L DMY G L+ + +F
Sbjct: 369 DEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVF 428
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ +++ W+ +I GL + G+ + +A+ALF +M + +P+ +T +
Sbjct: 429 HSVERKDVFVWSAMIAGLA-----MHGHGK-----DAIALFSKMQE-DKVKPNAVTFTNI 477
Query: 143 LPAIWKNGEVRNC-----QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
L A G V Q+ YG G + C++D + G + A +L E
Sbjct: 478 LCACSHVGLVEEGRTFFNQMELVYGVLPGVKHY-----ACMVDILGRAGLLEEAVELIEK 532
Query: 198 TSVDRKNLVSWTTIISGFAMH 218
+ V W ++ +H
Sbjct: 533 MPMAPAASV-WGALLGACTIH 552
>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Glycine max]
Length = 721
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 95/311 (30%), Positives = 159/311 (51%), Gaps = 37/311 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ ++ C + G +H GF+ ++ T+L +MY + G + + +++
Sbjct: 216 DAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVY 275
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
D+LP +++V +++G LV W+ +I GY+ + EAL
Sbjct: 276 DQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQ 335
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M P +IT+L+V+ A G + + IH Y +K GF + ++N LID
Sbjct: 336 LFNEMQR-RRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGR-TLPINNALIDM 393
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG + A ++FE+ + RKN++SW+++I+ FAMHG A+ F RM++ ++PN
Sbjct: 394 YAKCGNLVKAREVFEN--MPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGV 451
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
IG EEG KFF M+ E + P +HYGC++D+ RA L +A E+
Sbjct: 452 TFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIET 511
Query: 291 IPSQITNVVVW 301
+P NV++W
Sbjct: 512 MPFP-PNVIIW 521
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 159/347 (45%), Gaps = 66/347 (19%)
Query: 10 IYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDM 68
+Y+H PL D F++ L++ LS NLG ++H + SK GF + ++ +AL M
Sbjct: 102 LYLHLRRNGFPL-DRFSFPPLLKAVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAM 160
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y + G + D+ LFD++ R++VTWN+ +IDGYS+ + L L+ M
Sbjct: 161 YAACGRIMDARFLFDKMSHRDVVTWNI----------MIDGYSQNAHYDHVLKLYEEMKT 210
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
TEP I + VL A G + + IH + + GF H+ L++ YA CG +
Sbjct: 211 -SGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGS-HIQTSLVNMYANCGAM 268
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGE-- 246
A ++++ + K++V T ++SG+A GM ++A F+RM + L + G
Sbjct: 269 HLAREVYD--QLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAE 326
Query: 247 -----EGLKFFDKMVEECEVLPD----------------------IKHYG---------- 269
E L+ F++M + ++PD I Y
Sbjct: 327 SYQPLEALQLFNEM-QRRRIVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLP 385
Query: 270 ---CLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSY 313
LID+ + G L +A EV +P + NV+ W + +IN++
Sbjct: 386 INNALIDMYAKCGNLVKAREVFENMPRK--NVISWSS-----MINAF 425
>gi|414591101|tpg|DAA41672.1| TPA: hypothetical protein ZEAMMB73_535355 [Zea mays]
Length = 502
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 150/284 (52%), Gaps = 24/284 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D ++ ++R C LG+ LH ++G ++V V+ AL DMY G L D+ ++F
Sbjct: 102 DRYSVPAVLRACAESRDALLGSVLHGFAVRLGLLANVVVSGALLDMYAKTGTLGDAGRVF 161
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI-TILA 141
DE+PER+ V WN ++T GY+R RS E L LFR+ ++ + +
Sbjct: 162 DEMPERDAVAWNCMVT----------GYARAGRSEETLELFRKAQIESAGMARDLRAVPS 211
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL G++ + IHG + ++ D V N LID Y KCG + A +F S++
Sbjct: 212 VLNVCADEGQLMKGREIHGRMARCLASSSDTVVGNALIDMYGKCGQVDGAQAVF--ASME 269
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLK 250
KN+VSW+++IS + +HGMGKEA+ +E M VG+KPN + +G +
Sbjct: 270 EKNVVSWSSLISCYGVHGMGKEALRVYEEMVSVGVKPNCVTFVSILSSCSHSGLVSDGRR 329
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
F+ M + V P HY C++D+L RAG +E+A + + +P +
Sbjct: 330 IFESMRKVHAVEPTADHYACMVDLLGRAGAIEEAVGLVNEMPME 373
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 140/321 (43%), Gaps = 40/321 (12%)
Query: 19 PPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
PP S S L+R C + G QLHA G ++T L +Y G L +
Sbjct: 3 PP--SSGRLSALLRRCAASGALSPGAQLHAQALVGGRLPDTTLDTDLVLLYSRCGALHRA 60
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
++FD +P ++ +NV++ + + A+ L R+ A P +
Sbjct: 61 REVFDGMPSPSMHAYNVLLAA--------------SPPDAAVKLVSRLVA-SGLRPDRYS 105
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+ AVL A ++ + ++HG+ + G A ++ VS L+D YAK G + A ++F++
Sbjct: 106 VPAVLRACAESRDALLGSVLHGFAVRLGLLA-NVVVSGALLDMYAKTGTLGDAGRVFDE- 163
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI-----------GE- 246
+ ++ V+W +++G+A G +E +E F + Q R R G+
Sbjct: 164 -MPERDAVAWNCMVTGYARAGRSEETLELFRKAQIESAGMARDLRAVPSVLNVCADEGQL 222
Query: 247 -EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGF 305
+G + +M D LID+ + G+++ A+ V + + + NVV W +
Sbjct: 223 MKGREIHGRMARCLASSSDTVVGNALIDMYGKCGQVDGAQAVFASMEEK--NVVSWSS-- 278
Query: 306 LRLLINSYFFSPITLNSQRLF 326
LI+ Y + + R++
Sbjct: 279 ---LISCYGVHGMGKEALRVY 296
>gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays]
Length = 619
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 120/380 (31%), Positives = 181/380 (47%), Gaps = 56/380 (14%)
Query: 10 IYIHSHSPLP----------PLF-------DSFTYSFLIRTCVTLSYPNLGTQLHAVFSK 52
I H+ SPLP PL + FT+ FL++ C ++P +G Q HA K
Sbjct: 115 IRAHAASPLPSARLRAASFFPLMLRSATLPNKFTFPFLLKACA--AFPGVGVQAHAAALK 172
Query: 53 VGFQSHVYVNTALGDMYVSLG--FLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGY 110
GF + YV+ L MY G FL D+ +FD + + + VTW + +I GY
Sbjct: 173 FGFTTDQYVSNTLIHMYSCFGGEFLGDARNVFDRMAKSSAVTW----------SAMIGGY 222
Query: 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF 170
R S++A+ LFR M A P E+T++ VL A G + + + + EK G
Sbjct: 223 VRSGLSSDAVGLFREMQA-SGVRPDEVTMIGVLAAAADLGALELARWVGRFVEKEGIGK- 280
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
+ + N LID AKCG + A +F+ + + +VSWT++I AM G GKEAV FE
Sbjct: 281 SVTLCNALIDALAKCGDLDGAMAVFQ--GMKERTIVSWTSVIDALAMEGRGKEAVAVFEE 338
Query: 231 MQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
M+ G++P+ IG +EG +F+ M + P I+HYGC++D+ RAG
Sbjct: 339 MKTAGVRPDDVAFIGVLTACSHAGMVDEGYGYFESMRMAYGIDPKIEHYGCMVDMFGRAG 398
Query: 280 RLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAA-------- 331
+E+A E +P + N ++WRT + T+ L +PA
Sbjct: 399 MVERAMEFVHKMPMK-PNPIIWRTLVAACRAHGRLELGETITRNLLNEYPAHEANYVMLS 457
Query: 332 -LYALTQILGFKPLFRKESS 350
+YALT+ K R+E S
Sbjct: 458 NVYALTRRWKEKSEIRREMS 477
>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 824
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 152/291 (52%), Gaps = 29/291 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT + ++ C G +H + QS ++V+ AL DMY G + D+ +F
Sbjct: 351 DIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVF 410
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY-TEPSEITILA 141
E+ +++V+WN +I GYS+ + NEAL LF M +Y ++P+ IT+
Sbjct: 411 SEMQVKDIVSWNT----------MIGGYSKNSLPNEALNLFVEM---QYNSKPNSITMAC 457
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+LPA + Q IHG+ + GF + D HV+N L+D Y KCG + A LF+ +
Sbjct: 458 ILPACASLAALERGQEIHGHILRNGF-SLDRHVANALVDMYLKCGALGLARLLFD--MIP 514
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
K+LVSWT +I+G+ MHG G EA+ F M+ G++P+ I +EG
Sbjct: 515 EKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWG 574
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
FF+ M C + P +HY C++D+L RAG L +A + +P + + +W
Sbjct: 575 FFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIE-PDATIW 624
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 106/217 (48%), Gaps = 15/217 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ C LG LH K F + +N L DMY G L + ++F
Sbjct: 250 DLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVF 309
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + ER++V+ WT +I GY+R S+ ++ LF M E P TI +
Sbjct: 310 ETMGERSVVS----------WTSMIAGYAREGLSDMSVRLFHEMEK-EGISPDIFTITTI 358
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + N + +H Y ++ + D+ VSN L+D YAKCG + A +F + V
Sbjct: 359 LHACACTGLLENGKDVHNYIKENKMQS-DLFVSNALMDMYAKCGSMGDAHSVFSEMQV-- 415
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
K++VSW T+I G++ + + EA+ F MQ KPN
Sbjct: 416 KDIVSWNTMIGGYSKNSLPNEALNLFVEMQ-YNSKPN 451
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/340 (23%), Positives = 149/340 (43%), Gaps = 58/340 (17%)
Query: 14 SHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG 73
+ SP P L + TY +++ C L G ++H++ + + + L MYV+ G
Sbjct: 92 NQSPKPDL-ELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCG 150
Query: 74 FLKDSSKLFDELPERNLVTWNVIITGLVK------------------------------- 102
L++ ++FD++ + WN+++ G K
Sbjct: 151 DLREGRRIFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDE 210
Query: 103 --------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRN 154
W +I GY S + L LF +M T+++V+ G +
Sbjct: 211 LGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGIN-TDLATMVSVVAGCSNTGMLLL 269
Query: 155 CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISG 214
+ +HGY K F ++ ++NCL+D Y+K G + SA ++FE ++ +++VSWT++I+G
Sbjct: 270 GRALHGYAIKASFGK-ELTLNNCLLDMYSKSGNLNSAIQVFE--TMGERSVVSWTSMIAG 326
Query: 215 FAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKFFDKMVEECEVLP 263
+A G+ +V F M+K G+ P+ + E G K ++E ++
Sbjct: 327 YAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACACTGLLENG-KDVHNYIKENKMQS 385
Query: 264 DIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
D+ L+D+ + G + A V S + Q+ ++V W T
Sbjct: 386 DLFVSNALMDMYAKCGSMGDAHSVFSEM--QVKDIVSWNT 423
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 34/203 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S T + ++ C +L+ G ++H + GF +V AL DMY+ G L + LF
Sbjct: 451 NSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLF 510
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +PE++LV+W V+I GY +EA+A F M EP E++ +++
Sbjct: 511 DMIPEKDLVSWTVMIA----------GYGMHGYGSEAIAAFNEMRN-SGIEPDEVSFISI 559
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN-----------CLIDTYAKCGCIFSA 191
L A +G + G+ F++ +N C++D A+ G + A
Sbjct: 560 LYACSHSGLL-----------DEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKA 608
Query: 192 SKLFEDTSVDRKNLVSWTTIISG 214
K + ++ + W ++ G
Sbjct: 609 YKFIKMMPIEPDATI-WGALLCG 630
>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
Length = 603
Score = 165 bits (417), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 158/293 (53%), Gaps = 26/293 (8%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D++T+ L++ C G QLH + K+G +VYV L +MY + +
Sbjct: 126 LPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARX 185
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD + E +V +N +ITG Y+R NR NEAL+LFR M +Y +P+EIT+L
Sbjct: 186 VFDRIVEPCVVCYNAMITG----------YARRNRPNEALSLFREMQG-KYLKPNEITLL 234
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+VL + G + + IH Y +K F + + V+ LID +AKCG + A +FE +
Sbjct: 235 SVLSSCALLGSLDLGKWIHKYAKKHSFCKY-VKVNTALIDMFAKCGSLDDAVSIFE--KM 291
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
K+ +W+ +I +A HG ++++ FERM+ ++P+ +G EEG
Sbjct: 292 RYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGR 351
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
K+F +MV + ++P IKHYG ++D+L AG LE A E +P T ++WR
Sbjct: 352 KYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLEDAYEFIDKLPISPTP-MLWR 403
>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 630
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 107/336 (31%), Positives = 173/336 (51%), Gaps = 49/336 (14%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
FL+Y QL I+ + FT+S ++++C T S G +H K G Y
Sbjct: 113 FLLYVQLLSSQINP--------NEFTFSSILKSCSTKS----GKLIHTHVLKFGLGLDPY 160
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIIT---------------------G 99
V T L D+Y G + + K+FD +PER+LV+ +IT
Sbjct: 161 VATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMCERD 220
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
+V W +IDGYS+ ++AL LF+++ A +P EIT++A L A + G + + IH
Sbjct: 221 IVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGRWIH 280
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
+ ++ V LID Y+KCG + A +F DT RK++V+W +I+G+AMHG
Sbjct: 281 VFVNSSRIR-LNVKVCTALIDMYSKCGSLEEAVLVFNDTP--RKDIVAWNAMITGYAMHG 337
Query: 220 MGKEAVENFERMQKV-GLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKH 267
++A+ F+ MQ + GL+P IG EG++ F+ M +E + P I+H
Sbjct: 338 YSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEH 397
Query: 268 YGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
YGCL+ +L RAG+L++A E+ + + + V+W +
Sbjct: 398 YGCLVSLLGRAGQLKRAYEIIKNMNME-ADSVLWSS 432
>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
Length = 541
Score = 164 bits (416), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 158/292 (54%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ FL+++ + S +LG +HA + G +V T+L MY S G + + LF
Sbjct: 63 DFHTFPFLLQSFASPSLLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLF 122
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFR--RMAACEYTEPSEITIL 140
+PERN+++W+ +I+GY R + EALALFR +M P+E T+
Sbjct: 123 AVMPERNVISWSC----------MINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMS 172
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
VL A + G + + + H Y +K G D+ + LID YAKCG + A+ +F +
Sbjct: 173 GVLAACGRLGALEHGKWAHAYIDKCGM-PVDVVLGTALIDMYAKCGSVEKATWVFSNLGP 231
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
+ K++++W+ +ISG AMHG+ +E V F +M G++PN + EG
Sbjct: 232 N-KDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVSEGK 290
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ +M E+ ++P I+HYGC++D+ RAGR+++A V +P + +V+VW
Sbjct: 291 DYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPME-PDVLVW 341
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/229 (24%), Positives = 97/229 (42%), Gaps = 40/229 (17%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
+++++Q + ++ P + FT S ++ C L G HA K G V +
Sbjct: 152 LFREMQMLGVNDVRP-----NEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLG 206
Query: 63 TALGDMYVSLGFLKDSSKLFDEL-PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALA 121
TAL DMY G ++ ++ +F L P ++++ W+ +I+GL + + E +
Sbjct: 207 TALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGL----------AMHGLAEECVG 256
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF----------- 170
LF +M + P+ +T LAV C +HG G +
Sbjct: 257 LFSKMIN-QGVRPNAVTFLAVF-----------CACVHGGLVSEGKDYLRRMTEDYSIIP 304
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
I C++D Y + G I A + + ++ LV W ++SG MHG
Sbjct: 305 TIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLV-WGALLSGSRMHG 352
>gi|224123726|ref|XP_002330193.1| predicted protein [Populus trichocarpa]
gi|222871649|gb|EEF08780.1| predicted protein [Populus trichocarpa]
Length = 485
Score = 164 bits (416), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 160/311 (51%), Gaps = 35/311 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +T + L++ C +L LG +H VGF+ + + ++Y S G ++D+ K+F
Sbjct: 106 DEYTLAPLLKACSSLGVLQLGKCMHKEVLVVGFEGFSAIRIGVIELYSSCGVMEDAEKVF 165
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
DE+ +R+++ WN++I G +V W +I ++ R +EAL
Sbjct: 166 DEMYQRDVIVWNLMIHGFCKRGDVDMGLCLFRQMRKRSVVSWNIMISCLAQSRRDSEALG 225
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M + +P E T++ VLP + G V + IH Y + G + V N L+D
Sbjct: 226 LFHDMLDWGF-KPDEATVVTVLPICARLGSVDVGKWIHSYAKSSGLYRDFVAVGNALVDF 284
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
Y K G +A ++F++ + RKN++SW T+ISG A++G G+ VE E M G++PN +
Sbjct: 285 YNKSGMFETARRVFDE--MPRKNVISWNTLISGLALNGNGELGVELLEEMMNEGVRPNDA 342
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+G E G + MVE ++ P ++HYGC++D+L R+G + +A ++
Sbjct: 343 TFVGVLSCCAHAGLFERGRELLASMVEHHQIEPKLEHYGCMVDLLGRSGCVREAYDLIRI 402
Query: 291 IPSQITNVVVW 301
+P N +W
Sbjct: 403 MPGGAPNAALW 413
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 83/200 (41%), Gaps = 16/200 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVSLGFLKDSSKL 81
D T ++ C L ++G +H+ G ++ V V AL D Y G + + ++
Sbjct: 238 DEATVVTVLPICARLGSVDVGKWIHSYAKSSGLYRDFVAVGNALVDFYNKSGMFETARRV 297
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNE-ALALFRRMAACEYTEPSEITIL 140
FDE+P +N+++WN +I+GL +N + E + L M E P++ T +
Sbjct: 298 FDEMPRKNVISWNTLISGLA-----------LNGNGELGVELLEEMMN-EGVRPNDATFV 345
Query: 141 AVLPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
VL G R +L+ E H C++D + GC+ A L
Sbjct: 346 GVLSCCAHAGLFERGRELLASMVEHHQIEPKLEHYG-CMVDLLGRSGCVREAYDLIRIMP 404
Query: 200 VDRKNLVSWTTIISGFAMHG 219
N W +++S HG
Sbjct: 405 GGAPNAALWGSLLSACRTHG 424
>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 163/312 (52%), Gaps = 38/312 (12%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVSLGFLKDSSKLF 82
SFT+S L + C +LG Q+HA +G F S +YV ++ D+YV GFL + K+F
Sbjct: 142 SFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVF 201
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
DE+ ER++V+W +I +V WT ++ GY++ R EAL
Sbjct: 202 DEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALE 261
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN-AFDIHVSNCLID 180
F++M E E+T+ V+ A + G V++ I E+ GF + ++ V + LID
Sbjct: 262 YFQKMQDVG-METDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALID 320
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
Y+KCG A K+FE + +N+ S++++I G+AMHG A++ F M K ++PN+
Sbjct: 321 MYSKCGSPDEAYKVFE--VMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNK 378
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
IG E+G + F KM + V P HY C++D+L RAG LE+A ++
Sbjct: 379 VTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVK 438
Query: 290 GIPSQITNVVVW 301
+P + N VW
Sbjct: 439 TMPME-PNGGVW 449
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 108/264 (40%), Gaps = 47/264 (17%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
Q+HA + G YV T L M + S L LV V WT
Sbjct: 60 QVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPL--------LVFGQVNYPNPFLWT 111
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
+I GY+ +E+ + RM + P T A+ A + + +H
Sbjct: 112 AMIRGYALQGLLSESTNFYTRMRR-DGVGPVSFTFSALFKACGAALNMDLGKQVHAQTIL 170
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS------------------------- 199
G A D++V N +ID Y KCG + A K+F++ S
Sbjct: 171 IGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASG 230
Query: 200 ----VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKM 255
+ K++V+WT +++G+A +G KEA+E F++MQ VG++ + G +
Sbjct: 231 LFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAG---------V 281
Query: 256 VEECEVLPDIKHYGCLIDILERAG 279
+ C L +KH + DI ER+G
Sbjct: 282 ISACAQLGAVKHANWIRDIAERSG 305
>gi|255558188|ref|XP_002520121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540613|gb|EEF42176.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 589
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 150/281 (53%), Gaps = 24/281 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+S L+ C + G QLH K+ + ++ + MY ++++ K+F
Sbjct: 201 DRFTFSGLLGICTSYDDFWRGMQLHCQMIKLNLEDSAFIGNVIITMYSKFNLIEEAEKVF 260
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ E++L++WN ++T + R AL +FR M + +P + T V
Sbjct: 261 GLIKEKDLISWNTLVTACC----FCKDHER------ALRVFRDMLDVCFVKPDDFTFAGV 310
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A +R+ + IHG+ R D+ VSN L++ YAKCG I ++ +F TS DR
Sbjct: 311 LAACAGLASIRHGKQIHGH-LIRTRQYQDVGVSNALVNMYAKCGSIKNSYDVFRRTS-DR 368
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
NLVSW TII+ F HG+G A+E+FE+M+ VG+ P+ +G EEG +
Sbjct: 369 -NLVSWNTIIAAFGNHGLGARALEHFEKMKTVGIHPDSVTFVGLLTACNHAGLVEEGQVY 427
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
F+ M E + P+I+H+ CLID+L RAGRL++AEE +P
Sbjct: 428 FNSMEEAYGIFPNIEHFSCLIDLLGRAGRLQEAEEYMEKLP 468
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 129/286 (45%), Gaps = 33/286 (11%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
L+ C + G LHA K G S + V+ + ++Y G + + ++FDE+ +RN
Sbjct: 9 LLHHCAKIKAFLHGLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDEMSDRN 68
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC--EYTEPSEITILAVLPAIW 147
LV+W+ II+ GY + + AL LF +M EY S I+ A L A+
Sbjct: 69 LVSWSAIIS----------GYDQTGQPLLALNLFSQMRIVPNEYVFASVISACASLTALS 118
Query: 148 KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
+ +V H K G + VSN LI Y KCG A L + N VS
Sbjct: 119 QGLQV------HAQSLKLGCVSVSF-VSNALISMYMKCGLCTDA--LLVHNVMSEPNAVS 169
Query: 208 WTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGL-----KFFDKMVEECEV- 261
+ +I+GF + ++ +E F+ M++ G P+R G G+ F+ M C++
Sbjct: 170 YNALIAGFVENQQPEKGIEAFKVMRQKGFAPDRFTFSGLLGICTSYDDFWRGMQLHCQMI 229
Query: 262 ---LPDIKHYG-CLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
L D G +I + + +E+AE+V I + +++ W T
Sbjct: 230 KLNLEDSAFIGNVIITMYSKFNLIEEAEKVFGLIKEK--DLISWNT 273
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 123/283 (43%), Gaps = 41/283 (14%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ + ++ +I C +L+ + G Q+HA K+G S +V+ AL MY+ G D+ +
Sbjct: 100 NEYVFASVISACASLTALSQGLQVHAQSLKLGCVSVSFVSNALISMYMKCGLCTDALLVH 159
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRR--MAACEYTEPSEITIL 140
+ + E N V++N +I G V+ + + EA + R+ A +T + I
Sbjct: 160 NVMSEPNAVSYNALIAGFVE-------NQQPEKGIEAFKVMRQKGFAPDRFTFSGLLGIC 212
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
W+ G +CQ+I E F + N +I Y+K I A K+F +
Sbjct: 213 TSYDDFWR-GMQLHCQMIKLNLEDSAF------IGNVIITMYSKFNLIEEAEKVF--GLI 263
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-LKPNRSWRIGEEGLKFFDKMVEEC 259
K+L+SW T+++ + A+ F M V +KP+ F ++ C
Sbjct: 264 KEKDLISWNTLVTACCFCKDHERALRVFRDMLDVCFVKPDDFT---------FAGVLAAC 314
Query: 260 EVLPDIKH----YGCLIDILERAGRLEQAEEVASGIPSQITNV 298
L I+H +G LI R Q ++V G+ + + N+
Sbjct: 315 AGLASIRHGKQIHGHLI-------RTRQYQDV--GVSNALVNM 348
>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Cucumis sativus]
Length = 650
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 103/312 (33%), Positives = 163/312 (52%), Gaps = 38/312 (12%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVSLGFLKDSSKLF 82
SFT+S L + C +LG Q+HA +G F S +YV ++ D+YV GFL + K+F
Sbjct: 142 SFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVF 201
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
DE+ ER++V+W +I +V WT ++ GY++ R EAL
Sbjct: 202 DEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALE 261
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN-AFDIHVSNCLID 180
F++M E E+T+ V+ A + G V++ I E+ GF + ++ V + LID
Sbjct: 262 YFQKMQDVG-METDEVTLAGVISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALID 320
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
Y+KCG A K+FE + +N+ S++++I G+AMHG A++ F M K ++PN+
Sbjct: 321 MYSKCGSPDEAYKVFE--VMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNK 378
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
IG E+G + F KM + V P HY C++D+L RAG LE+A ++
Sbjct: 379 VTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVK 438
Query: 290 GIPSQITNVVVW 301
+P + N VW
Sbjct: 439 TMPME-PNGGVW 449
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/264 (25%), Positives = 108/264 (40%), Gaps = 47/264 (17%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
Q+HA + G YV T L M + S L LV V WT
Sbjct: 60 QVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPL--------LVFGQVNYPNPFLWT 111
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
+I GY+ +E+ + RM + P T A+ A + + +H
Sbjct: 112 AMIRGYALQGLLSESTNFYTRMRR-DGVGPVSFTFSALFKACGAALNMDLGKQVHAQTIL 170
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS------------------------- 199
G A D++V N +ID Y KCG + A K+F++ S
Sbjct: 171 IGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASG 230
Query: 200 ----VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKM 255
+ K++V+WT +++G+A +G KEA+E F++MQ VG++ + G +
Sbjct: 231 LFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAG---------V 281
Query: 256 VEECEVLPDIKHYGCLIDILERAG 279
+ C L +KH + DI ER+G
Sbjct: 282 ISACAQLGAVKHANWIRDIAERSG 305
>gi|224082560|ref|XP_002306741.1| predicted protein [Populus trichocarpa]
gi|222856190|gb|EEE93737.1| predicted protein [Populus trichocarpa]
Length = 509
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 155/309 (50%), Gaps = 37/309 (11%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
TY + + L + G QLH K+G ++ ++ + +MYV+ GFL ++ ++FD
Sbjct: 98 LTYPSVFKAYAQLGLAHEGAQLHGRVIKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDG 157
Query: 85 LPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALALF 123
++VTWN +I GL K W +I GY R R EA+ LF
Sbjct: 158 ATGFDVVTWNTMIIGLAKCGEIDKSRRLFDKMLLRNTVSWNSMISGYVRKGRFFEAMELF 217
Query: 124 RRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183
RM E +PSE T++++L A G +R + IH Y K F A + V +ID Y+
Sbjct: 218 SRMQE-EGIKPSEFTMVSLLNACACLGALRQGEWIHDYIVKNNF-ALNSIVITAIIDMYS 275
Query: 184 KCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWR 243
KCG I A ++F+ S +K L W ++I G AM G G EAV F +++ LKP+
Sbjct: 276 KCGSIDKALQVFK--SAPKKGLSCWNSLILGLAMSGRGNEAVRLFSKLESSNLKPDHVSF 333
Query: 244 IG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
IG + +F M E ++ P IKHY C++D+L RAG LE+AEE+ +P
Sbjct: 334 IGVLTACNHAGMVDRAKDYFLLMSETYKIEPSIKHYSCMVDVLGRAGLLEEAEELIKSMP 393
Query: 293 SQITNVVVW 301
+ ++W
Sbjct: 394 VN-PDAIIW 401
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 118/293 (40%), Gaps = 56/293 (19%)
Query: 45 QLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKW 103
++HA K G + + + L G + + +F ++ NL WN II
Sbjct: 14 KIHAQLIKTGLAKDTIAASRVLAFCTSPAGDINYAYLVFTQIRNPNLFVWNTIIR----- 68
Query: 104 TGIIDGYSRMNRSNEALALFRRMA-ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHG-- 160
G+S+ + + A++LF M T+P +T +V A + G +HG
Sbjct: 69 -----GFSQSSTPHNAISLFIDMMFTSPTTQPQRLTYPSVFKAYAQLGLAHEGAQLHGRV 123
Query: 161 ------------------------YGEKR----GFNAFDIHVSNCLIDTYAKCGCIFSAS 192
GE + G FD+ N +I AKCG I +
Sbjct: 124 IKLGLENDQFIQNTILNMYVNCGFLGEAQRIFDGATGFDVVTWNTMIIGLAKCGEIDKSR 183
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG------- 245
+LF+ + +N VSW ++ISG+ G EA+E F RMQ+ G+KP+ +
Sbjct: 184 RLFDKMLL--RNTVSWNSMISGYVRKGRFFEAMELFSRMQEEGIKPSEFTMVSLLNACAC 241
Query: 246 ----EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
+G D +V+ L I +ID+ + G +++A +V P +
Sbjct: 242 LGALRQGEWIHDYIVKNNFALNSIV-ITAIIDMYSKCGSIDKALQVFKSAPKK 293
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 93/218 (42%), Gaps = 16/218 (7%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
FT L+ C L G +H K F + V TA+ DMY G + + ++F
Sbjct: 230 FTMVSLLNACACLGALRQGEWIHDYIVKNNFALNSIVITAIIDMYSKCGSIDKALQVFKS 289
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
P++ L WN +I GL + R NEA+ LF ++ + +P ++ + VL
Sbjct: 290 APKKGLSCWNSLILGL----------AMSGRGNEAVRLFSKLESSNL-KPDHVSFIGVLT 338
Query: 145 AIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
A G V R E H S C++D + G + A +L + V+
Sbjct: 339 ACNHAGMVDRAKDYFLLMSETYKIEPSIKHYS-CMVDVLGRAGLLEEAEELIKSMPVNPD 397
Query: 204 NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
++ W +++S +G + A + +R+ + L PN S
Sbjct: 398 AII-WGSLLSSCREYGNIEMAKQAAKRVNE--LDPNES 432
>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g37380, chloroplastic; Flags: Precursor
gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
[Arabidopsis thaliana]
Length = 632
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 109/336 (32%), Positives = 173/336 (51%), Gaps = 49/336 (14%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
FL+Y QL S + P + FT+S L+++C T S G +H K G Y
Sbjct: 115 FLLYVQLLS------SEINP--NEFTFSSLLKSCSTKS----GKLIHTHVLKFGLGIDPY 162
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIIT---------------------G 99
V T L D+Y G + + K+FD +PER+LV+ +IT
Sbjct: 163 VATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERD 222
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
+V W +IDGY++ N+AL LF+++ A +P EIT++A L A + G + + IH
Sbjct: 223 IVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIH 282
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
+ + ++ V LID Y+KCG + A +F DT RK++V+W +I+G+AMHG
Sbjct: 283 VFVKSSRIR-LNVKVCTGLIDMYSKCGSLEEAVLVFNDTP--RKDIVAWNAMIAGYAMHG 339
Query: 220 MGKEAVENFERMQKV-GLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKH 267
++A+ F MQ + GL+P IG EG++ F+ M +E + P I+H
Sbjct: 340 YSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEH 399
Query: 268 YGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
YGCL+ +L RAG+L++A E + + + V+W +
Sbjct: 400 YGCLVSLLGRAGQLKRAYETIKNM-NMDADSVLWSS 434
>gi|27545050|gb|AAO18456.1| hypothetical protein, 3'-partial [Oryza sativa Japonica Group]
Length = 382
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 144/271 (53%), Gaps = 28/271 (10%)
Query: 23 DSFTYSFLIRTCVTL-SYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG--FLKDSS 79
+ FT+ FL++ C L P++G Q HA K GF + YV+ L MY G FL D+
Sbjct: 125 NKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMYSCFGGGFLGDAR 184
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
+FD +P+ + VTW + +I GY R S++A+ LFR M A + E+T+
Sbjct: 185 NVFDRMPKESAVTW----------SAMIGGYVRGGLSSDAVDLFREMQA-NGVQADEVTV 233
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+ VL A G + + + + E+ G + + N LIDT AKCG + A +FE
Sbjct: 234 IGVLAAATDLGALELARWVRRFVEREGIGK-SVTLCNALIDTLAKCGDVDGAVAVFE--G 290
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
+ ++++VSWT++I AM G GKEAV FE M+ G+ P+ IG +EG
Sbjct: 291 MQQRSVVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEG 350
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
+FD M E + P I+HYGC++D+ RAG
Sbjct: 351 CGYFDAMKVEYGIEPKIEHYGCMVDMFGRAG 381
>gi|347954490|gb|AEP33745.1| chloroplast biogenesis 19, partial [Arabis hirsuta]
Length = 435
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 150/292 (51%), Gaps = 37/292 (12%)
Query: 42 LGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG- 99
LG LH K+G ++HV V TA+ MY G + + +FD + E+N VTWN +I G
Sbjct: 34 LGDLLHGYACKLGLDRAHVMVGTAILGMYSKRGRFRKARLVFDYMEEKNSVTWNTMIDGY 93
Query: 100 --------------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
L+ WT +I+G+ + EALA FR M +P + I
Sbjct: 94 MRNGQVDDAVKLFDEMPERDLISWTAMINGFVKKGFHEEALAWFREMQ-ISGVKPDYVAI 152
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+A L A G + IH Y + F ++ VSN LID Y +CGC+ A ++F+
Sbjct: 153 IAALAACTNLGALSFGLWIHRYVVSQDFKN-NVRVSNSLIDLYCRCGCVEFARQVFD--K 209
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
++++ +VSW ++I GFA +G E++ F +MQ+ G KPN G EEG
Sbjct: 210 MEKRTVVSWNSVIVGFAANGHAHESLVYFRKMQEEGFKPNAVTFTGALAACNHVGLVEEG 269
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
L++F M + + P I+HYGCL+D+ RAGRLE A +V +P + VV+
Sbjct: 270 LRYFQSMKRDYRISPRIEHYGCLVDLYSRAGRLEDALKVVQSMPMKPNEVVI 321
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 80/167 (47%), Gaps = 13/167 (7%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
+ C L + G +H F+++V V+ +L D+Y G ++ + ++FD++ +R +
Sbjct: 156 LAACTNLGALSFGLWIHRYVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTV 215
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
V+WN +I G++ ++E+L FR+M E +P+ +T L A G
Sbjct: 216 VSWNSVIV----------GFAANGHAHESLVYFRKMQE-EGFKPNAVTFTGALAACNHVG 264
Query: 151 EVRNCQLIHGYGEKRGFN-AFDIHVSNCLIDTYAKCGCIFSASKLFE 196
V L + KR + + I CL+D Y++ G + A K+ +
Sbjct: 265 LVEE-GLRYFQSMKRDYRISPRIEHYGCLVDLYSRAGRLEDALKVVQ 310
>gi|359493640|ref|XP_002282675.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Vitis vinifera]
Length = 464
Score = 164 bits (415), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 107/341 (31%), Positives = 163/341 (47%), Gaps = 68/341 (19%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
SFT+S L++ C +S G +H K GF SHV+V TAL D Y + G + ++ ++FD
Sbjct: 10 SFTFSSLVKACSLVSELGFGEAVHGHIWKYGFDSHVFVQTALVDFYGNAGKIVEARRVFD 69
Query: 84 ELPERNLVTWNVIIT---------------------GLVKWTGIIDGYSRM--------- 113
E+ ER++ W +I+ W +IDGYSR+
Sbjct: 70 EMSERDVFAWTTMISVHARTGDMSSARQLFDEMPVRNTASWNAMIDGYSRLRNVESAELL 129
Query: 114 -----NRS-----------------NEALALFRRMAACEYTEPSEITILAVLPAIWKNGE 151
NR EALA+F M +P E+T+ ++ A G
Sbjct: 130 FSQMPNRDIISWTTMIACYSQNKQFREALAVFNEMQT-NGIDPDEVTMATIISACAHLGA 188
Query: 152 VRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTI 211
+ + IH Y + GF+ D+++ + LID YAKCG + + +F + +KNL W +I
Sbjct: 189 LDLGKEIHLYAMEMGFD-LDVYIGSALIDMYAKCGSLDKSLVVF--FKLRKKNLFCWNSI 245
Query: 212 ISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECE 260
I G A+HG +EA+ F RMQ+ +KPN I EEG K F M +
Sbjct: 246 IEGLAVHGYAEEALAMFSRMQREKIKPNGVTFISVLGACTHAGLVEEGRKRFLSMSRDFS 305
Query: 261 VLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ P+I+HYGC++D+L +AG LE A E+ + + N V+W
Sbjct: 306 IPPEIEHYGCMVDLLGKAGLLEDALELVRSMRME-PNSVIW 345
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 94/203 (46%), Gaps = 26/203 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + +I C L +LG ++H ++GF VY+ +AL DMY G L S +F
Sbjct: 172 DEVTMATIISACAHLGALDLGKEIHLYAMEMGFDLDVYIGSALIDMYAKCGSLDKSLVVF 231
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+L ++NL WN II GL + GY+ EALA+F RM E +P+ +T ++V
Sbjct: 232 FKLRKKNLFCWNSIIEGLA-----VHGYAE-----EALAMFSRMQR-EKIKPNGVTFISV 280
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAF-------DIHVSNCLIDTYAKCGCIFSASKLF 195
L A G V G KR + +I C++D K G + A +L
Sbjct: 281 LGACTHAGLVEE-------GRKRFLSMSRDFSIPPEIEHYGCMVDLLGKAGLLEDALELV 333
Query: 196 EDTSVDRKNLVSWTTIISGFAMH 218
++ N V W ++ G +H
Sbjct: 334 RSMRME-PNSVIWGALLGGCKLH 355
>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 642
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 102/321 (31%), Positives = 158/321 (49%), Gaps = 37/321 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ +C L +LG + H + G + V + AL DMY+ G L+ + KLF
Sbjct: 207 DEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKLF 266
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
D + + +V+W ++ G +V W +I GY NR EALA
Sbjct: 267 DSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALA 326
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M A P E+T+++ L A + G + IH Y EK + ++ + LID
Sbjct: 327 LFNEMQAMN-INPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHEL-SLNVALGTALIDM 384
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG I A ++F++ + +N ++WT IISG A+HG A+ F M + P+
Sbjct: 385 YAKCGKITKAIQVFQE--LPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEV 442
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+G EEG K+F +M + + P +KHY C++D+L RAG LE+AEE+
Sbjct: 443 TFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKS 502
Query: 291 IPSQITNVVVWRTGFLRLLIN 311
+P + + VVW F I+
Sbjct: 503 MPIE-ADAVVWGALFFACRIH 522
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 90/325 (27%), Positives = 152/325 (46%), Gaps = 67/325 (20%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++TY L + C LS +G+++ +GF S ++V+ A+ + VS G L + K+F
Sbjct: 106 DNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMF 165
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D+ R+LV+WN +I+GY R + EAL +R M E +P E+T++ V
Sbjct: 166 DKSCVRDLVSWN----------SMINGYVRRGWAYEALNFYREMKV-EGIKPDEVTMIGV 214
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ + + ++ + H Y E+ G + ++N L+D Y KCG + SA KLF+ S+
Sbjct: 215 VSSCAQLEDLDLGRESHCYIEENGLK-LTVPLANALMDMYMKCGNLESARKLFD--SMTN 271
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP-----------NRSWRIGEEGLKF 251
K +VSWTT++ G+A G+ A + F+ M + P NR G+E L
Sbjct: 272 KTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANR----GKEALAL 327
Query: 252 FDKMVEECEVLPD----------------------IKHY-------------GCLIDILE 276
F++M + + PD I HY LID+
Sbjct: 328 FNEM-QAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYA 386
Query: 277 RAGRLEQAEEVASGIPSQITNVVVW 301
+ G++ +A +V +P + N + W
Sbjct: 387 KCGKITKAIQVFQELPGR--NSLTW 409
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 99/220 (45%), Gaps = 33/220 (15%)
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
W I G+ EA+ L++R+ C+ T+P T + A + +R I G+
Sbjct: 74 WNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHV 133
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
GF++ DI VSN +I CG + A K+F+ + V ++LVSW ++I+G+ G
Sbjct: 134 LHLGFDS-DIFVSNAVIHLLVSCGDLDGARKMFDKSCV--RDLVSWNSMINGYVRRGWAY 190
Query: 223 EAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDI---KHYGC--------- 270
EA+ + M+ G+KP+ IG +V C L D+ + C
Sbjct: 191 EALNFYREMKVEGIKPDEVTMIG---------VVSSCAQLEDLDLGRESHCYIEENGLKL 241
Query: 271 -------LIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
L+D+ + G LE A ++ + ++ +V W T
Sbjct: 242 TVPLANALMDMYMKCGNLESARKLFDSMTNK--TMVSWTT 279
>gi|10086462|gb|AAG12522.1|AC015446_3 Hypothetical Protein [Arabidopsis thaliana]
Length = 539
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 105/311 (33%), Positives = 170/311 (54%), Gaps = 38/311 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ T SF ++ C + QLH ++ G + + T L D Y G L + KLF
Sbjct: 108 DALTCSFTLKACARALCSSAMDQLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLF 167
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+P R++ +WN +I GLV NR++EA+ L++RM E SE+T++A
Sbjct: 168 DEMPVRDVASWNALIAGLVSG----------NRASEAMELYKRMET-EGIRRSEVTVVAA 216
Query: 143 LPAIWKNGEVRNCQLI-HGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G+V+ + I HGY ++ VSN ID Y+KCG + A ++FE +
Sbjct: 217 LGACSHLGDVKEGENIFHGYSND------NVIVSNAAIDMYSKCGFVDKAYQVFEQFT-G 269
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLK 250
+K++V+W T+I+GFA+HG A+E F++++ G+KP+ R + E GL
Sbjct: 270 KKSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYGLS 329
Query: 251 FFDKMVEECE-VLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLL 309
F+ M C+ V ++KHYGC++D+L RAGRL +A ++ + S I + V+W++ LL
Sbjct: 330 VFNNMA--CKGVERNMKHYGCVVDLLSRAGRLREAHDIICSM-SMIPDPVLWQS----LL 382
Query: 310 INSYFFSPITL 320
S +S + +
Sbjct: 383 GASEIYSDVEM 393
>gi|357125571|ref|XP_003564466.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 600
Score = 164 bits (414), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 109/337 (32%), Positives = 181/337 (53%), Gaps = 37/337 (10%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
FL+Y+++ +H+ SP P +SFT +F+++ C L G QLHA G + Y
Sbjct: 114 FLLYRRM----LHAGSPAP---NSFTLAFVLKACTALGE---GQQLHAQAFGHGLEPSPY 163
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
V T L ++Y + + +FD + E LV W+ +I GYSRM NEAL
Sbjct: 164 VQTGLLNLYARCEEVALARNVFDGMVEDK---------NLVAWSSMIGGYSRMGMVNEAL 214
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LFR M A P E+T+++V+ A K G + + +H + +++G D+ +S LID
Sbjct: 215 GLFRDMQAVG-VNPDEVTMVSVISACAKAGALDLGKWVHAFIDRKGIT-VDLELSTALID 272
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
YAKCG I A +F D+ V+R + +W+ +I G AMHG+ ++A+ F RM ++ ++PN
Sbjct: 273 MYAKCGLIERAKSVF-DSMVER-DTKAWSAMIVGLAMHGLAEDALGLFSRMLQLKVRPNN 330
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
+G ++G +++ M +E + +++YGC++D+L R+G L++A +
Sbjct: 331 VTFVGVLSACAHSGLVDDGRRYWCTM-QELGIEASMENYGCMVDLLCRSGLLDEAFSFVT 389
Query: 290 GIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLF 326
G+P N V+WR L +S + L S+RLF
Sbjct: 390 GMPIS-PNSVIWRN-LLVASKSSNRIDIVELASRRLF 424
>gi|297745510|emb|CBI40590.3| unnamed protein product [Vitis vinifera]
Length = 495
Score = 164 bits (414), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 103/318 (32%), Positives = 155/318 (48%), Gaps = 48/318 (15%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFT-------------YSFLIRTCVTLSYPNLGTQLHAV 49
+Y +L Q Y SH P F +T ++FL C +LS G LH
Sbjct: 49 LYNKLIQAY-SSHGPHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSHQQGRMLHTH 107
Query: 50 FSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK------- 102
F K GF V+ TAL DMY LG L + K FDE+ R++ TWN +I G +
Sbjct: 108 FVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGA 167
Query: 103 --------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148
WT +I GY++ + +AL++F M P+E+T+ +VLPA
Sbjct: 168 LELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACAN 227
Query: 149 NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSW 208
G + + I Y G+ +++VSN L++ YA+CG I A +FE+ R+NL SW
Sbjct: 228 LGALEVGERIEVYARGNGYFK-NLYVSNALLEMYARCGRIDKAWGVFEEID-GRRNLCSW 285
Query: 209 TTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVE 257
++I G A+HG EA+E F +M + G P+ +G EG FF+ M
Sbjct: 286 NSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVVEGQHFFESMER 345
Query: 258 ECEVLPDIKHYGCLIDIL 275
+ + P ++HYGC++D+L
Sbjct: 346 DFSIAPKLEHYGCMVDLL 363
>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 516
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 103/333 (30%), Positives = 165/333 (49%), Gaps = 45/333 (13%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
L+Y Q+ +H+ P +S+T+ FL++ C LS Q+HA K GF VY
Sbjct: 95 LLLYHQM----LHNSVP----HNSYTFPFLLKACSALSAFEETQQIHAHIIKRGFGLEVY 146
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK------------------ 102
+L +Y G ++ + LF++LP R++V+WN++I G +K
Sbjct: 147 ATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQAMPEKN 206
Query: 103 ---WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
WT +I G+ R+ EAL+L ++M +P IT+ L A G + + IH
Sbjct: 207 VISWTTMIVGFVRIGMHKEALSLLQQMLVAG-IKPDSITLSCSLSACAGLGALEQGKWIH 265
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
Y EK D + L D Y KCG + A +F + +++K + +WT II G A+HG
Sbjct: 266 TYIEKNEIK-IDPVLGCVLTDMYVKCGEMEKALLVF--SKLEKKCVCAWTAIIGGLAIHG 322
Query: 220 MGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKFFDKMVEECEVLPDIKHY 268
G+EA++ F +MQK G+ PN + EEG F+ M + P ++HY
Sbjct: 323 KGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSMEHY 382
Query: 269 GCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
GC++D++ RAG L++A E +P + N +W
Sbjct: 383 GCMVDLMGRAGLLKEAREFIESMPVK-PNAAIW 414
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 77/288 (26%), Positives = 117/288 (40%), Gaps = 67/288 (23%)
Query: 45 QLHAVFSKVG-FQSHVYVNTALGD-MYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
Q+H K G ++ + V+T L + L L + +FD + N V WN +
Sbjct: 28 QIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNTVIWNTM------ 81
Query: 103 WTGIIDGYSRMNRSNEALALFRRM-----AACEYTEPSEITILAVLPAIWKNGEVRNCQL 157
+ YS N AL L+ +M YT P + + L A Q
Sbjct: 82 ----LRAYSNSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKACSALSAF------EETQQ 131
Query: 158 IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED-------------------- 197
IH + KRGF +++ +N L+ YA G I SA LF
Sbjct: 132 IHAHIIKRGF-GLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFG 190
Query: 198 ---------TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-------S 241
++ KN++SWTT+I GF GM KEA+ ++M G+KP+ S
Sbjct: 191 NLDMAYKIFQAMPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLS 250
Query: 242 WRIG----EEGLKFFDKMVEECEVLPDIKHYGC-LIDILERAGRLEQA 284
G E+G K+ +E+ E+ D GC L D+ + G +E+A
Sbjct: 251 ACAGLGALEQG-KWIHTYIEKNEIKID-PVLGCVLTDMYVKCGEMEKA 296
>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Glycine max]
Length = 573
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 94/273 (34%), Positives = 151/273 (55%), Gaps = 26/273 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++T F+IRTC + +G +H V K G S +V +L DMY ++D+ +LF
Sbjct: 100 DNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVCASLVDMYAKCIVVEDAQRLF 159
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + ++LVTW V+I Y+ N + E+L LF RM E P ++ ++ V
Sbjct: 160 ERMLSKDLVTWTVMIGA----------YADCN-AYESLVLFDRMRE-EGVVPDKVAMVTV 207
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A K G + + + Y + GF + D+ + +ID YAKCG + SA ++F+ +
Sbjct: 208 VNACAKLGAMHRARFANDYIVRNGF-SLDVILGTAMIDMYAKCGSVESAREVFD--RMKE 264
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN++SW+ +I+ + HG GK+A++ F M + PNR + EEGL+F
Sbjct: 265 KNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRF 324
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
F+ M EE V PD+KHY C++D+L RAGRL++A
Sbjct: 325 FNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEA 357
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/272 (26%), Positives = 116/272 (42%), Gaps = 36/272 (13%)
Query: 49 VFSKVGFQSHVYVNTALGDMYVSLGFL---------KDSSKLFDELPERNLVTWNVIITG 99
VF +HV N L D+ ++ L D+ LFD L R+ TW+V++ G
Sbjct: 16 VFHIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGG 75
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
K Y A FR + C T P T+ V+ +++ ++IH
Sbjct: 76 FAKAGDHAGCY----------ATFRELLRCGVT-PDNYTLPFVIRTCRDRTDLQIGRVIH 124
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
K G + D V L+D YAKC + A +LFE + K+LV+WT +I +A
Sbjct: 125 DVVLKHGLLS-DHFVCASLVDMYAKCIVVEDAQRLFE--RMLSKDLVTWTVMIGAYA-DC 180
Query: 220 MGKEAVENFERMQKVGLKP---------NRSWRIGE-EGLKFFDKMVEECEVLPDIKHYG 269
E++ F+RM++ G+ P N ++G +F + + D+
Sbjct: 181 NAYESLVLFDRMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGT 240
Query: 270 CLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ID+ + G +E A EV + + NV+ W
Sbjct: 241 AMIDMYAKCGSVESAREVFDRMKEK--NVISW 270
>gi|357498595|ref|XP_003619586.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
gi|355494601|gb|AES75804.1| hypothetical protein MTR_6g059820 [Medicago truncatula]
Length = 528
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 114/363 (31%), Positives = 179/363 (49%), Gaps = 73/363 (20%)
Query: 8 QQIYIHSHSPLPPLFDSFTYSFLIRTCVTLS----------------YPN---------L 42
QI+ H HSP LF + +F + T YP+ L
Sbjct: 59 HQIFNHIHSPNIYLFTAIITAFSSQQHTTFKLFKTMLNSNIRPNNFIYPHVLKSVKERFL 118
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVS-LGFLKDSSKLFDELPERNLVTWNVIITGLV 101
+HA K GF ++ V T+L D Y LG L+D+ K+FDE+ ERN+V + V+++G +
Sbjct: 119 VDLVHAQIVKCGFLNYPVVETSLVDSYSKVLGGLRDAHKVFDEMSERNIVVFTVLVSGYL 178
Query: 102 K---------------------WTGIIDGYSRMNRSNEALALFRRM---------AACEY 131
+ W +I G ++ +E + LFR M C+
Sbjct: 179 RVGDVEKGLMVFDEMVDRDVPAWNAVISGCTQNGFFSEGIRLFREMVFAAGLGEGGFCKG 238
Query: 132 TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191
+P+++T++ VL A G ++ + IHGY + GF D VSN L+D Y KCG + A
Sbjct: 239 NKPNQVTVVCVLSACGHGGMLQLGKWIHGYVYRHGF-VVDSFVSNALVDMYGKCGSLELA 297
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG--LKPNRSWRIG---- 245
K+FE RK L SW ++I+ +A+HG ++A+ FE+M + G ++P+ IG
Sbjct: 298 RKVFEMDQ--RKGLTSWNSMINCYALHGKCEDAITFFEKMVECGGGVRPDEVTFIGLLNA 355
Query: 246 -------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNV 298
E+G +F+ M++E + P I HYGCLID+L RAG+ ++A +V G+ S +
Sbjct: 356 CTHGGLVEQGCGYFEMMIKEYGIEPQIAHYGCLIDLLGRAGQFDEAMDVVKGM-SMEPDE 414
Query: 299 VVW 301
VVW
Sbjct: 415 VVW 417
>gi|255543449|ref|XP_002512787.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547798|gb|EEF49290.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 480
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 92/315 (29%), Positives = 159/315 (50%), Gaps = 40/315 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ F+I+ C+ S + G ++H K GF +++ L D+Y G L + KLF
Sbjct: 129 DKFTFPFVIKACLDHSALDKGKEVHGFAIKTGFWKDTFLSNTLMDLYFKCGDLDYARKLF 188
Query: 83 DELPERNLVTWNVIITGL---------------------VKWTGIIDGYSRMNRSNEALA 121
D++ R++V+W + GL V WT +I+GY + R EA
Sbjct: 189 DKMAVRSVVSWTTFVAGLVACGELDTARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFE 248
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF+RM P+ T++ +L A + G + + IH Y + GF + + LID
Sbjct: 249 LFQRMQLAN-VRPNGFTLVGLLRACTELGSLELGRRIHEYALENGFKV-GVFLGTALIDM 306
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
Y+KCG I A K+FE+ + +K+L +W ++I+ +HG GKEA+ F +M++ ++P+
Sbjct: 307 YSKCGSIEDAKKVFEE--MQKKSLATWNSMITSLGVHGFGKEALALFAQMEEANVRPDAI 364
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+G E G ++F M E + P ++HY C+I++ RA L + E+ +
Sbjct: 365 TFVGVLFACVNTNNVEAGYRYFKYMTEHYGITPMLEHYTCMIELYTRAAMLNEVSELVNS 424
Query: 291 IPSQITN----VVVW 301
+P ++ + +VW
Sbjct: 425 MPMKLNSNPAAALVW 439
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 118/282 (41%), Gaps = 53/282 (18%)
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD++ + TWN +I Y+ S +AL L+ M CE P + T
Sbjct: 86 IFDQIQNPHTFTWNFMIRA----------YNYNGNSQQALLLYNLMI-CEGFSPDKFTFP 134
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
V+ A + + + +HG+ K GF D +SN L+D Y KCG + A KLF+ +V
Sbjct: 135 FVIKACLDHSALDKGKEVHGFAIKTGFWK-DTFLSNTLMDLYFKCGDLDYARKLFDKMAV 193
Query: 201 DR-----------------------------KNLVSWTTIISGFAMHGMGKEAVENFERM 231
+N+VSWT +I+G+ + +EA E F+RM
Sbjct: 194 RSVVSWTTFVAGLVACGELDTARAAFDEMPMRNVVSWTAMINGYVKNQRPQEAFELFQRM 253
Query: 232 QKVGLKPNRSWRIG------EEGLKFFDKMVEECEVLPDIK----HYGCLIDILERAGRL 281
Q ++PN +G E G + + E + K LID+ + G +
Sbjct: 254 QLANVRPNGFTLVGLLRACTELGSLELGRRIHEYALENGFKVGVFLGTALIDMYSKCGSI 313
Query: 282 EQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQ 323
E A++V + Q ++ W + L ++ + + L +Q
Sbjct: 314 EDAKKVFEEM--QKKSLATWNSMITSLGVHGFGKEALALFAQ 353
>gi|334183024|ref|NP_174678.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806500|sp|Q9FX24.2|PPR71_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g34160
gi|332193557|gb|AEE31678.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 581
Score = 163 bits (413), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 105/311 (33%), Positives = 170/311 (54%), Gaps = 38/311 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ T SF ++ C + QLH ++ G + + T L D Y G L + KLF
Sbjct: 108 DALTCSFTLKACARALCSSAMDQLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLF 167
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+P R++ +WN +I GLV NR++EA+ L++RM E SE+T++A
Sbjct: 168 DEMPVRDVASWNALIAGLVSG----------NRASEAMELYKRMET-EGIRRSEVTVVAA 216
Query: 143 LPAIWKNGEVRNCQLI-HGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G+V+ + I HGY ++ VSN ID Y+KCG + A ++FE +
Sbjct: 217 LGACSHLGDVKEGENIFHGYSND------NVIVSNAAIDMYSKCGFVDKAYQVFEQFT-G 269
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLK 250
+K++V+W T+I+GFA+HG A+E F++++ G+KP+ R + E GL
Sbjct: 270 KKSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYGLS 329
Query: 251 FFDKMVEECE-VLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLL 309
F+ M C+ V ++KHYGC++D+L RAGRL +A ++ + S I + V+W++ LL
Sbjct: 330 VFNNMA--CKGVERNMKHYGCVVDLLSRAGRLREAHDIICSM-SMIPDPVLWQS----LL 382
Query: 310 INSYFFSPITL 320
S +S + +
Sbjct: 383 GASEIYSDVEM 393
>gi|255581953|ref|XP_002531775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528611|gb|EEF30631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 498
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/311 (31%), Positives = 160/311 (51%), Gaps = 37/311 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++TY+F+++ C G Q+H K G + +++++L MY S G + ++ +
Sbjct: 86 DNYTYTFVLKACSNQKALPEGKQVHCQIIKAGISPNTHIHSSLIHMYTSSGSIVEAECVL 145
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
E E N + N +I+G + W+ II G ++ EALA
Sbjct: 146 REFSEENTLAKNSMISGYLSKGHVDKARAMFDQMKAKDVASWSAIITGCTKNGMHTEALA 205
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M +T P+E ++++L A G + + IH Y ++ G + I +S LID
Sbjct: 206 LFEDMMV-SHTLPNESALVSLLSACAHLGALHQGRWIHAYIDRIGAD-MSIRLSTALIDM 263
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG I S K F + R+++V+W IISGFA++G K+ E FE M G+ PN
Sbjct: 264 YAKCGDIQSGYKFFR--KMPRRDIVTWGAIISGFAIYGQAKKCFELFEEMLADGIYPNGV 321
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+ EEG +F++M+ + + P I+HYGC++D+L RAGRL++AEE
Sbjct: 322 IFVAILSACSHAGYVEEGKLYFNQMMVDLGIRPSIEHYGCMVDLLGRAGRLKEAEEFIIS 381
Query: 291 IPSQITNVVVW 301
+P + N V+W
Sbjct: 382 MPEK-PNSVIW 391
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 83/218 (38%), Gaps = 24/218 (11%)
Query: 45 QLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKW 103
QLHA F G H L + YV++ + + +F+ +P ++ +N +I GL+
Sbjct: 6 QLHAQFVVSGLLNHHSLCGRRLLESYVTMSEISYARSIFERIPYLDVFVYNTMIRGLMLG 65
Query: 104 TGIIDGYSR--------MNRSNEALALFRRMAACEYTEP--SEITILAVLPAIWKNGEVR 153
D + N + + + P ++ + I N +
Sbjct: 66 KRPYDSLLLFNELLLGCLKPDNYTYTFVLKACSNQKALPEGKQVHCQIIKAGISPNTHIH 125
Query: 154 NCQLIHGYGEK----------RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
+ LIH Y R F+ + N +I Y G + A +F+ K
Sbjct: 126 S-SLIHMYTSSGSIVEAECVLREFSEENTLAKNSMISGYLSKGHVDKARAMFDQMKA--K 182
Query: 204 NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
++ SW+ II+G +GM EA+ FE M PN S
Sbjct: 183 DVASWSAIITGCTKNGMHTEALALFEDMMVSHTLPNES 220
>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g18750, chloroplastic; Flags: Precursor
gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 151/281 (53%), Gaps = 24/281 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +T + ++ C + G ++H + ++V+ AL DMY G ++++ +F
Sbjct: 396 DVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVF 455
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E+ +++++WN II G YS+ +NEAL+LF + + P E T+ V
Sbjct: 456 SEMRVKDIISWNTIIGG----------YSKNCYANEALSLFNLLLEEKRFSPDERTVACV 505
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LPA + IHGY + G+ + D HV+N L+D YAKCG + A LF+D +
Sbjct: 506 LPACASLSAFDKGREIHGYIMRNGYFS-DRHVANSLVDMYAKCGALLLAHMLFDD--IAS 562
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
K+LVSWT +I+G+ MHG GKEA+ F +M++ G++ + + +EG +F
Sbjct: 563 KDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRF 622
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
F+ M EC++ P ++HY C++D+L R G L +A +P
Sbjct: 623 FNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMP 663
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 151/293 (51%), Gaps = 28/293 (9%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
DS+T+S + ++ +L + G QLH K GF V +L Y+ + + K+
Sbjct: 193 MDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKV 252
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FDE+ ER++++WN II+GY + + L++F +M E TI++
Sbjct: 253 FDEMTERDVISWN----------SIINGYVSNGLAEKGLSVFVQMLV-SGIEIDLATIVS 301
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
V + + + +H G K F+ D N L+D Y+KCG + SA +F + S D
Sbjct: 302 VFAGCADSRLISLGRAVHSIGVKACFSRED-RFCNTLLDMYSKCGDLDSAKAVFREMS-D 359
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLK 250
R ++VS+T++I+G+A G+ EAV+ FE M++ G+ P+ +R+ +EG K
Sbjct: 360 R-SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEG-K 417
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ ++E ++ DI L+D+ + G +++AE V S + ++ +++ W T
Sbjct: 418 RVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEM--RVKDIISWNT 468
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 101/216 (46%), Gaps = 14/216 (6%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D T +++ C G ++ GF + + L MY + G LK++S++
Sbjct: 92 IDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRV 151
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FDE+ + WN+++ L K +G G ++ LF++M + E T
Sbjct: 152 FDEVKIEKALFWNILMNELAK-SGDFSG---------SIGLFKKMMS-SGVEMDSYTFSC 200
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
V + V + +HG+ K GF + V N L+ Y K + SA K+F++ +
Sbjct: 201 VSKSFSSLRSVHGGEQLHGFILKSGFGERN-SVGNSLVAFYLKNQRVDSARKVFDEMT-- 257
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
++++SW +II+G+ +G+ ++ + F +M G++
Sbjct: 258 ERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIE 293
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 36/208 (17%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + ++ C +LS + G ++H + G+ S +V +L DMY G L + LF
Sbjct: 498 DERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLF 557
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++ ++LV+W V+I GY EA+ALF +M E EI+ +++
Sbjct: 558 DDIASKDLVSWTVMIA----------GYGMHGFGKEAIALFNQMRQAG-IEADEISFVSL 606
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDI------------HVSNCLIDTYAKCGCIFS 190
L A +G V G+ F+I H + C++D A+ G +
Sbjct: 607 LYACSHSGLV-----------DEGWRFFNIMRHECKIEPTVEHYA-CIVDMLARTGDLIK 654
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMH 218
A + E+ + + W ++ G +H
Sbjct: 655 AYRFIENMPIPPDATI-WGALLCGCRIH 681
>gi|357439099|ref|XP_003589826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478874|gb|AES60077.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 526
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/321 (33%), Positives = 163/321 (50%), Gaps = 54/321 (16%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDM------------- 68
FDS++ +++++ V L+ LG Q+H V G +V V ++L M
Sbjct: 110 FDSYSLPYVLKSVVCLNDFGLGKQIHCVGVVTGLDKNVSVCSSLIQMYSCYDVCSARKLF 169
Query: 69 ----------------YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSR 112
YV +G + ++ KLFD + ER+ + WT +I GY++
Sbjct: 170 DEFGGNGCVLNAMIVAYVKVGDVSNARKLFDSMLERD--------KDVFSWTAMISGYTQ 221
Query: 113 MNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDI 172
+ NEA+ LFRRM E +P EI ILAVL A G + + IH Y EK + +
Sbjct: 222 AHNPNEAIKLFRRM-QLENVKPDEIAILAVLSACADLGALHLGEWIHNYIEKHKLSKI-V 279
Query: 173 HVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQ 232
+ N LID YAK G I A +LFE+ + K +++WTT+I+G A+HG+GKEA+ F M+
Sbjct: 280 PLYNSLIDMYAKSGNIRKALELFEN--MKHKTIITWTTMIAGLALHGLGKEALRVFSCME 337
Query: 233 KVG-LKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGR 280
K +KPN I E G +F M + P I+HYGC+ID+L RAG
Sbjct: 338 KEDRVKPNEVTFIAILSACSHVGLVELGRDYFTSMRSRYGIEPKIEHYGCMIDLLGRAGH 397
Query: 281 LEQAEEVASGIPSQITNVVVW 301
L++A+E+ +P + N +W
Sbjct: 398 LQEAKEMVLRMPFE-ANAAIW 417
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 20/144 (13%)
Query: 174 VSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
V N +I Y K G + +A KLF+ K++ SWT +ISG+ EA++ F RMQ
Sbjct: 178 VLNAMIVAYVKVGDVSNARKLFDSMLERDKDVFSWTAMISGYTQAHNPNEAIKLFRRMQL 237
Query: 234 VGLKPNR--------------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
+KP+ + +GE + +E+ ++ + Y LID+ ++G
Sbjct: 238 ENVKPDEIAILAVLSACADLGALHLGE----WIHNYIEKHKLSKIVPLYNSLIDMYAKSG 293
Query: 280 RLEQAEEVASGIPSQITNVVVWRT 303
+ +A E+ + + ++ W T
Sbjct: 294 NIRKALELFENMKHK--TIITWTT 315
>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
Length = 720
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 151/281 (53%), Gaps = 24/281 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +T + ++ C + G ++H + ++V+ AL DMY G ++++ +F
Sbjct: 245 DVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVF 304
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E+ +++++WN II G YS+ +NEAL+LF + + P E T+ V
Sbjct: 305 SEMRVKDIISWNTIIGG----------YSKNCYANEALSLFNLLLEEKRFSPDERTVACV 354
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LPA + IHGY + G+ + D HV+N L+D YAKCG + A LF+D +
Sbjct: 355 LPACASLSAFDKGREIHGYIMRNGYFS-DRHVANSLVDMYAKCGALLLAHMLFDD--IAS 411
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
K+LVSWT +I+G+ MHG GKEA+ F +M++ G++ + + +EG +F
Sbjct: 412 KDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRF 471
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
F+ M EC++ P ++HY C++D+L R G L +A +P
Sbjct: 472 FNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMP 512
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 151/293 (51%), Gaps = 28/293 (9%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
DS+T+S + ++ +L + G QLH K GF V +L Y+ + + K+
Sbjct: 42 MDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKV 101
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FDE+ ER++++WN II+GY + + L++F +M E TI++
Sbjct: 102 FDEMTERDVISWN----------SIINGYVSNGLAEKGLSVFVQMLV-SGIEIDLATIVS 150
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
V + + + +H G K F+ D N L+D Y+KCG + SA +F + S D
Sbjct: 151 VFAGCADSRLISLGRAVHSIGVKACFSRED-RFCNTLLDMYSKCGDLDSAKAVFREMS-D 208
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLK 250
R ++VS+T++I+G+A G+ EAV+ FE M++ G+ P+ +R+ +EG K
Sbjct: 209 R-SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEG-K 266
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ ++E ++ DI L+D+ + G +++AE V S + ++ +++ W T
Sbjct: 267 RVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEM--RVKDIISWNT 317
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 36/208 (17%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + ++ C +LS + G ++H + G+ S +V +L DMY G L + LF
Sbjct: 347 DERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLF 406
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++ ++LV+W V+I GY EA+ALF +M E EI+ +++
Sbjct: 407 DDIASKDLVSWTVMIA----------GYGMHGFGKEAIALFNQMRQAG-IEADEISFVSL 455
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDI------------HVSNCLIDTYAKCGCIFS 190
L A +G V G+ F+I H + C++D A+ G +
Sbjct: 456 LYACSHSGLV-----------DEGWRFFNIMRHECKIEPTVEHYA-CIVDMLARTGDLIK 503
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMH 218
A + E+ + + W ++ G +H
Sbjct: 504 AYRFIENMPIPPDATI-WGALLCGCRIH 530
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 76/156 (48%), Gaps = 14/156 (8%)
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FDE+ + WN+++ L K +G G ++ LF++M + E T
Sbjct: 1 FDEVKIEKALFWNILMNELAK-SGDFSG---------SIGLFKKMMS-SGVEMDSYTFSC 49
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
V + V + +HG+ K GF + V N L+ Y K + SA K+F++ +
Sbjct: 50 VSKSFSSLRSVHGGEQLHGFILKSGFGERN-SVGNSLVAFYLKNQRVDSARKVFDEMT-- 106
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
++++SW +II+G+ +G+ ++ + F +M G++
Sbjct: 107 ERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIE 142
>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 99/305 (32%), Positives = 165/305 (54%), Gaps = 32/305 (10%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
L+YK++++ SP D T + L+ C L +G +LH+ ++ +
Sbjct: 165 LLLYKKMEE---DGFSP-----DEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAV 216
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
+ +AL +MY G LK + ++FD+L ++++ W+ +I G VK NRS EAL
Sbjct: 217 LGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVK----------NNRSTEAL 266
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LFR +A P+E+TILAV+ A + G++ + +H Y R + ++N LID
Sbjct: 267 QLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDY-ITRTQKGHSVSLNNSLID 325
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
++KCG I +A ++F+ S+ K+L+SW ++++GFA+HG+G+EA+ F MQ L+P+
Sbjct: 326 MFSKCGDIDAAKRIFD--SMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDE 383
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
IG +EG K F ++ V +HYGC++D+L RAG L +A E
Sbjct: 384 ITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIR 443
Query: 290 GIPSQ 294
+P Q
Sbjct: 444 VMPLQ 448
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 109/218 (50%), Gaps = 15/218 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ L++ C L +G LH K S +Y+ T L +MY + G LK + LF
Sbjct: 78 DRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLF 137
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + RN V WT +I GY + + NEAL L+++M ++ P E+T+ +
Sbjct: 138 ERMGHRNKVV----------WTSMISGYMKNHCPNEALLLYKKMEEDGFS-PDEVTMATL 186
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A + ++ +H + + + + + L++ YAKCG + +A ++F+ S
Sbjct: 187 VSACAELKDLGVGMKLHSHIREMDMKICAV-LGSALVNMYAKCGDLKTARQVFDKLS--D 243
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENF-ERMQKVGLKPN 239
K++ +W+ +I G+ + EA++ F E ++PN
Sbjct: 244 KDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPN 281
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 13/159 (8%)
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F E +++TWN ++ V S M R AL + M P T
Sbjct: 34 VFAHTRELDVLTWNSMLRAFVN--------SNMPR--RALQSYTEMLERSRNVPDRFTFP 83
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
++L E + +++HG K ++ D+++ L++ YA CG + SA LFE +
Sbjct: 84 SLLKGCALLLEFKVGKVLHGQVVKYMLHS-DLYIETTLLNMYAACGDLKSARFLFE--RM 140
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+N V WT++ISG+ + EA+ +++M++ G P+
Sbjct: 141 GHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPD 179
>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 716
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/294 (33%), Positives = 161/294 (54%), Gaps = 26/294 (8%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L + FT++ ++++C ++ LG Q+H KVG +V+V+ AL D+Y G L +S K
Sbjct: 240 LPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMK 299
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
LF ELP RN VTWN +I GY + ++AL+L++ M C+ + SE+T
Sbjct: 300 LFMELPNRNEVTWNTMIV----------GYVQSGDGDKALSLYKNMLECQ-VQASEVTYS 348
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+VL A + IH K ++ D+ V N LID YAKCG I +A +F+ S
Sbjct: 349 SVLRACASLAAMELGTQIHSLSLKTIYDK-DVVVGNALIDMYAKCGSIKNARLVFDMLS- 406
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
++ +SW +ISG++MHG+ EA++ F+ MQ+ PN+ + + G
Sbjct: 407 -ERDEISWNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQ 465
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+F MV++ + P ++HY C++ +L R+G L++A ++ IP + NV VWR
Sbjct: 466 NYFKSMVQDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLE-PNVKVWRA 518
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 115/212 (54%), Gaps = 20/212 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT++ +++ C+ L ++G +H K ++ +YV L D+Y G D ++F
Sbjct: 141 NHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVF 200
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+P+ +++ W+ +I+ Y++ N+S EA+ LF +M + P++ T +V
Sbjct: 201 EEMPKHDVIPWSFMIS----------RYAQSNQSREAVELFGQMRR-AFVLPNQFTFASV 249
Query: 143 LPAIWKNGEVRNCQL---IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
L + + N QL +H + K G + ++ VSN L+D YAKCG + ++ KLF +
Sbjct: 250 LQSC---ASIENLQLGKQVHCHVLKVGLDG-NVFVSNALMDVYAKCGRLDNSMKLFME-- 303
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
+ +N V+W T+I G+ G G +A+ ++ M
Sbjct: 304 LPNRNEVTWNTMIVGYVQSGDGDKALSLYKNM 335
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 138/294 (46%), Gaps = 30/294 (10%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
+ F ++ +++ V++ L LHA K+G +S+ +V TAL D Y G + + +
Sbjct: 39 LNPFVFTTILKLLVSVECAELAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQA 98
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + +++V+ WTG++ Y+ +R ++L LF M + P+ T
Sbjct: 99 FDAIACKDMVS----------WTGMVACYAENDRFQDSLQLFAEMRMVGFN-PNHFTFAG 147
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL A + +HG K + D++V L+D Y K G ++FE+ +
Sbjct: 148 VLKACIGLEAFSVGKSVHGCVLKTCYE-MDLYVGVGLLDLYTKFGDANDVLRVFEE--MP 204
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-------SWRIGEEGLKFFDK 254
+ +++ W+ +IS +A +EAVE F +M++ + PN+ E L+ +
Sbjct: 205 KHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQ 264
Query: 255 MVEECEVLP-----DIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ C VL ++ L+D+ + GRL+ + ++ +P++ N V W T
Sbjct: 265 V--HCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNR--NEVTWNT 314
>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 734
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 100/281 (35%), Positives = 153/281 (54%), Gaps = 27/281 (9%)
Query: 18 LPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD 77
+PP + T ++ C + +LG + + G S++ + AL DMY G L+
Sbjct: 257 VPP--NESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQT 314
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
+ +LFD++ ER++++WNV+I G Y+ M EALALFR M A EP+EI
Sbjct: 315 ARELFDDMLERDVISWNVMIGG----------YTHMCSYKEALALFREMLASG-VEPTEI 363
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
T L++LP+ G + + IH Y K FN+ +S LID YAKCG I +A ++F+
Sbjct: 364 TFLSILPSCAHLGAIDLGKWIHAYINKN-FNSVSTSLSTSLIDLYAKCGNIVAARQVFDG 422
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------E 246
+ K+L SW +I G AMHG +A E F +M G++PN +G +
Sbjct: 423 MKI--KSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVD 480
Query: 247 EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
G +FF MV++ ++ P +HYGC+ID+L RAG E+AE +
Sbjct: 481 LGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESL 521
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 128/237 (54%), Gaps = 25/237 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S+T+ FL+++C L+ + G Q+HA K+GF S V+++T+L +MY G + ++ +F
Sbjct: 128 NSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVF 187
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
D+ R+ +++ +I G +V W +I GY++M RS EAL
Sbjct: 188 DQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALL 247
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M P+E TI++VL A ++ + + + E RG + ++ + N LID
Sbjct: 248 LFEDMRKAN-VPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCS-NLKLVNALIDM 305
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
Y+KCG + +A +LF+D + ++++SW +I G+ KEA+ F M G++P
Sbjct: 306 YSKCGDLQTARELFDD--MLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEP 360
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/299 (25%), Positives = 127/299 (42%), Gaps = 57/299 (19%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYV--SLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
Q+HA K G + ++ + L + G + + LF+ + E NL WN +I GL
Sbjct: 47 QIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGL-- 104
Query: 103 WTGIIDGYSRMNRSNE-ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
M+ S AL F RM EP+ T +L + K + IH +
Sbjct: 105 ---------SMSLSPALALVFFVRMIYSG-VEPNSYTFPFLLKSCAKLASAHEGKQIHAH 154
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS-------------------VDR 202
K GF + D+ + LI+ YA+ G + +A +F+ ++ +DR
Sbjct: 155 VLKLGFVS-DVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDR 213
Query: 203 ----------KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG------- 245
K++VSW +I+G+A G KEA+ FE M+K + PN S +
Sbjct: 214 ARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQ 273
Query: 246 EEGLKFFDKM---VEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
L + M +E+ + ++K LID+ + G L+ A E+ + + +V+ W
Sbjct: 274 SNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLER--DVISW 330
>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Cucumis sativus]
Length = 604
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 161/294 (54%), Gaps = 26/294 (8%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D +T+S L++ C + G LH K+G ++Y+ L +MY + +
Sbjct: 127 LPDDYTFSSLLKACASSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARG 186
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FDE+ + +V++N IIT GY+R ++ NEAL+LFR + A EP+++T+L
Sbjct: 187 VFDEMEQPCIVSYNAIIT----------GYARSSQPNEALSLFRELQASN-IEPTDVTML 235
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+V+ + G + + IH Y +K+GF+ + + V+ LID +AKCG + A +FE V
Sbjct: 236 SVIMSCALLGALDLGKWIHEYVKKKGFDKY-VKVNTALIDMFAKCGSLTDAISIFEGMRV 294
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
++ +W+ +I FA HG G +A+ FE M++ G++P+ +G E+G
Sbjct: 295 --RDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGR 352
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+F M + + P IKHYGC++D+L RAG L++A + + T ++WRT
Sbjct: 353 GYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATP-ILWRT 405
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 87/205 (42%), Gaps = 25/205 (12%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
+I +C L +LG +H K GF +V VNTAL DM+ G L D+ +F+ + R+
Sbjct: 237 VIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRD 296
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
W+ +I DG +A+++F M E P EIT L +L A
Sbjct: 297 TQAWSAMIVAFATHG---DGL-------KAISMFEEMKR-EGVRPDEITFLGLLYACSHA 345
Query: 150 GEVRNCQ-----LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
G V + + YG G + C++D + G + A + + +
Sbjct: 346 GLVEQGRGYFYSMSKTYGITPGIKHY-----GCMVDLLGRAGHLDEAYNFVDKLEI-KAT 399
Query: 205 LVSWTTIISGFAMHG---MGKEAVE 226
+ W T++S + HG M K +E
Sbjct: 400 PILWRTLLSACSTHGNVEMAKRVIE 424
>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 537
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/314 (33%), Positives = 160/314 (50%), Gaps = 39/314 (12%)
Query: 11 YIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV 70
Y+ S LP +++T+SFL++ C LS + G LHA ++G++++ +V L +Y
Sbjct: 103 YMLSTGFLP---NNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYA 159
Query: 71 SLGFLKDSSKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDG 109
S + + +LFD R++VTW +I G K W+ +I G
Sbjct: 160 SCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITG 219
Query: 110 YSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNA 169
Y+++ EAL LF M + P+ I+ L A G + + IH Y + R
Sbjct: 220 YAQIGLFREALELFNDMQIAGF-RPNHGAIVGALTACAFLGALDQGRWIHAYVD-RNRMV 277
Query: 170 FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFE 229
D + LID YAKCGC+ +A ++F D +DR ++ ++T++ISG A HG A+E F
Sbjct: 278 LDRILGTALIDMYAKCGCVETACRVF-DEMLDR-DVFAFTSLISGLANHGHSATAIEMFT 335
Query: 230 RMQKVGLKPNR---------SWRIG--EEGLKFFDKMVEECEVLPDIKHYGCLIDILERA 278
RMQ G+ PN R+G EEGL+ F M + P ++HYGCL+D+L RA
Sbjct: 336 RMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRA 395
Query: 279 GRLEQAEEVASGIP 292
G LE A+ V +P
Sbjct: 396 GMLEDAKRVVREMP 409
>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Cucumis sativus]
Length = 926
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 153/290 (52%), Gaps = 27/290 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D + + ++ C G +H + +++ +V+ AL DMY G +KD+ +F
Sbjct: 453 DVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVF 512
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ ++++++WN +I GY++ + NEAL LF M ++P T+ +
Sbjct: 513 SHMKKKDVISWNTMI----------GGYTKNSLPNEALTLFAEMQ--RESKPDGTTVACI 560
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LPA + + IHGY + G++ D +V+N ++D Y KCG + A LF+ +
Sbjct: 561 LPACASLAALDKGREIHGYALRNGYSE-DKYVTNAVVDMYVKCGLLVLARSLFD--MIPN 617
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
K+LVSWT +I+G+ MHG G EA+ F +M+ G++P+ I +EG K
Sbjct: 618 KDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKI 677
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F+ M +EC++ P+++HY C++D+L R G L +A + +P + + +W
Sbjct: 678 FNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIK-PDATIW 726
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 117/217 (53%), Gaps = 13/217 (5%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S+T+S +++ ++ G Q+H + K+GF S+ V +L Y ++ + KLF
Sbjct: 250 NSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLF 309
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DEL +R++++WN +I+G VK G+ D + +F +M + T++ V
Sbjct: 310 DELTDRDVISWNSMISGYVK-NGLDD---------RGIEIFIKMLVFG-VDIDLATMVNV 358
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
A G + +++H Y K ++ +N L+D Y+KCG + SA ++FE +D
Sbjct: 359 FVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFE--RMDE 416
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
K +VSWT++I+G+ G+ A++ F+ M+ G+ P+
Sbjct: 417 KTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPD 453
Score = 90.9 bits (224), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 101/204 (49%), Gaps = 19/204 (9%)
Query: 33 TCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLV 91
C + LG LH+ K V N L DMY G L + ++F+ + E+ +V
Sbjct: 361 ACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVV 420
Query: 92 TWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGE 151
+W +ITG V+ G+ DG A+ LF M + P + ++L A NG
Sbjct: 421 SWTSMITGYVR-EGLSDG---------AIKLFDEMKS-RGVVPDVYAVTSILNACAINGN 469
Query: 152 VRNCQLIHGYGEKRGF--NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWT 209
+++ +++H Y + N+F VSN L D YAKCG + A +F + + +K+++SW
Sbjct: 470 LKSGKIVHDYIRENNLETNSF---VSNALTDMYAKCGSMKDAHDVF--SHMKKKDVISWN 524
Query: 210 TIISGFAMHGMGKEAVENFERMQK 233
T+I G+ + + EA+ F MQ+
Sbjct: 525 TMIGGYTKNSLPNEALTLFAEMQR 548
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 14/215 (6%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD Y +++ C G ++ ++ G + L MYV G LK+ +
Sbjct: 148 FDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMV 207
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD+L E + WN++I+ YS E++ LF++M +P+ T +
Sbjct: 208 FDKLSESKIFLWNLMIS----------EYSGSGNYGESINLFKQMLELG-IKPNSYTFSS 256
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+L V + +HG K GFN+++ V N LI Y + A KLF++ + D
Sbjct: 257 ILKCFAAVARVEEGRQVHGLICKLGFNSYNT-VVNSLISFYFVGRKVRCAQKLFDELT-D 314
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
R +++SW ++ISG+ +G+ +E F +M G+
Sbjct: 315 R-DVISWNSMISGYVKNGLDDRGIEIFIKMLVFGV 348
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 12/209 (5%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + ++ C +L+ + G ++H + G+ YV A+ DMYV G L + LF
Sbjct: 553 DGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLF 612
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +P ++LV+W V+I GY +EA+ F +M EP E++ +++
Sbjct: 613 DMIPNKDLVSWTVMIA----------GYGMHGYGSEAINTFNQMRMTG-IEPDEVSFISI 661
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A +G + I +K ++ C++D A+ G + A K + + +
Sbjct: 662 LYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPI-K 720
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERM 231
+ W ++ G +H K A + ER+
Sbjct: 721 PDATIWGALLCGCRIHHDVKLAEKVAERI 749
>gi|15241651|ref|NP_196468.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171895|sp|Q9FNN7.1|PP371_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08510
gi|9759345|dbj|BAB10000.1| unnamed protein product [Arabidopsis thaliana]
gi|50897238|gb|AAT85758.1| At5g08510 [Arabidopsis thaliana]
gi|332003930|gb|AED91313.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 511
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 109/348 (31%), Positives = 175/348 (50%), Gaps = 50/348 (14%)
Query: 1 FLVYKQLQQIYIHSHSPLPPL-------FDSF-----TYSFLIRTCVTLSYPNLGTQLHA 48
FL K +Q Y+H H P + FD T++F+ + S LH+
Sbjct: 48 FLYNKLIQAYYVH-HQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHS 106
Query: 49 VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG--------- 99
F + GF+S + T L Y LG L + ++FDE+ +R++ WN +ITG
Sbjct: 107 QFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKA 166
Query: 100 ------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIW 147
+ WT +I G+S+ +EAL +F M + +P+ IT+++VLPA
Sbjct: 167 AMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACA 226
Query: 148 KNGEVRNCQLIHGYGEKRGFNAFD-IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLV 206
GE+ + + GY + GF FD I+V N I+ Y+KCG I A +LFE+ +++NL
Sbjct: 227 NLGELEIGRRLEGYARENGF--FDNIYVCNATIEMYSKCGMIDVAKRLFEELG-NQRNLC 283
Query: 207 SWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKM 255
SW ++I A HG EA+ F +M + G KP+ +G +G + F M
Sbjct: 284 SWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSM 343
Query: 256 VEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
E ++ P ++HYGC+ID+L R G+L++A ++ +P + + VVW T
Sbjct: 344 EEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMK-PDAVVWGT 390
>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
lyrata]
Length = 1221
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 166/344 (48%), Gaps = 67/344 (19%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DSF+++F+++ G Q+H K G SH++V T L MY G + + K+F
Sbjct: 272 DSFSFAFVVKAAANFRSLRTGFQMHCQALKHGLDSHLFVATTLIGMYGECGCVGFARKVF 331
Query: 83 DELPERNLVTWNVIITGL------------------------------------------ 100
DE+P+ NLV WN ++T
Sbjct: 332 DEMPQPNLVAWNAVVTACFRGNDVSGAREIFDKMLVRNHTSWNVMLAGYIKAGELECAKR 391
Query: 101 ----------VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
V W+ +I G+S NE+ + FR + E P+E+++ VL A ++G
Sbjct: 392 IFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFRELLRAEM-RPNEVSLTGVLSACSQSG 450
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
+ +HG+ EK G+ ++ + V+N LID Y++CG + A +FE +++++VSWT+
Sbjct: 451 AFEFGKTLHGFVEKSGY-SWIVSVNNALIDMYSRCGNVPMARLVFEGMQ-EKRSIVSWTS 508
Query: 211 IISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEEC 259
+I+G AMHG G+EA+ F M + G+ P+ I +EG +F KM
Sbjct: 509 MIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYACSHAGLIKEGEGYFSKMKRVY 568
Query: 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ P ++HYGC++D+ R+G+L++A +P T +VWRT
Sbjct: 569 HIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPT-AIVWRT 611
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 21/204 (10%)
Query: 42 LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV 101
G LH K G+ V VN AL DMY G + + +F+ + E+ +V
Sbjct: 454 FGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKR---------SIV 504
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
WT +I G + EA+ +F M P EI+ +++L A G ++ + GY
Sbjct: 505 SWTSMIAGLAMHGHGEEAIRIFNEMTESGVM-PDEISFISLLYACSHAGLIKEGE---GY 560
Query: 162 GEKRGFNAFDIHVS----NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAM 217
K + I + C++D Y + G + A + +V W T++ +
Sbjct: 561 FSKMK-RVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAIV-WRTLLGACSS 618
Query: 218 HGMGKEAVENFERMQKVGLKPNRS 241
HG + A + +R+ + L PN S
Sbjct: 619 HGNIELAEQVKQRLNE--LDPNNS 640
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 89/203 (43%), Gaps = 18/203 (8%)
Query: 44 TQLHAVFSKVGFQSHVY-VNTALGDMYVSLG-FLKDSSKLFDELPERNLVTWNVIITGLV 101
TQ+H F K G + Y + + +S+ L + +L PE + +N ++ G
Sbjct: 189 TQIHGFFIKSGVDTDSYFIGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLVRG-- 246
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
YS + + ++A+F M + P + V+ A +R +H
Sbjct: 247 --------YSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQ 298
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
K G ++ + V+ LI Y +CGC+ A K+F++ + + NLV+W +++
Sbjct: 299 ALKHGLDSH-LFVATTLIGMYGECGCVGFARKVFDE--MPQPNLVAWNAVVTACFRGNDV 355
Query: 222 KEAVENFERMQKVGLKPNRSWRI 244
A E F++M ++ + SW +
Sbjct: 356 SGAREIFDKML---VRNHTSWNV 375
>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Glycine max]
Length = 780
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 162/292 (55%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++FT++ +++ C +L NLG Q+H+ KVG S+V+V+ AL D+Y G +++S KLF
Sbjct: 306 NNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLF 365
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E+N V WN II GY ++ +AL LF M + +P+E+T +V
Sbjct: 366 TGSTEKNEVAWNTIIV----------GYVQLGDGEKALNLFSNMLGLD-IQPTEVTYSSV 414
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + + IH K +N D V+N LID YAKCG I A F+ +D+
Sbjct: 415 LRASASLVALEPGRQIHSLTIKTMYNK-DSVVANSLIDMYAKCGRIDDARLTFD--KMDK 471
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
++ VSW +I G+++HG+G EA+ F+ MQ+ KPN+ +G ++G
Sbjct: 472 QDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAH 531
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F M+++ + P I+HY C++ +L R+G+ ++A ++ IP Q +V+VWR
Sbjct: 532 FKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQ-PSVMVWRA 582
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 114/216 (52%), Gaps = 13/216 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++FT S +++C L +G +H KV + +YV AL ++Y G + ++ + F
Sbjct: 204 NNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFF 263
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+P+ +L+ W+++I+ Y++ ++S EAL LF RM P+ T +V
Sbjct: 264 EEMPKDDLIPWSLMISR----------YAQSDKSKEALELFCRMRQSSVVVPNNFTFASV 313
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + IH K G ++ ++ VSN L+D YAKCG I ++ KLF T
Sbjct: 314 LQACASLVLLNLGNQIHSCVLKVGLDS-NVFVSNALMDVYAKCGEIENSVKLF--TGSTE 370
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
KN V+W TII G+ G G++A+ F M + ++P
Sbjct: 371 KNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQP 406
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 147/316 (46%), Gaps = 33/316 (10%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
DS +Y+ +++ + PN G LH K G ++ L + YV GFL+D+SKL
Sbjct: 1 MDSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKL 60
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FDE+P +T V + + G+SR ++ + E E ++
Sbjct: 61 FDEMP----------LTNTVSFVTLAQGFSRSHQF-QRARRLLLRLFREGYEVNQFVFTT 109
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+L + C +H Y K G A D V LID Y+ CG + +A ++F+ +
Sbjct: 110 LLKLLVSMDLADTCLSVHAYVYKLGHQA-DAFVGTALIDAYSVCGNVDAARQVFD--GIY 166
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGE-----EGLKFFD--K 254
K++VSWT +++ +A + ++++ F +M+ +G +PN ++ I GL+ F K
Sbjct: 167 FKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPN-NFTISAALKSCNGLEAFKVGK 225
Query: 255 MVEEC--EVLPDIKHYG--CLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLI 310
V C +V D Y L+++ ++G + +A++ +P +++ W L+I
Sbjct: 226 SVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKD--DLIPW-----SLMI 278
Query: 311 NSYFFSPITLNSQRLF 326
+ Y S + + LF
Sbjct: 279 SRYAQSDKSKEALELF 294
>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
Length = 512
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 104/314 (33%), Positives = 160/314 (50%), Gaps = 39/314 (12%)
Query: 11 YIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV 70
Y+ S LP +++T+SFL++ C LS + G LHA ++G++++ +V L +Y
Sbjct: 78 YMLSTGFLP---NNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWEAYDFVQNGLLHLYA 134
Query: 71 SLGFLKDSSKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDG 109
S + + +LFD R++VTW +I G K W+ +I G
Sbjct: 135 SCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITG 194
Query: 110 YSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNA 169
Y+++ EAL LF M + P+ I+ L A G + + IH Y + R
Sbjct: 195 YAQIGLFREALELFNDMQIAGF-RPNHGAIVGALTACAFLGALDQGRWIHAYVD-RNRMV 252
Query: 170 FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFE 229
D + LID YAKCGC+ +A ++F D +DR ++ ++T++ISG A HG A+E F
Sbjct: 253 LDRILGTALIDMYAKCGCVETACRVF-DEMLDR-DVFAFTSLISGLANHGHSATAIEMFT 310
Query: 230 RMQKVGLKPNR---------SWRIG--EEGLKFFDKMVEECEVLPDIKHYGCLIDILERA 278
RMQ G+ PN R+G EEGL+ F M + P ++HYGCL+D+L RA
Sbjct: 311 RMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRA 370
Query: 279 GRLEQAEEVASGIP 292
G LE A+ V +P
Sbjct: 371 GMLEDAKRVVREMP 384
>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1026
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 152/302 (50%), Gaps = 36/302 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T +I +C + NLG + H + G + + + AL DMYV G L + LF
Sbjct: 258 NEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLF 317
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
D + ++ LV+W ++ G +V W II G + + EALA
Sbjct: 318 DNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALA 377
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M EP ++T++ L A + G + IH Y E+ + D+ + L+D
Sbjct: 378 LFHEMQI-RTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKL-SIDVALGTALVDM 435
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG I A ++FE+ + ++N ++WT +I G A+HG ++A+ F +M +G+ P+
Sbjct: 436 YAKCGNIARALQVFEE--IPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEI 493
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+G EEG K+F +M + V P +KHY C++D+L RAG LE+AEE+
Sbjct: 494 TFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKN 553
Query: 291 IP 292
+P
Sbjct: 554 MP 555
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 147/321 (45%), Gaps = 59/321 (18%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ TY L++ C LG + K GF+ ++V+ A M +S G L + +F
Sbjct: 157 DNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVF 216
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++ R+LVTWN +ITG VK I EA+ +++ M A E P+EIT++ +
Sbjct: 217 NKSRVRDLVTWNSMITGCVKRGLAI----------EAIKIYKEMEA-EKVRPNEITMIGM 265
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ + + ++ + H Y ++ G F I ++N L+D Y KCG + +A LF++ + +
Sbjct: 266 ISSCSQVQDLNLGKEFHCYIKEHGLE-FTIPLTNALMDMYVKCGELLTARVLFDNMA--Q 322
Query: 203 KNLVSWTTIISGFAMHG-------------------------------MGKEAVENFERM 231
K LVSWTT++ G+A G GKEA+ F M
Sbjct: 323 KTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEM 382
Query: 232 QKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGR 280
Q ++P++ + + G+ + +E ++ D+ L+D+ + G
Sbjct: 383 QIRTIEPDKVTMVNCLSACSQLGALDVGI-WIHHYIERHKLSIDVALGTALVDMYAKCGN 441
Query: 281 LEQAEEVASGIPSQITNVVVW 301
+ +A +V IP + N + W
Sbjct: 442 IARALQVFEEIPQR--NCLTW 460
>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
small; Tetratricopeptide-like helical [Medicago
truncatula]
Length = 971
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 94/302 (31%), Positives = 152/302 (50%), Gaps = 36/302 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T +I +C + NLG + H + G + + + AL DMYV G L + LF
Sbjct: 258 NEITMIGMISSCSQVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCGELLTARVLF 317
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
D + ++ LV+W ++ G +V W II G + + EALA
Sbjct: 318 DNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALA 377
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M EP ++T++ L A + G + IH Y E+ + D+ + L+D
Sbjct: 378 LFHEMQI-RTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIERHKL-SIDVALGTALVDM 435
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG I A ++FE+ + ++N ++WT +I G A+HG ++A+ F +M +G+ P+
Sbjct: 436 YAKCGNIARALQVFEE--IPQRNCLTWTAVICGLALHGNAQDALSYFSKMIHIGIVPDEI 493
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+G EEG K+F +M + V P +KHY C++D+L RAG LE+AEE+
Sbjct: 494 TFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHYSCMVDLLGRAGHLEEAEELVKN 553
Query: 291 IP 292
+P
Sbjct: 554 MP 555
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/321 (25%), Positives = 147/321 (45%), Gaps = 59/321 (18%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ TY L++ C LG + K GF+ ++V+ A M +S G L + +F
Sbjct: 157 DNHTYPLLLKGCCGQYSSCLGLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVF 216
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++ R+LVTWN +ITG VK I EA+ +++ M A E P+EIT++ +
Sbjct: 217 NKSRVRDLVTWNSMITGCVKRGLAI----------EAIKIYKEMEA-EKVRPNEITMIGM 265
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ + + ++ + H Y ++ G F I ++N L+D Y KCG + +A LF++ + +
Sbjct: 266 ISSCSQVQDLNLGKEFHCYIKEHGLE-FTIPLTNALMDMYVKCGELLTARVLFDNMA--Q 322
Query: 203 KNLVSWTTIISGFAMHG-------------------------------MGKEAVENFERM 231
K LVSWTT++ G+A G GKEA+ F M
Sbjct: 323 KTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQAKQGKEALALFHEM 382
Query: 232 QKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGR 280
Q ++P++ + + G+ + +E ++ D+ L+D+ + G
Sbjct: 383 QIRTIEPDKVTMVNCLSACSQLGALDVGI-WIHHYIERHKLSIDVALGTALVDMYAKCGN 441
Query: 281 LEQAEEVASGIPSQITNVVVW 301
+ +A +V IP + N + W
Sbjct: 442 IARALQVFEEIPQR--NCLTW 460
>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
Length = 771
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 158/289 (54%), Gaps = 37/289 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ TY+ +++ C T G ++H + G+ ++V AL MY G LK++ KLF
Sbjct: 297 NKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLF 356
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+LP R++VTW ++T GY+++ +EA+ LFRRM + +P ++T +
Sbjct: 357 GDLPHRDVVTWTAMVT----------GYAQLGFHDEAIDLFRRMQQ-QGIKPDKMTFTSA 405
Query: 143 L-----PAIWKNGEVRNCQLIH-GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
L PA + G+ + QL+H GY + D+++ + L+ YAKCG + A +F
Sbjct: 406 LTSCSSPAFLQEGKSIHQQLVHAGY-------SLDVYLQSALVSMYAKCGSMDDARLVFN 458
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---------SWRIG-- 245
S +N+V+WT +I+G A HG +EA+E FE+M+K G+KP++ +G
Sbjct: 459 QMS--ERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLV 516
Query: 246 EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
EEG K F M + + P ++HY C +D+L RAG LE+AE V +P Q
Sbjct: 517 EEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQ 565
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/290 (27%), Positives = 140/290 (48%), Gaps = 28/290 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ L+ +G ++H +K G + V T+L MY G + + +F
Sbjct: 196 DKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIF 255
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D+LPE+N+VTW ++I GY++ + + AL L +M E P++IT ++
Sbjct: 256 DKLPEKNVVTWTLLIA----------GYAQQGQVDVALELLEKMQQAEVA-PNKITYTSI 304
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + + + +H Y + G+ +I V N LI Y KCG + A KLF D +
Sbjct: 305 LQGCTTPLALEHGKKVHRYIIQSGYGR-EIWVVNALITMYCKCGGLKEARKLFGD--LPH 361
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKF 251
+++V+WT +++G+A G EA++ F RMQ+ G+KP++ S +EG
Sbjct: 362 RDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSI 421
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
++V L D+ L+ + + G ++ A V + + + NVV W
Sbjct: 422 HQQLVHAGYSL-DVYLQSALVSMYAKCGSMDDARLVFNQMSER--NVVAW 468
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 109/219 (49%), Gaps = 18/219 (8%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
S + L++ C L G ++HA K G Q + Y+ L MY G L D+ ++FD
Sbjct: 96 SDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFD 155
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM--AACEYTEPSEITILA 141
+ +RN+V+ WT +I+ + N++ EA + M A C +P ++T ++
Sbjct: 156 GIRDRNIVS----------WTAMIEAFVAGNQNLEAYKCYETMKLAGC---KPDKVTFVS 202
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+L A ++ Q +H K G + V L+ YAKCG I A +F+ +
Sbjct: 203 LLNAFTNPELLQVGQKVHMEIAKAGLE-LEPRVGTSLVGMYAKCGDISKAQVIFD--KLP 259
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
KN+V+WT +I+G+A G A+E E+MQ+ + PN+
Sbjct: 260 EKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNK 298
>gi|449454143|ref|XP_004144815.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
gi|449490933|ref|XP_004158752.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Cucumis sativus]
Length = 484
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 99/322 (30%), Positives = 167/322 (51%), Gaps = 39/322 (12%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
+ +H +P D +T++ L+++C L +LG + + + GF + + ++YV
Sbjct: 98 MKNHRIVP---DQYTFAPLLKSCANLCEYSLGQCVISEVFRRGFYCFGSIRIGVVELYVC 154
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGY 110
++D+ K+FDE+ R++V WN++I G LV W II
Sbjct: 155 CEKMEDAWKMFDEMSHRDVVVWNLMIRGFCKTGNVDFGLCLFRQMSERSLVSWNTIISCL 214
Query: 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF 170
++ R EAL LF++M + +P E+T++ +LP + G + Q IH Y +G
Sbjct: 215 AQNRRDVEALELFQQMEEHGF-KPDEVTVVTMLPVCSRLGALEVGQRIHSYASSKGNLVG 273
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
V N LID Y KCG I A +F+ + K++VSW TII GFA++G G+ A++ F
Sbjct: 274 ITTVGNSLIDFYCKCGNIEKAYNIFQKMTC--KSVVSWNTIILGFALNGKGEFAIDLFME 331
Query: 231 MQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
M+K LKPN + + E+G + F M E+ E+ P ++H+GC++D+L R G
Sbjct: 332 MRKEYLKPNDATFVAVLTACVHSGLLEKGRELFSSMAEDYEIQPKLEHFGCMVDLLGRGG 391
Query: 280 RLEQAEEVASGIPSQITNVVVW 301
+E+A ++ +P Q N +W
Sbjct: 392 CVEEAHKLIKSMPMQ-PNATLW 412
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 69/309 (22%), Positives = 114/309 (36%), Gaps = 56/309 (18%)
Query: 44 TQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKW 103
TQ+HA F + G + + S + + +LF + N+ +N
Sbjct: 26 TQIHAHFLRHGLHQSNQILAHFISVCASFNRIAYADRLFSQSHNPNIFLFN--------- 76
Query: 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGE 163
II +S +++L LF M P + T +L + E Q +
Sbjct: 77 -SIIKAHSLSVPFHQSLLLFSSMKN-HRIVPDQYTFAPLLKSCANLCEYSLGQCVISEVF 134
Query: 164 KRGFNAF------------------------------DIHVSNCLIDTYAKCGCIFSASK 193
+RGF F D+ V N +I + K G +
Sbjct: 135 RRGFYCFGSIRIGVVELYVCCEKMEDAWKMFDEMSHRDVVVWNLMIRGFCKTGNVDFGLC 194
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---------SWRI 244
LF S ++LVSW TIIS A + EA+E F++M++ G KP+ R+
Sbjct: 195 LFRQMS--ERSLVSWNTIISCLAQNRRDVEALELFQQMEEHGFKPDEVTVVTMLPVCSRL 252
Query: 245 G--EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
G E G + + ++ LID + G +E+A + + + +VV W
Sbjct: 253 GALEVGQRIHSYASSKGNLVGITTVGNSLIDFYCKCGNIEKAYNIFQKMTCK--SVVSWN 310
Query: 303 TGFLRLLIN 311
T L +N
Sbjct: 311 TIILGFALN 319
>gi|110741623|dbj|BAE98759.1| hypothetical protein [Arabidopsis thaliana]
Length = 504
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 109/348 (31%), Positives = 175/348 (50%), Gaps = 50/348 (14%)
Query: 1 FLVYKQLQQIYIHSHSPLPPL-------FDSF-----TYSFLIRTCVTLSYPNLGTQLHA 48
FL K +Q Y+H H P + FD T++F+ + S LH+
Sbjct: 41 FLYNKLIQAYYVH-HQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHS 99
Query: 49 VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG--------- 99
F + GF+S + T L Y LG L + ++FDE+ +R++ WN +ITG
Sbjct: 100 QFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKA 159
Query: 100 ------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIW 147
+ WT +I G+S+ +EAL +F M + +P+ IT+++VLPA
Sbjct: 160 AMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACA 219
Query: 148 KNGEVRNCQLIHGYGEKRGFNAFD-IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLV 206
GE+ + + GY + GF FD I+V N I+ Y+KCG I A +LFE+ +++NL
Sbjct: 220 NLGELEIGRRLEGYARENGF--FDNIYVCNATIEMYSKCGMIDVAKRLFEELG-NQRNLC 276
Query: 207 SWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKM 255
SW ++I A HG EA+ F +M + G KP+ +G +G + F M
Sbjct: 277 SWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSM 336
Query: 256 VEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
E ++ P ++HYGC+ID+L R G+L++A ++ +P + + VVW T
Sbjct: 337 EEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMK-PDAVVWGT 383
>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930 [Vitis vinifera]
Length = 724
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 158/313 (50%), Gaps = 37/313 (11%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L S T ++ C L N+G ++H + + + AL DMY + G + +
Sbjct: 217 LPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALG 276
Query: 81 LFDELPERNLVTWNVIITGL---------------------VKWTGIIDGYSRMNRSNEA 119
+FD + R++++W I+TG V WT +IDGY ++NR E
Sbjct: 277 IFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEV 336
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
L+LFR M A +P E T++++L A G + + I Y +K D V N LI
Sbjct: 337 LSLFREMQAAN-IKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIK-IDSFVGNALI 394
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D Y CG + A ++F ++ ++ +SWT +I G A++G G+EA++ F +M K + P+
Sbjct: 395 DMYFNCGNVEKAIRIF--NAMPHRDKISWTAVIFGLAINGYGEEALDMFSQMLKASITPD 452
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
IG ++G KFF +M + + P++ HYGC++D+L RAG L++A EV
Sbjct: 453 EVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVI 512
Query: 289 SGIPSQITNVVVW 301
+P + N +VW
Sbjct: 513 KNMPVK-PNSIVW 524
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 147/346 (42%), Gaps = 61/346 (17%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +TY FL++ + G +LH K+GF S+V+V AL +Y G + + +F
Sbjct: 118 DEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVF 177
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + ++VTWNV+I+ GY+R + +E++ LF M PS IT+++V
Sbjct: 178 DRSSKGDVVTWNVMIS----------GYNRSKQFDESMKLFDEMERMRVL-PSSITLVSV 226
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED----- 197
L A K ++ + +H Y + + + N LID YA CG + +A +F++
Sbjct: 227 LSACSKLKDLNVGKRVHRYVKDLKIEPVRV-LENALIDMYAACGDMDTALGIFDNMKSRD 285
Query: 198 ------------------------TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
+ ++ VSWT +I G+ KE + F MQ
Sbjct: 286 VISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQA 345
Query: 234 VGLKPNR--------------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
+KP+ + +GE + DK E+ D LID+ G
Sbjct: 346 ANIKPDEFTMVSILTACAHLGALELGEWIKAYIDKN----EIKIDSFVGNALIDMYFNCG 401
Query: 280 RLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRL 325
+E+A + + +P + + + W L IN Y + + SQ L
Sbjct: 402 NVEKAIRIFNAMPHR--DKISWTAVIFGLAINGYGEEALDMFSQML 445
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 97/217 (44%), Gaps = 16/217 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT ++ C L LG + A K + +V AL DMY + G ++ + ++F
Sbjct: 351 DEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIF 410
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ +P R+ ++W +I GL I+GY EAL +F +M T P E+T + V
Sbjct: 411 NAMPHRDKISWTAVIFGLA-----INGYGE-----EALDMFSQMLKASIT-PDEVTCIGV 459
Query: 143 LPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A +G V + + + G H C++D + G + A ++ ++ V
Sbjct: 460 LCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYG-CMVDLLGRAGHLKEAHEVIKNMPV- 517
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
+ N + W +++ +H E + Q + L+P
Sbjct: 518 KPNSIVWGSLLGACRVH--RDEEMAEMAAQQILELEP 552
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 145/330 (43%), Gaps = 59/330 (17%)
Query: 16 SPLPPLFDSFTYS---FLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS- 71
SP P S + LI+TC +++ Q+H+ G S+ V +
Sbjct: 8 SPPPTHLPSLPQTPPLSLIKTCKSMAQLK---QIHSQTICTGLISNPIVPAQIIAFCCKH 64
Query: 72 -LGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE 130
LG ++ + +FD +P N WN +I GYSR+ N A++++ CE
Sbjct: 65 ELGDMEYARMVFDTMPGPNHFVWN----------NMIKGYSRVGCPNSAVSMY-----CE 109
Query: 131 YTE----PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG 186
E P E T +L ++ V+ + +H + K GF++ ++ V N LI Y+ G
Sbjct: 110 MLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSS-NVFVQNALIHLYSLSG 168
Query: 187 CIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN------- 239
+ A +F+ +S + ++V+W +ISG+ E+++ F+ M+++ + P+
Sbjct: 169 EVSVARGVFDRSS--KGDVVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSV 226
Query: 240 -------RSWRIGEEGLKFF-DKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
+ +G+ ++ D +E VL + LID+ G ++ A + +
Sbjct: 227 LSACSKLKDLNVGKRVHRYVKDLKIEPVRVLEN-----ALIDMYAACGDMDTALGIFDNM 281
Query: 292 PSQITNVVVWR---TGFLRL----LINSYF 314
S+ +V+ W TGF L L +YF
Sbjct: 282 KSR--DVISWTAIVTGFTNLGQVGLARNYF 309
>gi|242054761|ref|XP_002456526.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
gi|241928501|gb|EES01646.1| hypothetical protein SORBIDRAFT_03g037820 [Sorghum bicolor]
Length = 552
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 168/307 (54%), Gaps = 31/307 (10%)
Query: 9 QIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDM 68
++ + + SP P ++FT +F ++ C + P G QLHA + G ++ YV T L ++
Sbjct: 114 RLMLRAGSPRP---NTFTLAFALKACAAVPAPGEGRQLHAQALRQGLEASAYVQTGLLNL 170
Query: 69 YVSLGFLKDSSKLFDEL-PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA 127
Y + + +FD + P+++LV W+ +I+GYSR+ EAL LFR M
Sbjct: 171 YAKCEQVALARTVFDGMAPDKSLVA----------WSAMINGYSRVGMVTEALGLFREMQ 220
Query: 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC 187
A EP E+T++ V+ A K G + + +H Y +++G D+ +S LID YAKCG
Sbjct: 221 AVG-VEPDEVTMVGVISACAKAGALDLGKWVHAYIDRKGIT-VDLELSTALIDMYAKCGL 278
Query: 188 IFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-- 245
I A +F+ ++ K+ +W+ +I GFA+HG+ ++A+ F RM ++ ++PN IG
Sbjct: 279 IERARGVFD--AMVEKDTKAWSAMIVGFAIHGLVEDALGLFSRMLELKVRPNNVTFIGVL 336
Query: 246 ---------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQIT 296
++G +++ M + + P +++YGC+ID+L R+G L+ A +P
Sbjct: 337 SACAHSGLVDDGRRYWSIM-QNLGIKPSMENYGCMIDLLCRSGLLDDAYSFVIDMPIS-P 394
Query: 297 NVVVWRT 303
N ++WRT
Sbjct: 395 NSIIWRT 401
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 21/194 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T +I C +LG +HA + G + ++TAL DMY G ++ + +F
Sbjct: 227 DEVTMVGVISACAKAGALDLGKWVHAYIDRKGITVDLELSTALIDMYAKCGLIERARGVF 286
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + E++ W+ +I G G+++ +AL LF RM + P+ +T + V
Sbjct: 287 DAMVEKDTKAWSAMIVGFA-IHGLVE---------DALGLFSRMLELK-VRPNNVTFIGV 335
Query: 143 LPAIWKNGEV----RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
L A +G V R ++ G K + C+ID + G + A D
Sbjct: 336 LSACAHSGLVDDGRRYWSIMQNLGIKPSMENY-----GCMIDLLCRSGLLDDAYSFVIDM 390
Query: 199 SVDRKNLVSWTTII 212
+ N + W T++
Sbjct: 391 PIS-PNSIIWRTLL 403
>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 157/293 (53%), Gaps = 26/293 (8%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D++T+ L++ C G QLH + K+G +VYV L +MY + +
Sbjct: 128 LPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARC 187
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD + E +V +N +ITG Y+R NR NEAL+LFR M + +P+EIT+L
Sbjct: 188 VFDRIVEPCVVCYNAMITG----------YARRNRPNEALSLFREMQG-KNLKPNEITLL 236
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+VL + G + + IH Y +K GF + + V+ LID +AKCG + A +FE+
Sbjct: 237 SVLSSCALLGSLDLGKWIHEYAKKHGFCKY-VKVNTALIDMFAKCGSLDDAVSIFENMRY 295
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
K+ +W+ +I +A HG + ++ FERM+ ++P+ +G EEG
Sbjct: 296 --KDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGR 353
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
++F MV E ++P IKHYG ++D+L RAG LE A E +P T ++WR
Sbjct: 354 EYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAYEFIDKLPISPTP-MLWR 405
>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
Length = 539
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 166/320 (51%), Gaps = 56/320 (17%)
Query: 33 TCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVT 92
C ++ G +H + + G ++V AL DMY G + ++SK+FD + E+++V+
Sbjct: 22 ACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVFDRIKEKDVVS 81
Query: 93 WNVIITG-------------------------LVKWTGIIDGYSRMNRSNEALALFRRMA 127
WN ++ G +V W+ +I +++ E L +FR M
Sbjct: 82 WNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGCETLDVFREMQ 141
Query: 128 ACEYTE----------------PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD 171
E + P+ TI L A + +R + IH Y + F++
Sbjct: 142 HGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHAYILRNHFDSAF 201
Query: 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
++V+NCLID YAK G I A +F++ + +KN VSWT++++G+ MHG GKEA+E F+ M
Sbjct: 202 LYVANCLIDMYAKSGDIDVARFVFDN--LKQKNFVSWTSLMTGYGMHGRGKEALEVFDEM 259
Query: 232 QKVGLKPN------------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
++VGL+P+ S I ++G++FF+ M +E V+P +HY C++D+L RAG
Sbjct: 260 RRVGLQPDGVTLLVVLYACSHSGMI-DQGIEFFNSMSKEFGVIPGQEHYACMVDLLGRAG 318
Query: 280 RLEQAEEVASGIPSQITNVV 299
RL +A E+ G+ + +++V
Sbjct: 319 RLNEAMELIEGMQMEPSSIV 338
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
Query: 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASK 193
P ++++ VLPA G + + +HG + G + D+ V N L+D YAKCG + ASK
Sbjct: 11 PDVVSLVNVLPACASMGAWLHGKAVHGIAVRSG-SFEDLFVGNALVDMYAKCGMVDEASK 69
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+F+ + K++VSW +++G++ G ++A+ FE+M++ ++ N
Sbjct: 70 VFD--RIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELN 113
>gi|359479098|ref|XP_002274209.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Vitis vinifera]
Length = 518
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 107/313 (34%), Positives = 162/313 (51%), Gaps = 39/313 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNL--GTQLHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSS 79
+ T+ L+ C L G +HA K+G + +V V TAL DMY G L +
Sbjct: 88 NHITFLTLLSACTDFPLEGLRFGGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAW 147
Query: 80 KLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNE 118
+FDE+ RN V+WN +I G ++ WT +I G+ + +
Sbjct: 148 LMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQ 207
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
AL FR M EP +TI++VL A G + I+ + K+ F +I +SN L
Sbjct: 208 ALEWFREMQLAG-VEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFKD-NIKISNSL 265
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
ID Y++CGCI A ++FE + +++LVSW ++I GFA++G +EA+E F M+K G +P
Sbjct: 266 IDMYSRCGCIRLARQVFE--QMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGFRP 323
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ G +EGL+FFD M ++ P I+HYGCL+D+ RAGRLE A V
Sbjct: 324 DGVSFTGALTACSHSGLVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNV 383
Query: 288 ASGIPSQITNVVV 300
+ +P + VV+
Sbjct: 384 IANMPMKPNEVVL 396
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 14/198 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ C L LG ++ K F+ ++ ++ +L DMY G ++ + ++F
Sbjct: 223 DYVTIISVLAACANLGALGLGLWINRFVMKQDFKDNIKISNSLIDMYSRCGCIRLARQVF 282
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+++P+R+LV+WN +I G ++G++ EAL F M E P ++
Sbjct: 283 EQMPKRSLVSWNSMIVGFA-----LNGHAE-----EALEFFNLMRK-EGFRPDGVSFTGA 331
Query: 143 LPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A +G V Q R + H CL+D Y++ G + A + + +
Sbjct: 332 LTACSHSGLVDEGLQFFDIMKRTRKISPRIEHY-GCLVDLYSRAGRLEDALNVIANMPM- 389
Query: 202 RKNLVSWTTIISGFAMHG 219
+ N V ++++ HG
Sbjct: 390 KPNEVVLGSLLAACRTHG 407
>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 643
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/356 (28%), Positives = 173/356 (48%), Gaps = 67/356 (18%)
Query: 11 YIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV 70
++ L DSF+++FL++ + G QLH G +H++V T L MY
Sbjct: 93 FVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVHGLDTHLFVGTTLVSMYS 152
Query: 71 SLGFLKDSSKLFDEL-------------------------------PERNLVTWNVIITG 99
GF+ + K+F+E+ P RNL +WNV++ G
Sbjct: 153 ECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMPFRNLTSWNVMLAG 212
Query: 100 LVK---------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
K W+ +I G++ EA FR + P+E++
Sbjct: 213 YTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVG-MRPNEVS 271
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+ L A G + +++HG+ EK GF + + V+N L+DTY+KCG + A +FE
Sbjct: 272 LTGALSACADAGAIEFGKILHGFIEKSGF-LWMVSVNNALLDTYSKCGNVGMARLVFERM 330
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EE 247
+++++VSWT++I+G AMHG G+EA++ F M++ G++P+ I E+
Sbjct: 331 P-EKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIEK 389
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
G ++F KM + + P I+HYGC++D+ RAG+L++A E +P + ++WRT
Sbjct: 390 GYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPV-LPTAIIWRT 444
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 101/243 (41%), Gaps = 25/243 (10%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
F +++LQQ+ + + + + + C G LH K GF V
Sbjct: 254 FGFFRELQQVGMRP--------NEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVS 305
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPE-RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEA 119
VN AL D Y G + + +F+ +PE R++V+W +I GL + GY EA
Sbjct: 306 VNNALLDTYSKCGNVGMARLVFERMPEKRSIVSWTSMIAGLA-----MHGYG-----EEA 355
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD-IHVSNCL 178
+ LF M P I +++L A G + + Y K +N I C+
Sbjct: 356 IQLFHEMEE-SGIRPDGIAFISILYACSHAGLIEK-GYEYFYKMKDIYNIEPAIEHYGCM 413
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
+D Y + G + A + V ++ W T++ ++HG K A ER+ + L P
Sbjct: 414 VDLYGRAGQLDKAYEFIIHMPVLPTAII-WRTLLGACSIHGNVKLAERVKERLSE--LDP 470
Query: 239 NRS 241
N S
Sbjct: 471 NNS 473
>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 153/290 (52%), Gaps = 27/290 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT + ++ C G +H + QS+++V AL DMY G ++D++ +F
Sbjct: 98 DIFTITTVLHACACNGSLENGKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVF 157
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E+P +++++WN +I GYS+ + NEAL+LF M +P T+ +
Sbjct: 158 LEMPVKDIISWNT----------MIGGYSKNSLPNEALSLFGDMVL--EMKPDGTTLACI 205
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LPA + + +HG+ + GF + D V+N L+D Y KCG A LF+ +
Sbjct: 206 LPACASLASLDRGKEVHGHILRNGFFS-DQQVANALVDMYVKCGVPVLARLLFD--MIPT 262
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
K+L++WT +I+G+ MHG G A+ F M++ G++P+ I +EG +F
Sbjct: 263 KDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRF 322
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F+ M +EC V P ++HY C++D+L R+G+L A + +P + + +W
Sbjct: 323 FNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIE-PDATIW 371
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 100/210 (47%), Gaps = 15/210 (7%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
+++ C +LG +H K L DMY G L + +FD + R
Sbjct: 4 ILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRT 63
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
+VTW T +I Y+R S+EA+ LF M E P TI VL A N
Sbjct: 64 VVTW----------TSLIAAYAREGLSDEAIRLFHEMDR-EGVSPDIFTITTVLHACACN 112
Query: 150 GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWT 209
G + N + +H Y + + +I V N L+D YAKCG + A+ +F + V K+++SW
Sbjct: 113 GSLENGKDVHNYIRENDMQS-NIFVCNALMDMYAKCGSMEDANSVFLEMPV--KDIISWN 169
Query: 210 TIISGFAMHGMGKEAVENFERMQKVGLKPN 239
T+I G++ + + EA+ F M + +KP+
Sbjct: 170 TMIGGYSKNSLPNEALSLFGDMV-LEMKPD 198
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 84/175 (48%), Gaps = 15/175 (8%)
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
++++L A G+V + +HG G K + + N L+D YAKCG + A +F+
Sbjct: 1 MVSILQACANCGDVSLGRAVHGSGVKACVH-WKTTFCNTLLDMYAKCGVLDGAILVFDLM 59
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN----------RSWRIGEEG 248
SV + +V+WT++I+ +A G+ EA+ F M + G+ P+ + E
Sbjct: 60 SV--RTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLEN 117
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
K + E ++ +I L+D+ + G +E A V +P + +++ W T
Sbjct: 118 GKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMP--VKDIISWNT 170
>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/308 (32%), Positives = 157/308 (50%), Gaps = 36/308 (11%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T+ I++C L + G Q H GF+ ++V++AL DMY G L+D+ LFDE+
Sbjct: 78 TFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEI 137
Query: 86 PERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALALFR 124
RN+V+W +ITG V+ W II Y++ S E++ +F
Sbjct: 138 SHRNIVSWTSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFH 197
Query: 125 RMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK 184
RM + +T+ AVL A +G R + IH K G + ++ V +ID Y K
Sbjct: 198 RMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLES-NVFVGTSIIDMYCK 256
Query: 185 CGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI 244
CG + A K F+ + KN+ SW+ +++G+ MHG KEA+E F M G+KPN +
Sbjct: 257 CGKVEMARKAFD--RMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFV 314
Query: 245 G-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPS 293
EEG +F M E +V P ++HYGC++D+L RAG L++A ++ G+
Sbjct: 315 SVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKL 374
Query: 294 QITNVVVW 301
+ + VVW
Sbjct: 375 R-PDFVVW 381
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 90/202 (44%), Gaps = 22/202 (10%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
+++ T S ++ C LG +H K+G +S+V+V T++ DMY G ++ + K
Sbjct: 207 YNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKA 266
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + E+N+ +W+ ++ GY + EAL +F M +P+ IT ++
Sbjct: 267 FDRMREKNVKSWSAMVA----------GYGMHGHAKEALEVFYEMNMAG-VKPNYITFVS 315
Query: 142 VLPAIWKNGEVRNC-----QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
VL A G + + H + + G + C++D + G + A L +
Sbjct: 316 VLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHY-----GCMVDLLGRAGYLKEAFDLIK 370
Query: 197 DTSVDRKNLVSWTTIISGFAMH 218
+ R + V W ++ MH
Sbjct: 371 GMKL-RPDFVVWGALLGACRMH 391
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 79/179 (44%), Gaps = 27/179 (15%)
Query: 98 TGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY-----TEPSEITILAVLPAIWKNGEV 152
T + W +I +R S EAL F M T P I + L + +
Sbjct: 39 TNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQA 98
Query: 153 RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTII 212
LI G+ D+ VS+ L+D Y+KCG + A LF++ S +N+VSWT++I
Sbjct: 99 HQQALIFGFEP-------DLFVSSALVDMYSKCGELRDARTLFDEIS--HRNIVSWTSMI 149
Query: 213 SGFAMHGMGKEAVENFERMQKVGLKPNRSWR----------IGEEGLKFFDKMVEECEV 261
+G+ + A+ F+ M + + SW + E ++ F +MV++ E+
Sbjct: 150 TGYVQNDDAHRALRVFDGMAE---RDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEI 205
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 33/130 (25%)
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEEC 259
VD+ N+ SW ++I+ A G EA+ F M+K+ LKPNRS F ++ C
Sbjct: 36 VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRS---------TFPCAIKSC 86
Query: 260 EVL-------------------PDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
L PD+ L+D+ + G L A + I + N+V
Sbjct: 87 SALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHR--NIVS 144
Query: 301 WR---TGFLR 307
W TG+++
Sbjct: 145 WTSMITGYVQ 154
>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 683
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/328 (32%), Positives = 163/328 (49%), Gaps = 41/328 (12%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHA-VFSKVGFQSHVYVNTALGDMYV 70
+ S L P D T + C L LG ++H V V F + AL DMY
Sbjct: 229 MQEESGLMP--DEATVVSTLSACTALKRLELGKKIHHYVRDNVKFTP--IIGNALLDMYC 284
Query: 71 SLGFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDG 109
G L + +F+E+P +N++ W +++G +V WT +I+G
Sbjct: 285 KCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSPIRDVVIWTAMING 344
Query: 110 YSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNA 169
Y + NR +EA+ALFR M +P + ++++L + G + + IH + ++
Sbjct: 345 YVQFNRFDEAVALFREMQI-RKVKPDKFIVVSLLTGCAQTGAIEQGKWIHEFIDENRI-P 402
Query: 170 FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFE 229
D V LI+ YAKCG I A ++F V K+ SWT+II G AM+G +A+E F
Sbjct: 403 IDAVVGTALIEMYAKCGFIEKALEIFYGLRV--KDTASWTSIICGLAMNGKTSKALELFS 460
Query: 230 RMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERA 278
+M++ G++P+ IG EEG KFF+ M E ++ P ++HYGCL+D+L RA
Sbjct: 461 KMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYGCLVDLLGRA 520
Query: 279 GRLEQAEEVASGIPSQITNVVVWRTGFL 306
G L +AEE+ IP + + V G L
Sbjct: 521 GLLNEAEELIKKIPDENKAITVPLYGSL 548
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 106/207 (51%), Gaps = 14/207 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FTY F+ + L + +L + +K G + YV +L DMY L LF
Sbjct: 136 DNFTYPFVFKAIGYLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLF 195
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+P+R++++WNV+I+G VK R +A+ +F RM P E T+++
Sbjct: 196 DEMPDRDVISWNVMISGYVKC----------RRFEDAINVFCRMQEESGLMPDEATVVST 245
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + + IH Y R F + N L+D Y KCGC+ A +FE+ +
Sbjct: 246 LSACTALKRLELGKKIHHY--VRDNVKFTPIIGNALLDMYCKCGCLSIARAVFEE--MPS 301
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFE 229
KN++ WTT++SG+A G +EA E FE
Sbjct: 302 KNVICWTTMVSGYANCGELEEARELFE 328
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 125/287 (43%), Gaps = 35/287 (12%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYVSL-GFLKDSSKLFDELPER 88
+++C ++++ Q+HA +VG Q V +N + G L + K+F +
Sbjct: 44 LKSCKSMTHLK---QIHAQIFRVGLHQDIVSLNKLMAFCTDPFNGNLNYAEKMFKYIRYP 100
Query: 89 NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148
L+ +N+II K Y R L LF ++ + P T V AI
Sbjct: 101 CLLIYNLIIKAFAKK----GNYKR------TLVLFSKLRE-DGLWPDNFTYPFVFKAIGY 149
Query: 149 NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSW 208
GEV + + G K G FD +V N LID YA+ + K+ D DR +++SW
Sbjct: 150 LGEVSKAEKLRGLVTKTGLE-FDTYVRNSLIDMYAQLA-LTDVMKMLFDEMPDR-DVISW 206
Query: 209 TTIISGFAMHGMGKEAVENFERMQ-KVGLKPNRSWRIG-----------EEGLKFFDKMV 256
+ISG+ ++A+ F RMQ + GL P+ + + E G K +
Sbjct: 207 NVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKRLELGKKIHHYVR 266
Query: 257 EECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ + P I + L+D+ + G L A V +PS+ NV+ W T
Sbjct: 267 DNVKFTPIIGN--ALLDMYCKCGCLSIARAVFEEMPSK--NVICWTT 309
>gi|297746342|emb|CBI16398.3| unnamed protein product [Vitis vinifera]
Length = 608
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/344 (30%), Positives = 162/344 (47%), Gaps = 66/344 (19%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++TY L + C LS +G+++ +GF S ++V+ A+ + VS G L + K+F
Sbjct: 150 DNYTYPLLFKACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMF 209
Query: 83 DELPERNLVTWNVIITG------------------------------------------- 99
D+ R+LV+WN +I G
Sbjct: 210 DKSCVRDLVSWNSMINGYCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLF 269
Query: 100 -------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEV 152
+V W +I GY NR EALALF M A P E+T+++ L A + G +
Sbjct: 270 DEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMN-INPDEVTMVSCLSACSQLGAL 328
Query: 153 RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTII 212
IH Y EK + ++ + LID YAKCG I A ++F++ + +N ++WT II
Sbjct: 329 DVGIWIHHYIEKHEL-SLNVALGTALIDMYAKCGKITKAIQVFQE--LPGRNSLTWTAII 385
Query: 213 SGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEV 261
SG A+HG A+ F M + P+ +G EEG K+F +M + +
Sbjct: 386 SGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNL 445
Query: 262 LPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGF 305
P +KHY C++D+L RAG LE+AEE+ +P + + VVW F
Sbjct: 446 SPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIE-ADAVVWGALF 488
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 88/213 (41%), Gaps = 15/213 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + C L ++G +H K +V + TAL DMY G + + ++F
Sbjct: 311 DEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVF 370
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
ELP RN +TW II+GL + ++ A+A F M P E+T L +
Sbjct: 371 QELPGRNSLTWTAIISGL----------ALHGNAHGAIAYFSEMID-NSVMPDEVTFLGL 419
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G V + + + + +C++D + G + A +L + ++
Sbjct: 420 LSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEA 479
Query: 203 KNLVSWTTIISGFAMHG---MGKEAVENFERMQ 232
+V W + +HG MG+ A +M
Sbjct: 480 DAVV-WGALFFACRIHGNVLMGERAASKLLQMD 511
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 104/272 (38%), Gaps = 81/272 (29%)
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
W I G+ EA+ L++R+ C+ T+P T + A + +R I G+
Sbjct: 118 WNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGHV 177
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT------------------------ 198
GF++ DI VSN +I CG + A K+F+ +
Sbjct: 178 LHLGFDS-DIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYCGNLESARK 236
Query: 199 ---SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP-----------NRSWRI 244
S+ K +VSWTT++ G+A G+ A + F+ M + P NR
Sbjct: 237 LFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANR---- 292
Query: 245 GEEGLKFFDKMVEECEVLPD----------------------IKHY-------------G 269
G+E L F++M + + PD I HY
Sbjct: 293 GKEALALFNEM-QAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGT 351
Query: 270 CLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
LID+ + G++ +A +V +P + N + W
Sbjct: 352 ALIDMYAKCGKITKAIQVFQELPGR--NSLTW 381
>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
Length = 823
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 158/292 (54%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F+ S +++ C +++ LG Q+H + K+G++S ++V AL DMY +++S ++F
Sbjct: 349 NEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIF 408
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
L + N V+WN II GY + + +AL++F M A + +++T +V
Sbjct: 409 SSLQDANEVSWNTIIV----------GYCQSGFAEDALSVFHEMRA-AHMLSTQVTFSSV 457
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A +++ IH EK FN D V N LIDTYAKCG I A K+FE S+
Sbjct: 458 LRACANTSSIKHAVQIHSLIEKSTFNN-DTIVCNSLIDTYAKCGFIRDALKVFE--SIVE 514
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKF 251
++VSW +IIS +A+HG A+E F+RM K +K N S + +GL
Sbjct: 515 CDVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWL 574
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ M+ + + P ++HY C++ +L RAGRL A + IPS + +VWR
Sbjct: 575 FNSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDALKFIGDIPST-PSPMVWRA 625
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 131/300 (43%), Gaps = 40/300 (13%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG--FQSHVYVNTALGDMYVSLGFLKD 77
P DS+ + ++ C+ G +HA + G Q + L + Y LG L
Sbjct: 41 PKLDSYACARFLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLAT 100
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA--ACEYTEPS 135
+ +LFD +PERN V+ + ++ GY+ EAL LFRR+ E
Sbjct: 101 ARRLFDGMPERNRVS----------FVTLMQGYALRGEFEEALELFRRLQREGHEVNHFV 150
Query: 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGF--NAFDIHVSNCLIDTYAKCGCIFSASK 193
TIL VL + G IH K G NAF V LID Y+ CG + A
Sbjct: 151 LTTILKVLVTMDAPGLACG---IHACACKLGHDRNAF---VGTALIDAYSLCGAVCHARC 204
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLK--- 250
+F+ + K+ V+WT ++S ++ + + + A+ F +M+ G KPN + LK
Sbjct: 205 VFD--GIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPF--VLTSALKAAV 260
Query: 251 -----FFDKMVEECEV--LPDIKHY--GCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
K + C V L D + + G L+D+ + G +E A + IP +V++W
Sbjct: 261 CLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHD--DVILW 318
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 82/338 (24%), Positives = 143/338 (42%), Gaps = 39/338 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F + +++ VT+ P L +HA K+G + +V TAL D Y G + + +F
Sbjct: 147 NHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVF 206
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + ++ VT WT ++ YS + AL F +M + +P+ + +
Sbjct: 207 DGIVGKDAVT----------WTAMVSCYSENDIPEYALNTFSKMRMTGF-KPNPFVLTSA 255
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + IHG K ++ + HV L+D YAKCG I A +FE +
Sbjct: 256 LKAAVCLSSALLGKGIHGCSVKTLYDT-EPHVGGALLDMYAKCGDIEDAHAIFE--MIPH 312
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR--------------SWRIGEEG 248
+++ W+ +IS +A ++A E F RM + + PN +GE+
Sbjct: 313 DDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQI 372
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRL 308
K+ E E+ L+D+ + +E + E+ S + Q N V W T
Sbjct: 373 HNLAIKLGYESELFVG----NALMDMYAKCRNMENSLEIFSSL--QDANEVSWNT----- 421
Query: 309 LINSYFFSPITLNSQRLFFFPAALYALTQILGFKPLFR 346
+I Y S ++ +F A + L+ + F + R
Sbjct: 422 IIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLR 459
>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 811
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 161/292 (55%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++FT++ +++ C + +LG Q+H+ K G S+V+V+ A+ D+Y G +++S KLF
Sbjct: 337 NNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLF 396
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ELP+RN VTWN II G V+ + DG MN LF M + +P+E+T +V
Sbjct: 397 EELPDRNDVTWNTIIVGYVQ---LGDGERAMN-------LFTHMLEHD-MQPTEVTYSSV 445
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + IH K +N D V+N LID YAKCG I A F+ +++
Sbjct: 446 LRASASLAALEPGLQIHSLTIKTMYNK-DTVVANSLIDMYAKCGRINDARLTFD--KMNK 502
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
++ VSW +I G++MHGM EA+ F+ MQ KPN+ +G +G
Sbjct: 503 RDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAH 562
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ M ++ ++ P I+HY C++ +L R GR ++A ++ I Q +V+VWR
Sbjct: 563 FESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQ-PSVMVWRA 613
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 118/216 (54%), Gaps = 14/216 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++FT S +++C+ L N+G +H K + ++V AL ++Y G + D+ +LF
Sbjct: 236 NNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLF 295
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+P+ +L+ W+++I Y++ +RS EAL LF RM P+ T +V
Sbjct: 296 EEMPKTDLIPWSLMIA----------RYAQSDRSKEALDLFLRMRQTSVV-PNNFTFASV 344
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + + + IH K G N+ ++ VSN ++D YAKCG I ++ KLFE+ +
Sbjct: 345 LQACASSVSLDLGKQIHSCVLKFGLNS-NVFVSNAIMDVYAKCGEIENSMKLFEE--LPD 401
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
+N V+W TII G+ G G+ A+ F M + ++P
Sbjct: 402 RNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQP 437
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 110/217 (50%), Gaps = 14/217 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F ++ L++ V++ +L LHA K+G + +V TAL D Y G + + +F
Sbjct: 135 NPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVF 194
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++ +++V+W TG++ Y+ E+L LF +M Y +P+ TI
Sbjct: 195 DDICCKDMVSW----------TGMVACYAENCFYEESLQLFNQMRIMGY-KPNNFTISGA 243
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + + +HG K ++ D+ V L++ YAK G I A +LFE+ + +
Sbjct: 244 LKSCLGLEAFNVGKSVHGCALKGCYD-HDLFVGIALLELYAKSGEIIDAQRLFEE--MPK 300
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+L+ W+ +I+ +A KEA++ F RM++ + PN
Sbjct: 301 TDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPN 337
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 85/327 (25%), Positives = 149/327 (45%), Gaps = 33/327 (10%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRTCV-TLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV 70
IH L L DS +Y+ +++ + + P G LH K G ++ L + YV
Sbjct: 23 IHHQQCLSAL-DSHSYAHMLQQIIRNGADPIAGKHLHCHILKRGTSLDLFAQNILLNFYV 81
Query: 71 SLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE 130
L+D+SKLFDE+P+ N ++ + + GYSR ++ ++AL R+ E
Sbjct: 82 QSNSLQDASKLFDEMPQTNTIS----------FVTLAQGYSRDHQFHQALHFILRIFK-E 130
Query: 131 YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190
E + +L + C +H K G +A D V LID Y+ G +
Sbjct: 131 GHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHA-DAFVGTALIDAYSVRGNVDV 189
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGE---- 246
A +F+D K++VSWT +++ +A + +E+++ F +M+ +G KPN G
Sbjct: 190 ARHVFDDICC--KDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSC 247
Query: 247 EGLKFFD--KMVEECEVLPDIKH---YG-CLIDILERAGRLEQAEEVASGIPSQITNVVV 300
GL+ F+ K V C + H G L+++ ++G + A+ + +P T+++
Sbjct: 248 LGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPK--TDLIP 305
Query: 301 WRTGFLRLLINSYFFSPITLNSQRLFF 327
W L+I Y S + + LF
Sbjct: 306 W-----SLMIARYAQSDRSKEALDLFL 327
>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 726
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 99/283 (34%), Positives = 156/283 (55%), Gaps = 27/283 (9%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
++T + Y N G A G S H+ V+TA+ Y LG +KD+ +FD++ ER+
Sbjct: 259 LQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERD 318
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
LV W+ +I+G Y+ ++ EAL LF M + + P +IT+L+V+ A
Sbjct: 319 LVCWSAMISG----------YAESDQPQEALKLFDEMLQ-KRSVPDQITMLSVISACSHV 367
Query: 150 GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWT 209
G + IH Y ++ GF + V+N LID YAKCG + A ++FE+ + RKN++SW+
Sbjct: 368 GALAQANWIHTYVDRSGFGRA-LSVNNALIDMYAKCGNLVKAREVFEN--MPRKNVISWS 424
Query: 210 TIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEE 258
++I+ FAMHG A++ F RM++V ++PN IG EEG K F M+ E
Sbjct: 425 SMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINE 484
Query: 259 CEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ P +HYGC++D+ RA L +A E+ +P NV++W
Sbjct: 485 HGISPTREHYGCMVDLYCRANFLRKAIELIETMPFA-PNVIIW 526
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 158/347 (45%), Gaps = 64/347 (18%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D F++ L++ +S N G ++H + SK+GF ++ T L MY S + D+ L
Sbjct: 119 LDRFSFPSLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLL 178
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD++ + V WN+ IIDGY + ++AL LF M + + +P + +
Sbjct: 179 FDKMCHPDAVAWNM----------IIDGYCQNGHYDDALRLFEDMRSSD-MKPDSVILCT 227
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL A G + + IH + + G+ A D H+ LI+ YA CG + A K+++ S
Sbjct: 228 VLSACGHAGNLSYGRTIHEFVKDNGY-AIDSHLQTALINMYANCGAMDLARKIYDGLS-- 284
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-------EEGLKFFDK 254
K+L+ T ++SG+A GM K+A F++M + L + G +E LK FD+
Sbjct: 285 SKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISGYAESDQPQEALKLFDE 344
Query: 255 MVEECEVLPD----------IKHYG-------------------------CLIDILERAG 279
M+++ V PD H G LID+ + G
Sbjct: 345 MLQKRSV-PDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCG 403
Query: 280 RLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLF 326
L +A EV +P + NV+ W + +IN++ ++ +LF
Sbjct: 404 NLVKAREVFENMPRK--NVISWSS-----MINAFAMHGNADSAIKLF 443
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 14/198 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T +I C + +H + GF + VN AL DMY G L + ++F
Sbjct: 353 DQITMLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVF 412
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ +P +N+++ W+ +I+ ++ ++ A+ LFRRM EP+ +T + V
Sbjct: 413 ENMPRKNVIS----------WSSMINAFAMHGNADSAIKLFRRMKEVN-IEPNGVTFIGV 461
Query: 143 LPAIWKNGEVRNCQ-LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G V + L + G + H C++D Y + + A +L E T
Sbjct: 462 LYACGHAGLVEEGEKLFSSMINEHGISPTREHYG-CMVDLYCRANFLRKAIELIE-TMPF 519
Query: 202 RKNLVSWTTIISGFAMHG 219
N++ W +++S +HG
Sbjct: 520 APNVIIWGSLMSACQVHG 537
>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
Length = 914
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 163/356 (45%), Gaps = 78/356 (21%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P DSFTYSFLI+ + +H+ K+G +V AL D Y G D+
Sbjct: 444 PRRDSFTYSFLIKALSAAGVAPV-RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDAR 502
Query: 80 KLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNE 118
K+FDE+PER++V+WN + +V+ W I+DGY++
Sbjct: 503 KVFDEMPERDVVSWNTAMAAMVREGELAGARKLFDEMPEKDTVSWNTILDGYTKAGEVEA 562
Query: 119 ALALFRRMA----------ACEYTEPSEI------------------------------- 137
A LF+RM Y + ++
Sbjct: 563 AFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPGKNLVTWTIMMKEASVELDV 622
Query: 138 -TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
++++L A ++G + + IH Y KR HV N LID + KCGC+ A +F
Sbjct: 623 AAVVSILAACAESGSLSLGKRIHRYVRKRNLGR-STHVCNALIDMFCKCGCVNRADYVF- 680
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG----------- 245
DT +K+ VSW +II GFAMHG G +A+E F +M++ G P+ I
Sbjct: 681 DTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACTHMGFV 740
Query: 246 EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+EG ++F M + ++P I+HYGC+ID+L R G +++A ++ +P + N V+W
Sbjct: 741 DEGRRYFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWE-PNEVIW 795
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 102/261 (39%), Gaps = 52/261 (19%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL--PERNLVTWNVIITGLVK 102
+LHA K G + L Y L L S ++FD + P + N ++
Sbjct: 370 ELHAQVLKQGLHLNPRAAARLVSAYALLRLLPSSRRVFDAIRDPHADAFLANTMLR---- 425
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
Y+ +ALA F M T ++ A+ G V + +H +
Sbjct: 426 ------AYALGGAPRDALAAFSAM-----PRRDSFTYSFLIKALSAAG-VAPVRAVHSHV 473
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
K G + D V N LID Y+K G A K+F++ + +++VSW T ++ G
Sbjct: 474 VKLG-SVEDTFVGNALIDAYSKNGGFSDARKVFDE--MPERDVVSWNTAMAAMVREG--- 527
Query: 223 EAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLE 282
+ G + K FD+M E+ D + ++D +AG +E
Sbjct: 528 ---------ELAGAR------------KLFDEMPEK-----DTVSWNTILDGYTKAGEVE 561
Query: 283 QAEEVASGIPSQITNVVVWRT 303
A E+ +P + NVV W T
Sbjct: 562 AAFELFQRMPER--NVVSWST 580
>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 654
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 164/305 (53%), Gaps = 32/305 (10%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
L+YK++++ SP D T + L+ C L +G +LH+ ++ +
Sbjct: 165 LLLYKKMEE---DGFSP-----DEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAV 216
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
+ +AL +MY G LK + ++FD+L ++++ W+ +I G VK NRS EAL
Sbjct: 217 LGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVK----------NNRSTEAL 266
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LFR +A P+E+TILAV+ A + G++ + +H Y R + ++N LID
Sbjct: 267 QLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDY-ITRTQKGHSVSLNNSLID 325
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
++KCG I +A ++F+ S+ K+L+SW ++++G A+HG+G+EA+ F MQ L+P+
Sbjct: 326 MFSKCGDIDAAKRIFD--SMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDE 383
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
IG +EG K F ++ V +HYGC++D+L RAG L +A E
Sbjct: 384 ITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIR 443
Query: 290 GIPSQ 294
+P Q
Sbjct: 444 VMPLQ 448
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 109/218 (50%), Gaps = 15/218 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ L++ C L +G LH K S +Y+ T L +MY + G LK + LF
Sbjct: 78 DRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLF 137
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + RN V WT +I GY + + NEAL L+++M ++ P E+T+ +
Sbjct: 138 ERMGHRNKVV----------WTSMISGYMKNHCPNEALLLYKKMEEDGFS-PDEVTMATL 186
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A + ++ +H + + + + + L++ YAKCG + +A ++F+ S
Sbjct: 187 VSACAELKDLGVGMKLHSHIREMDMKICAV-LGSALVNMYAKCGDLKTARQVFDQLS--D 243
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENF-ERMQKVGLKPN 239
K++ +W+ +I G+ + EA++ F E ++PN
Sbjct: 244 KDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPN 281
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 97 ITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQ 156
+ ++ W ++ + N AL + M P T ++L E + +
Sbjct: 40 VLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGK 99
Query: 157 LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFA 216
++HG K ++ D+++ L++ YA CG + SA LFE + +N V WT++ISG+
Sbjct: 100 VLHGQVVKYMLHS-DLYIETTLLNMYAACGDLKSARFLFE--RMGHRNKVVWTSMISGYM 156
Query: 217 MHGMGKEAVENFERMQKVGLKPN 239
+ EA+ +++M++ G P+
Sbjct: 157 KNHCPNEALLLYKKMEEDGFSPD 179
>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Vitis vinifera]
Length = 536
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 106/352 (30%), Positives = 165/352 (46%), Gaps = 70/352 (19%)
Query: 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF 74
H+ + P D +T++F +++C + S G Q+H K G +++ L +Y S G
Sbjct: 101 HASVLP--DKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGC 158
Query: 75 LKDS-------------------------------SKLFDELPERNLVTWNVIITG---- 99
++D+ LFDE+ ERN+ +WN +I+G
Sbjct: 159 IEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVESWNFMISGYVGV 218
Query: 100 -----------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+V W +I GYS R +E L LF M +P T+++V
Sbjct: 219 GLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAG-VKPDNCTLVSV 277
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + + +H Y +K G + D V+ L+D Y+KCG I A ++F S R
Sbjct: 278 LSACAHVGALSQGEWVHAYIDKNGI-SIDGFVATALVDMYSKCGSIEKALEVF--NSCLR 334
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---------SWRIG--EEGLKF 251
K++ +W +IISG + HG G+ A++ F M G KPN R G +EG +
Sbjct: 335 KDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREM 394
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ MV + P I+HYGC++D+L R G LE+AEE+ +P Q VVW +
Sbjct: 395 FNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMP-QKEASVVWES 445
>gi|297818204|ref|XP_002876985.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322823|gb|EFH53244.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 451
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 94/307 (30%), Positives = 160/307 (52%), Gaps = 37/307 (12%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P FD FT+ F+I+ C+ S LGTQ+H + K GF + V+ L D+Y G
Sbjct: 114 PQFDKFTFPFVIKACLASSSLRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDCGR 173
Query: 80 KLFDELPERNLVTWNVIITGL---------------------VKWTGIIDGYSRMNRSNE 118
K+FD++P R++V+W ++ GL V WT +I Y + R +E
Sbjct: 174 KVFDKMPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPTRNVVSWTAMITAYVKNRRPDE 233
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
A LFRRM + +P+E TI+ +L A + G + + +H Y K GF D ++ L
Sbjct: 234 AFQLFRRMQV-DDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGF-VLDCYLGTAL 291
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENF-ERMQKVGLK 237
ID Y+KCG + A K+F+ + K+L +W ++I+ +HG G+EA+ F E ++ ++
Sbjct: 292 IDMYSKCGSLQDARKVFD--VMQSKSLATWNSMITSLGVHGCGEEALYLFEEMEEEASVE 349
Query: 238 PNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
P+ +G ++GL++F +M++ + P +H C+I +LE+A +E+A +
Sbjct: 350 PDAITFVGVLSACANTGNVKDGLRYFTRMIQVYGISPIREHNACMIQLLEQALEMEKASD 409
Query: 287 VASGIPS 293
P+
Sbjct: 410 SMDSDPN 416
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 75/321 (23%), Positives = 130/321 (40%), Gaps = 56/321 (17%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
F S S+ +RTC S Q+H K + + L + S G + +S +
Sbjct: 18 FRSPEASYFLRTCSNFSQLK---QIHTKIIKHNLTNDQLLVRQLISVSSSFGETQYASLV 74
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F++L + TWN++I L S ++ EAL LF M + + + + T
Sbjct: 75 FNQLQSPSTFTWNLMIRSL----------SLNHKPREALLLFILMLSHQ-PQFDKFTFPF 123
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE----- 196
V+ A + +R +HG K GF D+ N L+D Y KCG K+F+
Sbjct: 124 VIKACLASSSLRLGTQVHGLAIKAGFFN-DVFFQNTLMDLYFKCGKPDCGRKVFDKMPGR 182
Query: 197 --------------DTSVDR----------KNLVSWTTIISGFAMHGMGKEAVENFERMQ 232
++ +D +N+VSWT +I+ + + EA + F RMQ
Sbjct: 183 SIVSWTTMLYGLVSNSQLDSAEIVFNQMPTRNVVSWTAMITAYVKNRRPDEAFQLFRRMQ 242
Query: 233 KVGLKPNR---------SWRIGEEGL-KFFDKMVEECEVLPDIKHYGCLIDILERAGRLE 282
+KPN S ++G + ++ + + D LID+ + G L+
Sbjct: 243 VDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCYLGTALIDMYSKCGSLQ 302
Query: 283 QAEEVASGIPSQITNVVVWRT 303
A +V + S+ ++ W +
Sbjct: 303 DARKVFDVMQSK--SLATWNS 321
>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 595
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 169/333 (50%), Gaps = 43/333 (12%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
FL Y+Q+ S +P +S+T+ FL+R C L Q+H + K+GF S V+
Sbjct: 73 FLSYQQMLS------SSVP--HNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFGSDVF 124
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK------------------ 102
AL +Y G + + +LFD +PER+ V+WN++I G +K
Sbjct: 125 ALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMPLKN 184
Query: 103 ---WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
WT +I G +S EAL+L M + E + I ++L A G + + +H
Sbjct: 185 VVSWTSLISGLVEAGQSVEALSLCYEMQNAGF-ELDGVAIASLLTACANLGALDQGRWLH 243
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
Y G + D + L++ Y KCG + A +F ++K++ WT +I GFA+HG
Sbjct: 244 FYVLNNGVDV-DRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAIHG 302
Query: 220 MGKEAVENFERMQKVGLKPN--------RSWRIG---EEGLKFFDKMVEECEVLPDIKHY 268
G EA+E F RM++ G++PN R+ G EEG + F M V P I+HY
Sbjct: 303 RGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIEHY 362
Query: 269 GCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
GC++D+L R+GRL++A+E+ +P + + V+W
Sbjct: 363 GCMVDLLGRSGRLDEAKELIKKMPMK-PSAVIW 394
>gi|356547111|ref|XP_003541961.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Glycine max]
Length = 521
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 104/316 (32%), Positives = 159/316 (50%), Gaps = 44/316 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPN-----LGTQLHAVFSKVGFQ-SHVYVNTALGDMYVSLGFLK 76
+ T+ L+ C YP+ GT +HA K+G + V V TAL DMY G ++
Sbjct: 90 NHITFITLLSACA--HYPSRSSISFGTAIHAHVRKLGLDINDVMVGTALIDMYAKCGRVE 147
Query: 77 DSSKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNR 115
+ FD++ RNLV+WN +I G ++ WT +I G+ + +
Sbjct: 148 SARLAFDQMGVRNLVSWNTMIDGYMRNGKFEDALQVFDGLPVKNAISWTALIGGFVKKDY 207
Query: 116 SNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS 175
EAL FR M P +T++AV+ A G + +H + F ++ VS
Sbjct: 208 HEEALECFREMQ-LSGVAPDYVTVIAVIAACANLGTLGLGLWVHRLVMTQDFRN-NVKVS 265
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
N LID Y++CGCI A ++F+ + ++ LVSW +II GFA++G+ EA+ F MQ+ G
Sbjct: 266 NSLIDMYSRCGCIDLARQVFD--RMPQRTLVSWNSIIVGFAVNGLADEALSYFNSMQEEG 323
Query: 236 LKPNRSWRIGE-----------EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
KP+ G EGL+ F+ M +LP I+HYGCL+D+ RAGRLE+A
Sbjct: 324 FKPDGVSYTGALMACSHAGLIGEGLRIFEHMKRVRRILPRIEHYGCLVDLYSRAGRLEEA 383
Query: 285 EEVASGIPSQITNVVV 300
V +P + V++
Sbjct: 384 LNVLKNMPMKPNEVIL 399
>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
Length = 830
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/282 (32%), Positives = 156/282 (55%), Gaps = 30/282 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGT-----QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD 77
DS++Y+ ++ C+ S +L ++HA + G+ H +V T L D Y LG +
Sbjct: 349 DSYSYAHGLKACIAASASHLPASARVREMHAHAIRRGYGLHTHVATTLIDCYAKLGIVSY 408
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT-EPSE 136
+ ++F +P+RNLV+W + +I Y++ R +A+ +F+ M A + P+
Sbjct: 409 AERVFTSMPDRNLVSW----------SAMIGCYAKNERPGDAIQIFQEMMASDADLVPNS 458
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
ITI++VL A + +++H Y +RGF+ + V N L+ Y KCGC+ + +F
Sbjct: 459 ITIVSVLHACAGVNALGQGKVLHAYILRRGFDLL-VSVLNALMAMYMKCGCLETGRYIFN 517
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN---------RSWRIG-- 245
R+N+VSW ++ISG+ MHG G+E+++ FE M + G+ PN +G
Sbjct: 518 WIG-RRRNVVSWNSLISGYGMHGFGRESLQVFEEMIEEGISPNIITFVSVLGACSHVGLV 576
Query: 246 EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
E+G K F+ MVE V P +HY C++D+L RAGRL++A E+
Sbjct: 577 EQGKKLFESMVEY-NVTPRAEHYACMVDLLGRAGRLDEAVEL 617
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 25/194 (12%)
Query: 55 FQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMN 114
F+S +++T L + Y +L L + ++FDE P +N+ WN ++ L + +
Sbjct: 280 FRSDPFLSTRLIEAYAALSALPAARQVFDEAPVKNIFVWNAMLKAL----------ALAD 329
Query: 115 RSNEALALFRRMA-------ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF 167
EAL M + Y + I A + + VR +H + +RG+
Sbjct: 330 HGEEALTCLADMGRLGVPVDSYSYAHGLKACIAASASHLPASARVRE---MHAHAIRRGY 386
Query: 168 NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVEN 227
HV+ LID YAK G + A ++F TS+ +NLVSW+ +I +A + +A++
Sbjct: 387 G-LHTHVATTLIDCYAKLGIVSYAERVF--TSMPDRNLVSWSAMIGCYAKNERPGDAIQI 443
Query: 228 FERM--QKVGLKPN 239
F+ M L PN
Sbjct: 444 FQEMMASDADLVPN 457
>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Vitis vinifera]
Length = 662
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 106/337 (31%), Positives = 170/337 (50%), Gaps = 46/337 (13%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHA-VFSKVGFQSHVYV 61
V++++QQ S L P + T + C+ L LG ++H V ++GF + +
Sbjct: 220 VFRRMQQ-----QSSLRP--NEATVVSTLSACIALKMLELGKEIHRYVREQLGFT--IKI 270
Query: 62 NTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK------------------- 102
AL DMY G L + ++F+++P + ++ W +++G V
Sbjct: 271 GNALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDV 330
Query: 103 --WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHG 160
WT +I+GY + NR ++A+ALFR M + P T++A+L + G + + IHG
Sbjct: 331 VLWTAMINGYVQFNRFDDAVALFREMQI-KRVSPDRFTLVALLTGCAQLGTLEQGKWIHG 389
Query: 161 YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGM 220
Y ++ D V LI+ YAKCG I + ++F + K+ SWT+II G AM+G
Sbjct: 390 YIDENKI-MIDAVVGTALIEMYAKCGFIEKSLEIF--NGLKEKDTASWTSIICGLAMNGK 446
Query: 221 GKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYG 269
+A+E F M + G+KP+ IG EEG K F M ++ P ++HYG
Sbjct: 447 TSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYG 506
Query: 270 CLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFL 306
CLID+L RAG+L++AEE+ P+ V+V G L
Sbjct: 507 CLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGAL 543
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 122/230 (53%), Gaps = 24/230 (10%)
Query: 2 LVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYV 61
L+++QL++ L P D+FTY F+ + L G +++ K G + YV
Sbjct: 118 LLFRQLRE------EGLSP--DNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLEFDTYV 169
Query: 62 NTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALA 121
+L DMY +G +++ ++F+E+P+R++V+WNV+I+ GY + R +A+
Sbjct: 170 CNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLIS----------GYVKCRRYEDAVD 219
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY-GEKRGFNAFDIHVSNCLID 180
+FRRM P+E T+++ L A + + IH Y E+ GF I + N L+D
Sbjct: 220 VFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQLGFT---IKIGNALVD 276
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
Y KCG + A ++F D + K ++ WT+++SG+ G EA E FER
Sbjct: 277 MYCKCGHLSIAREIFNDMPI--KTVICWTSMVSGYVNCGQLDEARELFER 324
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 108/217 (49%), Gaps = 16/217 (7%)
Query: 97 ITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQ 156
I GL + +I +++ +A+ LFR++ E P T V AI GEVR +
Sbjct: 94 IPGLFIYNLVIKAFTKNGSFRKAVLLFRQLRE-EGLSPDNFTYPFVFKAIGCLGEVREGE 152
Query: 157 LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFA 216
++G+ K G FD +V N L+D YA+ G + + ++FE+ + ++++VSW +ISG+
Sbjct: 153 KVYGFVVKSGLE-FDTYVCNSLMDMYAEVGRVQNLRQVFEE--MPQRDVVSWNVLISGYV 209
Query: 217 MHGMGKEAVENFERM-QKVGLKPNRSWRIGEEGLKFFDKMVEECEVLP---------DIK 266
++AV+ F RM Q+ L+PN + + KM+E + + IK
Sbjct: 210 KCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQLGFTIK 269
Query: 267 HYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
L+D+ + G L A E+ + +P I V+ W +
Sbjct: 270 IGNALVDMYCKCGHLSIAREIFNDMP--IKTVICWTS 304
>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial-like [Brachypodium distachyon]
Length = 1206
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 151/292 (51%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F+ S +++ C + +LG Q+H K+G +S ++V AL D+Y ++ S ++F
Sbjct: 732 NEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIF 791
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
L + N V+WN II GYS+ AL++FR M A +++T +V
Sbjct: 792 SSLRDVNEVSWNTIIV----------GYSKSGFGEAALSVFREMRAASVPS-TQVTYSSV 840
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + + +H EK FN+ D VSN LID+YAKCGCI A ++FE ++
Sbjct: 841 LRACASTASINHVGQVHCLIEKSTFNS-DTIVSNSLIDSYAKCGCIRDAREIFE--TLKE 897
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKF 251
+LVSW IISG+A+HG A E F+ M K +K N S + +GL
Sbjct: 898 CDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSL 957
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
FD M + + P ++HY C++ +L RAGRL A IPS + +VWR
Sbjct: 958 FDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFIGDIPSA-PSAMVWRA 1008
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 99/218 (45%), Gaps = 16/218 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F + +++ V + L +HA K+G + +V +AL D Y G + D+ ++F
Sbjct: 530 NQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVF 589
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM-AACEYTEPSEITILA 141
D ++ V WT ++ YS + L +F +M A P +T +
Sbjct: 590 D----------GIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALT--S 637
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL A V + IH K ++ + HV L+D YAKCG I A FE + D
Sbjct: 638 VLRAAVCLSSVVLGKGIHACSVKTLYDT-ERHVYGALLDMYAKCGNIEDARLAFEMVTND 696
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+++ W+ +IS +A ++A E F RM + + PN
Sbjct: 697 --DVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPN 732
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 125/279 (44%), Gaps = 30/279 (10%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHV--YVNTALGDMYVSLGFLKD 77
P DS+ Y+ L++ CV G +H + G + + + L +MY +G
Sbjct: 424 PGVDSYAYARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGS 483
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
+ ++FD LPERN+V+ + ++ G++ EA ALF+R+ E E ++
Sbjct: 484 AHRVFDGLPERNMVS----------FVTLVQGHALRGEFEEASALFQRL-RWEGHEVNQF 532
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGF--NAFDIHVSNCLIDTYAKCGCIFSASKLF 195
+ VL + + +H K G NAF V + LID Y+ CG + A ++F
Sbjct: 533 VLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAF---VGSALIDAYSMCGVVSDARRVF 589
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV--GLKPNRSWRIGEEGLKF-- 251
+ + K+ V+WT ++S ++ + + ++ F +M+ L P + +
Sbjct: 590 D--GIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSS 647
Query: 252 --FDKMVEECEV--LPDIKH--YGCLIDILERAGRLEQA 284
K + C V L D + YG L+D+ + G +E A
Sbjct: 648 VVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDA 686
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 14/194 (7%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
TYS ++R C + + N Q+H + K F S V+ +L D Y G ++D+ ++F+ L
Sbjct: 836 TYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETL 895
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
E +LV+WN II+ GY+ ++ A LF M+ + ++IT +A+L
Sbjct: 896 KECDLVSWNAIIS----------GYAVHGQAAMAQELFDMMSK-NSIKANDITFVALLSV 944
Query: 146 IWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
G V + L G H + C++ + G + A D
Sbjct: 945 CGSTGLVSQGLSLFDSMRLDHGIEPSMEHYT-CIVRLLGRAGRLNDALNFIGDIPSAPSA 1003
Query: 205 LVSWTTIISGFAMH 218
+V W ++S +H
Sbjct: 1004 MV-WRALLSSCIVH 1016
>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
Length = 738
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 153/280 (54%), Gaps = 36/280 (12%)
Query: 54 GFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK----------- 102
G ++ ++ A+ DMYV G L+D+ +LFD++ E+++V+W +I G K
Sbjct: 262 GIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVF 321
Query: 103 ----------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEV 152
W +I Y + + EALA+FR + + T+P+E+T+ + L A + G +
Sbjct: 322 DVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAM 381
Query: 153 RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTII 212
IH Y +K+G + H++ LID Y+KCG + A ++F SV+R+++ W+ +I
Sbjct: 382 DLGGWIHVYIKKQGIK-LNFHITTSLIDMYSKCGHLEKALEVF--YSVERRDVFVWSAMI 438
Query: 213 SGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKFFDKMVEECEV 261
+G AMHG G+ A++ F +MQ+ +KPN + +EG FF++M V
Sbjct: 439 AGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGV 498
Query: 262 LPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+P KHY C++DIL RAG LE+A E+ +P + + VW
Sbjct: 499 VPGSKHYACMVDILGRAGCLEEAVELIEKMPI-VPSASVW 537
Score = 105 bits (262), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 122/233 (52%), Gaps = 21/233 (9%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
LV+ Q+ +H P +S+T+ F+I+ +S G +H + K F S ++
Sbjct: 115 LLVFIQM----LHESQRFP---NSYTFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLF 167
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
++ +L Y SLG L + +F ++ E+++V+WN +I+G V+ EAL
Sbjct: 168 ISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQG----------GSPEEAL 217
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LF+RM E P+ +T++ VL A K ++ + Y E+ G + ++ +SN ++D
Sbjct: 218 QLFKRMKM-ENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGID-INLILSNAMLD 275
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
Y KCG + A +LF+ ++ K++VSWTT+I G+A G A F+ M +
Sbjct: 276 MYVKCGSLEDARRLFD--KMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPR 326
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 127/294 (43%), Gaps = 38/294 (12%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGF------QSHVYVNTALGDMYVSLGFLKDSS 79
T LI C + QLHA + G + ++ AL S L +
Sbjct: 32 TVPILIDKCANKKHLK---QLHAHMLRTGLFFDPPSATKLFTACALS----SPSSLDYAC 84
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
K+FD++P NL TWN +I I G L +F +M P+ T
Sbjct: 85 KVFDQIPRPNLYTWNTLIRAFASSPKPIQG----------LLVFIQMLHESQRFPNSYTF 134
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
V+ A + + Q IHG K F + D+ +SN LI Y+ G + SA +F +
Sbjct: 135 PFVIKAATEVSSLLAGQAIHGMVMKASFGS-DLFISNSLIHFYSSLGDLDSAYLVF--SK 191
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR----------SWRIGEEGL 249
+ K++VSW ++ISGF G +EA++ F+RM+ +PNR + RI E
Sbjct: 192 IVEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFG 251
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++ +E + ++ ++D+ + G LE A + + + ++V W T
Sbjct: 252 RWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEK--DIVSWTT 303
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 88/202 (43%), Gaps = 22/202 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T + + C L +LG +H K G + + ++ T+L DMY G L+ + ++F
Sbjct: 364 NEVTLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVF 423
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ R++ W+ +I GL + G+ R A+ LF +M + +P+ +T +
Sbjct: 424 YSVERRDVFVWSAMIAGLA-----MHGHGR-----AAIDLFSKMQETK-VKPNAVTFTNL 472
Query: 143 LPAIWKNGEVRNCQLIHG-----YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
L A +G V +L YG G + C++D + GC+ A +L E
Sbjct: 473 LCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHY-----ACMVDILGRAGCLEEAVELIEK 527
Query: 198 TSVDRKNLVSWTTIISGFAMHG 219
+ V W ++ ++G
Sbjct: 528 MPIVPSASV-WGALLGACRIYG 548
>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 601
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 162/300 (54%), Gaps = 40/300 (13%)
Query: 37 LSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVI 96
L+ L + VF ++ + + NT L D YV +G + D+ KLFDE+PERN+V+W+ +
Sbjct: 197 LAKGGLYEEARKVFDEMPEKDGISWNTML-DGYVKVGKMDDAFKLFDEMPERNVVSWSTM 255
Query: 97 ITG---------------------LVKWTGIIDGYSRMNRSNEALALFRRM-AACEYTEP 134
+ G LV WT I+ G++ + EA++LF +M AC +
Sbjct: 256 VLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDN 315
Query: 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
T++++L A ++G + + IH + F +SN L+D YAKCG + A +
Sbjct: 316 G--TVMSILAACAESGLLGLGEKIHASIKNNNFKC-TTEISNALVDMYAKCGRLNIAYDV 372
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG--------- 245
F D + K++VSW ++ G AMHG G +A+E F+RM++ G PN+ IG
Sbjct: 373 FND--IKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTMIGVLCACTHAG 430
Query: 246 --EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++G+++F M + ++P+++HYGC++D+L R GRLE+A + +P N ++W T
Sbjct: 431 LIDDGIRYFSTMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMP-MAPNAIIWGT 489
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 83/152 (54%), Gaps = 16/152 (10%)
Query: 158 IHGYGEKRGFNAFDIHVSNCLIDTYAKCG-CIFSASKLFEDTSVDRKNLVSWTTIISGFA 216
+H EK GF + D+ V N LID+Y+KCG C SA+K + R+++VSW ++ISG A
Sbjct: 140 VHAQIEKFGFMS-DVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLA 198
Query: 217 MHGMGKEAVENFERM-QKVGLKPNRSW----RIG--EEGLKFFDKMVEECEVLPDIKHYG 269
G+ +EA + F+ M +K G+ N ++G ++ K FD+M E ++ +
Sbjct: 199 KGGLYEEARKVFDEMPEKDGISWNTMLDGYVKVGKMDDAFKLFDEMPER-----NVVSWS 253
Query: 270 CLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
++ +AG +E A + +P + N+V W
Sbjct: 254 TMVLGYCKAGDMEMARMLFDKMP--VKNLVSW 283
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 99/220 (45%), Gaps = 14/220 (6%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D+ T ++ C LG ++HA F+ ++ AL DMY G L + +
Sbjct: 313 LDNGTVMSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDMYAKCGRLNIAYDV 372
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+++ +++V+WN ++ GL + G+ +AL LF+RM E P+++T++
Sbjct: 373 FNDIKNKDVVSWNAMLQGLA-----MHGHGV-----KALELFKRMKE-EGFSPNKVTMIG 421
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL A G + + E+ ++ C++D + G + A +L + +
Sbjct: 422 VLCACTHAGLIDDGIRYFSTMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMPM- 480
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
N + W T++ MH + A E + + V L+P S
Sbjct: 481 APNAIIWGTLLGACRMHNAVELAREVLDHL--VELEPTDS 518
>gi|15223562|ref|NP_176050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75173051|sp|Q9FXA9.1|PPR83_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g56570
gi|9954755|gb|AAG09106.1|AC009323_17 Hypothetical protein [Arabidopsis thaliana]
gi|332195289|gb|AEE33410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 611
Score = 161 bits (407), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 166/300 (55%), Gaps = 32/300 (10%)
Query: 5 KQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTA 64
K +Q+ + + P + + +R ++ G Q+HA K GFQS++ V +
Sbjct: 199 KMYKQMLLENAEVTP-----YCITIAVRASASIDSVTTGKQIHASVIKRGFQSNLPVMNS 253
Query: 65 LGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFR 124
+ D+Y G+L ++ F E+ +++L+TWN +I+ L + + S+EAL +F+
Sbjct: 254 ILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISELER-----------SDSSEALLMFQ 302
Query: 125 RMAACEYTEPSEITILAVLPAIWKNGEVRNC-QLIHGYGEKRGFNAFDIHVSNCLIDTYA 183
R + + P+ T +++ A N NC Q +HG +RGFN ++ ++N LID YA
Sbjct: 303 RFESQGFV-PNCYTFTSLVAAC-ANIAALNCGQQLHGRIFRRGFNK-NVELANALIDMYA 359
Query: 184 KCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN---- 239
KCG I + ++F + VDR+NLVSWT+++ G+ HG G EAVE F++M G++P+
Sbjct: 360 KCGNIPDSQRVFGEI-VDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVF 418
Query: 240 -------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
R + E+GLK+F+ M E + PD Y C++D+L RAG++ +A E+ +P
Sbjct: 419 MAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMP 478
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 111/221 (50%), Gaps = 22/221 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL- 81
+ FT S ++++C + G +H V K+G + +YV+ A+ +MY + +++ L
Sbjct: 110 NEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLI 169
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F ++ +N VTW +ITG +T + DG L ++++M E +E+T
Sbjct: 170 FRDIKVKNDVTWTTLITG---FTHLGDGIG-------GLKMYKQM----LLENAEVTPYC 215
Query: 142 VLPAIWKNGEVRNC---QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+ A+ + + + + IH KRGF + ++ V N ++D Y +CG + A F +
Sbjct: 216 ITIAVRASASIDSVTTGKQIHASVIKRGFQS-NLPVMNSILDLYCRCGYLSEAKHYFHE- 273
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
++ K+L++W T+IS EA+ F+R + G PN
Sbjct: 274 -MEDKDLITWNTLISELERSD-SSEALLMFQRFESQGFVPN 312
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 26/216 (12%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76
P+P S + + + YP + H + + T L Y G ++
Sbjct: 14 PIPNFVRSSLRNAGVESSQNTEYPPYKPKKHHILA-----------TNLIVSYFEKGLVE 62
Query: 77 DSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE 136
++ LFDE+P+R++V W +IT GY+ N + A F M + T P+E
Sbjct: 63 EARSLFDEMPDRDVVAWTAMIT----------GYASSNYNARAWECFHEMVK-QGTSPNE 111
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL-F 195
T+ +VL + + L+HG K G ++V N +++ YA C A+ L F
Sbjct: 112 FTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEG-SLYVDNAMMNMYATCSVTMEAACLIF 170
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
D V KN V+WTT+I+GF G G ++ +++M
Sbjct: 171 RDIKV--KNDVTWTTLITGFTHLGDGIGGLKMYKQM 204
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
LI +Y + G + A LF++ + +++V+WT +I+G+A A E F M K G
Sbjct: 51 LIVSYFEKGLVEEARSLFDE--MPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQGTS 108
Query: 238 PN 239
PN
Sbjct: 109 PN 110
>gi|255540655|ref|XP_002511392.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550507|gb|EEF51994.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 441
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 169/323 (52%), Gaps = 42/323 (13%)
Query: 10 IYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY 69
++ H + L D + + ++++C + P LGT +HA K+GF S+ +V +AL DMY
Sbjct: 49 LFYHMQTSLALSLDPYVFPLVLKSCSAVLCPQLGTSVHAHIVKMGFLSNPFVASALVDMY 108
Query: 70 VSLGFLKDSSKLFDELPERNLVTWNVIIT----------------------GLVKWTGII 107
+ + KLFDE+P+RN+V WN +I+ + + +I
Sbjct: 109 GKCACIFSARKLFDEIPQRNVVVWNAMISLYTHSNRVRDALDMFDAMEIEPNVSTFNALI 168
Query: 108 DGYSRM-NRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRG 166
G S + + S +A+A + +M +P+ IT+LA+LPA + + IHGY +
Sbjct: 169 YGLSGVKDGSIKAIAFYWKMRQLG-LKPNLITLLALLPACVGIAALNLIREIHGYSIR-- 225
Query: 167 FNAFDIH--VSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
N D H + + L+D Y +CGC+ +AS +F + +++V+W+++IS +A+HG K A
Sbjct: 226 -NDIDRHPQLGSGLLDAYGRCGCLINASNVF--CGMKERDVVAWSSLISAYALHGEAKNA 282
Query: 225 VENFERMQKVGLKPN-----------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLID 273
+E F +M+ ++P+ + +E L +F KM E + HY CL+D
Sbjct: 283 LEIFRQMELAKVQPDDITFLAVLKACSHAGLADEALDYFTKMQEGYRLQAVSDHYSCLVD 342
Query: 274 ILERAGRLEQAEEVASGIPSQIT 296
+L RAGRL +A +V +P ++T
Sbjct: 343 VLSRAGRLYEAYKVIQEMPVKVT 365
>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 584
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 108/343 (31%), Positives = 164/343 (47%), Gaps = 68/343 (19%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
+ FT+ F+++ G +H KVGF V+ AL MY+ G + D+ L
Sbjct: 124 LNKFTFLFVLKAYGLRPSYQEGRIVHGKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLL 183
Query: 82 FDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMN------ 114
FDE+P N+VTWN +ITG + W ++ GYS++
Sbjct: 184 FDEMPNHNVVTWNTMITGCFGCGDTERARRLFGEMPERNVGSWNAVVGGYSKLGHVDIAR 243
Query: 115 -------------------------RSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
R+ EAL LF+ M + S I I ++L A +
Sbjct: 244 SLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMMLAGVSADS-IIITSILSACAQI 302
Query: 150 GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWT 209
G + + IH Y KR D+ + L+D YAKCGCI +A +F ++ RKNL SW
Sbjct: 303 GALDMGRWIHAY-MKRSKLRNDVFLDTALVDMYAKCGCIDTAFGVF--NTMPRKNLCSWN 359
Query: 210 TIISGFAMHGMGKEAVENFERMQKVGLKPNR---------SWRIG--EEGLKFFDKMVEE 258
++SG A+HG G A+E F++M+ G+ PN IG EEG K F++M +E
Sbjct: 360 AMLSGLAIHGHGFAALELFKQMESTGVGPNDITFVAVLSACSHIGSVEEGWKKFNQMDKE 419
Query: 259 CEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ P ++HYGC++DIL R G + +A+E+ +P + NVV+W
Sbjct: 420 FNITPKVEHYGCMVDILCRQGLINEAKEMIRTMPLE-PNVVIW 461
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 105/220 (47%), Gaps = 31/220 (14%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DS + ++ C + ++G +HA + ++ V+++TAL DMY G + + +F
Sbjct: 288 DSIIITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTAFGVF 347
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ +P +NL +WN +++GL I G+ AL LF++M + P++IT +AV
Sbjct: 348 NTMPRKNLCSWNAMLSGLA-----IHGHGF-----AALELFKQMESTG-VGPNDITFVAV 396
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFD--------IHVSNCLIDTYAKCGCIFSASKL 194
L A G V G K+ FN D + C++D + G I A ++
Sbjct: 397 LSACSHIGSVEE-------GWKK-FNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEM 448
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERM 231
++ N+V W +++ +HG +G++ V +++
Sbjct: 449 IRTMPLE-PNVVIWGALLNACKVHGYTNVGEDVVGYIQKL 487
>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
Length = 562
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 147/259 (56%), Gaps = 28/259 (10%)
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
TA+ Y G L + LFD + ER+ V WNV+I DGY++ NEAL L
Sbjct: 128 TAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMI----------DGYTQNGMPNEALVL 177
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
FRRM + +P+E+T+L+VL A + G + + + +H Y E G F++HV L+D Y
Sbjct: 178 FRRMLKAK-AKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQ-FNVHVGTALVDMY 235
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW 242
+KCG + A +F+ +D K++V+W ++I G+AMHG +EA++ F+ M ++GL P
Sbjct: 236 SKCGSLEDARLVFD--KIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNIT 293
Query: 243 RIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
IG EG F+KM +E + P I+HYGC++++L RAG +EQA E+ +
Sbjct: 294 FIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNM 353
Query: 292 PSQITNVVVWRT--GFLRL 308
+ + V+W T G RL
Sbjct: 354 NIE-PDPVLWGTLLGACRL 371
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 98/202 (48%), Gaps = 19/202 (9%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
++ C L G +H+ G Q +V+V TAL DMY G L+D+ +FD++ +++
Sbjct: 196 VLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKD 255
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT-EPSEITILAVLPAIWK 148
+V WN +I GY+ S EAL LF+ M C P+ IT + +L A
Sbjct: 256 VVAWNSMIV----------GYAMHGFSQEALQLFKSM--CRMGLHPTNITFIGILSACGH 303
Query: 149 NGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
+G V + + ++ G I C+++ + G + A +L ++ +++ + V
Sbjct: 304 SGWVTEGWDIFNKMKDEYGIEP-KIEHYGCMVNLLGRAGHVEQAYELVKNMNIE-PDPVL 361
Query: 208 WTTIISGFAMHG---MGKEAVE 226
W T++ +HG +G++ VE
Sbjct: 362 WGTLLGACRLHGKIALGEKIVE 383
>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 160 bits (406), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 106/333 (31%), Positives = 162/333 (48%), Gaps = 45/333 (13%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
L+Y Q+ H +P +++T+ FL++ C LS Q+H K GF S VY
Sbjct: 96 LLLYHQML------HHSIP--HNAYTFPFLLKACSALSALAETHQIHVQIIKRGFGSEVY 147
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK------------------ 102
+L +Y G +K + LFD LP R++V+WN +I G +K
Sbjct: 148 ATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAMPEKN 207
Query: 103 ---WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
WT +I G+ R EAL L ++M +P +IT+ L A G + + IH
Sbjct: 208 VISWTSMIVGFVRTGMHKEALCLLQQMLVAG-IKPDKITLSCSLSACAGLGALEQGKWIH 266
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
Y K D + LID Y KCG + A +F + +++K + +WT II GFA+HG
Sbjct: 267 TYIGKNKIK-IDPVLGCALIDMYVKCGEMKKALLVF--SKLEKKCVYTWTAIIGGFAVHG 323
Query: 220 MGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKFFDKMVEECEVLPDIKHY 268
G EA++ F +MQK G+KP + EEG F+ M + P ++HY
Sbjct: 324 KGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVMEHY 383
Query: 269 GCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
GC++D+L RAG L++A+E +P + N +W
Sbjct: 384 GCMVDLLGRAGFLKEAKEFVESMPIK-PNAAIW 415
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 100/233 (42%), Gaps = 45/233 (19%)
Query: 41 NLG--TQLHAVFSKVGFQSHVYVNTALGDMYVSLGF--LKDSSKLFDELPERNLVTWNVI 96
N+G Q+H K G H + L Y S+ F L + +FD + N V WN +
Sbjct: 23 NIGELKQIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSPNTVMWNTM 82
Query: 97 ITGLVKWTGIIDGYSRMNRSNEALALFRRM-----AACEYTEPSEITILAVLPAIWKNGE 151
I YS N EAL L+ +M YT P + + L A+ + +
Sbjct: 83 ----------IRAYSNSNDPEEALLLYHQMLHHSIPHNAYTFPFLLKACSALSALAETHQ 132
Query: 152 VRNCQLIHGYGE------------------KRGFNAFDIHVS------NCLIDTYAKCGC 187
+ + G+G K FD+ S N +ID Y KCG
Sbjct: 133 IHVQIIKRGFGSEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGN 192
Query: 188 IFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+ A K+F+ ++ KN++SWT++I GF GM KEA+ ++M G+KP++
Sbjct: 193 VEMAYKIFQ--AMPEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDK 243
>gi|347954510|gb|AEP33755.1| chloroplast biogenesis 19, partial [Olimarabidopsis pumila]
Length = 475
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 150/292 (51%), Gaps = 37/292 (12%)
Query: 42 LGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG- 99
LG LH K+G ++HV V TA+ MY G +K + +FD + ++N VTWN +I G
Sbjct: 66 LGDLLHGYACKLGLDRNHVMVGTAILGMYSKRGRVKKARLVFDYMDDKNSVTWNTMIDGY 125
Query: 100 --------------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
L+ WT +++G+ + EAL FR M +P + I
Sbjct: 126 MRSGQVHNAVKLFDKMPEPDLISWTAMVNGFVKKGFHEEALVWFREMQ-ISGVKPDYVAI 184
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+A L A G + +H Y + F ++ VSN LID Y +CGC+ A ++F+
Sbjct: 185 IAALNACTNLGALSLGLWVHRYVMSQDFKN-NVRVSNSLIDLYCRCGCVEFAREVFD--K 241
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
++++ +VSW ++I GFA +G E++ F +MQ+ G KPN G +EG
Sbjct: 242 MEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPNAVTFTGALTACSHVGLVDEG 301
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
L+FF M + + P I+HYGCL+D+ RAGRLE A +V +P + VV+
Sbjct: 302 LRFFQSMKRDYNISPRIEHYGCLVDLYSRAGRLEDALKVVQSMPMKPNEVVI 353
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 91/190 (47%), Gaps = 14/190 (7%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
+ C L +LG +H F+++V V+ +L D+Y G ++ + ++FD++ +R +
Sbjct: 188 LNACTNLGALSLGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTV 247
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
V+WN +I G++ ++E+L FR+M E +P+ +T L A G
Sbjct: 248 VSWNSVIV----------GFAANGNAHESLVYFRKMQE-EGFKPNAVTFTGALTACSHVG 296
Query: 151 EVRNCQLIHGYGEKRGFN-AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWT 209
V L KR +N + I CL+D Y++ G + A K+ + + + N V
Sbjct: 297 LVDE-GLRFFQSMKRDYNISPRIEHYGCLVDLYSRAGRLEDALKVVQSMPM-KPNEVVIG 354
Query: 210 TIISGFAMHG 219
++++ HG
Sbjct: 355 SLLAACRNHG 364
>gi|225450551|ref|XP_002277430.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 500
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 94/319 (29%), Positives = 164/319 (51%), Gaps = 39/319 (12%)
Query: 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF 74
H P P D++T+ FL++ C L++ G +LH K G HV+V +L +Y S
Sbjct: 82 HGPPP---DTYTFPFLLKACSALAHLPKGQELHCQALKFGLGGHVFVENSLIHLYGSNSG 138
Query: 75 LKDSSKLFDELPERNLVTWNVIIT---------------------GLVKWTGIIDGYSRM 113
+ + ++FD + R++ +W ++ ++ ++ +I Y R
Sbjct: 139 MDSARRVFDGMGYRDIASWTTLLACYANSCSVKAARKVFDEMPERSVISYSAMIAAYVRG 198
Query: 114 NRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIH 173
NR EAL LFR + + + EPS+ +++VL A G + + ++ Y + + D
Sbjct: 199 NRFREALDLFRELFSVK-IEPSDSCVMSVLCACANLGALDVGRWVYSYVCQSKGDYVDSR 257
Query: 174 VSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
++ LID + KCG I A +FE K++ WT ++SG AMHG+G++ +E FE+M
Sbjct: 258 IATALIDMFFKCGSIEHALLVFE--GAKEKHVGEWTAMLSGLAMHGLGEQLIEAFEKMVD 315
Query: 234 VGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLE 282
G+KPN + EGL +FD+M + V P ++H+GC++D+L RAG ++
Sbjct: 316 SGVKPNGVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVEHFGCVVDLLGRAGLID 375
Query: 283 QAEEVASGIPSQITNVVVW 301
QA ++ S +P + N +W
Sbjct: 376 QAMQLISEMPFE-PNAAIW 393
>gi|356518836|ref|XP_003528083.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 568
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 101/306 (33%), Positives = 169/306 (55%), Gaps = 32/306 (10%)
Query: 10 IYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY 69
++ H H P FD FT+ ++++ + +H + K+GF S++YV AL + Y
Sbjct: 85 LFSHMHRTNVP-FDHFTFPLILKSSKLNPH-----CIHTLVLKLGFHSNIYVQNALINSY 138
Query: 70 VSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC 129
+ G L S KLFDE+P R+L++W+ +I+ K G+ D EAL LF++M
Sbjct: 139 GTSGSLHASLKLFDEMPRRDLISWSSLISCFAK-RGLPD---------EALTLFQQMQLK 188
Query: 130 EYT-EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
E P + +L+V+ A+ G + +H + + G N + + + LID Y++CG I
Sbjct: 189 ESDILPDGVVMLSVISAVSSLGALELGIWVHAFISRIGVN-LTVSLGSALIDMYSRCGDI 247
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG--- 245
+ K+F++ + +N+V+WT +I+G A+HG G+EA+E F M + GLKP+R +G
Sbjct: 248 DRSVKVFDE--MPHRNVVTWTALINGLAVHGRGREALEAFYDMVESGLKPDRIAFMGVLV 305
Query: 246 --------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITN 297
EEG + F M E + P ++HYGC++D+L RAG + +A + G+ + N
Sbjct: 306 ACSHGGLVEEGRRVFSSMWSEYGIEPALEHYGCMVDLLGRAGMVLEAFDFVEGMRVR-PN 364
Query: 298 VVVWRT 303
V+WRT
Sbjct: 365 SVIWRT 370
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 98/232 (42%), Gaps = 25/232 (10%)
Query: 8 QQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGD 67
QQ+ + LP D +I +L LG +HA S++G V + +AL D
Sbjct: 183 QQMQLKESDILP---DGVVMLSVISAVSSLGALELGIWVHAFISRIGVNLTVSLGSALID 239
Query: 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA 127
MY G + S K+FDE+P RN+VT WT +I+G + R EAL F M
Sbjct: 240 MYSRCGDIDRSVKVFDEMPHRNVVT----------WTALINGLAVHGRGREALEAFYDMV 289
Query: 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHG-----YGEKRGFNAFDIHVSNCLIDTY 182
+P I + VL A G V + + YG + + C++D
Sbjct: 290 ESGL-KPDRIAFMGVLVACSHGGLVEEGRRVFSSMWSEYGIEPALEHY-----GCMVDLL 343
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
+ G + A E V R N V W T++ H + A + ER++++
Sbjct: 344 GRAGMVLEAFDFVEGMRV-RPNSVIWRTLLGACVNHNLLVLAEKAKERIKEL 394
>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g15930-like [Cucumis
sativus]
Length = 744
Score = 160 bits (405), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 156/310 (50%), Gaps = 37/310 (11%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
+ T ++ C L G ++H+ +S++ + A+ DMY G + + +F
Sbjct: 240 TVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFR 299
Query: 84 ELPERNLVTWNVIITGL---------------------VKWTGIIDGYSRMNRSNEALAL 122
+ R++++W I++G V WT +IDGY R NR EAL L
Sbjct: 300 SMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALEL 359
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
FR M A +P E T+++VL A G + + I Y ++ D+ V N LID Y
Sbjct: 360 FRNMQATN-VKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKN-DLFVRNALIDMY 417
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW 242
KCG + A +F + S +++ +WT +I G A++G G++A++ F M K + P+
Sbjct: 418 FKCGDVDKAESIFREMS--QRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEIT 475
Query: 243 RIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
IG ++G K+F +M + + P+I HYGCL+D+L RAGRL++A EV +
Sbjct: 476 YIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENM 535
Query: 292 PSQITNVVVW 301
P + N +VW
Sbjct: 536 PIK-ANSIVW 544
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 145/303 (47%), Gaps = 33/303 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +T+ FL + G QLH K G Q +V+V+TAL MY+ G L + +F
Sbjct: 138 DRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVF 197
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D P+ +++TWN+II+ Y+++ + E+ LF M + P+ +T++ V
Sbjct: 198 DVCPKADVITWNMIIS----------AYNKVGKFEESRRLFLVMED-KQVLPTTVTLVLV 246
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A K ++R + +H Y + + ++ + N +ID YA CG + SA +F S++
Sbjct: 247 LSACSKLKDLRTGKKVHSYVKNCKVES-NLVLENAMIDMYADCGEMDSALGIFR--SMNN 303
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG----------EEGLKFF 252
++++SWTTI+SGF G A F++M + K SW +E L+ F
Sbjct: 304 RDIISWTTIVSGFTNLGEIDVARNYFDKMPE---KDYVSWTAMIDGYIRSNRFKEALELF 360
Query: 253 DKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP-SQITNVVVWRTGFLRLLIN 311
M + V PD ++ G LE E + + I ++I N + R LI+
Sbjct: 361 RNM-QATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNA----LID 415
Query: 312 SYF 314
YF
Sbjct: 416 MYF 418
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 84/193 (43%), Gaps = 14/193 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT ++ C L LG + + ++ ++V AL DMY G + + +F
Sbjct: 371 DEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIF 430
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E+ +R+ TW +I GL ++G+ +AL +F M P EIT + V
Sbjct: 431 REMSQRDKFTWTAMIVGLA-----VNGH-----GEKALDMFSNMLKASIL-PDEITYIGV 479
Query: 143 LPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G V + + + G H CL+D A+ G + A ++ E+ +
Sbjct: 480 LSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYG-CLVDLLARAGRLKEAYEVIENMPI- 537
Query: 202 RKNLVSWTTIISG 214
+ N + W +++G
Sbjct: 538 KANSIVWGALLAG 550
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 109/253 (43%), Gaps = 37/253 (14%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT 132
G + + +LFDE+PE NL WN +I GYSR++ ++L+ M
Sbjct: 87 GDFQYARRLFDEIPEPNLFIWNTMIR----------GYSRLDFPQLGVSLYLEMLR-RGV 135
Query: 133 EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSAS 192
+P T + ++ + + +HG+ K G +++ V L+ Y CG + +A
Sbjct: 136 KPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQ-YNVFVHTALVQMYLLCGQLDTAR 194
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN------------- 239
+F+ + ++++W IIS + G +E+ F M+ + P
Sbjct: 195 GVFD--VCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSK 252
Query: 240 -RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNV 298
+ R G++ + V+ C+V ++ +ID+ G ++ A + + ++ ++
Sbjct: 253 LKDLRTGKKVHSY----VKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNR--DI 306
Query: 299 VVWRT---GFLRL 308
+ W T GF L
Sbjct: 307 ISWTTIVSGFTNL 319
>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Cucumis sativus]
Length = 723
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 95/310 (30%), Positives = 156/310 (50%), Gaps = 37/310 (11%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
+ T ++ C L G ++H+ +S++ + A+ DMY G + + +F
Sbjct: 219 TVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFR 278
Query: 84 ELPERNLVTWNVIITGL---------------------VKWTGIIDGYSRMNRSNEALAL 122
+ R++++W I++G V WT +IDGY R NR EAL L
Sbjct: 279 SMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALEL 338
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
FR M A +P E T+++VL A G + + I Y ++ D+ V N LID Y
Sbjct: 339 FRNMQATN-VKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKN-DLFVRNALIDMY 396
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW 242
KCG + A +F + S +++ +WT +I G A++G G++A++ F M K + P+
Sbjct: 397 FKCGDVDKAESIFREMS--QRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEIT 454
Query: 243 RIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
IG ++G K+F +M + + P+I HYGCL+D+L RAGRL++A EV +
Sbjct: 455 YIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENM 514
Query: 292 PSQITNVVVW 301
P + N +VW
Sbjct: 515 PIK-ANSIVW 523
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 87/303 (28%), Positives = 145/303 (47%), Gaps = 33/303 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +T+ FL + G QLH K G Q +V+V+TAL MY+ G L + +F
Sbjct: 117 DRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVF 176
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D P+ +++TWN+II+ Y+++ + E+ LF M + P+ +T++ V
Sbjct: 177 DVCPKADVITWNMIIS----------AYNKVGKFEESRRLFLVMED-KQVLPTTVTLVLV 225
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A K ++R + +H Y + + ++ + N +ID YA CG + SA +F S++
Sbjct: 226 LSACSKLKDLRTGKKVHSYVKNCKVES-NLVLENAMIDMYADCGEMDSALGIFR--SMNN 282
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG----------EEGLKFF 252
++++SWTTI+SGF G A F++M + K SW +E L+ F
Sbjct: 283 RDIISWTTIVSGFTNLGEIDVARNYFDKMPE---KDYVSWTAMIDGYIRSNRFKEALELF 339
Query: 253 DKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP-SQITNVVVWRTGFLRLLIN 311
M + V PD ++ G LE E + + I ++I N + R LI+
Sbjct: 340 RNM-QATNVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNA----LID 394
Query: 312 SYF 314
YF
Sbjct: 395 MYF 397
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 84/193 (43%), Gaps = 14/193 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT ++ C L LG + + ++ ++V AL DMY G + + +F
Sbjct: 350 DEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIF 409
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E+ +R+ TW +I GL ++G+ +AL +F M P EIT + V
Sbjct: 410 REMSQRDKFTWTAMIVGLA-----VNGHGE-----KALDMFSNMLKASIL-PDEITYIGV 458
Query: 143 LPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G V + + + G H CL+D A+ G + A ++ E+ +
Sbjct: 459 LSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYG-CLVDLLARAGRLKEAYEVIENMPI- 516
Query: 202 RKNLVSWTTIISG 214
+ N + W +++G
Sbjct: 517 KANSIVWGALLAG 529
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 109/253 (43%), Gaps = 37/253 (14%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT 132
G + + +LFDE+PE NL WN +I GYSR++ ++L+ M
Sbjct: 66 GDFQYARRLFDEIPEPNLFIWNTMIR----------GYSRLDFPQLGVSLYLEMLR-RGV 114
Query: 133 EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSAS 192
+P T + ++ + + +HG+ K G +++ V L+ Y CG + +A
Sbjct: 115 KPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGLQ-YNVFVHTALVQMYLLCGQLDTAR 173
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN------------- 239
+F+ + ++++W IIS + G +E+ F M+ + P
Sbjct: 174 GVFD--VCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSK 231
Query: 240 -RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNV 298
+ R G++ + V+ C+V ++ +ID+ G ++ A + + ++ ++
Sbjct: 232 LKDLRTGKKVHSY----VKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNR--DI 285
Query: 299 VVWRT---GFLRL 308
+ W T GF L
Sbjct: 286 ISWTTIVSGFTNL 298
>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g44230-like [Glycine max]
Length = 617
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 161/312 (51%), Gaps = 38/312 (12%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHA-VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
SFT+S L C + + LG QLHA GF S +YVN A+ DMYV G L+ + +F
Sbjct: 109 SFTFSALFSACAAVRHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVF 168
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
DE+PER++++W +I +V WT ++ GY++ +AL
Sbjct: 169 DEMPERDVISWTGLIVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALE 228
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD-IHVSNCLID 180
+FRR+ E E E+T++ V+ A + G + I E GF D + V + LID
Sbjct: 229 VFRRLRD-EGVEIDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALID 287
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
Y+KCG + A +F+ + +N+ S++++I GFA+HG + A++ F M + G+KPN
Sbjct: 288 MYSKCGNVEEAYDVFK--GMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNH 345
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
+G ++G + F M + V P + Y C+ D+L RAG LE+A ++
Sbjct: 346 VTFVGVLTACSHAGLVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVE 405
Query: 290 GIPSQITNVVVW 301
+P + ++ VW
Sbjct: 406 TMPME-SDGAVW 416
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 57/294 (19%), Positives = 104/294 (35%), Gaps = 76/294 (25%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQ--SHVYVNTALGDMYVSLGFLKDSS 79
D T +I C L + + GF +V V +AL DMY G ++++
Sbjct: 240 IDEVTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAY 299
Query: 80 KLFDELPERNLVTWNVIITGL-------------------------VKWTGIIDGYSRMN 114
+F + ERN+ +++ +I G V + G++ S
Sbjct: 300 DVFKGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAG 359
Query: 115 RSNEALALFRRMAACEYTEPSE-------------------ITILAVLP-----AIWKNG 150
++ LF M C P+ + ++ +P A+W G
Sbjct: 360 LVDQGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVW--G 417
Query: 151 EVRNCQLIHG------YGEKRGFNAFDIHVSNCLI--DTYAKCG---CIFSASKLFEDTS 199
+ +HG KR F ++ N L+ +TYA G + KL + +
Sbjct: 418 ALLGASHVHGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKN 477
Query: 200 VDRKNLVSWTTIISGF------------AMHGMGKEAVENFERMQKVGLKPNRS 241
+ + SW +G ++ + KE + ER++ +G +PN S
Sbjct: 478 LKKNPGWSWVEAKNGMIHKFVAGDVSHPKINEIKKELNDLLERLKGIGYQPNLS 531
>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
Length = 795
Score = 160 bits (405), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 151/276 (54%), Gaps = 25/276 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S T ++ C L G Q+H + GF+S+ V AL +MY G + + KLF
Sbjct: 321 NSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLF 380
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ +P++N+V WN II+ GYS+ +EALALF M A + +P I++V
Sbjct: 381 ERMPKKNVVAWNAIIS----------GYSQHGHPHEALALFIEMQA-QGIKPDSFAIVSV 429
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LPA + + IHGY + GF + ++ V L+D YAKCG + +A KLFE +
Sbjct: 430 LPACAHFLALEQGKQIHGYTIRSGFES-NVVVGTGLVDIYAKCGNVNTAQKLFE--RMPE 486
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKF 251
+++VSWTT+I + +HG G++A+ F +MQ+ G K + + ++GL++
Sbjct: 487 QDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQY 546
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
F M + + P ++HY CL+D+L RAG L++A +
Sbjct: 547 FQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGI 582
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 118/217 (54%), Gaps = 14/217 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D + +I+ C + S G ++H GF+S V V TAL MY G L+++ ++F
Sbjct: 119 DKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVF 178
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +P+R++V+WN II GYS+ + EALALF M +P+ T+++V
Sbjct: 179 DRMPKRDVVSWNAIIA----------GYSQNGQPYEALALFSEMQV-NGIKPNSSTLVSV 227
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+P + + IH Y + G + D+ V N L++ YAKCG + +A KLFE +
Sbjct: 228 MPVCAHLLALEQGKQIHCYAIRSGIES-DVLVVNGLVNMYAKCGNVNTAHKLFERMPI-- 284
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+++ SW II G++++ EA+ F RMQ G+KPN
Sbjct: 285 RDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPN 321
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 117/263 (44%), Gaps = 30/263 (11%)
Query: 92 TWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGE 151
T I V W I GY + N+AL L+ +M P ++ L+V+ A +
Sbjct: 77 TQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTG-INPDKLVFLSVIKACGSQSD 135
Query: 152 VRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTI 211
++ + +H RGF + D+ V L Y KCG + +A ++F+ + ++++VSW I
Sbjct: 136 LQAGRKVHEDIIARGFES-DVIVGTALASMYTKCGSLENARQVFD--RMPKRDVVSWNAI 192
Query: 212 ISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECE 260
I+G++ +G EA+ F MQ G+KPN S + E+G + +
Sbjct: 193 IAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRS-G 251
Query: 261 VLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITL 320
+ D+ L+++ + G + A ++ +P I +V W +I Y +L
Sbjct: 252 IESDVLVVNGLVNMYAKCGNVNTAHKLFERMP--IRDVASWNA-----IIGGY-----SL 299
Query: 321 NSQRLFFFPAALYALTQILGFKP 343
NSQ A + Q+ G KP
Sbjct: 300 NSQH--HEALAFFNRMQVRGIKP 320
>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Glycine max]
Length = 628
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/325 (30%), Positives = 167/325 (51%), Gaps = 48/325 (14%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76
P+ P ++FT S L++ C +P HA+ K G SH+YV+T L D Y G +
Sbjct: 116 PIQP--NAFTLSSLLKACTL--HPARAVHSHAI--KFGLSSHLYVSTGLVDAYARGGDVA 169
Query: 77 DSSKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNR 115
+ KLFD +PER+LV++ ++T K W +IDGY++
Sbjct: 170 SAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGC 229
Query: 116 SNEALALFRRMAACEY------TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNA 169
NEAL FR+M P+EIT++AVL + + G + + +H Y E G
Sbjct: 230 PNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIK- 288
Query: 170 FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFE 229
++ V L+D Y KCG + A K+F+ ++ K++V+W ++I G+ +HG EA++ F
Sbjct: 289 VNVRVGTALVDMYCKCGSLEDARKVFD--VMEGKDVVAWNSMIMGYGIHGFSDEALQLFH 346
Query: 230 RMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERA 278
M +G+KP+ + +G + FD M + + P ++HYGC++++L RA
Sbjct: 347 EMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRA 406
Query: 279 GRLEQAEEVASGIPSQITNVVVWRT 303
GR+++A ++ + + + V+W T
Sbjct: 407 GRMQEAYDLVRSMEVE-PDPVLWGT 430
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 101/204 (49%), Gaps = 21/204 (10%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
Q+HA + G H +N L Y SLG L S LF P N+ WT
Sbjct: 41 QIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFL----------WT 90
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
II+ ++ + + AL+ + +M +P+ T+ ++L A + + +H + K
Sbjct: 91 HIINAHAHFDLFHHALSYYSQMLT-HPIQPNAFTLSSLLKAC----TLHPARAVHSHAIK 145
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
G ++ ++VS L+D YA+ G + SA KLF+ ++ ++LVS+T +++ +A HGM EA
Sbjct: 146 FGLSSH-LYVSTGLVDAYARGGDVASAQKLFD--AMPERSLVSYTAMLTCYAKHGMLPEA 202
Query: 225 VENFERMQKVGLKPNRSWRIGEEG 248
FE M G+K W + +G
Sbjct: 203 RVLFEGM---GMKDVVCWNVMIDG 223
>gi|356522492|ref|XP_003529880.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g08510-like [Glycine max]
Length = 474
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/325 (31%), Positives = 165/325 (50%), Gaps = 40/325 (12%)
Query: 9 QIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDM 68
QI +H P + T++FL C +LS +LG LH F K GF+ ++ TAL DM
Sbjct: 37 QIRLHGFLP-----NQHTFNFLFSACTSLSSSSLGQMLHTHFIKSGFEPDLFAATALLDM 91
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGL---------------------VKWTGII 107
Y +G L+ + KLFDE+P R + WN ++ GL V WT +I
Sbjct: 92 YAKVGALELARKLFDEMPVRGVPRWNAMMAGLARFGDMDGALELFXSMPSRNVVPWTTMI 151
Query: 108 DGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF 167
GYS + ++AL LF M + P+ +T++++LPA + Q + Y K GF
Sbjct: 152 SGYSWNKQYDKALGLFLGMEQEKGIMPNAVTLVSILPACANLXALEIGQRVEAYARKNGF 211
Query: 168 NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVEN 227
+ + SN +++ Y KCG I +A ++F + R NL SW +++ G A+HG +A+E
Sbjct: 212 FK-NXYASNAVLEMYVKCGKIDAAWRVFNEIGSLR-NLCSWNSMVVGLAVHGECCKALEL 269
Query: 228 FERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILE 276
+++M G P+ +G ++G F ++P ++HYGC++D+L
Sbjct: 270 YDQMLGEGTSPDDVTFVGLLLACTQGGMVKKGRHIFKSKTTSFYIIPKLEHYGCMVDLLG 329
Query: 277 RAGRLEQAEEVASGIPSQITNVVVW 301
RAG+L +A EV + S + V+W
Sbjct: 330 RAGQLREAYEVIQSM-SMKPDSVIW 353
>gi|347954512|gb|AEP33756.1| chloroplast biogenesis 19, partial [Raphanus sativus]
Length = 476
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 95/275 (34%), Positives = 149/275 (54%), Gaps = 20/275 (7%)
Query: 42 LGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG- 99
LG LH K+GF ++HV V TA+ MY + + +FD + + N VTWN +I G
Sbjct: 85 LGDSLHGYACKLGFDRNHVMVGTAILGMYSKRRRFRKARLVFDRMGDXNSVTWNTMIDGY 144
Query: 100 ---LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQ 156
L+ T +I+G+ + + EALA FR M EP + I+A L A G +
Sbjct: 145 XRDLISXTXMINGFVKKGLNEEALAWFREMQVSG-VEPDYVAIIAALAACTNLGALSFGL 203
Query: 157 LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFA 216
+H Y + F ++ VSN LID Y +CGC+ A ++F+ ++++ +VSW ++I GFA
Sbjct: 204 WVHRYVVSQDFKN-NVRVSNSLIDLYCRCGCVEFARQVFD--KMEKRTVVSWNSVIVGFA 260
Query: 217 MHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDI 265
+G E++ F +MQ+ KP+ G EEG+++F+ M + + P I
Sbjct: 261 ANGHAHESLVYFRKMQEERFKPDAVTFTGALTACSHVGLVEEGVRYFEAMKRDYRISPRI 320
Query: 266 KHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
+HYGCL+D+ RAGRLE A +V +P + VV+
Sbjct: 321 EHYGCLVDLYSRAGRLEDALKVVESMPMKPNEVVI 355
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 93/202 (46%), Gaps = 17/202 (8%)
Query: 33 TCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVT 92
C L + G +H F+++V V+ +L D+Y G ++ + ++FD++ +R +V+
Sbjct: 192 ACTNLGALSFGLWVHRYVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTVVS 251
Query: 93 WNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEV 152
WN +I G++ ++E+L FR+M E +P +T L A G V
Sbjct: 252 WNSVIV----------GFAANGHAHESLVYFRKMQE-ERFKPDAVTFTGALTACSHVGLV 300
Query: 153 RNCQLIHGYGEKRGFN-AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTI 211
+ + KR + + I CL+D Y++ G + A K+ E + + N V ++
Sbjct: 301 EE-GVRYFEAMKRDYRISPRIEHYGCLVDLYSRAGRLEDALKVVESMPM-KPNEVVIGSL 358
Query: 212 ISGFAMHGMGKEAVENFERMQK 233
++ HG E ERM K
Sbjct: 359 LAACRTHGNDTELA---ERMMK 377
>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 705
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 158/309 (51%), Gaps = 40/309 (12%)
Query: 13 HSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL 72
H+ SP + FT+ F+++ C + LG +HA K GF+ +V L MY
Sbjct: 221 HAVSP-----NKFTFPFVLKACAGMMRLELGGAVHASMVKFGFEEDPHVRNTLVHMYCCC 275
Query: 73 GFLKDSS-------KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRR 125
+D S K+FDE P ++ VTW + +I GY+R S A+ LFR
Sbjct: 276 --CQDGSSGPVSAKKVFDESPVKDSVTW----------SAMIGGYARAGNSARAVTLFRE 323
Query: 126 MAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC 185
M P EIT+++VL A G + + + Y E++ + + N LID +AKC
Sbjct: 324 MQVTGVC-PDEITMVSVLSACADLGALELGKWLESYIERKNI-MRSVELCNALIDMFAKC 381
Query: 186 GCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG 245
G + A K+F + V + +VSWT++I G AMHG G EAV F+ M + G+ P+ IG
Sbjct: 382 GDVDRAVKVFREMKV--RTIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIG 439
Query: 246 -----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
++G +F+ M ++P I+HYGC++D+L RAGR+ +A E +P +
Sbjct: 440 VLSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPVE 499
Query: 295 ITNVVVWRT 303
N V+WR+
Sbjct: 500 -PNQVIWRS 507
>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 157/304 (51%), Gaps = 36/304 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++FT+SF+IR C+ + +G H K G++S+ +V L +Y + GF+ + +F
Sbjct: 111 NNFTFSFVIRACIDVFNLQMGLCFHGQVVKFGWESYDFVQNGLIHLYANCGFMDLARNMF 170
Query: 83 DELPERNLVTWNVIITGL---------------------VKWTGIIDGYSRMNRSNEALA 121
D +R++VTW +I+G V W +I GY R+ EAL
Sbjct: 171 DMSIKRDVVTWTCLISGYLNSGQVLIARELFDRMPEKNPVSWGALIAGYVRIGFFKEALE 230
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
+F M + + +I+ L A G + + IH Y KR + D + LID
Sbjct: 231 VFYDMQVSGF-RLNRASIVGALTACAFLGALDQGRWIHAY-VKRHHMSLDRMLGTALIDM 288
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR- 240
YAKCGCI A +F++ +D +++ ++T +ISG A H + A++ F RMQ G+ PN
Sbjct: 289 YAKCGCIEMACSVFDE--MDDRDVYAFTCLISGLANHDKSEAAIDLFNRMQDEGVVPNEV 346
Query: 241 --------SWRIG--EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
R+G +EGL+ F+ M + P I+HYGCL+D+L RAG++E+A++V
Sbjct: 347 TFVCVLNACSRMGMVDEGLRIFESMSNRYVIEPQIQHYGCLVDLLGRAGKIEEAKQVVRE 406
Query: 291 IPSQ 294
+P Q
Sbjct: 407 MPLQ 410
>gi|347954492|gb|AEP33746.1| chloroplast biogenesis 19, partial [Barbarea verna]
Length = 494
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 102/313 (32%), Positives = 156/313 (49%), Gaps = 39/313 (12%)
Query: 23 DSFTYSFLIRTC--VTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSS 79
+ T+ L+ C V+ LG LH K+G ++HV V TA+ MY G +
Sbjct: 64 NHITFIALLSGCGDVSSGSEALGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRFGKAR 123
Query: 80 KLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNE 118
+FD + ++N VTWN +I G L+ WT +I+G+ + E
Sbjct: 124 LVFDFMEDKNSVTWNTMIDGYMRSGQVNNAVKLFDEMPERDLISWTAMINGFVKKGFHEE 183
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
ALA FR M +P + I+A L A G + +H Y + F +I VSN L
Sbjct: 184 ALAWFREMQ-ISGVKPDYVAIIAALAACTHLGALSFGLWVHRYVMNQDFKN-NIRVSNSL 241
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
ID Y +CGC+ A ++F+ ++++ +VSW ++I GFA +G E++ F +MQ+ G KP
Sbjct: 242 IDLYCRCGCVEFAREVFD--KMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKP 299
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ G EEGL++F M + + P I+HYGCL+D+ RAGRLE A V
Sbjct: 300 DAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEDALNV 359
Query: 288 ASGIPSQITNVVV 300
+P + VV+
Sbjct: 360 VQSMPMKPNEVVI 372
>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
Length = 574
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 148/273 (54%), Gaps = 25/273 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+F+ F+I+ C +G +H+ K G +V + L DMY G + ++ +LF
Sbjct: 100 DNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLF 159
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +P+++LVT V+I G Y+ + NE+ LF +M + P ++ ++ +
Sbjct: 160 DRMPKKDLVTRTVMIAG----------YAECGKPNESWVLFDQMRRDGFV-PDKVAMVTI 208
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A K G + +L+H Y R + + D+ + +ID YAKCG I S+ ++F+ +++
Sbjct: 209 VNACAKLGAMNKARLVHDYVCARRY-SLDVELGTAMIDMYAKCGSIDSSREIFD--RMEQ 265
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN++SW+ +I + HG G+EA+E F M G+ PNR I ++GL+
Sbjct: 266 KNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQL 325
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
F M V PD+KHY C++D+L RAGRL+QA
Sbjct: 326 FSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQA 358
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 124/267 (46%), Gaps = 26/267 (9%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
Q+HA + G + V L M L + LF+++ ER+ V+W+V+I G VK
Sbjct: 21 QVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKNG 80
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
Y R FR + ++P ++ V+ A + +LIH K
Sbjct: 81 ----DYER------CFQTFRELIRAG-SKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLK 129
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
G + D V + L+D YAKCG I +A +LF+ + +K+LV+ T +I+G+A G E+
Sbjct: 130 NGLH-LDNFVCSTLVDMYAKCGMIDNAKQLFD--RMPKKDLVTRTVMIAGYAECGKPNES 186
Query: 225 VENFERMQKVGLKPNRSWRI------GEEGLKFFDKMVEE--C--EVLPDIKHYGCLIDI 274
F++M++ G P++ + + G ++V + C D++ +ID+
Sbjct: 187 WVLFDQMRRDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDM 246
Query: 275 LERAGRLEQAEEVASGIPSQITNVVVW 301
+ G ++ + E+ + + NV+ W
Sbjct: 247 YAKCGSIDSSREIFDRMEQK--NVISW 271
>gi|125603908|gb|EAZ43233.1| hypothetical protein OsJ_27833 [Oryza sativa Japonica Group]
Length = 567
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 139/255 (54%), Gaps = 39/255 (15%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYS 111
G L + K+FDE+P RNLV+WN ++ G +V WT +I GY+
Sbjct: 240 GLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYA 299
Query: 112 RMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF---N 168
+ R + L LFR M +P+E+T+++VL A + + +H + +K N
Sbjct: 300 QAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNN 359
Query: 169 AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENF 228
+++ + LID YAKCG A K+F S+DRKN+ +W +I+ AM+G +++V+ F
Sbjct: 360 EYNLGAA--LIDMYAKCGRTDIAVKIF--NSLDRKNVSAWNALITRLAMNGNARDSVDAF 415
Query: 229 ERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILER 277
E+M++ G KPN +G +EG + F M C V P++KHYGC++D+L R
Sbjct: 416 EQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGR 475
Query: 278 AGRLEQAEEVASGIP 292
AG LE+AEE+ +P
Sbjct: 476 AGLLEEAEELIRSMP 490
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 117/292 (40%), Gaps = 68/292 (23%)
Query: 23 DSFTYSFLIRTCVTL-SYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D FT L+ + L ++P G Q+HA + GF + V+V AL MY G L+D++ +
Sbjct: 93 DRFTLPPLLGSAGKLPAFPRTGAQVHAQAVRRGFLADVFVVNALLAMY---GALRDAASM 149
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
R + + +V W +I GY + A +F M
Sbjct: 150 ------REVFGSCAGVADVVSWNTVIGGYVKCGEMESAKRVFDEMPR------------- 190
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS-NCLIDTYAKCGCIFSASKLFEDTSV 200
+NG VS + ++ YA G + A ++F+
Sbjct: 191 ------RNG-----------------------VSWSTMVGGYAAAGELDVAREMFDRMPA 221
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKF---FDKMVE 257
+N+V+W ++++GFA HG+ A + F+ M L SW G D E
Sbjct: 222 IGRNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLV---SWNAMLRGYSVNSDMDGARE 278
Query: 258 ECEVLP--DIKHYGCLIDILERAGRLEQAEEVASGI-------PSQITNVVV 300
+V+P D+ + C+I +AGR + E+ + P+++T V V
Sbjct: 279 LFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSV 330
>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15930-like [Glycine max]
Length = 712
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 155/311 (49%), Gaps = 37/311 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S T ++ C L G ++ + + ++ + L DM+ + G + ++ +F
Sbjct: 207 NSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVF 266
Query: 83 DELPERNLVTWNVIITGL---------------------VKWTGIIDGYSRMNRSNEALA 121
D + R++++W I+TG V WT +IDGY RMNR EALA
Sbjct: 267 DNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALA 326
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LFR M +P E T++++L A G + + + Y +K D V N LID
Sbjct: 327 LFREMQMSN-VKPDEFTMVSILTACAHLGALELGEWVKTYIDKNSIKN-DTFVGNALIDM 384
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
Y KCG + A K+F++ + K+ +WT +I G A++G G+EA+ F M + + P+
Sbjct: 385 YFKCGNVGKAKKVFKE--MHHKDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEI 442
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
IG E+G FF M + + P++ HYGC++D+L RAGRLE+A EV
Sbjct: 443 TYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVN 502
Query: 291 IPSQITNVVVW 301
+P + N +VW
Sbjct: 503 MPVK-PNSIVW 512
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/249 (25%), Positives = 120/249 (48%), Gaps = 27/249 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQL--HAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
D FT+ FL++ G L HAV K GF S+++V A M+ + + K
Sbjct: 106 DRFTFPFLLKGFTRNMALQYGKVLLNHAV--KHGFDSNLFVQKAFIHMFSLCRLVDLARK 163
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD +VTWN++++ GY+R+ + ++ LF M P+ +T++
Sbjct: 164 VFDMGDAWEVVTWNIMLS----------GYNRVKQFKKSKMLFIEMEK-RGVSPNSVTLV 212
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+L A K ++ + I+ Y G ++ + N LID +A CG + A +F++ +
Sbjct: 213 LMLSACSKLKDLEGGKHIYKYING-GIVERNLILENVLIDMFAACGEMDEAQSVFDN--M 269
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---SWRIGEEGLKFFDKMVE 257
++++SWT+I++GFA G A + F+++ P R SW +G ++ +E
Sbjct: 270 KNRDVISWTSIVTGFANIGQIDLARKYFDQI------PERDYVSWTAMIDGYLRMNRFIE 323
Query: 258 ECEVLPDIK 266
+ +++
Sbjct: 324 ALALFREMQ 332
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 107/241 (44%), Gaps = 29/241 (12%)
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
+ ++FD +P+ L WN +I GYSR+N ++++ M A +P
Sbjct: 60 ARQVFDAIPQPTLFIWNTMIK----------GYSRINHPQNGVSMYLLMLASN-IKPDRF 108
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
T +L +N ++ +++ + K GF++ ++ V I ++ C + A K+F+
Sbjct: 109 TFPFLLKGFTRNMALQYGKVLLNHAVKHGFDS-NLFVQKAFIHMFSLCRLVDLARKVFDM 167
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI----------GEE 247
D +V+W ++SG+ K++ F M+K G+ PN + E
Sbjct: 168 G--DAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLE 225
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR---TG 304
G K K + V ++ LID+ G +++A+ V + ++ +V+ W TG
Sbjct: 226 GGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNR--DVISWTSIVTG 283
Query: 305 F 305
F
Sbjct: 284 F 284
>gi|115476560|ref|NP_001061876.1| Os08g0434000 [Oryza sativa Japonica Group]
gi|42407498|dbj|BAD10615.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|42409483|dbj|BAD09839.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113623845|dbj|BAF23790.1| Os08g0434000 [Oryza sativa Japonica Group]
Length = 601
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 152/293 (51%), Gaps = 28/293 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++F+ S ++ C L++ QLHA G + T+L Y + G + K+F
Sbjct: 127 NAFSLSIVLGHCRALAH---ARQLHANVVAEGHSPDALLATSLVSSYAACGDGDSARKVF 183
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY-TEPSEITILA 141
DE+P R+ + WNV+IT Y+R R+ +AL LF M E EP ++T +
Sbjct: 184 DEMPVRDTIAWNVLITC----------YTRNRRTKDALKLFDAMRGGENGAEPDDVTCIL 233
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+L A G + + + Y G+ ++ V N LI Y KCGC+ A ++F +T
Sbjct: 234 LLQACTSLGALDFGEKVWEYAVDHGYGG-ELKVRNSLITMYTKCGCVDKAYQVFCETP-- 290
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
+K++V+W+ +ISG A +G GK+A+ FE M + G+ P+ G +EG K
Sbjct: 291 KKSVVTWSAMISGLASNGFGKDAISAFEEMGRSGVAPDEQTFTGVLSACSHSGLVDEGFK 350
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
FFD M E ++ P++ HYGC++D++ RAG L+QA E+ + +WRT
Sbjct: 351 FFDIMCYEYQLKPNVHHYGCMVDLMGRAGLLDQAYELVVKDMRVAPDATIWRT 403
>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
mitochondrial [Vitis vinifera]
Length = 673
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 153/283 (54%), Gaps = 25/283 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FT++ +I +C L LG Q+H + ++ F V V +AL DMY ++D+ K F
Sbjct: 278 DNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAF 337
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + +N+V+W +I GY + EA+ L + M YT P E+ + ++
Sbjct: 338 DGMIVKNIVSWTTMIV----------GYGQHGDGKEAMRLLQEMIRV-YTYPDELALASI 386
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + +H Y + GF AF + ++N L+ Y+KCG I SA + F +SV
Sbjct: 387 LSSCGNLSATSEVVQVHAYVVENGFEAF-LSIANALVSAYSKCGSIGSAFQSF--SSVAE 443
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGE-----------EGLKF 251
+++SWT+++ +A HG+ KE VE FE+M ++P++ +G EGL +
Sbjct: 444 PDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLSACAHGGFVLEGLHY 503
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
F+ M+ +++PD +HY C+ID+L RAG L++A + + +P +
Sbjct: 504 FNLMINVYQIMPDSEHYTCIIDLLGRAGFLDEAINLLTSMPVE 546
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 108/218 (49%), Gaps = 14/218 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T + L+R + L+ + QLH K GF S+ +V +AL D Y G + ++ F
Sbjct: 177 NCITLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAF 236
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ R+LV WNV+++ Y+ +A +F+ M E + T ++
Sbjct: 237 DEVSSRDLVLWNVMVS----------CYALNGVQGKAFGVFKLMRL-EGVKGDNFTFTSM 285
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ + G + +HG + F+ D+ V++ L+D Y+K I A K F+ V
Sbjct: 286 INSCGVLGSCGLGKQVHGLIIRLSFD-LDVLVASALVDMYSKNENIEDARKAFDGMIV-- 342
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
KN+VSWTT+I G+ HG GKEA+ + M +V P+
Sbjct: 343 KNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTYPDE 380
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 140/291 (48%), Gaps = 25/291 (8%)
Query: 26 TYSF---LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
T+SF ++ L + + G QLHA K+G + + + + +YV D K+F
Sbjct: 72 THSFSSHALKISAKLGFLHGGKQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKMF 131
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+P +N+V+WN +I G+++G + FR+M E P+ IT+ +
Sbjct: 132 DEMPLKNVVSWNTLI------CGVVEGNCKFALVRLGFHYFRQMVL-EMMAPNCITLNGL 184
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + +V C+ +H + K GF++ + V + L+D+YAK G + A F++ S
Sbjct: 185 LRASIELNDVGICRQLHCFILKSGFDS-NCFVGSALVDSYAKFGLVDEAQSAFDEVS--S 241
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP---------NRSWRIGEEGL-KFF 252
++LV W ++S +A++G+ +A F+ M+ G+K N +G GL K
Sbjct: 242 RDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQV 301
Query: 253 DKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++ D+ L+D+ + +E A + G+ + N+V W T
Sbjct: 302 HGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGMI--VKNIVSWTT 350
>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
Length = 640
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/350 (29%), Positives = 170/350 (48%), Gaps = 56/350 (16%)
Query: 3 VYKQLQQIYIHSHSPLPPLF------------DSFTYSFLIRTCVTLSYPNLGTQLHAVF 50
++ + + YI S+S L D++TY +++ C G ++H
Sbjct: 96 MWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHV 155
Query: 51 SKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK-------- 102
KVGF S VYV L +MY G ++D+ KLFDE P + V+WN I+ G VK
Sbjct: 156 LKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDMGQVM 215
Query: 103 ----------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI 146
W+ +I GY + EAL +F M A E+ +++VL A
Sbjct: 216 EAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNA-NGMRLDEVVVVSVLSAC 274
Query: 147 WKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI----DTYAKCGCIFSASKLFEDTSVDR 202
V+ ++IHG + G ++ +++ N LI D Y KCGC+ +A ++F ++
Sbjct: 275 AHLSIVKTGKMIHGLVIRMGIESY-VNLQNALIHMYSDMYMKCGCVENALEVF--NGMEE 331
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKF 251
K + SW +I G A++G+ + +++ F M+ G+ PN R + +EG
Sbjct: 332 KGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITFMGVLGACRHMGLVDEGRCH 391
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F M+E+ + P++KHYGC++D+L RAG L +AE++ +P +V W
Sbjct: 392 FASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMP-MAPDVATW 440
>gi|125562063|gb|EAZ07511.1| hypothetical protein OsI_29767 [Oryza sativa Indica Group]
Length = 567
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 139/255 (54%), Gaps = 39/255 (15%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYS 111
G L + K+FDE+P RNLV+WN ++ G +V WT +I GY+
Sbjct: 240 GLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYA 299
Query: 112 RMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF---N 168
+ R + L LFR M +P+E+T+++VL A + + +H + +K N
Sbjct: 300 QAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNN 359
Query: 169 AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENF 228
+++ + LID YAKCG A K+F S+DRKN+ +W +I+ AM+G +++V+ F
Sbjct: 360 EYNLGAA--LIDMYAKCGRTDIAVKIF--NSLDRKNVSAWNALITRLAMNGNAQDSVDAF 415
Query: 229 ERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILER 277
E+M++ G KPN +G +EG + F M C V P++KHYGC++D+L R
Sbjct: 416 EQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGR 475
Query: 278 AGRLEQAEEVASGIP 292
AG LE+AEE+ +P
Sbjct: 476 AGLLEEAEELIRSMP 490
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 117/292 (40%), Gaps = 68/292 (23%)
Query: 23 DSFTYSFLIRTCVTL-SYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D FT L+ + L ++P G Q+HA + GF + V+V AL MY G L+D++ +
Sbjct: 93 DRFTLPPLLGSAGKLPAFPRTGAQVHAQAVRRGFLADVFVVNALLAMY---GALRDAASM 149
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
R + + +V W +I GY + A +F M
Sbjct: 150 ------REVFGSCAGVADVVSWNTVIGGYVKCGEMESAKRVFDEMPR------------- 190
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS-NCLIDTYAKCGCIFSASKLFEDTSV 200
+NG VS + ++ YA G + A ++F+
Sbjct: 191 ------RNG-----------------------VSWSTMVGGYAAAGELDVAREMFDRMPA 221
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKF---FDKMVE 257
+N+V+W ++++GFA HG+ A + F+ M L SW G D E
Sbjct: 222 IGRNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLV---SWNAMLRGYSVNSDMDGARE 278
Query: 258 ECEVLP--DIKHYGCLIDILERAGRLEQAEEVASGI-------PSQITNVVV 300
+V+P D+ + C+I +AGR + E+ + P+++T V V
Sbjct: 279 LFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQTESNVQPNEVTMVSV 330
>gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 152/272 (55%), Gaps = 26/272 (9%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G QLH K+G ++YV L +MY + G + S ++FD++ E +V +N II L
Sbjct: 131 GKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSL-- 188
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
+R NR+NEALALFR + +P+++T+L VL + G + + +H Y
Sbjct: 189 --------ARNNRANEALALFRELQEIGL-KPTDVTMLVVLSSCALLGSLDLGRWMHEYV 239
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
+K GF+ + + V+ LID YAKCG + A +F D + +++ +W+ II +A HG G
Sbjct: 240 KKYGFDRY-VKVNTTLIDMYAKCGSLDDAVNVFRD--MPKRDTQAWSAIIVAYATHGDGF 296
Query: 223 EAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCL 271
+A+ M+K ++P+ +G EEG ++F M E ++P IKHYGC+
Sbjct: 297 QAISMLNEMKKEKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCM 356
Query: 272 IDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+D+L RAGRL++A + +P + T ++WRT
Sbjct: 357 VDLLGRAGRLDEAYKFIDELPIKPTP-ILWRT 387
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 106/228 (46%), Gaps = 25/228 (10%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
++++LQ+I L P T ++ +C L +LG +H K GF +V VN
Sbjct: 200 LFRELQEI------GLKPT--DVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVN 251
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
T L DMY G L D+ +F ++P+R+ W+ II V + DG+ +A+++
Sbjct: 252 TTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAII---VAYATHGDGF-------QAISM 301
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNC-QLIHGYGEKRGFNAFDIHVSNCLIDT 181
M E +P EIT L +L A NG V + HG + G H C++D
Sbjct: 302 LNEMKK-EKVQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYG-CMVDL 359
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVE 226
+ G + A K ++ + + + W T++S + HG MGK +E
Sbjct: 360 LGRAGRLDEAYKFIDELPI-KPTPILWRTLLSACSTHGNVEMGKRVIE 406
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 121/302 (40%), Gaps = 69/302 (22%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS---LG 73
PLP L LI C TL Q+ A K +Q++ V T + S
Sbjct: 25 PLPHLIS------LIPKCTTLKELK---QIQAYTIKTNYQNNTNVITKFINFCTSNPTKA 75
Query: 74 FLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE 133
++ + +LFD++ + N+V +N + GY+R+N + FRR
Sbjct: 76 SMEHAHQLFDQITQPNIVLFNTMAR----------GYARLNDPLRMITHFRR-------- 117
Query: 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASK 193
L + K + + +H + K G + +++V LI+ Y CG I ++ +
Sbjct: 118 --------CLRLVSKVKALAEGKQLHCFAVKLGVSD-NMYVVPTLINMYTACGDIDASRR 168
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFD 253
+F+ +D +V++ II A + EA+ F +Q++GLKP +
Sbjct: 169 VFD--KIDEPCVVAYNAIIMSLARNNRANEALALFRELQEIGLKPTDVTML--------- 217
Query: 254 KMVEECEVLPD----------IKHYG---------CLIDILERAGRLEQAEEVASGIPSQ 294
++ C +L +K YG LID+ + G L+ A V +P +
Sbjct: 218 VVLSSCALLGSLDLGRWMHEYVKKYGFDRYVKVNTTLIDMYAKCGSLDDAVNVFRDMPKR 277
Query: 295 IT 296
T
Sbjct: 278 DT 279
>gi|296084034|emb|CBI24422.3| unnamed protein product [Vitis vinifera]
Length = 502
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/302 (34%), Positives = 159/302 (52%), Gaps = 33/302 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNL--GTQLHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSS 79
+ T+ L+ C L G +HA K+G + +V V TAL DMY G L +
Sbjct: 88 NHITFLTLLSACTDFPLEGLRFGGSIHAYVRKLGLDTENVMVGTALVDMYSKCGQLDLAW 147
Query: 80 KLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNE 118
+FDE+ RN V+WN +I G ++ WT +I G+ + +
Sbjct: 148 LMFDEMHVRNSVSWNTMIDGCMRNGEVGEAIVLFDQMSERDAISWTSMIGGFVKKGCFEQ 207
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
AL FR M EP +TI++VL A G + I+ + K+ F +I +SN L
Sbjct: 208 ALEWFREMQLAG-VEPDYVTIISVLAACANLGALGLGLWINRFVMKQDFKD-NIKISNSL 265
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
ID Y++CGCI A ++FE + +++LVSW ++I GFA++G +EA+E F M+K G
Sbjct: 266 IDMYSRCGCIRLARQVFE--QMPKRSLVSWNSMIVGFALNGHAEEALEFFNLMRKEGHSG 323
Query: 239 NRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNV 298
+ +EGL+FFD M ++ P I+HYGCL+D+ RAGRLE A V + +P + V
Sbjct: 324 -----LVDEGLQFFDIMKRTRKISPRIEHYGCLVDLYSRAGRLEDALNVIANMPMKPNEV 378
Query: 299 VV 300
V+
Sbjct: 379 VL 380
>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 599
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 150/284 (52%), Gaps = 28/284 (9%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSK-VGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPER 88
LI C+ LG +H K + + V + AL ++YV G+L + KLFDE+PE+
Sbjct: 213 LIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEIPEK 272
Query: 89 NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148
N V WN +I G Y ++ NE + L R M +P T+ VL A +
Sbjct: 273 NTVVWNSLICG----------YCQIGSLNEVIELLREMHLSN-LKPDRFTVSGVLSACAQ 321
Query: 149 NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSW 208
G +H + EK+G +D+ + LID YAKCG I +A K+F+ ++ +N+ +W
Sbjct: 322 MGAFNLGNWVHRFAEKKGI--WDVFIGTALIDMYAKCGFIGAARKVFDQ--MNERNVATW 377
Query: 209 TTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVE 257
I+SG+A HG + A+E F M++ G +P+ + E G ++FD M++
Sbjct: 378 NAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGKQYFDLMLQ 437
Query: 258 ECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
++ P ++HYGC++D+L RAG L++A E+ + + NVVVW
Sbjct: 438 YYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVE-PNVVVW 480
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/220 (26%), Positives = 112/220 (50%), Gaps = 12/220 (5%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D +TY F+ + C + G ++H V ++G++ ++ ++L + Y+ G + ++ +
Sbjct: 102 LGDKYTYPFVFKACASQFAVEKGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQ 161
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FDE +++V WN +IT GY+R ++ +F+ M + P+E T++
Sbjct: 162 VFDEFDAKDVVFWNALIT----------GYARQGMVLDSFGVFKEMVEVKEVRPNEGTMM 211
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
++ A ++ ++ + IHGY K + + LI+ Y KCG + A KLF++ +
Sbjct: 212 GLIVACIESKNLKLGRAIHGYMMKDMVLREGVKLEAALINLYVKCGYLDGARKLFDE--I 269
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
KN V W ++I G+ G E +E M LKP+R
Sbjct: 270 PEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDR 309
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 98/215 (45%), Gaps = 37/215 (17%)
Query: 16 SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL 75
S L P D FT S ++ C + NLG +H K G V++ TAL DMY GF+
Sbjct: 303 SNLKP--DRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIWD-VFIGTALIDMYAKCGFI 359
Query: 76 KDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS 135
+ K+FD++ ERN+ TWN I++ GY+ ++ A+ LF M P
Sbjct: 360 GAARKVFDQMNERNVATWNAILS----------GYASHGQAESAIELFSEMRE-SGARPD 408
Query: 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS-----------NCLIDTYAK 184
IT LAVL A +G V N G FD+ + C++D +
Sbjct: 409 SITFLAVLHACAHSGLVEN-----------GKQYFDLMLQYYKIPPRVEHYGCMVDLLGR 457
Query: 185 CGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
G + A +L + V+ N+V W ++S ++HG
Sbjct: 458 AGLLQEARELIKMMVVE-PNVVVWGALLSACSIHG 491
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/288 (22%), Positives = 131/288 (45%), Gaps = 34/288 (11%)
Query: 30 LIRTCVTLSYPNLGTQLHA--VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE 87
LI TC + Q+HA + S + + ++ T + + ++S L ++++F++ E
Sbjct: 12 LIETCTNIQQLK---QIHAKSIISSLSYTQ--FIITKIINSFLSHACLDYATQVFNQTQE 66
Query: 88 RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIW 147
+ +N +I YS A++++ +M AC+ + T V A
Sbjct: 67 PDGFIYNAMIRA----------YSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACA 116
Query: 148 KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
V + +HG + G+ D + + L++ Y CG I +A ++F++ D K++V
Sbjct: 117 SQFAVEKGKEVHGVIVRIGYE-LDGFLQSSLLNFYMVCGEIGNAQQVFDE--FDAKDVVF 173
Query: 208 WTTIISGFAMHGMGKEAVENFERMQKVG-LKPNRSWRIG-----------EEGLKFFDKM 255
W +I+G+A GM ++ F+ M +V ++PN +G + G M
Sbjct: 174 WNALITGYARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYM 233
Query: 256 VEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+++ + +K LI++ + G L+ A ++ IP + N VVW +
Sbjct: 234 MKDMVLREGVKLEAALINLYVKCGYLDGARKLFDEIPEK--NTVVWNS 279
>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
Length = 693
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 152/293 (51%), Gaps = 26/293 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD T ++ C + LG + + G + + TAL DMY G L + +L
Sbjct: 218 FDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRL 277
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + R++V W+ +I+G Y++ ++ EALALF M E EP+++T+++
Sbjct: 278 FDGMQSRDVVAWSAMISG----------YTQADQCREALALFSEMQLAE-VEPNDVTMVS 326
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL A G + + +H Y ++ + I + L+D YAKCGCI A + FE V
Sbjct: 327 VLSACAVLGALETGKWVHSYIRRKRLS-LTIILGTALVDFYAKCGCIDDAVEAFESMPV- 384
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
KN +WT +I G A +G G+EA+E F M+K ++P IG EEG +
Sbjct: 385 -KNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRR 443
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
FD M ++ + P +HYGC++D+L RAG +++A + +P + N V+WR
Sbjct: 444 HFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIE-PNAVIWRA 495
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 108/220 (49%), Gaps = 20/220 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + +++C + ++G + A K G + +V ++L MY S + + LF
Sbjct: 118 DQHTVACALKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLF 177
Query: 83 DELPERNLVTWNVIITGLVK---WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
D + E +V WN IIT +K W +++ + M A EIT+
Sbjct: 178 DAVEENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAF--------------DEITL 223
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
++V+ A + G+ + + + Y +++G + ++ LID YAKCG + A +LF+
Sbjct: 224 VSVVTACGRIGDAKLGKWVAEYVDEKGL-VRNRNLMTALIDMYAKCGELGKARRLFD--G 280
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+ +++V+W+ +ISG+ +EA+ F MQ ++PN
Sbjct: 281 MQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPN 320
>gi|125525262|gb|EAY73376.1| hypothetical protein OsI_01257 [Oryza sativa Indica Group]
Length = 499
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 156/290 (53%), Gaps = 38/290 (13%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE-RNLVTWNVIITGLVK- 102
QLH++ + G + + + +L Y S G + + ++FDE ++V+WNV+I G VK
Sbjct: 92 QLHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAAYADVVSWNVMIDGYVKS 151
Query: 103 --------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
WT +I Y++M + EA+ +FRRM E EP + +L+V
Sbjct: 152 GDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQV-EGIEPDGVALLSV 210
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G V + +H + +RG +I + N +ID Y KCG + A ++FE +++
Sbjct: 211 LSACGDLGVVDLGEWVHRFVLRRGL-CQEIPLMNAIIDMYVKCGSVKKALEVFE--GMEQ 267
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKF 251
K++V+WTT+I+GFA+HG+G EAVE F RM+K + PN + + G +
Sbjct: 268 KSIVTWTTMIAGFALHGLGSEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWY 327
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F MV + ++ P ++HYGC+ID+L RAG L +A + +P + N +W
Sbjct: 328 FKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFK-ANAAIW 376
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 100/227 (44%), Gaps = 30/227 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D ++ C L +LG +H + G + + A+ DMYV G +K + ++F
Sbjct: 203 DGVALLSVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVF 262
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + ++++VTW +I G++ +EA+ LFRRM E P++IT LAV
Sbjct: 263 EGMEQKSIVTWTTMIA----------GFALHGLGSEAVELFRRMEK-ENVSPNDITFLAV 311
Query: 143 LPAIWKNGEVRNCQ-----LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
L G + ++ Y K + C+ID + GC+ A L +D
Sbjct: 312 LSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHY-----GCMIDLLGRAGCLMEARGLIQD 366
Query: 198 TSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKPNRS 241
+ N W +++ HG +G++A+ + + L+P+ S
Sbjct: 367 MPF-KANAAIWGALLAAARTHGDTELGEQAL-----LHLIELEPHNS 407
>gi|115456858|ref|NP_001052029.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|38345581|emb|CAE01779.2| OSJNBa0027H06.17 [Oryza sativa Japonica Group]
gi|113563600|dbj|BAF13943.1| Os04g0110500 [Oryza sativa Japonica Group]
gi|125589117|gb|EAZ29467.1| hypothetical protein OsJ_13541 [Oryza sativa Japonica Group]
gi|215736988|dbj|BAG95917.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 531
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 150/296 (50%), Gaps = 39/296 (13%)
Query: 41 NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVII--- 97
N G ++HA+ G + V+V+T L +Y G L S ++FD++P R+ +TWN ++
Sbjct: 133 NPGKKIHALIVTSGIEPDVFVSTELIRVYGECGKLAVSRRVFDDMPSRSTITWNAMLHQY 192
Query: 98 ------------------TGLVKWTGIIDGYSRMNRSNEALALFRRM---AACEYTEPSE 136
+V W ++ GY R EAL LFR+M ++C P+
Sbjct: 193 ARHGKVDTAYELFLAMPRRDVVSWNTVMAGYCVAGRCREALGLFRQMVSPSSCA-VHPNV 251
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
T+ +L A G + +H Y E+ N D ++ CLID Y KCG I +A ++FE
Sbjct: 252 PTMSTILGACAGAGCLETGIWVHAYIERNRMND-DGYLDRCLIDMYCKCGSIDNALQVFE 310
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG----------- 245
+++L SWTT+I G AMHG +A+ F+ MQ G+ P+ +G
Sbjct: 311 KAP-RKRDLFSWTTVICGLAMHGRATDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLV 369
Query: 246 EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+EGL +F M + + P I+HYGC+ID+L R GRL++A + +P N V+W
Sbjct: 370 DEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMD-PNTVIW 424
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 125/298 (41%), Gaps = 33/298 (11%)
Query: 44 TQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
+ +H + K G ++ TAL Y +LG + +LFDE+PE+ GLV
Sbjct: 30 SSIHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQ----------GLVP 79
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGE---VRN-CQLI 158
T + + ++ +A+A+F M A + P + + L A G RN + I
Sbjct: 80 RTAMARAHVASGQAAQAIAVFGDMVA-DGVFPDNVALAVALGACHGAGSWTARRNPGKKI 138
Query: 159 HGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218
H G D+ VS LI Y +CG + + ++F+D + ++ ++W ++ +A H
Sbjct: 139 HALIVTSGIEP-DVFVSTELIRVYGECGKLAVSRRVFDD--MPSRSTITWNAMLHQYARH 195
Query: 219 GMGKEAVENFERMQKVGLKPNRSWRIG-------EEGLKFFDKMV--EECEVLPDIKHYG 269
G A E F M + + + G E L F +MV C V P++
Sbjct: 196 GKVDTAYELFLAMPRRDVVSWNTVMAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMS 255
Query: 270 CLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFL-RLLINSYFFSPITLNSQRLF 326
++ AG LE V + I N G+L R LI+ Y N+ ++F
Sbjct: 256 TILGACAGAGCLETGIWVHAYIERNRMN----DDGYLDRCLIDMYCKCGSIDNALQVF 309
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 92/222 (41%), Gaps = 23/222 (10%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T S ++ C G +HA + Y++ L DMY G + ++ ++F++
Sbjct: 253 TMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKA 312
Query: 86 P-ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
P +R+L +W +I GL + R+ +AL +F M P ++T++ VL
Sbjct: 313 PRKRDLFSWTTVICGL----------AMHGRATDALRMFDMMQD-NGICPDDVTLVGVLN 361
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFN-AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
A G V L + Y + F I C+ID + G + A + +D
Sbjct: 362 ACAHGGLVDE-GLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMD-P 419
Query: 204 NLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKPNRSW 242
N V W +S +HG +GK A E R L P+ W
Sbjct: 420 NTVIWGAFLSACKVHGNMELGKIAAEELTR-----LDPDDPW 456
>gi|326522825|dbj|BAJ88458.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 551
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 155/293 (52%), Gaps = 28/293 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++T+ L++ C G Q H V K G H YV L +MY G + + +F
Sbjct: 122 DTYTFVSLLKACAAARAGEEGRQAHGVAVKTGAADHEYVLPTLINMYAECGDARSARAMF 181
Query: 83 DELPERN-LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
+P + +V++N +IT V R +R EAL LFR M A + +P+ +T+ +
Sbjct: 182 GRVPNGDCVVSYNAMITAAV----------RSSRPGEALVLFREMQA-KGLKPTSVTVTS 230
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL A G + + IH Y K G ++ + V+ LID Y KCG + A +F+ ++
Sbjct: 231 VLSACALLGALELGRWIHEYVRKAGLDSL-VKVNTALIDMYGKCGSLEDAIDVFQ--GME 287
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
++ +W+ +I +A H G+EA+ FE M+K G++P+ +G EGL+
Sbjct: 288 SRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIRPDAVTFLGVLYACSHSGMVSEGLQ 347
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+FD M E ++P IKHYGC+ D+L R+G+LE+A + +P Q T ++WRT
Sbjct: 348 YFDSM-REYGIVPGIKHYGCVTDLLARSGQLEKAYKFIDELPIQPT-AILWRT 398
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 89/212 (41%), Gaps = 21/212 (9%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
S T + ++ C L LG +H K G S V VNTAL DMY G L+D+ +F
Sbjct: 225 SVTVTSVLSACALLGALELGRWIHEYVRKAGLDSLVKVNTALIDMYGKCGSLEDAIDVFQ 284
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
+ R+ W+V+I Y+ + EA++LF M + P +T L VL
Sbjct: 285 GMESRDRQAWSVMIV----------AYANHSYGREAISLFEEMKK-QGIRPDAVTFLGVL 333
Query: 144 PAIWKNGEVRNC----QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
A +G V + YG G + C+ D A+ G + A K ++
Sbjct: 334 YACSHSGMVSEGLQYFDSMREYGIVPGIKHY-----GCVTDLLARSGQLEKAYKFIDELP 388
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
+ + + W T++S HG FER+
Sbjct: 389 I-QPTAILWRTLLSACGSHGAVDLGKRVFERI 419
>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 646
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 169/327 (51%), Gaps = 51/327 (15%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT+ +++ C G Q+H + K GF +V + L MYV GF+KD+ LF
Sbjct: 127 NRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLF 186
Query: 83 -DELPERNLVT-------------WNVIITG---------------------LVKWTGII 107
+ E+++V WNV+I G +V W +I
Sbjct: 187 YKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMI 246
Query: 108 DGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF 167
GYS +A+ +FR M + P+ +T+++VLPAI + G + + +H Y E G
Sbjct: 247 SGYSLNGFFKDAVEVFREMKKGD-IRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGI 305
Query: 168 NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVEN 227
D+ + + LID Y+KCG I A +FE + R+N+++W+ +I+GFA+HG +A++
Sbjct: 306 RIDDV-LGSALIDMYSKCGIIEKAIHVFE--RLPRENVITWSAMINGFAIHGQAGDAIDC 362
Query: 228 FERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILE 276
F +M++ G++P+ I EEG ++F +MV + P I+HYGC++D+L
Sbjct: 363 FCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLG 422
Query: 277 RAGRLEQAEEVASGIPSQITNVVVWRT 303
R+G L++AEE +P + + V+W+
Sbjct: 423 RSGLLDEAEEFILNMPIKPDD-VIWKA 448
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 139/317 (43%), Gaps = 72/317 (22%)
Query: 44 TQLHAVFSKVG------FQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVII 97
+Q+HAVF K G + + A D++ L + K+F+++P+RN +WN II
Sbjct: 40 SQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHR--DLDYAHKIFNQMPQRNCFSWNTII 97
Query: 98 TGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQL 157
G + S +++ A+ LF M + E+ EP+ T +VL A K G+++ +
Sbjct: 98 RGFSE--------SDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQ 149
Query: 158 IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR--------------- 202
IHG K GF + +SN L+ Y CG + A LF +++
Sbjct: 150 IHGLALKYGFGGDEFVMSN-LVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEI 208
Query: 203 ----------------------------KNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
+++VSW T+ISG++++G K+AVE F M+K
Sbjct: 209 VLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKG 268
Query: 235 GLKPNRSW---------RIGEEGL-KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
++PN R+G L ++ E+ + D LID+ + G +E+A
Sbjct: 269 DIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKA 328
Query: 285 EEVASGIPSQITNVVVW 301
V +P + NV+ W
Sbjct: 329 IHVFERLPRE--NVITW 343
>gi|356533546|ref|XP_003535324.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09190-like [Glycine max]
Length = 483
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/333 (30%), Positives = 162/333 (48%), Gaps = 51/333 (15%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRT----------------CVTLSYPNLGTQLHAVFSKVGF 55
I +HS PP SF++ L++T L Y LG +HA ++GF
Sbjct: 78 IKAHSLHPPFHASFSFFSLMKTRAISPDEYTLAPLFKSASNLRYYVLGGCVHAHVVRLGF 137
Query: 56 QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG---------------- 99
H V A ++Y S + D+SK+FDE+ + ++V WN++I G
Sbjct: 138 TRHASVRVAALEVYASCERMGDASKVFDEMRDPDVVVWNLMIRGFCKMGDLETGMKVFGQ 197
Query: 100 -----LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRN 154
+V W ++ ++ N+ +AL LF M + EP + +++ VLP + G V
Sbjct: 198 MKERTVVSWNLMMSCLAKNNKEEKALELFNEMLEQGF-EPDDASLVTVLPVCARLGAVDI 256
Query: 155 CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISG 214
+ IH Y +GF I+V N L+D Y KCG + +A +F D + KN+VSW +ISG
Sbjct: 257 GEWIHSYANSKGFLQDTINVGNSLVDFYCKCGNLQAAWSIFNDMA--SKNVVSWNAMISG 314
Query: 215 FAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLP 263
A +G G+ V FE M G +PN S +G + G F M + +V P
Sbjct: 315 LAYNGEGEVGVNLFEEMVHGGFEPNDSTFVGVLACCAHVGLVDRGRDLFASMSVKFKVSP 374
Query: 264 DIKHYGCLIDILERAGRLEQAEEVASGIPSQIT 296
++HYGC++D+L R G + +A ++ + +P + T
Sbjct: 375 KLEHYGCVVDLLGRCGHVREARDLITSMPLKPT 407
>gi|356561772|ref|XP_003549152.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Glycine max]
Length = 522
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 104/318 (32%), Positives = 161/318 (50%), Gaps = 43/318 (13%)
Query: 19 PPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL-GFLKD 77
PP + F + ++TC LHA K GF + V TAL D Y + G L +
Sbjct: 102 PPRPNHFIFPHALKTCPESC---AAESLHAQIVKSGFHEYPVVQTALVDSYSKVSGGLGN 158
Query: 78 SSKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRS 116
+ K+FDE+ +R++V++ +++G + W +I G ++
Sbjct: 159 AKKVFDEMSDRSVVSFTAMVSGFARVGDVESAVRVFGEMLDRDVPSWNALIAGCTQNGAF 218
Query: 117 NEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN 176
+ + LFRRM E P+ +T++ L A G ++ + IHGY K G AFD V N
Sbjct: 219 TQGIELFRRMVF-ECNRPNGVTVVCALSACGHMGMLQLGRWIHGYVYKNGL-AFDSFVLN 276
Query: 177 CLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG- 235
L+D Y KCG + A K+FE K L SW ++I+ FA+HG A+ FE+M + G
Sbjct: 277 ALVDMYGKCGSLGKARKVFEMNP--EKGLTSWNSMINCFALHGQSDSAIAIFEQMVEGGG 334
Query: 236 -LKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQ 283
++P+ +G E+G +F+ MV+E + P I+HYGCLID+L RAGR ++
Sbjct: 335 GVRPDEVTFVGLLNACTHGGLVEKGYWYFEMMVQEYGIEPQIEHYGCLIDLLGRAGRFDE 394
Query: 284 AEEVASGIPSQITNVVVW 301
A +V G+ S + VVW
Sbjct: 395 AMDVVKGM-SMEPDEVVW 411
>gi|15231592|ref|NP_189297.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75275188|sp|Q38959.1|PP257_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g26630, chloroplastic; Flags: Precursor
gi|1402883|emb|CAA66814.1| hypothetical protein [Arabidopsis thaliana]
gi|1495263|emb|CAA66119.1| orf09 [Arabidopsis thaliana]
gi|11994298|dbj|BAB01728.1| unnamed protein product [Arabidopsis thaliana]
gi|20466384|gb|AAM20509.1| unknown protein [Arabidopsis thaliana]
gi|23198064|gb|AAN15559.1| unknown protein [Arabidopsis thaliana]
gi|332643668|gb|AEE77189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 455
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 158/305 (51%), Gaps = 37/305 (12%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD FT+ F+I+ C+ S LGTQ+H + K GF + V+ L D+Y G K+
Sbjct: 117 FDKFTFPFVIKACLASSSIRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKV 176
Query: 82 FDELPERNLVTWNVIITGL---------------------VKWTGIIDGYSRMNRSNEAL 120
FD++P R++V+W ++ GL V WT +I Y + R +EA
Sbjct: 177 FDKMPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAF 236
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LFRRM + +P+E TI+ +L A + G + + +H Y K GF D + LID
Sbjct: 237 QLFRRMQV-DDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGF-VLDCFLGTALID 294
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENF-ERMQKVGLKPN 239
Y+KCG + A K+F+ + K+L +W ++I+ +HG G+EA+ F E ++ ++P+
Sbjct: 295 MYSKCGSLQDARKVFD--VMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPD 352
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
+G ++GL++F +M++ + P +H C+I +LE+A +E+A +
Sbjct: 353 AITFVGVLSACANTGNVKDGLRYFTRMIQVYGISPIREHNACMIQLLEQALEVEKASNLV 412
Query: 289 SGIPS 293
+ S
Sbjct: 413 ESMDS 417
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 123/305 (40%), Gaps = 53/305 (17%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
F S S+ +RTC S Q+H K + + L + S G + +S +
Sbjct: 18 FRSPEASYFLRTCSNFSQLK---QIHTKIIKHNLTNDQLLVRQLISVSSSFGETQYASLV 74
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F++L + TWN++I L S ++ EAL LF M ++ + T
Sbjct: 75 FNQLQSPSTFTWNLMIRSL----------SVNHKPREALLLFILMMISHQSQFDKFTFPF 124
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE----- 196
V+ A + +R +HG K GF D+ N L+D Y KCG S K+F+
Sbjct: 125 VIKACLASSSIRLGTQVHGLAIKAGFFN-DVFFQNTLMDLYFKCGKPDSGRKVFDKMPGR 183
Query: 197 --------------DTSVDR----------KNLVSWTTIISGFAMHGMGKEAVENFERMQ 232
++ +D +N+VSWT +I+ + + EA + F RMQ
Sbjct: 184 SIVSWTTMLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQ 243
Query: 233 KVGLKPNR---------SWRIGEEGL-KFFDKMVEECEVLPDIKHYGCLIDILERAGRLE 282
+KPN S ++G + ++ + + D LID+ + G L+
Sbjct: 244 VDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQ 303
Query: 283 QAEEV 287
A +V
Sbjct: 304 DARKV 308
>gi|42564994|ref|NP_188527.2| mitochondrial editing factor 20 [Arabidopsis thaliana]
gi|75273478|sp|Q9LJ69.1|PP243_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g18970
gi|9280314|dbj|BAB01693.1| unnamed protein product [Arabidopsis thaliana]
gi|134031924|gb|ABO45699.1| At3g18970 [Arabidopsis thaliana]
gi|332642654|gb|AEE76175.1| mitochondrial editing factor 20 [Arabidopsis thaliana]
Length = 472
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 146/266 (54%), Gaps = 23/266 (8%)
Query: 42 LGTQLHAVFSKVGF--QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG 99
+G +H + K+GF +S + + T L Y G L+ + K+FDE+PER VTWN +I G
Sbjct: 129 VGRIVHGMVKKLGFLYESEL-IGTTLLHFYAKNGDLRYARKVFDEMPERTSVTWNAMIGG 187
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAAC-EYTEPSEITILAVLPAIWKNGEVRNCQLI 158
+ +R +A+ LFRR + C P++ T++ VL AI + G + L+
Sbjct: 188 YCSHKDKGNHNAR-----KAMVLFRRFSCCGSGVRPTDTTMVCVLSAISQTGLLEIGSLV 242
Query: 159 HGYGEKRGFNA-FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAM 217
HGY EK GF D+ + L+D Y+KCGC+ +A +FE V KN+ +WT++ +G A+
Sbjct: 243 HGYIEKLGFTPEVDVFIGTALVDMYSKCGCLNNAFSVFELMKV--KNVFTWTSMATGLAL 300
Query: 218 HGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKFFDKMVEECEVLPDIK 266
+G G E RM + G+KPN R + EEG++ F M V P I+
Sbjct: 301 NGRGNETPNLLNRMAESGIKPNEITFTSLLSAYRHIGLVEEGIELFKSMKTRFGVTPVIE 360
Query: 267 HYGCLIDILERAGRLEQAEEVASGIP 292
HYGC++D+L +AGR+++A + +P
Sbjct: 361 HYGCIVDLLGKAGRIQEAYQFILAMP 386
>gi|356522600|ref|XP_003529934.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
mitochondrial-like [Glycine max]
Length = 644
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/283 (33%), Positives = 142/283 (50%), Gaps = 25/283 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+S L+ C +L Y + G Q+H ++ F S V V +AL +MY + D+ +LF
Sbjct: 258 DEFTFSNLLSICDSLEYYDFGKQVHGHILRLSFDSDVLVASALINMYAKNENIVDAHRLF 317
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + RN+V WN II GY NE + L R M E P E+TI +
Sbjct: 318 DNMVIRNVVAWNTIIV----------GYGNRREGNEVMKLLREMLR-EGFSPDELTISST 366
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ + H + K F F + V+N LI Y+KCG I SA K F T
Sbjct: 367 ISLCGYVSAITETMQAHAFAVKSSFQEF-LSVANSLISAYSKCGSITSACKCFRLTR--E 423
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+LVSWT++I+ +A HG+ KEA E FE+M G+ P++ +G +GL +
Sbjct: 424 PDLVSWTSLINAYAFHGLAKEATEVFEKMLSCGIIPDQISFLGVLSACSHCGLVTKGLHY 483
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
F+ M +++PD HY CL+D+L R G + +A E +P +
Sbjct: 484 FNLMTSVYKIVPDSGHYTCLVDLLGRYGLINEAFEFLRSMPME 526
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 7/190 (3%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G QLHA K GF + + + +Y+ D+ KLF+EL RN+V+WN++I G+V
Sbjct: 69 GKQLHAHLIKFGFCHVLSLQNQILGVYLKCTEADDAEKLFEELSVRNVVSWNILIRGIV- 127
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
G D + + + F+RM E P T + K ++ +H +
Sbjct: 128 --GCGDANENDSNQQQCFSYFKRMLL-ELVVPDSTTFNGLFGVCVKFHDIDMGFQLHCFA 184
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
K G + D V + L+D YA+CG + +A ++F V ++LV W +IS +A++ + +
Sbjct: 185 VKLGLD-LDCFVGSVLVDLYAQCGLVENARRVF--LVVQHRDLVVWNVMISCYALNCLPE 241
Query: 223 EAVENFERMQ 232
EA F M+
Sbjct: 242 EAFVMFNLMR 251
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 108/219 (49%), Gaps = 16/219 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DS T++ L CV ++G QLH K+G +V + L D+Y G ++++ ++F
Sbjct: 157 DSTTFNGLFGVCVKFHDIDMGFQLHCFAVKLGLDLDCFVGSVLVDLYAQCGLVENARRVF 216
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ R+LV WNV+I+ Y+ EA +F M + E T +
Sbjct: 217 LVVQHRDLVVWNVMIS----------CYALNCLPEEAFVMFNLMRW-DGANGDEFTFSNL 265
Query: 143 LPAIWKNGEVRN-CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L +I + E + + +HG+ + F++ D+ V++ LI+ YAK I A +LF++ +
Sbjct: 266 L-SICDSLEYYDFGKQVHGHILRLSFDS-DVLVASALINMYAKNENIVDAHRLFDNMVI- 322
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+N+V+W TII G+ G E ++ M + G P+
Sbjct: 323 -RNVVAWNTIIVGYGNRREGNEVMKLLREMLREGFSPDE 360
>gi|347954496|gb|AEP33748.1| chloroplast biogenesis 19, partial [Capsella bursa-pastoris]
Length = 489
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/313 (32%), Positives = 159/313 (50%), Gaps = 39/313 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPN--LGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSS 79
+ T+ L+ C S + LG LH K+G ++HV V TA+ MY +K +
Sbjct: 59 NHITFIALLSGCGDFSSGSEALGDLLHGYACKLGHDRTHVMVGTAILGMYSKHSRVKKAR 118
Query: 80 KLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNE 118
+FD + ++N VTWN +I G L+ WT +I+G+ + E
Sbjct: 119 LVFDYMEDKNSVTWNTMIDGYMRNGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEE 178
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
ALA FR M +P + I+A L A G + +H Y + F ++ VSN L
Sbjct: 179 ALAWFREMQ-ISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVMSQDFKN-NVKVSNSL 236
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
ID Y +CGC+ A ++F+ ++++ +VSW ++I GFA +G E++ F +MQ+ G KP
Sbjct: 237 IDLYCRCGCVEFAREVFD--KMEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKP 294
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ G EEGL++F M + + P I+HYGCL+D+ RAGRLE+A +V
Sbjct: 295 DAVTFTGALTACSHVGLVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEEALKV 354
Query: 288 ASGIPSQITNVVV 300
+P + VV+
Sbjct: 355 VQSMPMKPNEVVI 367
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 86/189 (45%), Gaps = 12/189 (6%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
+ C L + G +H F+++V V+ +L D+Y G ++ + ++FD++ +R +
Sbjct: 202 LNACTNLGALSFGLWVHRYVMSQDFKNNVKVSNSLIDLYCRCGCVEFAREVFDKMEKRTV 261
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
V+WN +I G++ ++E+L FR+M E +P +T L A G
Sbjct: 262 VSWNSVIV----------GFAANGNAHESLVYFRKMQE-EGFKPDAVTFTGALTACSHVG 310
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
V ++ + I CL+D Y++ G + A K+ + + + N V +
Sbjct: 311 LVEEGLRYFQTMKRDHRISPRIEHYGCLVDLYSRAGRLEEALKVVQSMPM-KPNEVVIGS 369
Query: 211 IISGFAMHG 219
+++ HG
Sbjct: 370 LLAACRTHG 378
>gi|56783979|dbj|BAD81434.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
sativa Japonica Group]
Length = 503
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 156/290 (53%), Gaps = 38/290 (13%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE-LPERNLVTWNVIITGLVK- 102
QLH++ + G + + + +L Y S G + + ++FDE ++V+WNV+I G VK
Sbjct: 96 QLHSLLVRAGHAADPHASASLVQAYCSCGSVASARRVFDETAASADVVSWNVMIDGYVKS 155
Query: 103 --------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
WT +I Y++M + EA+ +FRRM E EP + +L+V
Sbjct: 156 GDLARARELFDVMPGRNVVSWTMVIGAYAQMKQPEEAIEVFRRMQV-EGIEPDGVALLSV 214
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G V + +H + +RG +I + N +ID Y KCG + A ++FE +++
Sbjct: 215 LSACGDLGVVDLGEWVHRFVLRRGL-CQEIPLMNAIIDMYVKCGSVKKALEVFE--GMEQ 271
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKF 251
K++V+WTT+I+GFA+HG+G EAVE F RM+K + PN + + G +
Sbjct: 272 KSIVTWTTMIAGFALHGLGLEAVELFRRMEKENVSPNDITFLAVLSVCSHVGLTDLGRWY 331
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F MV + ++ P ++HYGC+ID+L RAG L +A + +P + N +W
Sbjct: 332 FKTMVSQYKIKPRVEHYGCMIDLLGRAGCLMEARGLIQDMPFK-ANAAIW 380
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 99/227 (43%), Gaps = 30/227 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D ++ C L +LG +H + G + + A+ DMYV G +K + ++F
Sbjct: 207 DGVALLSVLSACGDLGVVDLGEWVHRFVLRRGLCQEIPLMNAIIDMYVKCGSVKKALEVF 266
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + ++++VTW +I G++ EA+ LFRRM E P++IT LAV
Sbjct: 267 EGMEQKSIVTWTTMIA----------GFALHGLGLEAVELFRRMEK-ENVSPNDITFLAV 315
Query: 143 LPAIWKNGEVRNCQ-----LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
L G + ++ Y K + C+ID + GC+ A L +D
Sbjct: 316 LSVCSHVGLTDLGRWYFKTMVSQYKIKPRVEHY-----GCMIDLLGRAGCLMEARGLIQD 370
Query: 198 TSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKPNRS 241
+ N W +++ HG +G++A+ + + L+P+ S
Sbjct: 371 MPF-KANAAIWGALLAAARTHGDTELGEQAL-----LHLIELEPHNS 411
>gi|297848206|ref|XP_002891984.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297337826|gb|EFH68243.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 611
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/300 (31%), Positives = 165/300 (55%), Gaps = 32/300 (10%)
Query: 5 KQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTA 64
K +Q+ + + P + + +R ++ G Q+HA K GFQS++ V +
Sbjct: 199 KMYKQMLLENADVTP-----YCITIAVRASASIDSVTTGKQIHASVVKRGFQSNLPVMNS 253
Query: 65 LGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFR 124
+ D Y G+L ++ + F E+ +++L+TWN +I+ L + + S+EAL +F+
Sbjct: 254 ILDFYCRCGYLSEAKRYFHEMEDKDLITWNTLISELER-----------SDSSEALLMFQ 302
Query: 125 RMAACEYTEPSEITILAVLPAIWKNGEVRNC-QLIHGYGEKRGFNAFDIHVSNCLIDTYA 183
R + + P+ T +++ A N NC Q +HG +RGFN ++ ++N LID YA
Sbjct: 303 RFESQGFV-PNCYTFTSLVAAC-ANIAALNCGQQLHGRIYRRGFNK-NVELANALIDMYA 359
Query: 184 KCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN---- 239
KCG I + ++F + +R+NLVSWT+++ G+ HG G EAVE F++M G++P+
Sbjct: 360 KCGDIPDSERVFGEIE-ERRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVF 418
Query: 240 -------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
R + E+GLK+F+ M E + PD Y C++D+L RAG++ +A E+ +P
Sbjct: 419 MAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMP 478
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 117/237 (49%), Gaps = 27/237 (11%)
Query: 7 LQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALG 66
+++ SP + FT S ++++C + G +H V K+G + +YV+ AL
Sbjct: 99 FHEMFKQGRSP-----NEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNALM 153
Query: 67 DMYVSLGFLKDSSKL-FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRR 125
+MY + +++ L F ++ +N VTW +ITG +T + DG L ++++
Sbjct: 154 NMYATCSVTMEAAFLIFRDIKVKNDVTWTTLITG---FTHLGDGIG-------GLKMYKQ 203
Query: 126 MAACEYTEPSEITILAVLPAIWKNGEVRNC---QLIHGYGEKRGFNAFDIHVSNCLIDTY 182
M E +++T + A+ + + + + IH KRGF + ++ V N ++D Y
Sbjct: 204 M----LLENADVTPYCITIAVRASASIDSVTTGKQIHASVVKRGFQS-NLPVMNSILDFY 258
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+CG + A + F + ++ K+L++W T+IS EA+ F+R + G PN
Sbjct: 259 CRCGYLSEAKRYFHE--MEDKDLITWNTLISELERSD-SSEALLMFQRFESQGFVPN 312
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 88/177 (49%), Gaps = 15/177 (8%)
Query: 56 QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNR 115
+ H + T L Y G ++++ LFDE+PER++V W +IT GY+ N
Sbjct: 42 KKHHILATNLIVSYFEKGLVEEARSLFDEMPERDVVAWTAMIT----------GYASSNY 91
Query: 116 SNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS 175
++ A F M + P+E T+ +VL + + L+HG K G ++V
Sbjct: 92 NSCAWECFHEMFK-QGRSPNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEG-SLYVD 149
Query: 176 NCLIDTYAKCGCIFSASKL-FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
N L++ YA C A+ L F D V KN V+WTT+I+GF G G ++ +++M
Sbjct: 150 NALMNMYATCSVTMEAAFLIFRDIKV--KNDVTWTTLITGFTHLGDGIGGLKMYKQM 204
>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 600
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 155/294 (52%), Gaps = 28/294 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG--FLKDSSK 80
+ FT+ F+++ C + LG +H K GF+ V+V L MY LG + + K
Sbjct: 124 NKFTFPFVLKGCAGIGSLRLGKCVHGCVVKFGFEEDVHVLNTLIHMYCCLGEDGFEFAEK 183
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD+ P+ + VTW+ +I G V R+ S+ A+ LFR M P EIT++
Sbjct: 184 VFDDSPKMDTVTWSAMIAGFV----------RLGCSSRAVDLFREMQVMGVC-PDEITMV 232
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+VL A G + + + Y EK+ + + N LID +AKCG + A KLF +
Sbjct: 233 SVLSACADLGALELGKWVESYVEKKNIPK-SVELCNALIDMFAKCGNVDKAIKLFR--QM 289
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
D + +VSWT++I+G AMHG G +AV F+ M + G+ P+ IG ++G
Sbjct: 290 DSRTIVSWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGR 349
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+F M ++P ++HYGC++D+L R G +++A E +P + N ++WRT
Sbjct: 350 YYFGSMERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFE-PNQIIWRT 402
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/318 (23%), Positives = 132/318 (41%), Gaps = 22/318 (6%)
Query: 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF 74
++P L + + L C TLS TQ+HA K G Q++ + T +L
Sbjct: 9 NTPKTRLTEQTILTLLNSHCNTLSKL---TQIHAFILKTGLQNNPLILTKFTSTSSNLNS 65
Query: 75 LKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134
+ ++ P + + + +I YS+ S LF R P
Sbjct: 66 IHYATSFL--FPPSHTTSTPTPSYDAFLFNTLIRAYSQTRDSKSNSFLFYRTMLRYGVTP 123
Query: 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG--CIFSAS 192
++ T VL G +R + +HG K GF D+HV N LI Y G A
Sbjct: 124 NKFTFPFVLKGCAGIGSLRLGKCVHGCVVKFGFEE-DVHVLNTLIHMYCCLGEDGFEFAE 182
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI-------- 244
K+F+D+ + + V+W+ +I+GF G AV+ F MQ +G+ P+ +
Sbjct: 183 KVFDDSP--KMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVLSACAD 240
Query: 245 --GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
E K+ + VE+ + ++ LID+ + G +++A ++ + S+ +V W
Sbjct: 241 LGALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSR--TIVSWT 298
Query: 303 TGFLRLLINSYFFSPITL 320
+ L ++ ++L
Sbjct: 299 SVIAGLAMHGRGLDAVSL 316
>gi|357140545|ref|XP_003571826.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Brachypodium distachyon]
Length = 489
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 94/312 (30%), Positives = 156/312 (50%), Gaps = 38/312 (12%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKLFD 83
T+ FL R L+ P L LH+ ++G +++ + MY + + +LFD
Sbjct: 61 LTFPFLGRAAARLASPRLALSLHSHPLRLGLLPCDLHIANSFVHMYAACALPDLARRLFD 120
Query: 84 ELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALAL 122
E+P N V+WN ++ G +V W+ +IDG + EALAL
Sbjct: 121 EIPRPNPVSWNALLDGYAKCRDLSAAREVFDRMPHRDVVSWSAMIDGCVKCGEYREALAL 180
Query: 123 FRRMAACEY---TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
F M A +++T++++L A G++R + +H Y ++RGF ++ ++ L+
Sbjct: 181 FEMMEAAATGHGVRANDVTMISMLGACAHLGDLRRGRQMHRYLQERGF-LLNLRLATSLV 239
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D YAKCG I A ++F V +++ W +I G A+HGMG E VE F+ MQ G+ P+
Sbjct: 240 DMYAKCGAISEALEVFRAVPVASTDVLMWNAMIGGLAVHGMGMETVELFQEMQHSGVVPD 299
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
+G +E +FF + E + P ++HY CL+D+L RAGRLE+A V
Sbjct: 300 EITYLGLLSACVHGGLVDEAWRFFCSL-EAQGLRPHVEHYACLVDVLSRAGRLEEAYGVV 358
Query: 289 SGIPSQITNVVV 300
+P + + V+
Sbjct: 359 KSMPMEPSVSVL 370
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 69/140 (49%), Gaps = 16/140 (11%)
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV- 234
N L+D YAKC + +A ++F+ + +++VSW+ +I G G +EA+ FE M+
Sbjct: 131 NALLDGYAKCRDLSAAREVFD--RMPHRDVVSWSAMIDGCVKCGEYREALALFEMMEAAA 188
Query: 235 ---GLKPNRSWRIGEEGL----------KFFDKMVEECEVLPDIKHYGCLIDILERAGRL 281
G++ N I G + + ++E L +++ L+D+ + G +
Sbjct: 189 TGHGVRANDVTMISMLGACAHLGDLRRGRQMHRYLQERGFLLNLRLATSLVDMYAKCGAI 248
Query: 282 EQAEEVASGIPSQITNVVVW 301
+A EV +P T+V++W
Sbjct: 249 SEALEVFRAVPVASTDVLMW 268
>gi|242066664|ref|XP_002454621.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
gi|241934452|gb|EES07597.1| hypothetical protein SORBIDRAFT_04g034420 [Sorghum bicolor]
Length = 496
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 168/322 (52%), Gaps = 43/322 (13%)
Query: 16 SPLPPLFDSFTYSFLIRTCVT-----LSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV 70
SP P + T ++ C L+ P L LHA K+ F SH+ ++T L Y+
Sbjct: 61 SPAAPAPNDVTLLTVLSACADSPSSPLARP-LALTLHARALKL-FPSHLLLSTCLARFYL 118
Query: 71 SLGFLKDSSKLFDELPERNLVTWNVIITGL---------------------VKWTGIIDG 109
+ + +LFD +P R++VT+N +++GL V WT +IDG
Sbjct: 119 ASRLPHLALQLFDTMPVRSVVTYNTMVSGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDG 178
Query: 110 YSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNA 169
+ + R +EA+ FR M + EP +T++AV+ A + G + +H ++G
Sbjct: 179 FVKNGRHDEAIDCFRAML-LDSVEPDYVTLIAVVSACAEVGALGLGMWVHRLVLRQGLER 237
Query: 170 FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFE 229
++ V+N LID YA+CG + A+++F S+ ++ +VSW ++I G A +G+ EA+E FE
Sbjct: 238 -NVRVANSLIDMYARCGQVKLAAQVFH--SIRKRTVVSWNSMIVGLAANGLCTEAIELFE 294
Query: 230 RMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERA 278
M++ G KP+ G E GL+++D M E + ++HYGC++D+L RA
Sbjct: 295 EMRRQGFKPDAVTLTGVLTACSHAGLTEHGLRYYDLMTTEYGIAARMEHYGCVVDLLGRA 354
Query: 279 GRLEQAEEVASGIPSQITNVVV 300
GRL++A V +P + VV+
Sbjct: 355 GRLDEAMHVVETMPMRPNEVVL 376
>gi|224056897|ref|XP_002299078.1| predicted protein [Populus trichocarpa]
gi|222846336|gb|EEE83883.1| predicted protein [Populus trichocarpa]
Length = 488
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/346 (28%), Positives = 166/346 (47%), Gaps = 52/346 (15%)
Query: 3 VYKQLQQIY----IHSHSPLPPLF-----------DSFTYSFLIRTCVTLSYPNLGTQLH 47
Y + QIY I P P +F D+FTY+F+++ C L P G Q+H
Sbjct: 55 AYVTMSQIYYAFSIFERIPSPDVFVYNTMIRGLTMDNFTYTFVLKACSHLKAPFEGKQVH 114
Query: 48 AVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV------ 101
K G +++++L MY + G + D+ ++ E E N + N +I+G +
Sbjct: 115 CQIIKAGIVPDTHIHSSLIHMYTNSGSIDDAERVLGEFSEENTLAKNAMISGYLTEGRVD 174
Query: 102 ---------------KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI 146
W+ +I GY++ EALALF+ M + P+E ++++L A
Sbjct: 175 KARKMFDDMAAKDAASWSALITGYTKNGMHTEALALFQDMMV-SHILPNEAALVSLLSAC 233
Query: 147 WKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLV 206
+ G + + IH Y +K ++ LID YAK G I LF+ + R+++V
Sbjct: 234 GQLGTLHQGRWIHAYIDKTRV-LMSTKLTTALIDMYAKSGSIECGYGLFQKMA--RRDVV 290
Query: 207 SWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKM 255
+W +IS FA+HG + + F+ M G++PN+ + EEG ++F +M
Sbjct: 291 TWGVMISAFAIHGHASKCFQLFDEMLADGIRPNKVIFVAILSACSHAGCVEEGRQYFSQM 350
Query: 256 VEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ P I+HYGC++D+L RAG L AE++ +P Q N ++W
Sbjct: 351 EHGFGIKPSIEHYGCMVDLLGRAGLLADAEQLILSMPKQ-PNSIIW 395
>gi|15217517|ref|NP_174603.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75168867|sp|Q9C501.1|PPR70_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g33350
gi|12322383|gb|AAG51215.1|AC051630_12 unknown protein; 15445-13829 [Arabidopsis thaliana]
gi|12322567|gb|AAG51281.1|AC027035_4 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332193465|gb|AEE31586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 538
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 159/308 (51%), Gaps = 39/308 (12%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS-LGFLKDS 78
P + F Y ++++ LS +H K GF +V V TAL Y S + + +
Sbjct: 122 PRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYASSVSHITLA 181
Query: 79 SKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSN 117
+LFDE+ ERN+V+W +++G + W I+ ++
Sbjct: 182 RQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFL 241
Query: 118 EALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
EA++LFRRM P+E+T++ VL A + G ++ + IH + +R ++ D+ VSN
Sbjct: 242 EAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSS-DVFVSNS 300
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL- 236
L+D Y KCG + AS +F+ S +K+L +W ++I+ FA+HG +EA+ FE M K+ +
Sbjct: 301 LVDLYGKCGNLEEASSVFKMAS--KKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNIN 358
Query: 237 --KPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQ 283
KP+ IG +G +FD M + P I+HYGCLID+L RAGR ++
Sbjct: 359 DIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDE 418
Query: 284 AEEVASGI 291
A EV S +
Sbjct: 419 ALEVMSTM 426
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 17/184 (9%)
Query: 115 RSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHV 174
++ A + FR M P+ VL + + L+H + K GF+ + + V
Sbjct: 105 HASSAFSFFRLMVNRSVPRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVV-V 163
Query: 175 SNCLIDTYA-KCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
L+ +YA I A +LF++ S +N+VSWT ++SG+A G AV FE M +
Sbjct: 164 QTALLHSYASSVSHITLARQLFDEMS--ERNVVSWTAMLSGYARSGDISNAVALFEDMPE 221
Query: 234 VGLKPNRSWR----------IGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQ 283
+ SW + E + F +M+ E + P+ C++ + G L+
Sbjct: 222 RDVP---SWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQL 278
Query: 284 AEEV 287
A+ +
Sbjct: 279 AKGI 282
>gi|347954508|gb|AEP33754.1| chloroplast biogenesis 19, partial [Nasturtium officinale]
Length = 447
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 150/292 (51%), Gaps = 37/292 (12%)
Query: 42 LGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG- 99
LG LH K+G ++HV V TA+ MY G + + +FD + ++N VTWN +I G
Sbjct: 38 LGDLLHGYACKLGLDRTHVMVGTAILGMYSKRGRFRKARLIFDYMEDKNSVTWNTMIDGY 97
Query: 100 --------------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
L+ WT +++G+ + EAL+ FR M +P + I
Sbjct: 98 MRSGQVNTAVKLFDEMLNRDLISWTAMVNGFVKKGFHEEALSWFREMQ-ISGVKPDYVAI 156
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+A L A G + IH Y + F ++ VSN LID Y +CGC+ A ++F+
Sbjct: 157 IAALAACTNLGALSFGLWIHRYVMSQDFKN-NVRVSNSLIDLYCRCGCVEFARQVFD--K 213
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
++++ +VSW ++I GFA +G E++ F +MQ+ G KP+ G EEG
Sbjct: 214 MEKRTVVSWNSVIVGFAANGNAHESLFYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEG 273
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
L++F M + + P I+HYGC++D+ RAGRLE A +V +P + VV+
Sbjct: 274 LRYFQTMKRDYRISPRIEHYGCIVDLYSRAGRLEDALKVVQSMPMKPNEVVI 325
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 89/190 (46%), Gaps = 14/190 (7%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
+ C L + G +H F+++V V+ +L D+Y G ++ + ++FD++ +R +
Sbjct: 160 LAACTNLGALSFGLWIHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTV 219
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
V+WN +I G++ ++E+L FR+M E +P +T L A G
Sbjct: 220 VSWNSVIV----------GFAANGNAHESLFYFRKMQE-EGFKPDAVTFTGALTACSHVG 268
Query: 151 EVRNCQLIHGYGEKRGFN-AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWT 209
V L + KR + + I C++D Y++ G + A K+ + + + N V
Sbjct: 269 LVEE-GLRYFQTMKRDYRISPRIEHYGCIVDLYSRAGRLEDALKVVQSMPM-KPNEVVIG 326
Query: 210 TIISGFAMHG 219
++++ HG
Sbjct: 327 SLLAACKNHG 336
>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 157/311 (50%), Gaps = 37/311 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+++T+ FL++ C ++S Q+HA K+GF S +Y +L ++Y G +K + LF
Sbjct: 117 NAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLF 176
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
D++ +R+ V+WN +I G ++ WT +I G + EAL
Sbjct: 177 DQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALN 236
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF RM + + +++ L A G + + IH Y +K D + LID
Sbjct: 237 LFHRMQTAG-IKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIE-IDPILGCVLIDM 294
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG + A ++F ++ K + WT +ISG+A+HG G+EA+E F +MQ G++PN+
Sbjct: 295 YAKCGDLEEAIEVFR--KMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQM 352
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
G E F+ M P I+HYGC++D+L RAG L++AEE+
Sbjct: 353 TFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIEN 412
Query: 291 IPSQITNVVVW 301
+P + N +W
Sbjct: 413 MPVK-PNAAIW 422
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 110/276 (39%), Gaps = 69/276 (25%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM------ 126
G L + +FD + N WN +I GYS EAL L+ M
Sbjct: 66 GSLAYARTVFDRIFRPNTFMWNTMIR----------GYSNSKEPEEALLLYHHMLYHSVP 115
Query: 127 ----------AACEYTEPSE------------------ITILAVLPAIWKNGEVRNCQLI 158
AC SE T ++L K+G++++ +L+
Sbjct: 116 HNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLL 175
Query: 159 HGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218
++R D N +ID Y KCG I A ++F + +N++SWT++ISG
Sbjct: 176 FDQVDQR-----DTVSWNSMIDGYTKCGEIEMAYEIF--NHMPERNIISWTSMISGCVGA 228
Query: 219 GMGKEAVENFERMQKVGLKPNRSWRIGE----EGLKFFDK--------MVEECEVLPDIK 266
G KEA+ F RMQ G+K + + L D+ E E+ P +
Sbjct: 229 GKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPIL- 287
Query: 267 HYGC-LIDILERAGRLEQAEEVASGIPSQITNVVVW 301
GC LID+ + G LE+A EV + + V VW
Sbjct: 288 --GCVLIDMYAKCGDLEEAIEVFRKMEEK--GVSVW 319
>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Glycine max]
Length = 661
Score = 158 bits (400), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 156/292 (53%), Gaps = 34/292 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ TY FL++ G +H+V + GF+S V+V +L +Y + G + + +F
Sbjct: 129 DTHTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVF 188
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + +R+LV +I+G++ R +EAL LFR M+A E EP T++++
Sbjct: 189 ELMRDRDLVAX----------ISVINGFALNGRPSEALTLFREMSA-EGVEPDGFTVVSL 237
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + G + + +H Y K G + HV+N L+D YAKC I+
Sbjct: 238 LSASAELGALELGRRVHVYLLKVGLRE-NSHVTNSLLDLYAKCDAIWEX----------E 286
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+N VSWT++I G A++G G+EA+E F M+ GL P+ +G +EG +
Sbjct: 287 RNAVSWTSLIVGLAVNGFGEEALELFREMEGQGLVPSEITFVGVLYACSHCGMLDEGFDY 346
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F +M EE ++P I+HYGC++D+L RAG ++QA E +P Q N V WRT
Sbjct: 347 FRRMKEEFGIMPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQ-PNAVTWRT 397
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 101/213 (47%), Gaps = 21/213 (9%)
Query: 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP 86
++F IR V L+ P++G H +F+ V + + + +S + +F +
Sbjct: 39 HAFSIRHGVLLNNPDMGK--HLIFTIVSLSAPMSYAYNVFTWVLSYAY-----NVFTMIH 91
Query: 87 ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI 146
N+ TWN + G Y+ + + AL +R+M EP T +L AI
Sbjct: 92 NPNVFTWNTMTRG----------YAESDNPSPALRFYRQMIVSR-IEPDTHTYPFLLKAI 140
Query: 147 WKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLV 206
K+ VR + IH + GF + + V N L+ YA CG SA +FE + ++LV
Sbjct: 141 SKSLNVREGEAIHSVTIRNGFESL-VFVQNSLLHIYAACGDTESAHNVFE--LMRDRDLV 197
Query: 207 SWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+ ++I+GFA++G EA+ F M G++P+
Sbjct: 198 AXISVINGFALNGRPSEALTLFREMSAEGVEPD 230
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 99/233 (42%), Gaps = 50/233 (21%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT L+ L LG ++H KVG + + +V +L D+Y + +
Sbjct: 230 DGFTVVSLLSASAELGALELGRRVHVYLLKVGLRENSHVTNSLLDLYAKCDAIWEX---- 285
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
ERN V+W +I GL ++G+ EAL LFR M + PSEIT + V
Sbjct: 286 ----ERNAVSWTSLIVGLA-----VNGFGE-----EALELFREMEG-QGLVPSEITFVGV 330
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFD-----------IHVSNCLIDTYAKCGCIFSA 191
L A +C ++ GF+ F I C++D ++ G + A
Sbjct: 331 LYA------CSHCGML-----DEGFDYFRRMKEEFGIMPRIEHYGCMVDLLSRAGLVKQA 379
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMH---GMGKEAVENFERMQKVGLKPNRS 241
+ ++ V + N V+W T++ +H G+G+ A R + L+P S
Sbjct: 380 YEYIQNMPV-QPNAVTWRTLLGACTIHGHLGLGETA-----RSHLLKLEPKHS 426
>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 99/310 (31%), Positives = 155/310 (50%), Gaps = 38/310 (12%)
Query: 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF 74
H + P + FTY LIR C G Q+HA K GF + + L MYV+
Sbjct: 113 HKSVSP--NKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQS 170
Query: 75 LKDSSKLFDELPERNLVTWNVIITGL---------------------VKWTGIIDGYSRM 113
L+ + ++FD +P+R++V+W +ITG V W +I Y +
Sbjct: 171 LEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQS 230
Query: 114 NRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIH 173
NR +EA ALF RM E + ++L A G + + IHGY EK G D
Sbjct: 231 NRLHEAFALFDRM-RLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIE-LDSK 288
Query: 174 VSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
++ +ID Y KCGC+ AS++F + + +K + SW +I G AMHG G+ A+E F+ M++
Sbjct: 289 LATTVIDMYCKCGCLEKASEVFNE--LPQKGISSWNCMIGGLAMHGKGEAAIELFKEMER 346
Query: 234 VGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLE 282
+ P+ + EEG +F M E + P ++H+GC++D+L RAG LE
Sbjct: 347 EMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLE 406
Query: 283 QAEEVASGIP 292
+A ++ + +P
Sbjct: 407 EARKLINEMP 416
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 98/233 (42%), Gaps = 34/233 (14%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
+ D F + ++ C L G +H K G + + T + DMY G L+ +S+
Sbjct: 249 VLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASE 308
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F+ELP++ + +WN +I GL + + A+ LF+ M E P IT +
Sbjct: 309 VFNELPQKGISSWNCMIGGL----------AMHGKGEAAIELFKEMER-EMVAPDGITFV 357
Query: 141 AVLPAIWKNGEVRNCQLIHGY-----GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
VL A +G V + Y G K G F C++D + G + A KL
Sbjct: 358 NVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHF-----GCMVDLLGRAGLLEEARKLI 412
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-----LKPNRSWR 243
+ V+ V ++ +HG N E +++G L+P+ S R
Sbjct: 413 NEMPVNPDAGV-LGALVGACRIHG-------NTELGEQIGKKVIELEPHNSGR 457
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 20/162 (12%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVKWT---GIIDGYSRMNRSNEALALFRRMAAC 129
G L + ++FD++P + +N I G ++W I YSRM L + ++
Sbjct: 68 GDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRM--------LHKSVSPN 119
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
++T P I + AI + + IH + K GF A ++N LI Y +
Sbjct: 120 KFTYPPLIRACCIDYAIEEGKQ------IHAHVLKFGFGADGFSLNN-LIHMYVNFQSLE 172
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
A ++F++ + ++++VSWT++I+G++ G +A E FE M
Sbjct: 173 QARRVFDN--MPQRDVVSWTSLITGYSQWGFVDKAREVFELM 212
>gi|449443327|ref|XP_004139431.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
gi|449521082|ref|XP_004167560.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Cucumis sativus]
Length = 583
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/270 (34%), Positives = 148/270 (54%), Gaps = 27/270 (10%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G +H V + F+ ++ + A+ DMYV G ++ +FDELP R++V+W ++ITGLV+
Sbjct: 222 GKGIHGVIER-RFKVNLVLGNAMLDMYVKNGCFYEAKNIFDELPTRDIVSWTIMITGLVQ 280
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
+ ++L LF M + P I + +VL A G + +H Y
Sbjct: 281 ----------SDHPKQSLELFSMMRTLGIS-PDAIILTSVLSACASLGTLDFGTWVHEYI 329
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
+RG +DIH+ ++D YAKCGCI A K+F S+ ++N +W ++ G AMHG+
Sbjct: 330 NQRGIK-WDIHIGTAIVDMYAKCGCIEMALKIF--YSMSQRNTFTWNALLCGLAMHGLVH 386
Query: 223 EAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCL 271
EA+ FE M G+KPN + +EG K+FD M + +LP ++HYGC+
Sbjct: 387 EALNLFEVMIISGVKPNEITFLAILTACCHCGLVDEGRKYFDNMSKLYNLLPKLEHYGCM 446
Query: 272 IDILERAGRLEQAEEVASGIPSQITNVVVW 301
ID+ RAG LE+A E+A +P + +V++W
Sbjct: 447 IDLFCRAGLLEEAVELARTMPMK-PDVLIW 475
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 118/217 (54%), Gaps = 18/217 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ L++ C S G Q+H V K+G + YV +L Y + G + K+F
Sbjct: 104 DMFTFPVLLKACSNFSGSREGRQVHGVVVKLGLLADHYVQNSLIRCYGACGDFSCAGKVF 163
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ R++V+WN +I+G +K +EA+++F RM EPS T+++V
Sbjct: 164 DEMLVRDVVSWNSLISGFMK----------AGHFDEAISVFFRMD----VEPSMTTLVSV 209
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A +NG++ + IHG E+R ++ + N ++D Y K GC + A +F++ +
Sbjct: 210 LAACARNGDLCTGKGIHGVIERR--FKVNLVLGNAMLDMYVKNGCFYEAKNIFDE--LPT 265
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+++VSWT +I+G K+++E F M+ +G+ P+
Sbjct: 266 RDIVSWTIMITGLVQSDHPKQSLELFSMMRTLGISPD 302
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 11/172 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ + ++ C +L + GT +H ++ G + +++ TA+ DMY G ++ + K+F
Sbjct: 302 DAIILTSVLSACASLGTLDFGTWVHEYINQRGIKWDIHIGTAIVDMYAKCGCIEMALKIF 361
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ +RN TWN ++ GL G++ +EAL LF M +P+EIT LA+
Sbjct: 362 YSMSQRNTFTWNALLCGLAM-HGLV---------HEALNLFEVMII-SGVKPNEITFLAI 410
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
L A G V + K + C+ID + + G + A +L
Sbjct: 411 LTACCHCGLVDEGRKYFDNMSKLYNLLPKLEHYGCMIDLFCRAGLLEEAVEL 462
>gi|449447637|ref|XP_004141574.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Cucumis sativus]
Length = 542
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 107/346 (30%), Positives = 168/346 (48%), Gaps = 71/346 (20%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTAL-------GDM------- 68
D FT+SF+++ C LS+ LG +H K GFQS+ +V L GD+
Sbjct: 112 DKFTFSFVLKACTKLSWVKLGFGIHGKVLKSGFQSNTFVRNTLIYFHANCGDLATARALF 171
Query: 69 -----------------YVSLGFLKDSSKLFDELPERNLVTWNVIITG------------ 99
Y G L + +LFDE+P ++LV+WNV+IT
Sbjct: 172 DASAKREVVPWSALTAGYARRGKLDVARQLFDEMPMKDLVSWNVMITAYAKHGEMEKARK 231
Query: 100 ---------LVKWTGIIDGY--SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148
+V W +I GY SR+N+ EAL +F M P ++T+L++L A
Sbjct: 232 LFDEVPKKDVVTWNAMIAGYVLSRLNK--EALEMFDAMRDLG-QRPDDVTMLSILSASAD 288
Query: 149 NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSW 208
G++ + IH + +SN LID YAKCG I +A ++F+ + +K+ SW
Sbjct: 289 LGDLEIGKKIHRSIFDMCCGDLSVLLSNALIDMYAKCGSIGNALEVFQ--GMRKKDTSSW 346
Query: 209 TTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVE 257
+II G A+HG +E++ F+ M ++ +KPN + EG +F+ M
Sbjct: 347 NSIIGGLALHGHAEESINLFQEMLRLKMKPNEITFVAVLVACSHAGKVREGRMYFNLMKN 406
Query: 258 ECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++ P+IKHYGC++DIL RAG L +A + + + N ++WRT
Sbjct: 407 VFKIEPNIKHYGCMVDILGRAGLLIEAFDFIDTMEIE-PNAIIWRT 451
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 102/219 (46%), Gaps = 24/219 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLH-AVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D T ++ L +G ++H ++F V ++ AL DMY G + ++ ++
Sbjct: 275 DDVTMLSILSASADLGDLEIGKKIHRSIFDMCCGDLSVLLSNALIDMYAKCGSIGNALEV 334
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F + +++ +WN II GL + G++ E++ LF+ M + +P+EIT +A
Sbjct: 335 FQGMRKKDTSSWNSIIGGLA-----LHGHAE-----ESINLFQEMLRLKM-KPNEITFVA 383
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS----NCLIDTYAKCGCIFSASKLFED 197
VL A G+VR ++ + N F I + C++D + G + A F D
Sbjct: 384 VLVACSHAGKVREGRMYFNLMK----NVFKIEPNIKHYGCMVDILGRAGLLIEAFD-FID 438
Query: 198 TSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQK 233
T N + W T++ +HG +G+ A E +M+K
Sbjct: 439 TMEIEPNAIIWRTLLGACRVHGDVELGRRANEQLLKMRK 477
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 126/313 (40%), Gaps = 61/313 (19%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL----GFLKD 77
F+ F S L + C QLHA G S V L ++VS G +
Sbjct: 11 FNRFQQSSLWQKCTNFRSLK---QLHAFLIVNGLNSTTSVLREL--IFVSAIVVSGTMDY 65
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
+ +LF ++ + ++ WN +I G ++ + A++L+ +M P +
Sbjct: 66 AHQLFAQISQPDIFMWNTMIR----------GSAQTLKPATAVSLYTQMEN-RGVRPDKF 114
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
T VL A K V+ IHG K GF + + V N LI +A CG + +A LF+
Sbjct: 115 TFSFVLKACTKLSWVKLGFGIHGKVLKSGFQS-NTFVRNTLIYFHANCGDLATARALFDA 173
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVE 257
++ ++ +V W+ + +G+A G A + F+ M
Sbjct: 174 SA--KREVVPWSALTAGYARRGKLDVARQLFDEMP------------------------- 206
Query: 258 ECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSP 317
+ D+ + +I + G +E+A ++ +P + +VV W +I Y S
Sbjct: 207 ----MKDLVSWNVMITAYAKHGEMEKARKLFDEVPKK--DVVTWNA-----MIAGYVLS- 254
Query: 318 ITLNSQRLFFFPA 330
LN + L F A
Sbjct: 255 -RLNKEALEMFDA 266
>gi|449444397|ref|XP_004139961.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g03510-like [Cucumis sativus]
Length = 391
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 161/308 (52%), Gaps = 37/308 (12%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D+ +S ++++C L P+LG +HA +K S +V AL DMY + + KL
Sbjct: 9 LDAHVFSLVLKSCTALRRPHLGIAIHAHSAKSSLLSSPFVACALVDMYGKSLSVTLARKL 68
Query: 82 FDELPERNLVTWNVIITGLV----------------------KWTGIIDGYSRMNRSNEA 119
FDE+P R++V WNV+++ V + I+ G S++ +A
Sbjct: 69 FDEIPHRSVVVWNVMLSLYVHANMLFGALQLFEAMDVPPNASSFNAIVAGLSKLEDGFKA 128
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
+A +R+M C +P+ IT+LA+LPA + + IHG+ + A + +S+ L+
Sbjct: 129 IAFYRQMQQCGL-KPNLITLLALLPASVGVASLDLIKQIHGFAMRNDIGAH-LQLSSGLV 186
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+ Y +CGC+ A +F++ + +++V+W+++IS A+HG A+ F++M+ ++P+
Sbjct: 187 EAYGRCGCLSYAHNVFDNMT--ERDVVAWSSLISAHALHGEASTALNIFQQMESCKVQPD 244
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
IG E L +F++M + + HY CL+D+L RAGRL +A ++
Sbjct: 245 EITFIGVLKACSHVGLANEALDYFNRMQRDYGLQASSDHYSCLVDVLSRAGRLHEAYDII 304
Query: 289 SGIPSQIT 296
+P ++T
Sbjct: 305 REMPVRVT 312
>gi|449441630|ref|XP_004138585.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
mitochondrial-like [Cucumis sativus]
Length = 600
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/283 (33%), Positives = 150/283 (53%), Gaps = 25/283 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+S L+ +C LG QLH + K F + V ++L ++Y L D+ K+F
Sbjct: 208 DDFTFSSLLSSCKYKGSGELGKQLHCLLIKQSFDLDILVASSLVNVYTKNDNLYDARKVF 267
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+P RN V+W +I GY + EA+ LFRRM +Y P E+T +V
Sbjct: 268 DEMPTRNSVSWTTMIV----------GYGQHEYGKEAVKLFRRMFRKDYC-PDELTFASV 316
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + +H K GF AF + ++N LI Y+KCG I +A + F +
Sbjct: 317 LSSCGFTSGASELMQVHSCLIKLGFEAF-LSINNGLIYAYSKCGIIAAALQCFR--LIAE 373
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+LV+WT+II G A+ G+ K+AV+ F++M G++P++ +G GL +
Sbjct: 374 PDLVTWTSIICGLALCGLEKDAVKLFDKMLSYGIRPDKIAFLGVLSACSHGGFVSMGLHY 433
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
F+ M + +++PD +H CLID+L RAG L+QA ++ +P +
Sbjct: 434 FNLMTNQYQLVPDSEHLTCLIDLLGRAGSLDQAFDLLKSMPKE 476
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 112/217 (51%), Gaps = 14/217 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T++ L R+CV L+ G QLH+ K+GF +V +A+ D Y G +D+ F
Sbjct: 107 DGITFNGLFRSCVVLNDVESGRQLHSFVMKIGFDLDCFVGSAVVDFYAKCGLYEDARLAF 166
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ R+LV WNV++ + + + SR EA+ +FR M E + + T ++
Sbjct: 167 SCILYRDLVLWNVML-----YCCVFNSLSR-----EAIEVFRLMQL-EGFKGDDFTFSSL 215
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + G + +H K+ F+ DI V++ L++ Y K ++ A K+F++
Sbjct: 216 LSSCKYKGSGELGKQLHCLLIKQSFD-LDILVASSLVNVYTKNDNLYDARKVFDEMPT-- 272
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+N VSWTT+I G+ H GKEAV+ F RM + P+
Sbjct: 273 RNSVSWTTMIVGYGQHEYGKEAVKLFRRMFRKDYCPD 309
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/296 (21%), Positives = 120/296 (40%), Gaps = 49/296 (16%)
Query: 19 PPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
PPL + L+ + + +L + K+G + + V L +YV L +
Sbjct: 23 PPLTPT---ELLLNSHILFINADLDVDPLCLVVKLGLVNELSVQNKLLRVYVKCRDLDSA 79
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
LFDE+ RN+++ + G+ G++D P IT
Sbjct: 80 RNLFDEMARRNVLS----MAGMEMLMGLVD-------------------------PDGIT 110
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+ + +V + + +H + K GF+ D V + ++D YAKCG A F +
Sbjct: 111 FNGLFRSCVVLNDVESGRQLHSFVMKIGFD-LDCFVGSAVVDFYAKCGLYEDARLAF--S 167
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEE 247
+ ++LV W ++ + + +EA+E F MQ G K + + GE
Sbjct: 168 CILYRDLVLWNVMLYCCVFNSLSREAIEVFRLMQLEGFKGDDFTFSSLLSSCKYKGSGEL 227
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
G + ++++ L DI L+++ + L A +V +P++ N V W T
Sbjct: 228 GKQLHCLLIKQSFDL-DILVASSLVNVYTKNDNLYDARKVFDEMPTR--NSVSWTT 280
>gi|115477124|ref|NP_001062158.1| Os08g0500600 [Oryza sativa Japonica Group]
gi|42407356|dbj|BAD08817.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|42407750|dbj|BAD08896.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113624127|dbj|BAF24072.1| Os08g0500600 [Oryza sativa Japonica Group]
Length = 429
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 139/255 (54%), Gaps = 39/255 (15%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYS 111
G L + K+FDE+P RNLV+WN ++ G +V WT +I GY+
Sbjct: 102 GLLPLARKMFDEMPVRNLVSWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYA 161
Query: 112 RMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF---N 168
+ R + L LFR M +P+E+T+++VL A + + +H + +K N
Sbjct: 162 QAGRYQDTLELFRAMQTESNVQPNEVTMVSVLSACANLTALEEGRWVHAFIDKHKMVLNN 221
Query: 169 AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENF 228
+++ + LID YAKCG A K+F S+DRKN+ +W +I+ AM+G +++V+ F
Sbjct: 222 EYNLGAA--LIDMYAKCGRTDIAVKIF--NSLDRKNVSAWNALITRLAMNGNARDSVDAF 277
Query: 229 ERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILER 277
E+M++ G KPN +G +EG + F M C V P++KHYGC++D+L R
Sbjct: 278 EQMKRTGEKPNDITFVGVLTACSHGGLVDEGRRCFQSMASTCGVQPEVKHYGCMVDMLGR 337
Query: 278 AGRLEQAEEVASGIP 292
AG LE+AEE+ +P
Sbjct: 338 AGLLEEAEELIRSMP 352
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 15/135 (11%)
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
++ YA G + A ++F+ +N+V+W ++++GFA HG+ A + F+ M L
Sbjct: 61 MVGGYAAAGELDVAREMFDRMPAIGRNVVTWNSMVTGFARHGLLPLARKMFDEMPVRNLV 120
Query: 238 PNRSWRIGEEGLKF---FDKMVEECEVLP--DIKHYGCLIDILERAGRLEQAEEVASGI- 291
SW G D E +V+P D+ + C+I +AGR + E+ +
Sbjct: 121 ---SWNAMLRGYSVNSDMDGARELFDVMPEKDVVSWTCMISGYAQAGRYQDTLELFRAMQ 177
Query: 292 ------PSQITNVVV 300
P+++T V V
Sbjct: 178 TESNVQPNEVTMVSV 192
>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 679
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 113/382 (29%), Positives = 167/382 (43%), Gaps = 100/382 (26%)
Query: 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF 74
H LP D+FT +I+ C L G Q+H + K+GF S V+V +L +MY G
Sbjct: 106 HEYLP---DNFTLPCVIKGCARLGVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGE 162
Query: 75 LKDSSKLFD-------------------------------ELPERNLVTWNVIITG---- 99
+ + K+FD E+PER+ +W V++ G
Sbjct: 163 IDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFEEMPERDAFSWTVLVDGLSKC 222
Query: 100 -----------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEY----------- 131
LV W +I+GY + + AL LF +M +
Sbjct: 223 GKVESARKLFDQMPCRNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYE 282
Query: 132 -------------------TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDI 172
+ PS T+++VL A+ + + IH Y EK GF D
Sbjct: 283 LNGQFMDAVKMFFMMLKLGSRPSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFE-LDG 341
Query: 173 HVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQ 232
+ LI+ YAKCGCI SA +F ++ +K + WT II G +HGM A+ F M
Sbjct: 342 ILGTSLIEMYAKCGCIESALTVFR--AIQKKKVGHWTAIIVGLGIHGMANHALALFLEMC 399
Query: 233 KVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRL 281
K GLKPN IG ++G ++FD M+ E ++ P ++HYGCL+DIL RAG L
Sbjct: 400 KTGLKPNAIIFIGVLNACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHL 459
Query: 282 EQAEEVASGIPSQITNVVVWRT 303
E+A+ +P N V+W +
Sbjct: 460 EEAKNTIENMPIS-PNKVIWMS 480
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 141/307 (45%), Gaps = 48/307 (15%)
Query: 37 LSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS--LGFLKDSSKLFDELPERNLVTWN 94
L P QLHA K +H +V++ L +Y + L + +FD + R+L+ WN
Sbjct: 23 LCAPQEVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQRRSLIHWN 82
Query: 95 VIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRN 154
II Y S++ + LF + EY P T+ V+ + G V+
Sbjct: 83 TIIK----------CYVENQFSHDGIVLFHELVH-EYL-PDNFTLPCVIKGCARLGVVQE 130
Query: 155 CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISG 214
+ IHG K GF + D+ V L++ Y+KCG I A K+F D +D K++V W ++I G
Sbjct: 131 GKQIHGLALKIGFGS-DVFVQGSLVNMYSKCGEIDCARKVF-DGMID-KDVVLWNSLIDG 187
Query: 215 FAMHGMGKEAVENFERMQKVGLKPNR---SWRIGEEGL----------KFFDKMVEECEV 261
+A G A++ FE M P R SW + +GL K FD+M C
Sbjct: 188 YARCGEIDIALQLFEEM------PERDAFSWTVLVDGLSKCGKVESARKLFDQM--PCR- 238
Query: 262 LPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLN 321
++ + +I+ ++G + A E+ +P I ++V W L+I Y + ++
Sbjct: 239 --NLVSWNAMINGYMKSGDFDSALELFYQMP--IWDLVTW-----NLMIAGYELNGQFMD 289
Query: 322 SQRLFFF 328
+ ++FF
Sbjct: 290 AVKMFFM 296
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 34/188 (18%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G +H+ K GF+ + T+L +MY G ++ + +F + ++ + W II GL
Sbjct: 325 GRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKKVGHWTAIIVGL-- 382
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
G M +N ALALF M +P+ I + VL A G V +
Sbjct: 383 ------GIHGM--ANHALALFLEMCKTGL-KPNAIIFIGVLNACNHAGLVDD-------- 425
Query: 163 EKRGFNAFDIHVS-----------NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTI 211
G FD+ ++ CL+D + G + A E+ + N V W ++
Sbjct: 426 ---GRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPIS-PNKVIWMSL 481
Query: 212 ISGFAMHG 219
+ G HG
Sbjct: 482 LGGSRNHG 489
>gi|449441061|ref|XP_004138302.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
gi|449477575|ref|XP_004155061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 506
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 105/296 (35%), Positives = 150/296 (50%), Gaps = 33/296 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FT+SFL++ L LG QLH K+G SHVYV L MY L + + LF
Sbjct: 154 DNFTFSFLLKMTGQLGSIMLGKQLHVNILKLGLDSHVYVRNTLIHMYGRLKDVNIARNLF 213
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DELP+ +LV WN +ID + NEAL LF +M EP E T++
Sbjct: 214 DELPKTDLVAWN----------AVIDCHVSCGMYNEALDLFVQMLQSG-VEPDEATLVVT 262
Query: 143 LPAIWKNGEVRNCQLIHGY--GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+ A G + + +H + RG I V N LID YAKCG + A ++F +V
Sbjct: 263 ISACSALGALDCGRWVHSHVNSNDRGKT---IAVFNSLIDMYAKCGAVEYAREMF--NAV 317
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERM-------------QKVGLKPNRSWRIGEE 247
KN+V+W T+I G A HG ++A+ F M V N ++ EE
Sbjct: 318 SGKNIVTWNTMIMGLATHGDAEDALTLFSNMLAERVETPDGVTFLAVLCACNYGGKV-EE 376
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
G ++FD M + + P +KHYG ++DIL RAG +E+A ++ +P + N V+WRT
Sbjct: 377 GRRYFDLMTKHFNIQPTLKHYGSMVDILGRAGFVEEAYQLIKSMPME-CNAVIWRT 431
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 70/311 (22%), Positives = 131/311 (42%), Gaps = 31/311 (9%)
Query: 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV--SLGFLKDSSKLFDE 84
+ FL + C TL N QLHA ++GF +++V L D G + + +FD
Sbjct: 58 FMFLFKQCSTLKDLN---QLHASIIRLGFDQNLFVIGKLIDFCAVSDHGDMNYAVVVFDR 114
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ + WN +I G+ R + A ++RM + T +L
Sbjct: 115 IENADGFLWNTMIR----------GFGRNRKLLMAFEFYKRMLE-KGIAADNFTFSFLLK 163
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
+ G + + +H K G ++ ++V N LI Y + + A LF++ + + +
Sbjct: 164 MTGQLGSIMLGKQLHVNILKLGLDSH-VYVRNTLIHMYGRLKDVNIARNLFDE--LPKTD 220
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI----------GEEGLKFFDK 254
LV+W +I GM EA++ F +M + G++P+ + + + ++
Sbjct: 221 LVAWNAVIDCHVSCGMYNEALDLFVQMLQSGVEPDEATLVVTISACSALGALDCGRWVHS 280
Query: 255 MVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYF 314
V + I + LID+ + G +E A E+ + + + N+V W T + L +
Sbjct: 281 HVNSNDRGKTIAVFNSLIDMYAKCGAVEYAREMFNAVSGK--NIVTWNTMIMGLATHGDA 338
Query: 315 FSPITLNSQRL 325
+TL S L
Sbjct: 339 EDALTLFSNML 349
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 27/205 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T I C L + G +H+ + + V +L DMY G ++ + ++F
Sbjct: 255 DEATLVVTISACSALGALDCGRWVHSHVNSNDRGKTIAVFNSLIDMYAKCGAVEYAREMF 314
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + +N+VTWN +I GL + + +AL LF M A P +T LAV
Sbjct: 315 NAVSGKNIVTWNTMIMGL----------ATHGDAEDALTLFSNMLAERVETPDGVTFLAV 364
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS--------NCLIDTYAKCGCIFSASKL 194
L A G+V +R F+ H + ++D + G + A +L
Sbjct: 365 LCACNYGGKVEE--------GRRYFDLMTKHFNIQPTLKHYGSMVDILGRAGFVEEAYQL 416
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHG 219
+ ++ N V W T+++ MHG
Sbjct: 417 IKSMPME-CNAVIWRTLLAACQMHG 440
>gi|297842491|ref|XP_002889127.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297334968|gb|EFH65386.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 466
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 170/323 (52%), Gaps = 38/323 (11%)
Query: 3 VYKQLQQIYIHSHSPLPP------------LFDSFTYSFLIRTCVTLSYPNLGTQLHAVF 50
++ + + YI SPL L D +T +I+ V + LG QLH+V
Sbjct: 83 LWNNIMRSYIRHDSPLDSVQVYLGMVRSNVLPDRYTLPIVIKAAVQIHDFPLGKQLHSVA 142
Query: 51 SKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGY 110
++GF + + +Y G L+++ +FDE PER L +WN II GL
Sbjct: 143 VRLGFVGDEFCESGFITLYCKAGELENARNVFDENPERKLGSWNAIIGGL---------- 192
Query: 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNC-QLIHGYGEKRGFNA 169
+ R+NEA+ +F M + EP + T+++V A G++ QL + +
Sbjct: 193 NHAGRANEAVEMFMEMRRSGF-EPDDFTMVSVTSACGGLGDLNLAFQLHKCVLQAKTEEK 251
Query: 170 FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFE 229
D+ + N LID Y KCG + A ++FE+ + ++N+VSW+++I+G+A +G EA+E F
Sbjct: 252 SDVMMMNSLIDMYGKCGRMDFAIQVFEE--MPQRNVVSWSSMITGYAANGNTLEALECFR 309
Query: 230 RMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERA 278
+M++ G++PN+ +G EEG +F M E + P + HYGC++D+L R
Sbjct: 310 QMREFGVRPNKITFVGVLSACVHGGLVEEGKAYFAMMKSEFNLEPGLSHYGCIVDLLSRD 369
Query: 279 GRLEQAEEVASGIPSQITNVVVW 301
G+L++A++V +P + NV+VW
Sbjct: 370 GQLKEAKKVVEEMPMK-PNVMVW 391
>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 723
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/287 (33%), Positives = 160/287 (55%), Gaps = 36/287 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T++ +++ C T + G ++H + G+ ++V +L MY G L+++ KLF
Sbjct: 248 NKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLF 307
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+LP R++VTW ++T GY+++ +EA+ LFRRM + +P ++T +V
Sbjct: 308 SDLPHRDVVTWTAMVT----------GYAQLGFHDEAINLFRRMQQ-QGIKPDKMTFTSV 356
Query: 143 L-----PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
L PA + G+ + QL+H G+N D+++ + L+ YAKCG + AS +F
Sbjct: 357 LTSCSSPAFLQEGKRIHQQLVHA-----GYN-LDVYLQSALVSMYAKCGSMDDASLVFNQ 410
Query: 198 TSVDRKNLVSWTTIISG-FAMHGMGKEAVENFERMQKVGLKPNR---------SWRIG-- 245
S +N+V+WT II+G A HG +EA+E F++M+K G+KP++ +G
Sbjct: 411 MS--ERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLV 468
Query: 246 EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
EEG K F M + + P ++HY C +D+L RAG LE+AE V +P
Sbjct: 469 EEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMP 515
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 137/290 (47%), Gaps = 28/290 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ L+ LG ++H + G + V T+L MY G + + +F
Sbjct: 147 DKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIF 206
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D LPE+N+VTW ++I GY++ + + AL L M E P++IT ++
Sbjct: 207 DRLPEKNVVTWTLLIA----------GYAQQGQVDVALELLETMQQAEVA-PNKITFASI 255
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + + + +H Y + G+ ++ V N LI Y KCG + A KLF D +
Sbjct: 256 LQGCTTPAALEHGKKVHRYIIQSGYGR-ELWVVNSLITMYCKCGGLEEARKLFSD--LPH 312
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKF 251
+++V+WT +++G+A G EA+ F RMQ+ G+KP++ S +EG +
Sbjct: 313 RDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRI 372
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
++V L D+ L+ + + G ++ A V + + + NVV W
Sbjct: 373 HQQLVHAGYNL-DVYLQSALVSMYAKCGSMDDASLVFNQMSER--NVVAW 419
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 142/309 (45%), Gaps = 51/309 (16%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
S + L++ C L G ++HA K G Q + Y+ L MY G L D+ ++FD
Sbjct: 47 SDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFD 106
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM--AACEYTEPSEITILA 141
+ +RN+V+ WT +I+ + N++ EA + M A C +P ++T ++
Sbjct: 107 SIRDRNIVS----------WTAMIEAFVAGNKNLEAFKCYETMKLAGC---KPDKVTFVS 153
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+L A ++ Q +H + G + V L+ YAKCG I A +F+ +
Sbjct: 154 LLNAFTNPELLQLGQKVHMEIVEAGLE-LEPRVGTSLVGMYAKCGDISKARVIFD--RLP 210
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEV 261
KN+V+WT +I+G+A G A+E E MQ+ + PN+ F +++ C
Sbjct: 211 EKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKI---------TFASILQGCTT 261
Query: 262 LPDIKH------------YG-------CLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
++H YG LI + + G LE+A ++ S +P + +VV W
Sbjct: 262 PAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHR--DVVTWT 319
Query: 303 ---TGFLRL 308
TG+ +L
Sbjct: 320 AMVTGYAQL 328
>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Glycine max]
Length = 566
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 162/312 (51%), Gaps = 37/312 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ T ++ C +L + + + + VY+ L DMY G + + +F
Sbjct: 177 DAVTMVKVVLACTSLGEWGVADAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVF 236
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
D++ RNLV+WN +I G ++ WT +I YS+ + EAL
Sbjct: 237 DQMQWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQRDVISWTNMITSYSQAGQFTEALR 296
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF+ M + +P EIT+ +VL A G + + H Y +K A DI+V N LID
Sbjct: 297 LFKEMMESK-VKPDEITVASVLSACAHTGSLDVGEAAHDYIQKYDVKA-DIYVGNALIDM 354
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
Y KCG + A ++F++ + +K+ VSWT+IISG A++G A++ F RM + ++P+
Sbjct: 355 YCKCGVVEKALEVFKE--MRKKDSVSWTSIISGLAVNGFADSALDYFSRMLREVVQPSHG 412
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+G ++GL++F+ M + + P++KHYGC++D+L R+G L++A E
Sbjct: 413 AFVGILLACAHAGLVDKGLEYFESMEKVYGLKPEMKHYGCVVDLLSRSGNLQRAFEFIKE 472
Query: 291 IPSQITNVVVWR 302
+P +VV+WR
Sbjct: 473 MPV-TPDVVIWR 483
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 134/275 (48%), Gaps = 28/275 (10%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L ++ TY FL + C + + G+ +HA K+GF+SH+YV+ AL +MY S G L + K
Sbjct: 74 LGNNLTYLFLFKACARVPDVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQK 133
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FDE+PER+LV+WN ++ GY + R E L +F M + +T++
Sbjct: 134 VFDEMPERDLVSWNSLVC----------GYGQCKRFREVLGVFEAMRVAG-VKGDAVTMV 182
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
V+ A GE + Y E+ D+++ N LID Y + G + A +F+ +
Sbjct: 183 KVVLACTSLGEWGVADAMVDYIEENNVE-IDVYLGNTLIDMYGRRGLVHLARGVFD--QM 239
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW--------RIGE--EGLK 250
+NLVSW +I G+ G A E F+ M + + SW + G+ E L+
Sbjct: 240 QWRNLVSWNAMIMGYGKAGNLVAARELFDAMSQ---RDVISWTNMITSYSQAGQFTEALR 296
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAE 285
F +M+E +V PD ++ G L+ E
Sbjct: 297 LFKEMMES-KVKPDEITVASVLSACAHTGSLDVGE 330
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 108/238 (45%), Gaps = 30/238 (12%)
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
+ LF ++ L WN++I G +S ++ NEA+ ++ M + + +
Sbjct: 30 AHNLFQQIHRPTLPFWNIMIRG----------WSVSDQPNEAIRMYNLMYR-QGLLGNNL 78
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
T L + A + +V IH K GF + ++VSN LI+ Y CG + A K+F++
Sbjct: 79 TYLFLFKACARVPDVSCGSTIHARVLKLGFESH-LYVSNALINMYGSCGHLGLAQKVFDE 137
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN---------RSWRIGEEG 248
+ ++LVSW +++ G+ +E + FE M+ G+K + +GE G
Sbjct: 138 --MPERDLVSWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWG 195
Query: 249 LKFFDKMV---EECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ D MV EE V D+ LID+ R G + A V + Q N+V W
Sbjct: 196 VA--DAMVDYIEENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQM--QWRNLVSWNA 249
>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 624
Score = 158 bits (399), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 105/318 (33%), Positives = 156/318 (49%), Gaps = 48/318 (15%)
Query: 12 IHSHS------PLPPLFDSFTYSFLIRTCVTLSYP-------NLGTQLHAVFSKVGFQSH 58
IH+HS P L L+ T TLS +LG LHA K+
Sbjct: 94 IHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPACRGLSLGRALHAYAFKLALSGD 153
Query: 59 VYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIIT----------------GLVK 102
YV TAL MY G + LFDE+P+ ++V+ ++T GL +
Sbjct: 154 SYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPR 213
Query: 103 -----WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQL 157
W +IDGY++ + NEAL LFRRM EP E+T++ VL A+ + G V + +
Sbjct: 214 KDFICWNAMIDGYTQHGKPNEALQLFRRMLRSS-AEPDEVTVVLVLSAVAQLGTVESGKW 272
Query: 158 IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAM 217
+H Y + ++ V+ L+D Y KCG + A +F + K++V W +I+G+AM
Sbjct: 273 LHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFH--GIGNKDIVVWNAMINGYAM 330
Query: 218 HGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIK 266
HG ++A+E F +++ GL P IG EEG FF M E + P I+
Sbjct: 331 HGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIE 390
Query: 267 HYGCLIDILERAGRLEQA 284
HYGC++D+L RAG +E+A
Sbjct: 391 HYGCMVDLLGRAGLIEEA 408
>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
Length = 616
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 154/312 (49%), Gaps = 38/312 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+++T+ FL++ C LS TQ+HA +K G+ +Y +L + Y G K + LF
Sbjct: 109 NAYTFPFLLKACSNLSAFQETTQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLF 168
Query: 83 DELPERNLVTWNVIITGLVK----------------------WTGIIDGYSRMNRSNEAL 120
D + E + V+WN +I G VK WT +I GY + + EAL
Sbjct: 169 DRIQEPDAVSWNSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEAL 228
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LF M P +++ + L A + G + + IH Y K D + LID
Sbjct: 229 QLFHEMQNSN-VPPDNVSLASALSACSQLGALEQGKWIHSYANKTR-TRIDSVLCCVLID 286
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
YAKCG + A +F++ K++ WT +ISG+A HG+G+EA+ F MQ +G+KPN
Sbjct: 287 MYAKCGEMEEALGVFKNMKT--KSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNA 344
Query: 241 ----------SWR-IGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
S+ + EEG F+ + + + P I+HYGC++D+L RAG L +A
Sbjct: 345 ITFTAVLTACSYTGLVEEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQ 404
Query: 290 GIPSQITNVVVW 301
+P + N V+W
Sbjct: 405 KMPLK-PNAVIW 415
>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Cucumis sativus]
Length = 679
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 156/303 (51%), Gaps = 34/303 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ F++++ V L +G +H + ++G Q +YV T+L +Y G + D+ K+F
Sbjct: 170 DYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVF 229
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
D + R++ +WN ++ G +V WT +I GYS+ + +AL+
Sbjct: 230 DNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALS 289
Query: 122 LFRRMAACEY-TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LF M + P+ +TI++VLPA + + + IH + G N+ + V L
Sbjct: 290 LFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNS-NASVLIALTA 348
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
YAKCG + A F+ + + KNL++W T+I+ +A +G G +AV F M + G++P+
Sbjct: 349 MYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDD 408
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
G + GLK+F+ M + P ++HY C+ D+L RAGRL +A ++
Sbjct: 409 ITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVG 468
Query: 290 GIP 292
+P
Sbjct: 469 EMP 471
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 114/273 (41%), Gaps = 55/273 (20%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
+ LQ + +P PP S+ F T L+ LG Q+HA G Q V
Sbjct: 51 ISATLQNLLQPLSAPGPPPILSYAPVFQFLT--GLNMLKLGHQVHAHMLLRGLQPTALVG 108
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
+ + Y S G + S +F+ + E + + +N +I Y+R + +A
Sbjct: 109 SKMVAFYASSGDIDSSVSVFNGIGEPSSLLFN----------SMIRAYARYGFAERTVAT 158
Query: 123 FRRMAACEYTE-----PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
+ M + +T P + L ++W + +HG + G FD++V+
Sbjct: 159 YFSMHSWGFTGDYFTFPFVLKSSVELLSVWMG------KCVHGLILRIGLQ-FDLYVATS 211
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDR-----------------------------KNLVSW 208
LI Y KCG I A K+F++ ++ +N+VSW
Sbjct: 212 LIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSW 271
Query: 209 TTIISGFAMHGMGKEAVENFERMQK--VGLKPN 239
TT+ISG++ G+ ++A+ F+ M K G++PN
Sbjct: 272 TTMISGYSQSGLAQQALSLFDEMVKEDSGVRPN 304
>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 145/272 (53%), Gaps = 25/272 (9%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
FT+ ++R+C +L P G Q+HA K +V TAL DMY L+D+ FD
Sbjct: 254 FTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDR 313
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
L R++ +W VII+ GY++ +++ +A+ FR+M E +P+E T+ + L
Sbjct: 314 LVNRDIFSWTVIIS----------GYAQTDQAEKAVKYFRQMQR-EGIKPNEYTLASCLS 362
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
+ N + +H K G DI V + L+D Y KCGC+ A +F+ + ++
Sbjct: 363 GCSHMATLENGRQLHAVAVKAGHFG-DIFVGSALVDLYGKCGCMEHAEAIFK--GLISRD 419
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFD 253
+VSW TIISG++ HG G++A+E F M G+ P+ + IG EEG K FD
Sbjct: 420 IVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFD 479
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAE 285
M + + P I+HY C++DIL RAG+ + +
Sbjct: 480 SMSKIYGINPSIEHYACMVDILGRAGKFNEVK 511
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 134/291 (46%), Gaps = 26/291 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT S L+ T + G +H K GF+S V+ L MY+ ++D +K+F
Sbjct: 151 NQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVF 210
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + +LV+WN +++ G+ +F +M E +P+ T ++V
Sbjct: 211 EAMTNPDLVSWNALLS----------GFYDSQTCGRGPRIFYQMLL-EGFKPNMFTFISV 259
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + + + +H + K + D V L+D YAK C+ A F D V+R
Sbjct: 260 LRSCSSLLDPEFGKQVHAHIIKNSSDDDDF-VGTALVDMYAKARCLEDAGVAF-DRLVNR 317
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR----SWRIGEEGLKFFDKMVEE 258
++ SWT IISG+A ++AV+ F +MQ+ G+KPN S G + + +
Sbjct: 318 -DIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQL 376
Query: 259 CEVLPDIKHYG------CLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
V H+G L+D+ + G +E AE + G+ S+ ++V W T
Sbjct: 377 HAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISR--DIVSWNT 425
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 89/163 (54%), Gaps = 14/163 (8%)
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
+ +LF +PE+N V+WN ++ +GY+++ + L LF +M CE T+ S+
Sbjct: 4 AERLFFGMPEKNGVSWNALL----------NGYAQLGDGKKVLKLFCKMKECE-TKFSKF 52
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
T+ VL G +R +++H + G D + L+D Y+KCG ++ A K+F
Sbjct: 53 TLSTVLKGCANTGSLREGKVLHALALRSGCE-IDEFLGCSLVDMYSKCGTVYDALKVF-- 109
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
T + ++V+W+ +I+G G G+EA E F M++ G +PN+
Sbjct: 110 TKIRNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQ 152
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 103/218 (47%), Gaps = 14/218 (6%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
F FT S +++ C G LHA+ + G + ++ +L DMY G + D+ K+
Sbjct: 49 FSKFTLSTVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKV 108
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F ++ ++V W+ +ITGL D + E L RR A P++ T+ +
Sbjct: 109 FTKIRNPDVVAWSAMITGL-------DQQGHGQEAAELFHLMRRKGA----RPNQFTLSS 157
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
++ G++R Q IHG K GF + D VSN LI Y K C+ +K+FE ++
Sbjct: 158 LVSTATNMGDLRYGQSIHGCICKYGFES-DNLVSNPLIMMYMKSRCVEDGNKVFE--AMT 214
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+LVSW ++SGF F +M G KPN
Sbjct: 215 NPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPN 252
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 104/222 (46%), Gaps = 33/222 (14%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ +T + + C ++ G QLHAV K G ++V +AL D+Y G ++ + +F
Sbjct: 353 NEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIF 412
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
L R++V+WN II+ GYS+ + +AL FR M + E P E T + V
Sbjct: 413 KGLISRDIVSWNTIIS----------GYSQHGQGEKALEAFRMMLS-EGIMPDEATFIGV 461
Query: 143 LPAIWKNGEVRNCQLIHGYGEKR--------GFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
L A G V G+KR G N H + C++D + G F+ K+
Sbjct: 462 LSACSFMGLVEE-------GKKRFDSMSKIYGINPSIEHYA-CMVDILGRAG-KFNEVKI 512
Query: 195 F-EDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQ 232
F E+ ++ +L+ W T++ +HG G++A + M+
Sbjct: 513 FIEEMNLTPYSLI-WETVLGACKLHGNVDFGEKAAKKLFEME 553
>gi|357128066|ref|XP_003565697.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Brachypodium distachyon]
Length = 564
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 155/298 (52%), Gaps = 33/298 (11%)
Query: 6 QLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTAL 65
QL Q I L P FT S + C +++ +G QLH + + F +++ V +L
Sbjct: 162 QLFQTMIQDGIELSP----FTCSIALHACASIANLCVGQQLHVLCLRKAFNANLTVANSL 217
Query: 66 GDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRR 125
DMY S L D+ +LFDE+PERNLVTWN +I W YS+ N AL L R
Sbjct: 218 IDMYCSCANLLDARRLFDEIPERNLVTWNTMIA----W------YSQCNHL-MALQLLRE 266
Query: 126 MAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC 185
M +P+ T+ ++ A +R Q +HG +R + D+ + N L+D Y+KC
Sbjct: 267 M----NLQPNCFTLTSITSACAGLASLRFGQQVHGAALRRNYGK-DLQMCNALVDMYSKC 321
Query: 186 GCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG 245
G I +A K+F +D K+ +SWT++I+G+ M+G E+++ F M G+ P+ +G
Sbjct: 322 GSIANAKKMF--NMMDYKDKLSWTSMITGYGMNGYANESIQLFTSMIHAGVHPDHVVFLG 379
Query: 246 -----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+EG FF M E + P+ + YGC+ ++L RAGRL +A ++ +P
Sbjct: 380 LICACNHGGLVDEGWNFFRSMTSEYNLQPNKEIYGCVTNLLARAGRLREAFDLIHRMP 437
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 83/169 (49%), Gaps = 16/169 (9%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT 132
G L+ + +FDE+P+R++V WT ++ GY+ + AL LFRRM A
Sbjct: 17 GALRHARAVFDEMPDRDVVA----------WTAMLSGYASNGCHSYALDLFRRMLAAG-V 65
Query: 133 EPSEITILAVLPAIWKNGEVRNCQ--LIHGYGEKRGFNAFDIHVSNCLIDTYAKC--GCI 188
P+E T+ +VL A C+ +H +RG + +V N LI+ YA C G
Sbjct: 66 GPNEFTLSSVLTACRGGAADGGCEPSSLHAVAVRRGVDHMP-YVVNALIEAYASCEEGVG 124
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
S+ D + SWT++++G++ G + ++ F+ M + G++
Sbjct: 125 VEESRKLFDALGSGRTAASWTSMVAGYSRWGQEQTGLQLFQTMIQDGIE 173
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 114/259 (44%), Gaps = 34/259 (13%)
Query: 44 TQLHAVFSKVGFQSHVYVNTALGDMYVSLG---FLKDSSKLFDELPERNLVTWNVIITGL 100
+ LHAV + G YV AL + Y S +++S KLFD L
Sbjct: 91 SSLHAVAVRRGVDHMPYVVNALIEAYASCEEGVGVEESRKLFDALGSGRTA--------- 141
Query: 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHG 160
WT ++ GYSR + L LF+ M + E S T L A + Q +H
Sbjct: 142 ASWTSMVAGYSRWGQEQTGLQLFQTMIQ-DGIELSPFTCSIALHACASIANLCVGQQLHV 200
Query: 161 YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAM--H 218
++ FNA ++ V+N LID Y C + A +LF++ + +NLV+W T+I+ ++ H
Sbjct: 201 LCLRKAFNA-NLTVANSLIDMYCSCANLLDARRLFDE--IPERNLVTWNTMIAWYSQCNH 257
Query: 219 GMGKEAVENFERMQKVGLKPN-------RSWRIGEEGLKFFDKMVEEC---EVLPDIKHY 268
M + ++++ L+PN S G L+F ++ D++
Sbjct: 258 LMA------LQLLREMNLQPNCFTLTSITSACAGLASLRFGQQVHGAALRRNYGKDLQMC 311
Query: 269 GCLIDILERAGRLEQAEEV 287
L+D+ + G + A+++
Sbjct: 312 NALVDMYSKCGSIANAKKM 330
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
LI + G + A +F++ + +++V+WT ++SG+A +G A++ F RM G+
Sbjct: 9 LIKSLCAGGALRHARAVFDE--MPDRDVVAWTAMLSGYASNGCHSYALDLFRRMLAAGVG 66
Query: 238 PN 239
PN
Sbjct: 67 PN 68
>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
Length = 611
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 157/292 (53%), Gaps = 27/292 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++T+ L++ C + G Q H V K G H YV L +MY G ++ + +F
Sbjct: 137 DTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMF 196
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + +V++N +IT V R + EAL LFR M A + +P+ +T+++V
Sbjct: 197 DRMDGECVVSYNAMITASV----------RSSLPGEALVLFREMQA-KGLKPTSVTLISV 245
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + + IH Y K ++ + V+ LID YAKCG + A +F+D ++
Sbjct: 246 LSACALLGALELGRWIHDYIRKMRLDSL-VKVNTALIDMYAKCGSLEDAIGVFQD--MES 302
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
++ +W+ ++ +A HG G+EA+ FE M+K G+KP+ +G EGL++
Sbjct: 303 RDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQY 362
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
FD M E ++ IKHYGC+ D+L R+G+LE+A + +P + T ++WRT
Sbjct: 363 FDSM-REYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPT-AILWRT 412
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 95/215 (44%), Gaps = 27/215 (12%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
S T ++ C L LG +H K+ S V VNTAL DMY G L+D+ +F
Sbjct: 239 SVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQ 298
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
++ R+ W+V++ GY R EA+++F M + +P ++T L VL
Sbjct: 299 DMESRDKQAWSVMMVAYAN-----HGYGR-----EAISMFEEMKK-QGMKPDDVTFLGVL 347
Query: 144 PAIWKNGEVRNC----QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
A +G V + YG G + C+ D A+ G + A K ++
Sbjct: 348 YACSHSGMVSEGLQYFDSMREYGIVSGIKHY-----GCVTDLLARSGQLERAYKFIDELP 402
Query: 200 VDRKNLVSWTTIISGFAMHG---MGKEAVENFERM 231
+ + + W T++S A HG MGK FER+
Sbjct: 403 I-KPTAILWRTLLSACAGHGDVDMGKRV---FERI 433
>gi|356528208|ref|XP_003532697.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 444
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 157/296 (53%), Gaps = 27/296 (9%)
Query: 16 SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL 75
SPL P D+FTY F+++ C S LG LH++ K GF+SH +V AL +MY +
Sbjct: 92 SPLNP--DNFTYPFVLKACARSSSLPLGGTLHSLTLKTGFRSHRHVGNALLNMYAECYAV 149
Query: 76 KDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS 135
+ +FDE+ +R++V+ W+ +I Y N +A +FR M E +P+
Sbjct: 150 MSARMVFDEMTDRDVVS----------WSSLIAAYVASNSPLDAFYVFREMGM-ENEQPN 198
Query: 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
+T++++L A K +R + IH Y G D+ + L + YAKCG I A +F
Sbjct: 199 SVTLVSLLSACTKTLNLRVGESIHSYVTSNGIE-MDVALGTALFEMYAKCGEIDKALLVF 257
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRI 244
S+ KNL S T +IS A HG K+ + F +M+ GL+ + +
Sbjct: 258 N--SMGDKNLQSCTIMISALADHGREKDVISLFTQMEDGGLRLDSLSFAVILSACSHMGL 315
Query: 245 GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
+EG +FD+MV + P ++HYGC++D+L RAG +++A ++ G+P + +V++
Sbjct: 316 VDEGKMYFDRMVRVYGIKPSVEHYGCMVDLLGRAGFIQEAYDIIKGMPMEPNDVIL 371
>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
Length = 671
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 157/292 (53%), Gaps = 27/292 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++T+ L++ C + G Q H V K G H YV L +MY G ++ + +F
Sbjct: 137 DTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMF 196
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + +V++N +IT V R + EAL LFR M A + +P+ +T+++V
Sbjct: 197 DRMDGECVVSYNAMITASV----------RSSLPGEALVLFREMQA-KGLKPTSVTLISV 245
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + + IH Y K ++ + V+ LID YAKCG + A +F+D ++
Sbjct: 246 LSACALLGALELGRWIHDYIRKMRLDSL-VKVNTALIDMYAKCGSLEDAIGVFQD--MES 302
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
++ +W+ ++ +A HG G+EA+ FE M+K G+KP+ +G EGL++
Sbjct: 303 RDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQY 362
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
FD M E ++ IKHYGC+ D+L R+G+LE+A + +P + T ++WRT
Sbjct: 363 FDSM-REYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPT-AILWRT 412
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 95/215 (44%), Gaps = 27/215 (12%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
S T ++ C L LG +H K+ S V VNTAL DMY G L+D+ +F
Sbjct: 239 SVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQ 298
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
++ R+ W+V++ GY R EA+++F M + +P ++T L VL
Sbjct: 299 DMESRDKQAWSVMMVAYAN-----HGYGR-----EAISMFEEMKK-QGMKPDDVTFLGVL 347
Query: 144 PAIWKNGEVRNC----QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
A +G V + YG G + C+ D A+ G + A K ++
Sbjct: 348 YACSHSGMVSEGLQYFDSMREYGIVSGIKHY-----GCVTDLLARSGQLERAYKFIDELP 402
Query: 200 VDRKNLVSWTTIISGFAMHG---MGKEAVENFERM 231
+ + + W T++S A HG MGK FER+
Sbjct: 403 I-KPTAILWRTLLSACAGHGDVDMGKRV---FERI 433
>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
Length = 611
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 157/292 (53%), Gaps = 27/292 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++T+ L++ C + G Q H V K G H YV L +MY G ++ + +F
Sbjct: 137 DTYTFVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMF 196
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + +V++N +IT V R + EAL LFR M A + +P+ +T+++V
Sbjct: 197 DRMDGECVVSYNAMITASV----------RSSLPGEALVLFREMQA-KGLKPTSVTLISV 245
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + + IH Y K ++ + V+ LID YAKCG + A +F+D ++
Sbjct: 246 LSACALLGALELGRWIHDYIRKMRLDSL-VKVNTALIDMYAKCGSLEDAIGVFQD--MES 302
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
++ +W+ ++ +A HG G+EA+ FE M+K G+KP+ +G EGL++
Sbjct: 303 RDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQY 362
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
FD M E ++ IKHYGC+ D+L R+G+LE+A + +P + T ++WRT
Sbjct: 363 FDSM-REYGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPT-AILWRT 412
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 95/215 (44%), Gaps = 27/215 (12%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
S T ++ C L LG +H K+ S V VNTAL DMY G L+D+ +F
Sbjct: 239 SVTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQ 298
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
++ R+ W+V++ GY R EA+++F M + +P ++T L VL
Sbjct: 299 DMESRDKQAWSVMMVAYAN-----HGYGR-----EAISMFEEMKK-QGMKPDDVTFLGVL 347
Query: 144 PAIWKNGEVRNC----QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
A +G V + YG G + C+ D A+ G + A K ++
Sbjct: 348 YACSHSGMVSEGLQYFDSMREYGIVSGIKHY-----GCVTDLLARSGQLERAYKFIDELP 402
Query: 200 VDRKNLVSWTTIISGFAMHG---MGKEAVENFERM 231
+ + + W T++S A HG MGK FER+
Sbjct: 403 I-KPTAILWRTLLSACAGHGDVDMGKRV---FERI 433
>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 642
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 156/303 (51%), Gaps = 34/303 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ F++++ V L +G +H + ++G Q +YV T+L +Y G + D+ K+F
Sbjct: 133 DYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVF 192
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
D + R++ +WN ++ G +V WT +I GYS+ + +AL+
Sbjct: 193 DNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALS 252
Query: 122 LFRRMAACEY-TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LF M + P+ +TI++VLPA + + + IH + G N+ + V L
Sbjct: 253 LFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNS-NASVLIALTA 311
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
YAKCG + A F+ + + KNL++W T+I+ +A +G G +AV F M + G++P+
Sbjct: 312 MYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDD 371
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
G + GLK+F+ M + P ++HY C+ D+L RAGRL +A ++
Sbjct: 372 ITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVG 431
Query: 290 GIP 292
+P
Sbjct: 432 EMP 434
>gi|297849216|ref|XP_002892489.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338331|gb|EFH68748.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1014
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 157/312 (50%), Gaps = 37/312 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +TY+ L+++C +LS G +H + GF V + ++Y S G + D+ K+F
Sbjct: 623 DEYTYAPLLKSCSSLSDLRFGKCVHGEVIRTGFHRLGKVRIGVVELYTSGGRMGDAQKVF 682
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
DE+PERN+V WN+++ G +V W +I S+ R EAL
Sbjct: 683 DEMPERNVVVWNLMVRGFCDSGDVQRGLSFFKQMSERSIVSWNSMISSLSKCGRDREALE 742
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M + +P E T++ +LP G + + IH E G I V N L+D
Sbjct: 743 LFCEMIDQGF-DPDEATVVTMLPISASLGVLDTGKWIHSTAESNGLIKDFITVGNALVDF 801
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-LKPNR 240
Y K G + +A+ +F + R+N+VSW T+ISG A++G G+ ++ F+ M + G + PN
Sbjct: 802 YCKSGDLEAATAIFR--KMQRRNVVSWNTMISGSAVNGKGESGIDLFDAMIEEGKVAPNE 859
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
+ +G E G + F M+E ++ P +HYG ++D++ R+GR+ +A E
Sbjct: 860 ATFLGVLACCSYTGQVERGEELFGLMMERFKLEPRTEHYGAMVDLMSRSGRIREAFEFLR 919
Query: 290 GIPSQITNVVVW 301
+P N +W
Sbjct: 920 NMPVN-ANAAMW 930
>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 157 bits (398), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 92/287 (32%), Positives = 158/287 (55%), Gaps = 38/287 (13%)
Query: 49 VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG--------- 99
+F ++ + V NT L D YV G + + LF+++PERN+V+W+ +++G
Sbjct: 211 LFDEMAERDAVSWNTIL-DGYVKAGEMSQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEM 269
Query: 100 ------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIW 147
LV WT II G++ + EA L+ +M A +P + T++++L A
Sbjct: 270 ARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGL-KPDDGTLISILAACA 328
Query: 148 KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
++G + + +H +K ++VSN L+D YAKCG + A +F + S+ ++LVS
Sbjct: 329 ESGLLVLGKKVHASIKKIRIKC-SVNVSNALVDMYAKCGRVDKALSIFNEMSM--RDLVS 385
Query: 208 WTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMV 256
W ++ G AMHG G++A++ F +MQ+ G KP++ I ++GL +F+ M
Sbjct: 386 WNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILCACTHAGFVDQGLSYFNSME 445
Query: 257 EECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ ++P I+HYGC+ID+L R GRLE+A + +P + N V+W T
Sbjct: 446 RDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPME-PNDVIWGT 491
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 92/339 (27%), Positives = 146/339 (43%), Gaps = 60/339 (17%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL--KDSSK 80
D+FTY FL++ C + +H K GF ++V +L D Y G L + K
Sbjct: 120 DNFTYPFLLKACNGKGWLPTVQMIHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMK 179
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
LF E+ E++LV+WN +I GLVK + A LF MA E ++
Sbjct: 180 LFMEMGEKDLVSWNSMIGGLVKAGDL----------GRARKLFDEMA-----ERDAVSWN 224
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD------IHVSNCLIDTYAKCGCIFSASKL 194
+L K GE+ + FN F+ + + ++ Y K G + A L
Sbjct: 225 TILDGYVKAGEM-----------SQAFNLFEKMPERNVVSWSTMVSGYCKTGDMEMARML 273
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI------GEEG 248
F+ KNLV+WT IISGFA G+ KEA + +M+ GLKP+ I E G
Sbjct: 274 FDKMPF--KNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAESG 331
Query: 249 LKFFDKMV----EECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTG 304
L K V ++ + + L+D+ + GR+++A + + + + ++V W
Sbjct: 332 LLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEM--SMRDLVSWNCM 389
Query: 305 FLRLLINSYFFSPITLNSQRLFFFPAALYALTQILGFKP 343
L ++ + I L++ Q GFKP
Sbjct: 390 LQGLAMHGHGEKAIQ------------LFSKMQQEGFKP 416
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 12/209 (5%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ C LG ++HA K+ + V V+ AL DMY G + + +F
Sbjct: 316 DDGTLISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIF 375
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+ R+LV+WN ++ GL + G+ +A+ LF +M E +P ++T++A+
Sbjct: 376 NEMSMRDLVSWNCMLQGLA-----MHGHGE-----KAIQLFSKMQQ-EGFKPDKVTLIAI 424
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G V E+ I C+ID + G + A +L + ++
Sbjct: 425 LCACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEP 484
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERM 231
+++ W T++ +H A + +R+
Sbjct: 485 NDVI-WGTLLGACRVHNAVPLAEKVLDRL 512
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 113/266 (42%), Gaps = 57/266 (21%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
++HA K + +YV L + + + +F+++ + N+ +N +I V+ +
Sbjct: 41 EVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNS 100
Query: 105 GIIDGYSRMNRSNEALALFRRMA-----ACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
+S +A A F M A +T P +L A G + Q+IH
Sbjct: 101 ----------QSLKAFATFFDMQKNGLFADNFTYP------FLLKACNGKGWLPTVQMIH 144
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGC--IFSASKLFEDTSVDRKNLVSWTTIISGFAM 217
+ EK GF D+ V N LID+Y+KCG + A KLF + K+LVSW ++I G
Sbjct: 145 CHVEKYGFFG-DLFVPNSLIDSYSKCGLLGVNYAMKLF--MEMGEKDLVSWNSMIGGLVK 201
Query: 218 HGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILER 277
G + R +K+ FD+M E D + ++D +
Sbjct: 202 AG-------DLGRARKL-----------------FDEMAER-----DAVSWNTILDGYVK 232
Query: 278 AGRLEQAEEVASGIPSQITNVVVWRT 303
AG + QA + +P + NVV W T
Sbjct: 233 AGEMSQAFNLFEKMPER--NVVSWST 256
>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
Length = 635
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 166/344 (48%), Gaps = 67/344 (19%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DSF+++F+I+ G Q+H K G +SH++V T L MY G ++ + K+F
Sbjct: 97 DSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVF 156
Query: 83 DELPERNLVTWNVIITGL------------------------------------------ 100
DE+ + NLV WN +IT
Sbjct: 157 DEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKR 216
Query: 101 ----------VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
V W+ +I G + NE+ FR + + P+E+++ VL A ++G
Sbjct: 217 IFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMS-PNEVSLTGVLSACSQSG 275
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
+++HG+ EK G+ ++ + V+N LID Y++CG + A +FE +++ +VSWT+
Sbjct: 276 SFEFGKILHGFVEKAGY-SWIVSVNNALIDMYSRCGNVPMARLVFEGMQ-EKRCIVSWTS 333
Query: 211 IISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEEC 259
+I+G AMHG G+EAV F M G+ P+ I EEG +F +M
Sbjct: 334 MIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVY 393
Query: 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ P+I+HYGC++D+ R+G+L++A + +P T +VWRT
Sbjct: 394 HIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPT-AIVWRT 436
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 102/241 (42%), Gaps = 21/241 (8%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
FL +++LQ+ + + P + + + ++ C G LH K G+ V
Sbjct: 246 FLYFRELQR------AGMSP--NEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVS 297
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
VN AL DMY G + + +F+ + E+ + V WT +I G + + EA+
Sbjct: 298 VNNALIDMYSRCGNVPMARLVFEGMQEKRCI---------VSWTSMIAGLAMHGQGEEAV 348
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LF M A T P I+ +++L A G + + ++ +I C++D
Sbjct: 349 RLFNEMTAYGVT-PDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVD 407
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
Y + G + A + +V W T++ + HG + A + +R+ + L PN
Sbjct: 408 LYGRSGKLQKAYDFICQMPIPPTAIV-WRTLLGACSSHGNIELAEQVKQRLNE--LDPNN 464
Query: 241 S 241
S
Sbjct: 465 S 465
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 109/274 (39%), Gaps = 48/274 (17%)
Query: 44 TQLHAVFSKVGFQSHVYVNTALGDMYVSLGF---LKDSSKLFDELPERNLVTWNVIITGL 100
TQ+H +F K G + Y L ++ ++ L + +L PE + +N ++ G
Sbjct: 14 TQIHGLFIKYGVDTDSYFTGKL-ILHCAISISDALPYARRLLLCFPEPDAFMFNTLVRG- 71
Query: 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHG 160
YS + + ++A+F M + P + V+ A+ +R +H
Sbjct: 72 ---------YSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHC 122
Query: 161 YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGM 220
K G + + V LI Y CGC+ A K+F++ + + NLV+W +I+
Sbjct: 123 QALKHGLESH-LFVGTTLIGMYGGCGCVEFARKVFDE--MHQPNLVAWNAVITACFRGND 179
Query: 221 GKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGR 280
A E F++M ++ + SW + G +AG
Sbjct: 180 VAGAREIFDKML---VRNHTSWNVMLAGYI--------------------------KAGE 210
Query: 281 LEQAEEVASGIPSQITNVVVWRTGFLRLLINSYF 314
LE A+ + S +P + + V W T + + N F
Sbjct: 211 LESAKRIFSEMPHR--DDVSWSTMIVGIAHNGSF 242
>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 643
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 166/344 (48%), Gaps = 67/344 (19%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DSF+++F+I+ G Q+H K G +SH++V T L MY G ++ + K+F
Sbjct: 105 DSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVF 164
Query: 83 DELPERNLVTWNVIITGL------------------------------------------ 100
DE+ + NLV WN +IT
Sbjct: 165 DEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKR 224
Query: 101 ----------VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
V W+ +I G + NE+ FR + + P+E+++ VL A ++G
Sbjct: 225 IFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMS-PNEVSLTGVLSACSQSG 283
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
+++HG+ EK G+ ++ + V+N LID Y++CG + A +FE +++ +VSWT+
Sbjct: 284 SFEFGKILHGFVEKAGY-SWIVSVNNALIDMYSRCGNVPMARLVFEGMQ-EKRCIVSWTS 341
Query: 211 IISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEEC 259
+I+G AMHG G+EAV F M G+ P+ I EEG +F +M
Sbjct: 342 MIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVY 401
Query: 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ P+I+HYGC++D+ R+G+L++A + +P T +VWRT
Sbjct: 402 HIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPT-AIVWRT 444
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 102/241 (42%), Gaps = 21/241 (8%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
FL +++LQ+ + + P + + + ++ C G LH K G+ V
Sbjct: 254 FLYFRELQR------AGMSP--NEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVS 305
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
VN AL DMY G + + +F+ + E+ + V WT +I G + + EA+
Sbjct: 306 VNNALIDMYSRCGNVPMARLVFEGMQEKRCI---------VSWTSMIAGLAMHGQGEEAV 356
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LF M A T P I+ +++L A G + + ++ +I C++D
Sbjct: 357 RLFNEMTAYGVT-PDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVD 415
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
Y + G + A + +V W T++ + HG + A + +R+ + L PN
Sbjct: 416 LYGRSGKLQKAYDFICQMPIPPTAIV-WRTLLGACSSHGNIELAEQVKQRLNE--LDPNN 472
Query: 241 S 241
S
Sbjct: 473 S 473
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 52/294 (17%)
Query: 28 SFLIRTCVTL--SYPNLG--TQLHAVFSKVGFQSHVYVNTALGDMYVSLGF---LKDSSK 80
+ I C++L S NL TQ+H +F K G + Y L ++ ++ L + +
Sbjct: 2 TIAIHHCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKL-ILHCAISISDALPYARR 60
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
L PE + +N ++ G YS + + ++A+F M + P +
Sbjct: 61 LLLCFPEPDAFMFNTLVRG----------YSESDEPHNSVAVFVEMMRKGFVFPDSFSFA 110
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
V+ A+ +R +H K G + + V LI Y CGC+ A K+F++ +
Sbjct: 111 FVIKAVENFRSLRTGFQMHCQALKHGLESH-LFVGTTLIGMYGGCGCVEFARKVFDE--M 167
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECE 260
+ NLV+W +I+ A E F++M ++ + SW + G
Sbjct: 168 HQPNLVAWNAVITACFRGNDVAGAREIFDKML---VRNHTSWNVMLAGYI---------- 214
Query: 261 VLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYF 314
+AG LE A+ + S +P + + V W T + + N F
Sbjct: 215 ----------------KAGELESAKRIFSEMPHR--DDVSWSTMIVGIAHNGSF 250
>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
Length = 694
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 151/293 (51%), Gaps = 26/293 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD T ++ C + LG + + G + + TAL DMY G + + +L
Sbjct: 219 FDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRL 278
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + R++V W+ +I+G Y++ ++ EAL LF M EP+++T+++
Sbjct: 279 FDGMQSRDVVAWSAMISG----------YTQADQCREALGLFSEMQLAR-VEPNDVTMVS 327
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL A G + + +H Y ++ + I + L+D YAKCGCI A + FE V
Sbjct: 328 VLSACAVLGALETGKWVHSYVRRKRLSLTTI-LGTALVDFYAKCGCIDDAVEAFESMPV- 385
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
KN +WT +I G A +G G+EA+E F M++ G++P IG EEG +
Sbjct: 386 -KNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRR 444
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
FD M + + P ++HYGC++D+L RAG +++A + +P + N V+WR
Sbjct: 445 HFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIE-PNAVIWRA 496
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 112/231 (48%), Gaps = 22/231 (9%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
+H+ S P D T + +++C + ++G + A K G + +V ++L MY S
Sbjct: 110 LHAASACPA--DQHTAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYAS 167
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITGLVK---WTGIIDGYSRMNRSNEALALFRRMAA 128
G + + +FD E +V WN I+ +K W +++ + M A
Sbjct: 168 CGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAF-------- 219
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
E+T+++V+ A + G+ + + + G+ ++ G A + + L+D YAKCG I
Sbjct: 220 ------DEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGL-ARNPKLVTALMDMYAKCGEI 272
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
A +LF+ + +++V+W+ +ISG+ +EA+ F MQ ++PN
Sbjct: 273 GKARRLFD--GMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPN 321
>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 622
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 157/311 (50%), Gaps = 37/311 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+++T+ FL++ C ++S Q+HA K+GF S +Y +L ++Y G +K + LF
Sbjct: 117 NAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLF 176
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
D++ +R+ V+WN +I G ++ WT +I G + EAL
Sbjct: 177 DQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALN 236
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF RM + + +++ L A G + + IH Y +K D + LID
Sbjct: 237 LFHRMQTAG-IKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIE-IDPILGCVLIDM 294
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG + A ++F ++ K + WT +ISG+A+HG G+EA+E F +MQ G++PN+
Sbjct: 295 YAKCGDLEEAIEVFR--KMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQM 352
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
G E F+ M P I+HYGC++D+L RAG L++AEE+
Sbjct: 353 TFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIEN 412
Query: 291 IPSQITNVVVW 301
+P + N +W
Sbjct: 413 MPVK-PNAAIW 422
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 113/272 (41%), Gaps = 61/272 (22%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT 132
G L + +FD + N WN +I GYS EAL L+ M ++
Sbjct: 66 GSLAYARTVFDRIFRPNTFMWNTMIR----------GYSNSKEPEEALLLYHHMLY--HS 113
Query: 133 EP-SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191
P + T +L A + Q IH + K GF + +I+ +N L++ Y+K G I SA
Sbjct: 114 VPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFGS-EIYTTNSLLNVYSKSGDIKSA 172
Query: 192 SKLFE----------DTSVD-------------------RKNLVSWTTIISGFAMHGMGK 222
LF+ ++ +D +N++SWT++ISG G K
Sbjct: 173 RLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPK 232
Query: 223 EAVENFERMQKVGLKPNRSWRIGE----EGLKFFDK--------MVEECEVLPDIKHYGC 270
EA+ F RMQ G+K + + L D+ E E+ P + GC
Sbjct: 233 EALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPIL---GC 289
Query: 271 -LIDILERAGRLEQAEEVASGIPSQITNVVVW 301
LID+ + G LE+A EV + + V VW
Sbjct: 290 VLIDMYAKCGDLEEAIEVFRKMEEK--GVSVW 319
>gi|147806113|emb|CAN65480.1| hypothetical protein VITISV_030746 [Vitis vinifera]
Length = 686
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 164/371 (44%), Gaps = 97/371 (26%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS---- 78
+ FT+ ++++C ++ G Q+H K GF+ + +V T L DMY + G + D+
Sbjct: 198 NCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIF 257
Query: 79 ---------------------------SKLFDELPERNLVTWNVIITGLVK--------- 102
+LFD PER++V WN++++G ++
Sbjct: 258 CEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARK 317
Query: 103 -------------------------------------------WTGIIDGYSRMNRSNEA 119
W +I GY+ E
Sbjct: 318 LFXEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEV 377
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
L F+RM + P++ T++ VL A + G + + +H Y E G +++V N L+
Sbjct: 378 LGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKG-NVYVGNALM 436
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D YAKCG I +A +F +D K+L+SW T+I G AMH G +A+ F +M+ G KP+
Sbjct: 437 DMYAKCGIIENAISVFR--GMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPD 494
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
IG E+G +F M ++ ++P I+HYGC++D+L RAGRLEQA
Sbjct: 495 GITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAXAFV 554
Query: 289 SGIPSQITNVV 299
+P + V+
Sbjct: 555 RKMPVEADGVI 565
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 126/296 (42%), Gaps = 39/296 (13%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKV---GFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE 87
+R+C T Q+H + +++ GFQ + Y+ L + +L + + +LFD++P+
Sbjct: 108 MRSCKT------SKQVHQIQAQIIANGFQYNEYITPKLVTICATLKRMTYARQLFDQIPD 161
Query: 88 RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIW 147
N+ WN + GY++ E + LF +M + P+ T VL +
Sbjct: 162 PNIALWN----------SMFRGYAQSESYREVVFLFFQMKGMD-IRPNCFTFPVVLKSCG 210
Query: 148 KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
K + + +H + K GF + V LID Y+ G + A K+F + +N+V+
Sbjct: 211 KINALIEGEQVHCFLIKCGFRG-NPFVGTTLIDMYSAGGTVGDAYKIF--CEMFERNVVA 267
Query: 208 WTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS---WRIGEEGLKFFDKMVEECEV--- 261
WT++I+G+ + A F+ L P R W I G MVE ++
Sbjct: 268 WTSMINGYILSADLVSARRLFD------LAPERDVVLWNIMVSGYIEGGDMVEARKLFXE 321
Query: 262 LP--DIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFF 315
+P D+ + ++ G +E E + +P + N+ W N FF
Sbjct: 322 MPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPER--NIFSWNALIGGYAHNGLFF 375
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 87/212 (41%), Gaps = 36/212 (16%)
Query: 14 SHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG 73
S S +PP + T ++ C L +LG +H G + +VYV AL DMY G
Sbjct: 386 SESDVPP--NDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCG 443
Query: 74 FLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE 133
++++ +F + ++L++WN +I GL + +R +AL LF +M +
Sbjct: 444 IIENAISVFRGMDTKDLISWNTLIGGL----------AMHSRGADALNLFFQMKNAG-QK 492
Query: 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF-----------DIHVSNCLIDTY 182
P IT + +L A G V + GF F I C++D
Sbjct: 493 PDGITFIGILCACTHMGLVED-----------GFAYFQSMADDYLIMPQIEHYGCMVDML 541
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISG 214
A+ G + A V+ ++ W ++
Sbjct: 542 ARAGRLEQAXAFVRKMPVEADGVI-WAGLLGA 572
>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
Length = 654
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 95/304 (31%), Positives = 158/304 (51%), Gaps = 39/304 (12%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVSLGFLKDSSKLF 82
SFT++ L + C LG Q+H VG F ++V ++ DMY+ GFL+ K+F
Sbjct: 146 SFTFTALFKACGAKMDVGLGRQIHGQTILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVF 205
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
DE+P R++++W +I+ VK WT ++ G+++ + EA+
Sbjct: 206 DEMPNRDVISWTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQNAKPREAIM 265
Query: 122 LFRRMAACEY-TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNA-FDIHVSNCLI 179
F +M E+ E EIT++ V+ A + G + I EK F + V + LI
Sbjct: 266 FFEKMQ--EFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSVVVGSALI 323
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D Y+KCG + A ++F+ + +N+ S++++I GFAMHG +A++ F+ M K +KPN
Sbjct: 324 DMYSKCGSVGDAYRVFQ--GMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKTEIKPN 381
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
R IG E+G + F+ M + + P HY C++D+L RAGRL++A E+
Sbjct: 382 RVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQEAHELV 441
Query: 289 SGIP 292
+P
Sbjct: 442 KTMP 445
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/265 (24%), Positives = 106/265 (40%), Gaps = 51/265 (19%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL--FDELPERNLVTWNVIITGLVK 102
Q+HA G YV L L D L F+++ N +N +I G
Sbjct: 64 QVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNYPNPFLYNALIRGY-- 121
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
+I+ R+ S E +L R+ E P T A+ A +V + IHG
Sbjct: 122 ---LIE--ERLKESTEFYSLMRK----EGVVPVSFTFTALFKACGAKMDVGLGRQIHGQT 172
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT------------------------ 198
G D+HV N +ID Y KCG + K+F++
Sbjct: 173 ILVGGFGEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESA 232
Query: 199 -----SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFD 253
+ K++V+WT ++SGFA + +EA+ FE+MQ+ G++ + IG
Sbjct: 233 GELFDGLPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIG-------- 284
Query: 254 KMVEECEVLPDIKHYGCLIDILERA 278
++ C L K+ + D+ E++
Sbjct: 285 -VISACAQLGAAKYADWIRDVAEKS 308
>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Vitis vinifera]
Length = 590
Score = 157 bits (397), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 94/288 (32%), Positives = 152/288 (52%), Gaps = 27/288 (9%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T+ ++ C + Y ++G +H + K F + V AL DMYV L ++ KLFDEL
Sbjct: 205 TFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDEL 264
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
P+R++V+W II+GLV+ + ++L LF M EP I + +VL A
Sbjct: 265 PDRDIVSWTSIISGLVQ----------CKQPKDSLELFYDMQI-SGVEPDRIILTSVLSA 313
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
G + + + Y E++G +DIH+ L+D YAKCGCI A +F + +N+
Sbjct: 314 CASLGALDYGRWVQEYIERQGIE-WDIHIGTALVDMYAKCGCIEMALHIF--NGIPNRNI 370
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDK 254
+W ++ G AMHG G EA+++FE M G++PN + EG +F +
Sbjct: 371 FTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQ 430
Query: 255 MVEE-CEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
M+ + P ++HYGC+ID+L RAG L++A + +P +V++W
Sbjct: 431 MISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLP-PDVLIW 477
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 144/292 (49%), Gaps = 31/292 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +T+ +++ C G Q+H V K+GF +YV +L Y G + ++F
Sbjct: 104 DMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVF 163
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ R++V+ WTG+I GY R +EA+ LF +M P+ T ++V
Sbjct: 164 DEMLVRDVVS----------WTGLISGYVRTGLFDEAINLFLKMDVV----PNVATFVSV 209
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + G + + +HG KR F + V N L+D Y KC C+ A KLF++ +
Sbjct: 210 LVACGRMGYLSMGKGVHGLVYKRAF-GIGLVVGNALVDMYVKCECLCEARKLFDE--LPD 266
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKF 251
+++VSWT+IISG K+++E F MQ G++P+R S + G ++
Sbjct: 267 RDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYG-RW 325
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ +E + DI L+D+ + G +E A + +GIP++ N+ W
Sbjct: 326 VQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNR--NIFTWNA 375
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 86/198 (43%), Gaps = 13/198 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D + ++ C +L + G + + G + +++ TAL DMY G ++ + +F
Sbjct: 303 DRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIF 362
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ +P RN+ TWN ++ GL + +EAL F M P+E+T LA+
Sbjct: 363 NGIPNRNIFTWNALLGGL----------AMHGHGHEALKHFELMIGAG-IRPNEVTFLAI 411
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFN-AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A +G V + + FN + + C+ID + G + A K + +
Sbjct: 412 LTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLP 471
Query: 202 RKNLVSWTTIISGFAMHG 219
L+ W ++S +G
Sbjct: 472 PDVLI-WGALLSACKANG 488
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 69/142 (48%), Gaps = 7/142 (4%)
Query: 98 TGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQL 157
G + + +I Y+ A ++ R+ + P T VL A K V+ +
Sbjct: 68 VGTLPYNTLIAAYASSCTPKAAFLVYGRIVGNGFV-PDMYTFPVVLKACTKFLGVQEGEQ 126
Query: 158 IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAM 217
+HG K GF D++V N L+ Y+ CG A ++F++ V +++VSWT +ISG+
Sbjct: 127 VHGVAVKMGFLC-DLYVQNSLLHFYSVCGKWGGAGRVFDEMLV--RDVVSWTGLISGYVR 183
Query: 218 HGMGKEAVENFERMQKVGLKPN 239
G+ EA+ F +M V PN
Sbjct: 184 TGLFDEAINLFLKMDVV---PN 202
>gi|255540011|ref|XP_002511070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550185|gb|EEF51672.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 551
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 106/321 (33%), Positives = 165/321 (51%), Gaps = 40/321 (12%)
Query: 18 LPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD 77
+PP F S Y F ++ C L +L LH+ K GF S +YV +L +Y L
Sbjct: 133 VPPDFHS--YPFALKACAHLRVLSLAQCLHSQVFKFGFVSDLYVINSLIHVYSLFDCLNY 190
Query: 78 SSKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRS 116
+ ++FDE +R++V++N ++ G VK W +I GY++ +
Sbjct: 191 ACQVFDESSDRDVVSYNALVDGFVKAGEFVKAREIFDLMPMRDSVSWGSLIAGYAQGSYC 250
Query: 117 NEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN 176
NEA+ LF M + EP I +++ L A + GE+ + IH Y +K A D +S
Sbjct: 251 NEAIGLFDLMMGLK-LEPDNIALVSALSACAQLGELEKGKQIHDYIKKNRIQA-DSFLST 308
Query: 177 CLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
L+D YAK GCI +A K+FE S D K+L++W ++ G AMHG + F RM + G+
Sbjct: 309 GLVDFYAKSGCIDTAIKVFE-LSPD-KSLITWNAMLIGIAMHGNSHLLLNYFSRMMEAGI 366
Query: 237 KPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAE 285
KP+ +G +E K FD+M V ++KHYGC+ D+L RAG +++A
Sbjct: 367 KPDGISFLGVLVGCSHGGLVDEAKKLFDEMESIYGVRRELKHYGCMADLLARAGLIKEAV 426
Query: 286 EVASGIPSQITNVVVWRTGFL 306
E+ G+P ++ VW +G L
Sbjct: 427 ELTKGLPMG-GDIFVW-SGLL 445
>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Glycine max]
Length = 1227
Score = 157 bits (397), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 154/290 (53%), Gaps = 27/290 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D ++ + ++ C + + G +H K + V+ AL DMY G ++++ +F
Sbjct: 754 DVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVF 813
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++P +++V+WN +I GYS+ + NEAL LF M + + P IT+ +
Sbjct: 814 SQIPVKDIVSWNTMI----------GGYSKNSLPNEALKLFAEMQ--KESRPDGITMACL 861
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LPA + + IHG + G+++ ++HV+N LID Y KCG + A LF+ +
Sbjct: 862 LPACGSLAALEIGRGIHGCILRNGYSS-ELHVANALIDMYVKCGSLVHARLLFD--MIPE 918
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKF 251
K+L++WT +ISG MHG+G EA+ F++M+ G+KP+ + EG F
Sbjct: 919 KDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGF 978
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F+ M+ EC + P ++HY C++D+L R G L +A + +P + + +W
Sbjct: 979 FNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIK-PDATIW 1027
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 160/334 (47%), Gaps = 39/334 (11%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
++K++Q++ I +S+T+S +++ TL ++H K+GF S+ V
Sbjct: 540 LFKKMQKLGITG--------NSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVV 591
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
+L Y G + + KLFDEL +R++V+WN +I+G V ++G+ S+ AL
Sbjct: 592 NSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCV-----MNGF-----SHSALEF 641
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
F +M T++ + A G + + +HG G K F+ ++ +N L+D Y
Sbjct: 642 FVQMLILR-VGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSR-EVMFNNTLLDMY 699
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN--- 239
+KCG + A + FE + +K +VSWT++I+ + G+ +A+ F M+ G+ P+
Sbjct: 700 SKCGNLNDAIQAFE--KMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYS 757
Query: 240 -----RSWRIGEEGLKFFD--KMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+ G K D + + + + L+D+ + G +E+A V S IP
Sbjct: 758 MTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIP 817
Query: 293 SQITNVVVWRTGFLRLLINSYFFSPITLNSQRLF 326
+ ++V W T +I Y + + + +LF
Sbjct: 818 --VKDIVSWNT-----MIGGYSKNSLPNEALKLF 844
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 104/211 (49%), Gaps = 15/211 (7%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D YS +++ C G +H+V S G + L MYVS G L++ ++
Sbjct: 449 LDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRI 508
Query: 82 FDELPERNLV-TWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
FD + N V WN++++ Y+++ E++ LF++M T S T
Sbjct: 509 FDHILSDNKVFLWNLMMS----------EYAKIGDYRESIYLFKKMQKLGITGNS-YTFS 557
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+L G V C+ IHG K GF +++ V N LI TY K G + SA KLF++ +
Sbjct: 558 CILKCFATLGRVGECKRIHGCVYKLGFGSYNT-VVNSLIATYFKSGEVDSAHKLFDE--L 614
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
+++VSW ++ISG M+G A+E F +M
Sbjct: 615 GDRDVVSWNSMISGCVMNGFSHSALEFFVQM 645
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 94/204 (46%), Gaps = 28/204 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + L+ C +L+ +G +H + G+ S ++V AL DMYV G L + LF
Sbjct: 854 DGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALIDMYVKCGSLVHARLLF 913
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +PE++L+TW V+I+G NEA+A F++M +P EIT ++
Sbjct: 914 DMIPEKDLITWTVMISGC----------GMHGLGNEAIATFQKMRIAG-IKPDEITFTSI 962
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAF--------DIHVSNCLIDTYAKCGCIFSASKL 194
L A +G L G+G FN+ + C++D A+ G + A L
Sbjct: 963 LYACSHSG-----LLNEGWG---FFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNL 1014
Query: 195 FEDTSVDRKNLVSWTTIISGFAMH 218
E + + + W ++ G +H
Sbjct: 1015 IETMPI-KPDATIWGALLCGCRIH 1037
>gi|357487459|ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 525
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 160/320 (50%), Gaps = 41/320 (12%)
Query: 1 FLV---YKQLQQIYIHS-HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQ 56
FLV +K Q+++ S L P D++T ++++ C T + G +H SK+G
Sbjct: 82 FLVNNKFKSALQVFVKMLQSELKP--DNYTIPYVLKACGTFHDCSFGKMIHGYSSKLGLV 139
Query: 57 SHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK-------------- 102
+YV +L MY G + + +FDE+P N+V+W+V+I+G K
Sbjct: 140 FDIYVGNSLMAMYCVFGDVVAARYVFDEIPSLNVVSWSVMISGYAKVGDVDSARLFFDEA 199
Query: 103 -------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNC 155
W +I GY + + E+L LFR M + P E +++L A G +
Sbjct: 200 PEKDKGIWGAMISGYVQNSCFKESLYLFRLMQLTDIV-PDESIFVSILSACAHLGALEIG 258
Query: 156 QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGF 215
IH + + + +S L+D YAKCG + A +LF+ S++ +++V W +ISG
Sbjct: 259 VWIHQHLNQLKLVPLSVRLSTSLLDMYAKCGNLELAKRLFD--SMNMRDVVCWNAMISGM 316
Query: 216 AMHGMGKEAVENFERMQKVGLKPNRSWRI-----------GEEGLKFFDKMVEECEVLPD 264
AMHG GK A++ F M+KVG+KP+ I EGL DKM ++P
Sbjct: 317 AMHGDGKGALKLFYDMEKVGVKPDDITFIAVFTACSYSGMAYEGLMLLDKMCSVYNIVPK 376
Query: 265 IKHYGCLIDILERAGRLEQA 284
+HYGCL+D+L RAG E+A
Sbjct: 377 SEHYGCLVDLLSRAGLFEEA 396
>gi|147818273|emb|CAN64718.1| hypothetical protein VITISV_026719 [Vitis vinifera]
Length = 499
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 94/331 (28%), Positives = 169/331 (51%), Gaps = 39/331 (11%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
++ L ++ H P PP D++T+ FL++ C L++ G +LH K G HV+V
Sbjct: 69 LHALLLHRHMFRHGP-PP--DTYTFPFLLKACSALAHLLKGQELHCQALKFGLGGHVFVE 125
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIIT---------------------GLV 101
+L +Y S + + ++FD + R++ +W ++ +V
Sbjct: 126 NSLIHLYGSNSRMDSARRVFDGMGYRDIASWTTLLACYANSCSVEAARKVFDEMPERSVV 185
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
++ ++ Y R NR EAL LFR + + + EPS+ +++VL A G + + ++ +
Sbjct: 186 SYSAMLAAYVRGNRFREALELFRELFSVK-IEPSDSCVMSVLCACANLGALDVGRWVYSF 244
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
+ D ++ LID + KCG I A +FE K++ WT ++SG AMHG+G
Sbjct: 245 VCHSKGDYVDSRIATALIDMFFKCGSIEHALLVFE--GAKEKHVGEWTAMLSGLAMHGLG 302
Query: 222 KEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGC 270
++ +E FE+M G+KP+ + EGL +FD+M + V P ++H+GC
Sbjct: 303 EQLIEAFEKMVDSGIKPDEVTFVALLSGCSHSGLVNEGLYYFDRMESDFGVEPTVEHFGC 362
Query: 271 LIDILERAGRLEQAEEVASGIPSQITNVVVW 301
++D+L RAG ++QA ++ S +P + N +W
Sbjct: 363 VVDLLGRAGLIDQAMQLISEMPFE-PNAAIW 392
>gi|297806919|ref|XP_002871343.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317180|gb|EFH47602.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 511
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 156/291 (53%), Gaps = 37/291 (12%)
Query: 46 LHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG------ 99
LH+ F + GF+S + TAL Y LG L + ++FDE+ R++ WN +ITG
Sbjct: 104 LHSQFFRSGFESDSFCCTALITAYAKLGALCCARRVFDEMSNRDVPVWNAMITGYQRRGD 163
Query: 100 ---------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ WT +I G+S+ +EAL +F M + +P+ IT+++VLP
Sbjct: 164 MKAAMELFDSMPNKNVTSWTTVISGFSQNGNYSEALTMFLCMEKDKSVKPNHITLVSVLP 223
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFD-IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
A GE+ + + GY + GF FD I+V N ++ Y+KCG I A +LF++ +++
Sbjct: 224 ACANLGELEIGRRLEGYARENGF--FDNIYVRNATLEMYSKCGMIDVAKRLFDEIG-NQR 280
Query: 204 NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFF 252
NL+SW ++I A HG EA+E + +M + G +P+ +G +G +
Sbjct: 281 NLISWNSMIGSLATHGKHDEALELYAQMLQEGERPDAVTFVGLLLACVHGGMVLKGKELL 340
Query: 253 DKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
M E ++ P ++HYGC+ID+L R G+L++A ++ +P + + VVW T
Sbjct: 341 KSMEEVHKISPKLEHYGCMIDLLGRVGKLQEACDLIKTMPMK-PDAVVWGT 390
>gi|225423995|ref|XP_002279343.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 623
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 164/371 (44%), Gaps = 97/371 (26%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS---- 78
+ FT+ ++++C ++ G Q+H K GF+ + +V T L DMY + G + D+
Sbjct: 135 NCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRGNPFVGTTLIDMYSAGGTVGDAYKIF 194
Query: 79 ---------------------------SKLFDELPERNLVTWNVIITGLVK--------- 102
+LFD PER++V WN++++G ++
Sbjct: 195 CEMFERNVVAWTSMINGYILSADLVSARRLFDLAPERDVVLWNIMVSGYIEGGDMVEARK 254
Query: 103 -------------------------------------------WTGIIDGYSRMNRSNEA 119
W +I GY+ E
Sbjct: 255 LFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALIGGYAHNGLFFEV 314
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
L F+RM + P++ T++ VL A + G + + +H Y E G +++V N L+
Sbjct: 315 LGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKG-NVYVGNALM 373
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D YAKCG I +A +F +D K+L+SW T+I G AMH G +A+ F +M+ G KP+
Sbjct: 374 DMYAKCGIIENAISVFR--GMDTKDLISWNTLIGGLAMHSRGADALNLFFQMKNAGQKPD 431
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
IG E+G +F M ++ ++P I+HYGC++D+L RAGRLEQA
Sbjct: 432 GITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLARAGRLEQAMAFV 491
Query: 289 SGIPSQITNVV 299
+P + V+
Sbjct: 492 RKMPVEADGVI 502
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 134/313 (42%), Gaps = 42/313 (13%)
Query: 16 SPLPP--LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKV---GFQSHVYVNTALGDMYV 70
+P PP L + S L+++C T Q+H + +++ GFQ + Y+ L +
Sbjct: 29 APKPPHRLLEERFIS-LLQSCKT------SKQVHQIQAQIIANGFQYNEYITPKLVTICA 81
Query: 71 SLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE 130
+L + + +LFD++P+ N+ WN + GY++ E + LF +M +
Sbjct: 82 TLKRMTYARQLFDQIPDPNIALWN----------SMFRGYAQSESYREVVFLFFQMKGMD 131
Query: 131 YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190
P+ T VL + K + + +H + K GF + V LID Y+ G +
Sbjct: 132 -IRPNCFTFPVVLKSCGKINALIEGEQVHCFLIKCGFRG-NPFVGTTLIDMYSAGGTVGD 189
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS---WRIGEE 247
A K+F + +N+V+WT++I+G+ + A F+ L P R W I
Sbjct: 190 AYKIF--CEMFERNVVAWTSMINGYILSADLVSARRLFD------LAPERDVVLWNIMVS 241
Query: 248 GLKFFDKMVEECEV---LP--DIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
G MVE ++ +P D+ + ++ G +E E + +P + N+ W
Sbjct: 242 GYIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPER--NIFSWN 299
Query: 303 TGFLRLLINSYFF 315
N FF
Sbjct: 300 ALIGGYAHNGLFF 312
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 87/212 (41%), Gaps = 36/212 (16%)
Query: 14 SHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG 73
S S +PP + T ++ C L +LG +H G + +VYV AL DMY G
Sbjct: 323 SESDVPP--NDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCG 380
Query: 74 FLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE 133
++++ +F + ++L++WN +I GL + +R +AL LF +M +
Sbjct: 381 IIENAISVFRGMDTKDLISWNTLIGGL----------AMHSRGADALNLFFQMKNAG-QK 429
Query: 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF-----------DIHVSNCLIDTY 182
P IT + +L A G V + GF F I C++D
Sbjct: 430 PDGITFIGILCACTHMGLVED-----------GFAYFQSMADDYLIMPQIEHYGCMVDML 478
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISG 214
A+ G + A V+ ++ W ++
Sbjct: 479 ARAGRLEQAMAFVRKMPVEADGVI-WAGLLGA 509
>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
gi|194689034|gb|ACF78601.1| unknown [Zea mays]
gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
Length = 606
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 153/292 (52%), Gaps = 27/292 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++T+ L++ C G Q HAV K+G H YV L +MY G + + F
Sbjct: 132 DTYTFVSLLKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAARVTF 191
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+V++N +I V R +R EAL LFR M A + P+ +T+++V
Sbjct: 192 GRADGDCVVSYNAMIAAAV----------RSSRPGEALVLFREMQA-KGLNPTPVTVISV 240
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G ++ + +H Y K G + + VS L+D YAKCG + A +F+ ++
Sbjct: 241 LSACALLGALQLGRWLHDYVRKLGLGSL-VKVSTALVDMYAKCGSLEDAIAVFQ--GMES 297
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
++ +W+ +I +A HG G+EA+ FE M+K G+KP+ +G EGL++
Sbjct: 298 RDRQAWSVMIVAYANHGYGREAISLFEEMKKQGMKPDDITFLGLLYACSHSGLVSEGLRY 357
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
FD M + ++P IKHYGC+ D+L R+G+LE+A + +P T ++WRT
Sbjct: 358 FDDMKDH-GIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTP-ILWRT 407
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 21/206 (10%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
++ C L LG LH K+G S V V+TAL DMY G L+D+ +F + R+
Sbjct: 240 VLSACALLGALQLGRWLHDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESRD 299
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
W+V+I GY R EA++LF M + +P +IT L +L A +
Sbjct: 300 RQAWSVMIVAYAN-----HGYGR-----EAISLFEEMKK-QGMKPDDITFLGLLYACSHS 348
Query: 150 GEV----RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
G V R + +G G + C+ D A+ G + A K ++ ++ +
Sbjct: 349 GLVSEGLRYFDDMKDHGIVPGIKHY-----GCVTDLLARSGQLERAYKFIDELPINPTPI 403
Query: 206 VSWTTIISGFAMHGMGKEAVENFERM 231
+ W T++S HG + FER+
Sbjct: 404 L-WRTLLSACGGHGDVELGKRVFERI 428
>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 157 bits (396), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 157/291 (53%), Gaps = 26/291 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ T +I C L + + + VY+ L DMY LG L + KLF
Sbjct: 124 DAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRLGNLTAARKLF 183
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +P+R++++W T +I GYS+ ++ ++A+ LF+ M A + +P ++T+ +V
Sbjct: 184 DNMPKRDVISW----------TSMITGYSQASQFSDAVKLFQEMMAAK-VKPDKVTVASV 232
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G++ +H Y + G A DI+V N LID Y KCG + A ++F +
Sbjct: 233 LSACAHLGKLDVGWAVHHYIRRHGVQA-DIYVGNSLIDMYCKCGMVEKALEVFH--RMKD 289
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
K+ VSWT++ISG A++G A++ F +M + G++P +G +GL++
Sbjct: 290 KDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEY 349
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
F+ M ++P +KHYGC++D+L R+G +++A E +P + +VVVWR
Sbjct: 350 FESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPI-VPDVVVWR 399
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/308 (25%), Positives = 152/308 (49%), Gaps = 26/308 (8%)
Query: 28 SFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE 87
+ ++ ++ + + +H K+GF+S+++V+ AL MY G L + K+FD + +
Sbjct: 28 ALVVALTTNINASTISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMFDGMLD 87
Query: 88 RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIW 147
R+LV+WN +I GYS+ N+ E L LF M A + +T++ ++ A
Sbjct: 88 RDLVSWNTLIC----------GYSQYNKYKEVLRLFDAMTAAN-IKADAVTMVKIILACS 136
Query: 148 KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
G+ + Y ++ D+++ N LID Y + G + +A KLF++ + +++++S
Sbjct: 137 HLGDWEFADSMVKYIKENNLE-IDVYLGNTLIDMYGRLGNLTAARKLFDN--MPKRDVIS 193
Query: 208 WTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---------SWRIGEEGLKF-FDKMVE 257
WT++I+G++ +AV+ F+ M +KP++ +G+ + + +
Sbjct: 194 WTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIR 253
Query: 258 ECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSP 317
V DI LID+ + G +E+A EV + + + V W + L +N + S
Sbjct: 254 RHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDK--DSVSWTSVISGLAVNGFANSA 311
Query: 318 ITLNSQRL 325
+ L SQ L
Sbjct: 312 LDLFSQML 319
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 92/198 (46%), Gaps = 14/198 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + ++ C L ++G +H + G Q+ +YV +L DMY G ++ + ++F
Sbjct: 225 DKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVF 284
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ +++ V+W +I+GL ++G+ +N AL LF +M E +P+ T + +
Sbjct: 285 HRMKDKDSVSWTSVISGLA-----VNGF-----ANSALDLFSQMLR-EGVQPTHGTFVGI 333
Query: 143 LPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G V + + G H C++D ++ G I A + + +
Sbjct: 334 LLACAHAGLVNKGLEYFESMESVHGLVPAMKHY-GCVVDLLSRSGNIDKAYEFIKKMPI- 391
Query: 202 RKNLVSWTTIISGFAMHG 219
++V W ++S +HG
Sbjct: 392 VPDVVVWRILLSACKLHG 409
>gi|15223858|ref|NP_177842.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122215262|sp|Q3ECB8.1|PP128_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g77170
gi|332197823|gb|AEE35944.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 467
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/328 (31%), Positives = 169/328 (51%), Gaps = 48/328 (14%)
Query: 3 VYKQLQQIYIHSHSPLPP------------LFDSFTYSFLIRTCVTLSYPNLGTQLHAVF 50
++ + + YI SPL L D ++ +I+ V + LG +LH+V
Sbjct: 84 LWNNIMRSYIRHESPLDAIQVYLGMVRSTVLPDRYSLPIVIKAAVQIHDFTLGKELHSVA 143
Query: 51 SKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGY 110
++GF + + +Y G +++ K+FDE PER L +WN II GL
Sbjct: 144 VRLGFVGDEFCESGFITLYCKAGEFENARKVFDENPERKLGSWNAIIGGL---------- 193
Query: 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG------EVRNCQLIHGYGEK 164
+ R+NEA+ +F M EP + T+++V + G ++ C L EK
Sbjct: 194 NHAGRANEAVEMFVDMKRSGL-EPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTEEK 252
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
DI + N LID Y KCG + AS +FE+ + ++N+VSW+++I G+A +G EA
Sbjct: 253 S-----DIMMLNSLIDMYGKCGRMDLASHIFEE--MRQRNVVSWSSMIVGYAANGNTLEA 305
Query: 225 VENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLID 273
+E F +M++ G++PN+ +G EEG +F M E E+ P + HYGC++D
Sbjct: 306 LECFRQMREFGVRPNKITFVGVLSACVHGGLVEEGKTYFAMMKSEFELEPGLSHYGCIVD 365
Query: 274 ILERAGRLEQAEEVASGIPSQITNVVVW 301
+L R G+L++A++V +P + NV+VW
Sbjct: 366 LLSRDGQLKEAKKVVEEMPMK-PNVMVW 392
>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g40720-like [Vitis vinifera]
Length = 854
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/293 (29%), Positives = 157/293 (53%), Gaps = 27/293 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S+T ++ C ++ + G +H K + + + TAL DMY++ G + LF
Sbjct: 457 NSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTALADMYMNCGDEATARDLF 516
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ P+R+L++WN +I VK N++++AL LF RM + EP+ +TI+ V
Sbjct: 517 EGCPDRDLISWNAMIASYVK----------NNQAHKALLLFHRMIS--EAEPNSVTIINV 564
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFN-AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L + + Q +H Y +RGF+ D+ ++N I YA+CG + SA +F+ ++
Sbjct: 565 LSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFK--TLP 622
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
++N++SW +I+G+ M+G G +A+ F +M + G +PN + E GL+
Sbjct: 623 KRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGLQ 682
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F MV++ V P++ HY C++D+L R G +++A E +P + + VWR
Sbjct: 683 LFHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIE-PDASVWRA 734
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 108/220 (49%), Gaps = 17/220 (7%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD T ++ C L LG Q+H + K F +Y+ AL +MY + G L+ S +L
Sbjct: 253 FDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQL 312
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+ +P R+ WN +I+ Y+ EA+ LF RM + E + E T++
Sbjct: 313 FESVPNRDAPLWNSMIS----------AYAAFGCHEEAMDLFIRMQS-EGVKKDERTVVI 361
Query: 142 VLPAIWK--NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+L + +G ++ L H + K G D + N L+ Y + C+ S K+F+
Sbjct: 362 MLSMCEELASGLLKGKSL-HAHVIKSGMR-IDASLGNALLSMYTELNCVESVQKIFD--R 417
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+ +++SW T+I A + + +A E FERM++ +KPN
Sbjct: 418 MKGVDIISWNTMILALARNTLRAQACELFERMRESEIKPN 457
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 98/214 (45%), Gaps = 14/214 (6%)
Query: 18 LPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD 77
L L ++ T +++ C + G +H V V TA+ D Y GF++D
Sbjct: 47 LGVLPNNTTLPLVLKACAAQNAVERGKSIHRSIQGTDLMDDVRVGTAVVDFYCKCGFVED 106
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
+ +FD + +R++V WN ++ G V W EA+ L R M E P+
Sbjct: 107 ARCVFDAMSDRDVVLWNAMVYGYVGWGCY----------EEAMLLVREMGR-ENLRPNSR 155
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
T++A+L A E+R + +HGY + G + HV+ LI Y + L D
Sbjct: 156 TMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFD--MRVLPLLFD 213
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
V R N+VSW +ISG+ G +A+E F +M
Sbjct: 214 LMVVR-NIVSWNAMISGYYDVGDYFKALELFVQM 246
>gi|15234044|ref|NP_193619.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098703|sp|O49399.2|PP321_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18840
gi|5738365|emb|CAA16741.2| putative protein [Arabidopsis thaliana]
gi|7268678|emb|CAB78886.1| putative protein [Arabidopsis thaliana]
gi|332658697|gb|AEE84097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 545
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 168/347 (48%), Gaps = 67/347 (19%)
Query: 18 LPPLF-DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY------- 69
L P+F D ++++F+++ C G Q+H +F K G + V+V L ++Y
Sbjct: 133 LGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFE 192
Query: 70 ------------------------VSLGFLKDSSKLFDELPERNLVTWNVIITG------ 99
+ G + ++ LFDE+ ERN+ +WN +I+G
Sbjct: 193 IARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEMEERNVESWNFMISGYAAAGL 252
Query: 100 ---------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+V W ++ Y+ + NE L +F +M +P T+++VL
Sbjct: 253 VKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLS 312
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A G + + +H Y +K G + ++ L+D Y+KCG I A ++F TS +++
Sbjct: 313 ACASLGSLSQGEWVHVYIDKHGIE-IEGFLATALVDMYSKCGKIDKALEVFRATS--KRD 369
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFD 253
+ +W +IIS ++HG+GK+A+E F M G KPN IG ++ K F+
Sbjct: 370 VSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGMLDQARKLFE 429
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
M V P I+HYGC++D+L R G++E+AEE+ + IP+ ++++
Sbjct: 430 MMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEIPADEASILL 476
>gi|449522624|ref|XP_004168326.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
mitochondrial-like [Cucumis sativus]
Length = 616
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/283 (33%), Positives = 149/283 (52%), Gaps = 25/283 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+S L+ C LG QLH + K F + V ++L ++Y L D+ K+F
Sbjct: 224 DDFTFSSLLSLCKYKGSGELGKQLHCLLIKQSFDLDILVASSLVNVYAKNDNLYDARKVF 283
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+P RN V+W +I GY + EA+ LFRRM +Y P E+T ++
Sbjct: 284 DEMPTRNSVSWTTMIV----------GYGQHEYGKEAVKLFRRMLRKDYC-PDELTFASL 332
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + +H K GF AF + ++N LI Y+KCG I +A + F V
Sbjct: 333 LSSCGFTSGASELMQVHSCLIKLGFEAF-LSINNGLIYAYSKCGIIAAALQCFR--LVAE 389
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+LV+WT+II G A+ G+ K+AV+ F++M G++P++ +G GL +
Sbjct: 390 PDLVTWTSIICGLALCGLEKDAVKLFDKMLSYGIRPDKIAFLGVLSACSHGGFVSMGLHY 449
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
F+ M + +++PD +H CLID+L RAG L+QA ++ +P +
Sbjct: 450 FNLMTNQYQLVPDSEHLTCLIDLLGRAGSLDQAFDLLKSMPKE 492
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 112/217 (51%), Gaps = 14/217 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T++ L R+CV L+ G QLH+ K+GF +V +A+ D Y G +D+ F
Sbjct: 123 DGITFNGLFRSCVVLNDVESGRQLHSFVMKIGFDLDCFVGSAVVDFYAKCGLYEDARLAF 182
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ R+LV WNV++ + + + SR EA+ +FR M E + + T ++
Sbjct: 183 SCILYRDLVLWNVML-----YCCVFNSLSR-----EAIEVFRLMQL-EGFKGDDFTFSSL 231
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L G + +H K+ F+ DI V++ L++ YAK ++ A K+F++
Sbjct: 232 LSLCKYKGSGELGKQLHCLLIKQSFD-LDILVASSLVNVYAKNDNLYDARKVFDEMPT-- 288
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+N VSWTT+I G+ H GKEAV+ F RM + P+
Sbjct: 289 RNSVSWTTMIVGYGQHEYGKEAVKLFRRMLRKDYCPD 325
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 138/305 (45%), Gaps = 22/305 (7%)
Query: 10 IYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY 69
I+ +H L SF+++ L S P T LH++ K+G + + V L +Y
Sbjct: 3 IWTSTHFGRSRLVHSFSFNVLKAAAPVNSIPR-DTLLHSLVVKLGLINELSVQNKLLRVY 61
Query: 70 VSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC 129
V L + LFDE+ RN+V+WN +I GLV G G +M R + F++M
Sbjct: 62 VKCRDLDSARTLFDEMARRNVVSWNTVICGLVD--GGYGGEFKM-RQHSIFLYFKKMLM- 117
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
+P IT + + +V + + +H + K GF+ D V + ++D YAKCG
Sbjct: 118 GLVDPDGITFNGLFRSCVVLNDVESGRQLHSFVMKIGFD-LDCFVGSAVVDFYAKCGLYE 176
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN---------- 239
A F + + ++LV W ++ + + +EA+E F MQ G K +
Sbjct: 177 DARLAF--SCILYRDLVLWNVMLYCCVFNSLSREAIEVFRLMQLEGFKGDDFTFSSLLSL 234
Query: 240 -RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNV 298
+ GE G + ++++ L DI L+++ + L A +V +P++ N
Sbjct: 235 CKYKGSGELGKQLHCLLIKQSFDL-DILVASSLVNVYAKNDNLYDARKVFDEMPTR--NS 291
Query: 299 VVWRT 303
V W T
Sbjct: 292 VSWTT 296
>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g59720, mitochondrial; Flags: Precursor
gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 638
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 156/296 (52%), Gaps = 30/296 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ F+++ C + + G Q+H K GF VYVN L +Y S G L + K+F
Sbjct: 150 DKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVF 209
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+PER+LV+WN +I LV R + AL LFR M EP T+ +V
Sbjct: 210 DEMPERSLVSWNSMIDALV----------RFGEYDSALQLFREMQ--RSFEPDGYTMQSV 257
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRG--FNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
L A G + H + ++ A D+ V N LI+ Y KCG + A ++F+ +
Sbjct: 258 LSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQ--GM 315
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERM--QKVGLKPNRSWRIG-----------EE 247
+++L SW +I GFA HG +EA+ F+RM ++ ++PN +G +
Sbjct: 316 QKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNK 375
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
G ++FD MV + + P ++HYGC++D++ RAG + +A ++ +P + + V+WR+
Sbjct: 376 GRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMK-PDAVIWRS 430
>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
Length = 695
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 156/296 (52%), Gaps = 30/296 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ F+++ C + + G Q+H K GF VYVN L +Y S G L + K+F
Sbjct: 207 DKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVF 266
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+PER+LV+WN +I LV R + AL LFR M EP T+ +V
Sbjct: 267 DEMPERSLVSWNSMIDALV----------RFGEYDSALQLFREMQ--RSFEPDGYTMQSV 314
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRG--FNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
L A G + H + ++ A D+ V N LI+ Y KCG + A ++F+ +
Sbjct: 315 LSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQ--GM 372
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERM--QKVGLKPNRSWRIG-----------EE 247
+++L SW +I GFA HG +EA+ F+RM ++ ++PN +G +
Sbjct: 373 QKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNK 432
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
G ++FD MV + + P ++HYGC++D++ RAG + +A ++ +P + + V+WR+
Sbjct: 433 GRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMK-PDAVIWRS 487
>gi|356567012|ref|XP_003551717.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g44880-like [Glycine max]
Length = 599
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 165/378 (43%), Gaps = 101/378 (26%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF-- 74
P P D +T++ L++ C T GT LH + K G +YV TAL DMYV G
Sbjct: 120 PFTP--DGYTFTALVKGCATRVATGEGTLLHGMVLKNGVCFDLYVATALVDMYVKFGVLG 177
Query: 75 -----------------------------LKDSSKLFDELPERNLVTWNVIITGLVK--- 102
+ ++ +LFDE+ +R++V +N +I G VK
Sbjct: 178 SARKVFDEMSVRSKVSWTAVIVGYARCGDMSEARRLFDEMEDRDIVAFNAMIDGYVKMGC 237
Query: 103 -------------------------------------------------WTGIIDGYSRM 113
W +I GY +
Sbjct: 238 VGLARELFNEMRERNVVSWTSMVSGYCGNGDVENAKLMFDLMPEKNVFTWNAMIGGYCQN 297
Query: 114 NRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIH 173
RS++AL LFR M EP+E+T++ VLPA+ G + + IH + ++ +
Sbjct: 298 RRSHDALELFREMQTAS-VEPNEVTVVCVLPAVADLGALDLGRWIHRFALRKKLDR-SAR 355
Query: 174 VSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
+ LID YAKCG I A FE + + SW +I+GFA++G KEA+E F RM +
Sbjct: 356 IGTALIDMYAKCGEITKAKLAFE--GMTERETASWNALINGFAVNGCAKEALEVFARMIE 413
Query: 234 VGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLE 282
G PN IG EEG ++F+ M E + P ++HYGC++D+L RAG L+
Sbjct: 414 EGFGPNEVTMIGVLSACNHCGLVEEGRRWFNAM-ERFGIAPQVEHYGCMVDLLGRAGCLD 472
Query: 283 QAEEVASGIPSQITNVVV 300
+AE + +P +++
Sbjct: 473 EAENLIQTMPYDANGIIL 490
>gi|255572939|ref|XP_002527400.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533210|gb|EEF34966.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 621
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 155/314 (49%), Gaps = 45/314 (14%)
Query: 28 SFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE 87
+ +I C L +H K GF+ + +V +AL +Y G + + LF E+
Sbjct: 182 AVVISICADLGAFVRAKIIHEYAVKGGFEEYSFVKSALICVYGKHGDVNGAWNLFLEMKN 241
Query: 88 RNLVTWNVIITG-----------------------------LVKWTGIIDGYSRMNRSNE 118
++L +WN +IT +V W+ IIDG++ R E
Sbjct: 242 KSLASWNALITSHAEAGLCDEALEIFSQLERSGDCPRLRPNVVSWSAIIDGFASKGREKE 301
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
AL LFRRM + + +TI VL + + + IHG+ R +I V N L
Sbjct: 302 ALELFRRMQHAKIL-ANAVTISTVLSLCAELAALHLGREIHGH-VVRAVMVNNILVGNGL 359
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
++ YAKCGC+ +FE T +RK+L+SW ++I+G+ MHG+G A+E F++M K+G KP
Sbjct: 360 VNMYAKCGCLKEGHMIFEKT--ERKDLISWNSMITGYGMHGLGMNALETFDQMIKLGFKP 417
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ + EG + FD+M+++ + P ++HY C++D+L RAG L +A E+
Sbjct: 418 DGVTFVAVLSSCSHSGLVHEGRRLFDQMLKKYRIEPQMEHYACMVDLLGRAGLLREASEI 477
Query: 288 ASGIPSQITNVVVW 301
+P N VW
Sbjct: 478 VKNMPVA-PNACVW 490
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 83/304 (27%), Positives = 139/304 (45%), Gaps = 38/304 (12%)
Query: 18 LPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD 77
+ L D FT+ +IR C + LG +H ++GFQSH++V L MY LG ++D
Sbjct: 36 IGTLGDGFTFPLVIRACAYMGSFILGKTIHGHVLEMGFQSHLHVGNELIGMYAKLGRMRD 95
Query: 78 SSKLFDELPERNLVTWNVIITG-------------------------LVKWTGIIDGYSR 112
+ LFD + R+ ++WN +++ LV WT +I Y+R
Sbjct: 96 ARHLFDRMSVRSYISWNTMVSAYAFNYDCNGALEIFQRMESEGMEPNLVTWTSLISSYAR 155
Query: 113 MNRSNEALALF--RRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF 170
EA+ LF RM E + + ++++ + G ++IH Y K GF +
Sbjct: 156 SGWHEEAMELFGLMRMKGVEVSGEALAVVISICADL---GAFVRAKIIHEYAVKGGFEEY 212
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
V + LI Y K G + A LF + + K+L SW +I+ A G+ EA+E F +
Sbjct: 213 SF-VKSALICVYGKHGDVNGAWNLFLE--MKNKSLASWNALITSHAEAGLCDEALEIFSQ 269
Query: 231 MQKVG----LKPN-RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAE 285
+++ G L+PN SW +G + E E+ ++H L + + + L
Sbjct: 270 LERSGDCPRLRPNVVSWSAIIDGFASKGREKEALELFRRMQHAKILANAVTISTVLSLCA 329
Query: 286 EVAS 289
E+A+
Sbjct: 330 ELAA 333
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 89/198 (44%), Gaps = 12/198 (6%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L ++ T S ++ C L+ +LG ++H + +++ V L +MY G LK+
Sbjct: 315 LANAVTISTVLSLCAELAALHLGREIHGHVVRAVMVNNILVGNGLVNMYAKCGCLKEGHM 374
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F++ ++L++WN +IT GY AL F +M + +P +T +
Sbjct: 375 IFEKTERKDLISWNSMIT----------GYGMHGLGMNALETFDQMIKLGF-KPDGVTFV 423
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
AVL + +G V + + K+ + C++D + G + AS++ ++ V
Sbjct: 424 AVLSSCSHSGLVHEGRRLFDQMLKKYRIEPQMEHYACMVDLLGRAGLLREASEIVKNMPV 483
Query: 201 DRKNLVSWTTIISGFAMH 218
N W +++ MH
Sbjct: 484 A-PNACVWGALLNSCRMH 500
>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
Length = 629
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 156/296 (52%), Gaps = 30/296 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ F+++ C + + G Q+H K GF VYVN L +Y S G L + K+F
Sbjct: 141 DKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVF 200
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+PER+LV+WN +I LV R + AL LFR M EP T+ +V
Sbjct: 201 DEMPERSLVSWNSMIDALV----------RFGEYDSALQLFREMQ--RSFEPDGYTMQSV 248
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRG--FNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
L A G + H + ++ A D+ V N LI+ Y KCG + A ++F+ +
Sbjct: 249 LSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQ--GM 306
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERM--QKVGLKPNRSWRIG-----------EE 247
+++L SW +I GFA HG +EA+ F+RM ++ ++PN +G +
Sbjct: 307 QKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNK 366
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
G ++FD MV + + P ++HYGC++D++ RAG + +A ++ +P + + V+WR+
Sbjct: 367 GRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMK-PDAVIWRS 421
>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Glycine max]
Length = 631
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/275 (33%), Positives = 151/275 (54%), Gaps = 24/275 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FT F+++ C LS G +H + G++ V+V AL DMY G + D+ +F
Sbjct: 158 DNFTLPFVLKACSALSTIGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVF 217
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++ +R+ V WN ++ Y++ +E+L+L MAA + P+E T++ V
Sbjct: 218 DKIVDRDAVLWNSMLA----------AYAQNGHPDESLSLCCEMAA-KGVRPTEATLVTV 266
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ + + + + IHG+G + GF ++ V LID YAKCG + A LFE +
Sbjct: 267 ISSSADIACLPHGREIHGFGWRHGFQ-YNDKVKTALIDMYAKCGSVKVACVLFE--RLRE 323
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQK---------VG-LKPNRSWRIGEEGLKFF 252
K +VSW II+G+AMHG+ EA++ FERM K VG L R+ +EG +
Sbjct: 324 KRVVSWNAIITGYAMHGLAVEALDLFERMMKEAQPDHITFVGALAACSRGRLLDEGRALY 383
Query: 253 DKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ MV +C + P ++HY C++D+L G+L++A ++
Sbjct: 384 NLMVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDL 418
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 109/220 (49%), Gaps = 16/220 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ + Y+ L+ +C++ G QLHA ++G ++ + T L + Y L+++ LF
Sbjct: 57 NHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLF 116
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY-TEPSEITILA 141
D++P+ NL WNV+I W G A++L+ +M EY +P T+
Sbjct: 117 DKIPKGNLFLWNVLIRAYA-WNG---------PHETAISLYHQML--EYGLKPDNFTLPF 164
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL A + ++IH + G+ D+ V L+D YAKCGC+ A +F D VD
Sbjct: 165 VLKACSALSTIGEGRVIHERVIRSGWER-DVFVGAALVDMYAKCGCVVDARHVF-DKIVD 222
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
R + V W ++++ +A +G E++ M G++P +
Sbjct: 223 R-DAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEA 261
>gi|297843364|ref|XP_002889563.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
gi|297335405|gb|EFH65822.1| PDE247 [Arabidopsis lyrata subsp. lyrata]
Length = 500
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 150/292 (51%), Gaps = 37/292 (12%)
Query: 42 LGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG- 99
LG LH K+G ++HV V TA+ MY G +K + +FD + ++N VTWN +I G
Sbjct: 91 LGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRVKKARCVFDYMEDKNSVTWNTMIDGY 150
Query: 100 --------------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
L+ WT +I+G+ EALA FR M +P + I
Sbjct: 151 MRSGQVDNAAKMFDKMPERDLISWTAMINGFVNKGFHEEALAWFREMQ-ISGVKPDYVAI 209
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+A L A G + +H Y + F ++ VSN LID Y +CGC+ A ++F+
Sbjct: 210 IAALNACTNLGALSFGLWVHRYVMSQDFKN-NVRVSNSLIDLYCRCGCVEFARQVFD--K 266
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
++++ +VSW ++I GFA +G E++ F +MQ+ KP+ G EEG
Sbjct: 267 MEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEERFKPDAVTFTGALTACSHVGLVEEG 326
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
L++F M+ + + P I+HYGCL+D+ RAGRLE A ++ +P + VV+
Sbjct: 327 LRYFQIMISDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMPMKPNEVVI 378
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 89/200 (44%), Gaps = 34/200 (17%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
+ C L + G +H F+++V V+ +L D+Y G ++ + ++FD++ +R +
Sbjct: 213 LNACTNLGALSFGLWVHRYVMSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTV 272
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
V+WN +I G++ ++E+L FR+M E +P +T L A G
Sbjct: 273 VSWNSVIV----------GFAANGNAHESLVYFRKMQE-ERFKPDAVTFTGALTACSHVG 321
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSN-----------CLIDTYAKCGCIFSASKLFEDTS 199
V + G F I +S+ CL+D Y++ G + A KL +
Sbjct: 322 LV-----------EEGLRYFQIMISDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMP 370
Query: 200 VDRKNLVSWTTIISGFAMHG 219
+ + N V ++++ HG
Sbjct: 371 M-KPNEVVIGSLLAACRNHG 389
>gi|6729034|gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thaliana]
Length = 548
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/263 (38%), Positives = 145/263 (55%), Gaps = 29/263 (11%)
Query: 51 SKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGY 110
SKVGF +V + T+L DMY G L+ + LFD +PER LV+WN IITG Y
Sbjct: 228 SKVGF--NVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITG----------Y 275
Query: 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF 170
S+ + EAL +F M P ++T L+V+ A G + Q IH Y K GF
Sbjct: 276 SQNGDAEEALCMFLDMLDLGIA-PDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGF-VK 333
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
D + L++ YAK G SA K FED +++K+ ++WT +I G A HG G EA+ F+R
Sbjct: 334 DAAIVCALVNMYAKTGDAESAKKAFED--LEKKDTIAWTVVIIGLASHGHGNEALSIFQR 391
Query: 231 MQKVG-LKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERA 278
MQ+ G P+ +G EEG ++F +M + + P ++HYGC++DIL RA
Sbjct: 392 MQEKGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRA 451
Query: 279 GRLEQAEEVASGIPSQITNVVVW 301
GR E+AE + +P + NV +W
Sbjct: 452 GRFEEAERLVKTMPVK-PNVNIW 473
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 121/233 (51%), Gaps = 28/233 (12%)
Query: 8 QQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGD 67
Q++ +SP D FT+ ++++ C L G+ +H K GF+ ++YV+T L
Sbjct: 96 QEMLRKGYSP-----DYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLH 150
Query: 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA 127
MY+ G + ++F+++P+ N+V W +I+G V NR ++A+ FR M
Sbjct: 151 MYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVN----------NNRFSDAIEAFREMQ 200
Query: 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC 187
+ + +E ++ +L A + + + K GFN ++ LID YAKCG
Sbjct: 201 S-NGVKANETIMVDLLVACGRCFDPY-------FQSKVGFNVI---LATSLIDMYAKCGD 249
Query: 188 IFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+ +A LF+ + + LVSW +II+G++ +G +EA+ F M +G+ P++
Sbjct: 250 LRTARYLFD--GMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDK 300
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 19/218 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ +IR + LG +HA SK GF + AL +MY G + + K F
Sbjct: 299 DKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAF 358
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++L +++ + W V+I GL + NEAL++F+RM P IT L V
Sbjct: 359 EDLEKKDTIAWTVVIIGL----------ASHGHGNEALSIFQRMQEKGNATPDGITYLGV 408
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN--CLIDTYAKCGCIFSASKLFEDTSV 200
L A G V Q + E R + + V + C++D ++ G A +L + V
Sbjct: 409 LYACSHIGLVEEGQ--RYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPV 466
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
+ N+ W +++G +H E +E +R++ + +P
Sbjct: 467 -KPNVNIWGALLNGCDIH----ENLELTDRIRSMVAEP 499
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 99/203 (48%), Gaps = 9/203 (4%)
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
W +I GYS ++AL ++ M Y+ P T VL A +++ +HG+
Sbjct: 75 WNSMIRGYSNSPNPDKALIFYQEMLRKGYS-PDYFTFPYVLKACSGLRDIQFGSCVHGFV 133
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
K GF +++VS CL+ Y CG + ++FED + + N+V+W ++ISGF +
Sbjct: 134 VKTGFEV-NMYVSTCLLHMYMCCGEVNYGLRVFED--IPQWNVVAWGSLISGFVNNNRFS 190
Query: 223 EAVENFERMQKVGLKPNRSWRIG--EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGR 280
+A+E F MQ G+K N + + + FD + +V ++ LID+ + G
Sbjct: 191 DAIEAFREMQSNGVKANETIMVDLLVACGRCFDPYFQS-KVGFNVILATSLIDMYAKCGD 249
Query: 281 LEQAEEVASGIPSQITNVVVWRT 303
L A + G+P + +V W +
Sbjct: 250 LRTARYLFDGMPER--TLVSWNS 270
>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/304 (31%), Positives = 156/304 (51%), Gaps = 36/304 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D TY F+I+ C S G +H K GF+ Y+ ++L +Y + L + +LF
Sbjct: 165 DHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLF 224
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
+ R++V+WN +I G VK W +I+GY+ + NEALA
Sbjct: 225 NLCSARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALA 284
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF +M A +P+E T++++L A G + +H Y I V L+D
Sbjct: 285 LFDQMRAVG-VKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSI-VGTALVDM 342
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG I A+++F +++ K++++W TII+G A+HG KEA + F+ M++ G++PN
Sbjct: 343 YAKCGKISLATQVF--NAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDI 400
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+ +EG K D M + P ++HYGC+ID+L RAG LE+A E+
Sbjct: 401 TFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGT 460
Query: 291 IPSQ 294
+P +
Sbjct: 461 MPME 464
>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
chloroplastic-like [Brachypodium distachyon]
Length = 892
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/253 (35%), Positives = 133/253 (52%), Gaps = 24/253 (9%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
T A+F + HV TA+ Y +G L D+ LFD LP ++ V WN
Sbjct: 437 ATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKDFVCWN-------- 488
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
+IDGY++ R NEAL LFRRM EP E+T++ VL A+ + G V + + +H Y
Sbjct: 489 --AMIDGYTQHGRPNEALRLFRRMLG-SGVEPDEVTVVLVLSAVAQLGTVESGKWLHSYV 545
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
+ + V LID Y KCG + A +F + K++V W +I+G+AMHG +
Sbjct: 546 KNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFH--GIGDKDIVVWNAMINGYAMHGDSR 603
Query: 223 EAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCL 271
+A+E F + ++ GL P IG EEG +FF M E + P I+HYGC+
Sbjct: 604 KALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGCM 663
Query: 272 IDILERAGRLEQA 284
+D+L RAG +++A
Sbjct: 664 VDLLGRAGLIKEA 676
>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g20230-like [Glycine max]
Length = 748
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 115/371 (30%), Positives = 180/371 (48%), Gaps = 54/371 (14%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T S ++ L +G Q+H K G S +V +A+ DMY G +K+ S++F
Sbjct: 239 DGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVF 298
Query: 83 DELPERNLVTWNVIITGL-------------------------VKWTGIIDGYSRMNRSN 117
DE+ E + + N +TGL V WT II S+ +
Sbjct: 299 DEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDL 358
Query: 118 EALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRG-FNAFDIHVSN 176
EAL LFR M A EP+ +TI +++PA + + + IH + +RG F+ D++V +
Sbjct: 359 EALELFRDMQA-YGVEPNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFD--DVYVGS 415
Query: 177 CLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
LID YAKCG I A + F+ S NLVSW ++ G+AMHG KE +E F M + G
Sbjct: 416 ALIDMYAKCGRIQLARRCFDKMSA--LNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQ 473
Query: 237 KPN-----------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAE 285
KP+ + EEG + ++ M EE + P ++HY CL+ +L R G+LE+A
Sbjct: 474 KPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAY 533
Query: 286 EVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLN---SQRLFFF----PAALYALTQI 338
+ +P + + VW LL + + ++L +++LFF P L+ I
Sbjct: 534 SIIKEMPFE-PDACVWGA----LLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNI 588
Query: 339 LGFKPLFRKES 349
K L+ +E+
Sbjct: 589 YASKGLWDEEN 599
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 135/287 (47%), Gaps = 61/287 (21%)
Query: 11 YIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV 70
+ H H PL + D+F I++C +L + G QLHA + GF + V ++L MY+
Sbjct: 92 FSHLH-PLRLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYL 150
Query: 71 SLGFLKDSSKLFDELPERNLVTWNVIITG-------------------------LVKWTG 105
+ D+ KLFD +P+R++V W+ +I G LV W G
Sbjct: 151 KCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNG 210
Query: 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
++ G+ +EA+ +FR M + P T+ VLPA+ +V +HGY K+
Sbjct: 211 MLAGFGNNGFYDEAVGMFRMMLVQGFW-PDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQ 269
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFE-----------------------DTSV-- 200
G + D V + ++D Y KCGC+ S++F+ DT++
Sbjct: 270 GLGS-DKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEV 328
Query: 201 -----DRK---NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D+K N+V+WT+II+ + +G EA+E F MQ G++PN
Sbjct: 329 FNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPN 375
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 92/255 (36%), Gaps = 62/255 (24%)
Query: 31 IRTCVTLSYPNL--GTQLHAVFSKVGFQSHVYVNTALGDMY---VSLGFLKDSSKLFDEL 85
+ C++ S +L Q HA+ ++ S + T+L Y +SL + S L L
Sbjct: 5 LSQCLSSSTASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHL 64
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFR-----RMAACEYTEPSEITIL 140
P L ++ + +I ++R + L F R+ + PS I
Sbjct: 65 PHPTLFSF----------SSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSC 114
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
A L A+ Q +H + GF I V++ L Y KC I A KLF D
Sbjct: 115 ASLRALDPG------QQLHAFAAASGFLTDSI-VASSLTHMYLKCDRILDARKLF-DRMP 166
Query: 201 DRK----------------------------------NLVSWTTIISGFAMHGMGKEAVE 226
DR NLVSW +++GF +G EAV
Sbjct: 167 DRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVG 226
Query: 227 NFERMQKVGLKPNRS 241
F M G P+ S
Sbjct: 227 MFRMMLVQGFWPDGS 241
>gi|255539585|ref|XP_002510857.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549972|gb|EEF51459.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 641
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 159/312 (50%), Gaps = 37/312 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DS T +I C L + + VY+ +L DMY G + + ++F
Sbjct: 257 DSVTMVKVILACSYLCEDGVVDSMVKYIEDKHVDIDVYLGNSLIDMYGRRGLVDLARRVF 316
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
D + E+N+V+WN ++TG ++ WT +I G ++ N+ ++AL
Sbjct: 317 DRMQEKNIVSWNAMLTGYATAGDLVAAKKLFNEMPIRNVISWTCMISGCAQANQCSDALK 376
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF+ M +P EIT+ +VL A G + Q +H Y + + D++V N LID
Sbjct: 377 LFQEMMDAN-VKPDEITVSSVLSACSHLGLLDTGQTVHEYMCRHDIKS-DVYVGNALIDM 434
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
Y KCG + A ++F D + +K+ VSWT++I G A++G E F +M + GL+P
Sbjct: 435 YCKCGVVDKALEVFHD--MKKKDSVSWTSMILGLAVNGFVDNVFELFSQMLRDGLQPTHG 492
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
IG ++GL++F+ M + P++KHYGC++D+L R+G L++A E
Sbjct: 493 SFIGILLACTHAGLVDKGLEYFESMEHVYGLRPEMKHYGCVVDLLSRSGELDRAYEFIKQ 552
Query: 291 IPSQITNVVVWR 302
+P + +VV+WR
Sbjct: 553 MPV-VPDVVLWR 563
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 95/346 (27%), Positives = 153/346 (44%), Gaps = 57/346 (16%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D+ T+ +L + C + G H K+GF S++++ +L MY G L + K
Sbjct: 154 LGDNLTFIYLFKACSRVKDVLHGQVFHVQVLKLGFGSYLFIENSLIRMYGYFGELGYAQK 213
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD++ +R+LV+WN +I GYS+ NR E L LF M T S +T++
Sbjct: 214 VFDKMDDRDLVSWNSLIC----------GYSQCNRFKEVLDLFNLMREANVTADS-VTMV 262
Query: 141 AVLPA---IWKNGEVRNC-----------------QLIHGYGEKRGF-----NAFD---- 171
V+ A + ++G V + LI YG +RG FD
Sbjct: 263 KVILACSYLCEDGVVDSMVKYIEDKHVDIDVYLGNSLIDMYG-RRGLVDLARRVFDRMQE 321
Query: 172 --IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFE 229
I N ++ YA G + +A KLF + + +N++SWT +ISG A +A++ F+
Sbjct: 322 KNIVSWNAMLTGYATAGDLVAAKKLFNEMPI--RNVISWTCMISGCAQANQCSDALKLFQ 379
Query: 230 RMQKVGLKPNRSW------RIGEEGLKFFDKMVEECEVLPDIKHY----GCLIDILERAG 279
M +KP+ GL + V E DIK LID+ + G
Sbjct: 380 EMMDANVKPDEITVSSVLSACSHLGLLDTGQTVHEYMCRHDIKSDVYVGNALIDMYCKCG 439
Query: 280 RLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRL 325
+++A EV + + + V W + L L +N + + L SQ L
Sbjct: 440 VVDKALEVFHDMKKK--DSVSWTSMILGLAVNGFVDNVFELFSQML 483
>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Glycine max]
Length = 638
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 161/329 (48%), Gaps = 52/329 (15%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT+ +++ C ++ G Q+H + K G +V T L MYV G ++D++ LF
Sbjct: 116 NQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLF 175
Query: 83 ---------------DEL-PERNLVTWNVIITG---------------------LVKWTG 105
DE E N+V NV++ G +V W
Sbjct: 176 YRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNV 235
Query: 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
+I GY++ EA+ +F RM P+ +T+++VLPAI + G + + +H Y EK
Sbjct: 236 MISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKN 295
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225
D+ + + L+D YAKCG I A ++FE + + N+++W +I G AMHG +
Sbjct: 296 KIRIDDV-LGSALVDMYAKCGSIEKAIQVFE--RLPQNNVITWNAVIGGLAMHGKANDIF 352
Query: 226 ENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDI 274
RM+K G+ P+ I +EG FF+ MV + P I+HYGC++D+
Sbjct: 353 NYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDL 412
Query: 275 LERAGRLEQAEEVASGIPSQITNVVVWRT 303
L RAG LE+AEE+ +P + + V+W+
Sbjct: 413 LGRAGYLEEAEELILNMPMKPDD-VIWKA 440
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 136/320 (42%), Gaps = 80/320 (25%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD------SSKLFDELPERNLVTWNVIIT 98
Q+HA K G Q+H + A+ + L D + +FD+LPERN WN +I
Sbjct: 33 QVHAFLVKTG-QTH---DNAIATEILRLSATSDFRDIGYALSVFDQLPERNCFAWNTVIR 88
Query: 99 GLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLI 158
L + +R +AL +F +M + EP++ T +VL A + + +
Sbjct: 89 ALAE---------TQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQV 139
Query: 159 HGYGEKRGF----------------------------------------------NAFDI 172
HG K G F++
Sbjct: 140 HGLLLKFGLVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNV 199
Query: 173 HVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQ 232
+ N ++D YA+ G + +A +LF+ + ++++VSW +ISG+A +G KEA+E F RM
Sbjct: 200 VLCNVMVDGYARVGNLKAARELFDRMA--QRSVVSWNVMISGYAQNGFYKEAIEIFHRMM 257
Query: 233 KVG-LKPNRSW---------RIGEEGL-KFFDKMVEECEVLPDIKHYGCLIDILERAGRL 281
++G + PNR R+G L K+ E+ ++ D L+D+ + G +
Sbjct: 258 QMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSI 317
Query: 282 EQAEEVASGIPSQITNVVVW 301
E+A +V +P NV+ W
Sbjct: 318 EKAIQVFERLPQ--NNVITW 335
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 42 LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV 101
LG +H K + + +AL DMY G ++ + ++F+ LP+ N++TWN +I GL
Sbjct: 284 LGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGL- 342
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQ----- 156
+ ++N+ RM C + PS++T +A+L A G V +
Sbjct: 343 ---------AMHGKANDIFNYLSRMEKCGIS-PSDVTYIAILSACSHAGLVDEGRSFFND 392
Query: 157 LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFA 216
+++ G K + C++D + G + A +L + + +++ W ++
Sbjct: 393 MVNSVGLKPKIEHY-----GCMVDLLGRAGYLEEAEELILNMPMKPDDVI-WKALLGASK 446
Query: 217 MH---GMGKEAVENFERM 231
MH +G A E +M
Sbjct: 447 MHKNIKIGMRAAEVLMQM 464
>gi|307136045|gb|ADN33897.1| pentatricopeptide (PPR) repeat-containing protein [Cucumis melo
subsp. melo]
Length = 391
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/308 (28%), Positives = 161/308 (52%), Gaps = 37/308 (12%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D+ +S ++++C L P+LG +HA +K S +V AL DMY + + KL
Sbjct: 9 LDAHVFSLVLKSCTALRRPHLGIAIHAHSAKSSLLSSPFVACALVDMYGKSLSVSLARKL 68
Query: 82 FDELPERNLVTWNVIITGLV----------------------KWTGIIDGYSRMNRSNEA 119
FDE+P R++V WNV+++ V + I+ G S++ +A
Sbjct: 69 FDEIPHRSVVVWNVMLSLYVHSNMLFGALQLFEAMDVPPNASSFNPIVAGLSKLEDGFKA 128
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
+A +R+M C +P+ IT+LA+LPA + + IHG+ + + +S+ L+
Sbjct: 129 IAFYRQMQQCGL-KPNLITLLALLPASVGVASLDLIKQIHGFAMRNDIGGH-LQLSSGLV 186
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+ Y +CGC+ A +F++ + +++V+W+++IS A+HG A+ F++M+ ++P+
Sbjct: 187 EAYGRCGCLSYAHNVFDNMT--ERDVVAWSSLISAHALHGEASTALNIFQQMELSKVQPD 244
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
IG +E L +F++M + + HY CL+D+L RAGRL +A ++
Sbjct: 245 AITFIGVLKACSHVGLADEALDYFNRMQRDYGLQASSDHYSCLVDVLSRAGRLHEAHDII 304
Query: 289 SGIPSQIT 296
+P ++T
Sbjct: 305 REMPVRVT 312
>gi|90265157|emb|CAH67783.1| H0201G08.10 [Oryza sativa Indica Group]
Length = 530
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 148/296 (50%), Gaps = 39/296 (13%)
Query: 41 NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVII--- 97
N G +HA+ G V+V+T L +Y G L S ++FD++P R+ +TWN ++
Sbjct: 132 NPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQY 191
Query: 98 ------------------TGLVKWTGIIDGYSRMNRSNEALALFRRM---AACEYTEPSE 136
+V W ++ GY R EAL LFR+M ++C P+
Sbjct: 192 ARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCA-VHPNV 250
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
T+ +L A G + +H Y E+ N D ++ CLID Y KCG I +A ++FE
Sbjct: 251 PTMSTILGACAGAGCLETGIWVHAYIERNRMND-DGYLDRCLIDMYCKCGSIDNALQVFE 309
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG----------- 245
+K+L SWTT+I G AMHG +A+ F+ MQ G+ P+ +G
Sbjct: 310 KAP-RKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLV 368
Query: 246 EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+EGL +F M + + P I+HYGC+ID+L R GRL++A + +P N V+W
Sbjct: 369 DEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMD-PNTVIW 423
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 125/298 (41%), Gaps = 33/298 (11%)
Query: 44 TQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
+ +H + K G ++ TAL Y +LG + +LFDE+PE+ GLV
Sbjct: 29 SSIHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQ----------GLVP 78
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGE---VRN-CQLI 158
T + + ++ +A+A+F M A + P + + L A G RN ++I
Sbjct: 79 RTAMARAHVASGQAAQAIAVFGDMVA-DGVFPDNVAVAVALGACHGAGSWTARRNPGKMI 137
Query: 159 HGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218
H G D+ VS LI Y + G + + ++F+D + ++ ++W ++ +A H
Sbjct: 138 HALVVTSGI-VPDVFVSTELIRVYGESGELPVSRRVFDD--MPSRSTITWNAMLHQYARH 194
Query: 219 GMGKEAVENFERMQKVGLKPNRSWRIG-------EEGLKFFDKMV--EECEVLPDIKHYG 269
G A E F M + + + G E L F +MV C V P++
Sbjct: 195 GKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMS 254
Query: 270 CLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFL-RLLINSYFFSPITLNSQRLF 326
++ AG LE V + I N G+L R LI+ Y N+ ++F
Sbjct: 255 TILGACAGAGCLETGIWVHAYIERNRMN----DDGYLDRCLIDMYCKCGSIDNALQVF 308
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 90/224 (40%), Gaps = 27/224 (12%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T S ++ C G +HA + Y++ L DMY G + ++ ++F++
Sbjct: 252 TMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKA 311
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM---AACEYTEPSEITILAV 142
P + L WT +I G + R+ +AL +F M C P ++T++ V
Sbjct: 312 PRKK---------DLFSWTTVICGLAMHGRTTDALRMFDMMQDNGIC----PDDVTLVGV 358
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFN-AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G V L + Y + F I C+ID + G + A + +D
Sbjct: 359 LNACAHGGLVDE-GLGYFYSMEAKFRITPKIEHYGCMIDLLGRVGRLQEAYSMIRTMPMD 417
Query: 202 RKNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKPNRSW 242
N V W +S +HG +GK A E R L P+ W
Sbjct: 418 -PNTVIWGAFLSACKVHGNMELGKIAAEELTR-----LDPDDPW 455
>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
Length = 1725
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 153/294 (52%), Gaps = 36/294 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ F+I+ C +LG +H K GF V+V L D Y G + + K+F
Sbjct: 124 DKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVF 183
Query: 83 DELPERNLVTWNVIITGL---------------------VKWTGIIDGYSRMNRSNEALA 121
+++ RN+V+W +I+GL V WT +I+GY R + EAL
Sbjct: 184 EKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALE 243
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF+RM A E P+E T+++++ A + G + + IH Y K +++ LID
Sbjct: 244 LFKRMQA-ENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIE-IGVYLGTALIDM 301
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
Y+KCG I A ++FE ++ RK+L +W ++I+ +HG+G+EA+ F M++V +KP+
Sbjct: 302 YSKCGSIKDAIEVFE--TMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAI 359
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
IG +EG +F +M + + P +HY C+ ++ R+ L++A
Sbjct: 360 TFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 132/274 (48%), Gaps = 24/274 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
DS ++ C +S + +H K GF + V L D Y G S K+
Sbjct: 1249 LDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKV 1308
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + E++ ++WN +I Y++ S EAL +F M + +T+ A
Sbjct: 1309 FDWMEEKDDISWNSMIAV----------YAQSGLSGEALEVFHGMVRHVGVRYNAVTLSA 1358
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL A G +R + IH K +++ V +ID Y KCG + A K F+ +
Sbjct: 1359 VLLACAHAGALRAGKCIHDQVIKMDLE-YNVCVGTSIIDMYCKCGRVEMAKKTFD--RMK 1415
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLK 250
KN+ SWT +++G+ MHG KEA++ F +M + G+KPN + EEG
Sbjct: 1416 EKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWH 1475
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
+F+ M + ++ P I+HYGC++D+ RAG L +A
Sbjct: 1476 WFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEA 1509
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/280 (28%), Positives = 141/280 (50%), Gaps = 33/280 (11%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
++ I++C L G H GF++ ++V++AL DMY G LKD+ LFDE+
Sbjct: 1144 SFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEI 1203
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE--------I 137
P RN+V+ WT +I GY + +++ AL LF+ E TE + +
Sbjct: 1204 PLRNVVS----------WTSMITGYVQNEQADNALLLFKDFLE-EETEVEDGNNVPLDSV 1252
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
+++VL A + + +HG+ K+GF+ I V N L+D YAKCG + K+F+
Sbjct: 1253 VMVSVLSACSRVSGKGITEGVHGFVVKKGFDG-SIGVGNTLMDAYAKCGQPLVSKKVFD- 1310
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM-QKVGLKPNRS------WRIGEEGLK 250
++ K+ +SW ++I+ +A G+ EA+E F M + VG++ N G
Sbjct: 1311 -WMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGAL 1369
Query: 251 FFDKMVEECEVLPDIKHYGC----LIDILERAGRLEQAEE 286
K + + + D+++ C +ID+ + GR+E A++
Sbjct: 1370 RAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKK 1409
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 107/240 (44%), Gaps = 30/240 (12%)
Query: 29 FLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPER 88
FL++ C + Q+HA + G + + L +Y + G + + LF ++
Sbjct: 32 FLLQNCKNFKHLR---QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNP 88
Query: 89 NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148
TWN+II I+G S +AL L++ M C+ + T V+ A
Sbjct: 89 CTFTWNLIIRA-----NTINGLSE-----QALMLYKNM-VCQGIAADKFTFPFVIKACTN 137
Query: 149 NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSW 208
+ +++HG K GF+ D+ V N LID Y KCG A K+FE V +N+VSW
Sbjct: 138 FLSIDLGKVVHGSLIKYGFSG-DVFVQNNLIDFYFKCGHTRFALKVFEKMRV--RNVVSW 194
Query: 209 TTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW----------RIGEEGLKFFDKMVEE 258
TT+ISG G +EA F+ + K SW + EE L+ F +M E
Sbjct: 195 TTVISGLISCGDLQEARRIFDEIPS---KNVVSWTAMINGYIRNQQPEEALELFKRMQAE 251
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 91/202 (45%), Gaps = 22/202 (10%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
+++ T S ++ C G +H K+ + +V V T++ DMY G ++ + K
Sbjct: 1351 YNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKT 1410
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + E+N+ + WT ++ GY R+ EAL +F +M +P+ IT ++
Sbjct: 1411 FDRMKEKNVKS----------WTAMVAGYGMHGRAKEALDIFYKMVRAG-VKPNYITFVS 1459
Query: 142 VLPAIWKNGEVRNC-----QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
VL A G V + H Y + G + C++D + + GC+ A L +
Sbjct: 1460 VLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHY-----GCMVDLFGRAGCLNEAYNLIK 1514
Query: 197 DTSVDRKNLVSWTTIISGFAMH 218
+ + + V W +++ +H
Sbjct: 1515 RMKM-KPDFVVWGSLLGACRIH 1535
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 33/130 (25%)
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEEC 259
VD+ N+ SW ++I+ A G EA+ F ++K+GL P RS F ++ C
Sbjct: 1102 VDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRS---------SFPCTIKSC 1152
Query: 260 EVLPDI-----KHY--------------GCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
L D+ H LID+ + G+L+ A + IP + NVV
Sbjct: 1153 SALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIP--LRNVVS 1210
Query: 301 WR---TGFLR 307
W TG+++
Sbjct: 1211 WTSMITGYVQ 1220
>gi|356559204|ref|XP_003547890.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 619
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 147/275 (53%), Gaps = 46/275 (16%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTGII 107
Y+ LG + + +LFD +P+R++++WN +++G + W G+I
Sbjct: 229 YIELGDMVAARELFDRMPDRDVMSWNTVLSGYATNGEVESFVKLFEEMPVRNVYSWNGLI 288
Query: 108 DGYSRMNRSNEALALFRRMAACEYTE----------PSEITILAVLPAIWKNGEVRNCQL 157
GY R EAL F+RM E P++ T++AVL A + G++ +
Sbjct: 289 GGYVRNGLFKEALECFKRMLVLVEGEGKEGSDGVVVPNDYTVVAVLTACSRLGDLEMGKW 348
Query: 158 IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAM 217
+H Y E G+ ++ V N LID YAKCG I A +F+ +D K++++W TII+G AM
Sbjct: 349 VHVYAESIGYKG-NLFVGNALIDMYAKCGVIEKALDVFD--GLDVKDIITWNTIINGLAM 405
Query: 218 HGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIK 266
HG +A+ FERM++ G +P+ +G GL F MV++ ++P I+
Sbjct: 406 HGHVADALSLFERMKRAGERPDGVTFVGILSACTHMGLVRNGLLHFQSMVDDYSIVPQIE 465
Query: 267 HYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
HYGC++D+L RAG +++A ++ +P + + V+W
Sbjct: 466 HYGCMVDLLGRAGLIDKAVDIVRKMPME-PDAVIW 499
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 16/218 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ +T ++ C L +G +H +G++ +++V AL DMY G ++ + +F
Sbjct: 326 NDYTVVAVLTACSRLGDLEMGKWVHVYAESIGYKGNLFVGNALIDMYAKCGVIEKALDVF 385
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D L ++++TWN II GL + D AL+LF RM P +T + +
Sbjct: 386 DGLDVKDIITWNTIINGLAMHGHVAD----------ALSLFERMKRAG-ERPDGVTFVGI 434
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAF-DIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G VRN L+H ++ I C++D + G I A + ++
Sbjct: 435 LSACTHMGLVRN-GLLHFQSMVDDYSIVPQIEHYGCMVDLLGRAGLIDKAVDIVRKMPME 493
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+ V W ++ M+ + A +R+ + L+PN
Sbjct: 494 -PDAVIWAALLGACRMYKNVEMAELALQRL--IELEPN 528
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/290 (22%), Positives = 121/290 (41%), Gaps = 48/290 (16%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKV---GFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP 86
L+RTC T +LH + +++ G + + YV + LG ++ + ++FD+
Sbjct: 28 LLRTCGTC------VRLHQIQAQIVTHGLEGNDYVTPSFITACARLGGIRRARRVFDKTA 81
Query: 87 ERNLVTWNVIITGLVKWTGIIDG---YSRMNRSNEALALF------RRMAACEYTEPSEI 137
+ N TWN + G + +D ++RM+R+ + F + A + E
Sbjct: 82 QPNGATWNAMFRGYAQANCHLDVVVLFARMHRAGASPNCFTFPMVVKSCATANAAKEGEE 141
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGF---NAFDIHVS---------NCLIDTYAKC 185
V +K+ C LIH Y + G +A+ + ++ + C
Sbjct: 142 VHCVVAKRGFKSNTFVGCALIHMYSLRGGVFVADAYKVFAEMRDKNVFAWTAIVAAHVAC 201
Query: 186 GCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---SW 242
+ SA +LF+ ++++V W ++SG+ G A E F+RM P+R SW
Sbjct: 202 RDMVSARRLFDLAP--QRDVVLWNVVVSGYIELGDMVAARELFDRM------PDRDVMSW 253
Query: 243 RIGEEG------LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
G ++ F K+ EE V ++ + LI R G ++A E
Sbjct: 254 NTVLSGYATNGEVESFVKLFEEMPV-RNVYSWNGLIGGYVRNGLFKEALE 302
>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic [Vitis vinifera]
Length = 658
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/301 (29%), Positives = 170/301 (56%), Gaps = 37/301 (12%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVT----LSYPNLGTQLHAVFSKVGFQSH 58
+Y+++ +I + S D FTY+++++ CV +S G ++H + GF+ H
Sbjct: 166 LYRRMNRIGVPS--------DRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGH 217
Query: 59 VYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNE 118
V++ T L DMY G + ++S++FD++P +N+V+W+ +I YS+ + E
Sbjct: 218 VHIMTTLLDMYARFGCVLNASRVFDQMPVKNVVSWSAMIA----------CYSKNGKPLE 267
Query: 119 ALALFRRMA-ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
AL LFR+M + P+ +T+++VL A + +L+HGY +RG ++ + V +
Sbjct: 268 ALELFRKMMLENQDLLPNSVTMVSVLQACAALAALEQGKLMHGYILRRGLDSI-LPVVSA 326
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
L+ YA+CG + ++FE ++++++VSW ++IS + +HG G++A++ F+ M GL
Sbjct: 327 LVTVYARCGNLELGHRVFE--RMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLS 384
Query: 238 PN-----------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
P+ + EEG F+ MV ++ P ++HY C++D+L RA RL++A +
Sbjct: 385 PSPISFVSVLGACSHAGLVEEGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAK 444
Query: 287 V 287
+
Sbjct: 445 I 445
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 114/239 (47%), Gaps = 25/239 (10%)
Query: 8 QQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGD 67
Q + + S P P TY LI +C + G LH G ++ T L +
Sbjct: 65 QALQVLSQEPNP---TQHTYELLILSCTRQNSLPQGIDLHRHLIHDGSDQDPFLATKLIN 121
Query: 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA 127
MY L + ++ K+FD+ +R + WN + L + GY R E L L+RRM
Sbjct: 122 MYSELDSIDNARKVFDKTRKRTIYVWNALFRALT-----LAGYGR-----EVLDLYRRMN 171
Query: 128 ACEYTEPSE-ITILAVLPAIWKNGE----VRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
PS+ T VL A + + N + IHG+ + GF +H+ L+D Y
Sbjct: 172 --RIGVPSDRFTYTYVLKACVASEAFVSLLLNGREIHGHILRHGFEGH-VHIMTTLLDMY 228
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM--QKVGLKPN 239
A+ GC+ +AS++F+ V KN+VSW+ +I+ ++ +G EA+E F +M + L PN
Sbjct: 229 ARFGCVLNASRVFDQMPV--KNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLPN 285
>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
Length = 615
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 156/296 (52%), Gaps = 30/296 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ F+++ C + + G Q+H K GF VYVN L +Y S G L + K+F
Sbjct: 127 DKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVF 186
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+PER+LV+WN +I LV R + AL LFR M EP T+ +V
Sbjct: 187 DEMPERSLVSWNSMIDALV----------RFGEYDSALQLFREMQ--RSFEPDGYTMQSV 234
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRG--FNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
L A G + H + ++ A D+ V N LI+ Y KCG + A ++F+ +
Sbjct: 235 LSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQ--GM 292
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERM--QKVGLKPNRSWRIG-----------EE 247
+++L SW +I GFA HG +EA+ F+RM ++ ++PN +G +
Sbjct: 293 QKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNK 352
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
G ++FD MV + + P ++HYGC++D++ RAG + +A ++ +P + + V+WR+
Sbjct: 353 GRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMK-PDAVIWRS 407
>gi|334185093|ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g05240
gi|332640689|gb|AEE74210.1| mitochondrial editing factor 19 [Arabidopsis thaliana]
Length = 565
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/263 (38%), Positives = 145/263 (55%), Gaps = 29/263 (11%)
Query: 51 SKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGY 110
SKVGF +V + T+L DMY G L+ + LFD +PER LV+WN IITG Y
Sbjct: 245 SKVGF--NVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITG----------Y 292
Query: 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF 170
S+ + EAL +F M P ++T L+V+ A G + Q IH Y K GF
Sbjct: 293 SQNGDAEEALCMFLDMLDLGIA-PDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGF-VK 350
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
D + L++ YAK G SA K FED +++K+ ++WT +I G A HG G EA+ F+R
Sbjct: 351 DAAIVCALVNMYAKTGDAESAKKAFED--LEKKDTIAWTVVIIGLASHGHGNEALSIFQR 408
Query: 231 MQKVG-LKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERA 278
MQ+ G P+ +G EEG ++F +M + + P ++HYGC++DIL RA
Sbjct: 409 MQEKGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRA 468
Query: 279 GRLEQAEEVASGIPSQITNVVVW 301
GR E+AE + +P + NV +W
Sbjct: 469 GRFEEAERLVKTMPVK-PNVNIW 490
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 128/240 (53%), Gaps = 25/240 (10%)
Query: 8 QQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGD 67
Q++ +SP D FT+ ++++ C L G+ +H K GF+ ++YV+T L
Sbjct: 96 QEMLRKGYSP-----DYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLH 150
Query: 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA 127
MY+ G + ++F+++P+ N+V W +I+G V NR ++A+ FR M
Sbjct: 151 MYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVN----------NNRFSDAIEAFREMQ 200
Query: 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN-------AFDIHVSNCLID 180
+ + +E ++ +L A + ++ + HG+ + GF+ F++ ++ LID
Sbjct: 201 S-NGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGFNVILATSLID 259
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
YAKCG + +A LF+ + + LVSW +II+G++ +G +EA+ F M +G+ P++
Sbjct: 260 MYAKCGDLRTARYLFD--GMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDK 317
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 19/218 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ +IR + LG +HA SK GF + AL +MY G + + K F
Sbjct: 316 DKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAF 375
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++L +++ + W V+I GL + NEAL++F+RM P IT L V
Sbjct: 376 EDLEKKDTIAWTVVIIGL----------ASHGHGNEALSIFQRMQEKGNATPDGITYLGV 425
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN--CLIDTYAKCGCIFSASKLFEDTSV 200
L A G V Q + E R + + V + C++D ++ G A +L + V
Sbjct: 426 LYACSHIGLVEEGQ--RYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPV 483
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
+ N+ W +++G +H E +E +R++ + +P
Sbjct: 484 -KPNVNIWGALLNGCDIH----ENLELTDRIRSMVAEP 516
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 4/139 (2%)
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
W +I GYS ++AL ++ M Y+ P T VL A +++ +HG+
Sbjct: 75 WNSMIRGYSNSPNPDKALIFYQEMLRKGYS-PDYFTFPYVLKACSGLRDIQFGSCVHGFV 133
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
K GF +++VS CL+ Y CG + ++FED + + N+V+W ++ISGF +
Sbjct: 134 VKTGFEV-NMYVSTCLLHMYMCCGEVNYGLRVFED--IPQWNVVAWGSLISGFVNNNRFS 190
Query: 223 EAVENFERMQKVGLKPNRS 241
+A+E F MQ G+K N +
Sbjct: 191 DAIEAFREMQSNGVKANET 209
>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Cucumis sativus]
Length = 624
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/312 (30%), Positives = 165/312 (52%), Gaps = 34/312 (10%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
F ++++L + S +PL D ++ +IR C L G +H + K G +
Sbjct: 136 FWMFREL----LRSGAPL----DDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHF 187
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
V L DMY ++D+ ++F ++ +R+L TW V+I L + +G+ E+L
Sbjct: 188 VCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAE-SGV---------PVESL 237
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
F RM + P ++ ++ V+ A K G + + IH Y G+ + D+ + +ID
Sbjct: 238 VFFDRMRN-QGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGY-SLDVILGTAMID 295
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
YAKCG + SA +F+ V +N+++W+ +I+ + HG G++A+E F M + G+ PNR
Sbjct: 296 MYAKCGSVESARWIFDRMQV--RNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNR 353
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
+ EEG +FF M +E V PD+KHY C++D+L RAGRL++A E+
Sbjct: 354 ITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIE 413
Query: 290 GIPSQITNVVVW 301
G+P + + V+W
Sbjct: 414 GMPVE-KDEVLW 424
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 122/272 (44%), Gaps = 36/272 (13%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
Q+HA + G ++ V L MYV G L+D+ +LFD + +R+ +W+V
Sbjct: 71 QVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSV--------- 121
Query: 105 GIIDGYSRMNRSNEALALFRRMAAC-----EYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
I+ GY+++ +FR + +Y+ P V+ A +++ +LIH
Sbjct: 122 -IVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAP------VVIRACRDLKDLKCGRLIH 174
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
K G + + V L+D YA+C + A ++F + +++L +WT +I A G
Sbjct: 175 CITLKCGLD-YGHFVCATLVDMYARCKVVEDAHQIF--VKMWKRDLATWTVMIGALAESG 231
Query: 220 MGKEAVENFERMQKVGLKPNR---------SWRIGE-EGLKFFDKMVEECEVLPDIKHYG 269
+ E++ F+RM+ G+ P++ ++G K + D+
Sbjct: 232 VPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGT 291
Query: 270 CLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ID+ + G +E A + + Q+ NV+ W
Sbjct: 292 AMIDMYAKCGSVESARWIFDRM--QVRNVITW 321
>gi|326491225|dbj|BAK05712.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 538
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 150/276 (54%), Gaps = 29/276 (10%)
Query: 42 LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL-PERNLVTWNVIITGL 100
L ++H + G V AL DMY G + + F + P +NLVTWN +I+
Sbjct: 182 LAREVHRRVLEAGVALDVVACNALVDMYAKCGDSAAALRCFRTMVPTKNLVTWNTMISA- 240
Query: 101 VKWTGIIDGYSRMNRSNEALALFRRM---AACEYTE-PSEITILAVLPAIWKNGEVRNCQ 156
++R EAL LFR M C + P + T +AVL A + G + +
Sbjct: 241 ---------HARAGELQEALELFREMLQQQGCTSSPLPDDATFVAVLGACARLGALDAGR 291
Query: 157 LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFA 216
+H Y + G +A V N LID YAKCG + A+++F+ ++ R+++ ++T++ISG A
Sbjct: 292 WVHAYIVRTGRDAAAGVVGNALIDMYAKCGAVEQAAEVFD--AMTRRDVYTYTSMISGLA 349
Query: 217 MHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDI 265
MHG G+EA+ F M++ ++PN +G E+GL+ FD M E V P I
Sbjct: 350 MHGRGEEALALFGDMRQARVRPNEVTFLGVLSACCHAGNIEDGLRHFDAMAELHGVTPGI 409
Query: 266 KHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+HYGC++D+L RAGRL++AEE+ S +P + + ++W
Sbjct: 410 EHYGCVVDMLGRAGRLDEAEELVSVMPIR-PDAIIW 444
>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 722
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 160/319 (50%), Gaps = 39/319 (12%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSK--VGFQSHVYVNTALGDMYVSLGFLKDS 78
L D FT+ L C L+ PN+G Q+HA K S++ + +A+ DMY G + +
Sbjct: 209 LPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIA 268
Query: 79 SKLFDEL-PERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRS 116
++F + ++ W+ ++ G ++ WT +I GYS+ +
Sbjct: 269 ERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQC 328
Query: 117 NEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVR-NCQLIHGYGEKRGFNAFDIHVS 175
+EAL LF+ M A +P E+T++AVL A + G +L H Y E FN I ++
Sbjct: 329 SEALELFKEMEALG-IKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTI-LT 386
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
++D YAKCG I SA ++F + K + ++I+G A HG+G+ A+ F + G
Sbjct: 387 AAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTG 446
Query: 236 LKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
LKP+ +G EEG K F+ M + P ++HYGC++D+L R G LE+A
Sbjct: 447 LKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEA 506
Query: 285 EEVASGIPSQITNVVVWRT 303
++ +P + N V+WR
Sbjct: 507 YDLVQKMPFE-ANSVIWRA 524
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 143/312 (45%), Gaps = 57/312 (18%)
Query: 19 PPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
PP ++FT+ FL+ +C LS G ++H+ K GF+S ++V AL +Y G L +
Sbjct: 108 PP--NNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLA 165
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
LFDE R+LV++N +I GY+ +N+ AL LF M P E T
Sbjct: 166 RTLFDESLVRDLVSYNTMIK----------GYAEVNQPESALCLFGEMQNSGIL-PDEFT 214
Query: 139 ILAVLPAIWKNGEVRNCQLIHG--YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
+A+ E + IH Y R ++ +I + + ++D YAKCG I A ++F
Sbjct: 215 FVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDS-NILLKSAIVDMYAKCGLINIAERVFS 273
Query: 197 ----------------------DTSVDRK--------NLVSWTTIISGFAMHGMGKEAVE 226
+ +V RK +++SWT +ISG++ G EA+E
Sbjct: 274 TMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALE 333
Query: 227 NFERMQKVGLKPNR---------SWRIG--EEGLKFFDKMVEECEVLPDIKHYGCLIDIL 275
F+ M+ +G+KP+ R+G + G + + + +E + ++D+
Sbjct: 334 LFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMY 393
Query: 276 ERAGRLEQAEEV 287
+ G ++ A E+
Sbjct: 394 AKCGSIDSALEI 405
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 91/200 (45%), Gaps = 16/200 (8%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF---LKDSSKLFDELPERNLVTWNVIITG 99
G Q+HA G ++ + L + LG L S LF ++ NL WN +I
Sbjct: 25 GLQIHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMI-- 82
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
GYSR + EA+ L+ M A P+ T +L + + + +H
Sbjct: 83 --------RGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVH 134
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
+ K GF + D+ V N LI Y+ G + A LF+++ V ++LVS+ T+I G+A
Sbjct: 135 SHIIKHGFES-DLFVRNALIHLYSVFGNLNLARTLFDESLV--RDLVSYNTMIKGYAEVN 191
Query: 220 MGKEAVENFERMQKVGLKPN 239
+ A+ F MQ G+ P+
Sbjct: 192 QPESALCLFGEMQNSGILPD 211
>gi|297851626|ref|XP_002893694.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297339536|gb|EFH69953.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 607
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 156/292 (53%), Gaps = 25/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FTY L++ C L G Q+H K+G ++ V+V +L +MY G ++ SS +F
Sbjct: 132 DNFTYPCLLKACTRLKAIREGKQIHGHVFKLGLEADVFVQNSLINMYGRCGEMELSSTVF 191
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++L ++ +W+ + + V M +E L LFR M + E +++
Sbjct: 192 EKLEFKSAASWSSMFSACVG----------MGMWSECLMLFREMCRETNLKAEESGMVSA 241
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + IHG+ R + +I V L+D Y KCGCI +A +F+ +++
Sbjct: 242 LSACANTGALNLGMSIHGF-LLRNISELNIIVKTSLVDMYVKCGCIDNALHIFQ--KMEK 298
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+N ++++ +ISGFA+HG G+ A+ F M K GL+P+ + +EG +
Sbjct: 299 RNNLTYSAMISGFALHGEGESALRMFSEMIKEGLEPDHVVYVSLLNACSHSGLVKEGRRV 358
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F +M++E +V P +HYGCL+D+L RAG LE+A E IP + N VVWR+
Sbjct: 359 FGEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIE-QNDVVWRS 409
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 5/137 (3%)
Query: 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
+I GY AL + M EP T +L A + +R + IHG+ K
Sbjct: 104 MIRGYVNEMSFEVALCFYNEMME-RGIEPDNFTYPCLLKACTRLKAIREGKQIHGHVFKL 162
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225
G A D+ V N LI+ Y +CG + +S +FE ++ K+ SW+++ S GM E +
Sbjct: 163 GLEA-DVFVQNSLINMYGRCGEMELSSTVFE--KLEFKSAASWSSMFSACVGMGMWSECL 219
Query: 226 ENFERM-QKVGLKPNRS 241
F M ++ LK S
Sbjct: 220 MLFREMCRETNLKAEES 236
>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 591
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 151/277 (54%), Gaps = 26/277 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSK-VGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D T ++ C L NLG ++H+ + ++ V+V AL DMY+ L + K+
Sbjct: 211 DGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKV 270
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FDE+P +N+VTWN +I+GL + R EAL FR M + +P E+T++
Sbjct: 271 FDEMPVKNVVTWNAMISGL----------AYQGRYREALDTFRMMQD-KGVKPDEVTLVG 319
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL + G + + +H Y + A D V N L+D YAKCG I A ++FE S+
Sbjct: 320 VLNSCANLGVLEIGKWVHAYMRRNHILA-DKFVGNALLDMYAKCGSIDEAFRVFE--SMK 376
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
R+++ S+T +I G A+HG A + F M +VG++PN +G EG K
Sbjct: 377 RRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKK 436
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+F +M ++ ++ P +HYGC+ID+L RAG +++AEE+
Sbjct: 437 YFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEI 473
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 127/277 (45%), Gaps = 26/277 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSSKL 81
D FT +++ + G Q+HA K G +VYV+ L +Y G + D K+
Sbjct: 109 DGFTIPLVLKALALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKV 168
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FDE P R+LV+W +I K G+ YSR A+ F M T++
Sbjct: 169 FDECPHRDLVSWTTLIQAFTK-AGL---YSR------AVEAFMEMCDLRLRADGR-TLVV 217
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL A G++ Q +H Y D+ V N L+D Y KC + SA K+F++ V
Sbjct: 218 VLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPV- 276
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
KN+V+W +ISG A G +EA++ F MQ G+KP+ +G E G K
Sbjct: 277 -KNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIG-K 334
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ + +L D L+D+ + G +++A V
Sbjct: 335 WVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRV 371
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 82/180 (45%), Gaps = 15/180 (8%)
Query: 133 EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSAS 192
EP TI VL A+ +R Q IH K G F+++VSN L+ Y+ CG I
Sbjct: 107 EPDGFTIPLVLKALALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQ 166
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-RSWRIGEEGLKF 251
K+F++ ++LVSWTT+I F G+ AVE F M + L+ + R+ +
Sbjct: 167 KVFDECP--HRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSACSN 224
Query: 252 FDKMVEECEVLPDIKHY----------GCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ +V I+HY L+D+ + L A +V +P + NVV W
Sbjct: 225 LGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMP--VKNVVTW 282
>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 801
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 153/290 (52%), Gaps = 26/290 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T L++ C T LG LHA + GF + + TA DMY G ++ + +F
Sbjct: 327 NEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVF 386
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D ++L+ W+ +I+ Y++ N +EA +F M C P+E T++++
Sbjct: 387 DSFKSKDLMMWSAMISS----------YAQNNCIDEAFDIFVHMTGCG-IRPNERTMVSL 435
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L K G + + IH Y +K+G D+ + +D YA CG I +A +LF + + DR
Sbjct: 436 LMICAKAGSLEMGKWIHSYIDKQGIKG-DMILKTSFVDMYANCGDIDTAHRLFAEAT-DR 493
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
++ W +ISGFAMHG G+ A+E FE M+ +G+ PN IG +EG +
Sbjct: 494 -DISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRL 552
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F KMV E P ++HYGC++D+L RAG L++A E+ +P + N+ V+
Sbjct: 553 FHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMR-PNIAVF 601
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 125/273 (45%), Gaps = 42/273 (15%)
Query: 42 LGTQLHAVFSKVG--FQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG 99
LG +HA + G +S V + TAL DMYV L + ++FD L + ++++W
Sbjct: 243 LGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISW------ 296
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
T +I Y N NE + LF +M E P+EIT+L+++ G + +L+H
Sbjct: 297 ----TAMIAAYIHCNNLNEGVRLFVKMLG-EGMFPNEITMLSLVKECGTAGALELGKLLH 351
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
+ + GF + ++ ID Y KCG + SA +F+ S K+L+ W+ +IS +A +
Sbjct: 352 AFTLRNGFT-LSLVLATAFIDMYGKCGDVRSARSVFD--SFKSKDLMMWSAMISSYAQNN 408
Query: 220 MGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
EA + F M G++PN + L+ I +AG
Sbjct: 409 CIDEAFDIFVHMTGCGIRPNERTMVS-------------------------LLMICAKAG 443
Query: 280 RLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLIN 311
LE + + S I Q I ++ +T F+ + N
Sbjct: 444 SLEMGKWIHSYIDKQGIKGDMILKTSFVDMYAN 476
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 105/219 (47%), Gaps = 14/219 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+F +++ C + LG ++H K GF V+V AL MY +G L + LF
Sbjct: 123 DNFVIPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLF 182
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++ +++V+W+ +I Y R +EAL L R M +PSEI ++++
Sbjct: 183 DKIENKDVVSWSTMIR----------SYDRSGLLDEALDLLRDMHVMR-VKPSEIGMISI 231
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRG-FNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+ + +++ + +H Y + G + + LID Y KC + A ++F+ S
Sbjct: 232 THVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLS-- 289
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+ +++SWT +I+ + E V F +M G+ PN
Sbjct: 290 KASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNE 328
>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
Length = 606
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 153/292 (52%), Gaps = 27/292 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++T+ L++ C G Q HA+ K+G H YV L +MY G + + +F
Sbjct: 132 DTYTFVSLLKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMF 191
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+V++N +I V R +R EAL LFR M + +P+ +T+++V
Sbjct: 192 GGTDGGCVVSYNAMIAAAV----------RSSRPGEALVLFREMQG-KGLKPTSVTVISV 240
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + + +H Y K G + + VS LID YAKCG + A +F+ ++
Sbjct: 241 LSACALLGALELGRWVHDYVRKIGLGSL-VKVSTALIDMYAKCGSLEDAIDVFQ--GMES 297
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
K+ +W+ +I +A HG G+EA+ FE M+K G+KP+ +G EGL++
Sbjct: 298 KDRQAWSVMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLYACSHSGLVSEGLQY 357
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
FD M + ++P IKHYGC+ D+L R+G+LE+A + +P T ++WRT
Sbjct: 358 FDDMKDH-GIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTP-ILWRT 407
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 94/221 (42%), Gaps = 33/221 (14%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
S T ++ C L LG +H K+G S V V+TAL DMY G L+D+ +F
Sbjct: 234 SVTVISVLSACALLGALELGRWVHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQ 293
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
+ ++ W+V+I GY R EA++LF M E +P +IT L VL
Sbjct: 294 GMESKDRQAWSVMIVAYAN-----HGYGR-----EAISLFEEMKK-EGMKPDDITFLGVL 342
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNAFD----------IHVSNCLIDTYAKCGCIFSASK 193
A +G V G FD I C+ D A+ G + A K
Sbjct: 343 YACSHSGLV-----------SEGLQYFDDMKDHGIVPGIKHYGCVTDLLARSGQLERAYK 391
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
++ ++ ++ W T++S HG + FER+ K+
Sbjct: 392 FIDELPINPTPIL-WRTLLSACGGHGDFELGKRVFERILKL 431
>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
[Vitis vinifera]
Length = 807
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/284 (33%), Positives = 152/284 (53%), Gaps = 27/284 (9%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L DS ++R C +L+ G Q+H + +K+GF S V+V +AL D+Y + S K
Sbjct: 415 LADSGILVAVLRACSSLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDMGYSKK 474
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F L +++LV+WN +I+ GY++ ++EAL FR M E P+ +TI
Sbjct: 475 VFLRLSQKDLVSWNALIS----------GYAQDECADEALKAFRDMQL-EEIRPNTVTIA 523
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+L + C+ +HGY ++G + + VSN LI TYAKCG I S+ FE +
Sbjct: 524 CILSVCAHLSVMTLCKEVHGYLIRQGLGS-TVLVSNSLIATYAKCGDINSSLYTFE--KM 580
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN------------RSWRIGEEG 248
+N VSW +II G MH E + F++M G+KP+ + R+ +EG
Sbjct: 581 PERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIKPDHVTFTAILSACSHAGRV-DEG 639
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
K+F MVE+ + P ++ Y C++D+L RAG L QA ++ +P
Sbjct: 640 CKYFKSMVEDFNLKPQLEQYTCMVDLLGRAGHLNQAYDLIMAMP 683
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 102/202 (50%), Gaps = 14/202 (6%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G Q+H K+G V V +L MY G ++D+ ++F+++PE +LV+WN +I+G K
Sbjct: 128 GRQIHGHVLKLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQK 187
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
Y+R +L FR M P+ + ++ + + + + + IHG
Sbjct: 188 SM----DYTR------SLMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVV 237
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE---DTSVDRKNLVSWTTIISGFAMHG 219
K G + + VS+ LI+ Y KCG I +A +F D R+N V W +ISG+ +G
Sbjct: 238 VKSGLDVEEYLVSS-LIEMYMKCGSIKNAENIFNSILDKDSVRRNAVIWNVMISGYVSNG 296
Query: 220 MGKEAVENFERMQKVGLKPNRS 241
+A+ F +M G+KP+ S
Sbjct: 297 CFSQALLLFIKMMVWGIKPDYS 318
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 96/197 (48%), Gaps = 14/197 (7%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G Q+H + K G ++++ V TAL DMY+ G + K+F NL+ W+ +I+
Sbjct: 336 GKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVISNC-- 393
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
++ +AL LF + S I ++AVL A IHG
Sbjct: 394 --------AQSGCPTKALELFYEFKMEDGLADSGI-LVAVLRACSSLTLKPEGMQIHGLA 444
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
K GF + D+ V + L+D YAKC + + K+F + +K+LVSW +ISG+A
Sbjct: 445 TKMGFVS-DVFVGSALVDLYAKCRDMGYSKKVF--LRLSQKDLVSWNALISGYAQDECAD 501
Query: 223 EAVENFERMQKVGLKPN 239
EA++ F MQ ++PN
Sbjct: 502 EALKAFRDMQLEEIRPN 518
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 98/198 (49%), Gaps = 9/198 (4%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
I +C +L G ++H V K G Y+ ++L +MY+ G +K++ +F+ + +++
Sbjct: 218 ILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAENIFNSILDKDS 277
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
V N +I W +I GY ++AL LF +M +P T++++ ++
Sbjct: 278 VRRNAVI-----WNVMISGYVSNGCFSQALLLFIKMMVWG-IKPDYSTMVSLFSLCSESL 331
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
++ + IHG K G +I V L+D Y KCG + + K+F + NL+ W+
Sbjct: 332 DIAFGKQIHGLIFKFGLKN-NIRVETALLDMYLKCGDMGTGLKIFRRSQ--NHNLIMWSA 388
Query: 211 IISGFAMHGMGKEAVENF 228
+IS A G +A+E F
Sbjct: 389 VISNCAQSGCPTKALELF 406
>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g46790, chloroplastic; AltName: Full=Protein
CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 657
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 159/288 (55%), Gaps = 29/288 (10%)
Query: 23 DSFTYSFLIRTCV----TLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
D FTY+++++ CV T+++ G ++HA ++ G+ SHVY+ T L DMY G + +
Sbjct: 177 DRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYA 236
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA-ACEYTEPSEI 137
S +F +P RN+V+W+ +I Y++ ++ EAL FR M + + P+ +
Sbjct: 237 SYVFGGMPVRNVVSWSAMIA----------CYAKNGKAFEALRTFREMMRETKDSSPNSV 286
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
T+++VL A + +LIHGY +RG ++ + V + L+ Y +CG + ++F D
Sbjct: 287 TMVSVLQACASLAALEQGKLIHGYILRRGLDSI-LPVISALVTMYGRCGKLEVGQRVF-D 344
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------E 246
DR ++VSW ++IS + +HG GK+A++ FE M G P + E
Sbjct: 345 RMHDR-DVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVE 403
Query: 247 EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
EG + F+ M + + P I+HY C++D+L RA RL++A ++ + ++
Sbjct: 404 EGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTE 451
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 95/211 (45%), Gaps = 16/211 (7%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
TY LI C S + ++H G ++ T L MY LG + + K+FD+
Sbjct: 79 TYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKT 138
Query: 86 PERNLVTWNVIITGLV---KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+R + WN + L ++ Y +MNR F + SE T+ +
Sbjct: 139 RKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHL 198
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ + IH + +RG+++ +++ L+D YA+ GC+ AS +F V
Sbjct: 199 MKG----------KEIHAHLTRRGYSSH-VYIMTTLVDMYARFGCVDYASYVFGGMPV-- 245
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
+N+VSW+ +I+ +A +G EA+ F M +
Sbjct: 246 RNVVSWSAMIACYAKNGKAFEALRTFREMMR 276
>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 617
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 153/282 (54%), Gaps = 26/282 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHA-VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D T ++ +C L LG +LH + V+V AL DMY+ G + K+
Sbjct: 225 DGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKV 284
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F E+P +N+V+WN +I+GL ++ + E+L +FR+M +P ++T++A
Sbjct: 285 FQEMPVKNVVSWNSMISGL----------AQKGQFKESLYMFRKMQRLG-VKPDDVTLVA 333
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL + G + + +H Y ++ A D + N L+D YAKCG I A +F+ +++
Sbjct: 334 VLNSCANLGVLELGKWVHAYLDRNQIRA-DGFIGNALVDMYAKCGSIDQACWVFQ--AMN 390
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
RK++ S+T +I G AMHG G +A++ F M K+G++P+ +G EEG K
Sbjct: 391 RKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEGRK 450
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+F+ M + P ++HYGC++D+L RAG + +AEE +P
Sbjct: 451 YFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMP 492
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 126/239 (52%), Gaps = 21/239 (8%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
+VYKQ+ S +P D++T F+++ C G ++H K+G S VY
Sbjct: 110 LVVYKQML-----SKGIVP---DNYTIPFVLKACAESRAVREGEEVHGQAIKMGLASDVY 161
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
V+ L MY ++ + K+FD P+R+LV+ WT +I GY +M + E +
Sbjct: 162 VSNTLMRMYAVCDVIRSARKVFDTSPQRDLVS----------WTTMIQGYVKMGFAREGV 211
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LF M E + +T++ VL + + G++R + +H Y + D+ V N L+D
Sbjct: 212 GLFFEMCG-ENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGNALVD 270
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
Y KCG A K+F++ V KN+VSW ++ISG A G KE++ F +MQ++G+KP+
Sbjct: 271 MYLKCGDANFARKVFQEMPV--KNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKPD 327
>gi|356541012|ref|XP_003538978.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g50270-like [Glycine max]
Length = 560
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 150/282 (53%), Gaps = 26/282 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVSLGFLKDSSKL 81
D+ T + ++R + + G +H + + G Q YV +AL DMY G +D+ K+
Sbjct: 207 DAVTVASILRAAALVGDADFGRWVHGFYVEAGRVQLDGYVFSALMDMYFKCGHCEDACKV 266
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+ELP R++V W V++ G Y + N+ +AL F M + + P++ T+ +
Sbjct: 267 FNELPHRDVVCWTVLVAG----------YVQSNKFQDALRAFWDMLS-DNVAPNDFTLSS 315
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL A + G + +L+H Y E N ++ + L+D YAKCG I A ++FE+ V
Sbjct: 316 VLSACAQMGALDQGRLVHQYIECNKIN-MNVTLGTALVDMYAKCGSIDEALRVFENMPV- 373
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
KN+ +WT II+G A+HG A+ F M K G++PN +G EEG +
Sbjct: 374 -KNVYTWTVIINGLAVHGDALGALNIFCCMLKSGIQPNEVTFVGVLAACSHGGFVEEGKR 432
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
F+ M + P++ HYGC++D+L RAG LE A+++ +P
Sbjct: 433 LFELMKHAYHLKPEMDHYGCMVDMLGRAGYLEDAKQIIDNMP 474
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/312 (22%), Positives = 145/312 (46%), Gaps = 36/312 (11%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
L Y +L+Q + D T+ L++T + S ++A K+GF ++
Sbjct: 93 LLCYAKLRQKGVQP--------DKHTFPLLLKT-FSKSIAQNPFMIYAQIFKLGFDLDLF 143
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
+ AL + + GF++ + ++FDE P ++ V W +I +GY + + EAL
Sbjct: 144 IGNALIPAFANSGFVESARQVFDESPFQDTVAWTALI----------NGYVKNDCPGEAL 193
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
F +M + + + +T+ ++L A G+ + +HG+ + G D +V + L+D
Sbjct: 194 KCFVKMRLRDRSVDA-VTVASILRAAALVGDADFGRWVHGFYVEAGRVQLDGYVFSALMD 252
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN- 239
Y KCG A K+F + + +++V WT +++G+ ++A+ F M + PN
Sbjct: 253 MYFKCGHCEDACKVFNE--LPHRDVVCWTVLVAGYVQSNKFQDALRAFWDMLSDNVAPND 310
Query: 240 --------RSWRIG--EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
++G ++G + + +E ++ ++ L+D+ + G +++A V
Sbjct: 311 FTLSSVLSACAQMGALDQG-RLVHQYIECNKINMNVTLGTALVDMYAKCGSIDEALRVFE 369
Query: 290 GIPSQITNVVVW 301
+P + NV W
Sbjct: 370 NMP--VKNVYTW 379
>gi|356553601|ref|XP_003545143.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Glycine max]
Length = 534
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 156/309 (50%), Gaps = 37/309 (11%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
TY + + L G QLH K+G + ++ + MY + G L ++ ++FDE
Sbjct: 125 LTYPSVFKAYAQLGAGYDGAQLHGRVVKLGLEKDQFIQNTIIYMYANSGLLSEARRVFDE 184
Query: 85 LPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALALF 123
L + ++V N +I GL K W +I GY R R EAL LF
Sbjct: 185 LVDLDVVACNSMIMGLAKCGEVDKSRRLFDNMPTRTRVTWNSMISGYVRNKRLMEALELF 244
Query: 124 RRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183
R+M E EPSE T++++L A G +++ + +H Y KRG ++ V +ID Y
Sbjct: 245 RKMQG-ERVEPSEFTMVSLLSACAHLGALKHGEWVHDY-VKRGHFELNVIVLTAIIDMYC 302
Query: 184 KCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWR 243
KCG I A ++FE + + L W +II G A++G ++A+E F +++ LKP+
Sbjct: 303 KCGVIVKAIEVFEASPT--RGLSCWNSIIIGLALNGYERKAIEYFSKLEASDLKPDHVSF 360
Query: 244 IG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
IG + +F M+ + E+ P IKHY C++++L +A LE+AE++ G+P
Sbjct: 361 IGVLTACKYIGAVGKARDYFSLMMNKYEIEPSIKHYTCMVEVLGQAALLEEAEQLIKGMP 420
Query: 293 SQITNVVVW 301
+ + ++W
Sbjct: 421 LK-ADFIIW 428
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 91/204 (44%), Gaps = 30/204 (14%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
FT L+ C L G +H + F+ +V V TA+ DMY G + + ++F+
Sbjct: 257 FTMVSLLSACAHLGALKHGEWVHDYVKRGHFELNVIVLTAIIDMYCKCGVIVKAIEVFEA 316
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
P R L WN II GL ++GY R +A+ F ++ A + +P ++ + VL
Sbjct: 317 SPTRGLSCWNSIIIGLA-----LNGYER-----KAIEYFSKLEASDL-KPDHVSFIGVLT 365
Query: 145 AIWKNGEVRNCQLIHGYGEKRGF-----NAFDIHVS----NCLIDTYAKCGCIFSASKLF 195
A C+ I G+ R + N ++I S C+++ + + A +L
Sbjct: 366 A---------CKYIGAVGKARDYFSLMMNKYEIEPSIKHYTCMVEVLGQAALLEEAEQLI 416
Query: 196 EDTSVDRKNLVSWTTIISGFAMHG 219
+ + + + + W +++S HG
Sbjct: 417 KGMPL-KADFIIWGSLLSSCRKHG 439
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 71/319 (22%), Positives = 121/319 (37%), Gaps = 74/319 (23%)
Query: 45 QLHAVFSKVGFQSH-VYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKW 103
++HA K G H V + L S G + + LF +P NL WN II
Sbjct: 43 KIHAHIIKTGLAHHTVAASRVLTFCASSSGDINYAYLLFTTIPSPNLYCWNTIIR----- 97
Query: 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGE 163
G+SR + + A++LF M C P +T +V A + G + +HG
Sbjct: 98 -----GFSRSSTPHLAISLFVDM-LCSSVLPQRLTYPSVFKAYAQLGAGYDGAQLHGRVV 151
Query: 164 KRGFNA------------------------------FDIHVSNCLIDTYAKCGCIFSASK 193
K G D+ N +I AKCG + + +
Sbjct: 152 KLGLEKDQFIQNTIIYMYANSGLLSEARRVFDELVDLDVVACNSMIMGLAKCGEVDKSRR 211
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFD 253
LF++ + + V+W ++ISG+ + EA+E F +MQ ++P+ +
Sbjct: 212 LFDN--MPTRTRVTWNSMISGYVRNKRLMEALELFRKMQGERVEPSEFTMVS-------- 261
Query: 254 KMVEECEVLPDIKH-------------------YGCLIDILERAGRLEQAEEVASGIPSQ 294
++ C L +KH +ID+ + G + +A EV P++
Sbjct: 262 -LLSACAHLGALKHGEWVHDYVKRGHFELNVIVLTAIIDMYCKCGVIVKAIEVFEASPTR 320
Query: 295 ITNVVVWRTGFLRLLINSY 313
+ W + + L +N Y
Sbjct: 321 --GLSCWNSIIIGLALNGY 337
>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like, partial [Brachypodium distachyon]
Length = 745
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 147/293 (50%), Gaps = 26/293 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD T + C L NLG + + G + TAL DMY G L + +L
Sbjct: 270 FDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRL 329
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + R++V W+ +I+G Y++ +R EALA+F M E P+++T+++
Sbjct: 330 FDRMHSRDVVAWSAMISG----------YTQSDRCREALAIFNEMQGTE-VNPNDVTMVS 378
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL A G + + +H Y ++ + + L+D YAKCGCI A K FE V
Sbjct: 379 VLSACAVLGALETGKWVHSYIRRKDL-PLTVILGTALVDFYAKCGCIKDAVKAFESMPV- 436
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
+N +WT +I G A +G +EA+E F M + ++P IG EEG +
Sbjct: 437 -RNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRR 495
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F M ++ + P I+HYGC++D+L RAG +++A + +P + N VVWR
Sbjct: 496 HFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIE-PNAVVWRA 547
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 106/220 (48%), Gaps = 20/220 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + +++C + ++G + A K GF +V +L MY S G + + LF
Sbjct: 170 DQHTVANTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLF 229
Query: 83 DELPERNLVTWNVIITGLVK---WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
+ + ++ WN +I G VK W +++ + M E A F E+T+
Sbjct: 230 HTVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGM---LEVRAPF-----------DEVTL 275
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
L+V A + G+ Q I Y E++G +++ L+D YAKCG + A +LF+
Sbjct: 276 LSVATACGRLGDANLGQWIAEYAEEKGM-LRSRNLATALVDMYAKCGELDKARRLFD--R 332
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+ +++V+W+ +ISG+ +EA+ F MQ + PN
Sbjct: 333 MHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPN 372
>gi|125546973|gb|EAY92795.1| hypothetical protein OsI_14599 [Oryza sativa Indica Group]
Length = 530
Score = 155 bits (393), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/296 (32%), Positives = 148/296 (50%), Gaps = 39/296 (13%)
Query: 41 NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVII--- 97
N G +HA+ G V+V+T L +Y G L S ++FD++P R+ +TWN ++
Sbjct: 132 NPGKMIHALVVTSGIVPDVFVSTELIRVYGESGELPVSRRVFDDMPSRSTITWNAMLHQY 191
Query: 98 ------------------TGLVKWTGIIDGYSRMNRSNEALALFRRM---AACEYTEPSE 136
+V W ++ GY R EAL LFR+M ++C P+
Sbjct: 192 ARHGKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCA-VHPNV 250
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
T+ +L A G + +H Y E+ N D ++ CLID Y KCG I +A ++FE
Sbjct: 251 PTMSTILGACAGAGCLETGIWVHAYIERNRMND-DGYLDRCLIDMYCKCGSIDNALQVFE 309
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG----------- 245
+K+L SWTT+I G AMHG +A+ F+ MQ G+ P+ +G
Sbjct: 310 KAP-RKKDLFSWTTVICGLAMHGRTTDALRMFDMMQDNGICPDDVTLVGVLNACAHGGLV 368
Query: 246 EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+EGL +F M + + P I+HYGC+ID+L R GRL++A + +P N V+W
Sbjct: 369 DEGLGYFYSMEAKFRITPKIEHYGCMIDLLGRIGRLQEAYSMIRTMPMD-PNTVIW 423
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 125/298 (41%), Gaps = 33/298 (11%)
Query: 44 TQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
+ +H + K G ++ TAL Y +LG + +LFDE+PE+ GLV
Sbjct: 29 SSIHCLLLKAGLLHVGAHLPTALLSAYAALGSPDHARRLFDEMPEQ----------GLVP 78
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGE---VRN-CQLI 158
T + + ++ +A+A+F M A + P + + L A G RN ++I
Sbjct: 79 RTAMARAHVASGQAAQAIAVFGDMVA-DGVFPDNVAVAVALGACHGAGSWTARRNPGKMI 137
Query: 159 HGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218
H G D+ VS LI Y + G + + ++F+D + ++ ++W ++ +A H
Sbjct: 138 HALVVTSGI-VPDVFVSTELIRVYGESGELPVSRRVFDD--MPSRSTITWNAMLHQYARH 194
Query: 219 GMGKEAVENFERMQKVGLKPNRSWRIG-------EEGLKFFDKMV--EECEVLPDIKHYG 269
G A E F M + + + G E L F +MV C V P++
Sbjct: 195 GKVDTAYEMFLAMPRRDVVSWNTVLAGYCVAGRCREALGLFRQMVSPSSCAVHPNVPTMS 254
Query: 270 CLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFL-RLLINSYFFSPITLNSQRLF 326
++ AG LE V + I N G+L R LI+ Y N+ ++F
Sbjct: 255 TILGACAGAGCLETGIWVHAYIERNRMN----DDGYLDRCLIDMYCKCGSIDNALQVF 308
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 90/224 (40%), Gaps = 27/224 (12%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T S ++ C G +HA + Y++ L DMY G + ++ ++F++
Sbjct: 252 TMSTILGACAGAGCLETGIWVHAYIERNRMNDDGYLDRCLIDMYCKCGSIDNALQVFEKA 311
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM---AACEYTEPSEITILAV 142
P + L WT +I G + R+ +AL +F M C P ++T++ V
Sbjct: 312 PRKK---------DLFSWTTVICGLAMHGRTTDALRMFDMMQDNGIC----PDDVTLVGV 358
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFN-AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G V L + Y + F I C+ID + G + A + +D
Sbjct: 359 LNACAHGGLVDE-GLGYFYSMEAKFRITPKIEHYGCMIDLLGRIGRLQEAYSMIRTMPMD 417
Query: 202 RKNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKPNRSW 242
N V W +S +HG +GK A E R L P+ W
Sbjct: 418 -PNTVIWGAFLSACKVHGNMELGKIAAEELTR-----LDPDDPW 455
>gi|357153087|ref|XP_003576334.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g18840-like [Brachypodium distachyon]
Length = 531
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 160/323 (49%), Gaps = 71/323 (21%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG--- 99
G +LH K+G YV AL MY LG L D+ K+FD +P RN V+WN ++
Sbjct: 144 GMELHGRVLKLGCGGDRYVQNALVSMYGKLGRLGDARKVFDGMPARNAVSWNALVAAHGA 203
Query: 100 -------------------------------------------------LVKWTGIIDGY 110
V W +I GY
Sbjct: 204 TGDLHGVELLSREMPERSVSWWNAEITRHARVGDMEAAARVFREMPGRDAVSWNSLIGGY 263
Query: 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF 170
+++ R +AL +FR M EP+E+T+++VL A + GE+ + +HGY +G A
Sbjct: 264 TKLGRYVQALEVFREMQD-SGVEPTELTLVSVLGACAEIGELELGKGVHGYIGSKGVVA- 321
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
D +V N L+D YAKCG + A +LFE S+ +++ W +I GF++HG ++A+E F+
Sbjct: 322 DGYVGNALVDMYAKCGSLELARQLFE--SMSTRDITCWNAMIVGFSVHGYSRKALELFDA 379
Query: 231 MQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
M+ ++P+ +G +EG +F M E+ +++P +KHYGC++D+L R G
Sbjct: 380 MR---VEPDHVTFLGVLIACSHGGLVDEGRVYFRSMTEDYKIVPGVKHYGCMVDMLCRCG 436
Query: 280 RLEQAEEVASGIPSQITNVVVWR 302
++ +A ++ + +P + N V+W+
Sbjct: 437 KVAEAYQMINHMPVK-ANCVLWK 458
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 89/215 (41%), Gaps = 25/215 (11%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
T ++ C + LG +H G + YV AL DMY G L+ + +LF+
Sbjct: 289 LTLVSVLGACAEIGELELGKGVHGYIGSKGVVADGYVGNALVDMYAKCGSLELARQLFES 348
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ R++ WN +I G + GYSR +AL LF M EP +T L VL
Sbjct: 349 MSTRDITCWNAMIVGFS-----VHGYSR-----KALELFDAM----RVEPDHVTFLGVLI 394
Query: 145 AIWKNGEVRNCQ-----LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
A G V + + Y G + C++D +CG + A ++
Sbjct: 395 ACSHGGLVDEGRVYFRSMTEDYKIVPGVKHY-----GCMVDMLCRCGKVAEAYQMINHMP 449
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
V + N V W +++ +HG A + F + ++
Sbjct: 450 V-KANCVLWKMVLAACRVHGHIDLANKAFHELHQL 483
>gi|110741594|dbj|BAE98745.1| hypothetical protein [Arabidopsis thaliana]
Length = 527
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/295 (31%), Positives = 157/295 (53%), Gaps = 31/295 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FTY L++ C L G Q+H K+G ++ V+V +L +MY G ++ SS +F
Sbjct: 131 DNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVF 190
Query: 83 DELPERNLVTWNVIIT---GLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
++L + +W+ +++ G+ W+ E L LFR M + + E +
Sbjct: 191 EKLESKTAASWSSMVSARAGMGMWS-------------ECLLLFRGMCSETNLKAEESGM 237
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
++ L A G + IHG+ R + +I V L+D Y KCGC+ A +F+
Sbjct: 238 VSALLACANTGALNLGMSIHGF-LLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQ--K 294
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
++++N ++++ +ISG A+HG G+ A+ F +M K GL+P+ + +EG
Sbjct: 295 MEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEG 354
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ F +M++E +V P +HYGCL+D+L RAG LE+A E IP + N V+WRT
Sbjct: 355 RRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIE-KNDVIWRT 408
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Query: 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
+I GY + EAL + M EP T +L A + +R + IHG K
Sbjct: 103 MIRGYVNVMSFEEALCFYNEMMQ-RGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKL 161
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225
G A D+ V N LI+ Y +CG + +S +FE ++ K SW++++S A GM E +
Sbjct: 162 GLEA-DVFVQNSLINMYGRCGEMELSSAVFE--KLESKTAASWSSMVSARAGMGMWSECL 218
Query: 226 ENFERM-QKVGLKPNRS 241
F M + LK S
Sbjct: 219 LLFRGMCSETNLKAEES 235
>gi|357487543|ref|XP_003614059.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
gi|355515394|gb|AES97017.1| hypothetical protein MTR_5g044260 [Medicago truncatula]
Length = 565
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 158/296 (53%), Gaps = 30/296 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D TY F+++ C L G Q+HA K+GF+ Y+ +L Y S G+L+ + K+F
Sbjct: 84 DKHTYPFVLKACAYLFSLFEGKQVHAHVLKLGFELDTYICNSLIHFYASCGYLETARKVF 143
Query: 83 DELPE-RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
D + E RN+V+WNV+I D Y+++ + L +F M + EP T+ +
Sbjct: 144 DRMCEWRNVVSWNVMI----------DSYAKVGDYDIVLIMFCEMM--KVYEPDCYTMQS 191
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFN--AFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
V+ A G + +H + K+ D+ V+ CL+D Y KCG + A ++FE S
Sbjct: 192 VIRACGGLGSLSLGMWVHAFVLKKCDKNVVCDVLVNTCLVDMYCKCGSLEIAKQVFEGMS 251
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNRSWRIG-----------EE 247
+++ SW +II GFA+HG K A++ F RM KV + PN +G +E
Sbjct: 252 Y--RDVSSWNSIILGFAVHGKAKAALDYFVRMVKVEKIVPNSITFVGVLSACNHSGMVDE 309
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
GL +F+ M +E V P + HYGCL+D+ RAG +++A V S +P + + V+WR+
Sbjct: 310 GLMYFEMMTKEYNVEPSLVHYGCLVDLYARAGHIQEALNVVSEMPIK-PDAVIWRS 364
>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
Length = 635
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 100/328 (30%), Positives = 157/328 (47%), Gaps = 54/328 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +TY FL + LG +LH K G S+V+ + AL +MY G + + +F
Sbjct: 113 DCYTYPFLFKGFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIF 172
Query: 83 DELPERNLVTWNVIITGL--------------------------------------VKWT 104
D + ++VTWN +I+G V WT
Sbjct: 173 DMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWT 232
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
+IDGY R+N EAL LFR M + +P E T+++VL A + G + + I Y +K
Sbjct: 233 AMIDGYLRLNCYKEALMLFREMQTSK-IKPDEFTMVSVLTACAQLGALELGEWIRTYIDK 291
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
D V N LID Y KCG + A +F ++ +++ +WT ++ G A++G G+EA
Sbjct: 292 NKVKN-DTFVGNALIDMYFKCGNVEMALSIF--NTLPQRDKFTWTAMVVGLAINGCGEEA 348
Query: 225 VENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLID 273
+ F +M K + P+ +G +EG KFF M + P+I HYGC++D
Sbjct: 349 LNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVD 408
Query: 274 ILERAGRLEQAEEVASGIPSQITNVVVW 301
+L +AG L++A E+ +P + N +VW
Sbjct: 409 LLGKAGHLKEAHEIIKNMPMK-PNSIVW 435
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 130/312 (41%), Gaps = 49/312 (15%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS--LGFLKDSSKLFDELPE 87
L TC ++ + Q+H+ K G + + + S G + + +LFD +PE
Sbjct: 20 LFETCKSMYHLK---QIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPE 76
Query: 88 RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIW 147
++ +WN++ GYSR+ ++L+ M +P T +
Sbjct: 77 PSVFSWNIMFK----------GYSRIACPKLGVSLYLEMLE-RNVKPDCYTYPFLFKGFT 125
Query: 148 KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD------ 201
++ ++ + +H + K G ++ ++ N LI+ Y+ CG I A +F+ +
Sbjct: 126 RSVALQLGRELHCHVVKYGLDS-NVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWN 184
Query: 202 ---------RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW--------RI 244
+K+++SWT I++GF G A + F +M + + + SW R+
Sbjct: 185 AMISGYNRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPE---RDHVSWTAMIDGYLRL 241
Query: 245 G--EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
+E L F +M + ++ PD ++ + G LE E + + I N V
Sbjct: 242 NCYKEALMLFREM-QTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDK---NKVKND 297
Query: 303 TGFLRLLINSYF 314
T LI+ YF
Sbjct: 298 TFVGNALIDMYF 309
>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
lyrata]
Length = 657
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 158/288 (54%), Gaps = 29/288 (10%)
Query: 23 DSFTYSFLIRTCV----TLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
D FTY+++++ CV T + G ++HA ++ G+ SHVY+ T L DMY G + +
Sbjct: 177 DRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYA 236
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRR-MAACEYTEPSEI 137
S +F+ +P RN+V+W+ +I Y++ ++ EAL FR M + + P+ +
Sbjct: 237 SYVFNGMPVRNVVSWSAMIA----------CYAKNGKAFEALRTFREMMTETKDSSPNSV 286
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
T+++VL A + +LIHGY +RG ++ + V + L+ Y +CG + ++F D
Sbjct: 287 TMVSVLQACASLAALEQGRLIHGYILRRGLDSI-LPVISALVTMYGRCGKLDVGQRVF-D 344
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------E 246
DR ++VSW ++IS + +HG G++A++ FE M G P + E
Sbjct: 345 RMHDR-DVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVE 403
Query: 247 EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
EG + F+ M + + P ++HY C++D+L RA RL++A ++ + ++
Sbjct: 404 EGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTE 451
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 96/210 (45%), Gaps = 18/210 (8%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
TY LI C S + G ++H G ++ T L MY LG + + K+FD+
Sbjct: 79 TYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKT 138
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
+R + WN + L + G+ E L L+ +M E T VL A
Sbjct: 139 RKRTIYVWNALFRALT-----LAGH-----GEEVLGLYWKMNRIG-VESDRFTYTYVLKA 187
Query: 146 IWKN----GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+ + + IH + +RG+N+ +++ L+D YA+ GC+ AS +F V
Sbjct: 188 CVASECTADHLTKGKEIHAHLTRRGYNSH-VYIMTTLVDMYARFGCVDYASYVFNGMPV- 245
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERM 231
+N+VSW+ +I+ +A +G EA+ F M
Sbjct: 246 -RNVVSWSAMIACYAKNGKAFEALRTFREM 274
>gi|242085550|ref|XP_002443200.1| hypothetical protein SORBIDRAFT_08g015300 [Sorghum bicolor]
gi|241943893|gb|EES17038.1| hypothetical protein SORBIDRAFT_08g015300 [Sorghum bicolor]
Length = 502
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/284 (33%), Positives = 146/284 (51%), Gaps = 24/284 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D ++ ++R C L LG H + ++G ++V V+ AL DMY G L D++++F
Sbjct: 102 DRYSIPAVLRACAELRDMLLGAVFHGLALRLGLLANVVVSGALLDMYAKTGMLADATRVF 161
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI-TILA 141
DE+PER+ V WN ++T GY+R RS E L LFR+ ++ +
Sbjct: 162 DEMPERDAVVWNCMVT----------GYARAGRSEETLELFRKAQIESVDMARDLRAVPN 211
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL G++ + IHG + DI V N L+D YAKCG + A +F V
Sbjct: 212 VLNVCANEGQLMKGREIHGRMVRCFAFDSDIAVGNALVDMYAKCGQVDGAQAVFASMKV- 270
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
+N++SW+T+IS + +HGMGKEA+ +E M G+KPN I +G +
Sbjct: 271 -RNVMSWSTLISCYGVHGMGKEALRIYEEMVSRGVKPNCITFISILSSCSHSGLVSDGRR 329
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
F+ M + V P HY C++D+L RAG +E+A + +P +
Sbjct: 330 IFESMSKVHAVEPTADHYACMVDLLGRAGAIEEAVGIIRKMPME 373
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 73/314 (23%), Positives = 135/314 (42%), Gaps = 42/314 (13%)
Query: 28 SFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE 87
S LIR C + G Q+HA G + ++T +Y G L + ++FD +
Sbjct: 10 SVLIRRCAASGALSPGAQVHAQGLVGGLLPNTTLDTDFVLLYSRCGALHRARQVFDGMSF 69
Query: 88 RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIW 147
++ +NV++ T A+ L R+ A P +I AVL A
Sbjct: 70 PSMHAYNVLLAASPPGT--------------AVELISRLLA-SGLRPDRYSIPAVLRAC- 113
Query: 148 KNGEVRNCQL--IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
E+R+ L + R ++ VS L+D YAK G + A+++F++ + ++
Sbjct: 114 --AELRDMLLGAVFHGLALRLGLLANVVVSGALLDMYAKTGMLADATRVFDE--MPERDA 169
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI-----------GE--EGLKFF 252
V W +++G+A G +E +E F + Q + R R G+ +G +
Sbjct: 170 VVWNCMVTGYARAGRSEETLELFRKAQIESVDMARDLRAVPNVLNVCANEGQLMKGREIH 229
Query: 253 DKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINS 312
+MV DI L+D+ + G+++ A+ V + + ++ NV+ W T LI+
Sbjct: 230 GRMVRCFAFDSDIAVGNALVDMYAKCGQVDGAQAVFASM--KVRNVMSWST-----LISC 282
Query: 313 YFFSPITLNSQRLF 326
Y + + R++
Sbjct: 283 YGVHGMGKEALRIY 296
>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
Length = 705
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 158/290 (54%), Gaps = 26/290 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T LI +C + LG +LHA + GF + + TAL DMY G ++ + +F
Sbjct: 231 NDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIF 290
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + ++++TW T +I Y++ N + A LF +M P+E+T++++
Sbjct: 291 DSMKNKDVMTW----------TAMISAYAQANCIDYAFQLFVQMRD-NGVRPNELTMVSL 339
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L NG + + H Y +K+G D+ + LID YAKCG I A +LF + ++DR
Sbjct: 340 LSLCAVNGALDMGKWFHAYIDKQGVEV-DVILKTALIDMYAKCGDISGAQRLFSE-AIDR 397
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGE-----------EGLKF 251
++ +W +++G+ MHG G++A++ F M+ +G+KPN IG EG
Sbjct: 398 -DICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGL 456
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F+KM+ + ++P ++HYGC++D+L RAG L++A ++ +P N+ +W
Sbjct: 457 FEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPV-TPNIAIW 505
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 142/289 (49%), Gaps = 26/289 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DSF +++ C +S +G ++H K G S V+V AL MY G L + LF
Sbjct: 108 DSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLF 167
Query: 83 DELPERNLVTWNVIITG------------LVKWTGIIDGYSRMNRSNEALALFRRMAACE 130
D++ ER++V+W+ +I +V WT +I GY R N E LF RM E
Sbjct: 168 DKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIE-E 226
Query: 131 YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190
P++IT+L+++ + G V+ + +H Y + GF + ++ L+D Y KCG I S
Sbjct: 227 NVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGF-GMSLALATALVDMYGKCGEIRS 285
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGL- 249
A +F+ S+ K++++WT +IS +A A + F +M+ G++PN + L
Sbjct: 286 ARAIFD--SMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLC 343
Query: 250 ---------KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
K+F +++ V D+ LID+ + G + A+ + S
Sbjct: 344 AVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFS 392
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 22/201 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T L+ C ++G HA K G + V + TAL DMY G + + +LF
Sbjct: 332 NELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLF 391
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E +R++ TWNV++ GY +AL LF M +P++IT +
Sbjct: 392 SEAIDRDICTWNVMMA----------GYGMHGYGEKALKLFTEMETLG-VKPNDITFIGA 440
Query: 143 LPAIWKNGEVRNC-----QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
L A G V ++IH +G + C++D + G + A K+ E
Sbjct: 441 LHACSHAGLVVEGKGLFEKMIHDFGLVPKVEHY-----GCMVDLLGRAGLLDEAYKMIES 495
Query: 198 TSVDRKNLVSWTTIISGFAMH 218
V N+ W +++ +H
Sbjct: 496 MPV-TPNIAIWGAMLAACKIH 515
>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
Length = 1012
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 151/294 (51%), Gaps = 26/294 (8%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L + ++ S +++ C + + G Q+H K+G +S ++V AL D Y + S K
Sbjct: 361 LPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLK 420
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F L + N V+WN I+ G+S+ EAL++F M A + +++T
Sbjct: 421 IFSSLRDANEVSWNTIVV----------GFSQSGLGEEALSVFCEMQAAQMP-CTQVTYS 469
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+VL A +R+ IH EK FN D + N LIDTYAKCG I A K+F+ +
Sbjct: 470 SVLRACASTASIRHAGQIHCSIEKSTFNN-DTVIGNSLIDTYAKCGYIRDALKVFQ--HL 526
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGL 249
++++SW IISG+A+HG +A+E F+RM K ++ N S + GL
Sbjct: 527 MERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGL 586
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
FD M + + P ++HY C++ +L RAGRL A + IPS + +VWR
Sbjct: 587 SLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSA-PSAMVWRA 639
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 26/230 (11%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF--QSHVYVNTALGDMYVSLGF 74
P P DSF + ++ C+ G +H + G + ++ L +MY LG
Sbjct: 52 PSVPGVDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGP 111
Query: 75 LKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM-----AAC 129
L + +LFD +PERN+V+ + ++ +++ A ALFRR+
Sbjct: 112 LASARRLFDRMPERNMVS----------FVTLVQAHAQRGDFEAAAALFRRLRWEGHEVN 161
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
++ + + + + A G V +C G+ NAF V + LID Y+ C +
Sbjct: 162 QFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDH----NAF---VGSGLIDAYSLCSLVS 214
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
A +F + RK+ V WT ++S ++ + + A F +M+ G KPN
Sbjct: 215 DAEHVF--NGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPN 262
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 86/194 (44%), Gaps = 14/194 (7%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
TYS ++R C + + Q+H K F + + +L D Y G+++D+ K+F L
Sbjct: 467 TYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHL 526
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
ER++++WN II+ GY+ ++ +AL LF RM E ++IT +A+L
Sbjct: 527 MERDIISWNAIIS----------GYALHGQAADALELFDRMNKSN-VESNDITFVALLSV 575
Query: 146 IWKNGEVRN-CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
G V + L G H + C++ + G + A + D
Sbjct: 576 CSSTGLVNHGLSLFDSMRIDHGIKPSMEHYT-CIVRLLGRAGRLNDALQFIGDIPSAPSA 634
Query: 205 LVSWTTIISGFAMH 218
+V W ++S +H
Sbjct: 635 MV-WRALLSSCIIH 647
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 18/219 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F + +++ + + L +H+ K+G + +V + L D Y + D+ +F
Sbjct: 161 NQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVF 220
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM--AACEYTEPSEITIL 140
+ + ++ V W T ++ YS + A +F +M + C +P+ +
Sbjct: 221 NGIVRKDAVVW----------TAMVSCYSENDCPENAFRVFSKMRVSGC---KPNPFALT 267
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+VL A V + IHG K N + HV L+D YAKCG I A FE
Sbjct: 268 SVLKAAVCLPSVVLGKGIHGCAIKT-LNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPY 326
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D L+S+ +IS +A ++A E F R+ + + PN
Sbjct: 327 DDVILLSF--MISRYAQSNQNEQAFELFLRLMRSSVLPN 363
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 19/130 (14%)
Query: 127 AACEYTEPSEITILAVLPAI---------------WKNGEVRNCQLIHGYGEKRG-FNAF 170
AA ++ E E+T LA+LP++ G+ R + +HG+ +RG
Sbjct: 36 AALQWLE-DELTSLAILPSVPGVDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRL 94
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
D+ +N L++ Y K G + SA +LF+ + +N+VS+ T++ A G + A F R
Sbjct: 95 DLFCANVLLNMYGKLGPLASARRLFD--RMPERNMVSFVTLVQAHAQRGDFEAAAALFRR 152
Query: 231 MQKVGLKPNR 240
++ G + N+
Sbjct: 153 LRWEGHEVNQ 162
>gi|15222513|ref|NP_174474.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169173|sp|Q9C6T2.1|PPR68_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g31920
gi|12321292|gb|AAG50713.1|AC079041_6 PPR-repeat protein, putative [Arabidopsis thaliana]
gi|332193295|gb|AEE31416.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 606
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/295 (31%), Positives = 157/295 (53%), Gaps = 31/295 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FTY L++ C L G Q+H K+G ++ V+V +L +MY G ++ SS +F
Sbjct: 131 DNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVF 190
Query: 83 DELPERNLVTWNVIIT---GLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
++L + +W+ +++ G+ W+ E L LFR M + + E +
Sbjct: 191 EKLESKTAASWSSMVSARAGMGMWS-------------ECLLLFRGMCSETNLKAEESGM 237
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
++ L A G + IHG+ R + +I V L+D Y KCGC+ A +F+
Sbjct: 238 VSALLACANTGALNLGMSIHGF-LLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQ--K 294
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
++++N ++++ +ISG A+HG G+ A+ F +M K GL+P+ + +EG
Sbjct: 295 MEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEG 354
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ F +M++E +V P +HYGCL+D+L RAG LE+A E IP + N V+WRT
Sbjct: 355 RRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIE-KNDVIWRT 408
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Query: 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
+I GY + EAL + M EP T +L A + +R + IHG K
Sbjct: 103 MIRGYVNVMSFEEALCFYNEMMQ-RGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKL 161
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225
G A D+ V N LI+ Y +CG + +S +FE ++ K SW++++S A GM E +
Sbjct: 162 GLEA-DVFVQNSLINMYGRCGEMELSSAVFE--KLESKTAASWSSMVSARAGMGMWSECL 218
Query: 226 ENFERM-QKVGLKPNRS 241
F M + LK S
Sbjct: 219 LLFRGMCSETNLKAEES 235
>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Brachypodium distachyon]
Length = 870
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 143/261 (54%), Gaps = 26/261 (9%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G +H + G + + V AL +MYV G ++++ +FD + +++++WN +I
Sbjct: 417 GKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLI----- 471
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
GYSR N +NEA +LF M P+ +T+ +LPA + + +H Y
Sbjct: 472 -----GGYSRNNLANEAFSLFTEMLL--QLRPNAVTMTCILPAAASLSSLERGREMHAYA 524
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
+RG+ D V+N LID Y KCG + A +LF+ S KNL+SWT +++G+ MHG G+
Sbjct: 525 LRRGYLEDDF-VANALIDMYVKCGALLLARRLFDRLS--NKNLISWTIMVAGYGMHGRGR 581
Query: 223 EAVENFERMQKVGLKPNRS-----------WRIGEEGLKFFDKMVEECEVLPDIKHYGCL 271
+A+ FE+M+ G+ P+ + + +EG +FFD M +E ++ P +KHY C+
Sbjct: 582 DAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCM 641
Query: 272 IDILERAGRLEQAEEVASGIP 292
+D+L G L++A E +P
Sbjct: 642 VDLLINTGNLKEAYEFIDSMP 662
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 111/217 (51%), Gaps = 14/217 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++T S +++ L G +H + K+GF S V AL Y KD+ +F
Sbjct: 195 DAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVF 254
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +P R++++WN +I+G G+ D +A+ LF RM E E T+L+V
Sbjct: 255 DGMPHRDVISWNSMISGCTS-NGLYD---------KAIELFVRM-WLEGEELDSATLLSV 303
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LPA + + +++HGY K GF + ++N L+D Y+ C S +K+F + + +
Sbjct: 304 LPACAELHLLFLGRVVHGYSVKTGFIS-QTSLANVLLDMYSNCSDWRSTNKIFRN--MVQ 360
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
KN+VSWT +I+ + G+ + F+ M G +P+
Sbjct: 361 KNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPD 397
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/218 (30%), Positives = 105/218 (48%), Gaps = 15/218 (6%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
DS T ++ C L LG +H K GF S + L DMY + + ++K+
Sbjct: 295 LDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKI 354
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F RN+V NV V WT +I Y+R ++ LF+ M E T P I +
Sbjct: 355 F-----RNMVQKNV-----VSWTAMITSYTRAGLYDKVAGLFQEMG-LEGTRPDIFAITS 403
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A N +++ + +HGY + G + V+N L++ Y KCG + A +F+ V
Sbjct: 404 ALHAFAGNELLKHGKSVHGYAIRNGMEKV-LAVTNALMEMYVKCGNMEEAKLIFD--GVV 460
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
K+++SW T+I G++ + + EA F M + L+PN
Sbjct: 461 SKDMISWNTLIGGYSRNNLANEAFSLFTEML-LQLRPN 497
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 110/231 (47%), Gaps = 32/231 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVF--SKVGFQSHVYVNTALGD----MYVSLGFLK 76
D +Y +++ C + G + H + S +G ++ LG MY+ G L+
Sbjct: 90 DDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDG---MDNVLGQKLVLMYLKCGDLE 146
Query: 77 DSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE 136
++ ++FDE+P+ ++ + WT ++ GY++ E + LFR+M C P
Sbjct: 147 NARRVFDEMPQ---------VSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCG-VRPDA 196
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
TI VL I G + + +++HG EK GF + V N L+ YAK A +F+
Sbjct: 197 YTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGS-QCAVGNALMAFYAKSNRTKDAILVFD 255
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEE 247
+ ++++SW ++ISG +G+ +A+E F RM W GEE
Sbjct: 256 --GMPHRDVISWNSMISGCTSNGLYDKAIELFVRM----------WLEGEE 294
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 95/220 (43%), Gaps = 34/220 (15%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++ T + ++ +LS G ++HA + G+ +V AL DMYV G L + +LF
Sbjct: 497 NAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLF 556
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D L +NL++W +++ GY R +A+ALF +M P + A+
Sbjct: 557 DRLSNKNLISWTIMVA----------GYGMHGRGRDAIALFEQMRVSGIA-PDAASFSAI 605
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFD-----------IHVSNCLIDTYAKCGCIFSA 191
L A +G +R+ G+ FD + C++D G + A
Sbjct: 606 LYACSHSG-LRD----------EGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEA 654
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
+ + ++ + + W +++ G +H K A E ER+
Sbjct: 655 YEFIDSMPIEPDSSI-WVSLLRGCRIHRNVKLAEEVAERV 693
>gi|222625199|gb|EEE59331.1| hypothetical protein OsJ_11408 [Oryza sativa Japonica Group]
Length = 691
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 151/294 (51%), Gaps = 26/294 (8%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L + ++ S +++ C + + G Q+H K+G +S ++V AL D Y + S K
Sbjct: 361 LPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLK 420
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F L + N V+WN I+ G+S+ EAL++F M A + +++T
Sbjct: 421 IFSSLRDANEVSWNTIVV----------GFSQSGLGEEALSVFCEMQAAQ-MPCTQVTYS 469
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+VL A +R+ IH EK FN D + N LIDTYAKCG I A K+F+ +
Sbjct: 470 SVLRACASTASIRHAGQIHCSIEKSTFNN-DTVIGNSLIDTYAKCGYIRDALKVFQ--HL 526
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGL 249
++++SW IISG+A+HG +A+E F+RM K ++ N S + GL
Sbjct: 527 MERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGL 586
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
FD M + + P ++HY C++ +L RAGRL A + IPS + +VWR
Sbjct: 587 SLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSA-PSAMVWRA 639
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 26/230 (11%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF--QSHVYVNTALGDMYVSLGF 74
P P DSF + ++ C+ G +H + G + ++ L +MY LG
Sbjct: 52 PSVPGVDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGP 111
Query: 75 LKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM-----AAC 129
L + +LFD +PERN+V+ + ++ +++ A ALFRR+
Sbjct: 112 LASARRLFDRMPERNMVS----------FVTLVQAHAQRGDFEAAAALFRRLRWEGHEVN 161
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
++ + + + + A G V +C G+ NAF V + LID Y+ C +
Sbjct: 162 QFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDH----NAF---VGSGLIDAYSLCSLVS 214
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
A +F + RK+ V WT ++S ++ + + A F +M+ G KPN
Sbjct: 215 DAEHVF--NGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPN 262
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 18/219 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F + +++ + + L +H+ K+G + +V + L D Y + D+ +F
Sbjct: 161 NQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVF 220
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM--AACEYTEPSEITIL 140
+ + ++ V W T ++ YS + A +F +M + C +P+ +
Sbjct: 221 NGIVRKDAVVW----------TAMVSCYSENDCPENAFRVFSKMRVSGC---KPNPFALT 267
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+VL A V + IHG K N + HV L+D YAKCG I A FE
Sbjct: 268 SVLKAAVCLPSVVLGKGIHGCAIKT-LNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPY 326
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D L+S+ +IS +A ++A E F R+ + + PN
Sbjct: 327 DDVILLSF--MISRYAQSNQNEQAFELFLRLMRSSVLPN 363
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 19/130 (14%)
Query: 127 AACEYTEPSEITILAVLPAI---------------WKNGEVRNCQLIHGYGEKRG-FNAF 170
AA ++ E E+T LA+LP++ G+ R + +HG+ +RG
Sbjct: 36 AALQWLE-DELTSLAILPSVPGVDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRL 94
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
D+ +N L++ Y K G + SA +LF+ + +N+VS+ T++ A G + A F R
Sbjct: 95 DLFCANVLLNMYGKLGPLASARRLFD--RMPERNMVSFVTLVQAHAQRGDFEAAAALFRR 152
Query: 231 MQKVGLKPNR 240
++ G + N+
Sbjct: 153 LRWEGHEVNQ 162
>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
Length = 897
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/300 (30%), Positives = 152/300 (50%), Gaps = 28/300 (9%)
Query: 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF 74
HS + P D FTY +++ C N G ++H K G +V AL DMY G
Sbjct: 477 HSRMEP--DDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGM 534
Query: 75 LKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134
++ + K+ D ++ +V+WN II+ G+S + +S +A F RM P
Sbjct: 535 IEKADKIHDRTEQKTMVSWNAIIS----------GFSLLQQSEDAHKFFSRMLEMG-VNP 583
Query: 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
T AVL V + IH K+ + D+++ + L+D Y+KCG + + +
Sbjct: 584 DNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQS-DVYICSTLVDMYSKCGNMQDSQLM 642
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG--------- 245
FE ++ V+W ++ G+A HG+G+EA++ FE MQ V +KPN + +
Sbjct: 643 FEKAP--NRDFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHMG 700
Query: 246 --EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++GL +FD M+ E + P +HY C++DIL R+GR+++A + +P + + V+WR
Sbjct: 701 LVDKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFE-ADAVIWRN 759
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/292 (27%), Positives = 128/292 (43%), Gaps = 26/292 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD T S + C ++ G Q+H + K S++ V A+ DMY L ++S L
Sbjct: 381 FDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDL 440
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + R+ V+WN II + E LA F M EP + T +
Sbjct: 441 FDMMERRDAVSWNAIIAAC----------EQNGNEEETLAHFASMIH-SRMEPDDFTYGS 489
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL A + IH K G FD V L+D Y KCG I A K+ + T +
Sbjct: 490 VLKACAGRQALNTGMEIHTRIIKSGM-GFDSFVGAALVDMYCKCGMIEKADKIHDRT--E 546
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---------SWRIGEEGL-KF 251
+K +VSW IISGF++ ++A + F RM ++G+ P+ + GL K
Sbjct: 547 QKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQ 606
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ + E+ D+ L+D+ + G ++ ++ + P++ + V W
Sbjct: 607 IHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMFEKAPNR--DFVTWNA 656
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 107/215 (49%), Gaps = 14/215 (6%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD + + +++ C L ++G Q+H + K GF V +AL MY L DS +
Sbjct: 179 FDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSV 238
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F ELPE+N V+W+ +I G V+ +R+ E L LF+ M S+ +
Sbjct: 239 FSELPEKNWVSWSAMIAGCVQ----------NDRNVEGLELFKEMQGVG-VGVSQSIYAS 287
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+ + +R + +H + K F + DI V +D YAKCG + A K+ +S+
Sbjct: 288 LFRSCAALSALRLGKELHSHALKSAFGS-DIIVGTATLDMYAKCGRMADAQKVL--SSMP 344
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
+ +L S+ II G+A G +A+++F+ + K GL
Sbjct: 345 KCSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGL 379
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/208 (29%), Positives = 96/208 (46%), Gaps = 34/208 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FTY+ ++ TC L+ LG Q+HA K QS VY+ + L DMY G ++DS +F
Sbjct: 584 DNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDSQLMF 643
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++ P R+ VTWN ++ GY+ EAL LF M +P+ T ++V
Sbjct: 644 EKAPNRDFVTWNAMLC----------GYAHHGLGEEALKLFESMQLVN-VKPNHATFVSV 692
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS-----------NCLIDTYAKCGCIFSA 191
L A G V +G + FD+ +S +C++D + G I A
Sbjct: 693 LRACAHMGLV-----------DKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRIDEA 741
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHG 219
L + + + V W ++S +HG
Sbjct: 742 LNLVQKMPFE-ADAVIWRNLLSVCKIHG 768
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 134/305 (43%), Gaps = 49/305 (16%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T+S + + C + N G Q HA GF+ +V+ L MY+ +L + K+FD++
Sbjct: 51 TFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKM 110
Query: 86 PERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALALFR 124
R++V++N II+G +V W +I G+ + +++ +F
Sbjct: 111 YLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFL 170
Query: 125 RMAACEYTEPSEITILAVLPAIWKNGEVRNCQL---IHGYGEKRGFNAFDIHVSNCLIDT 181
M C ++ VL A G + C + +HG K GF+ D+ + L+
Sbjct: 171 EMGRCG-VGFDRASLAVVLKAC---GALEECDMGVQVHGLVVKFGFDC-DVVTGSALLGM 225
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKC + + +F + + KN VSW+ +I+G + E +E F+ MQ VG+ ++S
Sbjct: 226 YAKCKRLDDSLSVF--SELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQS 283
Query: 242 --------------WRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
R+G+E + DI +D+ + GR+ A++V
Sbjct: 284 IYASLFRSCAALSALRLGKE----LHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKV 339
Query: 288 ASGIP 292
S +P
Sbjct: 340 LSSMP 344
>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 953
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/331 (27%), Positives = 172/331 (51%), Gaps = 38/331 (11%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
+Y++ + ++ H + + D + C L N+G +H++ K+G +S++ +
Sbjct: 356 MYEEAIRTFVGMHK-IGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQ 414
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG---------------------LV 101
AL MY G + + KLFDE +L++WN +I+G +V
Sbjct: 415 NALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVV 474
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
W+ +I GY++ + +E LALF+ M + +P E T+++V+ A + + + +H Y
Sbjct: 475 SWSSMISGYAQNDLFDETLALFQEMQMSGF-KPDETTLVSVISACARLAALEQGKWVHAY 533
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
++ G ++ + LID Y KCGC+ +A ++F + K + +W +I G AM+G+
Sbjct: 534 IKRNGLT-INVILGTTLIDMYMKCGCVETALEVF--YGMIEKGISTWNALILGLAMNGLV 590
Query: 222 KEAVENFERMQKVGLKPN-----------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGC 270
+ +++ F M+K + PN R + +EG F M+ + ++ P++KHYGC
Sbjct: 591 ESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGC 650
Query: 271 LIDILERAGRLEQAEEVASGIPSQITNVVVW 301
++D+L RAG+L++AEE+ + +P +V W
Sbjct: 651 MVDLLGRAGKLQEAEELLNRMP-MTPDVATW 680
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 90/415 (21%), Positives = 161/415 (38%), Gaps = 105/415 (25%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
F +YK + Y+ + D++TY LI+ C Q+H K+GF S VY
Sbjct: 198 FTLYKSMLSNYLGA--------DNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVY 249
Query: 61 VNTALGDM-------------------------------YVSLGFLKDSSKLFDELPERN 89
V L + Y+ +G ++++ ++ ++PER+
Sbjct: 250 VRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERS 309
Query: 90 LVTWNVIIT---------------------GLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
++ N +I +V W+ +I + + EA+ F M
Sbjct: 310 IIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHK 369
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
E+ ++ L A V +LIH K G ++ I++ N LI Y+KCG I
Sbjct: 370 IGVM-VDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESY-INLQNALIYMYSKCGDI 427
Query: 189 FSASKLFEDT-----------------------------SVDRKNLVSWTTIISGFAMHG 219
A KLF++ S+ K++VSW+++ISG+A +
Sbjct: 428 MVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQND 487
Query: 220 MGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHY 268
+ E + F+ MQ G KP+ + + E+G K+ ++ + ++
Sbjct: 488 LFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQG-KWVHAYIKRNGLTINVILG 546
Query: 269 GCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQ 323
LID+ + G +E A EV G+ + + W L L +N S + + S
Sbjct: 547 TTLIDMYMKCGCVETALEVFYGMIEK--GISTWNALILGLAMNGLVESSLDMFSN 599
>gi|225446849|ref|XP_002279693.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic [Vitis vinifera]
gi|302143555|emb|CBI22116.3| unnamed protein product [Vitis vinifera]
Length = 533
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/311 (31%), Positives = 154/311 (49%), Gaps = 37/311 (11%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
TY + + L + G QLH K+G Q ++ + MY + GFL + K F E
Sbjct: 126 LTYPSVFKAYAQLGLAHYGAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYE 185
Query: 85 LPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALALF 123
+ ++V WN +I GL K W +I GY R R EAL LF
Sbjct: 186 RMDFDIVAWNSMIMGLAKCGEVDESRKLFDEMPLRNTVSWNSMISGYVRNGRLREALDLF 245
Query: 124 RRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183
+M E +PSE T++++L A + G ++ + IH Y K F ++ V+ +ID Y
Sbjct: 246 GQMQE-ERIKPSEFTMVSLLNASARLGALKQGEWIHDYIRKNNFE-LNVIVTASIIDMYC 303
Query: 184 KCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWR 243
KCG I A ++FE + K L SW T+I G AM+G EA++ F R++ L+P+
Sbjct: 304 KCGSIGEAFQVFEMAPL--KGLSSWNTMILGLAMNGCENEAIQLFSRLECSNLRPDDVTF 361
Query: 244 IG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+G ++ ++F M + ++ P IKHY C++D L RAG LE+AEE+ +P
Sbjct: 362 VGVLTACNYSGLVDKAKEYFSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRNMP 421
Query: 293 SQITNVVVWRT 303
+ ++W +
Sbjct: 422 VN-PDAIIWSS 431
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 87/196 (44%), Gaps = 14/196 (7%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
FT L+ L G +H K F+ +V V ++ DMY G + ++ ++F+
Sbjct: 258 FTMVSLLNASARLGALKQGEWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEAFQVFEM 317
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNR-SNEALALFRRMAACEYTEPSEITILAVL 143
P + L +WN +I GL MN NEA+ LF R+ C P ++T + VL
Sbjct: 318 APLKGLSSWNTMILGLA-----------MNGCENEAIQLFSRL-ECSNLRPDDVTFVGVL 365
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
A +G V + K I +C++DT + G + A +L + V+
Sbjct: 366 TACNYSGLVDKAKEYFSLMSKTYKIEPSIKHYSCMVDTLGRAGLLEEAEELIRNMPVNPD 425
Query: 204 NLVSWTTIISGFAMHG 219
++ W++++S HG
Sbjct: 426 AII-WSSLLSACRKHG 440
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 136/327 (41%), Gaps = 61/327 (18%)
Query: 28 SFLIRTCVTLSYPNLGTQLHAVFSKVGFQSH-VYVNTALGDMYVSLGFLKDSSKL-FDEL 85
S L + C T+ ++HA K G H + V+ L S G + + L F ++
Sbjct: 28 SILEKHCTTMKDLQ---KIHAHLLKTGLAKHPLAVSPVLAFCATSPGGDINYAYLVFTQI 84
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
NL +WN II G+S+ + + A++LF M +P +T +V A
Sbjct: 85 HSPNLFSWNTII----------RGFSQSSTPHHAISLFIDMLIVSSVQPHRLTYPSVFKA 134
Query: 146 IWKNGEVRNCQLIHGYGEKRGFN------------------------------AFDIHVS 175
+ G +HG K G FDI
Sbjct: 135 YAQLGLAHYGAQLHGRVIKLGLQFDPFIRNTIIYMYANCGFLSEMWKAFYERMDFDIVAW 194
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
N +I AKCG + + KLF++ + +N VSW ++ISG+ +G +EA++ F +MQ+
Sbjct: 195 NSMIMGLAKCGEVDESRKLFDEMPL--RNTVSWNSMISGYVRNGRLREALDLFGQMQEER 252
Query: 236 LKP---------NRSWRIG--EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
+KP N S R+G ++G ++ + + ++ +ID+ + G + +A
Sbjct: 253 IKPSEFTMVSLLNASARLGALKQG-EWIHDYIRKNNFELNVIVTASIIDMYCKCGSIGEA 311
Query: 285 EEVASGIPSQITNVVVWRTGFLRLLIN 311
+V P + + W T L L +N
Sbjct: 312 FQVFEMAP--LKGLSSWNTMILGLAMN 336
>gi|224119882|ref|XP_002318186.1| predicted protein [Populus trichocarpa]
gi|222858859|gb|EEE96406.1| predicted protein [Populus trichocarpa]
Length = 537
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 102/317 (32%), Positives = 158/317 (49%), Gaps = 38/317 (11%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
DS ++ F ++ C L LH K GF S +YV +L Y+ D+ K+
Sbjct: 122 LDSHSFPFTLKACAQLGGVFSARCLHCQVLKFGFLSDLYVMNSLIHGYMVSDMSNDAYKV 181
Query: 82 FDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEAL 120
FDE P+R++V++NV+I G VK W II G ++ + EA+
Sbjct: 182 FDESPQRDVVSYNVLIDGFVKAGDVVKARELFDLMPVRDSVSWNTIIAGCAKGDYCEEAI 241
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LF M E P + +++ L A + GE+ + IH Y E+ D +S L+D
Sbjct: 242 ELFDFMMDLE-IRPDNVALVSTLSACAQLGELEKGKKIHDYIERNAMKV-DTFLSTGLVD 299
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
YAKCGC+ A K+F+ +S KNL +W ++ G AMHG G+ +E F RM + G+KP+
Sbjct: 300 FYAKCGCVDIALKIFDSSS--DKNLFTWNAMLVGLAMHGYGELLLEYFSRMIEAGVKPDG 357
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
+G +E K FD+M V + KHYGC+ D+L RAG +++ E+
Sbjct: 358 ISILGVLVGCSHSGLVDEARKLFDEMESVYGVPREPKHYGCMADLLGRAGLIKKVMEMIK 417
Query: 290 GIPSQITNVVVWRTGFL 306
+P + ++ VW +G L
Sbjct: 418 DMP-RGGDMSVW-SGLL 432
>gi|224115126|ref|XP_002332220.1| predicted protein [Populus trichocarpa]
gi|222831877|gb|EEE70354.1| predicted protein [Populus trichocarpa]
Length = 673
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/277 (30%), Positives = 153/277 (55%), Gaps = 16/277 (5%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT + ++ C T+ +LG Q+H++ +K+G +S++ + +L +Y+ G + ++ LF
Sbjct: 181 NDFTLTSVLSLCSTIQSSDLGMQVHSLSTKLGHESNLRITNSLVYLYLKCGCIDEAKNLF 240
Query: 83 DELPERNLVTWNVIITGLVKWTGII-DGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
+ + +NL+TWN +I G + + D +S EAL ++ ++ +P T+ +
Sbjct: 241 NRMEYKNLITWNAMIAGHAQAMDLAKDNFSAQQTGTEALGMYLKLNR-SGRKPDLFTLSS 299
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+L + + + IH K GF + D+ V L+D Y KCG I A K F D S
Sbjct: 300 ILTVCSRLAALEQGEQIHAQTIKSGFLS-DVVVGTALVDMYDKCGSIERARKAFLDMST- 357
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
+ L+SWT++I+ FA HG + A++ FE M+ G +PN+ +G +E L+
Sbjct: 358 -RTLISWTSMITSFARHGQSQHALQLFEDMRLAGFRPNQITFVGVLAACSHAGMVDEALE 416
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+F+ M +E ++ P + HYGCL+D+ R GRL++A +V
Sbjct: 417 YFEIMQKEYKIKPVMDHYGCLVDMFVRLGRLDEAFDV 453
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 119/287 (41%), Gaps = 31/287 (10%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
+FT S + C +L LG Q HA K + AL +Y G L S K F
Sbjct: 81 NFTLSIALNACSSLESITLGKQFHAFIIKYRISHDSSIGNALCSLYSKFGSLDSSVKAFR 140
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
E E+++++ WT II R+ L LF M E EP++ T+ +VL
Sbjct: 141 ETGEKDVIS----------WTTIISACGDNGRAGMGLRLFIEMLF-ENVEPNDFTLTSVL 189
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
+H K G + ++ ++N L+ Y KCGCI A LF ++ K
Sbjct: 190 SLCSTIQSSDLGMQVHSLSTKLGHES-NLRITNSLVYLYLKCGCIDEAKNLF--NRMEYK 246
Query: 204 NLVSWTTIISGFAMHGMGKE-AVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVL 262
NL++W +I+G H + A +NF Q G E L + K+
Sbjct: 247 NLITWNAMIAG---HAQAMDLAKDNFSAQQ-----------TGTEALGMYLKLNRSGRK- 291
Query: 263 PDIKHYGCLIDILERAGRLEQAEEV-ASGIPSQITNVVVWRTGFLRL 308
PD+ ++ + R LEQ E++ A I S + VV T + +
Sbjct: 292 PDLFTLSSILTVCSRLAALEQGEQIHAQTIKSGFLSDVVVGTALVDM 338
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 89/202 (44%), Gaps = 30/202 (14%)
Query: 46 LHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTG 105
+HA K G +V + L ++Y G + ++ K+FD LP RN+V W ++T
Sbjct: 2 VHAHVIKTGTHEEFFVMSFLVNVYAKCGVMVNARKVFDNLPRRNVVVWTTLMT------- 54
Query: 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
GY + ++ A+ +F M + PS T+ L A C + +
Sbjct: 55 ---GYVQNSQPEVAVEVFGDMLE-SGSFPSNFTLSIALNA---------CSSLESITLGK 101
Query: 166 GFNAF--------DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAM 217
F+AF D + N L Y+K G + S+ K F +T K+++SWTTIIS
Sbjct: 102 QFHAFIIKYRISHDSSIGNALCSLYSKFGSLDSSVKAFRETG--EKDVISWTTIISACGD 159
Query: 218 HGMGKEAVENFERMQKVGLKPN 239
+G + F M ++PN
Sbjct: 160 NGRAGMGLRLFIEMLFENVEPN 181
>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
Length = 2598
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 153/294 (52%), Gaps = 36/294 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ F+I+ C +LG +H K GF V+V L D Y G + + K+F
Sbjct: 124 DKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVF 183
Query: 83 DELPERNLVTWNVIITGL---------------------VKWTGIIDGYSRMNRSNEALA 121
+++ RN+V+W +I+GL V WT +I+GY R + EAL
Sbjct: 184 EKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALE 243
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF+RM A E P+E T+++++ A + G + + IH Y K +++ LID
Sbjct: 244 LFKRMQA-ENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIE-IGVYLGTALIDM 301
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
Y+KCG I A ++FE ++ RK+L +W ++I+ +HG+G+EA+ F M++V +KP+
Sbjct: 302 YSKCGSIKDAIEVFE--TMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAI 359
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
IG +EG +F +M + + P +HY C+ ++ R+ L++A
Sbjct: 360 TFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 86/291 (29%), Positives = 139/291 (47%), Gaps = 25/291 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
DS ++ C +S + +H K GF + V L D Y G S K+
Sbjct: 2122 LDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKV 2181
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + E++ ++WN +I Y++ S EAL +F M + +T+ A
Sbjct: 2182 FDWMEEKDDISWNSMIAV----------YAQSGLSGEALEVFHGMVRHVGVRYNAVTLSA 2231
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL A G +R + IH K +++ V +ID Y KCG + A K F+ +
Sbjct: 2232 VLLACAHAGALRAGKCIHDQVIKMDLE-YNVCVGTSIIDMYCKCGRVEMAKKTFD--RMK 2288
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLK 250
KN+ SWT +++G+ MHG KEA++ F +M + G+KPN + EEG
Sbjct: 2289 EKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWH 2348
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+F+ M + ++ P I+HYGC++D+ RAG L +A + + + + VVW
Sbjct: 2349 WFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMK-PDFVVW 2398
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 88/303 (29%), Positives = 149/303 (49%), Gaps = 37/303 (12%)
Query: 18 LPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD 77
L P SF + I++C L G H GF++ ++V++AL DMY G LKD
Sbjct: 2011 LIPTRSSFPCT--IKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKD 2068
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE- 136
+ LFDE+P RN+V+ WT +I GY + +++ AL LF+ E TE +
Sbjct: 2069 ARALFDEIPLRNVVS----------WTSMITGYVQNEQADNALLLFKDFLE-EETEVEDG 2117
Query: 137 -------ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
+ +++VL A + + +HG+ K+GF+ I V N L+D YAKCG
Sbjct: 2118 NNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDG-SIGVGNTLMDAYAKCGQPL 2176
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM-QKVGLKPNRS------W 242
+ K+F+ ++ K+ +SW ++I+ +A G+ EA+E F M + VG++ N
Sbjct: 2177 VSKKVFD--WMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLL 2234
Query: 243 RIGEEGLKFFDKMVEECEVLPDIKHYGC----LIDILERAGRLEQAEEVASGIPSQITNV 298
G K + + + D+++ C +ID+ + GR+E A++ + + NV
Sbjct: 2235 ACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEK--NV 2292
Query: 299 VVW 301
W
Sbjct: 2293 KSW 2295
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 108/240 (45%), Gaps = 30/240 (12%)
Query: 29 FLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPER 88
FL++ C + Q+HA + G + + L +Y + G + + LF ++
Sbjct: 32 FLLQNCKNFKHLR---QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNP 88
Query: 89 NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148
TWN+II I+G S +AL L++ M C+ + T V+ A
Sbjct: 89 CTFTWNLIIRA-----NTINGLSE-----QALMLYKNM-VCQGIAADKFTFPFVIKACTN 137
Query: 149 NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSW 208
+ +++HG K GF+ D+ V N LID Y KCG A K+FE V +N+VSW
Sbjct: 138 FLSIDLGKVVHGSLIKYGFSG-DVFVQNNLIDFYFKCGHTRFALKVFEKMRV--RNVVSW 194
Query: 209 TTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW----------RIGEEGLKFFDKMVEE 258
TT+ISG G +EA F+ ++ K SW + EE L+ F +M E
Sbjct: 195 TTVISGLISCGDLQEARRIFD---EIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAE 251
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 91/202 (45%), Gaps = 22/202 (10%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
+++ T S ++ C G +H K+ + +V V T++ DMY G ++ + K
Sbjct: 2224 YNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKT 2283
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + E+N+ + WT ++ GY R+ EAL +F +M +P+ IT ++
Sbjct: 2284 FDRMKEKNVKS----------WTAMVAGYGMHGRAKEALDIFYKMVRAG-VKPNYITFVS 2332
Query: 142 VLPAIWKNGEVRNC-----QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
VL A G V + H Y + G + C++D + + GC+ A L +
Sbjct: 2333 VLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHY-----GCMVDLFGRAGCLNEAYNLIK 2387
Query: 197 DTSVDRKNLVSWTTIISGFAMH 218
+ + + V W +++ +H
Sbjct: 2388 RMKM-KPDFVVWGSLLGACRIH 2408
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 33/130 (25%)
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEEC 259
VD+ N+ SW ++I+ A G EA+ F ++K+GL P RS F ++ C
Sbjct: 1975 VDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRS---------SFPCTIKSC 2025
Query: 260 EVLPDI-----KHY--------------GCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
L D+ H LID+ + G+L+ A + IP + NVV
Sbjct: 2026 SALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIP--LRNVVS 2083
Query: 301 WR---TGFLR 307
W TG+++
Sbjct: 2084 WTSMITGYVQ 2093
>gi|359497788|ref|XP_002273247.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 580
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 99/315 (31%), Positives = 154/315 (48%), Gaps = 37/315 (11%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
LFD FT L+ +C +L P L Q+H +G S++ + AL D Y G S
Sbjct: 145 LFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNSNIIIGNALIDAYGKCGEPDISFS 204
Query: 81 LFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEA 119
+F +PER++V+W ++ V WT +I G+++ R +EA
Sbjct: 205 IFSRMPERDVVSWTSMVAAYAQASRLEDAHWLFSQMQEKNTVSWTALIAGFAQNGRGDEA 264
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF--DIHVSNC 177
L LF +M E PS T +VL A + + IHG+ + + +I + N
Sbjct: 265 LHLFEQMRE-EGIPPSAFTFASVLSACADLALIARGKEIHGHIIRSTCIDYFCNIFILNA 323
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
LID Y KCG + SA+ LF+ + K++VSW ++I+GFA +G G+E++ FERM + ++
Sbjct: 324 LIDMYCKCGQMRSATTLFK--GMHEKDIVSWNSLITGFAQNGHGEESLAVFERMIEADIR 381
Query: 238 PNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
PN +G EGL+ D M ++ V P HY +ID+L R RLE+A
Sbjct: 382 PNHVTFLGLLSACCHTGLVSEGLRILDSMEKDYGVCPRSDHYAIMIDLLGRNNRLEEAMG 441
Query: 287 VASGIPSQITNVVVW 301
+ P +V +W
Sbjct: 442 LIKRAPKGSDHVGMW 456
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 76/265 (28%), Positives = 117/265 (44%), Gaps = 54/265 (20%)
Query: 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP 86
YS LI C+T + LG LH+ F K ++ L D Y ++ + K+F LP
Sbjct: 17 YSSLISKCITTRHLKLGKLLHSHFIKTALIFTTFLANRLIDFYSKCDSIQSAHKVFHVLP 76
Query: 87 ERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALALFRR 125
+N +WN+II+ LV + +I G E+L +F+
Sbjct: 77 VKNTHSWNIIISAYSRSGLFNEAHNLLDQMPKPNLVSYNSLISGLGHHGFRKESLNVFKT 136
Query: 126 M-AACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK 184
M C E T+++++ + G + +HG G N+ +I + N LID Y K
Sbjct: 137 MLKQCSNVLFDEFTLVSLVGSCASLGAPELLRQVHGAAIIIGLNS-NIIIGNALIDAYGK 195
Query: 185 CG------CIFS-------------------ASKLFED-----TSVDRKNLVSWTTIISG 214
CG IFS AS+L ED + + KN VSWT +I+G
Sbjct: 196 CGEPDISFSIFSRMPERDVVSWTSMVAAYAQASRL-EDAHWLFSQMQEKNTVSWTALIAG 254
Query: 215 FAMHGMGKEAVENFERMQKVGLKPN 239
FA +G G EA+ FE+M++ G+ P+
Sbjct: 255 FAQNGRGDEALHLFEQMREEGIPPS 279
>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Vitis vinifera]
Length = 650
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/312 (29%), Positives = 160/312 (51%), Gaps = 37/312 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ T +I C L + + + VY+ L DMY + + +F
Sbjct: 216 DAVTMVKIILACSHLGDWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRRSLAELAQGVF 275
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
D + ERN+V+WN ++ G ++ WT +I GYS+ ++ ++A+
Sbjct: 276 DRMRERNIVSWNALVMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVK 335
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF+ M A + +P ++T+ +VL A G++ +H Y + G A DI+V N LID
Sbjct: 336 LFQEMMAAK-VKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQA-DIYVGNSLIDM 393
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
Y KCG + A ++F + K+ VSWT++ISG A++G A++ F +M + G++P
Sbjct: 394 YCKCGMVEKALEVFH--RMKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHG 451
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+G +GL++F+ M ++P +KHYGC++D+L R+G +++A E
Sbjct: 452 TFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKK 511
Query: 291 IPSQITNVVVWR 302
+P + +VVVWR
Sbjct: 512 MPI-VPDVVVWR 522
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/344 (25%), Positives = 157/344 (45%), Gaps = 57/344 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++ T FL + C +S G ++H K+GF+S+++V+ AL MY G L + K+F
Sbjct: 115 NNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMF 174
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + +R+LV+WN +I GYS+ N+ E L LF M A + +T++ +
Sbjct: 175 DGMLDRDLVSWNTLIC----------GYSQYNKYKEVLRLFDAMTAAN-IKADAVTMVKI 223
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY-------------------- 182
+ A G+ + Y ++ D+++ N LID Y
Sbjct: 224 ILACSHLGDWEFADSMVKYIKENNLE-IDVYLGNTLIDMYGRRSLAELAQGVFDRMRERN 282
Query: 183 -----------AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
AK G + +A KLF++ + +++++SWT++I+G++ +AV+ F+ M
Sbjct: 283 IVSWNALVMGHAKVGNLTAARKLFDN--MPKRDVISWTSMITGYSQASQFSDAVKLFQEM 340
Query: 232 QKVGLKPNR---------SWRIGEEGLKF-FDKMVEECEVLPDIKHYGCLIDILERAGRL 281
+KP++ +G+ + + + V DI LID+ + G +
Sbjct: 341 MAAKVKPDKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMV 400
Query: 282 EQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRL 325
E+A EV + + + V W + L +N + S + L SQ L
Sbjct: 401 EKALEVFHRMKDK--DSVSWTSVISGLAVNGFANSALDLFSQML 442
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 103/216 (47%), Gaps = 24/216 (11%)
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
LV W +I G S+ + EA+ ++ RM T + +T++ + A + ++ + + IH
Sbjct: 81 LVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGIT-GNNLTLIFLFKACARVSDIVSGRKIH 139
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
+ K GF ++ + VSN LI YA CG + A K+F D +DR +LVSW T+I G++ +
Sbjct: 140 VHALKLGFESY-LFVSNALIHMYAMCGQLGFAQKMF-DGMLDR-DLVSWNTLICGYSQYN 196
Query: 220 MGKEAVENFERMQKVGLKPNR--------------SWRIGEEGLKFFDKMVEECEVLPDI 265
KE + F+ M +K + W + +K+ ++E + D+
Sbjct: 197 KYKEVLRLFDAMTAANIKADAVTMVKIILACSHLGDWEFADSMVKY----IKENNLEIDV 252
Query: 266 KHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
LID+ R E A+ V + + N+V W
Sbjct: 253 YLGNTLIDMYGRRSLAELAQGVFDRMRER--NIVSW 286
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 92/198 (46%), Gaps = 14/198 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + ++ C L ++G +H + G Q+ +YV +L DMY G ++ + ++F
Sbjct: 348 DKVTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVF 407
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ +++ V+W +I+GL ++G+ +N AL LF +M E +P+ T + +
Sbjct: 408 HRMKDKDSVSWTSVISGLA-----VNGF-----ANSALDLFSQMLR-EGVQPTHGTFVGI 456
Query: 143 LPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G V + + G H C++D ++ G I A + + +
Sbjct: 457 LLACAHAGLVNKGLEYFESMESVHGLVPAMKHY-GCVVDLLSRSGNIDKAYEFIKKMPI- 514
Query: 202 RKNLVSWTTIISGFAMHG 219
++V W ++S +HG
Sbjct: 515 VPDVVVWRILLSACKLHG 532
>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Brachypodium distachyon]
Length = 654
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 153/282 (54%), Gaps = 30/282 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGT-----QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD 77
DS++Y+ ++ C+ +S + ++HA + G+ H +V T L D Y LG ++
Sbjct: 173 DSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTLIDCYAKLGIVRY 232
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT-EPSE 136
+ +F +PERN+V+W + +I Y++ R +A+ LF+ M A + P+
Sbjct: 233 AESVFAAMPERNVVSW----------SAMIGCYAKNERPADAIELFKDMMASDADLVPNS 282
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
ITI++VL A + + +L+H Y +RGF++ + V N L+ Y +CGC+ +F+
Sbjct: 283 ITIVSVLNACAGVNALSHGKLLHAYILRRGFDSL-VSVLNALMAMYMRCGCLEVGRHIFK 341
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIG 245
R+++VSW ++ISG+ MHG G EAV+ FE M VG P+ +
Sbjct: 342 WIG-HRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSHAGLV 400
Query: 246 EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
EG F+ MVE V P +HY C++D+L RAG+L++A E+
Sbjct: 401 NEGKMLFESMVEY-GVTPRAEHYACMVDLLGRAGQLDEAMEL 441
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 90/194 (46%), Gaps = 25/194 (12%)
Query: 55 FQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMN 114
F+S +++T L + Y +LG L + ++FDE P +N+ WN ++ L +
Sbjct: 104 FRSDPFLSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALAL----------AD 153
Query: 115 RSNEALALFRRMA-------ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF 167
+EALA M + YT + I + VR +H + +RG+
Sbjct: 154 HGDEALARLADMGRLGVPVDSYSYTHGLKACIAVSASHAPASARVRE---VHAHAIRRGY 210
Query: 168 NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVEN 227
A HV+ LID YAK G + A +F ++ +N+VSW+ +I +A + +A+E
Sbjct: 211 -ALHTHVATTLIDCYAKLGIVRYAESVF--AAMPERNVVSWSAMIGCYAKNERPADAIEL 267
Query: 228 FERM--QKVGLKPN 239
F+ M L PN
Sbjct: 268 FKDMMASDADLVPN 281
>gi|297837569|ref|XP_002886666.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
gi|297332507|gb|EFH62925.1| hypothetical protein ARALYDRAFT_475343 [Arabidopsis lyrata subsp.
lyrata]
Length = 608
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 101/305 (33%), Positives = 154/305 (50%), Gaps = 48/305 (15%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ F+++ C + + G Q+H K GF VYVN L Y S G L + K+F
Sbjct: 131 DKHTFPFVLKACAYIFGLSEGKQVHCQIVKHGFSGDVYVNNGLIHFYGSCGCLDLARKVF 190
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+PER+LV+WN +I LV R+ + AL LFR M + EP T+ +V
Sbjct: 191 DEMPERSLVSWNSMIDALV----------RVGEYDSALQLFRDMQ--KSFEPDGYTMQSV 238
Query: 143 LPAIWKNGE-----------VRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191
L A G +RNC + A D+ + N LI+ Y KCG + A
Sbjct: 239 LSACAGLGSLSLGTWSHVFLLRNCDVD---------VAMDVLIKNSLIEMYCKCGSLRMA 289
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG--LKPNRSWRIG---- 245
++F+ + + +L SW +I GFA HG +EA+ F+ M K G +KPN +
Sbjct: 290 EQVFQ--GMRKHDLASWNAMILGFATHGKAEEAMNCFDCMVKEGKNVKPNSVTFVALLIA 347
Query: 246 -------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNV 298
+G ++FD MV E + P ++HYGC+ID+L RAG + +A ++ +P + +
Sbjct: 348 CNHRGMVNKGRQYFDMMVREYGIEPALEHYGCIIDLLARAGYITEAIDMVMSMPMK-PDA 406
Query: 299 VVWRT 303
V+WR+
Sbjct: 407 VIWRS 411
>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
mitochondrial [Vitis vinifera]
gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
Length = 688
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/286 (32%), Positives = 151/286 (52%), Gaps = 28/286 (9%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSK 80
D F LI+ C + G H + K F S+ ++ T+L DMY+ GFL + K
Sbjct: 212 LDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALK 271
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
LF+E+ R++V W+ II G ++R R+ E++++FR+M A T P+ +T
Sbjct: 272 LFEEISYRDVVVWSAIIAG----------FARNGRALESISMFRQMLADSVT-PNSVTFA 320
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+++ A G ++ + +HGY + G D+ ID YAKCGCI +A ++F +
Sbjct: 321 SIVLACSSLGSLKQGRSVHGYMIRNGVE-LDVKNYTSFIDMYAKCGCIVTAYRVF--CQI 377
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN------------RSWRIGEEG 248
KN+ SW+T+I+GF MHG+ EA+ F M+ V PN S RI EEG
Sbjct: 378 PEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRI-EEG 436
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
F M + + P +HY C++D+L RAG++++A + +P++
Sbjct: 437 WSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTE 482
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 153/346 (44%), Gaps = 38/346 (10%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L DSF F ++ C LS H++ K+ + YV AL ++Y LG L+++ K
Sbjct: 110 LVDSFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHK 169
Query: 81 LFDELPERNLVTWNVIITGLVKWT---GIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
+F+E+P +N V W V+I G + ++ G+ + +SRM RS L F
Sbjct: 170 VFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPF-------------- 215
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
+ ++ A + + HG K+ F + + L+D Y KCG + A KLFE+
Sbjct: 216 VVEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEE 275
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGE 246
S +++V W+ II+GFA +G E++ F +M + PN S +
Sbjct: 276 ISY--RDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIVLACSSLGSLK 333
Query: 247 EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFL 306
+G M+ V D+K+Y ID+ + G + A V IP + NV W T
Sbjct: 334 QGRSVHGYMIRN-GVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEK--NVFSWST--- 387
Query: 307 RLLINSYFFSPITLNSQRLFFFPAALYALTQILGFKPLFRKESSDG 352
+IN + + + LF+ ++ L + F + S G
Sbjct: 388 --MINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSG 431
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 105/253 (41%), Gaps = 30/253 (11%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y+ LG L +SK F+ + NL +WN I+ +S+ + L LF+RM
Sbjct: 57 YIQLGSLHVASKAFNHITFENLHSWNTILAS----------HSKNKCFYDVLQLFKRMLK 106
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
E ++ + A + + +L H K D +V+ L++ Y + G +
Sbjct: 107 -EGKLVDSFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEG-DPYVAPALMNVYTELGSL 164
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-----------LK 237
A K+FE+ V KN V W +I G E F RM++ G ++
Sbjct: 165 EEAHKVFEE--VPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQ 222
Query: 238 PNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITN 297
+ G+EG F +++ + + L+D+ + G L+ A ++ I + +
Sbjct: 223 ACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYR--D 280
Query: 298 VVVWR---TGFLR 307
VVVW GF R
Sbjct: 281 VVVWSAIIAGFAR 293
>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 809
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 90/331 (27%), Positives = 172/331 (51%), Gaps = 38/331 (11%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
+Y++ + ++ H + + D + C L N+G +H++ K+G +S++ +
Sbjct: 221 MYEEAIRTFVGMHK-IGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQ 279
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG---------------------LV 101
AL MY G + + KLFDE +L++WN +I+G +V
Sbjct: 280 NALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVV 339
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
W+ +I GY++ + +E LALF+ M + +P E T+++V+ A + + + +H Y
Sbjct: 340 SWSSMISGYAQNDLFDETLALFQEMQMSGF-KPDETTLVSVISACARLAALEQGKWVHAY 398
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
++ G ++ + LID Y KCGC+ +A ++F + K + +W +I G AM+G+
Sbjct: 399 IKRNGL-TINVILGTTLIDMYMKCGCVETALEVF--YGMIEKGISTWNALILGLAMNGLV 455
Query: 222 KEAVENFERMQKVGLKPN-----------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGC 270
+ +++ F M+K + PN R + +EG F M+ + ++ P++KHYGC
Sbjct: 456 ESSLDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGC 515
Query: 271 LIDILERAGRLEQAEEVASGIPSQITNVVVW 301
++D+L RAG+L++AEE+ + +P +V W
Sbjct: 516 MVDLLGRAGKLQEAEELLNRMP-MTPDVATW 545
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 90/415 (21%), Positives = 161/415 (38%), Gaps = 105/415 (25%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
F +YK + Y+ + D++TY LI+ C Q+H K+GF S VY
Sbjct: 63 FTLYKSMLSNYLGA--------DNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFDSDVY 114
Query: 61 VNTALGDM-------------------------------YVSLGFLKDSSKLFDELPERN 89
V L + Y+ +G ++++ ++ ++PER+
Sbjct: 115 VRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQMPERS 174
Query: 90 LVTWNVIIT---------------------GLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
++ N +I +V W+ +I + + EA+ F M
Sbjct: 175 IIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFVGMHK 234
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
E+ ++ L A V +LIH K G ++ I++ N LI Y+KCG I
Sbjct: 235 IGVM-VDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESY-INLQNALIYMYSKCGDI 292
Query: 189 FSASKLFEDT-----------------------------SVDRKNLVSWTTIISGFAMHG 219
A KLF++ S+ K++VSW+++ISG+A +
Sbjct: 293 MVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQND 352
Query: 220 MGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHY 268
+ E + F+ MQ G KP+ + + E+G K+ ++ + ++
Sbjct: 353 LFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQG-KWVHAYIKRNGLTINVILG 411
Query: 269 GCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQ 323
LID+ + G +E A EV G+ + + W L L +N S + + S
Sbjct: 412 TTLIDMYMKCGCVETALEVFYGMIEK--GISTWNALILGLAMNGLVESSLDMFSN 464
>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 87/286 (30%), Positives = 153/286 (53%), Gaps = 23/286 (8%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
++S ++R+C LG H K+GF+ + + T L D Y G+++++ LFD +
Sbjct: 32 SFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKHGYVEEARNLFDNM 91
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
ERN + V W +I Y + A+++F++M + E +P+E+T++++L A
Sbjct: 92 TERN--------SNSVTWNTMISAYVQCGEFGTAISMFQQMQS-ENVKPTEVTMVSLLSA 142
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
G + + IHGY + D+ + N LID Y KCG + +A +F S RKN+
Sbjct: 143 CAHLGALDMGEWIHGYIRTKRLK-IDVVLGNALIDMYCKCGALEAAIDVFHGLS--RKNI 199
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDK 254
W +II G M+G G+EA+ F M+K G+KP+ +G G ++F +
Sbjct: 200 FCWNSIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSE 259
Query: 255 MVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
M+ + P ++HYGC++D+L RAG L++A E+ +P + ++V+
Sbjct: 260 MLGVYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVL 305
>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g47840-like [Cucumis
sativus]
Length = 712
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 151/292 (51%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ +T+S +I C + G QLHA VGF + + V ++ +Y G L SK+F
Sbjct: 317 NEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVF 376
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ R+++TW+ II YS++ EA RM + E +P+E + +V
Sbjct: 377 CSMKFRDIITWSTIIAA----------YSQVGYGEEAFEYLSRMRS-EGPKPNEFALASV 425
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + + +H + G + V + LI YAKCG I ASK+F D+ D
Sbjct: 426 LSVCGSMAILEQGKQLHAHVLSVGLEQTSM-VCSALIIMYAKCGSIAEASKIFMDSWKD- 483
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+++SWT +ISG+A HG +EA+E FE +QKVGL+P+ IG + G +
Sbjct: 484 -DIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYY 542
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ M ++ + P +HYGC+ID+L RAGRL AE + +P Q + VVW T
Sbjct: 543 FNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDD-VVWST 593
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 109/222 (49%), Gaps = 20/222 (9%)
Query: 22 FDSFTYSFLIRTC-VTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
D F S ++TC + L+Y GT LH K G + V+V +AL DMY+ +G + S K
Sbjct: 114 IDPFLLSLGLKTCGLGLNYL-YGTNLHGFSVKXGLVNSVFVGSALLDMYMKIGEIGRSCK 172
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FDE+P RN VTW +ITGLV R S LA F M + S +
Sbjct: 173 VFDEMPTRNAVTWTAVITGLV----------RAGYSEAGLAYFSGMGRSKVEYDSYAYAI 222
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGF--NAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
A L A +G + + + IH K+GF N+F V+N L Y KCG + F
Sbjct: 223 A-LKASADSGALNHGRSIHTQTLKKGFDENSF---VANSLTTMYNKCGKLDYGLHTFR-- 276
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+ ++VSWTTI++ + G ++ F+RM+ + PN
Sbjct: 277 KMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNE 318
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 108/220 (49%), Gaps = 16/220 (7%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
+DS+ Y+ ++ N G +H K GF + +V +L MY G L
Sbjct: 215 YDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHT 274
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F ++ ++V+W I+T Y +M + + L F+RM A P+E T A
Sbjct: 275 FRKMRTLDVVSWTTIVT----------AYIQMGKEDCGLQAFKRMRASNVI-PNEYTFSA 323
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGF-NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
V+ ++ + +H + GF NA + V+N ++ Y+KCG + S SK+F S+
Sbjct: 324 VISCCANFARLKWGEQLHAHVLCVGFVNA--LSVANSIMTLYSKCGELASVSKVF--CSM 379
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+++++W+TII+ ++ G G+EA E RM+ G KPN
Sbjct: 380 KFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNE 419
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 31/173 (17%)
Query: 70 VSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC 129
V LKD+ LFD+LP+R+ V+ WT II GY + S+EAL LF +M
Sbjct: 60 VKTNHLKDARDLFDQLPQRDEVS----------WTNIISGYVNSSDSSEALRLFSKMRL- 108
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQL---------IHGYGEKRGFNAFDIHVSNCLID 180
SE+ I L ++ ++ C L +HG+ K G + V + L+D
Sbjct: 109 ----QSELRIDPFLLSL----GLKTCGLGLNYLYGTNLHGFSVKXGL-VNSVFVGSALLD 159
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
Y K G I + K+F++ + +N V+WT +I+G G + + F M +
Sbjct: 160 MYMKIGEIGRSCKVFDE--MPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGR 210
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 37/219 (16%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
+ S P P + F + ++ C +++ G QLHA VG + V +AL MY
Sbjct: 410 MRSEGPKP---NEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAK 466
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY 131
G + ++SK+F + + ++++W +I+ GY+ S EA+ LF +
Sbjct: 467 CGSIAEASKIFMDSWKDDIISWTAMIS----------GYAEHGHSQEAIELFENIQKVGL 516
Query: 132 TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF-----DIHVS------NCLID 180
P +T + VL A G V GF F D H++ C+ID
Sbjct: 517 -RPDSVTFIGVLTACSHAGMV-----------DLGFYYFNSMSKDYHITPSKEHYGCMID 564
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
+ G + A L + ++V W+T++ +HG
Sbjct: 565 LLCRAGRLHDAETLIRSMPIQWDDVV-WSTLLRACRIHG 602
>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840-like [Cucumis sativus]
Length = 712
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 151/292 (51%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ +T+S +I C + G QLHA VGF + + V ++ +Y G L SK+F
Sbjct: 317 NEYTFSAVISCCANFARLKWGEQLHAHVLCVGFVNALSVANSIMTLYSKCGELASVSKVF 376
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ R+++TW+ II YS++ EA RM + E +P+E + +V
Sbjct: 377 CSMKFRDIITWSTIIAA----------YSQVGYGEEAFEYLSRMRS-EGPKPNEFALASV 425
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + + +H + G + V + LI YAKCG I ASK+F D+ D
Sbjct: 426 LSVCGSMAILEQGKQLHAHVLSVGLEQTSM-VCSALIIMYAKCGSIAEASKIFMDSWKD- 483
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+++SWT +ISG+A HG +EA+E FE +QKVGL+P+ IG + G +
Sbjct: 484 -DIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDSVTFIGVLTACSHAGMVDLGFYY 542
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ M ++ + P +HYGC+ID+L RAGRL AE + +P Q + VVW T
Sbjct: 543 FNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIRSMPIQWDD-VVWST 593
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 109/222 (49%), Gaps = 20/222 (9%)
Query: 22 FDSFTYSFLIRTC-VTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
D F S ++TC + L+Y GT LH K G + V+V +AL DMY+ +G + S K
Sbjct: 114 IDPFLLSLGLKTCGLGLNYL-YGTNLHGFSVKTGLVNSVFVGSALLDMYMKIGEIGRSCK 172
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FDE+P RN VTW +ITGLV R S LA F M + S +
Sbjct: 173 VFDEMPTRNAVTWTAVITGLV----------RAGYSEAGLAYFSGMGRSKVEYDSYAYAI 222
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGF--NAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
A L A +G + + + IH K+GF N+F V+N L Y KCG + F
Sbjct: 223 A-LKASADSGALNHGRSIHTQTLKKGFDENSF---VANSLTTMYNKCGKLDYGLHTFR-- 276
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+ ++VSWTTI++ + G ++ F+RM+ + PN
Sbjct: 277 KMRTLDVVSWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNE 318
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 108/220 (49%), Gaps = 16/220 (7%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
+DS+ Y+ ++ N G +H K GF + +V +L MY G L
Sbjct: 215 YDSYAYAIALKASADSGALNHGRSIHTQTLKKGFDENSFVANSLTTMYNKCGKLDYGLHT 274
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F ++ ++V+W I+T Y +M + + L F+RM A P+E T A
Sbjct: 275 FRKMRTLDVVSWTTIVT----------AYIQMGKEDCGLQAFKRMRASNVI-PNEYTFSA 323
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGF-NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
V+ ++ + +H + GF NA + V+N ++ Y+KCG + S SK+F S+
Sbjct: 324 VISCCANFARLKWGEQLHAHVLCVGFVNA--LSVANSIMTLYSKCGELASVSKVF--CSM 379
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+++++W+TII+ ++ G G+EA E RM+ G KPN
Sbjct: 380 KFRDIITWSTIIAAYSQVGYGEEAFEYLSRMRSEGPKPNE 419
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 31/173 (17%)
Query: 70 VSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC 129
V LKD+ LFD+LP+R+ V+ WT II GY + S+EAL LF +M
Sbjct: 60 VKTNHLKDARDLFDQLPQRDEVS----------WTNIISGYVNSSDSSEALRLFSKMRL- 108
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQL---------IHGYGEKRGFNAFDIHVSNCLID 180
SE+ I L ++ ++ C L +HG+ K G + V + L+D
Sbjct: 109 ----QSELRIDPFLLSL----GLKTCGLGLNYLYGTNLHGFSVKTGL-VNSVFVGSALLD 159
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
Y K G I + K+F++ + +N V+WT +I+G G + + F M +
Sbjct: 160 MYMKIGEIGRSCKVFDE--MPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGR 210
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 37/219 (16%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
+ S P P + F + ++ C +++ G QLHA VG + V +AL MY
Sbjct: 410 MRSEGPKP---NEFALASVLSVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSALIIMYAK 466
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY 131
G + ++SK+F + + ++++W +I+ GY+ S EA+ LF +
Sbjct: 467 CGSIAEASKIFMDSWKDDIISWTAMIS----------GYAEHGHSQEAIELFENIQKVGL 516
Query: 132 TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF-----DIHVS------NCLID 180
P +T + VL A G V GF F D H++ C+ID
Sbjct: 517 -RPDSVTFIGVLTACSHAGMV-----------DLGFYYFNSMSKDYHITPSKEHYGCMID 564
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
+ G + A L + ++V W+T++ +HG
Sbjct: 565 LLCRAGRLHDAETLIRSMPIQWDDVV-WSTLLRACRIHG 602
>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 640
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 155/311 (49%), Gaps = 37/311 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ L++ C + LG +H+ K+G+ S V V+ L MY S G ++ + +F
Sbjct: 135 DVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVF 194
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
D PE + +WN++I G +V W+ +I+GY + +R E L
Sbjct: 195 DRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLG 254
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF+ M E EP+E ++ L A G + Q I Y E++ + + LID
Sbjct: 255 LFQDMMG-EKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVR-LTVRLGTALIDM 312
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
Y+KCG + A ++F + KN+++W+ +I+G A++G GK+A+ F +M+ G+KPN
Sbjct: 313 YSKCGSVERALEVFH--KMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGVKPNEV 370
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
IG +EG FF M + P+ H+ C++D+ RAG L+QA+ V
Sbjct: 371 TFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKS 430
Query: 291 IPSQITNVVVW 301
+P + N +W
Sbjct: 431 MPFK-PNSAIW 440
>gi|145335149|ref|NP_172066.3| protein pigment defective 247 [Arabidopsis thaliana]
gi|75191933|sp|Q9MA50.1|PPR13_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05750, chloroplastic; AltName: Full=Protein PIGMENT
DEFECTIVE 247; Flags: Precursor
gi|6850304|gb|AAF29381.1|AC009999_1 Contains similarity to a hypothetical protein from Arabidopsis
thaliana gb|AC007109.6, and contains two DUF17 PF|01535
domains [Arabidopsis thaliana]
gi|62320576|dbj|BAD95203.1| hypothetical protein [Arabidopsis thaliana]
gi|332189766|gb|AEE27887.1| protein pigment defective 247 [Arabidopsis thaliana]
Length = 500
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 156/313 (49%), Gaps = 39/313 (12%)
Query: 23 DSFTYSFLIRTC--VTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSS 79
+ T+ L+ C T LG LH K+G ++HV V TA+ MY G K +
Sbjct: 70 NHITFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKAR 129
Query: 80 KLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNE 118
+FD + ++N VTWN +I G L+ WT +I+G+ + E
Sbjct: 130 LVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEE 189
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
AL FR M +P + I+A L A G + +H Y + F ++ VSN L
Sbjct: 190 ALLWFREMQ-ISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKN-NVRVSNSL 247
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
ID Y +CGC+ A ++F + ++++ +VSW ++I GFA +G E++ F +MQ+ G KP
Sbjct: 248 IDLYCRCGCVEFARQVFYN--MEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKP 305
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ G EEGL++F M + + P I+HYGCL+D+ RAGRLE A ++
Sbjct: 306 DAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKL 365
Query: 288 ASGIPSQITNVVV 300
+P + VV+
Sbjct: 366 VQSMPMKPNEVVI 378
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 86/200 (43%), Gaps = 34/200 (17%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
+ C L + G +H F+++V V+ +L D+Y G ++ + ++F + +R +
Sbjct: 213 LNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTV 272
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
V+WN +I G++ ++E+L FR+M + +P +T L A G
Sbjct: 273 VSWNSVIV----------GFAANGNAHESLVYFRKMQEKGF-KPDAVTFTGALTACSHVG 321
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSN-----------CLIDTYAKCGCIFSASKLFEDTS 199
V + G F I + CL+D Y++ G + A KL +
Sbjct: 322 LV-----------EEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMP 370
Query: 200 VDRKNLVSWTTIISGFAMHG 219
+ + N V ++++ + HG
Sbjct: 371 M-KPNEVVIGSLLAACSNHG 389
>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 600
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 105/398 (26%), Positives = 180/398 (45%), Gaps = 109/398 (27%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
F V+ ++Q+ + + D+FTY FL++ C S+ + +H K+G S +Y
Sbjct: 102 FFVFSEMQRFGLFA--------DNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIY 153
Query: 61 VNTALGDMY---------------------------------VSLGFLKDSSKLFDELPE 87
V AL D Y V G L+D+ +LFDE+P+
Sbjct: 154 VPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQ 213
Query: 88 RNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALALFRRM 126
R+L++WN ++ G V W+ ++ GYS+ A +F +M
Sbjct: 214 RDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKM 273
Query: 127 A------------ACEYTEP--------------------SEITILAVLPAIWKNGEVRN 154
Y E ++++L A ++G +
Sbjct: 274 PLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSL 333
Query: 155 CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISG 214
IH ++ + + +V N L+D YAKCG + A +F D + +K+LVSW T++ G
Sbjct: 334 GMRIHSILKRSNLGS-NAYVLNALLDMYAKCGNLKKAFDVFND--IPKKDLVSWNTMLHG 390
Query: 215 FAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLP 263
+HG GKEA+E F RM++ G++P++ I +EG+ +F M + +++P
Sbjct: 391 LGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVP 450
Query: 264 DIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
++HYGCL+D+L R GRL++A +V +P + NVV+W
Sbjct: 451 QVEHYGCLVDLLGRVGRLKEAIKVVQTMPME-PNVVIW 487
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 106/215 (49%), Gaps = 17/215 (7%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD+ ++ C +LG ++H++ + S+ YV AL DMY G LK + +
Sbjct: 313 FDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDV 372
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+++P+++LV+WN ++ GL + G+ + EA+ LF RM E P ++T +A
Sbjct: 373 FNDIPKKDLVSWNTMLHGLG-----VHGHGK-----EAIELFSRMRR-EGIRPDKVTFIA 421
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAF-DIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
VL + G + + + Y ++ ++ + CL+D + G + A K+ + +
Sbjct: 422 VLCSCNHAGLIDE-GIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPM 480
Query: 201 DRKNLVSWTTIISGFAMHG---MGKEAVENFERMQ 232
+ N+V W ++ MH + KE ++N ++
Sbjct: 481 E-PNVVIWGALLGACRMHNEVDIAKEVLDNLVKLD 514
>gi|414870414|tpg|DAA48971.1| TPA: selenium-binding protein-like protein [Zea mays]
Length = 611
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 153/293 (52%), Gaps = 28/293 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++FT + L++ +L++ QLHA G + T+L Y + G + KLF
Sbjct: 137 NAFTLAILLKPRCSLAH---ARQLHANVVAEGHLRDALLATSLMRCYANRGDGDGARKLF 193
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY-TEPSEITILA 141
DE+P R+ V WNV+IT Y+R R+ +AL LF M + +EP ++T +
Sbjct: 194 DEMPVRDAVAWNVLITC----------YARNRRTKDALKLFEEMRGKDSESEPDDVTCIL 243
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+L A G + + + Y E+ G+ ++ V N LI Y +CGC+ A ++F T
Sbjct: 244 LLQACSSLGALDFGEQVWAYAEEHGYGG-ELKVRNSLITMYLRCGCVDKAYRVFSGTP-- 300
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
+K++V+WT +ISG A +G G +A+ FE M + + P+ G +EG +
Sbjct: 301 QKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFR 360
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
FFD M E + P+++HYGC++D++ RAG L++A E + + +WRT
Sbjct: 361 FFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPDATIWRT 413
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 91/220 (41%), Gaps = 36/220 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T L++ C +L + G Q+ A + G+ + V +L MY+ G + + ++F
Sbjct: 237 DDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYLRCGCVDKAYRVF 296
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
P++++VTW +I+GL +G+ N+A+++F M + P E T V
Sbjct: 297 SGTPQKSVVTWTAMISGLAA-----NGFG-----NDAISVFEEMIRSD-VAPDEQTFTGV 345
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFD-----------IHVSNCLIDTYAKCGCIFSA 191
L A +G V GF FD + C++D + G + A
Sbjct: 346 LSACSHSGLV-----------DEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEA 394
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENF 228
+ + + W T++ +HG +G+ + N
Sbjct: 395 YEFVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVIGNL 434
>gi|356501900|ref|XP_003519761.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g62890-like [Glycine max]
Length = 567
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 162/321 (50%), Gaps = 60/321 (18%)
Query: 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF 74
H+ LP D T+ FL+++ T P+ G QLHA +G + +V T+L +MY S G
Sbjct: 55 HAVLP---DLHTFPFLLQSINT---PHPGRQLHAQIFLLGLANDPFVQTSLINMYSSRGT 108
Query: 75 LKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRM 113
L + ++FDE+ + +L +WN II ++ W+ +I GY+
Sbjct: 109 LTFARQVFDEITQPDLPSWNAIIHANAKAGMIHIARKLFDQMPHRNVISWSCMIHGYASC 168
Query: 114 NRSNEALALFRRMAACEYT--EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD 171
AL+LFR + E + +P+E + G + + + +H Y +K G D
Sbjct: 169 GEYKAALSLFRSLQTLEGSKVQPNEXCA--------RLGALEHGKWVHAYIDKTGMK-ID 219
Query: 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
+ + LID YAKCG IF K++++W+ +I+ FAMHG+ +E +E F RM
Sbjct: 220 VVLGTSLIDMYAKCGXIFGP----------EKDVMAWSAMITAFAMHGLSEECLELFARM 269
Query: 232 QKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGR 280
G++PN +G EG ++F K ++E V P I+HYGC++D+ RAGR
Sbjct: 270 VNDGVRPNAVTFVGVLCACVHGGLVSEGNEYFKKRMKEYGVSPTIQHYGCIVDLYSRAGR 329
Query: 281 LEQAEEVASGIPSQITNVVVW 301
+E A V +P + +V++W
Sbjct: 330 IEDAWSVVKSMPVE-PDVMIW 349
>gi|226530803|ref|NP_001148047.1| LOC100281656 [Zea mays]
gi|195615502|gb|ACG29581.1| selenium-binding protein-like [Zea mays]
Length = 597
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 153/293 (52%), Gaps = 28/293 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++FT + L++ +L++ QLHA G + T+L Y + G + KLF
Sbjct: 123 NAFTLAILLKPRCSLAH---ARQLHANVVAEGHLRDALLATSLMRCYANRGDGDGARKLF 179
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY-TEPSEITILA 141
DE+P R+ V WNV+IT Y+R R+ +AL LF M + +EP ++T +
Sbjct: 180 DEMPVRDAVAWNVLITC----------YARNRRTKDALKLFEEMRGKDSESEPDDVTCIL 229
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+L A G + + + Y E+ G+ ++ V N LI Y +CGC+ A ++F T
Sbjct: 230 LLQACSSLGALDFGEQVWAYAEEHGYGG-ELKVRNSLITMYLRCGCVDKAYRVFSGTP-- 286
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
+K++V+WT +ISG A +G G +A+ FE M + + P+ G +EG +
Sbjct: 287 QKSVVTWTAMISGLAANGFGNDAISVFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFR 346
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
FFD M E + P+++HYGC++D++ RAG L++A E + + +WRT
Sbjct: 347 FFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYEFVTNEMKVAPDATIWRT 399
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 91/220 (41%), Gaps = 36/220 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T L++ C +L + G Q+ A + G+ + V +L MY+ G + + ++F
Sbjct: 223 DDVTCILLLQACSSLGALDFGEQVWAYAEEHGYGGELKVRNSLITMYLRCGCVDKAYRVF 282
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
P++++VTW +I+GL +G+ N+A+++F M + P E T V
Sbjct: 283 SGTPQKSVVTWTAMISGLAA-----NGFG-----NDAISVFEEMIRSDVA-PDEQTFTGV 331
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFD-----------IHVSNCLIDTYAKCGCIFSA 191
L A +G V GF FD + C++D + G + A
Sbjct: 332 LSACSHSGLV-----------DEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEA 380
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENF 228
+ + + W T++ +HG +G+ + N
Sbjct: 381 YEFVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVIGNL 420
>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 837
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 151/294 (51%), Gaps = 26/294 (8%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L + ++ S +++ C + + G Q+H K+G +S ++V AL D Y + S K
Sbjct: 361 LPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLK 420
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F L + N V+WN I+ G+S+ EAL++F M A + +++T
Sbjct: 421 IFSSLRDANEVSWNTIVV----------GFSQSGLGEEALSVFCEMQAAQ-MPCTQVTYS 469
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+VL A +R+ IH EK FN D + N LIDTYAKCG I A K+F+ +
Sbjct: 470 SVLRACASTASIRHAGQIHCSIEKSTFNN-DTVIGNSLIDTYAKCGYIRDALKVFQ--HL 526
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGL 249
++++SW IISG+A+HG +A+E F+RM K ++ N S + GL
Sbjct: 527 MERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGL 586
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
FD M + + P ++HY C++ +L RAGRL A + IPS + +VWR
Sbjct: 587 SLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSA-PSAMVWRA 639
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 102/230 (44%), Gaps = 26/230 (11%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF--QSHVYVNTALGDMYVSLGF 74
P P DSF + ++ C+ G +H + G + ++ L +MY LG
Sbjct: 52 PSVPGVDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGP 111
Query: 75 LKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM-----AAC 129
L + +LFD +PERN+V+ + ++ +++ A ALFRR+
Sbjct: 112 LASARRLFDRMPERNMVS----------FVTLVQAHAQRGDFEAAAALFRRLRWEGHEVN 161
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
++ + + + + A G V +C G+ NAF V + LID Y+ C +
Sbjct: 162 QFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDH----NAF---VGSGLIDAYSLCSLVS 214
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
A +F + RK+ V WT ++S ++ + + A F +M+ G KPN
Sbjct: 215 DAEHVF--NGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPN 262
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 18/219 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F + +++ + + L +H+ K+G + +V + L D Y + D+ +F
Sbjct: 161 NQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVF 220
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM--AACEYTEPSEITIL 140
+ + ++ V W T ++ YS + A +F +M + C +P+ +
Sbjct: 221 NGIVRKDAVVW----------TAMVSCYSENDCPENAFRVFSKMRVSGC---KPNPFALT 267
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+VL A V + IHG K N + HV L+D YAKCG I A FE
Sbjct: 268 SVLKAAVCLPSVVLGKGIHGCAIKT-LNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPY 326
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D L+S+ +IS +A ++A E F R+ + + PN
Sbjct: 327 DDVILLSF--MISRYAQSNQNEQAFELFLRLMRSSVLPN 363
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 65/130 (50%), Gaps = 19/130 (14%)
Query: 127 AACEYTEPSEITILAVLPAI---------------WKNGEVRNCQLIHGYGEKRG-FNAF 170
AA ++ E E+T LA+LP++ G+ R + +HG+ +RG
Sbjct: 36 AALQWLE-DELTSLAILPSVPGVDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRL 94
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
D+ +N L++ Y K G + SA +LF+ + +N+VS+ T++ A G + A F R
Sbjct: 95 DLFCANVLLNMYGKLGPLASARRLFD--RMPERNMVSFVTLVQAHAQRGDFEAAAALFRR 152
Query: 231 MQKVGLKPNR 240
++ G + N+
Sbjct: 153 LRWEGHEVNQ 162
>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 154/290 (53%), Gaps = 26/290 (8%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
+T+ ++R+C +LS +LG Q+HA K + +V TAL DMY FL+D+ +F+
Sbjct: 292 YTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNR 351
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
L +R+L W VI+ GY++ + +A+ F +M E +P+E T+ + L
Sbjct: 352 LIKRDLFAWTVIVA----------GYAQDGQGEKAVKCFIQMQR-EGVKPNEFTLASSLS 400
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
+ + + + +H K G + D+ V++ L+D YAKCGC+ A +F D V R +
Sbjct: 401 GCSRIATLDSGRQLHSMAIKAG-QSGDMFVASALVDMYAKCGCVEDAEVVF-DGLVSR-D 457
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFD 253
VSW TII G++ HG G +A++ FE M G P+ IG EEG K F+
Sbjct: 458 TVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFN 517
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ + + P I+HY C++DIL RAG+ + E + +NV++W T
Sbjct: 518 SLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMK-LTSNVLIWET 566
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 139/290 (47%), Gaps = 29/290 (10%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
+T+ +++TC + N G +H K G ++ +L ++Y G + K+F E
Sbjct: 192 YTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGE 251
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+PER++V+W +ITG V +GY L +F +M A E P+ T +++L
Sbjct: 252 IPERDVVSWTALITGFVA-----EGYG------SGLRIFNQMLA-EGFNPNMYTFISILR 299
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
+ +V + +H K + D V L+D YAK + A +F + +++
Sbjct: 300 SCSSLSDVDLGKQVHAQIVKNSLDGNDF-VGTALVDMYAKNRFLEDAETIF--NRLIKRD 356
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---------SWRIG--EEGLKFFD 253
L +WT I++G+A G G++AV+ F +MQ+ G+KPN RI + G +
Sbjct: 357 LFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHS 416
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++ + D+ L+D+ + G +E AE V G+ S+ T V W T
Sbjct: 417 MAIKAGQS-GDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDT--VSWNT 463
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 119/259 (45%), Gaps = 26/259 (10%)
Query: 7 LQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALG 66
+Q Y+ H+ + + F ++ LI +L + G +HA K GF+S + ++ A
Sbjct: 75 VQLFYLMRHTRIR--LNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFV 132
Query: 67 DMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM 126
MY+ +++ + F + NL + N +++G T D R+ L + +
Sbjct: 133 TMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCD-TETCDQGPRI--------LIQLL 183
Query: 127 AACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG 186
E EP+ T +++L G++ + IHG K G N D H+ N L++ YAKCG
Sbjct: 184 V--EGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINP-DSHLWNSLVNVYAKCG 240
Query: 187 CIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGE 246
A K+F + + +++VSWT +I+GF G G + F +M G PN
Sbjct: 241 SANYACKVFGE--IPERDVVSWTALITGFVAEGYGS-GLRIFNQMLAEGFNPN------- 290
Query: 247 EGLKFFDKMVEECEVLPDI 265
+ F ++ C L D+
Sbjct: 291 --MYTFISILRSCSSLSDV 307
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 28/205 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT + + C ++ + G QLH++ K G ++V +AL DMY G ++D+ +F
Sbjct: 391 NEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVF 450
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D L R+ V+WN II GYS+ + +AL F M E T P E+T + V
Sbjct: 451 DGLVSRDTVSWNTIIC----------GYSQHGQGGKALKAFEAMLD-EGTVPDEVTFIGV 499
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFD--------IHVSNCLIDTYAKCGCIFSASKL 194
L A G + K+ FN+ I C++D + G
Sbjct: 500 LSACSHMGLIEE--------GKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESF 551
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHG 219
E+ + N++ W T++ MHG
Sbjct: 552 IEEMKL-TSNVLIWETVLGACKMHG 575
>gi|297846320|ref|XP_002891041.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297336883|gb|EFH67300.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 586
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 164/318 (51%), Gaps = 40/318 (12%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS-LGFLKDS 78
P + F Y ++++ LS +H K GF +V V TAL Y S + + +
Sbjct: 122 PRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYASSVSHITLA 181
Query: 79 SKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSN 117
+LFDE+ ERN+V+W +++G + W I+ ++
Sbjct: 182 RQLFDEMSERNVVSWTAMLSGYARSGDIFNAVALFEEMPERDVPSWNAILAACTQNGLFV 241
Query: 118 EALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
EA++LFRRM P+E+T++ VL A + G ++ + IH + +R ++ D+ VSN
Sbjct: 242 EAVSLFRRMINDPCIRPNEVTLVCVLSACAQTGTLQLAKGIHAFAYRRNLSS-DVFVSNS 300
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-- 235
L+D Y KCG + AS +F+ +S +K+L +W ++I+ FA+HG +EA+ FE M K+
Sbjct: 301 LVDLYGKCGNLEEASSVFKMSS--KKSLTAWNSMINCFALHGRSEEAIAVFEDMMKLNSH 358
Query: 236 -LKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQ 283
+KP+ IG +G +FD M + + P I+HYGCLID+L RAG+ ++
Sbjct: 359 DIKPDHITFIGLLNACTHGGLVSKGRGYFDLMKKRFGIEPRIEHYGCLIDLLGRAGQFDE 418
Query: 284 AEEVASGIPSQITNVVVW 301
A E S + + + +W
Sbjct: 419 ALETMSTMKME-ADEAIW 435
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 25/201 (12%)
Query: 103 WTGIIDGYSRMN--RSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHG 160
+ ++ GYS ++ A + FR M + P+ VL + + L+H
Sbjct: 91 YAAVLTGYSSSLPLHASSAFSFFRLMVNRSFPRPNHFIYPLVLKSTPYLSSAFSTPLVHT 150
Query: 161 YGEKRGFNAFDIHVSNCLIDTYA-KCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
+ K GF+ + + V L+ +YA I A +LF++ S +N+VSWT ++SG+A G
Sbjct: 151 HLFKSGFHLYVV-VQTALLHSYASSVSHITLARQLFDEMS--ERNVVSWTAMLSGYARSG 207
Query: 220 MGKEAVENFERMQKVGLKPNR---SWR----------IGEEGLKFFDKMVEECEVLPDIK 266
AV FE M P R SW + E + F +M+ + + P+
Sbjct: 208 DIFNAVALFEEM------PERDVPSWNAILAACTQNGLFVEAVSLFRRMINDPCIRPNEV 261
Query: 267 HYGCLIDILERAGRLEQAEEV 287
C++ + G L+ A+ +
Sbjct: 262 TLVCVLSACAQTGTLQLAKGI 282
>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
Length = 771
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 151/290 (52%), Gaps = 26/290 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T LI C LG QLHA + GF + + TAL DMY ++++ LF
Sbjct: 297 NEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALF 356
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D R+++ W T ++ Y++ N ++A LF +M P+++TI+++
Sbjct: 357 DSTQNRDVMIW----------TAMLSAYAQANCIDQAFNLFDQMRT-SGVRPTKVTIVSL 405
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L G + + +H Y +K D ++ L+D YAKCG I +A +LF
Sbjct: 406 LSLCAVAGALDLGKWVHSYIDKERVE-VDCILNTALVDMYAKCGDINAAGRLF--IEAIS 462
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+++ W II+GFAMHG G+EA++ F M++ G+KPN IG EG K
Sbjct: 463 RDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKL 522
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F+KMV ++P I+HYGC++D+L RAG L++A E+ +P + N +VW
Sbjct: 523 FEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIK-PNTIVW 571
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 106/217 (48%), Gaps = 14/217 (6%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
+F +++ C +S+ LG ++H K G V+V AL MY ++ + +FD
Sbjct: 94 NFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFD 153
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
++ ER++V+W+ +I L SR + AL L R M + PSE+ +++++
Sbjct: 154 KMMERDVVSWSTMIRSL----------SRNKEFDMALELIREMNFMQ-VRPSEVAMVSMV 202
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNA-FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+R + +H Y + N + + L+D YAKCG + A +LF + +
Sbjct: 203 NLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLF--NGLTQ 260
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
K +VSWT +I+G +E + F RMQ+ + PN
Sbjct: 261 KTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPN 297
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 102/201 (50%), Gaps = 16/201 (7%)
Query: 42 LGTQLHAVFSKVGFQSHVYV--NTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG 99
+G +HA + H+ V TAL DMY G L + +LF+ L ++ +V+W +I G
Sbjct: 213 MGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAG 272
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
+ R NR E LF RM E P+EIT+L+++ G ++ + +H
Sbjct: 273 CI----------RSNRLEEGTKLFIRMQE-ENIFPNEITMLSLIVECGFTGALQLGKQLH 321
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
Y + GF + + ++ L+D Y KC I +A LF+ T ++++ WT ++S +A
Sbjct: 322 AYILRNGF-SVSLALATALVDMYGKCSDIRNARALFDSTQ--NRDVMIWTAMLSAYAQAN 378
Query: 220 MGKEAVENFERMQKVGLKPNR 240
+A F++M+ G++P +
Sbjct: 379 CIDQAFNLFDQMRTSGVRPTK 399
>gi|297800176|ref|XP_002867972.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313808|gb|EFH44231.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 535
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 94/347 (27%), Positives = 166/347 (47%), Gaps = 67/347 (19%)
Query: 18 LPPLF-DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY------- 69
L P+F D ++++F+++ C G Q+H +F K + V+V L ++Y
Sbjct: 103 LGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFMKSDLVTDVFVENTLINVYGRSGYFE 162
Query: 70 ------------------------VSLGFLKDSSKLFDELPERNLVTWNVIITG------ 99
+ G ++++ LFDE+ ERN+ +WN +I+G
Sbjct: 163 IARKVLDRMPVRDAVSWNSLLSAYLDKGLVEEARALFDEMEERNVESWNFMISGYAAAGL 222
Query: 100 ---------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+V W ++ Y+ + NE L +F M P T++ VL
Sbjct: 223 VKEAREVFDSMPVKDVVSWNAMVTAYAHVGCYNEVLEVFNMMLDDSAERPDGFTLVNVLS 282
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A G + + +H Y +K G + V+ L+D Y+KCG I A ++F DTS +++
Sbjct: 283 ACASLGSLSQGEWVHVYIDKHGIE-IEGFVATALVDMYSKCGKIDKALEVFRDTS--KRD 339
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFD 253
+ +W +II+G ++HG+GK+A+E F M G KPN IG ++ K F+
Sbjct: 340 VSTWNSIITGLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGLLDQARKLFE 399
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
M + P I+HYGC++D+L R G+ E+AEE+ + +P+ ++++
Sbjct: 400 MMNSVYGIEPTIEHYGCMVDLLGRMGKFEEAEELVNEVPADEASILL 446
>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g47840 [Vitis vinifera]
Length = 713
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 155/292 (53%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ +T++ +I C L+ G QLHA+ +G + + V ++ MY G L SS +F
Sbjct: 317 NEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIF 376
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E+ R++V+W+ II G YS+ +EA L M E +P+E + +V
Sbjct: 377 HEMTRRDIVSWSTIIAG----------YSQGGHVSEAFELLSWMRM-EGPKPTEFALASV 425
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + + + +H Y G + V + LI+ Y KCG I AS++F+ + +
Sbjct: 426 LSACGNMAILEHGKQLHAYVLSIGLEHTAM-VLSALINMYCKCGSIEEASRIFD--AAEN 482
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
++VSWT +I+G+A HG +E ++ FE++ +VGL+P+ IG + G ++
Sbjct: 483 DDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFRY 542
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ M ++ ++ P +HYGC+ID+L RAGRL AE + +P + VVW T
Sbjct: 543 FNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDD-VVWST 593
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 106/218 (48%), Gaps = 14/218 (6%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D F S + C S N G LH K G + V+V +AL DMY G + + ++
Sbjct: 114 IDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRV 173
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F E+P RN+V+W IITGLV+ GY++ EAL F M E T
Sbjct: 174 FHEMPMRNVVSWTAIITGLVR-----AGYNK-----EALVYFSEMWRSR-VEYDSYTFAI 222
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A +G + + IH K+GF+ V+N L Y KCG + LFE S+
Sbjct: 223 ALKACADSGALNYGREIHAQAMKKGFDVSSF-VANTLATMYNKCGKLEYGLTLFEKMSM- 280
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+++VSWTTII+ G + AV+ F RM++ + PN
Sbjct: 281 -RDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPN 317
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 108/217 (49%), Gaps = 14/217 (6%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
+DS+T++ ++ C N G ++HA K GF +V L MY G L+ L
Sbjct: 215 YDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTL 274
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+++ R++V+W IIT LV+ M + A+ F RM + + P+E T A
Sbjct: 275 FEKMSMRDVVSWTTIITTLVQ----------MGQEECAVQAFIRMRESDVS-PNEYTFAA 323
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
V+ + + +H G A + V N ++ YAKCG + S+S +F + +
Sbjct: 324 VISGCANLARIEWGEQLHALILHLGLAA-SLSVENSIMTMYAKCGQLTSSSVIFHEMT-- 380
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
R+++VSW+TII+G++ G EA E M+ G KP
Sbjct: 381 RRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPKP 417
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 13/162 (8%)
Query: 70 VSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC 129
V G L ++ ++FD++ +++ ++W T +I GY N S+EAL LF+ M
Sbjct: 60 VKTGHLGNARRMFDKMSQKDEISW----------TTLISGYVNANDSSEALLLFKNMRVE 109
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
+ A N +V +L+HGY K G + V + L+D Y K G IF
Sbjct: 110 SGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGL-VNSVFVGSALLDMYTKNGKIF 168
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
++F + + +N+VSWT II+G G KEA+ F M
Sbjct: 169 EGRRVFHEMPM--RNVVSWTAIITGLVRAGYNKEALVYFSEM 208
>gi|225452668|ref|XP_002276684.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g28640-like [Vitis vinifera]
Length = 511
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 150/292 (51%), Gaps = 27/292 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKL 81
D T+ F+I C + LG Q+H K G S +V TAL Y + D+ KL
Sbjct: 104 DQHTFPFIISACTNSLWMLLGKQIHNWVLKNGVASSDRHVQTALVRFYAECCAMGDARKL 163
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FDE+P ++V WNV++ +GY R + EAL FR M EP E +
Sbjct: 164 FDEIPNLDVVQWNVLL----------NGYVRRGLAPEALNAFRNMLV-SGVEPDEFCLTT 212
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L + G ++ + IH Y KR + D+ + L+D YAKCGCI + ++FE +
Sbjct: 213 ALKGCAQLGALQQGKWIHEYVTKRKWLEADVFIGTALVDMYAKCGCIDRSVEVFEGMT-- 270
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQ-KVGLKPNRSWRIG-----------EEGL 249
++N+ SW+ +I GFA+HG ++A++ ERMQ + GL+P+ +G EEG
Sbjct: 271 KRNVFSWSAMIGGFALHGHVRKAMQCLERMQVEDGLRPDGVVLLGVIMACAHAGLQEEGQ 330
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ M +LP +HY C++D+L RAG+L++A ++ +P + VW
Sbjct: 331 FLLENMEARYGILPKHEHYSCMVDLLCRAGQLDEALKLIRRMPMK-PRAAVW 381
>gi|297741134|emb|CBI31865.3| unnamed protein product [Vitis vinifera]
Length = 573
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 144/271 (53%), Gaps = 26/271 (9%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T+ ++ C + Y ++G +H + K F + V AL DMYV L ++ KLFDEL
Sbjct: 205 TFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCECLCEARKLFDEL 264
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
P+R++V+W II+GLV+ + ++L LF M EP I + +VL A
Sbjct: 265 PDRDIVSWTSIISGLVQ----------CKQPKDSLELFYDMQI-SGVEPDRIILTSVLSA 313
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
G + + + Y E++G +DIH+ L+D YAKCGCI A +F + +N+
Sbjct: 314 CASLGALDYGRWVQEYIERQGIE-WDIHIGTALVDMYAKCGCIEMALHIF--NGIPNRNI 370
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDK 254
+W ++ G AMHG G EA+++FE M G++PN + EG +F +
Sbjct: 371 FTWNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQ 430
Query: 255 MVEE-CEVLPDIKHYGCLIDILERAGRLEQA 284
M+ + P ++HYGC+ID+L RAG L++A
Sbjct: 431 MISQPFNFSPRLEHYGCMIDLLCRAGLLDEA 461
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 144/292 (49%), Gaps = 31/292 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +T+ +++ C G Q+H V K+GF +YV +L Y G + ++F
Sbjct: 104 DMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGKWGGAGRVF 163
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ R++V+ WTG+I GY R +EA+ LF +M P+ T ++V
Sbjct: 164 DEMLVRDVVS----------WTGLISGYVRTGLFDEAINLFLKMDVV----PNVATFVSV 209
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + G + + +HG KR F + V N L+D Y KC C+ A KLF++ +
Sbjct: 210 LVACGRMGYLSMGKGVHGLVYKRAF-GIGLVVGNALVDMYVKCECLCEARKLFDE--LPD 266
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKF 251
+++VSWT+IISG K+++E F MQ G++P+R S + G ++
Sbjct: 267 RDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYG-RW 325
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ +E + DI L+D+ + G +E A + +GIP++ N+ W
Sbjct: 326 VQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNR--NIFTWNA 375
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 11/130 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D + ++ C +L + G + + G + +++ TAL DMY G ++ + +F
Sbjct: 303 DRIILTSVLSACASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIF 362
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ +P RN+ TWN ++ GL + +EAL F M P+E+T LA+
Sbjct: 363 NGIPNRNIFTWNALLGGL----------AMHGHGHEALKHFELMIGAG-IRPNEVTFLAI 411
Query: 143 LPAIWKNGEV 152
L A +G V
Sbjct: 412 LTACCHSGLV 421
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 91/196 (46%), Gaps = 17/196 (8%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMY-VSLGFLKDSSKLFDELPERNLVTWNVIITGLVKW 103
Q+HA G +V + + + + +GF+ + FD L + +L G + +
Sbjct: 23 QIHAHLIASGLLHDEFVLSKVSEFFGKHIGFVDYA---FDFLNQTDLHV------GTLPY 73
Query: 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGE 163
+I Y+ A ++ R+ + P T VL A K V+ + +HG
Sbjct: 74 NTLIAAYASSCTPKAAFLVYGRIVGNGFV-PDMYTFPVVLKACTKFLGVQEGEQVHGVAV 132
Query: 164 KRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKE 223
K GF D++V N L+ Y+ CG A ++F++ V +++VSWT +ISG+ G+ E
Sbjct: 133 KMGFLC-DLYVQNSLLHFYSVCGKWGGAGRVFDEMLV--RDVVSWTGLISGYVRTGLFDE 189
Query: 224 AVENFERMQKVGLKPN 239
A+ F +M V PN
Sbjct: 190 AINLFLKMDVV---PN 202
>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
Length = 640
Score = 154 bits (390), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 137/266 (51%), Gaps = 24/266 (9%)
Query: 49 VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIID 108
+F + HV TA+ Y +G L D+ LFD LP ++L+ WN ++ D
Sbjct: 183 LFDGMQPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLICWNAMM----------D 232
Query: 109 GYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN 168
GY++ R +EAL LFRRM EP E++++ L A+ + G + + +H +
Sbjct: 233 GYTQHGRPSEALRLFRRMLR-SGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVTNSSSR 291
Query: 169 A--FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVE 226
+ V LID Y KCG + A +F D +++V+W +++G+AMHG +EA+
Sbjct: 292 RVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHGHSREALA 351
Query: 227 NFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDIL 275
F +++ GL P IG +EG + F M EE + P ++HYGC++D+L
Sbjct: 352 AFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEHYGCMVDLL 411
Query: 276 ERAGRLEQAEEVASGIPSQITNVVVW 301
RAGR+E+A E+ + + V+W
Sbjct: 412 GRAGRVEEAFELVQSMTRTKPDAVMW 437
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 22/177 (12%)
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELP--ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNE 118
V TAL DMY G L+D+ +F +L +R++V WN ++ +GY+ S E
Sbjct: 299 VGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMV----------NGYAMHGHSRE 348
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNC 177
ALA F ++ A + P++IT + VL A +G V +L E+ G H C
Sbjct: 349 ALAAFGQLRA-QGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEHY-GC 406
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
++D + G + A +L + + + + V W ++++ +H +N E Q++
Sbjct: 407 MVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLH-------KNMELGQRI 456
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 71/314 (22%), Positives = 113/314 (35%), Gaps = 64/314 (20%)
Query: 44 TQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKW 103
++LHA + G V+ L Y + G L + L P+ V +
Sbjct: 47 SELHAAAVRAGVDQDKAVDFRLQRAYAASGRLDLAVALLRRTPDPTAVFY---------- 96
Query: 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGE 163
T I +S + ALAL M P+ T+ A LPA G + + +HGY
Sbjct: 97 TSAIHAHSSRGLHHAALALLSEMLLSHGLLPTAHTLSASLPAC---GGLAVGRALHGYAV 153
Query: 164 KRGFNAF-----------------------------DIHVSN--CLIDTYAKCGCIFSAS 192
K + D HV + ++ YAK G + A
Sbjct: 154 KLALSGEPYVATALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAMLTCYAKMGLLDDAR 213
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------S 241
LF+ + K+L+ W ++ G+ HG EA+ F RM + G++P+
Sbjct: 214 SLFD--GLPSKDLICWNAMMDGYTQHGRPSEALRLFRRMLRSGVEPDEVSVVLALSAVAQ 271
Query: 242 WRIGEEG--LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVV 299
E G L F V + + LID+ + G LE A V + + ++V
Sbjct: 272 LGTAESGRWLHSFVTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIV 331
Query: 300 VWRTGFLRLLINSY 313
W ++N Y
Sbjct: 332 AWNA-----MVNGY 340
>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
Length = 1133
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 103/329 (31%), Positives = 157/329 (47%), Gaps = 54/329 (16%)
Query: 21 LFDSFTYSFLIRTCVT-----------LSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY 69
LF +SFL T L + N+G + H + GF VYV T+L DMY
Sbjct: 611 LFRKMQFSFLKAETATIVRVLQASISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMY 670
Query: 70 VSLGFLKDSSKLFDELPERNLVTWNVIITG-------------------------LVKWT 104
V L + +FD + RN+ WN +++G LV W
Sbjct: 671 VKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWN 730
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
G+I GY+ EALA F +M E P+ +I +L A ++ + IH +
Sbjct: 731 GMISGYAMWGCGKEALAFFAQMQQ-EGVMPNSASITCLLRACASLSLLQKGKEIHCLSIR 789
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
GF D+ V+ LID Y+K + +A K+F + K L SW +I GFA+ G+GKEA
Sbjct: 790 NGFIE-DVFVATALIDMYSKSSSLKNAHKVFR--RIQNKTLASWNCMIMGFAIFGLGKEA 846
Query: 225 VENFERMQKVGLKPN------------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLI 272
+ F MQKVG+ P+ S IG EG K+FD M+ + ++P ++HY C++
Sbjct: 847 ISVFNEMQKVGVGPDAITFTALLSACKNSGLIG-EGWKYFDSMITDYRIVPRLEHYCCMV 905
Query: 273 DILERAGRLEQAEEVASGIPSQITNVVVW 301
D+L RAG L++A ++ +P + + +W
Sbjct: 906 DLLGRAGYLDEAWDLIHTMPLK-PDATIW 933
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 88/325 (27%), Positives = 155/325 (47%), Gaps = 44/325 (13%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
+FDS YS ++TC + LG ++H K GF VY+ AL + Y L+ +++
Sbjct: 520 VFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQ 579
Query: 81 LFDELPERNLVTWN-VIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
+F E+P + WN II L + + + + LFR+M + + TI
Sbjct: 580 VFHEMPNPEALLWNEAIILNL-----------QSEKLQKGVELFRKM-QFSFLKAETATI 627
Query: 140 LAVLPA-IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+ VL A I + G + + HGY + GF+ D++V LID Y K + SA +F++
Sbjct: 628 VRVLQASISELGFLNMGKETHGYVLRNGFDC-DVYVGTSLIDMYVKNHSLTSAQAVFDN- 685
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEE 247
+ +N+ +W +++SG++ GM ++A+ +M+K G+KP+ W G+E
Sbjct: 686 -MKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKE 744
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLR 307
L FF +M +E V+P+ CL+ L++ +E+ + + R GF+
Sbjct: 745 ALAFFAQMQQEG-VMPNSASITCLLRACASLSLLQKGKEI---------HCLSIRNGFIE 794
Query: 308 ------LLINSYFFSPITLNSQRLF 326
LI+ Y S N+ ++F
Sbjct: 795 DVFVATALIDMYSKSSSLKNAHKVF 819
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 36/230 (15%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S + + L+R C +LS G ++H + + GF V+V TAL DMY LK++ K+F
Sbjct: 760 NSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVF 819
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + L +WN +I G++ EA+++F M P IT A+
Sbjct: 820 RRIQNKTLASWNCMIM----------GFAIFGLGKEAISVFNEMQKVG-VGPDAITFTAL 868
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN-----------CLIDTYAKCGCIFSA 191
L A +N LI GE G+ FD +++ C++D + G + A
Sbjct: 869 LSA------CKNSGLI---GE--GWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEA 917
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
L + + + W ++ +H K A + + K L+PN S
Sbjct: 918 WDLIHTMPL-KPDATIWGALLGSCRIHKNLKFAETAAKNLFK--LEPNNS 964
>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1005
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 154/290 (53%), Gaps = 26/290 (8%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
+T+ ++R+C +LS +LG Q+HA K + +V TAL DMY FL+D+ +F+
Sbjct: 533 YTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNR 592
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
L +R+L W VI+ GY++ + +A+ F +M E +P+E T+ + L
Sbjct: 593 LIKRDLFAWTVIVA----------GYAQDGQGEKAVKCFIQMQR-EGVKPNEFTLASSLS 641
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
+ + + + +H K G + D+ V++ L+D YAKCGC+ A +F D V R +
Sbjct: 642 GCSRIATLDSGRQLHSMAIKAG-QSGDMFVASALVDMYAKCGCVEDAEVVF-DGLVSR-D 698
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFD 253
VSW TII G++ HG G +A++ FE M G P+ IG EEG K F+
Sbjct: 699 TVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFN 758
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ + + P I+HY C++DIL RAG+ + E + +NV++W T
Sbjct: 759 SLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEM-KLTSNVLIWET 807
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 115/218 (52%), Gaps = 14/218 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FTY+ ++ C G Q+HA KVG S ++V +AL D+Y G + + ++F
Sbjct: 228 NEFTYATALKACSMCLDLEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVF 287
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+P++N V+WN +++G+++M + + L LF RM E S+ T+ V
Sbjct: 288 LCMPKQNAVSWN----------ALLNGFAQMGDAEKVLNLFCRMTGSEIN-FSKFTLSTV 336
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L +G +R Q++H + G D +S CL+D Y+KCG A K+F ++
Sbjct: 337 LKGCANSGNLRAGQIVHSLAIRIGCE-LDEFISCCLVDMYSKCGLAGDALKVF--VRIED 393
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
++VSW+ II+ G +EA E F+RM+ G+ PN+
Sbjct: 394 PDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQ 431
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 139/299 (46%), Gaps = 28/299 (9%)
Query: 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF 74
HS + P + FT + L+ L G +HA K GF+ V AL MY+ +G
Sbjct: 424 HSGVIP--NQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGS 481
Query: 75 LKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134
++D ++F+ R+L++WN +++ G+ + L +F +M A E P
Sbjct: 482 VQDGCRVFEATTNRDLISWNALLS----------GFHDNETCDTGLRIFNQMLA-EGFNP 530
Query: 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
+ T +++L + +V + +H K + D V L+D YAK + A +
Sbjct: 531 NMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDF-VGTALVDMYAKNRFLEDAETI 589
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---------SWRIG 245
F + +++L +WT I++G+A G G++AV+ F +MQ+ G+KPN RI
Sbjct: 590 F--NRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIA 647
Query: 246 E-EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ + M + D+ L+D+ + G +E AE V G+ S+ T V W T
Sbjct: 648 TLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDT--VSWNT 704
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 14/205 (6%)
Query: 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP 86
YS ++RTC + N G +H K G ++ +L ++Y G + K+F E+P
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190
Query: 87 ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI 146
ER++V+W +ITG V +GY + A+ LF M E E +E T L A
Sbjct: 191 ERDVVSWTALITGFVA-----EGY-----GSGAVNLFCEMRR-EGVEANEFTYATALKAC 239
Query: 147 WKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLV 206
++ + +H K G + D+ V + L+D YAKCG + A ++F + ++N V
Sbjct: 240 SMCLDLEFGKQVHAEAIKVG-DFSDLFVGSALVDLYAKCGEMVLAERVF--LCMPKQNAV 296
Query: 207 SWTTIISGFAMHGMGKEAVENFERM 231
SW +++GFA G ++ + F RM
Sbjct: 297 SWNALLNGFAQMGDAEKVLNLFCRM 321
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 113/244 (46%), Gaps = 23/244 (9%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
F FT S +++ C G +H++ ++G + +++ L DMY G D+ K+
Sbjct: 328 FSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKV 387
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F + + ++V+W+ IIT L + +S EA +F+RM P++ T+ +
Sbjct: 388 FVRIEDPDVVSWSAIITCL----------DQKGQSREAAEVFKRMRHSGVI-PNQFTLAS 436
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
++ A G++ + IH K GF +D V N L+ Y K G + ++FE T+
Sbjct: 437 LVSAATDLGDLYYGESIHACVCKYGFE-YDNTVCNALVTMYMKIGSVQDGCRVFEATT-- 493
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEV 261
++L+SW ++SGF + + F +M G PN + F ++ C
Sbjct: 494 NRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPN---------MYTFISILRSCSS 544
Query: 262 LPDI 265
L D+
Sbjct: 545 LSDV 548
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 28/205 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT + + C ++ + G QLH++ K G ++V +AL DMY G ++D+ +F
Sbjct: 632 NEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVF 691
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D L R+ V+WN II GYS+ + +AL F M E T P E+T + V
Sbjct: 692 DGLVSRDTVSWNTIIC----------GYSQHGQGGKALKAFEAMLD-EGTVPDEVTFIGV 740
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFD--------IHVSNCLIDTYAKCGCIFSASKL 194
L A G + K+ FN+ I C++D + G
Sbjct: 741 LSACSHMGLIEE--------GKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESF 792
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHG 219
E+ + N++ W T++ MHG
Sbjct: 793 IEEMKL-TSNVLIWETVLGACKMHG 816
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 18/181 (9%)
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+L G++ + IHG K G N D H+ N L++ YAKCG A K+F + +
Sbjct: 133 GMLRTCASKGDLNEGKAIHGQVIKSGINP-DSHLWNSLVNVYAKCGSANYACKVFGE--I 189
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-SWRIGEEG------LKFFD 253
+++VSWT +I+GF G G AV F M++ G++ N ++ + L+F
Sbjct: 190 PERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGK 249
Query: 254 KMVEECEVLPDIKHY---GCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT---GFLR 307
++ E + D L+D+ + G + AE V +P Q N V W GF +
Sbjct: 250 QVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQ--NAVSWNALLNGFAQ 307
Query: 308 L 308
+
Sbjct: 308 M 308
>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
Length = 818
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 151/294 (51%), Gaps = 26/294 (8%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L + ++ S +++ C + + G Q+H K+G +S ++V AL D Y + S K
Sbjct: 342 LPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLK 401
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F L + N V+WN I+ G+S+ EAL++F M A + +++T
Sbjct: 402 IFSSLRDANEVSWNTIVV----------GFSQSGLGEEALSVFCEMQAAQMP-CTQVTYS 450
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+VL A +R+ IH EK FN D + N LIDTYAKCG I A K+F+ +
Sbjct: 451 SVLRACASTASIRHAGQIHCSIEKSTFNN-DTVIGNSLIDTYAKCGYIRDALKVFQ--HL 507
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGL 249
++++SW IISG+A+HG +A+E F+RM K ++ N S + GL
Sbjct: 508 MERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGL 567
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
FD M + + P ++HY C++ +L RAGRL A + IPS + +VWR
Sbjct: 568 SLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSA-PSAMVWRA 620
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 118/283 (41%), Gaps = 35/283 (12%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF--QSHVYVNTALGDMYVSLGF 74
P P DSF + ++ C+ G +H + G + ++ L +MY LG
Sbjct: 52 PSVPGVDSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGP 111
Query: 75 LKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM-----AAC 129
L + +LFD +PERN+V+ + ++ +++ A ALFRR+
Sbjct: 112 LASARRLFDRMPERNMVS----------FVTLVQAHAQRGDFEAAAALFRRLRWEGHEVN 161
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
++ + + + + A G V +C G+ NAF V + LID Y+ C +
Sbjct: 162 QFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDH----NAF---VGSGLIDAYSLCSLVS 214
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGL 249
A +F + RK+ V WT ++S ++ + + A F Q L R G G
Sbjct: 215 DAEHVF--NGIVRKDAVVWTAMVSCYSENDCPENA---FRCAQSCSLLAISCARQGIHGC 269
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
K + + E P + G L+D+ + G ++ A IP
Sbjct: 270 AI--KTLNDTE--PHVG--GALLDMYAKCGDIKDARLAFEMIP 306
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 33/217 (15%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F + +++ + + L +H+ K+G + +V + L D Y + D+ +F
Sbjct: 161 NQFVLTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVF 220
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + ++ V W T ++ YS + A FR +C ++LA+
Sbjct: 221 NGIVRKDAVVW----------TAMVSCYSENDCPENA---FRCAQSC--------SLLAI 259
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
A Q IHG K N + HV L+D YAKCG I A FE D
Sbjct: 260 SCAR---------QGIHGCAIKT-LNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDD 309
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
L+S+ +IS +A ++A E F R+ + + PN
Sbjct: 310 VILLSF--MISRYAQSNQNEQAFELFLRLMRSSVLPN 344
>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g49170, chloroplastic-like [Cucumis sativus]
Length = 849
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 152/292 (52%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT+S ++ C L+ +G Q+ K+GF S V +L MY G + D+ K F
Sbjct: 375 NHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAF 434
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D L E+NL+++N +ID Y++ S EAL LF + + S T ++
Sbjct: 435 DILFEKNLISYNT----------VIDAYAKNLNSEEALELFNEIED-QGMGASAFTFASL 483
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L G + + IH K G + V N LI Y++CG I SA ++FED ++
Sbjct: 484 LSGAASIGTIGKGEQIHARVIKSGLK-LNQSVCNALISMYSRCGNIESAFQVFED--MED 540
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+N++SWT+II+GFA HG +A+E F +M + G++PN I EG K
Sbjct: 541 RNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKH 600
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F M E V+P ++HY C++DIL R+G L +A + + +P + + +VWRT
Sbjct: 601 FKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYK-ADALVWRT 651
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 132/289 (45%), Gaps = 46/289 (15%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYVS-LGFLKDSSK 80
+ + ++ R C T + ++G + K G+ QS V V L DM+V G L + K
Sbjct: 167 NEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFK 226
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F+++PERN VTW ++IT L+++ GY + EA+ LF M Y EP T+
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQF-----GY-----AGEAIDLFLDMIFSGY-EPDRFTLS 275
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC---GCIFSASKLFED 197
V+ A + Q +H + G D V CLI+ YAKC G + +A K+F D
Sbjct: 276 GVISACANMELLLLGQQLHSQAIRHGLT-LDRCVGCCLINMYAKCSVDGSMCAARKIF-D 333
Query: 198 TSVDRKNLVSWTTIISGFAMH-GMGKEAVENFERMQKVGLKPNR--------------SW 242
+D N+ SWT +I+G+ G +EA++ F M + PN +
Sbjct: 334 QILDH-NVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAAL 392
Query: 243 RIGEEGLKFFDKMVEECEVLPDIKHYGC----LIDILERAGRLEQAEEV 287
RIGE+ K+ C LI + R+GR++ A +
Sbjct: 393 RIGEQVFTHAVKL--------GFSSVNCVANSLISMYARSGRIDDARKA 433
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 103/218 (47%), Gaps = 18/218 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL---GFLKDSS 79
D FT S +I C + LG QLH+ + G V L +MY G + +
Sbjct: 270 DRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAAR 329
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGY-SRMNRSNEALALFRRMAACEYTEPSEIT 138
K+FD++ + N+ +W +IT GY + EAL LFR M + P+ T
Sbjct: 330 KIFDQILDHNVFSWTAMIT----------GYVQKGGYDEEALDLFRGMIL-THVIPNHFT 378
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+ L A +R + + + K GF++ + V+N LI YA+ G I A K F+
Sbjct: 379 FSSTLKACANLAALRIGEQVFTHAVKLGFSSVNC-VANSLISMYARSGRIDDARKAFD-- 435
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
+ KNL+S+ T+I +A + +EA+E F ++ G+
Sbjct: 436 ILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGM 473
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 29/213 (13%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
+FT++ L+ ++ G Q+HA K G + + V AL MY G ++ + ++F+
Sbjct: 477 AFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFE 536
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
++ +RN+++W IITG K G+ + +AL LF +M E P+E+T +AVL
Sbjct: 537 DMEDRNVISWTSIITGFAK-----HGF-----ATQALELFHKMLE-EGVRPNEVTYIAVL 585
Query: 144 PAIWKNGEV-------RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
A G V ++ HG + A C++D + G + A +
Sbjct: 586 SACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYA-------CIVDILGRSGSLSEAIQFIN 638
Query: 197 DTSVDRKNLVSWTTIISGFAMHG---MGKEAVE 226
LV W T + +HG +GK A +
Sbjct: 639 SMPYKADALV-WRTFLGACRVHGNLELGKHAAK 670
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 96/220 (43%), Gaps = 15/220 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D TYS ++ C+ ++GT +H ++ Q +L +Y G + ++ +F
Sbjct: 65 DLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIF 124
Query: 83 DEL-PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
+ R+L++W+ +++ ++ N AL F M Y P+E A
Sbjct: 125 RLMGSSRDLISWSAMVSC----------FANNNMGFRALLTFVDMIENGYY-PNEYCFAA 173
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC-GCIFSASKLFEDTSV 200
A V I G+ K G+ D+ V LID + K G + SA K+FE +
Sbjct: 174 ATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFE--KM 231
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+N V+WT +I+ G EA++ F M G +P+R
Sbjct: 232 PERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDR 271
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 47/158 (29%), Positives = 70/158 (44%), Gaps = 17/158 (10%)
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
N LI Y+KCG A+ +F R +L+SW+ ++S FA + MG A+ F M + G
Sbjct: 105 NSLISLYSKCGQWEKATSIFRLMGSSR-DLISWSAMVSCFANNNMGFRALLTFVDMIENG 163
Query: 236 LKPN--------RSWRIGE---EGLKFFDKMVEECEVLPDIKHYGC-LIDILERA-GRLE 282
PN R+ E G F +++ + D+ GC LID+ + G L
Sbjct: 164 YYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVC-VGCGLIDMFVKGRGDLV 222
Query: 283 QAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITL 320
A +V +P + N V W RL+ Y I L
Sbjct: 223 SAFKVFEKMPER--NAVTWTLMITRLMQFGYAGEAIDL 258
>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
Length = 1084
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 145/261 (55%), Gaps = 26/261 (9%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G +H + G + + V AL +MYV+ ++++ +FD + +++++WN +I
Sbjct: 631 GKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLI----- 685
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
GYSR N +NE+ +LF M +P+ +T+ +LPA+ + + IH Y
Sbjct: 686 -----GGYSRNNFANESFSLFSDMLL--QFKPNTVTMTCILPAVASISSLERGREIHAYA 738
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
+RGF D + SN L+D Y KCG + A LF+ + +KNL+SWT +I+G+ MHG GK
Sbjct: 739 LRRGF-LEDSYTSNALVDMYVKCGALLVARVLFD--RLTKKNLISWTIMIAGYGMHGCGK 795
Query: 223 EAVENFERMQKVGLKPNRS-----------WRIGEEGLKFFDKMVEECEVLPDIKHYGCL 271
+AV FE+M+ G++P+ + + EG KFF+ M +E ++ P +KHY C+
Sbjct: 796 DAVALFEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCI 855
Query: 272 IDILERAGRLEQAEEVASGIP 292
+D+L G L++A E +P
Sbjct: 856 VDLLSHTGNLKEAFEFIESMP 876
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 111/225 (49%), Gaps = 20/225 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ S +++ +L G +H + K+G V AL +Y G ++D+ ++F
Sbjct: 197 DAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVF 256
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + R+ ++WN I+ GY + A+ LF +M + E TE S +T+L+V
Sbjct: 257 DSMHARDAISWNSTIS----------GYFSNGWHDRAVDLFSKMWS-EGTEISSVTVLSV 305
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGF--------NAFDIHVSNCLIDTYAKCGCIFSASKL 194
LPA + G +++HGY K G + D + + L+ Y KCG + SA ++
Sbjct: 306 LPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRV 365
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
F D + N+ W I+ G+A +E++ FE+M ++G+ P+
Sbjct: 366 F-DAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPD 409
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 117/239 (48%), Gaps = 22/239 (9%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
L+++Q+ ++ I +P D S L++ LS G H K+GF +
Sbjct: 395 LLLFEQMHELGI---TP-----DEHALSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCA 446
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
V AL Y + ++ +FD +P ++ ++WN +I+G G+ ++EA+
Sbjct: 447 VCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTS-NGL---------NSEAI 496
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LF RM + E T+L+VLPA ++ +++HGY K G + ++N L+D
Sbjct: 497 ELFVRMWM-QGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIG-ETSLANALLD 554
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
Y+ C S +++F + + +KN+VSWT +I+ + G+ + + M G+KP+
Sbjct: 555 MYSNCSDWHSTNQIFRNMA--QKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPD 611
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 84/167 (50%), Gaps = 12/167 (7%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y+ G L + +FDE+P R + + WT ++ Y++ E ++LFR+M
Sbjct: 140 YLKCGDLGGARMVFDEMPPR--------VADVRVWTSLMSAYAKAGDFQEGVSLFRQMQC 191
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
C + P + VL I G + ++IHG EK G V+N LI Y++CGC+
Sbjct: 192 CGVS-PDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGE-ACAVANALIALYSRCGCM 249
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
A ++F+ S+ ++ +SW + ISG+ +G AV+ F +M G
Sbjct: 250 EDAMQVFD--SMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEG 294
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 97/220 (44%), Gaps = 28/220 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++ T + ++ ++S G ++HA + GF Y + AL DMYV G L + LF
Sbjct: 711 NTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVLF 770
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D L ++NL++W ++I GY +A+ALF +M EP + A+
Sbjct: 771 DRLTKKNLISWTIMIA----------GYGMHGCGKDAVALFEQMRG-SGVEPDTASFSAI 819
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAF--------DIHVSNCLIDTYAKCGCIFSASKL 194
L A +G G+ + FNA + C++D + G + A +
Sbjct: 820 LYACCHSGLT-----AEGW---KFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEF 871
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
E ++ + + W +++ G +H K A + +R+ K+
Sbjct: 872 IESMPIEPDSSI-WVSLLHGCRIHRDVKLAEKVADRVFKL 910
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
L+ Y KCG + A +F++ ++ WT+++S +A G +E V F +MQ G+
Sbjct: 136 LVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVS 195
Query: 238 PN 239
P+
Sbjct: 196 PD 197
>gi|224122888|ref|XP_002318941.1| predicted protein [Populus trichocarpa]
gi|222857317|gb|EEE94864.1| predicted protein [Populus trichocarpa]
Length = 610
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 155/282 (54%), Gaps = 26/282 (9%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
+ + S +R C ++ N G Q+H K GF+S + V ++ DMY G L +++K
Sbjct: 212 LNPHSISIAVRACASIGSQNFGRQIHTAVIKHGFESDLPVTNSILDMYCRCGCLSEANKY 271
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+++ E++L+TWN +I GY R + S E +F +M + E P+ T +
Sbjct: 272 FNDMTEKDLITWNTLIA----------GYERSD-SIEPFFIFSQMES-EGFSPNCFTFTS 319
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
++ A ++ Q +HG +RG + ++ ++N LID YAKCG I + K F + S
Sbjct: 320 LVAACANAAALQCGQQVHGGIFRRGLDG-NLELANALIDMYAKCGNIIDSQKNFSEMSC- 377
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
NLVSWT+++ G+ HG GKEAVE F+ M + G++P++ + ++GL+
Sbjct: 378 -TNLVSWTSMMIGYGTHGYGKEAVELFDEMVRSGIRPDQVVFMAVLHACSHAGLVDQGLR 436
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+ + M+ + + P+ + YGC++D+L R GR+E A ++ +P
Sbjct: 437 YINCMINDYHIKPNQEIYGCVVDLLGRPGRVEDAYQLIRSMP 478
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 115/227 (50%), Gaps = 27/227 (11%)
Query: 19 PPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGF-LK 76
PP ++FT S +++ C + G +H + K F + +YV+ AL DMY S G ++
Sbjct: 108 PP--NAFTISSVLKACKGMKRVFCGRLVHGLAIKRRFMEGFIYVDNALMDMYASCGVGMR 165
Query: 77 DSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT-EPS 135
D+ +F ++ E+N+V+ WT +I GY+ N AL +FR M P
Sbjct: 166 DACVVFHDIKEKNVVS----------WTTLIAGYTHRGNGNRALQIFREMLLDGVALNPH 215
Query: 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
I+I + A G + IH K GF + D+ V+N ++D Y +CGC+ A+K F
Sbjct: 216 SISI--AVRACASIGSQNFGRQIHTAVIKHGFES-DLPVTNSILDMYCRCGCLSEANKYF 272
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVEN---FERMQKVGLKPN 239
D + K+L++W T+I+G+ +++E F +M+ G PN
Sbjct: 273 NDMT--EKDLITWNTLIAGYER----SDSIEPFFIFSQMESEGFSPN 313
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 63/180 (35%), Positives = 88/180 (48%), Gaps = 15/180 (8%)
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
T L Y G + LFDE+PER++V W T +I GY+ N +A ++
Sbjct: 48 TDLLKSYFERGLTSQARNLFDEMPERDVVAW----------TTMISGYTHCNEYTQAWSV 97
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
F M P+ TI +VL A V +L+HG KR F I+V N L+D Y
Sbjct: 98 FVDMVKNGNDPPNAFTISSVLKACKGMKRVFCGRLVHGLAIKRRFMEGFIYVDNALMDMY 157
Query: 183 AKCGC-IFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM--QKVGLKPN 239
A CG + A +F D + KN+VSWTT+I+G+ G G A++ F M V L P+
Sbjct: 158 ASCGVGMRDACVVFHD--IKEKNVVSWTTLIAGYTHRGNGNRALQIFREMLLDGVALNPH 215
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 83/200 (41%), Gaps = 31/200 (15%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
F ++ Q++ SP + FT++ L+ C + G Q+H + G ++
Sbjct: 299 FFIFSQMES---EGFSP-----NCFTFTSLVAACANAAALQCGQQVHGGIFRRGLDGNLE 350
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
+ AL DMY G + DS K F E+ NLV+W ++ GY EA+
Sbjct: 351 LANALIDMYAKCGNIIDSQKNFSEMSCTNLVSWTSMMI----------GYGTHGYGKEAV 400
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVR------NCQLIHGYGEKRGFNAFDIHV 174
LF M P ++ +AVL A G V NC +I+ Y K + +
Sbjct: 401 ELFDEMVR-SGIRPDQVVFMAVLHACSHAGLVDQGLRYINC-MINDYHIKP-----NQEI 453
Query: 175 SNCLIDTYAKCGCIFSASKL 194
C++D + G + A +L
Sbjct: 454 YGCVVDLLGRPGRVEDAYQL 473
>gi|147799543|emb|CAN68467.1| hypothetical protein VITISV_029899 [Vitis vinifera]
Length = 613
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 101/328 (30%), Positives = 171/328 (52%), Gaps = 52/328 (15%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT+ + + C G Q+H + K G S +V + + MY+S G ++D+ +LF
Sbjct: 88 NCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLF 147
Query: 83 ---------DELPER------NLVTWNVIITGLVK---------------------WTGI 106
D + ++ ++V WNV+I G V+ W +
Sbjct: 148 YRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVM 207
Query: 107 IDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRG 166
I GY++ EA+ +FR M E P+ +T+++VLPA+ + G + + +H Y +
Sbjct: 208 IAGYAQSGHFKEAVEVFREMQMAE-VPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNN 266
Query: 167 FNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVE 226
D+ + + LID YAKCG I A ++FE + ++N+V+W+TII+G AMHG K+ ++
Sbjct: 267 IGVDDV-LGSALIDMYAKCGSIEKALQVFE--GLPKRNVVTWSTIIAGLAMHGRAKDTLD 323
Query: 227 NFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDIL 275
+FE M++ G+ P+ IG EG FFD MV + P I+HYGC++D+L
Sbjct: 324 HFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLL 383
Query: 276 ERAGRLEQAEEVASGIPSQITNVVVWRT 303
RAG LE++EE+ +P + + V+W+
Sbjct: 384 GRAGLLEESEELILNMPIKPDD-VIWKA 410
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 109/280 (38%), Gaps = 67/280 (23%)
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
+ K+F + N ++N +I L S N +AL +F M EP+
Sbjct: 41 ARKIFRSMHRPNCFSYNTLIRAL----------SESNDPCDALLVFIEMVEDCSVEPNCF 90
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF-- 195
T +V A + +R + +HG K G ++ + VSN ++ Y CG + A +LF
Sbjct: 91 TFPSVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSN-VVRMYLSCGVMEDAHRLFYR 149
Query: 196 ------------EDTSVD------------------------------RKNLVSWTTIIS 213
+ VD ++++VSW +I+
Sbjct: 150 RVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIA 209
Query: 214 GFAMHGMGKEAVENFERMQKVGLKPN---------RSWRIGEEGL-KFFDKMVEECEVLP 263
G+A G KEAVE F MQ + PN R+G L K+ +
Sbjct: 210 GYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGV 269
Query: 264 DIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
D LID+ + G +E+A +V G+P + NVV W T
Sbjct: 270 DDVLGSALIDMYAKCGSIEKALQVFEGLPKR--NVVTWST 307
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 107/256 (41%), Gaps = 31/256 (12%)
Query: 44 TQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV-- 101
L+AV + +G + +AL DMY G ++ + ++F+ LP+RN+VTW+ II GL
Sbjct: 258 VHLYAVRNNIGVDD--VLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMH 315
Query: 102 -KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHG 160
+ +D + M R+ PS++T + +L A G V +
Sbjct: 316 GRAKDTLDHFEDMERAG--------------VMPSDVTYIGLLSACSHAGLVNEGRWFFD 361
Query: 161 YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG- 219
+ + I C++D + G + + +L + + +++ W ++ MHG
Sbjct: 362 HMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVI-WKALLGACKMHGN 420
Query: 220 --MGKEAVENFERMQK------VGLKPNRSWRIGE-EGLKFFDKMVEECEVLPDIKHYGC 270
MGK E+ + V L N +G EG+ M++E +V
Sbjct: 421 VEMGKRVAEHLMELAPHDSGSYVALS-NIYASLGNWEGVAKVRLMMKEMDVSARWHPEDA 479
Query: 271 LIDILERAGRLEQAEE 286
D+LE A Q +E
Sbjct: 480 CXDMLEEAPEFHQTKE 495
>gi|347954498|gb|AEP33749.1| chloroplast biogenesis 19, partial [Crucihimalaya wallichii]
Length = 491
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 147/292 (50%), Gaps = 37/292 (12%)
Query: 42 LGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG- 99
L LH K+G ++HV V TA+ MY G +K + +FD + + N VTWN +I G
Sbjct: 82 LSNLLHGYACKLGLDRTHVMVGTAIIGMYSKRGHVKKARLVFDYMEDINSVTWNTMIDGY 141
Query: 100 --------------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
L+ WT +I+G+ + EAL FR M P + I
Sbjct: 142 MRSGQVDNAVKMFDKMPERDLISWTAMINGFVKKGFHEEALVWFREMQ-ISGVRPDYVAI 200
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+A L A G + +H Y + F ++ VSN LID Y +CGC+ A ++F+
Sbjct: 201 IAALNACTNLGALSFGLWVHRYVMNQDFKN-NVRVSNSLIDLYCRCGCVEFAREVFD--K 257
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
++++ +VSW ++I GFA +G E++ F +MQ+ G KP+ G EEG
Sbjct: 258 MEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEG 317
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
L++F M + + P I+HYGCL+D+ RAGRLE A +V +P + VV+
Sbjct: 318 LRYFQTMKRDYGISPRIEHYGCLVDLYSRAGRLEDALKVIESMPMKPNEVVI 369
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 89/190 (46%), Gaps = 14/190 (7%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
+ C L + G +H F+++V V+ +L D+Y G ++ + ++FD++ +R +
Sbjct: 204 LNACTNLGALSFGLWVHRYVMNQDFKNNVRVSNSLIDLYCRCGCVEFAREVFDKMEKRTV 263
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
V+WN +I G++ ++E+L FR+M E +P +T L A G
Sbjct: 264 VSWNSVIV----------GFAANGNAHESLVYFRKMQE-EGFKPDAVTFTGALTACSHVG 312
Query: 151 EVRNCQLIHGYGEKRGFN-AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWT 209
V L + KR + + I CL+D Y++ G + A K+ E + + N V
Sbjct: 313 LVEE-GLRYFQTMKRDYGISPRIEHYGCLVDLYSRAGRLEDALKVIESMPM-KPNEVVIG 370
Query: 210 TIISGFAMHG 219
++++ HG
Sbjct: 371 SLLAACRTHG 380
>gi|449452160|ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cucumis sativus]
Length = 532
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 103/339 (30%), Positives = 163/339 (48%), Gaps = 40/339 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++T ++++ ++ +LG +HA K+G + +V +L MY S ++ + ++F
Sbjct: 104 DTYTLPYVLKASARMTNIHLGESIHACTIKLGSAVNEFVGNSLLVMYRSFDNMRSARQVF 163
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
DE+PE + V+W V+I G W +I GY + N E L
Sbjct: 164 DEMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLH 223
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
+FR M E EP E I+ +L A G + IH Y + G + VS LID
Sbjct: 224 MFRLMQLTE-VEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGL-PLTLRVSTGLIDM 281
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG + A LF + S +++ V W +ISG AM G G+ A++ F M+K G+KP+
Sbjct: 282 YAKCGHLDLAKYLFNEMS--QRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDNI 339
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
I +EG++ +++M ++ P +HYGC+ID+L R GR E+AE V
Sbjct: 340 TFIAVLAACSNSGMVDEGIRIWNRMSTVHKIEPKSEHYGCVIDLLSRVGRFEEAEGVIQR 399
Query: 291 IPSQIT---NVVVWRTGFLRLLINSYFFSPITLNSQRLF 326
+P + V WR FL + ++RLF
Sbjct: 400 LPKTASPSEEAVAWR-AFLSACCKHGQTQQAEVAAERLF 437
>gi|357441891|ref|XP_003591223.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480271|gb|AES61474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 606
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 149/279 (53%), Gaps = 26/279 (9%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
F++S + C ++ NLG Q+HA GF+S++ V A+ DMY ++ +LF E
Sbjct: 211 FSFSIAVSACASIGSSNLGKQVHAAVINHGFESNLPVMNAILDMYCRCRCASEAKQLFGE 270
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ +++ +TWN +I G +D Y E+L +F +M + E P+ T +V+
Sbjct: 271 MTQKDTITWNTLIAGF----ETLDSY-------ESLCIFSQMVS-EGFSPNCFTFTSVIA 318
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A + Q +HG RG + ++ +SN LID YAKCG + + K+F + + N
Sbjct: 319 ACANLAILYCGQQLHGGIIHRGLDN-NLELSNALIDMYAKCGNVADSHKIF--SGMRHTN 375
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKFFD 253
LVSWT+++ G+ HG GKEAV+ F M G+KP++ + +EGL++F
Sbjct: 376 LVSWTSMMIGYGAHGHGKEAVDLFNEMVGSGIKPDKIVFMAVLSACSHAGLVDEGLRYFR 435
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
M V PD Y C++D+L RAGR+++A E+ +P
Sbjct: 436 LMTSYYNVAPDRDIYACVVDLLSRAGRVKEAYELIENMP 474
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/305 (24%), Positives = 139/305 (45%), Gaps = 53/305 (17%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQ-SHVYVNTALGDMYVSLGFLKDSSKL 81
++FT S +++ C +L G +H + K+G Q S +YV+ AL DMY + D+++L
Sbjct: 106 NAFTVSAVLKACKSLKALLCGKLVHGLAIKIGTQGSSIYVDNALMDMYATCCDSMDNARL 165
Query: 82 -FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
F+++ +N V+W T +I GY+ + L +FR+M + E E++
Sbjct: 166 VFEDIGTKNAVSW----------TTLITGYTHRRDAFGGLRVFRQM----FMEEGELSPF 211
Query: 141 AVLPAIWKNGEVRNCQL---IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
+ A+ + + L +H GF + ++ V N ++D Y +C C A +LF +
Sbjct: 212 SFSIAVSACASIGSSNLGKQVHAAVINHGFES-NLPVMNAILDMYCRCRCASEAKQLFGE 270
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVE 257
+ +K+ ++W T+I+GF E++ F +M G PN F ++
Sbjct: 271 MT--QKDTITWNTLIAGFETLD-SYESLCIFSQMVSEGFSPN---------CFTFTSVIA 318
Query: 258 ECEVLP----------DIKHYG---------CLIDILERAGRLEQAEEVASGIPSQITNV 298
C L I H G LID+ + G + + ++ SG+ + TN+
Sbjct: 319 ACANLAILYCGQQLHGGIIHRGLDNNLELSNALIDMYAKCGNVADSHKIFSGM--RHTNL 376
Query: 299 VVWRT 303
V W +
Sbjct: 377 VSWTS 381
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 79/156 (50%), Gaps = 14/156 (8%)
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
+ T L Y G +++ LFDE+P R+++ WT +I GY+ N + A
Sbjct: 43 LTTDLIKSYFDKGSFEEAHTLFDEMPHRDVIA----------WTSMITGYTSCNHHSRAW 92
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
+F M + +P+ T+ AVL A + +L+HG K G I+V N L+D
Sbjct: 93 NVFTNMLR-DGVKPNAFTVSAVLKACKSLKALLCGKLVHGLAIKIGTQGSSIYVDNALMD 151
Query: 181 TYAK-CGCIFSASKLFEDTSVDRKNLVSWTTIISGF 215
YA C + +A +FED + KN VSWTT+I+G+
Sbjct: 152 MYATCCDSMDNARLVFED--IGTKNAVSWTTLITGY 185
>gi|449486568|ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 103/339 (30%), Positives = 163/339 (48%), Gaps = 40/339 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++T ++++ ++ +LG +HA K+G + +V +L MY S ++ + ++F
Sbjct: 104 DTYTLPYVLKASARMTNIHLGESIHACTIKLGSAVNEFVGNSLLVMYRSFDNMRSARQVF 163
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
DE+PE + V+W V+I G W +I GY + N E L
Sbjct: 164 DEMPELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLH 223
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
+FR M E EP E I+ +L A G + IH Y + G + VS LID
Sbjct: 224 MFRLMQLTE-VEPDEAIIVTILSACAHMGALDTGIWIHRYLGRLGL-PLTLRVSTGLIDM 281
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG + A LF + S +++ V W +ISG AM G G+ A++ F M+K G+KP+
Sbjct: 282 YAKCGHLDLAKYLFNEMS--QRDNVCWNAMISGMAMDGDGEGAIKLFMEMEKAGIKPDNI 339
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
I +EG++ +++M ++ P +HYGC+ID+L R GR E+AE V
Sbjct: 340 TFIAVWXACSNSGMVDEGIRIWNRMSTVHKIEPKSEHYGCVIDLLSRVGRFEEAEGVIQR 399
Query: 291 IPSQIT---NVVVWRTGFLRLLINSYFFSPITLNSQRLF 326
+P + V WR FL + ++RLF
Sbjct: 400 LPKTASPSEEAVAWR-AFLSACCKHGQTQQAEVAAERLF 437
>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Vitis vinifera]
Length = 889
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 147/281 (52%), Gaps = 25/281 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DS TY L+ L +LG +LH +K+GF S++ V+ L DMY G + DS K+F
Sbjct: 415 DSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVF 474
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + R+++TWN II V N L + RM E P T+L++
Sbjct: 475 ENMKARDIITWNTIIASCV----------HSEDCNLGLRMISRMRT-EGVTPDMATMLSI 523
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LP R + IHG K G + D+ V N LI+ Y+KCG + ++ ++F+ +
Sbjct: 524 LPVCSLLAAKRQGKEIHGCIFKLGLES-DVPVGNVLIEMYSKCGSLRNSFQVFK--LMKT 580
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
K++V+WT +IS M+G GK+AV F M+ G+ P+ + EEGL +
Sbjct: 581 KDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNY 640
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
F +M ++ ++ P I+HY C++D+L R+ L++AE+ +P
Sbjct: 641 FHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMP 681
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 143/314 (45%), Gaps = 32/314 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++T+ +I C L + +H +GF S +Y+ AL DMY L + K+F
Sbjct: 114 DTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVF 173
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+P R++V+WN +I+ GY+ NEAL ++ R P T+ +V
Sbjct: 174 EEMPLRDVVSWNSLIS----------GYNANGYWNEALEIYYRFRNLGVV-PDSYTMSSV 222
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G V +IHG EK G D+ V+N L+ Y K + ++F+ +
Sbjct: 223 LRACGGLGSVEEGDIIHGLIEKIGIKK-DVIVNNGLLSMYCKFNGLIDGRRIFDKMVL-- 279
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR------SWRIGEEGLKFFDKMV 256
++ VSW T+I G++ G+ +E+++ F M KP+ G G F K V
Sbjct: 280 RDAVSWNTMICGYSQVGLYEESIKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYV 338
Query: 257 EECEVLP----DIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINS 312
+ + D LI++ + G L ++EV SG+ + + V W + +IN
Sbjct: 339 HDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCK--DSVSWNS-----MINV 391
Query: 313 YFFSPITLNSQRLF 326
Y + + +LF
Sbjct: 392 YIQNGSFDEAMKLF 405
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 112/237 (47%), Gaps = 17/237 (7%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
+Y++ ++++ + P D T + +++ C L G +H G++ +
Sbjct: 297 LYEESIKLFMEMVNQFKP--DLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTAS 354
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
L +MY G L S ++F + ++ V+WN +I+ Y + +EA+ L
Sbjct: 355 NILINMYAKCGNLLASQEVFSGMKCKDSVSWN----------SMINVYIQNGSFDEAMKL 404
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
F+ M +P +T + +L + G++ + +H K GFN+ +I VSN L+D Y
Sbjct: 405 FKMMKT--DVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNS-NIVVSNTLVDMY 461
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
AKCG + + K+FE+ +++++W TII+ + RM+ G+ P+
Sbjct: 462 AKCGEMGDSLKVFENMKA--RDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPD 516
>gi|357503973|ref|XP_003622275.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355497290|gb|AES78493.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 541
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 159/315 (50%), Gaps = 40/315 (12%)
Query: 23 DSFTYSFLIRTCVTLSYP-NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
++ T+ FL++ C L Y +G +HA K GF + V+V +L ++++ G K++ K+
Sbjct: 127 NNLTFPFLVKGCSRLQYGGTVGEVIHAHVLKFGFLNDVFVGNSLISLFMNFGLSKNARKV 186
Query: 82 FDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEAL 120
FDE+ R++V+WN ++ G ++ W II G + + E+L
Sbjct: 187 FDEMFVRDVVSWNSMVVGYLRNGEVEMALNLFRKMNGRNIITWNSIITGLVQAGHAKESL 246
Query: 121 ALFRRM---AACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
+F M + + +P +ITI +VL A G + + + +H Y K D+ +
Sbjct: 247 EIFHEMQFLSGDDVVKPDKITIASVLSACALLGSIDHGKWVHAYLRKNDIEC-DVVIGTA 305
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
L++ Y KCG + A ++F D + K+ +WT +IS FA+HG GK+A + F M+K G+K
Sbjct: 306 LVNMYGKCGDVQQAIEIFND--MPEKDASAWTAMISVFALHGFGKKAFDCFLEMEKAGVK 363
Query: 238 PNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
PN +G E+G FD M + P I HY C++DIL RA ++A
Sbjct: 364 PNHVTFVGLLSACSHSGLVEQGRCCFDVMKRVYSIEPQIYHYACMVDILSRARLFDEALF 423
Query: 287 VASGIPSQITNVVVW 301
+ +P + +V VW
Sbjct: 424 LIRSMPMK-PDVYVW 437
>gi|356529553|ref|XP_003533355.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 540
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 93/313 (29%), Positives = 157/313 (50%), Gaps = 38/313 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T+ FL++ C G +H K GF VYV +L +Y++ G L ++ K+F
Sbjct: 125 NCLTFPFLLKGCTQWLDGATGQAIHTQVIKFGFLKDVYVANSLISLYMAGGLLSNARKVF 184
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
DE+ ++VTWN ++ G ++ W II G ++ + E+L
Sbjct: 185 DEMLVTDVVTWNSMVIGCLRNGGLDMAMDLFRKMNGRNIITWNSIITGLAQGGSAKESLE 244
Query: 122 LFRRMA--ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
LF M + + +P +ITI +VL A + G + + + +HGY + G D+ + L+
Sbjct: 245 LFHEMQILSDDMVKPDKITIASVLSACAQLGAIDHGKWVHGYLRRNGIEC-DVVIGTALV 303
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+ Y KCG + A ++FE+ + K+ +WT +IS FA+HG+G +A F M+K G+KPN
Sbjct: 304 NMYGKCGDVQKAFEIFEE--MPEKDASAWTVMISVFALHGLGWKAFNCFLEMEKAGVKPN 361
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
+G E+G FD M + P + HY C++DIL RA +++E +
Sbjct: 362 HVTFVGLLSACAHSGLVEQGRWCFDVMKRVYSIEPQVYHYACMVDILSRARLFDESEILI 421
Query: 289 SGIPSQITNVVVW 301
+P + +V VW
Sbjct: 422 RSMPMK-PDVYVW 433
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/230 (20%), Positives = 100/230 (43%), Gaps = 29/230 (12%)
Query: 8 QQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGD 67
++ I S + P D T + ++ C L + G +H + G + V + TAL +
Sbjct: 247 HEMQILSDDMVKP--DKITIASVLSACAQLGAIDHGKWVHGYLRRNGIECDVVIGTALVN 304
Query: 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA 127
MY G ++ + ++F+E+PE++ W V+I+ ++ +A F M
Sbjct: 305 MYGKCGDVQKAFEIFEEMPEKDASAWTVMIS----------VFALHGLGWKAFNCFLEME 354
Query: 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC 187
+P+ +T + +L A +G V + ++ ++ C++D
Sbjct: 355 KAG-VKPNHVTFVGLLSACAHSGLVEQGRWCFDVMKRVYSIEPQVYHYACMVD------- 406
Query: 188 IFSASKLFEDTSV------DRKNLVSWTTIISGFAMHG---MGKEAVENF 228
I S ++LF+++ + + ++ W ++ G MHG +G++ V +
Sbjct: 407 ILSRARLFDESEILIRSMPMKPDVYVWGALLGGCQMHGNVELGEKVVHHL 456
>gi|334185681|ref|NP_189505.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273576|sp|Q9LJJ1.1|PP259_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g28640
gi|9294278|dbj|BAB02180.1| unnamed protein product [Arabidopsis thaliana]
gi|332643948|gb|AEE77469.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 150/281 (53%), Gaps = 26/281 (9%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
T+ FLI C+ + ++G Q+H K G F S +V T + +YV L D+ K+FD
Sbjct: 117 LTFHFLIVACLKACFFSVGKQIHCWVVKNGVFLSDSHVQTGVLRIYVEDKLLLDARKVFD 176
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
E+P+ ++V W+V++ +GY R +E L +FR M + EP E ++ L
Sbjct: 177 EIPQPDVVKWDVLM----------NGYVRCGLGSEGLEVFREMLV-KGLEPDEFSVTTAL 225
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
A + G + + IH + +K+ + D+ V L+D YAKCGCI +A ++F+ + R+
Sbjct: 226 TACAQVGALAQGKWIHEFVKKKSWIESDVFVGTALVDMYAKCGCIETAVEVFKKLT--RR 283
Query: 204 NLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNRSWRIG-----------EEGLKF 251
N+ SW +I G+A +G K+A+ ER+++ G+KP+ +G EEG
Sbjct: 284 NVFSWAALIGGYAAYGYAKKAMTCLERLEREDGIKPDSVVLLGVLAACAHGGFLEEGRSM 343
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+ M E+ P +HY C++D++ RAGRL+ A + +P
Sbjct: 344 LENMEARYEITPKHEHYSCIVDLMCRAGRLDDALNLIEKMP 384
>gi|449463559|ref|XP_004149501.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
gi|449511944|ref|XP_004164096.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Cucumis sativus]
Length = 566
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 98/305 (32%), Positives = 161/305 (52%), Gaps = 31/305 (10%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
FT + ++ ++ N G +H + +K+G+ S V V+ AL DMY +D+ +F+
Sbjct: 176 FTTTSILSILTSMGDINNGRAIHGIVTKMGYSSCVAVSNALIDMYGKCKHTEDALMIFEM 235
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ E++L +WN II+ + + + + L LF +M P ITI AVLP
Sbjct: 236 INEKDLFSWNSIISA----------HEQCDDHDGTLRLFGKMLGSRVL-PDVITITAVLP 284
Query: 145 AIWKNGEVRNCQLIHGY----GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
A + + + IHGY G + N D+ ++N ++D YAKCGC+ +A +F+ +
Sbjct: 285 ACSHLAALMHGREIHGYMIVNGLGKNENGDDVLLNNAIMDMYAKCGCMKNADIIFD--LM 342
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
K++ SW +I G+AMHG G EA++ F RM + +KP+ +G +G
Sbjct: 343 RNKDVASWNIMIMGYAMHGYGTEALDMFHRMCEAQIKPDVVTFVGVLSACSHAGFVHQGR 402
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT--GFLR 307
F +M E V+P I+HY C+ID+L RAG L +A ++A IP + N+++W G R
Sbjct: 403 SFLTRMELEFGVIPTIEHYTCIIDMLGRAGHLGEAYDLAQRIPLE-DNLILWMALLGACR 461
Query: 308 LLINS 312
L N+
Sbjct: 462 LHGNA 466
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 115/213 (53%), Gaps = 25/213 (11%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
F YK+++ + + +P D FT+ ++R C ++H K+G + +V+
Sbjct: 62 FQFYKRMRSVGV-----MP---DKFTFPCVVRACCEFMEVR---KIHGCLFKMGLELNVF 110
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
V +AL + Y+ + +D+ K+F+ELPER++V WN +I+GY+++ N+A+
Sbjct: 111 VGSALVNTYLKVDGTEDAEKVFEELPERDVVLWN----------AMINGYTKIGHLNKAV 160
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
+F+RM E S T ++L + G++ N + IHG K G+++ + VSN LID
Sbjct: 161 VVFKRMGE-EGISLSRFTTTSILSILTSMGDINNGRAIHGIVTKMGYSSC-VAVSNALID 218
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIIS 213
Y KC A +FE ++ K+L SW +IIS
Sbjct: 219 MYGKCKHTEDALMIFE--MINEKDLFSWNSIIS 249
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 86/179 (48%), Gaps = 18/179 (10%)
Query: 63 TALGDMYVSLGFLKDSSKLF-DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALA 121
T+L +MY ++++ +F D ERN+ +N II G V DG+
Sbjct: 14 TSLINMYSRCNQMEEAVLVFRDPYHERNVFAYNAIIAGFVANGLAADGFQ---------- 63
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
++RM + P + T V+ A + EVR IHG K G ++ V + L++T
Sbjct: 64 FYKRMRSVGVM-PDKFTFPCVVRACCEFMEVRK---IHGCLFKMGLE-LNVFVGSALVNT 118
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
Y K A K+FE+ + +++V W +I+G+ G +AV F+RM + G+ +R
Sbjct: 119 YLKVDGTEDAEKVFEE--LPERDVVLWNAMINGYTKIGHLNKAVVVFKRMGEEGISLSR 175
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 69/151 (45%), Gaps = 31/151 (20%)
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
LI+ Y++C + A +F D +R N+ ++ II+GF +G+ + + ++RM+ VG+
Sbjct: 16 LINMYSRCNQMEEAVLVFRDPYHER-NVFAYNAIIAGFVANGLAADGFQFYKRMRSVGVM 74
Query: 238 PNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGC---------------LIDILERAGRLE 282
P++ F + CE + K +GC L++ + E
Sbjct: 75 PDK--------FTFPCVVRACCEFMEVRKIHGCLFKMGLELNVFVGSALVNTYLKVDGTE 126
Query: 283 QAEEVASGIPSQITNVVVWRTGFLRLLINSY 313
AE+V +P + +VV+W +IN Y
Sbjct: 127 DAEKVFEELPER--DVVLWNA-----MINGY 150
>gi|356560343|ref|XP_003548452.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
mitochondrial-like [Glycine max]
Length = 578
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 142/283 (50%), Gaps = 25/283 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+S L+ C TL Y + G Q+H++ + F S V V +AL +MY + D+ LF
Sbjct: 258 DEFTFSSLLSICDTLEYYDFGKQVHSIILRQSFDSDVLVASALINMYAKNENIIDACNLF 317
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + RN+V WN II G N+ + L R M E P E+TI ++
Sbjct: 318 DRMVIRNVVAWNTIIVGC----------GNCGEGNDVMKLLREMLR-EGFFPDELTITSI 366
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ + + H + K F F V+N LI Y+KCG I SA K F T
Sbjct: 367 ISSCGYASAITETMEAHVFVVKSSFQEFS-SVANSLISAYSKCGSITSACKCFRLTR--E 423
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+LV+WT++I+ +A HG+ KEA+E FE+M G+ P+R +G +GL +
Sbjct: 424 PDLVTWTSLINAYAFHGLAKEAIEVFEKMLSCGVIPDRISFLGVFSACSHCGLVTKGLHY 483
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
F+ M +++PD Y CL+D+L R G + +A E +P +
Sbjct: 484 FNLMTSVYKIVPDSGQYTCLVDLLGRRGLINEAFEFLRSMPME 526
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 98/193 (50%), Gaps = 7/193 (3%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G QLHA K GF + + + +Y+ +D KLF ELP RN+V+WN++I G+V
Sbjct: 69 GKQLHAHLIKFGFCHVLSLQNQILGVYLKCMEAEDVEKLFKELPLRNVVSWNILIHGIVG 128
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
I+ YS NR + F+RM E P T ++ K ++ +H +
Sbjct: 129 CGNAIENYS--NR-QLCFSYFKRMLL-ETVVPDGTTFNGLIGVCVKFHDIAMGFQLHCFA 184
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
K G + D V + L+D YAKCG + +A + F V R++LV W +IS +A++ + +
Sbjct: 185 VKFGLD-LDCFVESVLVDLYAKCGLVENAKRAFH--VVPRRDLVMWNVMISCYALNWLPE 241
Query: 223 EAVENFERMQKVG 235
EA F M+ G
Sbjct: 242 EAFGMFNLMRLGG 254
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 103/223 (46%), Gaps = 24/223 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T++ LI CV +G QLH K G +V + L D+Y G ++++ + F
Sbjct: 157 DGTTFNGLIGVCVKFHDIAMGFQLHCFAVKFGLDLDCFVESVLVDLYAKCGLVENAKRAF 216
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA-----ACEYTEPSEI 137
+P R+LV WNV+I+ Y+ EA +F M E+T S +
Sbjct: 217 HVVPRRDLVMWNVMIS----------CYALNWLPEEAFGMFNLMRLGGANGDEFTFSSLL 266
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
+I L + G + +H ++ F++ D+ V++ LI+ YAK I A LF+
Sbjct: 267 SICDTLE-YYDFG-----KQVHSIILRQSFDS-DVLVASALINMYAKNENIIDACNLFDR 319
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+ +N+V+W TII G G G + ++ M + G P+
Sbjct: 320 MVI--RNVVAWNTIIVGCGNCGEGNDVMKLLREMLREGFFPDE 360
>gi|414886077|tpg|DAA62091.1| TPA: methyltransferase small domain protein [Zea mays]
Length = 656
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 152/314 (48%), Gaps = 55/314 (17%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY-------------------- 69
L++ C S G QLH V K GF +H +V L Y
Sbjct: 283 LMKACARYSAVTEGQQLHTVILKNGFDAHAFVQATLVHFYGCCGLIGLAQMTFRLSDKSH 342
Query: 70 -----------VSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNE 118
+ G ++++ +LFD++PER+ V+W+ +I+ GY + RS+
Sbjct: 343 TASWNALLAALLRNGLIREARELFDDMPERDTVSWSTMIS----------GYVQTGRSDM 392
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
AL LF M EP+E+T+ + L AI +G + + IH Y R D ++S+ L
Sbjct: 393 ALKLFYSMLNTS-IEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTD-NLSSGL 450
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
ID YAKCG I A + F + ++ W +I A+HG +++ F ++Q+ +KP
Sbjct: 451 IDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKP 510
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
N IG +G +F+ M E + P IKHYGC++D+L RAG LE+AE++
Sbjct: 511 NSITFIGVLSACCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVDLLGRAGYLEEAEQL 570
Query: 288 ASGIPSQITNVVVW 301
S +P + +VV+W
Sbjct: 571 VSMMPMK-PDVVIW 583
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 137/331 (41%), Gaps = 71/331 (21%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYVSL-GF 74
PL P FL+ + + G QLHA+ +K G S+V+V ++ Y L
Sbjct: 7 PLAP--------FLVASLKRAARLRCGEQLHALAAKSGLLASNVFVRNSVLSSYSRLPSS 58
Query: 75 LKDSSKLFDELPE--RNLVTWNVIITGL-----------------------VKWTGIIDG 109
L + +LFDE P R+ N ++ L V +T ++
Sbjct: 59 LASALQLFDETPPPLRDATARNSVLAALTRAGYLDRAQGLLEEMPRIHRDAVSYTTLVTS 118
Query: 110 YSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNA 169
++R + A+A+FR M + E P+E T+ + A + G +IHG+ +R +
Sbjct: 119 FARAGHAARAVAVFRSMLS-ENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDG 177
Query: 170 FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFE 229
F I +N L+ YA + SA LF+ + +N V+W +++G+ M A E F
Sbjct: 178 FVIVATN-LVHAYAGVLELCSARALFDGMTY--RNTVTWNVMLNGYVKAKMIDMAAEVFW 234
Query: 230 RMQKVGLKPNRSW----------RIGEEGLKFFDKMVEEC-----EVLPDIKHYGCLIDI 274
R+ + + SW + + +K + +MV E EVL L+D+
Sbjct: 235 RIPE---RDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDYEVL--------LVDL 283
Query: 275 LERAGRLEQAEEVASGIPSQITNVVVWRTGF 305
++ R E Q + V+ + GF
Sbjct: 284 MKACARYSAVTE------GQQLHTVILKNGF 308
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 129/346 (37%), Gaps = 65/346 (18%)
Query: 40 PNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG 99
P +H + V V T L Y + L + LFD + RN VTWNV++ G
Sbjct: 160 PATVGMIHGFALQRALDGFVIVATNLVHAYAGVLELCSARALFDGMTYRNTVTWNVMLNG 219
Query: 100 LVK---------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
VK W +IDGY + ++A+ + +M E+
Sbjct: 220 YVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDYEVL 279
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD------IHVSNC--------------- 177
++ ++ A + V Q +H K GF+A +H C
Sbjct: 280 LVDLMKACARYSAVTEGQQLHTVILKNGFDAHAFVQATLVHFYGCCGLIGLAQMTFRLSD 339
Query: 178 ---------LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENF 228
L+ + G I A +LF+D + ++ VSW+T+ISG+ G A++ F
Sbjct: 340 KSHTASWNALLAALLRNGLIREARELFDD--MPERDTVSWSTMISGYVQTGRSDMALKLF 397
Query: 229 ERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILER 277
M ++PN ++G D ++ L D G LID+ +
Sbjct: 398 YSMLNTSIEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTDNLSSG-LIDMYAK 456
Query: 278 AGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQ 323
G + A + + + + ++V W L I+ Y + L SQ
Sbjct: 457 CGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQ 502
>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Vitis vinifera]
Length = 631
Score = 154 bits (389), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 101/328 (30%), Positives = 171/328 (52%), Gaps = 52/328 (15%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT+ + + C G Q+H + K G S +V + + MY+S G ++D+ +LF
Sbjct: 111 NCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLF 170
Query: 83 ---------DELPER------NLVTWNVIITGLVK---------------------WTGI 106
D + ++ ++V WNV+I G V+ W +
Sbjct: 171 YRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVM 230
Query: 107 IDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRG 166
I GY++ EA+ +FR M E P+ +T+++VLPA+ + G + + +H Y +
Sbjct: 231 IAGYAQSGHFKEAVEVFREMQMAE-VPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNN 289
Query: 167 FNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVE 226
D+ + + LID YAKCG I A ++FE + ++N+V+W+TII+G AMHG K+ ++
Sbjct: 290 IGVDDV-LGSALIDMYAKCGSIEKALQVFE--GLPKRNVVTWSTIIAGLAMHGRAKDTLD 346
Query: 227 NFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDIL 275
+FE M++ G+ P+ IG EG FFD MV + P I+HYGC++D+L
Sbjct: 347 HFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLL 406
Query: 276 ERAGRLEQAEEVASGIPSQITNVVVWRT 303
RAG LE++EE+ +P + + V+W+
Sbjct: 407 GRAGLLEESEELILNMPIKPDD-VIWKA 433
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 109/280 (38%), Gaps = 67/280 (23%)
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
+ K+F + N ++N +I L S N +AL +F M EP+
Sbjct: 64 ARKIFRSMHRPNCFSYNTLIRAL----------SESNDPCDALLVFIEMVEDCSVEPNCF 113
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF-- 195
T +V A + +R + +HG K G ++ + VSN ++ Y CG + A +LF
Sbjct: 114 TFPSVFKACGRAERLREGRQVHGLAVKFGLDSDEFVVSN-VVRMYLSCGVMEDAHRLFYR 172
Query: 196 ------------EDTSVD------------------------------RKNLVSWTTIIS 213
+ VD ++++VSW +I+
Sbjct: 173 RVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIA 232
Query: 214 GFAMHGMGKEAVENFERMQKVGLKPN---------RSWRIGEEGL-KFFDKMVEECEVLP 263
G+A G KEAVE F MQ + PN R+G L K+ +
Sbjct: 233 GYAQSGHFKEAVEVFREMQMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGV 292
Query: 264 DIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
D LID+ + G +E+A +V G+P + NVV W T
Sbjct: 293 DDVLGSALIDMYAKCGSIEKALQVFEGLPKR--NVVTWST 330
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 17/188 (9%)
Query: 44 TQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKW 103
L+AV + +G + +AL DMY G ++ + ++F+ LP+RN+VTW+ II GL
Sbjct: 281 VHLYAVRNNIGVDD--VLGSALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGL--- 335
Query: 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGE 163
+ R+ + L F M PS++T + +L A G V + +
Sbjct: 336 -------AMHGRAKDTLDHFEDMERAGVM-PSDVTYIGLLSACSHAGLVNEGRWFFDHMV 387
Query: 164 KRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG---M 220
+ I C++D + G + + +L + + +++ W ++ MHG M
Sbjct: 388 RVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVI-WKALLGACKMHGNVEM 446
Query: 221 GKEAVENF 228
GK E+
Sbjct: 447 GKRVAEHL 454
>gi|125528144|gb|EAY76258.1| hypothetical protein OsI_04193 [Oryza sativa Indica Group]
Length = 565
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 177/338 (52%), Gaps = 38/338 (11%)
Query: 2 LVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYV 61
LVY+++ + + SPLP +SFT +F ++ C + G QLH+ + G + YV
Sbjct: 113 LVYRRM----LRAGSPLP---NSFTLAFALKACSVVPALGEGRQLHSQAFRRGLEPSPYV 165
Query: 62 NTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALA 121
T L ++Y + + +FD + V L W+ +I GYSR+ NEAL
Sbjct: 166 QTGLLNLYAKCEEVALARTVFDGM---------VGDKNLAAWSAMIGGYSRVGMVNEALG 216
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LFR M A + P E+T+++V+ A K G + + +H + +++G D+ +S LID
Sbjct: 217 LFREMQAAD-VNPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGIT-VDLELSTALIDM 274
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG I A +F+ ++ ++ +W+ +I G A+HG+ + A++ F RM ++ ++PN
Sbjct: 275 YAKCGLIERAKGVFD--AMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNV 332
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
IG EG +++ M +E + P +++YGC++D+ R+ L++A +G
Sbjct: 333 TFIGVLSACAHSGLVNEGRRYWSTM-QELGIKPSMENYGCMVDLFCRSSLLDEAYSFVTG 391
Query: 291 --IPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLF 326
IP N V+WRT L NS F + S++L
Sbjct: 392 MAIP---PNSVIWRT-LLVASKNSNRFDIVQSASKKLL 425
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 114/264 (43%), Gaps = 33/264 (12%)
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
+ LFD++PE +N +I L G+ + + + ++RRM P+
Sbjct: 77 ARNLFDQIPEPTAFCYNSLIRALSSAAGVAP-------AADTVLVYRRMLRAGSPLPNSF 129
Query: 138 TI------LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191
T+ +V+PA+ GE R +H +RG +V L++ YAKC + A
Sbjct: 130 TLAFALKACSVVPAL---GEGRQ---LHSQAFRRGLEP-SPYVQTGLLNLYAKCEEVALA 182
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---------SW 242
+F D V KNL +W+ +I G++ GM EA+ F MQ + P+
Sbjct: 183 RTVF-DGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACA 241
Query: 243 RIGEEGL-KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ G L ++ ++ + D++ LID+ + G +E+A+ V + + T W
Sbjct: 242 KAGALDLGRWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTK--AW 299
Query: 302 RTGFLRLLINSYFFSPITLNSQRL 325
+ L I+ + L S+ L
Sbjct: 300 SAMIVGLAIHGLVEVALKLFSRML 323
>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 939
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 154/292 (52%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FTY +++ C + N G ++H K G +V AL DMY G ++++ K+
Sbjct: 478 DQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIH 537
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + ++ +V+WN II G++ + S +A + F M +P T V
Sbjct: 538 DRIEQQTMVSWNAIIA----------GFTLLKHSEDAHSFFYEMLKMS-VKPDNFTYAIV 586
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A V + IHG K ++ D+++++ L+D Y+KCG + ++ +FE
Sbjct: 587 LDACANLASVGLGKQIHGQIIKLELHS-DVYITSTLVDMYSKCGNMQDSALVFEKAP--N 643
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
K+ V+W +I G+A HG+G+EA+ FERMQ ++PN + + ++GL +
Sbjct: 644 KDFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHY 703
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ M+ E + P I+HY C+IDI+ R+GR+ +A ++ +P + + V+WRT
Sbjct: 704 FNAMLTEYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFE-ADAVIWRT 754
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 126/292 (43%), Gaps = 26/292 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
F+ + S C ++ G QLH++ K +S++ V ++ DMY L ++ +
Sbjct: 376 FNEISLSGAFSACASIKGDLDGRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCM 435
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FDE+ R+ V+WN +I + + E L LF M EP + T +
Sbjct: 436 FDEMERRDAVSWNAVIA----------AHEQNGNEEETLNLFASMLRLR-MEPDQFTYGS 484
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL A + + IH K G D V LID Y KCG I A K+ + ++
Sbjct: 485 VLKACSSQQALNSGMEIHNRIIKSGL-GLDSFVGGALIDMYCKCGMIEEAKKIHD--RIE 541
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---------SWRIGEEGL-KF 251
++ +VSW II+GF + ++A F M K+ +KP+ + GL K
Sbjct: 542 QQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQ 601
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ + E+ D+ L+D+ + G ++ + V P++ + V W
Sbjct: 602 IHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNK--DFVTWNA 651
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 14/219 (6%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD T++ +++ C L LG Q+H + ++GF V +AL DMY L DS K+
Sbjct: 174 FDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLDMYAKCKRLDDSLKI 233
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F E+P +N V W+ II G V+ I G L LF+ M S+ +
Sbjct: 234 FSEIPVKNWVCWSAIIAGCVQNDEHILG----------LELFKEMQKVGIG-VSQSIYAS 282
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
V + ++ +H + K F + DI V +D YAKCG + A ++F S+
Sbjct: 283 VFRSCAGLSALKVGTQLHAHALKCDFGS-DITVGTATLDMYAKCGSLADAQRIF--NSLP 339
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+ +L + II G + G EA++ F+ + K GL N
Sbjct: 340 KHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNE 378
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 96/198 (48%), Gaps = 14/198 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FTY+ ++ C L+ LG Q+H K+ S VY+ + L DMY G ++DS+ +F
Sbjct: 579 DNFTYAIVLDACANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVF 638
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++ P ++ VTWN +I GY++ EAL F RM E P+ T +++
Sbjct: 639 EKAPNKDFVTWNAMIC----------GYAQHGLGEEALGYFERMQL-ENVRPNHATFVSI 687
Query: 143 LPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G + + + + G H S C+ID + G I A KL ++ +
Sbjct: 688 LRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYS-CMIDIIGRSGRISEALKLIQEMPFE 746
Query: 202 RKNLVSWTTIISGFAMHG 219
+ V W T++S +HG
Sbjct: 747 -ADAVIWRTLLSICKIHG 763
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 81/336 (24%), Positives = 150/336 (44%), Gaps = 47/336 (13%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
F LQQ + + LP +F++ +I+ C + G Q HA GF VY
Sbjct: 26 FCTISTLQQ----NQTKLPTKIRTFSH--IIQECSDYNSLKPGKQAHARMIVSGFIPDVY 79
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG--------------------- 99
++ L MY+ L + K+F+++ +R+++++N +I+G
Sbjct: 80 ISNCLMKMYLRCSHLNYAYKVFEKMSQRDVISYNTMISGYADAGEMNLANEFFYDTPKRD 139
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA--IWKNGEVRNCQL 157
+V W ++ G+ + +++ +F M E + T VL A + ++G +
Sbjct: 140 VVSWNSMLSGFLQNGECRKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLG--IQ 197
Query: 158 IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAM 217
+HG + GF D+ + L+D YAKC + + K+F + V KN V W+ II+G
Sbjct: 198 VHGLIVRMGFYK-DVVTGSALLDMYAKCKRLDDSLKIFSEIPV--KNWVCWSAIIAGCVQ 254
Query: 218 HGMGKEAVENFERMQKVGLKPNRS-----WR--IGEEGLKFFDKM---VEECEVLPDIKH 267
+ +E F+ MQKVG+ ++S +R G LK ++ +C+ DI
Sbjct: 255 NDEHILGLELFKEMQKVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITV 314
Query: 268 YGCLIDILERAGRLEQAEEVASGIPS---QITNVVV 300
+D+ + G L A+ + + +P Q N ++
Sbjct: 315 GTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAII 350
>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 609
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 162/311 (52%), Gaps = 35/311 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ ++++F + C + G Q+ K+G +++++V AL MYV+L F+ D+ K+F
Sbjct: 101 NQYSFAFAFKGCGSGVGVLEGEQVRVHAIKLGLENNLFVTNALIGMYVNLDFVVDARKVF 160
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
D P R++ +WN++++G +V WT +I G ++ EAL
Sbjct: 161 DWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEMPEKDVVSWTTMISGCLQVGYFMEALD 220
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
+F M A + P+E T+ + L A + + +H Y +K + ++ LID
Sbjct: 221 IFHNMLA-KGMSPNEYTLASSLAACANLVALDQGRWMHVYIKKNNIQMNERLLAG-LIDM 278
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG + ASKLF ++ + W +I GFA+HG KEA+E FE+M+ + PN+
Sbjct: 279 YAKCGELEFASKLFNSNPRLKRKVWPWNAMIGGFAVHGKSKEAIEVFEQMKIEKVSPNKV 338
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+ EEG +F+ M V P+++HYGCL+D+L RAGRL++AEE+ S
Sbjct: 339 TFVALLNACSHGNRVEEGRYYFESMASHYRVKPELEHYGCLVDLLGRAGRLKEAEEIISS 398
Query: 291 IPSQITNVVVW 301
+ +V +W
Sbjct: 399 M-HLTPDVAIW 408
>gi|15228119|ref|NP_181269.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216847|sp|Q9ZUT4.1|PP192_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g37320
gi|4056486|gb|AAC98052.1| hypothetical protein [Arabidopsis thaliana]
gi|37202040|gb|AAQ89635.1| At2g37320 [Arabidopsis thaliana]
gi|51969760|dbj|BAD43572.1| hypothetical protein [Arabidopsis thaliana]
gi|330254289|gb|AEC09383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 500
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 173/329 (52%), Gaps = 28/329 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD++ S +R+C G+ H + K GF S VY+ ++L +Y G ++++ K+
Sbjct: 118 FDAYGLSSAVRSCGLNRDFRTGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVENAYKV 177
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+E+PERN+V+ WT +I G+++ R + L L+ +M ++P++ T A
Sbjct: 178 FEEMPERNVVS----------WTAMISGFAQEWRVDICLKLYSKMRK-STSDPNDYTFTA 226
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+L A +G + + +H G ++ +H+SN LI Y KCG + A ++F+ S
Sbjct: 227 LLSACTGSGALGQGRSVHCQTLHMGLKSY-LHISNSLISMYCKCGDLKDAFRIFDQFS-- 283
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQ-KVGLKPNRSWRIG-----------EEGL 249
K++VSW ++I+G+A HG+ +A+E FE M K G KP+ +G +EG
Sbjct: 284 NKDVVSWNSMIAGYAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLSSCRHAGLVKEGR 343
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLL 309
KFF+ M E + P++ HY CL+D+L R G L++A E+ +P + N V+W +
Sbjct: 344 KFFNLMAEH-GLKPELNHYSCLVDLLGRFGLLQEALELIENMPMK-PNSVIWGSLLFSCR 401
Query: 310 INSYFFSPITLNSQRLFFFPAALYALTQI 338
++ ++ I +RL P Q+
Sbjct: 402 VHGDVWTGIRAAEERLMLEPDCAATHVQL 430
>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 144/273 (52%), Gaps = 24/273 (8%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T ++ C LG + + G S++ + AL DMY G L + LF+ +
Sbjct: 266 TMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGI 325
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
E+++++WNV+I GYS MN EALALFR+M EP+++T +++LPA
Sbjct: 326 CEKDIISWNVMI----------GGYSHMNSYKEALALFRKMQQSN-VEPNDVTFVSILPA 374
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
G + + IH Y +K+ + + LID YAKCG I +A ++F + K+L
Sbjct: 375 CAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVF--AGMKPKSL 432
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDK 254
SW +ISG AMHG A+E F +M+ G +P+ +G E G + F
Sbjct: 433 GSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSS 492
Query: 255 MVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
MVE+ ++ P ++HYGC+ID+L RAG ++AE +
Sbjct: 493 MVEDYDISPKLQHYGCMIDLLGRAGLFDEAEAL 525
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 147/304 (48%), Gaps = 42/304 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S+T+ FL+++C + G Q+H K+G +S +V+T+L +MY G L + +F
Sbjct: 131 NSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVF 190
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
+ R+ V++ +ITG V W +I GY++ R EALA
Sbjct: 191 SKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALA 250
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
F+ M P+E T++ VL A ++G + + + E G + ++ + N LID
Sbjct: 251 FFQEMKRAN-VAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGS-NLRLVNALIDM 308
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR- 240
Y+KCG + A LFE + K+++SW +I G++ KEA+ F +MQ+ ++PN
Sbjct: 309 YSKCGDLDKARDLFE--GICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDV 366
Query: 241 -------------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ +G+ + DK + L + + LID+ + G +E A++V
Sbjct: 367 TFVSILPACAYLGALDLGKWIHAYIDK---KFLGLTNTSLWTSLIDMYAKCGNIEAAKQV 423
Query: 288 ASGI 291
+G+
Sbjct: 424 FAGM 427
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 132/315 (41%), Gaps = 62/315 (19%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV--SLGFLKDSSKLFDELPE 87
L+ TC S+ NL Q+H+ K G + + + L + G L + LF+ + +
Sbjct: 38 LLSTCK--SFQNL-KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQ 94
Query: 88 RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIW 147
N WN +I G S + A+ + RM C EP+ T +L +
Sbjct: 95 PNQFIWNTMIR----------GNSLSSSPVGAIDFYVRMLLCG-VEPNSYTFPFLLKSCA 143
Query: 148 KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC---------------------- 185
K G + + IHG+ K G + D V LI+ YA+
Sbjct: 144 KVGATQEGKQIHGHVLKLGLES-DPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFT 202
Query: 186 ---------GCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
GC+ A +LFE+ V ++ VSW +I+G+A G +EA+ F+ M++ +
Sbjct: 203 ALITGYTLRGCLDDARRLFEEIPV--RDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANV 260
Query: 237 KPNRSWRI------GEEGL----KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
PN S + + G + +E+ + +++ LID+ + G L++A +
Sbjct: 261 APNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARD 320
Query: 287 VASGIPSQITNVVVW 301
+ GI + +++ W
Sbjct: 321 LFEGICEK--DIISW 333
>gi|347954500|gb|AEP33750.1| chloroplast biogenesis 19, partial [Lepidium sativum]
Length = 494
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 147/292 (50%), Gaps = 37/292 (12%)
Query: 42 LGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG- 99
L LH K+G +SHV V TA+ MY G ++ + +FD + ++N VTWN +I G
Sbjct: 88 LSDLLHGYACKLGLDRSHVMVGTAILGMYSKRGHVRKARLVFDYMEDKNSVTWNTMIDGY 147
Query: 100 --------------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
L+ WT +I G+ + EALA FR M P + I
Sbjct: 148 MRNGQVDNAVKVFDEMPERDLISWTAMITGFVKKGFHEEALAWFREMQ-ISGVNPDYVAI 206
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+A L A G + H Y + F ++ VSN LID Y +CGC+ A ++F+ +
Sbjct: 207 IAALAACTNLGALSFGLWAHRYVVSQDFRN-NVRVSNSLIDLYCRCGCVEFARQVFD--T 263
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
++++ +VSW ++I GFA +G E++ F +MQ+ G KP+ G EEG
Sbjct: 264 MEKRTVVSWNSVIVGFAANGNANESLVYFRKMQEEGFKPDAVTFTGALTACSHVGLVEEG 323
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
++F M + + P I+H+GCL+D+ RAGRLE A +V +P + VV+
Sbjct: 324 FQYFQMMKTDYRISPRIEHFGCLVDLYSRAGRLEDAIKVVESMPMKPNEVVI 375
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 87/200 (43%), Gaps = 34/200 (17%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
+ C L + G H F+++V V+ +L D+Y G ++ + ++FD + +R +
Sbjct: 210 LAACTNLGALSFGLWAHRYVVSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDTMEKRTV 269
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
V+WN +I G++ +NE+L FR+M E +P +T L A G
Sbjct: 270 VSWNSVIV----------GFAANGNANESLVYFRKMQE-EGFKPDAVTFTGALTACSHVG 318
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSN-----------CLIDTYAKCGCIFSASKLFEDTS 199
V + GF F + ++ CL+D Y++ G + A K+ E
Sbjct: 319 LV-----------EEGFQYFQMMKTDYRISPRIEHFGCLVDLYSRAGRLEDAIKVVESMP 367
Query: 200 VDRKNLVSWTTIISGFAMHG 219
+ + N V ++++ HG
Sbjct: 368 M-KPNEVVIGSLLAACRNHG 386
>gi|222624265|gb|EEE58397.1| hypothetical protein OsJ_09562 [Oryza sativa Japonica Group]
Length = 523
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 103/345 (29%), Positives = 165/345 (47%), Gaps = 68/345 (19%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS--- 79
D T+ F++R C + + G Q+HA K G +S +V AL M+ S G L ++
Sbjct: 81 DKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALF 140
Query: 80 ----------------------------KLFDELPERNLVTWNVIITG------------ 99
LFDE P ++LV+WNV+IT
Sbjct: 141 DGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARE 200
Query: 100 ---------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
+V W +I GY R AL LF +M +P +T+L++L A +G
Sbjct: 201 LFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMG-EKPDIVTMLSLLSACADSG 259
Query: 151 EVRNCQLIHG-YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWT 209
++ Q +H + N F + + N LID YAKCG + SA ++F S+ K++ +W
Sbjct: 260 DLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVF--WSMRDKDVSTWN 317
Query: 210 TIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEE 258
+I+ G A+HG E+++ FE+M K ++P+ + ++G +FF+ M +
Sbjct: 318 SIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHK 377
Query: 259 CEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
V P+IKHYGC++D+L RAG L++A E + + N V+WRT
Sbjct: 378 YRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCE-PNSVIWRT 421
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 18/201 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHA----VFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
D T L+ C ++G +LH+ +FS+ GF V + AL DMY G +K +
Sbjct: 244 DIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFP--VVLGNALIDMYAKCGSMKSA 301
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
++F + ++++ TWN I+ GL ++ E++ +F +M + P EIT
Sbjct: 302 HEVFWSMRDKDVSTWNSIVGGLALHGHVL----------ESIDMFEKMLKGK-VRPDEIT 350
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+AVL A G V + + + +I C++D + G + A + F DT
Sbjct: 351 FVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFE-FIDT 409
Query: 199 SVDRKNLVSWTTIISGFAMHG 219
N V W T++S +HG
Sbjct: 410 MKCEPNSVIWRTLLSACRVHG 430
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 106/275 (38%), Gaps = 62/275 (22%)
Query: 55 FQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMN 114
F S V V A+ Y+ +FD++P + +N +I G
Sbjct: 18 FASAVAVRGAIAHAYL----------VFDQIPRPDRFMYNTLIRGAAHTAA--------- 58
Query: 115 RSNEALALFRRM---AACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD 171
+A++L+ RM P ++T VL A G +H + K G + D
Sbjct: 59 -PRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCES-D 116
Query: 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
V N LI +A CG + A+ LF+ + R++ V+W+ +I+G A G A + F
Sbjct: 117 AFVKNALIGMHASCGNLGIAAALFDGRA--REDAVAWSAMITGCARRGDIGAARDLF--- 171
Query: 232 QKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
+EC V D+ + +I + G + A E+ +
Sbjct: 172 -------------------------DECPV-KDLVSWNVMITAYAKRGDMALARELFDQV 205
Query: 292 PSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLF 326
P + +VV W ++I+ Y L++ LF
Sbjct: 206 PER--DVVSW-----NVMISGYVRCGSHLHALELF 233
>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 684
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 164/322 (50%), Gaps = 42/322 (13%)
Query: 17 PLPPLFDSFTYSFLIRTC---VTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG 73
P+ + D +T++F+I +C ++L Y G +H + K GF+S++YV ++ +M
Sbjct: 171 PMQVVPDEYTFTFVITSCSHQISLIY---GEIVHGMVVKSGFESNLYVGNSVINMCSVFA 227
Query: 74 FLKDSSKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSR 112
++D+ K+F+++ ER++ +W ++ G K W +I G+
Sbjct: 228 RMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLG 287
Query: 113 MNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDI 172
R EAL F M + P+E ++ VL A G + IH Y +K G
Sbjct: 288 CGRYPEALTFFCNMLCDDRVNPNEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSS- 346
Query: 173 HVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQ 232
++S LID YAKCG I AS++F + +++++S+T++ISG + HG+GK+A+ F +M
Sbjct: 347 NISTALIDMYAKCGRIDCASRVF--NGICKRDVLSFTSMISGLSYHGLGKDALRVFYQML 404
Query: 233 KVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRL 281
+ PN +G EEG M + P I+HYGC ID+L RAG L
Sbjct: 405 DENVMPNEITILGVLNGCSHSGLVEEGSSILANMESLWGIAPKIEHYGCYIDLLGRAGYL 464
Query: 282 EQAEEVASGIPSQITNVVVWRT 303
E+A EV +P + ++V+WR
Sbjct: 465 ERALEVVKTMPME-PDIVIWRA 485
>gi|449468660|ref|XP_004152039.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 697
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 100/355 (28%), Positives = 162/355 (45%), Gaps = 66/355 (18%)
Query: 9 QIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDM 68
Q Y+H L S+T+S L++ C + LG +H K GF+SH++V TAL D
Sbjct: 220 QCYVHMLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDF 279
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK---------------------WTGII 107
Y L L ++ K+FDE+ ER+ W +++ L + W +I
Sbjct: 280 YSKLEILSEARKVFDEMCERDAFAWTAMVSALARVGDMDSARKLFEEMPERNTATWNTMI 339
Query: 108 DGYSRMNRSNEALALFRRM-----------------------AACEYTE-------PSEI 137
DGY+R+ A LF +M A Y+E P E+
Sbjct: 340 DGYARLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEV 399
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
T+ V A G + + IH Y +G N D+++ + L+D YAKCG + + +F
Sbjct: 400 TMSTVASACAHIGALELGKEIHHYVMSQGLN-LDVYIGSALVDMYAKCGSLDLSLLIF-- 456
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------E 246
+ KNL W +I G A+HG ++A+ F M++ + PN I +
Sbjct: 457 FKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVD 516
Query: 247 EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
EG F M + ++ PDI+HYGC++D+L ++G L +A E+ + + N ++W
Sbjct: 517 EGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFE-PNSIIW 570
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 25/214 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T S + C + LG ++H G VY+ +AL DMY G L S +F
Sbjct: 397 DEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIF 456
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+L ++NL WN +I GL + GY+ +AL +F M E P+ +T +++
Sbjct: 457 FKLTDKNLYCWNAVIEGLA-----VHGYAE-----KALRMFAIMER-EKIMPNGVTFISI 505
Query: 143 LPA-----IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
L A + G R + Y + DI C++D +K G + A +L +
Sbjct: 506 LSACTHAGLVDEGRSRFLSMTRDYDIRP-----DIRHYGCMVDMLSKSGYLNEALELIKS 560
Query: 198 TSVDRKNLVSWTTIISGFAMHG---MGKEAVENF 228
+ +++ W +++G +HG + ++AVE
Sbjct: 561 MEFEPNSII-WGALLNGCKLHGNCEIAEDAVEQL 593
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/291 (21%), Positives = 118/291 (40%), Gaps = 57/291 (19%)
Query: 19 PPLFDSFTYSFL--IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76
PP SF + L I+ C T++ +LH + + + +++ + L ++S F
Sbjct: 129 PPSCPSFKQTLLNRIKNCSTIN------ELHGLCASM-IKTNAIQDCFLVHQFISASFAL 181
Query: 77 DSSKL----FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT 132
+S F ++ N+ +N +I G V GY AL + M
Sbjct: 182 NSVHYPVFAFTQMENPNVFVYNAMIKGFVYC-----GYPF-----RALQCYVHMLEESNV 231
Query: 133 EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSAS 192
P+ T +++ A V Q++H + K+GF + + V L+D Y+K + A
Sbjct: 232 LPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFES-HLFVQTALVDFYSKLEILSEAR 290
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFF 252
K+F++ ++ +WT ++S A G A + FE M P R
Sbjct: 291 KVFDEMC--ERDAFAWTAMVSALARVGDMDSARKLFEEM------PER------------ 330
Query: 253 DKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ + +ID R G +E AE + + +P++ +++ W T
Sbjct: 331 -----------NTATWNTMIDGYARLGNVESAELLFNQMPTK--DIISWTT 368
>gi|414886078|tpg|DAA62092.1| TPA: hypothetical protein ZEAMMB73_488923 [Zea mays]
Length = 714
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 152/314 (48%), Gaps = 55/314 (17%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY-------------------- 69
L++ C S G QLH V K GF +H +V L Y
Sbjct: 283 LMKACARYSAVTEGQQLHTVILKNGFDAHAFVQATLVHFYGCCGLIGLAQMTFRLSDKSH 342
Query: 70 -----------VSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNE 118
+ G ++++ +LFD++PER+ V+W+ +I+ GY + RS+
Sbjct: 343 TASWNALLAALLRNGLIREARELFDDMPERDTVSWSTMIS----------GYVQTGRSDM 392
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
AL LF M EP+E+T+ + L AI +G + + IH Y R D ++S+ L
Sbjct: 393 ALKLFYSMLNTS-IEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTD-NLSSGL 450
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
ID YAKCG I A + F + ++ W +I A+HG +++ F ++Q+ +KP
Sbjct: 451 IDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKP 510
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
N IG +G +F+ M E + P IKHYGC++D+L RAG LE+AE++
Sbjct: 511 NSITFIGVLSACCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVDLLGRAGYLEEAEQL 570
Query: 288 ASGIPSQITNVVVW 301
S +P + +VV+W
Sbjct: 571 VSMMPMK-PDVVIW 583
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 137/331 (41%), Gaps = 71/331 (21%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYVSL-GF 74
PL P FL+ + + G QLHA+ +K G S+V+V ++ Y L
Sbjct: 7 PLAP--------FLVASLKRAARLRCGEQLHALAAKSGLLASNVFVRNSVLSSYSRLPSS 58
Query: 75 LKDSSKLFDELPE--RNLVTWNVIITGL-----------------------VKWTGIIDG 109
L + +LFDE P R+ N ++ L V +T ++
Sbjct: 59 LASALQLFDETPPPLRDATARNSVLAALTRAGYLDRAQGLLEEMPRIHRDAVSYTTLVTS 118
Query: 110 YSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNA 169
++R + A+A+FR M + E P+E T+ + A + G +IHG+ +R +
Sbjct: 119 FARAGHAARAVAVFRSMLS-ENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDG 177
Query: 170 FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFE 229
F I +N L+ YA + SA LF+ + +N V+W +++G+ M A E F
Sbjct: 178 FVIVATN-LVHAYAGVLELCSARALFDGMTY--RNTVTWNVMLNGYVKAKMIDMAAEVFW 234
Query: 230 RMQKVGLKPNRSW----------RIGEEGLKFFDKMVEEC-----EVLPDIKHYGCLIDI 274
R+ + + SW + + +K + +MV E EVL L+D+
Sbjct: 235 RIPE---RDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDYEVL--------LVDL 283
Query: 275 LERAGRLEQAEEVASGIPSQITNVVVWRTGF 305
++ R E Q + V+ + GF
Sbjct: 284 MKACARYSAVTE------GQQLHTVILKNGF 308
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 129/346 (37%), Gaps = 65/346 (18%)
Query: 40 PNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG 99
P +H + V V T L Y + L + LFD + RN VTWNV++ G
Sbjct: 160 PATVGMIHGFALQRALDGFVIVATNLVHAYAGVLELCSARALFDGMTYRNTVTWNVMLNG 219
Query: 100 LVK---------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
VK W +IDGY + ++A+ + +M E+
Sbjct: 220 YVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDYEVL 279
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD------IHVSNC--------------- 177
++ ++ A + V Q +H K GF+A +H C
Sbjct: 280 LVDLMKACARYSAVTEGQQLHTVILKNGFDAHAFVQATLVHFYGCCGLIGLAQMTFRLSD 339
Query: 178 ---------LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENF 228
L+ + G I A +LF+D + ++ VSW+T+ISG+ G A++ F
Sbjct: 340 KSHTASWNALLAALLRNGLIREARELFDD--MPERDTVSWSTMISGYVQTGRSDMALKLF 397
Query: 229 ERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILER 277
M ++PN ++G D ++ L D G LID+ +
Sbjct: 398 YSMLNTSIEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTDNLSSG-LIDMYAK 456
Query: 278 AGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQ 323
G + A + + + + ++V W L I+ Y + L SQ
Sbjct: 457 CGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQ 502
>gi|225450622|ref|XP_002278152.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09190
[Vitis vinifera]
Length = 485
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 160/311 (51%), Gaps = 36/311 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT++ L+++C + +G +H V VGF+ + + D+Y S G ++D+ K+F
Sbjct: 106 DEFTFAPLLKSCSGICDNRIGKGVHGVVIVVGFERFSSIRIGIIDLYTSCGRMEDAKKVF 165
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
DE+ +R+++ WN++I G +V W +I G + R EAL
Sbjct: 166 DEMLDRDVIVWNMMIRGFCKVGDIEMGFRLFRQMRDRSVVSWNSMIAGLEQSGRDGEALE 225
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LFR M + EP + T++ +LP + G V + IH Y E I V N L+D
Sbjct: 226 LFREMWDHGF-EPDDATVVTILPVCARLGAVDVGEWIHSYAESSRLLRDFISVGNSLVDF 284
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
Y KCG + +A ++F + + +KN+VSW +ISG +G G+ + FE M G++PN +
Sbjct: 285 YCKCGILETAWRVFNE--MPQKNVVSWNAMISGLTFNGKGELGADLFEEMINKGVRPNDA 342
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+G E G F M + ++ P ++H+GC++D+L R G +E+A ++
Sbjct: 343 TFVGVLSCCAHAGLVERGRNLFTSMTVDHKMEPKLEHFGCMVDLLARNGCMEEARDLVRT 402
Query: 291 IPSQITNVVVW 301
+P + N V+W
Sbjct: 403 MPMR-PNAVLW 412
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 119/299 (39%), Gaps = 53/299 (17%)
Query: 44 TQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKW 103
TQL + + + + H++ + + ++S+ D++ NLV L+ +
Sbjct: 23 TQLPQIHAHI-LRHHLHQSNQILSHFISV------CGALDKMGYANLVFHQTQNPNLLLF 75
Query: 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGE 163
+I GYS S +L LF +M P E T +L + + R + +HG
Sbjct: 76 NSMIKGYSLCGPSENSLLLFSQMKN-RGIWPDEFTFAPLLKSCSGICDNRIGKGVHGVVI 134
Query: 164 KRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR--------------------- 202
GF F + +ID Y CG + A K+F D +DR
Sbjct: 135 VVGFERFS-SIRIGIIDLYTSCGRMEDAKKVF-DEMLDRDVIVWNMMIRGFCKVGDIEMG 192
Query: 203 ---------KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS---------WRI 244
+++VSW ++I+G G EA+E F M G +P+ + R+
Sbjct: 193 FRLFRQMRDRSVVSWNSMIAGLEQSGRDGEALELFREMWDHGFEPDDATVVTILPVCARL 252
Query: 245 GEEGL-KFFDKMVEECEVLPDIKHYG-CLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
G + ++ E +L D G L+D + G LE A V + +P + NVV W
Sbjct: 253 GAVDVGEWIHSYAESSRLLRDFISVGNSLVDFYCKCGILETAWRVFNEMPQK--NVVSW 309
>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 100/334 (29%), Positives = 168/334 (50%), Gaps = 59/334 (17%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS--- 79
D+ TY FL++ C ++G Q H + GF S VYV +L MY +LG +K +S
Sbjct: 112 DNLTYPFLVKACTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVF 171
Query: 80 ----------------------------KLFDELPERNLVTWNVIITGLVKWTGIIDGYS 111
KLFD++PE+NLVTW+V+I+ GY+
Sbjct: 172 RRISCLDVVSWTSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMIS----------GYA 221
Query: 112 RMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD 171
+ + ++A+ L+ + + E +E +++V+ + G + + H Y R +
Sbjct: 222 KNSFFDKAIELYFLLQS-EGVHANETVMVSVIASCAHLGALELGERAHDY-ILRNKMTVN 279
Query: 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
+ + L+D YA+CG I A +F+ + ++ +SWTT+I+GFAMHG ++A+E F RM
Sbjct: 280 LILGTALVDMYARCGSIDKAIWVFD--QLPGRDALSWTTLIAGFAMHGYAEKALEYFSRM 337
Query: 232 QKVGLKPNR-----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGR 280
+K GL P + E GL+ F+ M + + P ++HYGC++D+L RAG+
Sbjct: 338 EKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGK 397
Query: 281 LEQAEEVASGIPSQITNVVVWRT--GFLRLLINS 312
L +AE+ + +P + N +W G R+ NS
Sbjct: 398 LAEAEKFVNEMPMK-PNAPIWGALLGACRIHKNS 430
>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 596
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 95/309 (30%), Positives = 161/309 (52%), Gaps = 36/309 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++FT++FL + C +LG Q H + K F+ V+V ++ Y G L D+ +F
Sbjct: 91 NNFTFTFLFQGCSNCVAFDLGRQFHGMVIKNSFEMDVFVRNSIIRFYSVCGRLNDARWVF 150
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
DE E ++V+WN +I G ++ W +I GY++ + EALA
Sbjct: 151 DESSELDVVSWNSMIDGCIRNGNILEALSLFSKMTERNDISWNMMISGYAQNGQPKEALA 210
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LFR M + EP+ +++VL A + G + + +H Y K+ I +S LID
Sbjct: 211 LFREMQMLD-QEPNSAILVSVLSACSQLGALDHGCWVHCYIGKKCVRVDSI-LSAALIDM 268
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG I A + F ++ ++++ ++T ISG AM+G +EA++ FE+M+ G+ P+
Sbjct: 269 YAKCGSIDLAMQAF--STSRKRDVSAYTAAISGLAMNGCSEEALQLFEQMKGEGISPDGV 326
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
I E+G +F M + + P++ HY C++D+L RAG LE+AE+ +
Sbjct: 327 SYIAVLCACSHAGWVEKGFHYFASMSDVHGIRPELDHYACMVDLLGRAGLLEEAEKFVAS 386
Query: 291 IPSQITNVV 299
+P + NV+
Sbjct: 387 MPIKPDNVI 395
>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Glycine max]
Length = 821
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 157/290 (54%), Gaps = 24/290 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FDS T LIR C S G LH+ + +SH+ ++TA+ DMY G +K ++ +
Sbjct: 345 FDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIV 404
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F + ++N++TW ++ GL + +GY+ +AL LF +M E + +T+++
Sbjct: 405 FGRMGKKNVITWTAMLVGLSQ-----NGYAE-----DALKLFCQMQE-EKVAANSVTLVS 453
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
++ G + + +H + + G+ AFD +++ LID YAKCG I SA KLF +
Sbjct: 454 LVHCCAHLGSLTKGRTVHAHFIRHGY-AFDAVITSALIDMYAKCGKIHSAEKLF-NNEFH 511
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
K+++ ++I G+ MHG G+ A+ + RM + LKPN++ + EEG
Sbjct: 512 LKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKA 571
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
F M + +V P KHY CL+D+ RAGRLE+A+E+ +P Q + V+
Sbjct: 572 LFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVL 621
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/338 (24%), Positives = 150/338 (44%), Gaps = 54/338 (15%)
Query: 15 HSPLPPLF----------DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTA 64
H +P LF +S+T F ++ C L +G ++ + GF H+YV ++
Sbjct: 126 HMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSS 185
Query: 65 LGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK----WTGIIDGYSRMNRSNEAL 120
+ + V G+L D+ K+FD +PE+++V WN II G V+ W E++
Sbjct: 186 MVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFW--------------ESI 231
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
+F M PS +T+ +L A ++G + H Y G D+ V L+D
Sbjct: 232 QMFLEMIG-GGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGN-DVFVLTSLVD 289
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
Y+ G SA+ +F+ S+ ++L+SW +ISG+ +GM E+ F R+ + G +
Sbjct: 290 MYSNLGDTGSAALVFD--SMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDS 347
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHY----GCLIDILERAGRLEQAE 285
+ E G +++ C + +++ + ++D+ + G ++QA
Sbjct: 348 GTLVSLIRGCSQTSDLENG-----RILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQAT 402
Query: 286 EVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQ 323
V + + NV+ W + L N Y + L Q
Sbjct: 403 IVFGRMGKK--NVITWTAMLVGLSQNGYAEDALKLFCQ 438
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 61/251 (24%), Positives = 105/251 (41%), Gaps = 41/251 (16%)
Query: 15 HSPL----PPLFDSFTYSF---LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGD 67
H+P P +F S + F LI +HA K + ++ L
Sbjct: 38 HAPFFNQAPSVFSSLLHQFSNTLIHV----------KSIHAQIIKNWVSTESFLAAKLIR 87
Query: 68 MYVSLGFLKDSSKLFDE--LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRR 125
+Y LGFL + +FD+ LPE + +I G+ R + E LFR
Sbjct: 88 VYSDLGFLGHARNVFDQCSLPETAVC------------NAMIAGFLRNQQHMEVPRLFRM 135
Query: 126 MAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC 185
M +C+ S + A+ + ++I +RGF+ ++V + +++ K
Sbjct: 136 MGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRA-AVRRGFH-LHLYVGSSMVNFLVKR 193
Query: 186 GCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP------N 239
G + A K+F+ + K++V W +II G+ G+ E+++ F M GL+P N
Sbjct: 194 GYLADAQKVFD--GMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMAN 251
Query: 240 RSWRIGEEGLK 250
G+ GLK
Sbjct: 252 LLKACGQSGLK 262
>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
Length = 538
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 99/297 (33%), Positives = 154/297 (51%), Gaps = 31/297 (10%)
Query: 19 PPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
PP ++FT+ FL+ +C LS G ++H+ K GF+S ++V AL +Y G L +
Sbjct: 32 PP--NNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLA 89
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
LFDE R+LV++N +I GY+ +N+ AL LF M E+T
Sbjct: 90 RTLFDESLVRDLVSYNT----------MIKGYAEVNQPESALCLFGEM-----QNSDEVT 134
Query: 139 ILAVLPAIWKNGEVR-NCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
++AVL A + G +L H Y E FN I ++ ++D YAKCG I SA ++F
Sbjct: 135 LVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTI-LTAAVMDMYAKCGSIDSALEIFRR 193
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------E 246
+ K + ++I+G A HG+G+ A+ F + GLKP+ +G E
Sbjct: 194 VGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIE 253
Query: 247 EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
EG K F+ M + P ++HYGC++D+L R G LE+A ++ +P + N V+WR
Sbjct: 254 EGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFE-ANSVIWRA 309
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
W +I GYSR + EA+ L+ M A P+ T +L + + + +H +
Sbjct: 2 WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
K GF + D+ V N LI Y+ G + A LF+++ V ++LVS+ T+I G+A +
Sbjct: 62 IKHGFES-DLFVRNALIHLYSVFGNLNLARTLFDESLV--RDLVSYNTMIKGYAEVNQPE 118
Query: 223 EAVENFERMQ 232
A+ F MQ
Sbjct: 119 SALCLFGEMQ 128
>gi|218192167|gb|EEC74594.1| hypothetical protein OsI_10176 [Oryza sativa Indica Group]
Length = 523
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 103/345 (29%), Positives = 165/345 (47%), Gaps = 68/345 (19%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS--- 79
D T+ F++R C + + G Q+HA K G +S +V AL M+ S G L ++
Sbjct: 81 DKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALF 140
Query: 80 ----------------------------KLFDELPERNLVTWNVIITG------------ 99
LFDE P ++LV+WNV+IT
Sbjct: 141 DGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARE 200
Query: 100 ---------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
+V W +I GY R AL LF +M +P +T+L++L A +G
Sbjct: 201 LFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMG-EKPDIVTMLSLLSACADSG 259
Query: 151 EVRNCQLIHG-YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWT 209
++ Q +H + N F + + N LID YAKCG + SA ++F S+ K++ +W
Sbjct: 260 DLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVF--WSMRDKDVSTWN 317
Query: 210 TIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEE 258
+I+ G A+HG E+++ FE+M K ++P+ + ++G +FF+ M +
Sbjct: 318 SIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHK 377
Query: 259 CEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
V P+IKHYGC++D+L RAG L++A E + + N V+WRT
Sbjct: 378 YRVEPNIKHYGCIVDMLGRAGLLKEAFEFIDTMKCE-PNSVIWRT 421
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 18/201 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHA----VFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
D T L+ C ++G +LH+ +FS+ GF V + AL DMY G +K +
Sbjct: 244 DIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFP--VVLGNALIDMYAKCGSMKSA 301
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
++F + ++++ TWN I+ GL ++ E++ +F +M + P EIT
Sbjct: 302 HEVFWSMRDKDVSTWNSIVGGLALHGHVL----------ESIDMFEKMLKGK-VRPDEIT 350
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+AVL A G V + + + +I C++D + G + A + F DT
Sbjct: 351 FVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCIVDMLGRAGLLKEAFE-FIDT 409
Query: 199 SVDRKNLVSWTTIISGFAMHG 219
N V W T++S +HG
Sbjct: 410 MKCEPNSVIWRTLLSACRVHG 430
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 106/275 (38%), Gaps = 62/275 (22%)
Query: 55 FQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMN 114
F S V V A+ Y+ +FD++P + +N +I G
Sbjct: 18 FASAVAVRGAIAHAYL----------VFDQIPRPDRFMYNTLIRGAAHTAA--------- 58
Query: 115 RSNEALALFRRM---AACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD 171
+A++L+ RM P ++T VL A G +H + K G + D
Sbjct: 59 -PRDAVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCES-D 116
Query: 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
V N LI +A CG + A+ LF+ + R++ V+W+ +I+G A G A + F
Sbjct: 117 AFVKNALIGMHASCGNLGIAAALFDGRA--REDAVAWSAMITGCARRGDIGAARDLF--- 171
Query: 232 QKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
+EC V D+ + +I + G + A E+ +
Sbjct: 172 -------------------------DECPV-KDLVSWNVMITAYAKRGDMALARELFDQV 205
Query: 292 PSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLF 326
P + +VV W ++I+ Y L++ LF
Sbjct: 206 PER--DVVSW-----NVMISGYVRCGSHLHALELF 233
>gi|449517761|ref|XP_004165913.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Cucumis sativus]
Length = 600
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 100/355 (28%), Positives = 162/355 (45%), Gaps = 66/355 (18%)
Query: 9 QIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDM 68
Q Y+H L S+T+S L++ C + LG +H K GF+SH++V TAL D
Sbjct: 123 QCYVHMLEESNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFESHLFVQTALVDF 182
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK---------------------WTGII 107
Y L L ++ K+FDE+ ER+ W +++ L + W +I
Sbjct: 183 YSKLEILSEARKVFDEMCERDAFAWTAMLSALARVGDMDSARKLFEEMPERNTATWNTMI 242
Query: 108 DGYSRMNRSNEALALFRRM-----------------------AACEYTE-------PSEI 137
DGY+R+ A LF +M A Y+E P E+
Sbjct: 243 DGYTRLGNVESAELLFNQMPTKDIISWTTMITCYSQNKQYQDALAIYSEMRLNGIIPDEV 302
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
T+ V A G + + IH Y +G N D+++ + L+D YAKCG + + +F
Sbjct: 303 TMSTVASACAHIGALELGKEIHHYVMSQGLN-LDVYIGSALVDMYAKCGSLDLSLLIF-- 359
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------E 246
+ KNL W +I G A+HG ++A+ F M++ + PN I +
Sbjct: 360 FKLTDKNLYCWNAVIEGLAVHGYAEKALRMFAIMEREKIMPNGVTFISILSACTHAGLVD 419
Query: 247 EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
EG F M + ++ PDI+HYGC++D+L ++G L +A E+ + + N ++W
Sbjct: 420 EGRSRFLSMTRDYDIRPDIRHYGCMVDMLSKSGYLNEALELIKSMEFE-PNSIIW 473
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/214 (26%), Positives = 96/214 (44%), Gaps = 25/214 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T S + C + LG ++H G VY+ +AL DMY G L S +F
Sbjct: 300 DEVTMSTVASACAHIGALELGKEIHHYVMSQGLNLDVYIGSALVDMYAKCGSLDLSLLIF 359
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+L ++NL WN +I GL + GY+ +AL +F M E P+ +T +++
Sbjct: 360 FKLTDKNLYCWNAVIEGLA-----VHGYAE-----KALRMFAIMER-EKIMPNGVTFISI 408
Query: 143 LPA-----IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
L A + G R + Y + DI C++D +K G + A +L +
Sbjct: 409 LSACTHAGLVDEGRSRFLSMTRDYDIRP-----DIRHYGCMVDMLSKSGYLNEALELIKS 463
Query: 198 TSVDRKNLVSWTTIISGFAMHG---MGKEAVENF 228
+ +++ W +++G +HG + ++AVE
Sbjct: 464 MEFEPNSII-WGALLNGCKLHGNCEIAEDAVEQL 496
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 120/294 (40%), Gaps = 58/294 (19%)
Query: 17 PL-PPLFDSFTYSFL--IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG 73
PL PP SF + L I+ C T++ +LH + + + +++ + L ++S
Sbjct: 29 PLQPPSRPSFKQTLLNRIKNCSTIN------ELHGLCASM-IKTNAIQDCFLVHQFISAS 81
Query: 74 FLKDSSKL----FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC 129
F +S F ++ N+ +N +I G V GY AL + M
Sbjct: 82 FALNSVHYPVFAFTQMENPNVFVYNAMIKGFVYC-----GYPF-----RALQCYVHMLEE 131
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
P+ T +++ A V Q++H + K+GF + + V L+D Y+K +
Sbjct: 132 SNVLPTSYTFSSLVKACTFMCAVELGQMVHCHIWKKGFES-HLFVQTALVDFYSKLEILS 190
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGL 249
A K+F++ ++ +WT ++S A G A + FE M P R
Sbjct: 191 EARKVFDEMC--ERDAFAWTAMLSALARVGDMDSARKLFEEM------PER--------- 233
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ + +ID R G +E AE + + +P++ +++ W T
Sbjct: 234 --------------NTATWNTMIDGYTRLGNVESAELLFNQMPTK--DIISWTT 271
>gi|357516905|ref|XP_003628741.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355522763|gb|AET03217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 758
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 118/427 (27%), Positives = 190/427 (44%), Gaps = 109/427 (25%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTAL----------------- 65
+ FT+ +I++C L G ++H +K GF+S+ +V T+L
Sbjct: 109 NCFTFPMIIKSCGKLEGVREGEEVHCCATKHGFKSNSFVATSLIDMYSKKGCVEDAYKVF 168
Query: 66 GDM--------------YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK--------- 102
G+M Y+ G + +LFD PER++V W+V+I+G ++
Sbjct: 169 GEMHERNVVVWTAIINGYILCGDVVSGRRLFDLAPERDVVMWSVLISGYIESKNMAAARE 228
Query: 103 -------------------------------------------WTGIIDGYSRMNRSNEA 119
W G+I GY + +E
Sbjct: 229 LFDKMPNRDTMSWNAMLNGYAVNGEVEMFEKVFDEMPERNVFSWNGLIGGYVKNGLFSET 288
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
L F+RM + P++ T++AVL A + G + + +H Y E G+ ++ V N LI
Sbjct: 289 LESFKRMLVEGHVIPNDFTLVAVLSACSRLGALDMGKWVHVYAESIGYKG-NLFVGNVLI 347
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D YAKCG I +A +F +DRK+++SW TII+G A+HG +A+ F+RM+ G +P+
Sbjct: 348 DMYAKCGVIENAVVVF--NCLDRKDIISWNTIINGLAIHGHAPDALGMFDRMKSEGEEPD 405
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
+G ++G +F MV+ ++P I+HYGC++D+L RAG L+QA
Sbjct: 406 GVTFVGILSACTHMGLVKDGFLYFKSMVDHYSIVPQIEHYGCMVDLLGRAGLLDQALNFI 465
Query: 289 SGIPSQITNVVVWRT--GFLRLLINSYFFSPITLNSQRLFFF----PAALYALTQILGFK 342
+P + + V+W G RL N L QRL PA ++ I +K
Sbjct: 466 RKMPIE-PDAVIWAALLGACRLYKN---VEIAELALQRLIELEPNNPANFVMVSNI--YK 519
Query: 343 PLFRKES 349
L R E
Sbjct: 520 DLGRSED 526
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 133/315 (42%), Gaps = 54/315 (17%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
L+R+C +Y L Q+ A G + + +V + + KLFD++P+ N
Sbjct: 18 LLRSCK--NYERL-HQIQAQIVTHGLEHNDFVAPNFITTCSRFKRIHHARKLFDKIPQPN 74
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALF---RRMAACEYTEPSEITILAVLPAI 146
TWN + G ++ +G+ R + + LF R+A P+ T ++ +
Sbjct: 75 TATWNAMFRGYLQ-----NGHHR-----DTVVLFGELNRIAGM----PNCFTFPMIIKSC 120
Query: 147 WKNGEVRNCQLIHGYGEKRGF--NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
K VR + +H K GF N+F V+ LID Y+K GC+ A K+F + + +N
Sbjct: 121 GKLEGVREGEEVHCCATKHGFKSNSF---VATSLIDMYSKKGCVEDAYKVFGE--MHERN 175
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS---WRIGEEGL----------KF 251
+V WT II+G+ + G F+ L P R W + G +
Sbjct: 176 VVVWTAIINGYILCGDVVSGRRLFD------LAPERDVVMWSVLISGYIESKNMAAAREL 229
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLIN 311
FDKM D + +++ G +E E+V +P + NV W G + +
Sbjct: 230 FDKMPNR-----DTMSWNAMLNGYAVNGEVEMFEKVFDEMPER--NVFSW-NGLIGGYVK 281
Query: 312 SYFFSPITLNSQRLF 326
+ FS + +R+
Sbjct: 282 NGLFSETLESFKRML 296
>gi|125529041|gb|EAY77155.1| hypothetical protein OsI_05121 [Oryza sativa Indica Group]
Length = 916
Score = 154 bits (388), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 160/295 (54%), Gaps = 29/295 (9%)
Query: 11 YIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV 70
++HS L P DS T ++ C L +LG +H + K + ++ V AL MY
Sbjct: 562 FMHSTLTLNP--DSITLVSVLSVCGNLKLQSLGKSIHCMALKRLIEFNLRVKNALLTMYF 619
Query: 71 SLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE 130
G + + +F L RNL +WN +I+ G+++ N AL +++M E
Sbjct: 620 RFGDTESAELIFSSLVGRNLCSWNCMIS----------GFAQNNEGLRALQFYKKM---E 666
Query: 131 YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190
Y EP+EI+I+ ++ A + G++R + IHG+ + G ++ +S L+D Y+KCG +
Sbjct: 667 YFEPNEISIVGIICACTQLGDLRQGKNIHGHVVRFGLQT-NVFISASLVDMYSKCGRLDI 725
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG----- 245
+ ++FE ++ K++ W ++IS F HG+G +++E F +M G+K RS I
Sbjct: 726 SIRVFESSA--EKSIACWNSMISAFGFHGLGLKSIEIFWKMNNSGVKATRSTFIALLSAC 783
Query: 246 ------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
+EGLK++ M+E ++P +H+ C++D+L RAGRL++A + +PS+
Sbjct: 784 SHSGLTDEGLKYYHLMIEHFGIIPTPEHHVCVVDMLGRAGRLQEAHKFVESLPSK 838
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 23 DSFTYSFLIRTCVTL-SYPNLGTQLHAVFSKVGFQSHVY-VNTALGDMYVSLGFLKDSSK 80
D + S ++ C L + G +H+ K+G++ V +L Y LGF + + +
Sbjct: 264 DEVSLSCVLSACSHLKDLFSFGESVHSSVIKLGYEDTTSSVENSLITFYYELGFPEAAEE 323
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F +NLVTWN +I GLV+ +R NEA+ +F+ M + +P T++
Sbjct: 324 VFLSTSNKNLVTWNAMIKGLVE----------NDRVNEAMCMFQEMRS--KNQPDVATLV 371
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
++ A G + + +HGY K+G + V N L+D Y KC +A LF ++
Sbjct: 372 TIISACGDRGLLPEGKEVHGYIIKKGHIYEECSVGNSLLDLYMKCNDPSTARILFR--TM 429
Query: 201 DRKNLVSWTTIISGFAMH-GMGKEAVENFERMQKVGL 236
++L+SW T+ISG++ + +G+EA F+ + GL
Sbjct: 430 PMRDLISWNTMISGYSRNDSLGEEAKAMFKGLLSEGL 466
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 142/319 (44%), Gaps = 53/319 (16%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL-PER 88
+I +C N G +H+ K GF + V +L MY+ G + L + + P
Sbjct: 476 VIPSCFCPQDLNFGKSVHSFILKYGFLTGVSAANSLIHMYICCGDSLAAFSLLESITPMS 535
Query: 89 NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148
++++WN I G V+ G+ +AL F+ M + P IT+++VL ++
Sbjct: 536 DIISWNTAIVGCVQ-NGLY---------GDALEAFQFMHSTLTLNPDSITLVSVL-SVCG 584
Query: 149 NGEVRNC-QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
N ++++ + IH KR F++ V N L+ Y + G SA +F +S+ +NL S
Sbjct: 585 NLKLQSLGKSIHCMALKR-LIEFNLRVKNALLTMYFRFGDTESAELIF--SSLVGRNLCS 641
Query: 208 WTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKH 267
W +ISGFA + G A++ +++M+ +PN +G ++ C L D++
Sbjct: 642 WNCMISGFAQNNEGLRALQFYKKMEY--FEPNEISIVG---------IICACTQLGDLRQ 690
Query: 268 -------------------YGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRL 308
L+D+ + GRL+ + V S ++ W +
Sbjct: 691 GKNIHGHVVRFGLQTNVFISASLVDMYSKCGRLDISIRVFES--SAEKSIACWNS----- 743
Query: 309 LINSYFFSPITLNSQRLFF 327
+I+++ F + L S +F+
Sbjct: 744 MISAFGFHGLGLKSIEIFW 762
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 91/213 (42%), Gaps = 14/213 (6%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
+FDS + ++ G H + K + + + L DMY G S
Sbjct: 161 VFDSTSMVIMLSGASRARSLEHGIAFHGMALKRRLDTDLSLWNTLMDMYAKCGDFYSSEV 220
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F +P R+ +WN +++G + +G + ++ F+ M + + E+++
Sbjct: 221 VFQRMPYRDTTSWNSMVSG-----SLFNGLAEISA-----YYFKEMVRSSF-QADEVSLS 269
Query: 141 AVLPAIWKNGEVRN-CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
VL A ++ + + +H K G+ V N LI Y + G +A ++F TS
Sbjct: 270 CVLSACSHLKDLFSFGESVHSSVIKLGYEDTTSSVENSLITFYYELGFPEAAEEVFLSTS 329
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQ 232
KNLV+W +I G + EA+ F+ M+
Sbjct: 330 --NKNLVTWNAMIKGLVENDRVNEAMCMFQEMR 360
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 16/161 (9%)
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMN-RSNEALALFRRMAACEYTEPSEIT 138
++FDE +L+ WN I+ L +N R +A+ LFR M S +
Sbjct: 119 QVFDEAAAPDLILWNAAISALT-----------LNCRYGDAVVLFRWMVDVLGVFDS-TS 166
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
++ +L + + + HG KR + D+ + N L+D YAKCG +S+ +F+
Sbjct: 167 MVIMLSGASRARSLEHGIAFHGMALKRRLDT-DLSLWNTLMDMYAKCGDFYSSEVVFQ-- 223
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+ ++ SW +++SG +G+ + + F+ M + + +
Sbjct: 224 RMPYRDTTSWNSMVSGSLFNGLAEISAYYFKEMVRSSFQAD 264
>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14820-like [Vitis vinifera]
Length = 731
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 152/294 (51%), Gaps = 39/294 (13%)
Query: 42 LGTQLHAVFSKVGFQSHVYV--NTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG 99
+G +HA + H+ V TAL DMY G L + +LF+ L ++ +V+W +I G
Sbjct: 243 MGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAG 302
Query: 100 LVK---------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
++ WT ++ Y++ N ++A LF +M P+++T
Sbjct: 303 CIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRT-SGVRPTKVT 361
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
I+++L G + + +H Y +K D ++ L+D YAKCG I +A +LF
Sbjct: 362 IVSLLSLCAVAGALDLGKWVHSYIDKERVE-VDCILNTALVDMYAKCGDINAAGRLF--I 418
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EE 247
+++ W II+GFAMHG G+EA++ F M++ G+KPN IG E
Sbjct: 419 EAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTE 478
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
G K F+KMV ++P I+HYGC++D+L RAG L++A E+ +P + N +VW
Sbjct: 479 GKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIK-PNTIVW 531
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 109/231 (47%), Gaps = 22/231 (9%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
VY QL+++ D+F +++ C +S+ LG ++H K G V+V
Sbjct: 111 VYAQLRKMDFE--------VDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVG 162
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
AL MY ++ + +FD++ ER++V+W+ +I L SR + AL L
Sbjct: 163 NALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSL----------SRNKEFDMALEL 212
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNA-FDIHVSNCLIDT 181
R M + PSE+ +++++ +R + +H Y + N + + L+D
Sbjct: 213 IREMNFMQ-VRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDM 271
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQ 232
YAKCG + A +LF + +K +VSWT +I+G +EA F+ Q
Sbjct: 272 YAKCGHLGLARQLF--NGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQ 320
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 85/194 (43%), Gaps = 22/194 (11%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
L+ C +LG +H+ K + +NTAL DMY G + + +LF E R+
Sbjct: 365 LLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRD 424
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
+ WN IITG + GY EAL +F M + +P++IT + +L A
Sbjct: 425 ICMWNAIITGFA-----MHGYGE-----EALDIFAEMER-QGVKPNDITFIGLLHACSHA 473
Query: 150 GEVRNC-----QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
G V +++H +G + C++D + G + A ++ + + + N
Sbjct: 474 GLVTEGKKLFEKMVHTFGLVPQIEHY-----GCMVDLLGRAGLLDEAHEMIKSMPI-KPN 527
Query: 205 LVSWTTIISGFAMH 218
+ W +++ +H
Sbjct: 528 TIVWGALVAACRLH 541
>gi|347954504|gb|AEP33752.1| chloroplast biogenesis 19, partial [Lobularia maritima]
Length = 496
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 99/313 (31%), Positives = 154/313 (49%), Gaps = 39/313 (12%)
Query: 23 DSFTYSFLIRTCVTLSY--PNLGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSS 79
+ T+ L+ C S + G LH K+G ++HV V TA+ MY G + +
Sbjct: 66 NHITFIALLSGCGDFSSGSESFGDLLHGYACKLGLDRNHVMVGTAIIGMYSKHGRVSKAR 125
Query: 80 KLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNE 118
+FD + +N +TWN +I G L+ WT +I+G+ + E
Sbjct: 126 LVFDHMEGKNSMTWNTMIDGYMRKGKIDDAYKLFDEMPERGLISWTAMINGFVKKGFHEE 185
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
AL FR M + EP + I+AVL A G + +H Y R F ++ V+N
Sbjct: 186 ALVWFREMQSSG-VEPDYVAIIAVLAACTNLGALSFGLWVHRYLVSRDFRN-NVRVNNSS 243
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
ID + +CGC+ A +F+ ++++ +VSW ++I F+ +G E++ F RMQ+ G KP
Sbjct: 244 IDLHCRCGCVELAQPVFD--HMEKRTVVSWNSVIVVFSANGHADESLVYFRRMQEEGFKP 301
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
N G EEGL++F M +E + P I+HYGCL+D+ RAGRLE A V
Sbjct: 302 NAVTFTGALTACSHVGLVEEGLRYFQTMKKEYRISPRIEHYGCLVDLYSRAGRLEDALNV 361
Query: 288 ASGIPSQITNVVV 300
+P + VV+
Sbjct: 362 VQSMPMKPNEVVI 374
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 83/190 (43%), Gaps = 12/190 (6%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
++ C L + G +H F+++V VN + D++ G ++ + +FD + +R
Sbjct: 208 VLAACTNLGALSFGLWVHRYLVSRDFRNNVRVNNSSIDLHCRCGCVELAQPVFDHMEKRT 267
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
+V+WN +I +S ++E+L FRRM E +P+ +T L A
Sbjct: 268 VVSWNSVIV----------VFSANGHADESLVYFRRMQE-EGFKPNAVTFTGALTACSHV 316
Query: 150 GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWT 209
G V +K + I CL+D Y++ G + A + + + + N V
Sbjct: 317 GLVEEGLRYFQTMKKEYRISPRIEHYGCLVDLYSRAGRLEDALNVVQSMPM-KPNEVVIG 375
Query: 210 TIISGFAMHG 219
++++ HG
Sbjct: 376 SLLAACRTHG 385
>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 624
Score = 154 bits (388), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 154/293 (52%), Gaps = 27/293 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + C L +LG ++H +F+ GF V+V ++L DMY G ++D+ K+F
Sbjct: 230 DEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKCGQIEDARKVF 289
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +P RN V WT +I GY++ + EA+ LFR M + + TI V
Sbjct: 290 DRIPHRNTVC----------WTSMIAGYAQSDLFKEAIELFREMQIGGFAADAA-TIACV 338
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + + IH Y E+ D++ N LI Y+KCG I A ++F + +
Sbjct: 339 LSACGHWGALAQGRWIHLYCERNSIE-MDLNARNALIGMYSKCGDIQKALEIFH--GLTQ 395
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-LKPNRSWRIG-----------EEGLK 250
++ SW+ +ISG AM+G +A+ F +M+ + ++PN +G ++GL
Sbjct: 396 PDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLY 455
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+F+ M + + P I+HYGC++D+L RA L +AE+ +P Q +VV+WR+
Sbjct: 456 YFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQ-PDVVIWRS 507
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 77/282 (27%), Positives = 137/282 (48%), Gaps = 23/282 (8%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D++++ F+++ C LS + G ++H+ K+G V+V AL + S G ++ +
Sbjct: 124 LPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARA 183
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD LP ++ +V W +I GY + +R AL +F + P E+T++
Sbjct: 184 VFDMLP--------ALVRDVVSWNSMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLV 235
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+ L + G + + IHG GF D+ V + LID Y+KCG I A K+F+ +
Sbjct: 236 SALSVCGRLGLLDLGKKIHGLFTGSGF-VLDVFVGSSLIDMYSKCGQIEDARKVFD--RI 292
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS-----------WRIGEEGL 249
+N V WT++I+G+A + KEA+E F MQ G + + W +G
Sbjct: 293 PHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVLSACGHWGALAQG- 351
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
++ E + D+ LI + + G +++A E+ G+
Sbjct: 352 RWIHLYCERNSIEMDLNARNALIGMYSKCGDIQKALEIFHGL 393
>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Cucumis sativus]
Length = 849
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 152/292 (52%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT+S ++ C L+ +G Q+ K+GF S V +L MY G + D+ K F
Sbjct: 375 NHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAF 434
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D L E+NL+++N +ID Y++ S EAL LF + + S T ++
Sbjct: 435 DILFEKNLISYNT----------VIDAYAKNLNSEEALELFNEIED-QGMGASAFTFASL 483
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L G + + IH K G + V N LI Y++CG I SA ++FED ++
Sbjct: 484 LSGAASIGTIGKGEQIHARVIKSGLK-LNQSVCNALISMYSRCGNIESAFQVFED--MED 540
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+N++SWT+II+GFA HG +A+E F +M + G++PN I EG K
Sbjct: 541 RNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKH 600
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F M E V+P ++HY C++DIL R+G L +A + + +P + + +VWRT
Sbjct: 601 FKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYK-ADALVWRT 651
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 84/289 (29%), Positives = 132/289 (45%), Gaps = 46/289 (15%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYVS-LGFLKDSSK 80
+ + ++ R C T + ++G + K G+ QS V V L DM+V G L + K
Sbjct: 167 NEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFK 226
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F+++PERN VTW ++IT L+++ GY + EA+ LF M Y EP T+
Sbjct: 227 VFEKMPERNAVTWTLMITRLMQF-----GY-----AGEAIDLFLEMILSGY-EPDRFTLS 275
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC---GCIFSASKLFED 197
V+ A + Q +H + G D V CLI+ YAKC G + +A K+F D
Sbjct: 276 GVISACANMELLLLGQQLHSQAIRHGL-TLDRCVGCCLINMYAKCSVDGSMCAARKIF-D 333
Query: 198 TSVDRKNLVSWTTIISGFAMH-GMGKEAVENFERMQKVGLKPNR--------------SW 242
+D N+ SWT +I+G+ G +EA++ F M + PN +
Sbjct: 334 QILDH-NVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAAL 392
Query: 243 RIGEEGLKFFDKMVEECEVLPDIKHYGC----LIDILERAGRLEQAEEV 287
RIGE+ K+ C LI + R+GR++ A +
Sbjct: 393 RIGEQVFTHAVKL--------GFSSVNCVANSLISMYARSGRIDDARKA 433
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 136/303 (44%), Gaps = 35/303 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL---GFLKDSS 79
D FT S +I C + LG QLH+ + G V L +MY G + +
Sbjct: 270 DRFTLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAAR 329
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGY-SRMNRSNEALALFRRMAACEYTEPSEIT 138
K+FD++ + N+ +W +IT GY + EAL LFR M + P+ T
Sbjct: 330 KIFDQILDHNVFSWTAMIT----------GYVQKGGYDEEALDLFRGMIL-THVIPNHFT 378
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+ L A +R + + + K GF++ + V+N LI YA+ G I A K F+
Sbjct: 379 FSSTLKACANLAALRIGEQVFTHAVKLGFSSVNC-VANSLISMYARSGRIDDARKAFD-- 435
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---------SWRIGE--E 247
+ KNL+S+ T+I +A + +EA+E F ++ G+ + + IG +
Sbjct: 436 ILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGK 495
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR---TG 304
G + ++++ L + LI + R G +E A +V + + NV+ W TG
Sbjct: 496 GEQIHARVIKSGLKL-NQSVCNALISMYSRCGNIESAFQVFEDMEDR--NVISWTSIITG 552
Query: 305 FLR 307
F +
Sbjct: 553 FAK 555
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 95/213 (44%), Gaps = 29/213 (13%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
+FT++ L+ ++ G Q+HA K G + + V AL MY G ++ + ++F+
Sbjct: 477 AFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFE 536
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
++ +RN+++W IITG K G+ + +AL LF +M E P+ +T +AVL
Sbjct: 537 DMEDRNVISWTSIITGFAK-----HGF-----ATQALELFHKMLE-EGVRPNLVTYIAVL 585
Query: 144 PAIWKNGEV-------RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
A G V ++ HG + A C++D + G + A +
Sbjct: 586 SACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYA-------CMVDILGRSGSLSEAIQFIN 638
Query: 197 DTSVDRKNLVSWTTIISGFAMHG---MGKEAVE 226
LV W T + +HG +GK A +
Sbjct: 639 SMPYKADALV-WRTFLGACRVHGNLELGKHAAK 670
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 96/220 (43%), Gaps = 15/220 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D TYS ++ C+ ++GT +H ++ Q +L +Y G + ++ +F
Sbjct: 65 DLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIF 124
Query: 83 DEL-PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
+ R+L++W+ +++ ++ N AL F M Y P+E A
Sbjct: 125 QLMGSSRDLISWSAMVSC----------FANNNMGFRALLTFVDMIENGYY-PNEYCFAA 173
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC-GCIFSASKLFEDTSV 200
A V I G+ K G+ D+ V LID + K G + SA K+FE +
Sbjct: 174 ATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFE--KM 231
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+N V+WT +I+ G EA++ F M G +P+R
Sbjct: 232 PERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDR 271
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 17/158 (10%)
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
N LI Y+KCG A+ +F+ R +L+SW+ ++S FA + MG A+ F M + G
Sbjct: 105 NSLISLYSKCGQWEKATSIFQLMGSSR-DLISWSAMVSCFANNNMGFRALLTFVDMIENG 163
Query: 236 LKPN--------RSWRIGE---EGLKFFDKMVEECEVLPDIKHYGC-LIDILERA-GRLE 282
PN R+ E G F +V+ + D+ GC LID+ + G L
Sbjct: 164 YYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVC-VGCGLIDMFVKGRGDLV 222
Query: 283 QAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITL 320
A +V +P + N V W RL+ Y I L
Sbjct: 223 SAFKVFEKMPER--NAVTWTLMITRLMQFGYAGEAIDL 258
>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 547
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 93/259 (35%), Positives = 142/259 (54%), Gaps = 26/259 (10%)
Query: 50 FSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDG 109
+ + F+ +V + T+L DMY G ++ + LFD +PERNLV+WN IITG
Sbjct: 224 YCQSKFEFNVILATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNSIITG---------- 273
Query: 110 YSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNA 169
YS+ + EA+ +F M P ++T +V+ A G + Q IH Y K GF
Sbjct: 274 YSQNGDAEEAMCMFSDMLDLGIA-PDKVTFFSVIRASMIQGCSQLGQTIHAYVSKTGF-V 331
Query: 170 FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFE 229
D + L++ YAK G SA K+FED +++K+ ++WT +I G A HG G +A+ F+
Sbjct: 332 KDAAIVCALVNMYAKTGNAESAKKMFED--LEKKDTIAWTVVIIGLASHGHGNKALSIFQ 389
Query: 230 RMQKVG-LKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILER 277
RMQ+ G P+ +G EEG ++F +M + + P ++HYGC++DIL R
Sbjct: 390 RMQEEGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLYGLEPTVEHYGCMVDILSR 449
Query: 278 AGRLEQAEEVASGIPSQIT 296
AGR E+AE + +P Q T
Sbjct: 450 AGRFEEAERLVKTMPVQPT 468
Score = 104 bits (259), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 123/233 (52%), Gaps = 28/233 (12%)
Query: 8 QQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGD 67
Q++ +SP D FT+ ++++ C L G+ +H K GF+ ++YV+T L
Sbjct: 95 QEMLRKGYSP-----DYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLH 149
Query: 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA 127
MY+ G + ++F+++P+ N+V W +I+G V NR ++A+ FR M
Sbjct: 150 MYMCCGEVNWGLRVFEDIPKLNVVAWGSLISGFVN----------NNRFSDAIEAFREMQ 199
Query: 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC 187
+ +P+E ++ +L A + Y + + F++ ++ LID YAKCG
Sbjct: 200 SIG-VKPNETIMVDLLVACGR--------CFDPYCQSK--FEFNVILATSLIDMYAKCGD 248
Query: 188 IFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+ +A LF+ + +NLVSW +II+G++ +G +EA+ F M +G+ P++
Sbjct: 249 MRTARYLFD--GMPERNLVSWNSIITGYSQNGDAEEAMCMFSDMLDLGIAPDK 299
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 9/203 (4%)
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
W +I GYS ++AL ++ M Y+ P T VL A +++ +HG+
Sbjct: 74 WNSMIRGYSNSPNPDKALIFYQEMLRKGYS-PDYFTFPYVLKACSGLRDIQFGSCVHGFV 132
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
K GF +++VS CL+ Y CG + ++FED + + N+V+W ++ISGF +
Sbjct: 133 VKTGFEV-NMYVSTCLLHMYMCCGEVNWGLRVFED--IPKLNVVAWGSLISGFVNNNRFS 189
Query: 223 EAVENFERMQKVGLKPNRSWRIG--EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGR 280
+A+E F MQ +G+KPN + + + FD + + ++ LID+ + G
Sbjct: 190 DAIEAFREMQSIGVKPNETIMVDLLVACGRCFDPYCQS-KFEFNVILATSLIDMYAKCGD 248
Query: 281 LEQAEEVASGIPSQITNVVVWRT 303
+ A + G+P + N+V W +
Sbjct: 249 MRTARYLFDGMPER--NLVSWNS 269
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 88/198 (44%), Gaps = 15/198 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ +IR + LG +HA SK GF + AL +MY G + + K+F
Sbjct: 298 DKVTFFSVIRASMIQGCSQLGQTIHAYVSKTGFVKDAAIVCALVNMYAKTGNAESAKKMF 357
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++L +++ + W V+I GL + N+AL++F+RM P IT L V
Sbjct: 358 EDLEKKDTIAWTVVIIGL----------ASHGHGNKALSIFQRMQEEGNATPDGITYLGV 407
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN--CLIDTYAKCGCIFSASKLFEDTSV 200
L A G V Q + E R + V + C++D ++ G A +L + V
Sbjct: 408 LYACSHIGLVEEGQ--RYFAEMRDLYGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPV 465
Query: 201 DRKNLVSWTTIISGFAMH 218
+ W +++G +H
Sbjct: 466 QPTANI-WGALLNGCEIH 482
>gi|347954502|gb|AEP33751.1| chloroplast biogenesis 19, partial [Lepidium virginicum]
Length = 485
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 95/292 (32%), Positives = 146/292 (50%), Gaps = 37/292 (12%)
Query: 42 LGTQLHAVFSKVGFQ-SHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG- 99
LG LH K+G + SHV V TA+ MY G L+ + +FD + ++N VTWN +I G
Sbjct: 76 LGYLLHGYACKLGLERSHVMVGTAILGMYSKSGHLRKARLVFDYIEDKNSVTWNTMIDGY 135
Query: 100 --------------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
L+ WT +I G+ + EALA FR M P + I
Sbjct: 136 MRNGQVDNAVDVFDKMPDRDLISWTAMITGFVKKGFHEEALAWFREMQ-ISGVNPDYVAI 194
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
++ + A G + +H Y + F ++ VSN LID Y +CGC+ A ++F+
Sbjct: 195 ISAVAACTNLGALSFGLWVHRYVLSQDFRN-NVRVSNSLIDLYCRCGCVEFARQVFD--K 251
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
++++ +VSW ++I GFA +G E++ F +MQ+ G P+ G EEG
Sbjct: 252 MEKRTVVSWNSVIVGFAANGNANESLVYFRKMQREGFTPDGVTFTGALTACSHVGLVEEG 311
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
++F M + + P I+HYGCL+D+ RAGRLE A V +P + VV+
Sbjct: 312 FQYFQMMKHDYRISPRIEHYGCLVDLYSRAGRLEDAFIVVESMPMKPNEVVI 363
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 34/200 (17%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
+ C L + G +H F+++V V+ +L D+Y G ++ + ++FD++ +R +
Sbjct: 198 VAACTNLGALSFGLWVHRYVLSQDFRNNVRVSNSLIDLYCRCGCVEFARQVFDKMEKRTV 257
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
V+WN +I G++ +NE+L FR+M +T P +T L A G
Sbjct: 258 VSWNSVIV----------GFAANGNANESLVYFRKMQREGFT-PDGVTFTGALTACSHVG 306
Query: 151 EVRNCQLIHGYGEKRGFNAF-----DIHVS------NCLIDTYAKCGCIFSASKLFEDTS 199
V + GF F D +S CL+D Y++ G + A + E
Sbjct: 307 LV-----------EEGFQYFQMMKHDYRISPRIEHYGCLVDLYSRAGRLEDAFIVVESMP 355
Query: 200 VDRKNLVSWTTIISGFAMHG 219
+ + N V ++++ HG
Sbjct: 356 M-KPNEVVIGSLLAACRNHG 374
>gi|242067301|ref|XP_002448927.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
gi|241934770|gb|EES07915.1| hypothetical protein SORBIDRAFT_05g001710 [Sorghum bicolor]
Length = 572
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 161/313 (51%), Gaps = 37/313 (11%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D + ++ C + + G +H+ + ++++AL ++Y S ++ + K
Sbjct: 168 LSDQLILATVLSACGHIRHLRTGKSIHSYMLVSDILINAHLSSALINLYASCASMEMAEK 227
Query: 81 LFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEA 119
L++ +P ++LV+ ++ G +V W+ +I GY+ N+ NEA
Sbjct: 228 LYNGMPRKDLVSSTAMVFGYARNRKFEIARYIFDGMPEKDVVSWSAMISGYADSNQPNEA 287
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
L+LF M C P E+T+L+V+ A G + + IH + + G N +H+ N LI
Sbjct: 288 LSLFNDMQECG-IRPDEVTMLSVISACANLGSLDKAKWIHAFIKNNGLNKI-LHICNALI 345
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D +AKCG I A +F + + +KN+++WT++I+ FAMHG GK A+ FE+M+ G++PN
Sbjct: 346 DMFAKCGGINLALNIFNE--MPQKNVITWTSMITAFAMHGDGKSALCLFEQMRNEGVEPN 403
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
+ EG F MV++ + P +HYGC++D+L RA +++A +
Sbjct: 404 EVTFLNLLYACCHAGLVHEGRSLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVNLI 463
Query: 289 SGIPSQITNVVVW 301
+ + NV VW
Sbjct: 464 ESMHLR-PNVPVW 475
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 118/265 (44%), Gaps = 30/265 (11%)
Query: 47 HAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGI 106
HA+ +VG +V TAL Y + G + D+ K+FD + R++V+W V +
Sbjct: 93 HALAFRVGSLDDGFVRTALVGAYAACGCVGDARKVFDGMAVRDVVSWGV----------M 142
Query: 107 IDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRG 166
+D Y + EAL F +M ++ + VL A +R + IH Y
Sbjct: 143 LDSYCQTRNYKEALLQFAKMKNSGVLS-DQLILATVLSACGHIRHLRTGKSIHSYMLVSD 201
Query: 167 FNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH-------- 218
+ H+S+ LI+ YA C + A KL+ + RK+LVS T ++ G+A +
Sbjct: 202 I-LINAHLSSALINLYASCASMEMAEKLY--NGMPRKDLVSSTAMVFGYARNRKFEIARY 258
Query: 219 ---GMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDIL 275
GM ++ V ++ M N+ E L F+ M +EC + PD +I
Sbjct: 259 IFDGMPEKDVVSWSAMISGYADSNQP----NEALSLFNDM-QECGIRPDEVTMLSVISAC 313
Query: 276 ERAGRLEQAEEVASGIPSQITNVVV 300
G L++A+ + + I + N ++
Sbjct: 314 ANLGSLDKAKWIHAFIKNNGLNKIL 338
>gi|19071652|gb|AAL84319.1|AC073556_36 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
Length = 545
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/345 (29%), Positives = 165/345 (47%), Gaps = 68/345 (19%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS--- 79
D T+ F++R C + + G Q+HA K G +S +V AL M+ S G L ++
Sbjct: 111 DKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALF 170
Query: 80 ----------------------------KLFDELPERNLVTWNVIITG------------ 99
LFDE P ++LV+WNV+IT
Sbjct: 171 DGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARE 230
Query: 100 ---------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
+V W +I GY R AL LF +M +P +T+L++L A +G
Sbjct: 231 LFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMG-EKPDIVTMLSLLSACADSG 289
Query: 151 EVRNCQLIHG-YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWT 209
++ Q +H + N F + + N LID YAKCG + SA ++F S+ K++ +W
Sbjct: 290 DLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVF--WSMRDKDVSTWN 347
Query: 210 TIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEE 258
+I+ G A+HG E+++ FE+M K ++P+ + ++G +FF+ M +
Sbjct: 348 SIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHK 407
Query: 259 CEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
V P+IKHYGC++D+L RAG L++A E + + N V+WRT
Sbjct: 408 YRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCE-PNSVIWRT 451
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 18/201 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHA----VFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
D T L+ C ++G +LH+ +FS+ GF V + AL DMY G +K +
Sbjct: 274 DIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFP--VVLGNALIDMYAKCGSMKSA 331
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
++F + ++++ TWN I+ GL ++ E++ +F +M + P EIT
Sbjct: 332 HEVFWSMRDKDVSTWNSIVGGLALHGHVL----------ESIDMFEKMLKGK-VRPDEIT 380
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+AVL A G V + + + +I C++D + G + A + F DT
Sbjct: 381 FVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFE-FIDT 439
Query: 199 SVDRKNLVSWTTIISGFAMHG 219
N V W T++S +HG
Sbjct: 440 MKCEPNSVIWRTLLSACRVHG 460
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 71/310 (22%), Positives = 118/310 (38%), Gaps = 77/310 (24%)
Query: 32 RTCVTLSYPNLGTQLHAVFSKVGF------------QSHVYVNTALGDMYVSLGFLKDSS 79
R C +L + Q+HAV + GF S V V A+ Y+
Sbjct: 16 RRCRSLRHIK---QMHAVMALRGFLSDPSELRELLFASAVAVRGAIAHAYL--------- 63
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM---AACEYTEPSE 136
+FD++P + +N +I G D A++L+ RM P +
Sbjct: 64 -VFDQIPRPDRFMYNTLIRGAAHTAAPRD----------AVSLYTRMLRRGGGGGVRPDK 112
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
+T VL A G +H + K G + D V N LI +A CG + A+ LF+
Sbjct: 113 LTFPFVLRACTAMGAGDTGVQVHAHVVKAGCES-DAFVKNALIGMHASCGNLGIAAALFD 171
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMV 256
+ R++ V+W+ +I+G A G A + F
Sbjct: 172 GRA--REDAVAWSAMITGCARRGDIGAARDLF---------------------------- 201
Query: 257 EECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFS 316
+EC V D+ + +I + G + A E+ +P + +VV W ++I+ Y
Sbjct: 202 DECPV-KDLVSWNVMITAYAKRGDMALARELFDQVPER--DVVSW-----NVMISGYVRC 253
Query: 317 PITLNSQRLF 326
L++ LF
Sbjct: 254 GSHLHALELF 263
>gi|297727555|ref|NP_001176141.1| Os10g0400250 [Oryza sativa Japonica Group]
gi|13940614|gb|AAK50416.1|AC021891_17 Putative selenium-binding protein-like [Oryza sativa Japonica
Group]
gi|31431939|gb|AAP53645.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125574711|gb|EAZ15995.1| hypothetical protein OsJ_31439 [Oryza sativa Japonica Group]
gi|255679385|dbj|BAH94869.1| Os10g0400250 [Oryza sativa Japonica Group]
Length = 651
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 150/315 (47%), Gaps = 37/315 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + C + LG +LH G V + AL DMY+ G L+ + +F
Sbjct: 227 DEVTMIAAVSGCGQMRDLELGRRLHGFVDSDGVSCTVRLMNALMDMYIKCGSLEMAKSVF 286
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
+ + R +V+W +I G K W ++ GY + + EAL+
Sbjct: 287 ERIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALS 346
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M P EIT++ +L A + G + +H Y EK F + + LID
Sbjct: 347 LFHEMQEASVV-PDEITMVNLLTACSQLGALEMGMWVHRYIEKHRL-VFSVALGTSLIDM 404
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG I A +F++ + KN ++WT +I G A HG EA+E+F M ++G KP+
Sbjct: 405 YAKCGNIEKAIHIFKE--IPEKNALTWTAMICGLANHGHANEAIEHFRTMIELGQKPDEI 462
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
IG +EG +FF M + + +KHY C+ID+L RAG L++AE++ +
Sbjct: 463 TFIGVLSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNT 522
Query: 291 IPSQITNVVVWRTGF 305
+P + + VVW F
Sbjct: 523 MPME-PDAVVWGAIF 536
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 127/253 (50%), Gaps = 28/253 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ FL++ C L G A ++G S V+V A G ++D+ +LF
Sbjct: 124 DHLTFPFLLKACARLREWGYGDAALAHVLRLGLDSDVFVVNAATHFLSIRGPMEDARRLF 183
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE-YTEPSEITILA 141
D P R+LV+WN +I GY R EAL LF RM A + P E+T++A
Sbjct: 184 DRSPVRDLVSWNT----------LIGGYVRRGNPAEALELFWRMVAEDAVVRPDEVTMIA 233
Query: 142 VLPAIWKNGEVRNCQL---IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
A+ G++R+ +L +HG+ + G + + + N L+D Y KCG + A +FE
Sbjct: 234 ---AVSGCGQMRDLELGRRLHGFVDSDGVSC-TVRLMNALMDMYIKCGSLEMAKSVFE-- 287
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-------EEGLKF 251
++ + +VSWTT+I GFA G+ +A + F+ M + + P + G +E L
Sbjct: 288 RIEHRTVVSWTTMIVGFAKFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKQCKEALSL 347
Query: 252 FDKMVEECEVLPD 264
F +M +E V+PD
Sbjct: 348 FHEM-QEASVVPD 359
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 94/222 (42%), Gaps = 20/222 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T L+ C L +G +H K V + T+L DMY G ++ + +F
Sbjct: 359 DEITMVNLLTACSQLGALEMGMWVHRYIEKHRLVFSVALGTSLIDMYAKCGNIEKAIHIF 418
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E+PE+N +TW +I GL + +NEA+ FR M +P EIT + V
Sbjct: 419 KEIPEKNALTWTAMICGL----------ANHGHANEAIEHFRTMIELG-QKPDEITFIGV 467
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G V+ + E + + +C+ID + G + A +L ++
Sbjct: 468 LSACCHAGLVKEGREFFSLMETKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPME- 526
Query: 203 KNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKPNRS 241
+ V W I M G +G++A M+ V + P+ S
Sbjct: 527 PDAVVWGAIFFACRMQGNISLGEKAA-----MKLVEIDPSDS 563
>gi|115459098|ref|NP_001053149.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|38344239|emb|CAD41332.2| OJ991113_30.16 [Oryza sativa Japonica Group]
gi|113564720|dbj|BAF15063.1| Os04g0488200 [Oryza sativa Japonica Group]
gi|125548801|gb|EAY94623.1| hypothetical protein OsI_16400 [Oryza sativa Indica Group]
Length = 598
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 155/292 (53%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T + ++ C L G +H + + + ++ V AL DMYV L + ++F
Sbjct: 215 NEVTLASVLVACGNLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVF 274
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D L R++V+W V+I+GLV+ R +EAL +F M +P ++ + V
Sbjct: 275 DMLLARDIVSWTVMISGLVQ----------CKRPSEALEVFNAMQ-ISGVKPDKVVLSTV 323
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + + + +H Y E++G +D+HV ++D Y KCGC+ +A +F++ +
Sbjct: 324 LSACASLGALESGRWVHEYIERKGIE-WDVHVGTSVVDMYVKCGCLDTAVSIFQEMPL-- 380
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN+ SW +I+GFA+HG G+EA++ F+RM GL PN I +EG +
Sbjct: 381 KNVSSWNALINGFALHGRGREALDCFDRMVASGLHPNEVTFITVLGACCHSGLVQEGRQL 440
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ M + ++ P HYGC++D+L RAG +++A +V +P + V W T
Sbjct: 441 FELMTKSYKLSPWEDHYGCMVDLLGRAGLIQEAYDVIKAMPMR-PGVFTWVT 491
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 139/302 (46%), Gaps = 35/302 (11%)
Query: 23 DSFTYSFLIRTCVTLSYP-NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D +T ++ C L G Q HAV K GF V V AL Y + G D+ K+
Sbjct: 116 DGYTLPAALKACARLGGGLREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKV 175
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FDE+ ER++V+ WT ++ ++R EAL + M P+E+T+ +
Sbjct: 176 FDEMAERDVVS----------WTALLSAFTRGGMFMEALGVLAEMD----VTPNEVTLAS 221
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL A G R + +HG+ +R ++ V N L+D Y KC + A ++F+ +
Sbjct: 222 VLVACGNLGTARAGKAVHGWYFRRE-KELNLIVGNALLDMYVKCEKLDLARRVFD--MLL 278
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---------SWRIGE-EGLKF 251
+++VSWT +ISG EA+E F MQ G+KP++ +G E ++
Sbjct: 279 ARDIVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRW 338
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLIN 311
+ +E + D+ ++D+ + G L+ A + +P + NV W LIN
Sbjct: 339 VHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMP--LKNVSSWNA-----LIN 391
Query: 312 SY 313
+
Sbjct: 392 GF 393
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 14/198 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D S ++ C +L G +H + G + V+V T++ DMYV G L + +F
Sbjct: 316 DKVVLSTVLSACASLGALESGRWVHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIF 375
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E+P +N+ +WN +I+G++ R EAL F RM A P+E+T + V
Sbjct: 376 QEMPLKNVSSWNA----------LINGFALHGRGREALDCFDRMVA-SGLHPNEVTFITV 424
Query: 143 LPAIWKNGEVRNC-QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A +G V+ QL + + ++ H C++D + G I A + + +
Sbjct: 425 LGACCHSGLVQEGRQLFELMTKSYKLSPWEDHY-GCMVDLLGRAGLIQEAYDVIKAMPM- 482
Query: 202 RKNLVSWTTIISGFAMHG 219
R + +W T++S HG
Sbjct: 483 RPGVFTWVTLLSACQAHG 500
>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
Length = 948
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 146/281 (51%), Gaps = 25/281 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DS TY L+ L LG +LH +K+GF S++ V+ L DMY G + DS K+F
Sbjct: 474 DSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVF 533
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + R+++TWN II V N L + RM E P T+L++
Sbjct: 534 ENMKARDIITWNTIIASCV----------HSEDCNLGLRMISRMRT-EGVTPDMATMLSI 582
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LP R + IHG K G + D+ V N LI+ Y+KCG + ++ ++F+ +
Sbjct: 583 LPVCSLLAAKRQGKEIHGCIFKLGLES-DVPVGNVLIEMYSKCGSLRNSFQVFK--LMKT 639
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
K++V+WT +IS M+G GK+AV F M+ G+ P+ + EEGL +
Sbjct: 640 KDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNY 699
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
F +M ++ ++ P I+HY C++D+L R+ L++AE+ +P
Sbjct: 700 FHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMP 740
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/314 (27%), Positives = 143/314 (45%), Gaps = 32/314 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++T+ +I C L + +H +GF S +Y+ AL DMY L + K+F
Sbjct: 173 DTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVF 232
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+P R++V+WN +I+ GY+ NEAL ++ R P T+ +V
Sbjct: 233 EEMPLRDVVSWNSLIS----------GYNANGYWNEALEIYYRFRNLGVV-PDSYTMSSV 281
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G V +IHG EK G D+ V+N L+ Y K + ++F+ +
Sbjct: 282 LRACGGLGSVEEGDIIHGLIEKIGIKK-DVIVNNGLLSMYCKFNGLIDGRRIFDKMVL-- 338
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR------SWRIGEEGLKFFDKMV 256
++ VSW T+I G++ G+ +E+++ F M KP+ G G F K V
Sbjct: 339 RDAVSWNTMICGYSQVGLYEESIKLFMEMVN-QFKPDLLTITSILQACGHLGDLEFGKYV 397
Query: 257 EECEVLP----DIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINS 312
+ + D LI++ + G L ++EV SG+ + + V W + +IN
Sbjct: 398 HDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCK--DSVSWNS-----MINV 450
Query: 313 YFFSPITLNSQRLF 326
Y + + +LF
Sbjct: 451 YIQNGSFDEAMKLF 464
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 112/237 (47%), Gaps = 17/237 (7%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
+Y++ ++++ + P D T + +++ C L G +H G++ +
Sbjct: 356 LYEESIKLFMEMVNQFKP--DLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTAS 413
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
L +MY G L S ++F + ++ V+WN +I+ Y + +EA+ L
Sbjct: 414 NILINMYAKCGNLLASQEVFSGMKCKDSVSWN----------SMINVYIQNGSFDEAMKL 463
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
F+ M +P +T + +L + G++ + +H K GFN+ +I VSN L+D Y
Sbjct: 464 FKMMKT--DVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNS-NIVVSNTLVDMY 520
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
AKCG + + K+FE+ +++++W TII+ + RM+ G+ P+
Sbjct: 521 AKCGEMGDSLKVFENMKA--RDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPD 575
>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
Length = 1020
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 163/310 (52%), Gaps = 34/310 (10%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
V++ +QQ + L P + TY+ ++ C + + + G ++H + G + +V
Sbjct: 534 VFQDMQQ------AGLKP--NRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVA 585
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
L +MY G +KD+ ++FD + +R++V +N +I GY+ N EAL L
Sbjct: 586 NTLVNMYSMCGSVKDARQVFDRMTQRDIVAYN----------AMIGGYAAHNLGKEALKL 635
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
F R+ E +P ++T + +L A +G + + IH K G+ + D + N L+ TY
Sbjct: 636 FDRLQE-EGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLS-DTSLGNALVSTY 693
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN--- 239
AKCG A +F+ + ++N++SW II G A HG G++ ++ FERM+ G+KP+
Sbjct: 694 AKCGSFSDALLVFD--KMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVT 751
Query: 240 --------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
+ EEG ++F M + + P I+HYGC++D+L RAG+L++ E + +
Sbjct: 752 FVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTM 811
Query: 292 PSQITNVVVW 301
P Q N +W
Sbjct: 812 PFQ-ANTRIW 820
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 103/201 (51%), Gaps = 20/201 (9%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G +H+ G +S + V TAL MY G KD ++F++L R+L+ WN +I GL +
Sbjct: 364 GKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAE 423
Query: 103 ---WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
W + Y +M R E P++IT + +L A + + IH
Sbjct: 424 GGNWEEASEIYHQMQR--------------EGMMPNKITYVILLNACVNPTALHWGREIH 469
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
K GF FDI V N LI YA+CG I A LF + RK+++SWT +I G A G
Sbjct: 470 SRVVKDGF-MFDISVQNALISMYARCGSIKDARLLF--NKMVRKDIISWTAMIGGLAKSG 526
Query: 220 MGKEAVENFERMQKVGLKPNR 240
+G EA+ F+ MQ+ GLKPNR
Sbjct: 527 LGAEALAVFQDMQQAGLKPNR 547
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 130/237 (54%), Gaps = 15/237 (6%)
Query: 4 YKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNT 63
+++ +IY H + + TY L+ CV + + G ++H+ K GF + V
Sbjct: 427 WEEASEIY-HQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQN 485
Query: 64 ALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALF 123
AL MY G +KD+ LF+++ +++++W +I GL K +G+ EALA+F
Sbjct: 486 ALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAK-SGL---------GAEALAVF 535
Query: 124 RRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183
+ M +P+ +T ++L A + + IH + G A D HV+N L++ Y+
Sbjct: 536 QDMQQAGL-KPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGL-ATDAHVANTLVNMYS 593
Query: 184 KCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
CG + A ++F+ + ++++V++ +I G+A H +GKEA++ F+R+Q+ GLKP++
Sbjct: 594 MCGSVKDARQVFDRMT--QRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDK 648
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 114/220 (51%), Gaps = 16/220 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S Y +++ C+ + G ++H + Y AL +MY+ G ++++ +++
Sbjct: 140 NSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVW 199
Query: 83 DEL--PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
++L ER + +WN ++ G V++ G I+ EAL L R M T +
Sbjct: 200 NKLNHTERTVHSWNAMVVGYVQY-GYIE---------EALKLLREMQQ-HGLALGRATTM 248
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+L + + + IH K FD++V+NC+++ YAKCG I A ++F+ +
Sbjct: 249 RLLSSCKSPSALECGREIHVEAMKARL-LFDVNVANCILNMYAKCGSIHEAREVFD--KM 305
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+ K++VSWT II G+A G + A E F++MQ+ G+ PNR
Sbjct: 306 ETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNR 345
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 83/202 (41%), Gaps = 22/202 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D TY ++ C ++H++ K G+ S + AL Y G D+ +F
Sbjct: 647 DKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVF 706
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++ +RN+++WN II G ++ R + L LF RM E +P +T +++
Sbjct: 707 DKMMKRNVISWNAIIGGC----------AQHGRGQDVLQLFERMKM-EGIKPDIVTFVSL 755
Query: 143 LPA-----IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
L A + + G C + +G + C++D + G + L +
Sbjct: 756 LSACSHAGLLEEGRRYFCSMSRDFGITPTIEHY-----GCMVDLLGRAGQLDEVEALIK- 809
Query: 198 TSVDRKNLVSWTTIISGFAMHG 219
T + N W ++ +HG
Sbjct: 810 TMPFQANTRIWGALLGACRIHG 831
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 68/143 (47%), Gaps = 14/143 (9%)
Query: 170 FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFE 229
D + N LI+ Y +CG I A +++ + + + SW ++ G+ +G +EA++
Sbjct: 174 LDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLR 233
Query: 230 RMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERA 278
MQ+ GL R+ + E G + + + + +L D+ C++++ +
Sbjct: 234 EMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAM-KARLLFDVNVANCILNMYAKC 292
Query: 279 GRLEQAEEVASGIPSQITNVVVW 301
G + +A EV + ++ +VV W
Sbjct: 293 GSIHEAREVFDKMETK--SVVSW 313
>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
Length = 710
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/319 (31%), Positives = 158/319 (49%), Gaps = 42/319 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHA-VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D T + ++ C TL+ G Q+HA V F++ + + AL DMY G + ++ +
Sbjct: 256 DEVTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCV 315
Query: 82 FDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEAL 120
FD +P RN V+ +++G +V W +I GY++ + EAL
Sbjct: 316 FDRMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEAL 375
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF-----NAFDIHVS 175
LFR M E P+ T +L A ++ + H + K GF DI V
Sbjct: 376 GLFR-MLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVG 434
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
N LID Y KCG + ++FE+ K+ VSW T+I G+A +G G EA+E F++M + G
Sbjct: 435 NSLIDMYMKCGSVEEGLRVFENMV--EKDHVSWNTMIIGYAQNGYGMEALELFQKMLESG 492
Query: 236 LKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
KP+ IG EEG ++F M +E +LP HY C++D+L RAG LE+A
Sbjct: 493 EKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEA 552
Query: 285 EEVASGIPSQITNVVVWRT 303
+++ +P Q + VVW +
Sbjct: 553 KDLIESMPKQ-PDAVVWSS 570
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/302 (25%), Positives = 146/302 (48%), Gaps = 36/302 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DS ++ L+ CV L +H + F V++ L D+Y G+L + K+F
Sbjct: 23 DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
D + ERN+ ++N II+ L++ W +I G+++ +R EAL
Sbjct: 83 DRMSERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALD 142
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
F RM ++ ++ + + L A + +++ IHG K + + D+ + + LID
Sbjct: 143 WFVRMHRDDFV-LNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKY-SLDVFMGSGLIDF 200
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR- 240
Y+KCG + A ++F+ ++ KN+VSW +I+ + +G EA+E F RM ++G KP+
Sbjct: 201 YSKCGLVGCARRVFD--GMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEV 258
Query: 241 ----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+ +EG++ ++V+ + D+ L+D+ + GR+ +A V
Sbjct: 259 TLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDR 318
Query: 291 IP 292
+P
Sbjct: 319 MP 320
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 126/281 (44%), Gaps = 27/281 (9%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
+ + +++ + C L LG Q+H + SK + V++ + L D Y G + + +
Sbjct: 153 VLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARR 212
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD + E+N+V+WN +IT Y + + EAL F RM + +P E+T+
Sbjct: 213 VFDGMEEKNVVSWNCLIT----------CYEQNGPAIEALEAFGRMTELGF-KPDEVTLA 261
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+V+ A + IH K D+ + N L+D YAKCG + A +F+ V
Sbjct: 262 SVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPV 321
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI----------GEEGLK 250
+N VS TT++SG+A K A F +++ K SW EE L
Sbjct: 322 --RNAVSETTMVSGYAKSASVKAARSMFATIKQ---KDIVSWNALIAGYTQNGENEEALG 376
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
F +M++ V P +G L++ LE + S +
Sbjct: 377 LF-RMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHV 416
>gi|115440653|ref|NP_001044606.1| Os01g0814300 [Oryza sativa Japonica Group]
gi|20161481|dbj|BAB90405.1| selenium-binding protein-like [Oryza sativa Japonica Group]
gi|56785052|dbj|BAD82691.1| PPR repeat containing protein-like [Oryza sativa Japonica Group]
gi|113534137|dbj|BAF06520.1| Os01g0814300 [Oryza sativa Japonica Group]
Length = 604
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 177/338 (52%), Gaps = 38/338 (11%)
Query: 2 LVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYV 61
LVY+++ + + SPLP +SFT +F ++ C + G QLH+ + G + YV
Sbjct: 116 LVYRRM----LRAGSPLP---NSFTLAFALKACSVVPALGEGRQLHSQAFRRGLEPSPYV 168
Query: 62 NTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALA 121
T L ++Y + + +FD + V L W+ +I GYSR+ NEAL
Sbjct: 169 QTGLLNLYAKCEEVALARTVFDGM---------VGDKNLAAWSAMIGGYSRVGMVNEALG 219
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LFR M A + P E+T+++V+ A K G + + +H + +++G D+ +S LID
Sbjct: 220 LFREMQAAD-VNPDEVTMVSVISACAKAGALDLGRWVHAFIDRKGIT-VDLELSTALIDM 277
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG I A +F+ ++ ++ +W+ +I G A+HG+ + A++ F RM ++ ++PN
Sbjct: 278 YAKCGLIERAKGVFD--AMAERDTKAWSAMIVGLAIHGLVEVALKLFSRMLELKVRPNNV 335
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
IG EG +++ M +E + P +++YGC++D+ R+ L++A +G
Sbjct: 336 TFIGVLSACAHSGLVNEGRRYWSTM-QELGIKPSMENYGCMVDLFCRSSLLDEAYSFVTG 394
Query: 291 --IPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLF 326
IP N V+WRT L NS F + S++L
Sbjct: 395 MAIP---PNSVIWRT-LLVASKNSNRFDIVQSASKKLL 428
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 113/264 (42%), Gaps = 33/264 (12%)
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
+ LFD++PE +N +I L + + + + ++RRM P+
Sbjct: 80 ARNLFDQIPEPTAFCYNSLIRALSS-------AAGAAPAADTVLVYRRMLRAGSPLPNSF 132
Query: 138 TI------LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191
T+ +V+PA+ GE R +H +RG +V L++ YAKC + A
Sbjct: 133 TLAFALKACSVVPAL---GEGRQ---LHSQAFRRGLEP-SPYVQTGLLNLYAKCEEVALA 185
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---------SW 242
+F D V KNL +W+ +I G++ GM EA+ F MQ + P+
Sbjct: 186 RTVF-DGMVGDKNLAAWSAMIGGYSRVGMVNEALGLFREMQAADVNPDEVTMVSVISACA 244
Query: 243 RIGEEGL-KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ G L ++ ++ + D++ LID+ + G +E+A+ V + + T W
Sbjct: 245 KAGALDLGRWVHAFIDRKGITVDLELSTALIDMYAKCGLIERAKGVFDAMAERDTK--AW 302
Query: 302 RTGFLRLLINSYFFSPITLNSQRL 325
+ L I+ + L S+ L
Sbjct: 303 SAMIVGLAIHGLVEVALKLFSRML 326
>gi|220061995|gb|ACL79585.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
Length = 589
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 157/301 (52%), Gaps = 35/301 (11%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P D+ + SF ++ S + QLHA+ ++G + V + T L D Y G L +
Sbjct: 109 PRPDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASAR 168
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC-----EYTEP 134
K+FDE+ R++ TWN ++ GL + T N ALALF R+A EP
Sbjct: 169 KVFDEMTVRDVATWNSLLAGLAQGT----------EPNLALALFHRLANSFQELPSREEP 218
Query: 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
+E+TI+AVL A + G +++ +H + +K G + ++ V N LID Y+KCG + A +
Sbjct: 219 NEVTIVAVLSACAQIGLLKDGMYVHEFAKKFGLDR-NVRVCNSLIDMYSKCGSLSRALDV 277
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP------------NRSW 242
F + + LVS+ I +MHG G +A+ F+ M ++P N S
Sbjct: 278 FHSIKPEDRTLVSYNAAIQAHSMHGHGGDALRLFDEM-PTRIEPDGVTYLAVLCGCNHSG 336
Query: 243 RIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
+ ++GL+ F+ M V P++KHYG ++D+L RAGRL +A + +P ++V+W+
Sbjct: 337 LV-DDGLRVFNSM----RVAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFP-ADIVLWQ 390
Query: 303 T 303
T
Sbjct: 391 T 391
Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 88/222 (39%), Gaps = 33/222 (14%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T ++ C + G +H K G +V V +L DMY G L + +F
Sbjct: 219 NEVTIVAVLSACAQIGLLKDGMYVHEFAKKFGLDRNVRVCNSLIDMYSKCGSLSRALDVF 278
Query: 83 DEL-PE-RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+ PE R LV++N I +S +AL LF M EP +T L
Sbjct: 279 HSIKPEDRTLVSYN----------AAIQAHSMHGHGGDALRLFDEMPT--RIEPDGVTYL 326
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS----NCLIDTYAKCGCIFSASKLFE 196
AVL +G V + R FN+ + + ++D + G + A
Sbjct: 327 AVLCGCNHSGLVDDGL--------RVFNSMRVAPNMKHYGTIVDLLGRAGRLTEAY---- 374
Query: 197 DTSVDR---KNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
DT + ++V W T++ MHG+ + A ++ ++G
Sbjct: 375 DTVISMPFPADIVLWQTLLGAAKMHGVVELAELAANKLAELG 416
>gi|225456713|ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 618
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 162/292 (55%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T + ++ C L +G ++ + S++ V+TA+ +MYV G + D +F
Sbjct: 227 NEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVF 286
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + R++VT W+ +I GY++ RSNEAL LF M + + +P+++T+++V
Sbjct: 287 DHMARRDVVT----------WSAMIAGYAQNGRSNEALELFENMKSAQ-IKPNDVTLVSV 335
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + G V + I Y E RG + +++V++ L+ Y+KCG I A ++F+ + +
Sbjct: 336 LSACAQLGSVETGERIGSYVESRGLIS-NVYVASALLGMYSKCGNIIKARQIFD--KLPQ 392
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
++ V+W ++I G A++G ++A+ + RM+++ +KPN +G E GL+F
Sbjct: 393 RDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLMTACTHAGHVELGLEF 452
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F M + + P+I+H+ C++D+ R+GRL A E + + NVV+W T
Sbjct: 453 FRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVE-PNVVIWGT 503
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/335 (22%), Positives = 154/335 (45%), Gaps = 48/335 (14%)
Query: 18 LPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD 77
+PP+F ++C +L ++G Q+H++ + GF S V+ AL + Y + L
Sbjct: 99 IPPIF---------KSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGS 149
Query: 78 SSKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRS 116
+ +FD + ++ + +N +I+ +V W +I Y++
Sbjct: 150 AELIFDGILVKDTIAYNCLISAYSRSGEVLAARELFDKMRDRSIVSWNAMISCYAQNGDY 209
Query: 117 NEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN 176
++ +F+RM E EP+EIT+ VL K G++ I + + + ++ VS
Sbjct: 210 HKGWIIFQRMQD-EMCEPNEITLATVLSICAKLGDLEMGLRIKKLNDNKNLGS-NMIVST 267
Query: 177 CLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
+++ Y KCG + +F+ + R+++V+W+ +I+G+A +G EA+E FE M+ +
Sbjct: 268 AMLEMYVKCGAVDDGRLVFDHMA--RRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQI 325
Query: 237 KPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAE 285
KPN + E G + VE ++ ++ L+ + + G + +A
Sbjct: 326 KPNDVTLVSVLSACAQLGSVETGER-IGSYVESRGLISNVYVASALLGMYSKCGNIIKAR 384
Query: 286 EVASGIPSQITNVVVWRTGFLRLLINSYFFSPITL 320
++ +P + + V W + + L IN + I L
Sbjct: 385 QIFDKLPQR--DNVTWNSMIMGLAINGFAEDAIAL 417
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 93/197 (47%), Gaps = 14/197 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T ++ C L G ++ + G S+VYV +AL MY G + + ++F
Sbjct: 328 NDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIF 387
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D+LP+R+ VTWN +I GL I+G++ +A+AL+ RM E +P+ IT + +
Sbjct: 388 DKLPQRDNVTWNSMIMGLA-----INGFAE-----DAIALYNRMKEIE-VKPNNITFVGL 436
Query: 143 LPAIWKNGEVR-NCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+ A G V + + H + C++D + + G + A + V+
Sbjct: 437 MTACTHAGHVELGLEFFRSMRSDHNISPNIEHFA-CIVDLFCRSGRLIDAYEFICRMEVE 495
Query: 202 RKNLVSWTTIISGFAMH 218
N+V W T++S +H
Sbjct: 496 -PNVVIWGTLLSASRIH 511
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 84/196 (42%), Gaps = 43/196 (21%)
Query: 74 FLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM------A 127
F++ + ++FD++P + IT YSR++ +NEAL F M
Sbjct: 45 FIQYARQVFDQIPHPDQGVHCSFITA----------YSRLSLNNEALRTFVSMHQNNVRI 94
Query: 128 ACEYTEPSEITILAVLPAIWKNGEVRN------------CQ--LIHGYGEKR-------- 165
C +T P A L AI +V + CQ LI+ Y +
Sbjct: 95 VC-FTIPPIFKSCASLLAIDVGKQVHSLVIRYGFHSSVFCQNALINFYAKINDLGSAELI 153
Query: 166 --GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKE 223
G D NCLI Y++ G + +A +LF D DR ++VSW +IS +A +G +
Sbjct: 154 FDGILVKDTIAYNCLISAYSRSGEVLAARELF-DKMRDR-SIVSWNAMISCYAQNGDYHK 211
Query: 224 AVENFERMQKVGLKPN 239
F+RMQ +PN
Sbjct: 212 GWIIFQRMQDEMCEPN 227
>gi|108706388|gb|ABF94183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 823
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/345 (29%), Positives = 165/345 (47%), Gaps = 68/345 (19%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS--- 79
D T+ F++R C + + G Q+HA K G +S +V AL M+ S G L ++
Sbjct: 81 DKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCESDAFVKNALIGMHASCGNLGIAAALF 140
Query: 80 ----------------------------KLFDELPERNLVTWNVIITG------------ 99
LFDE P ++LV+WNV+IT
Sbjct: 141 DGRAREDAVAWSAMITGCARRGDIGAARDLFDECPVKDLVSWNVMITAYAKRGDMALARE 200
Query: 100 ---------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
+V W +I GY R AL LF +M +P +T+L++L A +G
Sbjct: 201 LFDQVPERDVVSWNVMISGYVRCGSHLHALELFEQMQRMG-EKPDIVTMLSLLSACADSG 259
Query: 151 EVRNCQLIHG-YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWT 209
++ Q +H + N F + + N LID YAKCG + SA ++F S+ K++ +W
Sbjct: 260 DLDVGQRLHSSLSDMFSRNGFPVVLGNALIDMYAKCGSMKSAHEVF--WSMRDKDVSTWN 317
Query: 210 TIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEE 258
+I+ G A+HG E+++ FE+M K ++P+ + ++G +FF+ M +
Sbjct: 318 SIVGGLALHGHVLESIDMFEKMLKGKVRPDEITFVAVLIACSHGGMVDKGREFFNLMQHK 377
Query: 259 CEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
V P+IKHYGC++D+L RAG L++A E + + N V+WRT
Sbjct: 378 YRVEPNIKHYGCMVDMLGRAGLLKEAFEFIDTMKCE-PNSVIWRT 421
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 92/201 (45%), Gaps = 18/201 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHA----VFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
D T L+ C ++G +LH+ +FS+ GF V + AL DMY G +K +
Sbjct: 244 DIVTMLSLLSACADSGDLDVGQRLHSSLSDMFSRNGFP--VVLGNALIDMYAKCGSMKSA 301
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
++F + ++++ TWN I+ GL ++ E++ +F +M + P EIT
Sbjct: 302 HEVFWSMRDKDVSTWNSIVGGLALHGHVL----------ESIDMFEKMLKGK-VRPDEIT 350
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+AVL A G V + + + +I C++D + G + A + F DT
Sbjct: 351 FVAVLIACSHGGMVDKGREFFNLMQHKYRVEPNIKHYGCMVDMLGRAGLLKEAFE-FIDT 409
Query: 199 SVDRKNLVSWTTIISGFAMHG 219
N V W T++S +HG
Sbjct: 410 MKCEPNSVIWRTLLSACRVHG 430
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 101/259 (38%), Gaps = 60/259 (23%)
Query: 55 FQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMN 114
F S V V A+ Y+ +FD++P + +N +I G D
Sbjct: 18 FASAVAVRGAIAHAYL----------VFDQIPRPDRFMYNTLIRGAAHTAAPRD------ 61
Query: 115 RSNEALALFRRM---AACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD 171
A++L+ RM P ++T VL A G +H + K G + D
Sbjct: 62 ----AVSLYTRMLRRGGGGGVRPDKLTFPFVLRACTAMGAGDTGVQVHAHVVKAGCES-D 116
Query: 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
V N LI +A CG + A+ LF+ + R++ V+W+ +I+G A G A + F
Sbjct: 117 AFVKNALIGMHASCGNLGIAAALFDGRA--REDAVAWSAMITGCARRGDIGAARDLF--- 171
Query: 232 QKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
+EC V D+ + +I + G + A E+ +
Sbjct: 172 -------------------------DECPV-KDLVSWNVMITAYAKRGDMALARELFDQV 205
Query: 292 PSQITNVVVWR---TGFLR 307
P + +VV W +G++R
Sbjct: 206 PER--DVVSWNVMISGYVR 222
>gi|242035545|ref|XP_002465167.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
gi|241919021|gb|EER92165.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
Length = 564
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 136/254 (53%), Gaps = 25/254 (9%)
Query: 59 VYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNE 118
+ A+ DMY L + + +FD LP+R++V+WN +ITG Y + SNE
Sbjct: 305 IIAGNAVVDMYAKLSKIDAAQMVFDNLPDRDVVSWNTLITG----------YMQNGLSNE 354
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
A+ ++ M E +P + T +++LPA G ++ +H K G N D++VS CL
Sbjct: 355 AVRIYNDMQNHEGLKPIQGTFVSILPAYSNLGALQQGMRMHALSIKTGLN-LDVYVSTCL 413
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
ID YAKCG + A LFE + R++ W II+G +HG G +A+ F +MQ+ G+KP
Sbjct: 414 IDLYAKCGKLVEAMLLFE--HMPRRSTGPWNAIIAGLGVHGHGAKALNLFSQMQQEGIKP 471
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ + ++G FFD M ++P KHY C++D+L RAG+L++A E
Sbjct: 472 DNVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYACMVDMLGRAGQLDEAFEF 531
Query: 288 ASGIPSQITNVVVW 301
G+P + + VW
Sbjct: 532 IQGMPIK-PDSAVW 544
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 150/313 (47%), Gaps = 28/313 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ T S ++ CV L L +H K G ++V AL D+Y LG L ++ +F
Sbjct: 167 DAVTLSSVLPMCVLLGDRALALVMHVYAVKRGLSGELFVCNALIDVYGKLGMLVEARWVF 226
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ R+LVTWN II+ Y + + A+ LF M + P +T++++
Sbjct: 227 GGMALRDLVTWNSIIS----------AYEQGGKVAAAVELFHGMMKSGVS-PDVLTLVSL 275
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
A+ + G+ R + +H Y +RG++ DI N ++D YAK I +A +F++ +
Sbjct: 276 ASAVAQCGDERGAKSVHCYVRRRGWDVGDIIAGNAVVDMYAKLSKIDAAQMVFDN--LPD 333
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQK-VGLKPNRSWRIG-----------EEGLK 250
+++VSW T+I+G+ +G+ EAV + MQ GLKP + + ++G++
Sbjct: 334 RDVVSWNTLITGYMQNGLSNEAVRIYNDMQNHEGLKPIQGTFVSILPAYSNLGALQQGMR 393
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLI 310
++ L D+ CLID+ + G+L +A + +P + T W L +
Sbjct: 394 MHALSIKTGLNL-DVYVSTCLIDLYAKCGKLVEAMLLFEHMPRRSTG--PWNAIIAGLGV 450
Query: 311 NSYFFSPITLNSQ 323
+ + + L SQ
Sbjct: 451 HGHGAKALNLFSQ 463
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/323 (28%), Positives = 156/323 (48%), Gaps = 40/323 (12%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFL 75
PL P DSFT+ L+R P Q HA ++G +V+ + +L Y+ G +
Sbjct: 64 PLRP--DSFTFPPLVRAA---PGPASAAQFHACALRLGLLHPNVFASGSLVHAYLRFGRV 118
Query: 76 KDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS 135
++ ++FDE+PER++ WN +++GL R R+ +A+ALF RM E
Sbjct: 119 AEAYRVFDEMPERDVPAWNAMLSGL----------CRNARAVDAVALFGRMVG-EGVAGD 167
Query: 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
+T+ +VLP G+ ++H Y KRG + ++ V N LID Y K G + A +F
Sbjct: 168 AVTLSSVLPMCVLLGDRALALVMHVYAVKRGLSG-ELFVCNALIDVYGKLGMLVEARWVF 226
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN------RSWRIGEEGL 249
++ ++LV+W +IIS + G AVE F M K G+ P+ + + + G
Sbjct: 227 GGMAL--RDLVTWNSIISAYEQGGKVAAAVELFHGMMKSGVSPDVLTLVSLASAVAQCGD 284
Query: 250 KFFDKMVEECEV------LPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ K V C V + DI ++D+ + +++ A+ V +P + +VV W T
Sbjct: 285 ERGAKSV-HCYVRRRGWDVGDIIAGNAVVDMYAKLSKIDAAQMVFDNLPDR--DVVSWNT 341
Query: 304 GFLRLLINSYFFSPITLNSQRLF 326
LI Y + ++ + R++
Sbjct: 342 -----LITGYMQNGLSNEAVRIY 359
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 92/224 (41%), Gaps = 46/224 (20%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGT-----QLHAVFSKVGFQSHVYVNTALG 66
+ +H L P+ +F + +Y NLG ++HA+ K G VYV+T L
Sbjct: 362 MQNHEGLKPIQGTFV-------SILPAYSNLGALQQGMRMHALSIKTGLNLDVYVSTCLI 414
Query: 67 DMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM 126
D+Y G L ++ LF+ +P R+ WN II GL +AL LF +M
Sbjct: 415 DLYAKCGKLVEAMLLFEHMPRRSTGPWNAIIAGL----------GVHGHGAKALNLFSQM 464
Query: 127 AACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS----------- 175
E +P +T +++L A G V +G + FD+ +
Sbjct: 465 QQ-EGIKPDNVTFVSLLAACSHAGLV-----------DQGRSFFDLMQTVYGIVPIAKHY 512
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
C++D + G + A + + + + V W ++ +HG
Sbjct: 513 ACMVDMLGRAGQLDEAFEFIQGMPIKPDSAV-WGALLGACRIHG 555
>gi|147797709|emb|CAN61058.1| hypothetical protein VITISV_011618 [Vitis vinifera]
Length = 529
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 99/311 (31%), Positives = 160/311 (51%), Gaps = 27/311 (8%)
Query: 4 YKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNT 63
YK + Y S + P + T ++ C +L G +H +K + V+V+
Sbjct: 162 YKVREVSYDMVSSNVKP--NGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEXDVFVHN 219
Query: 64 ALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALF 123
AL D+Y G ++D+ ++F +P RN+V+ WT +I+GYS N NEAL F
Sbjct: 220 ALIDVYSKCGSIRDAVQVFQLMPMRNVVS----------WTSLINGYSDNNCPNEALGFF 269
Query: 124 RRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183
++M A E P EIT+L V+ K + I Y K G ++N L+D +A
Sbjct: 270 KQMEA-ENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKTGLVKESPAIANVLMDMHA 328
Query: 184 KCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN---- 239
KCG I A ++F+ ++ K +VSWT +I G AM+G G A+ F +MQ+ G KP+
Sbjct: 329 KCGNIKRACQIFD--GMEEKTIVSWTIMIQGLAMYGHGLSALVRFCQMQREGFKPDSLVF 386
Query: 240 -------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+ +EG + F M + + P ++HYGC++DIL RAG +++A + +P
Sbjct: 387 LSLLSACSHAGLVDEGWRCFSSMEADYHIXPWMEHYGCMVDILCRAGLVDEAFKFVQNMP 446
Query: 293 SQITNVVVWRT 303
+ +++VWRT
Sbjct: 447 IK-PDMIVWRT 456
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 165/348 (47%), Gaps = 40/348 (11%)
Query: 8 QQIYIHSHSPLPPL-FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALG 66
+ I I++H L D++T F+I+ C G Q+H K+GF+ V + TAL
Sbjct: 62 EAILIYNHVRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTALL 121
Query: 67 DMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM 126
MY ++FDE+P+R+LV WN +I Y+ N + + M
Sbjct: 122 SMYGLFDEDCGLQQIFDEMPQRDLVMWNALIA----------AYAHGNCPYKVREVSYDM 171
Query: 127 AACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG 186
+ +P+ +T +++L +R + +HGY K D+ V N LID Y+KCG
Sbjct: 172 VSSN-VKPNGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEX-DVFVHNALIDVYSKCG 229
Query: 187 CIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN------- 239
I A ++F+ + +N+VSWT++I+G++ + EA+ F++M+ ++P+
Sbjct: 230 SIRDAVQVFQLMPM--RNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGV 287
Query: 240 -------RSWRIGEEGLKFFDK--MVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
RS+ +GE ++ K +V+E + ++ L+D+ + G +++A ++ G
Sbjct: 288 VCMCSKLRSFELGEWISQYVVKTGLVKESPAIANV-----LMDMHAKCGNIKRACQIFDG 342
Query: 291 IPSQITNVVVWRTGFLRLLINSYFFSPIT--LNSQRLFFFPAALYALT 336
+ + +V W L + + S + QR F P +L L+
Sbjct: 343 MEEK--TIVSWTIMIQGLAMYGHGLSALVRFCQMQREGFKPDSLVFLS 388
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 94/226 (41%), Gaps = 31/226 (13%)
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
W II GY N EA+ ++ + + + T++ V+ A + + IHG
Sbjct: 47 WNTIIRGYLEGNDPEEAILIYNHVRK-KGLKVDTYTLVFVIKACGLRPVILEGEQIHGQI 105
Query: 163 EKRGFNAFDIHVSNCLIDTYA----KCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218
K GF F++ + L+ Y CG ++F++ + +++LV W +I+ +A
Sbjct: 106 FKLGFE-FEVIIQTALLSMYGLFDEDCG----LQQIFDE--MPQRDLVMWNALIAAYAHG 158
Query: 219 GMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKFFDKMVEECEVLPDIKH 267
+ E M +KPN S R EG K V + + D+
Sbjct: 159 NCPYKVREVSYDMVSSNVKPNGVTAVSILSVCSSLRALREG-KAVHGYVTKNLIEXDVFV 217
Query: 268 YGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSY 313
+ LID+ + G + A +V +P + NVV W + LIN Y
Sbjct: 218 HNALIDVYSKCGSIRDAVQVFQLMP--MRNVVSWTS-----LINGY 256
>gi|356567054|ref|XP_003551738.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g15300-like [Glycine max]
Length = 518
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 102/345 (29%), Positives = 166/345 (48%), Gaps = 69/345 (20%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTAL-------GDMYVSLGFL 75
D+FT+ F+++ C L + N G+ +H ++GF S+V V L GD+ V+
Sbjct: 106 DNFTFPFVLKACTKLFWVNTGSAVHGRVLRLGFGSNVVVRNTLLVFHAKCGDLKVATDIF 165
Query: 76 KDSS------------------------KLFDELPERNLVTWNVIIT------------- 98
DS KLFDE+P+R+LV+WNV+IT
Sbjct: 166 DDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEMPKRDLVSWNVMITVYTKHGEMESARR 225
Query: 99 --------GLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE-PSEITILAVLPAIWKN 149
+V W +I GY N + EAL LF M C E P E+T+L++L A
Sbjct: 226 LFDEAPMKDIVSWNALIGGYVLRNLNREALELFDEM--CGVGECPDEVTMLSLLSACADL 283
Query: 150 GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWT 209
G++ + + +H + + N L+D YAKCG I A ++F + K++VSW
Sbjct: 284 GDLESGEKVHAKIIEMNKGKLSTLLGNALVDMYAKCGNIGKAVRVF--WLIRDKDVVSWN 341
Query: 210 TIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEE 258
++ISG A HG +E++ F M+ + P+ +G +EG ++F M +
Sbjct: 342 SVISGLAFHGHAEESLGLFREMKMTKVCPDEVTFVGVLAACSHAGNVDEGNRYFHLMKNK 401
Query: 259 CEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++ P I+H GC++D+L RAG L++A + + + N +VWR+
Sbjct: 402 YKIEPTIRHCGCVVDMLGRAGLLKEAFNFIASMKIE-PNAIVWRS 445
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 127/296 (42%), Gaps = 60/296 (20%)
Query: 41 NLGT--QLHAVF------SKVGFQSHVYVNTALGDM--YVSLGFLKDSSKLFDELPERNL 90
N+GT Q+HA+ S VGF + + TA+ + + ++ + ++F ++P+ +
Sbjct: 13 NVGTLKQIHALMIVNGLTSNVGFLRKLVLTTAMSMVGPNATSAVIRYALQMFAQIPQPDT 72
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
WN I G S+ + A+AL+ +M +P T VL A K
Sbjct: 73 FMWNTYIR----------GSSQSHDPVHAVALYAQMDQ-RSVKPDNFTFPFVLKACTKLF 121
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
V +HG + GF + ++ V N L+ +AKCG + A+ +F+D+ D+ ++V+W+
Sbjct: 122 WVNTGSAVHGRVLRLGFGS-NVVVRNTLLVFHAKCGDLKVATDIFDDS--DKGDVVAWSA 178
Query: 211 IISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGC 270
+I+G+A G L R K FD+M + D+ +
Sbjct: 179 LIAGYAQRG---------------DLSVAR---------KLFDEMPKR-----DLVSWNV 209
Query: 271 LIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLF 326
+I + + G +E A + P + ++V W LI Y + + LF
Sbjct: 210 MITVYTKHGEMESARRLFDEAP--MKDIVSWNA-----LIGGYVLRNLNREALELF 258
>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
Group]
gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
Length = 658
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 141/261 (54%), Gaps = 26/261 (9%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G +H + G + + V AL +MYV G+++++ +FD + +++ ++WN +I
Sbjct: 205 GKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLI----- 259
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
GYSR N +NEA LF M P+ +T+ +LPA + + +H Y
Sbjct: 260 -----GGYSRSNLANEAFTLFNEMLL--QLRPNAVTMACILPAAASLSSLERGREMHAYA 312
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
+RG+ D V+N L+D Y KCG + A +LF+ + KNL+SWT +I+G+ MHG G+
Sbjct: 313 VRRGY-LEDNFVANALVDMYVKCGALLLARRLFD--MLTNKNLISWTIMIAGYGMHGRGR 369
Query: 223 EAVENFERMQKVGLKPNRS-----------WRIGEEGLKFFDKMVEECEVLPDIKHYGCL 271
+A+ FE+M+ G++P+ + +EG +FF+ M E + P +KHY C+
Sbjct: 370 DAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACM 429
Query: 272 IDILERAGRLEQAEEVASGIP 292
+D+L G L++A E +P
Sbjct: 430 VDLLCHTGNLKEAYEFIETMP 450
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 15/218 (6%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
DS T ++ CV Y +G +H + G S + AL DMY + + ++K+
Sbjct: 83 LDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKI 142
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F + ++N+V+W +IT Y+R ++ LF+ M E P I +
Sbjct: 143 FRNMEQKNVVSWTAMIT----------SYTRAGHFDKVAGLFQEM-GLEGIRPDVFAITS 191
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A N +++ + +HGY + G + V+N L++ Y KCG + A +F+ V
Sbjct: 192 ALDAFAGNESLKHGKSVHGYAIRNGIEEV-LPVANALMEMYVKCGYMEEARFIFD--HVT 248
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+K+ +SW T+I G++ + EA F M + L+PN
Sbjct: 249 KKDTISWNTLIGGYSRSNLANEAFTLFNEML-LQLRPN 285
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 101/197 (51%), Gaps = 14/197 (7%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G +H K GF + V AL Y ++D+ +FDE+P+R++++WN II G
Sbjct: 3 GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
G+ D +A+ LF RM E E T+L+V+PA ++ ++HGY
Sbjct: 63 -NGLYD---------KAVELFVRM-WLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYS 111
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
+ G + + + N L+D Y+ C S +K+F + +++KN+VSWT +I+ + G
Sbjct: 112 VRTGLIS-ETSLGNALLDMYSNCSDWRSTNKIFRN--MEQKNVVSWTAMITSYTRAGHFD 168
Query: 223 EAVENFERMQKVGLKPN 239
+ F+ M G++P+
Sbjct: 169 KVAGLFQEMGLEGIRPD 185
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 28/204 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++ T + ++ +LS G ++HA + G+ +V AL DMYV G L + +LF
Sbjct: 285 NAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLF 344
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D L +NL++W ++I GY R +A+ALF +M +P + A+
Sbjct: 345 DMLTNKNLISWTIMIA----------GYGMHGRGRDAIALFEQMKG-SGIQPDAGSFSAI 393
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAF--------DIHVSNCLIDTYAKCGCIFSASKL 194
L A +G +R+ G+ R FNA + C++D G + A +
Sbjct: 394 LYACSHSG-LRD----EGW---RFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEAYEF 445
Query: 195 FEDTSVDRKNLVSWTTIISGFAMH 218
E ++ + + W +++ G +H
Sbjct: 446 IETMPIEPDSSI-WVSLLRGCRIH 468
>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 144/273 (52%), Gaps = 24/273 (8%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T ++ C LG + + G S++ + AL DMY G L + LF+ +
Sbjct: 266 TMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGI 325
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
E+++++WNV+I G YS MN EALALFR+M EP+++T +++LPA
Sbjct: 326 CEKDIISWNVMIGG----------YSHMNSYKEALALFRKMQQSN-VEPNDVTFVSILPA 374
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
G + + IH Y +K+ + + LID YAKCG I +A ++F + K+L
Sbjct: 375 CAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVF--AGMKPKSL 432
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDK 254
SW +ISG AMHG A+E F +M+ G +P+ +G E G + F
Sbjct: 433 GSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSS 492
Query: 255 MVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
MVE+ ++ P ++HYGC+ID+L RAG ++AE +
Sbjct: 493 MVEDYDISPKLQHYGCMIDLLGRAGLFDEAEAL 525
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 146/304 (48%), Gaps = 42/304 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S+T+ FL+++C + G Q+H K+G +S +V+T+L +MY G L + +F
Sbjct: 131 NSYTFPFLLKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVF 190
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
+ R+ V++ +ITG V W +I GY++ R EALA
Sbjct: 191 SKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALA 250
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
F+ M P+E T++ VL A ++G + + + E G + ++ + N LID
Sbjct: 251 FFQEMKRANVA-PNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGS-NLRLVNALIDM 308
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR- 240
Y+KCG + A LFE + K+++SW +I G++ KEA+ F +MQ+ ++PN
Sbjct: 309 YSKCGDLDKARDLFE--GICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDV 366
Query: 241 -------------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ +G+ + DK L + + LID+ + G +E A++V
Sbjct: 367 TFVSILPACAYLGALDLGKWIHAYIDKKFLG---LTNTSLWTSLIDMYAKCGNIEAAKQV 423
Query: 288 ASGI 291
+G+
Sbjct: 424 FAGM 427
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 132/315 (41%), Gaps = 62/315 (19%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV--SLGFLKDSSKLFDELPE 87
L+ TC S+ NL Q+H+ K G + + + L + G L + LF+ + +
Sbjct: 38 LLSTCK--SFQNL-KQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIEQ 94
Query: 88 RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIW 147
N WN +I G S + A+ + RM C EP+ T +L +
Sbjct: 95 PNQFIWNTMIR----------GNSLSSSPVGAIDFYVRMLLCG-VEPNSYTFPFLLKSCA 143
Query: 148 KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC---------------------- 185
K G + + IHG+ K G + D V LI+ YA+
Sbjct: 144 KVGATQEGKQIHGHVLKLGLES-DPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFT 202
Query: 186 ---------GCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
GC+ A +LFE+ V ++ VSW +I+G+A G +EA+ F+ M++ +
Sbjct: 203 ALITGYTLRGCLDDARRLFEEIPV--RDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANV 260
Query: 237 KPNRSWRI------GEEGL----KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
PN S + + G + +E+ + +++ LID+ + G L++A +
Sbjct: 261 APNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARD 320
Query: 287 VASGIPSQITNVVVW 301
+ GI + +++ W
Sbjct: 321 LFEGICEK--DIISW 333
>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
Length = 635
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 144/293 (49%), Gaps = 38/293 (12%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
S T S + C L+ LG LHA K+ YV TAL MY G + LFD
Sbjct: 133 SHTLSSSLPACHGLA---LGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFD 189
Query: 84 ELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALAL 122
E+P+ ++V ++T K W +IDGY++ R NEAL L
Sbjct: 190 EMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRL 249
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
FR M +P E+ I+ L A+ + G + + +H Y + + V LID Y
Sbjct: 250 FRWMLR-SGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMY 308
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW 242
KCG + A +F S+ K++V W +I+G+AMHG ++A+E F +++ GL P
Sbjct: 309 CKCGSLEDAVSVF--NSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDIT 366
Query: 243 RIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
IG +EG +FF M EE ++P I+HYGC++D+L RAG +E+A
Sbjct: 367 FIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEA 419
>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
Length = 634
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 144/293 (49%), Gaps = 38/293 (12%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
S T S + C L+ LG LHA K+ YV TAL MY G + LFD
Sbjct: 132 SHTLSSSLPACHGLA---LGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFD 188
Query: 84 ELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALAL 122
E+P+ ++V ++T K W +IDGY++ R NEAL L
Sbjct: 189 EMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRL 248
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
FR M +P E+ I+ L A+ + G + + +H Y + + V LID Y
Sbjct: 249 FRWMLR-SGVDPDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMY 307
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW 242
KCG + A +F S+ K++V W +I+G+AMHG ++A+E F +++ GL P
Sbjct: 308 CKCGSLEDAVSVF--NSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQLRSQGLWPTDIT 365
Query: 243 RIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
IG +EG +FF M EE ++P I+HYGC++D+L RAG +E+A
Sbjct: 366 FIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEA 418
>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
Length = 779
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 153/282 (54%), Gaps = 26/282 (9%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
+R C +L+ +GTQLHA+ +K G + + +L MY G + +++ LFDE+ ++
Sbjct: 313 LRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDT 372
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
+++ +++ GY + ++ EA +F++M AC +P T+++++PA
Sbjct: 373 ISYGALLS----------GYVQNGKAEEAFLVFKKMQACN-VQPDIATMVSLIPACSHLA 421
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
+++ + HG RG A + + N LID YAKCG I + ++F+ +++VSW T
Sbjct: 422 ALQHGRCSHGSVIIRGL-ALETSICNSLIDMYAKCGRIDLSRQVFDKMPA--RDIVSWNT 478
Query: 211 IISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEEC 259
+I+G+ +HG+GKEA F M+ G +P+ I EG +FD M +
Sbjct: 479 MIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKY 538
Query: 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+LP ++HY C++D+L R G L++A + +P + +V VW
Sbjct: 539 GILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLK-ADVRVW 579
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 109/221 (49%), Gaps = 16/221 (7%)
Query: 18 LPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD 77
+PP + +T+ F+++ C L+ G +HA + VG + ++V+TAL D+Y+
Sbjct: 95 VPP--NKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGP 152
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
++ +F ++P R++V WN ++ GY+ + A+A M P+
Sbjct: 153 AANVFAKMPMRDVVAWNAMLA----------GYANHGMYHHAIAHLLDMQDRGGLRPNAS 202
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGF--NAFDIHVSNCLIDTYAKCGCIFSASKLF 195
T++++LP + ++G + +H Y + N + + L+D YAKC + A ++F
Sbjct: 203 TLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVF 262
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
+V +N V+W+ +I GF + EA F+ M G+
Sbjct: 263 HGMTV--RNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGM 301
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/295 (23%), Positives = 116/295 (39%), Gaps = 62/295 (21%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
FLV+K++Q + D T LI C L+ G H G
Sbjct: 392 FLVFKKMQACNVQP--------DIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETS 443
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
+ +L DMY G + S ++FD++P R++V+WN +I GY EA
Sbjct: 444 ICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIA----------GYGIHGLGKEAT 493
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQ-----LIHGYGEKRGFNAFDIHVS 175
LF M + EP ++T + ++ A +G V + + H YG +
Sbjct: 494 TLFLSMKNQGF-EPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHY----- 547
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH---GMGKEAVENFERMQ 232
C++D A+ G + A + + + + ++ W ++ +H +GK+ RM
Sbjct: 548 ICMVDLLARGGFLDEAYQFIQSMPL-KADVRVWGALLGACRIHKNIDLGKQV----SRMI 602
Query: 233 KVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ ++G EG F VL L +I AGR ++A EV
Sbjct: 603 Q---------KLGPEGTGNF--------VL--------LSNIFSAAGRFDEAAEV 632
>gi|224090525|ref|XP_002309013.1| predicted protein [Populus trichocarpa]
gi|222854989|gb|EEE92536.1| predicted protein [Populus trichocarpa]
Length = 583
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/289 (32%), Positives = 144/289 (49%), Gaps = 24/289 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ L+ TC + G LH K+ S ++ + MY L L+++ K F
Sbjct: 201 DRFTFVGLLGTCNSRDDLKRGELLHCQTIKLKLNSTAFIGNLIITMYSKLNLLEEAEKAF 260
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ E++L++WN I+ S N +AL F+ M P E T +
Sbjct: 261 RSIEEKDLISWNTFISSC----------SHCNDHEKALEAFKEMLNECRVRPDEFTFASA 310
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + N + IHG+ + D+ N LI+ YAKCGCI A +F + ++
Sbjct: 311 LAACSGLASMCNGKQIHGHLIRTRLYQ-DVGAGNALINMYAKCGCIAKAYYIF--SKMEH 367
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+NLVSW T+I+GF HG G +A E F +M+ +G+KP+ +G +EGL +
Sbjct: 368 QNLVSWNTMIAGFGNHGFGGKAFELFAKMKTMGVKPDSVTFVGLLTASNHAGLVDEGLVY 427
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
F+ M E + P+I+H+ CLID+L RAGRL +A+E P VV+
Sbjct: 428 FNSMEETYGISPEIEHFSCLIDLLGRAGRLNEAKEYMKKFPFGHDTVVL 476
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 97/218 (44%), Gaps = 21/218 (9%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
LI C G LHA+ K +S V V+ + ++Y L+++ ++FDE+ ERN
Sbjct: 9 LIHQCSKTKALRQGLPLHAIAIKTATRSDVIVSNHILNLYAKCRKLREARQVFDEMSERN 68
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC--EYTEPSEITILAVLPAIW 147
LV+W+ +I+ GY ++ AL LF ++ EY S I+ A L +
Sbjct: 69 LVSWSAMIS----------GYEQIGEPISALGLFSKLNIVPNEYVYASVISACASLKGLV 118
Query: 148 KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
+ + IHG K G ++ VSN LI Y KCG A L N V+
Sbjct: 119 QGKQ------IHGQALKFGLDSVSF-VSNALITMYMKCGKCSDA--LLAYNEALELNPVA 169
Query: 208 WTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG 245
+ +I+GF + + E M + G P+R +G
Sbjct: 170 YNALITGFVENQQPDKGFEVLRMMYQDGFFPDRFTFVG 207
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 73/299 (24%), Positives = 128/299 (42%), Gaps = 27/299 (9%)
Query: 16 SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL 75
S L + + + Y+ +I C +L G Q+H K G S +V+ AL MY+ G
Sbjct: 93 SKLNIVPNEYVYASVISACASLKGLVQGKQIHGQALKFGLDSVSFVSNALITMYMKCGKC 152
Query: 76 KDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS 135
D+ ++E E N V +N +ITG V+ G+ + RM + P
Sbjct: 153 SDALLAYNEALELNPVAYNALITGFVENQQPDKGFEVL-----------RMMYQDGFFPD 201
Query: 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
T + +L +++ +L+H K N+ + N +I Y+K + A K F
Sbjct: 202 RFTFVGLLGTCNSRDDLKRGELLHCQTIKLKLNS-TAFIGNLIITMYSKLNLLEEAEKAF 260
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM-QKVGLKPNR----SWRIGEEGL- 249
S++ K+L+SW T IS + ++A+E F+ M + ++P+ S GL
Sbjct: 261 R--SIEEKDLISWNTFISSCSHCNDHEKALEAFKEMLNECRVRPDEFTFASALAACSGLA 318
Query: 250 -----KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
K + + D+ LI++ + G + +A + S + Q N+V W T
Sbjct: 319 SMCNGKQIHGHLIRTRLYQDVGAGNALINMYAKCGCIAKAYYIFSKMEHQ--NLVSWNT 375
>gi|147816693|emb|CAN62262.1| hypothetical protein VITISV_013985 [Vitis vinifera]
Length = 531
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 157/313 (50%), Gaps = 38/313 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++TY+F+++ C L G Q+H K G +++T+L MY L + +
Sbjct: 122 DNYTYTFVLKVCSHLKAIFEGKQVHCQVIKAGVAPDTHIHTSLIHMYAKSDCLACAEGVL 181
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
E + N++ N +I+G + W+G+I GY++ EAL
Sbjct: 182 AECSQENVLAINSMISGYMSQGHVEKARAMFDKMGAKDAATWSGMITGYTKNGMHEEALV 241
Query: 122 LFRRMAACEYT--EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
+FR M + +P+E +++ L A G + + IH Y + G I + L+
Sbjct: 242 MFREMMMVSNSGVQPNESALVSSLSATACLGALDQGRWIHAYIRRIGAK-ISITLGTGLV 300
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D YAKCG I + KLF + + ++++V+W ++SGFAMHG ++ + F+ M G +PN
Sbjct: 301 DMYAKCGSIHCSYKLFRE--MQQRDVVTWGVMMSGFAMHGQARKCFQLFDEMVAGGTRPN 358
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
+ E G +F++MV + + P ++HYGC++D+L RAG+L +AEE+
Sbjct: 359 EVIFVAILSACSHAGYLELGHHYFNQMVTDFGIRPSVEHYGCMVDLLGRAGQLAEAEELI 418
Query: 289 SGIPSQITNVVVW 301
+P + T V+W
Sbjct: 419 ISMPEEPT-AVIW 430
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 98/222 (44%), Gaps = 27/222 (12%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
Q+HA F G + L D YVS+ + + +F+ +P ++ +N +I GL
Sbjct: 43 QIHAQFIVSGLLARPPNAGRLLDSYVSMSQIYYALLVFNRIPSPDVFAYNAMIRGLTLGN 102
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
D + L + YT + + + L AI++ +V +CQ+I K
Sbjct: 103 CPYD-----SLLLYNKLLLGGLTPDNYTYTFVLKVCSHLKAIFEGKQV-HCQVI-----K 151
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
G A D H+ LI YAK C+ A + + S ++N+++ ++ISG+ G ++A
Sbjct: 152 AGV-APDTHIHTSLIHMYAKSDCLACAEGVLAECS--QENVLAINSMISGYMSQGHVEKA 208
Query: 225 VENFERMQKVGLKPNRSWR----------IGEEGLKFFDKMV 256
F++M G K +W + EE L F +M+
Sbjct: 209 RAMFDKM---GAKDAATWSGMITGYTKNGMHEEALVMFREMM 247
>gi|297839315|ref|XP_002887539.1| hypothetical protein ARALYDRAFT_339633 [Arabidopsis lyrata subsp.
lyrata]
gi|297333380|gb|EFH63798.1| hypothetical protein ARALYDRAFT_339633 [Arabidopsis lyrata subsp.
lyrata]
Length = 665
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/312 (32%), Positives = 158/312 (50%), Gaps = 32/312 (10%)
Query: 11 YIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNL-GTQLHAVFSKVGFQSHVYVNTALGDMY 69
+ H P DSF+ F I+ + G Q+HA+ K+GF + + + T+L Y
Sbjct: 51 FQHRFRESPSFVDSFSVLFAIKASSAQKASSFDGRQIHALVRKLGFNAVIQIQTSLVGFY 110
Query: 70 VSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC 129
S G L D+ ++FDE PE+ +V WT +I YS S EA+ LF+RM
Sbjct: 111 SSAGDLDDARQVFDETPEKQ---------NIVLWTAMISAYSENENSVEAIKLFKRMEE- 160
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN-AFDIHVSNCLIDTYAKCGCI 188
E E E+ + A L A G V+ + I+ KR A D+ + N L++ Y K G I
Sbjct: 161 EKIELDEVIVTAALSACADLGAVQMGEQIYSRSIKRKRRLAMDLTLRNSLLNMYVKSGEI 220
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM------QKVGLKPNRSW 242
A KLF++T RK++ ++T +I G+A++G +E++E F++M Q + PN
Sbjct: 221 EKARKLFDETM--RKDVTTYTCMIFGYALNGEAQESLELFKKMKMIDQSQDTVITPNDVT 278
Query: 243 RIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
IG EEG ++F M+ + + P H+GC++D+ R+G L+ A E +
Sbjct: 279 FIGVLMACSHSGLVEEGKQYFKSMIVDYNLKPRDAHFGCMVDLFCRSGHLKDAHEFIKQM 338
Query: 292 PSQITNVVVWRT 303
P + N V+WRT
Sbjct: 339 PIK-PNAVIWRT 349
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 102/231 (44%), Gaps = 32/231 (13%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHA--VFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
D + + C L +G Q+++ + K + + +L +MYV G ++ +
Sbjct: 165 LDEVIVTAALSACADLGAVQMGEQIYSRSIKRKRRLAMDLTLRNSLLNMYVKSGEIEKAR 224
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE-----P 134
KLFDE +++ T+ T +I GY+ + E+L LF++M + ++ P
Sbjct: 225 KLFDETMRKDVTTY----------TCMIFGYALNGEAQESLELFKKMKMIDQSQDTVITP 274
Query: 135 SEITILAVLPAIWKNGEVRNCQ-----LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
+++T + VL A +G V + +I Y K D H C++D + + G +
Sbjct: 275 NDVTFIGVLMACSHSGLVEEGKQYFKSMIVDYNLK----PRDAHF-GCMVDLFCRSGHLK 329
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
A + + + + N V W T++ +HG VE E +QK K R
Sbjct: 330 DAHEFIKQMPI-KPNAVIWRTLLGACILHG----NVELGEEVQKRIFKLER 375
>gi|449441542|ref|XP_004138541.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Cucumis sativus]
Length = 652
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 139/265 (52%), Gaps = 36/265 (13%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTGII 107
Y+ +G +K + KLFD +P R+ ++WN ++ G + W G+I
Sbjct: 272 YIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLI 331
Query: 108 DGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF 167
GY+ E L F+RM P++ T++ VL A + G + + +H Y GF
Sbjct: 332 GGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGF 391
Query: 168 NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVEN 227
I+V N LID Y+KCG I +A ++FE S+D K+L++W ++I G A HG G +A+
Sbjct: 392 KG-SIYVGNALIDMYSKCGLIENAMEVFE--SMDLKDLITWNSMICGLATHGCGADALTL 448
Query: 228 FERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILE 276
F +M+ G KP+ IG EEG +F+ MV E + P I+HYGC++D+
Sbjct: 449 FHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFG 508
Query: 277 RAGRLEQAEEVASGIPSQITNVVVW 301
RAG L++A E +P + + V+W
Sbjct: 509 RAGLLDRAIEFVKRMPME-ADAVIW 532
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 118/290 (40%), Gaps = 53/290 (18%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
L+R+C T++ L ++ A GFQ + YV + +V L + + LFD P+
Sbjct: 73 LLRSCKTVA---LLQKVQAQIITHGFQYNGYVAPNVVTSWVGLKQMAHARHLFDHFPDPK 129
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK- 148
+ WN I GY E + LF +M + + P+ T VL + K
Sbjct: 130 VELWNAISR----------GYFHNAFYREVVFLFGKMKSMD-VRPNCFTFPLVLKSCAKI 178
Query: 149 ----NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
GE +C++I G E F V+ LID Y+ I SA KLF + +N
Sbjct: 179 GAFVEGEEIHCEVIKGGLEGNQF------VATTLIDVYSGGRAIGSAYKLF--VGMLERN 230
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS---WRIGEEGL----------KF 251
+V+WT++ISG+ + A F+ L P R W I G K
Sbjct: 231 IVAWTSMISGYILCNRVALARRLFD------LAPERDVVLWNIMVSGYIEIGDMKAARKL 284
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
FD M D + +++ G +E E++ +P + NV W
Sbjct: 285 FDTMPYR-----DTMSWNTMLNGYANNGDVEACEQLFEEMPER--NVFSW 327
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 81/185 (43%), Gaps = 12/185 (6%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
++ C L +LG +H + +GF+ +YV AL DMY G ++++ ++F+ + ++
Sbjct: 366 VLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESMDLKD 425
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
L+TWN +I GL + +AL LF +M +P IT + VL +
Sbjct: 426 LITWNSMICGL----------ATHGCGADALTLFHQMKI-NGEKPDGITFIGVLCSCTHL 474
Query: 150 GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWT 209
G V A I C++D + + G + A + + ++ + V W
Sbjct: 475 GLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPME-ADAVIWA 533
Query: 210 TIISG 214
++
Sbjct: 534 ALLGA 538
>gi|357153639|ref|XP_003576518.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g56310-like [Brachypodium distachyon]
Length = 538
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 153/292 (52%), Gaps = 40/292 (13%)
Query: 43 GTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV 101
G LHA G QS +V T+L DMY + G L D+ K+FDE+PER + WN +++ V
Sbjct: 172 GPALHASALATGLAQSSSHVMTSLLDMYATAGQLGDAGKVFDEMPERTVAAWNCMLSAYV 231
Query: 102 K---------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+ WT +I G + R+ EA+ LF RM + +T++
Sbjct: 232 RCGEVDAALHFFGEMPGRDAVAWTTVIAGCANAGRAAEAVDLFWRMRKARVKD-DAVTMV 290
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
A+L A + G+++ + +H ++ G + + + N LI Y +CG + A +F +
Sbjct: 291 ALLTACAELGDLQLGRWVHARVDQDGQDQRIVLLDNALIHMYVRCGAVEDAHCMF--LRM 348
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS------WRIGEEG-----L 249
R++ VSWTT+ISG A+HG +EA+E F RM++ +P+ + W G
Sbjct: 349 PRRSTVSWTTMISGLAIHGRAEEALELFRRMEE---RPDGATLLAVLWACSHSGKVDFAW 405
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
++F+ M + P+I HYGC++D+L R+ RL +A E+A +P Q +N VW
Sbjct: 406 RYFESMERLYGITPEIHHYGCMVDMLCRSRRLYEALELAETMPLQ-SNEAVW 456
>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
Length = 820
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/294 (32%), Positives = 154/294 (52%), Gaps = 26/294 (8%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L + FT + L++ C +L LG Q+H KVG +V+V+ AL DMY G +++S +
Sbjct: 344 LPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQ 403
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
LF E P V+WN +I GY + +AL LF+ M C+ + +E+T
Sbjct: 404 LFSESPNCTDVSWNTVIV----------GYVQAGNGEKALILFKDMLECQ-VQGTEVTYS 452
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+VL A + IH K ++ + V N LID YAKCG I A +F+ +
Sbjct: 453 SVLRACAGIAALEPGSQIHSLSVKTIYDKNTV-VGNALIDMYAKCGNIKDARLVFD--ML 509
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
+ VSW +ISG+++HG+ EA++ FE M + KP++ +G + G
Sbjct: 510 REHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQ 569
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+F MVEE ++ P +HY C++ +L R+G L++A ++ IP + +V+VWR
Sbjct: 570 AYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFE-PSVMVWRA 622
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 147/302 (48%), Gaps = 36/302 (11%)
Query: 14 SHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG 73
SHS P F+++ Y L+++C+ G LH K G ++ N L + YV
Sbjct: 36 SHSS--PEFNTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYD 93
Query: 74 FLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE 133
L D++KLFDE+P+RN V+ + +I GYS+ R +EA+ LF R+ E E
Sbjct: 94 SLPDAAKLFDEMPDRNTVS----------FVTLIQGYSQCLRFSEAIGLFSRLQG-EGHE 142
Query: 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASK 193
+ VL + + +H K GF++ D V LID Y+ CG A +
Sbjct: 143 LNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDS-DAFVGTALIDCYSVCGYAECARQ 201
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR----SWRIGEEGL 249
+F+ +++ K++VSWT +++ + + +E+++ F RM+ VG KPN S GL
Sbjct: 202 VFD--AIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGL 259
Query: 250 KFFD--KMVEEC--------EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVV 299
+ F+ K V C E+ ++ LID+ ++G ++ A +V +P +V+
Sbjct: 260 EVFNVGKAVHGCAFKTSYLEELFVGVE----LIDLYIKSGDVDDALQVFEEMPKD--DVI 313
Query: 300 VW 301
W
Sbjct: 314 PW 315
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 114/209 (54%), Gaps = 14/209 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++FT++ +++ CV L N+G +H K + ++V L D+Y+ G + D+ ++F
Sbjct: 245 NNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVF 304
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+P+ +++ W+ +I Y++ +S EA+ +F RM P++ T+ ++
Sbjct: 305 EEMPKDDVIPWSFMIA----------RYAQSEQSEEAIEMFCRMRR-GLVLPNQFTLASL 353
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A +++ IH + K G + ++ VSN L+D YAKCG + ++ +LF ++
Sbjct: 354 LQACASLVDLQLGNQIHCHVVKVGLD-MNVFVSNALMDMYAKCGRMENSLQLFSESP--N 410
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERM 231
VSW T+I G+ G G++A+ F+ M
Sbjct: 411 CTDVSWNTVIVGYVQAGNGEKALILFKDM 439
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 113/220 (51%), Gaps = 16/220 (7%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
+ F +S +++ V+ + LG +HA K+GF S +V TAL D Y G+ + + ++
Sbjct: 143 LNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQV 202
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + +++V+W TG++ Y E+L LF RM + +P+ T +
Sbjct: 203 FDAIEYKDMVSW----------TGMVACYVENECFEESLKLFSRMRIVGF-KPNNFTFAS 251
Query: 142 VLPAIWKNGEVRNC-QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
VL A EV N + +HG K + ++ V LID Y K G + A ++FE+
Sbjct: 252 VLKAC-VGLEVFNVGKAVHGCAFKTSYLE-ELFVGVELIDLYIKSGDVDDALQVFEEMPK 309
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
D +++ W+ +I+ +A +EA+E F RM++ + PN+
Sbjct: 310 D--DVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQ 347
>gi|224124454|ref|XP_002330027.1| predicted protein [Populus trichocarpa]
gi|222871452|gb|EEF08583.1| predicted protein [Populus trichocarpa]
Length = 502
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 157/282 (55%), Gaps = 26/282 (9%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
+ + S +R C ++ LG Q+H K GF+S + V ++ DMY G L ++ +
Sbjct: 143 LNPHSISIAVRACASVGSNILGRQIHTAVIKHGFESDLPVMNSILDMYCRCGCLSEAKEY 202
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+E+ E++L+TWN +I GY R + S E L +F +M + E P+ T +
Sbjct: 203 FNEMSEKDLITWNTLIA----------GYERSD-SIEPLFIFSQMES-EGFSPNCFTFTS 250
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
++ A ++ Q +HG +RG + ++ ++N LID YAKCG I + K F + S
Sbjct: 251 LVAACANAAALQCGQQVHGGIFRRGLDG-NLELANALIDMYAKCGNIIDSQKNFSEMSC- 308
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
NLVSWT+++ G+ HG GKEAVE F+ M + G++P++ + ++GL+
Sbjct: 309 -TNLVSWTSMMIGYGTHGYGKEAVELFDEMVRSGIRPDQVVFMAVLHACSHAGLVDQGLR 367
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+F+ M+++ + P+ + YGC++ +L RAGR+E+A + +P
Sbjct: 368 YFNCMLDDYHIKPNQEIYGCVVGLLGRAGRVEEAYHLIRSMP 409
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 123/243 (50%), Gaps = 27/243 (11%)
Query: 4 YKQLQQIYIH--SHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVY 60
Y Q +++ + +PP ++FT S +++ C ++ G +H + K F + +Y
Sbjct: 22 YTQAWSVFVDMVKNDNVPP--NAFTISSVLKACKGMNSVFCGGLVHGLAIKRRFVEGFIY 79
Query: 61 VNTALGDMYVSLGF-LKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEA 119
V+ AL DMY + G ++D+ +F ++ E+N+V+ WT +I GY+ + A
Sbjct: 80 VDNALMDMYATCGVTMRDACVVFHDIKEKNVVS----------WTTLIAGYTHRGNGSRA 129
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
+ +FR ++ E E + +I + A G + IH K GF + D+ V N ++
Sbjct: 130 VQVFREISL-EGAELNPHSISIAVRACASVGSNILGRQIHTAVIKHGFES-DLPVMNSIL 187
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVEN---FERMQKVGL 236
D Y +CGC+ A + F + S K+L++W T+I+G+ +++E F +M+ G
Sbjct: 188 DMYCRCGCLSEAKEYFNEMS--EKDLITWNTLIAGYER----SDSIEPLFIFSQMESEGF 241
Query: 237 KPN 239
PN
Sbjct: 242 SPN 244
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 76/156 (48%), Gaps = 13/156 (8%)
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+PER++V T +I GY+ N +A ++F M + P+ TI +VL
Sbjct: 1 MPERDVVAL----------TAMISGYTHCNEYTQAWSVFVDMVKNDNVPPNAFTISSVLK 50
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF-SASKLFEDTSVDRK 203
A V L+HG KR F I+V N L+D YA CG A +F D + K
Sbjct: 51 ACKGMNSVFCGGLVHGLAIKRRFVEGFIYVDNALMDMYATCGVTMRDACVVFHD--IKEK 108
Query: 204 NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
N+VSWTT+I+G+ G G AV+ F + G + N
Sbjct: 109 NVVSWTTLIAGYTHRGNGSRAVQVFREISLEGAELN 144
>gi|449531466|ref|XP_004172707.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like, partial [Cucumis sativus]
Length = 610
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/265 (33%), Positives = 139/265 (52%), Gaps = 36/265 (13%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTGII 107
Y+ +G +K + KLFD +P R+ ++WN ++ G + W G+I
Sbjct: 230 YIEIGDMKAARKLFDTMPYRDTMSWNTMLNGYANNGDVEACEQLFEEMPERNVFSWNGLI 289
Query: 108 DGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF 167
GY+ E L F+RM P++ T++ VL A + G + + +H Y GF
Sbjct: 290 GGYAHNGCFFEVLRCFKRMLIDGLVVPNDATLVTVLSACARLGALDLGKWVHVYAATIGF 349
Query: 168 NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVEN 227
I+V N LID Y+KCG I +A ++FE S+D K+L++W ++I G A HG G +A+
Sbjct: 350 KG-SIYVGNALIDMYSKCGLIENAMEVFE--SMDLKDLITWNSMICGLATHGCGADALTL 406
Query: 228 FERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILE 276
F +M+ G KP+ IG EEG +F+ MV E + P I+HYGC++D+
Sbjct: 407 FHQMKINGEKPDGITFIGVLCSCTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFG 466
Query: 277 RAGRLEQAEEVASGIPSQITNVVVW 301
RAG L++A E +P + + V+W
Sbjct: 467 RAGLLDRAIEFVKRMPME-ADAVIW 490
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 129/318 (40%), Gaps = 53/318 (16%)
Query: 2 LVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYV 61
L+ ++ ++ ++S P + L+R+C T++ L ++ A GFQ + YV
Sbjct: 3 LLSGKIAKLLLYSAQKHPRWVLEEHFISLLRSCKTVA---LLQKVQAQIITHGFQYNGYV 59
Query: 62 NTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALA 121
+ +V L + + LFD P+ + WN I GY E +
Sbjct: 60 APNVVTSWVGLKQMAHARHLFDHFPDPKVELWNAISR----------GYFHNAFYREVVF 109
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWK-----NGEVRNCQLIHGYGEKRGFNAFDIHVSN 176
LF +M + + P+ T VL + K GE +C++I G E F V+
Sbjct: 110 LFGKMKSMD-VRPNCFTFPLVLKSCAKIGAFVEGEEIHCEVIKGGLEGNQF------VAT 162
Query: 177 CLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
LID Y+ I SA KLF + +N+V+WT++ISG+ + A F+ L
Sbjct: 163 TLIDVYSGGRAIGSAYKLF--VGMLERNIVAWTSMISGYILCNRVALARRLFD------L 214
Query: 237 KPNRS---WRIGEEGL----------KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQ 283
P R W I G K FD M D + +++ G +E
Sbjct: 215 APERDVVLWNIMVSGYIEIGDMKAARKLFDTMPYR-----DTMSWNTMLNGYANNGDVEA 269
Query: 284 AEEVASGIPSQITNVVVW 301
E++ +P + NV W
Sbjct: 270 CEQLFEEMPER--NVFSW 285
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 12/189 (6%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T ++ C L +LG +H + +GF+ +YV AL DMY G ++++ ++F+ +
Sbjct: 320 TLVTVLSACARLGALDLGKWVHVYAATIGFKGSIYVGNALIDMYSKCGLIENAMEVFESM 379
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
++L+TWN +I GL + +AL LF +M +P IT + VL +
Sbjct: 380 DLKDLITWNSMICGL----------ATHGCGADALTLFHQMKI-NGEKPDGITFIGVLCS 428
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
G V A I C++D + + G + A + + ++ +
Sbjct: 429 CTHLGLVEEGTSYFNSMVNEYSIAPQIEHYGCMVDLFGRAGLLDRAIEFVKRMPME-ADA 487
Query: 206 VSWTTIISG 214
V W ++
Sbjct: 488 VIWAALLGA 496
>gi|297737809|emb|CBI27010.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 135/263 (51%), Gaps = 35/263 (13%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTGII 107
Y+ G + ++ KLF E+P R+++ WN ++ G + W +I
Sbjct: 85 YIEGGDMVEARKLFHEMPNRDVMFWNTVLKGYATNGNVEALEGLFEEMPERNIFSWNALI 144
Query: 108 DGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF 167
GY+ E L F+RM + P++ T++ VL A + G + + +H Y E G
Sbjct: 145 GGYAHNGLFFEVLGSFKRMLSESDVPPNDATLVTVLSACARLGALDLGKWVHVYAESSGL 204
Query: 168 NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVEN 227
+++V N L+D YAKCG I +A +F +D K+L+SW T+I G AMH G +A+
Sbjct: 205 KG-NVYVGNALMDMYAKCGIIENAISVFR--GMDTKDLISWNTLIGGLAMHSRGADALNL 261
Query: 228 FERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILE 276
F +M+ G KP+ IG E+G +F M ++ ++P I+HYGC++D+L
Sbjct: 262 FFQMKNAGQKPDGITFIGILCACTHMGLVEDGFAYFQSMADDYLIMPQIEHYGCMVDMLA 321
Query: 277 RAGRLEQAEEVASGIPSQITNVV 299
RAGRLEQA +P + V+
Sbjct: 322 RAGRLEQAMAFVRKMPVEADGVI 344
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 87/212 (41%), Gaps = 36/212 (16%)
Query: 14 SHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG 73
S S +PP + T ++ C L +LG +H G + +VYV AL DMY G
Sbjct: 165 SESDVPP--NDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCG 222
Query: 74 FLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE 133
++++ +F + ++L++WN +I GL + +R +AL LF +M +
Sbjct: 223 IIENAISVFRGMDTKDLISWNTLIGGL----------AMHSRGADALNLFFQMKNAG-QK 271
Query: 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF-----------DIHVSNCLIDTY 182
P IT + +L A G V + GF F I C++D
Sbjct: 272 PDGITFIGILCACTHMGLVED-----------GFAYFQSMADDYLIMPQIEHYGCMVDML 320
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISG 214
A+ G + A V+ ++ W ++
Sbjct: 321 ARAGRLEQAMAFVRKMPVEADGVI-WAGLLGA 351
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 110/257 (42%), Gaps = 47/257 (18%)
Query: 78 SSKLFDELPERNLVTWNVIITG------------------LVKWTGIIDGYSRMNRSNEA 119
+ +LFD++P+ N+ WN + G +V WT +I+GY A
Sbjct: 4 ARQLFDQIPDPNIALWNSMFRGYAQSESYREIFCEMFERNVVAWTSMINGYILSADLVSA 63
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGE--VRNCQLIHGYGEKRGFNAFDIHVSNC 177
LF + ++ + ++ + + G V +L H + D+ N
Sbjct: 64 RRLF------DLAPERDVVLWNIMVSGYIEGGDMVEARKLFHEMPNR------DVMFWNT 111
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM-QKVGL 236
++ YA G + + LFE+ + +N+ SW +I G+A +G+ E + +F+RM + +
Sbjct: 112 VLKGYATNGNVEALEGLFEE--MPERNIFSWNALIGGYAHNGLFFEVLGSFKRMLSESDV 169
Query: 237 KPNRS---------WRIGEEGLKFFDKMVEECEVLPDIKHYG-CLIDILERAGRLEQAEE 286
PN + R+G L + + E L + G L+D+ + G +E A
Sbjct: 170 PPNDATLVTVLSACARLGALDLGKWVHVYAESSGLKGNVYVGNALMDMYAKCGIIENAIS 229
Query: 287 VASGIPSQITNVVVWRT 303
V G+ ++ +++ W T
Sbjct: 230 VFRGMDTK--DLISWNT 244
>gi|125590818|gb|EAZ31168.1| hypothetical protein OsJ_15267 [Oryza sativa Japonica Group]
Length = 586
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 151/281 (53%), Gaps = 25/281 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T + ++ C L G +H + + + ++ V AL DMYV L + ++F
Sbjct: 215 NEVTLASVLVACGNLGTARAGKAVHGWYFRREKELNLIVGNALLDMYVKCEKLDLARRVF 274
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D L R++V+W V+I+GLV+ R +EAL +F M +P ++ + V
Sbjct: 275 DMLLARDIVSWTVMISGLVQ----------CKRPSEALEVFNAMQ-ISGVKPDKVVLSTV 323
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + + + +H Y E++G +D+HV ++D Y KCGC+ +A +F++ +
Sbjct: 324 LSACASLGALESGRWVHEYIERKGIE-WDVHVGTSVVDMYVKCGCLDTAVSIFQEMPL-- 380
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN+ SW +I+GFA+HG G+EA++ F+RM GL PN I +EG +
Sbjct: 381 KNVSSWNALINGFALHGRGREALDCFDRMVASGLHPNEVTFITVLGACCHSGLVQEGRQL 440
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
F+ M + ++ P HYGC++D+L RAG +++A +V +P
Sbjct: 441 FELMTKSYKLSPWEDHYGCMVDLLGRAGLIQEAYDVIKAMP 481
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 139/302 (46%), Gaps = 35/302 (11%)
Query: 23 DSFTYSFLIRTCVTLSYP-NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D +T ++ C L G Q HAV K GF V V AL Y + G D+ K+
Sbjct: 116 DGYTLPAALKACARLGGGLREGCQAHAVAEKAGFLGRVPVQNALVTFYGACGQCGDARKV 175
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FDE+ ER++V+ WT ++ ++R EAL + M P+E+T+ +
Sbjct: 176 FDEMAERDVVS----------WTALLSAFTRGGMFMEALGVLAEMD----VTPNEVTLAS 221
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL A G R + +HG+ +R ++ V N L+D Y KC + A ++F+ +
Sbjct: 222 VLVACGNLGTARAGKAVHGWYFRRE-KELNLIVGNALLDMYVKCEKLDLARRVFD--MLL 278
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---------SWRIGE-EGLKF 251
+++VSWT +ISG EA+E F MQ G+KP++ +G E ++
Sbjct: 279 ARDIVSWTVMISGLVQCKRPSEALEVFNAMQISGVKPDKVVLSTVLSACASLGALESGRW 338
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLIN 311
+ +E + D+ ++D+ + G L+ A + +P + NV W LIN
Sbjct: 339 VHEYIERKGIEWDVHVGTSVVDMYVKCGCLDTAVSIFQEMP--LKNVSSWNA-----LIN 391
Query: 312 SY 313
+
Sbjct: 392 GF 393
>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 164/359 (45%), Gaps = 67/359 (18%)
Query: 5 KQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTA 64
K + IY + + + FTY L + C G Q+H K G S V++ +A
Sbjct: 113 KLFKAIYFYGRMVIDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSA 172
Query: 65 LGDMYVSLGFLKDSSK------------------------------LFDELPERNLVTWN 94
MY S G L+D+ K LF ++P +N+ +WN
Sbjct: 173 GIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWN 232
Query: 95 VIITGLVK---------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTE 133
V+I GL K W+ ++DGY R EAL +F++M E T
Sbjct: 233 VMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQR-EETR 291
Query: 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASK 193
P + +VL A G + + +H Y KR D + L+D YAKCG + +
Sbjct: 292 PGRFILSSVLAACSNIGAIDQGRWVHAY-LKRNSIKLDAVLGTALLDMYAKCGRLDMGWE 350
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-------- 245
+FE+ + + + +W +I G A+HG ++A+E F ++Q+ +KPN +G
Sbjct: 351 VFEE--MKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHA 408
Query: 246 ---EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
++GL+ F M E V P+++HYGC++D+L R+G +AE++ + +P + N VW
Sbjct: 409 GFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMK-PNAAVW 466
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 125/280 (44%), Gaps = 48/280 (17%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVSLGF--LKD 77
LFDS ++ +L Y TQLHA+ + G FQ H YV+ AL Y + F
Sbjct: 37 LFDS-------KSITSLQYL---TQLHALVLRSGHFQDH-YVSGALLKCYANPHFSNFDF 85
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
+ K+F +P N+ WN++I G ++ N+ +A+ + RM P++
Sbjct: 86 ALKVFSSIPNPNVFIWNIVIKGCLE----------NNKLFKAIYFYGRMVI--DARPNKF 133
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
T + A V+ + IHG+ K G + D+H+ + I YA G + A K+F
Sbjct: 134 TYPTLFKACSVAQAVQEGRQIHGHVVKHGIGS-DVHIKSAGIQMYASFGRLEDARKMFYS 192
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGL-------- 249
D +V W T+I G+ G+ + A F +M +K SW + GL
Sbjct: 193 GESD---VVCWNTMIDGYLKCGVLEAAKGLFAQMP---VKNIGSWNVMINGLAKGGNLGD 246
Query: 250 --KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
K FD+M E E+ + ++D AGR ++A E+
Sbjct: 247 ARKLFDEMSERDEI-----SWSSMVDGYISAGRYKEALEI 281
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 28/226 (12%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
F S ++ C + + G +HA + + + TAL DMY G L ++F+E
Sbjct: 295 FILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEE 354
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ ER + TWN +I GL I G R+ +AL LF ++ +P+ IT++ VL
Sbjct: 355 MKEREIFTWNAMIGGLA-----IHG-----RAEDALELFSKLQEGR-MKPNGITLVGVLT 403
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN--CLIDTYAKCGCIFSASKLFEDTSVDR 202
A G V I + R F D + + C++D + G A L + +
Sbjct: 404 ACAHAGFVDKGLRI--FQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPM-K 460
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-----LKPNRSWR 243
N W ++ +HG NF+ ++VG L+P S R
Sbjct: 461 PNAAVWGALLGACRIHG-------NFDLAERVGKILLELEPQNSGR 499
>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 733
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 156/311 (50%), Gaps = 36/311 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S T ++ C G + + + G + + + A+ DMY G + D+ KLF
Sbjct: 226 NSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLF 285
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
DE+PER++ +W +++ G K W +I Y + + EALA
Sbjct: 286 DEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALA 345
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
+F + + +P E+T+++ L A + G + IH Y ++ G + H+ + L+D
Sbjct: 346 IFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGI-VLNCHLISSLVDM 404
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR- 240
YAKCG + A ++F SV+ +++ W+ +I+G MHG GK A++ F MQ+ +KPN
Sbjct: 405 YAKCGSLEKALEVF--YSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSV 462
Query: 241 ----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+ +EG FF +M V+P++KHY C++DIL RAG LE+A E+ +
Sbjct: 463 TFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELINE 522
Query: 291 IPSQITNVVVW 301
+ S + VW
Sbjct: 523 M-STTPSASVW 532
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 105/199 (52%), Gaps = 14/199 (7%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L + FT+ F+I+ L +GT +H + K+ F +Y+ +L Y + G L + +
Sbjct: 123 LPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAER 182
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
LF + +++V+WN +I+ +++ N +AL LF +M E P+ +T++
Sbjct: 183 LFKGISCKDVVSWNSMIS----------AFAQGNCPEDALELFLKMER-ENVMPNSVTMV 231
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
VL A K ++ + + Y E++G D+ + N ++D Y KCG + A KLF++ +
Sbjct: 232 GVLSACAKKLDLEFGRWVCSYIERKGIKV-DLTLCNAMLDMYTKCGSVDDAQKLFDE--M 288
Query: 201 DRKNLVSWTTIISGFAMHG 219
+++ SWT ++ G+A G
Sbjct: 289 PERDVFSWTIMLDGYAKMG 307
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 123/274 (44%), Gaps = 37/274 (13%)
Query: 45 QLHAVFSKVGF------QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIIT 98
++HA + G S ++ +AL S L + LFD++P+ NL TWN +I
Sbjct: 43 EVHARMLRTGLFFDPFSASKLFTASALS----SFSTLDYARNLFDQIPQPNLYTWNTLIR 98
Query: 99 GLVKWTGIIDGYSRMNRSNEALALFRRM-AACEYTEPSEITILAVLPAIWKNGEVRNCQL 157
Y+ + ++ +F + CE P++ T V+ A + R
Sbjct: 99 A----------YASSSDPFQSFVIFLDLLDKCEDL-PNKFTFPFVIKAASELKASRVGTA 147
Query: 158 IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAM 217
+HG K F D+++ N L+ Y CG + A +LF+ S K++VSW ++IS FA
Sbjct: 148 VHGMAIKLSF-GMDLYILNSLVRFYGACGDLSMAERLFKGISC--KDVVSWNSMISAFAQ 204
Query: 218 HGMGKEAVENFERMQKVGLKPNRSWRIGE----------EGLKFFDKMVEECEVLPDIKH 267
++A+E F +M++ + PN +G E ++ +E + D+
Sbjct: 205 GNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTL 264
Query: 268 YGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
++D+ + G ++ A+++ +P + +V W
Sbjct: 265 CNAMLDMYTKCGSVDDAQKLFDEMPER--DVFSW 296
>gi|296087773|emb|CBI35029.3| unnamed protein product [Vitis vinifera]
Length = 1596
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 150/292 (51%), Gaps = 27/292 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKL 81
D T+ F+I C + LG Q+H K G S +V TAL Y + D+ KL
Sbjct: 104 DQHTFPFIISACTNSLWMLLGKQIHNWVLKNGVASSDRHVQTALVRFYAECCAMGDARKL 163
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FDE+P ++V WNV++ +GY R + EAL FR M EP E +
Sbjct: 164 FDEIPNLDVVQWNVLL----------NGYVRRGLAPEALNAFRNMLV-SGVEPDEFCLTT 212
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L + G ++ + IH Y KR + D+ + L+D YAKCGCI + ++FE +
Sbjct: 213 ALKGCAQLGALQQGKWIHEYVTKRKWLEADVFIGTALVDMYAKCGCIDRSVEVFE--GMT 270
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQ-KVGLKPNRSWRIG-----------EEGL 249
++N+ SW+ +I GFA+HG ++A++ ERMQ + GL+P+ +G EEG
Sbjct: 271 KRNVFSWSAMIGGFALHGHVRKAMQCLERMQVEDGLRPDGVVLLGVIMACAHAGLQEEGQ 330
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ M +LP +HY C++D+L RAG+L++A ++ +P + VW
Sbjct: 331 FLLENMEARYGILPKHEHYSCMVDLLCRAGQLDEALKLIRRMPMK-PRAAVW 381
>gi|449521058|ref|XP_004167548.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 376
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 160/297 (53%), Gaps = 31/297 (10%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P+ +SFT +F+++ C ++ G Q+H+ K GF S ++V T+L + Y + +
Sbjct: 88 PVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFAR 147
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
K+F+E+P RNLV WT +I G++R+ +EA+ LFR M +P +T+
Sbjct: 148 KVFEEMPVRNLVA----------WTAMISGHARVGAVDEAMELFREMQKAG-IQPDAMTL 196
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
++V+ A G + +H Y EK F D+ +S L+D YAKCGCI A ++F
Sbjct: 197 VSVVSACAVAGALDIGCWLHAYIEKY-FVLTDLELSTALVDMYAKCGCIERAKQVFVHMP 255
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
V K+ +W+++I GFA HG+ ++A++ F++M + + P+ + G
Sbjct: 256 V--KDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRG 313
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS--GIPSQITNVVVWRT 303
+F+ M+ E + P ++HYGC +D+L R+G +E+A + + IP N WR+
Sbjct: 314 RRFWSLML-EFGIEPSVEHYGCKVDLLCRSGLVEEAYRITTTMKIPP---NAATWRS 366
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 118/251 (47%), Gaps = 44/251 (17%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNR-SNEALALFRRMAACEY 131
G + + +F ++P N+ +WN +I GYS+++ S E + LF+++ Y
Sbjct: 38 GNINYARSVFAQIPHPNIFSWN----------SLIKGYSQIHTLSKEPIFLFKKLTETGY 87
Query: 132 TEPSEITILAVLPAIWKNGEVRNCQLIHGYGE---------KRGFNAFDIHVSNCLIDTY 182
P+ T+ VL A C ++ +GE K GF + + V L++ Y
Sbjct: 88 PVPNSFTLAFVLKA---------CAIVTAFGEGLQVHSHVLKDGFGS-SLFVQTSLVNFY 137
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW 242
KC I A K+FE+ V +NLV+WT +ISG A G EA+E F MQK G++P+
Sbjct: 138 GKCEEIGFARKVFEEMPV--RNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMT 195
Query: 243 RIGEEGL----------KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+ + +E+ VL D++ L+D+ + G +E+A++V +P
Sbjct: 196 LVSVVSACAVAGALDIGCWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMP 255
Query: 293 SQITNVVVWRT 303
+ + W +
Sbjct: 256 --VKDTTAWSS 264
>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 629
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 107/401 (26%), Positives = 180/401 (44%), Gaps = 115/401 (28%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
F V+ ++Q+ + + D+FTY FL++ C LS+ + +H K+G S +Y
Sbjct: 102 FFVFSEMQRFGLFA--------DNFTYPFLLKACSGLSWLPVVKMMHNHIEKLGLSSDIY 153
Query: 61 VNTALGDMY---------------------------------VSLGFLKDSSKLFDELPE 87
V AL D Y V G L+D+ KLFDE+P+
Sbjct: 154 VPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARKLFDEMPQ 213
Query: 88 RNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALALFRRM 126
R+L++WN ++ G V W+ ++ GYS+ A +F +M
Sbjct: 214 RDLISWNTMLDGYARCREMSRAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKM 273
Query: 127 AACEYTEPSEITILAVLPAIWKNGEVRNC-----QLI----------------------- 158
+ + +T ++ + G ++ Q++
Sbjct: 274 P---FPAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVASGLRFDAAAAISILAACAESGL 330
Query: 159 -------HGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTI 211
H +K N+ + V N L+D YAKCG + A +F D + +K+LVSW T+
Sbjct: 331 LSLGMRAHSIIKKSNLNS-NASVLNALLDMYAKCGSLKKAFDVFND--MPKKDLVSWNTM 387
Query: 212 ISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECE 260
+ G +HG GKEA+E F RM+K G+ P++ I +EG+ +F M + +
Sbjct: 388 LHGLGVHGHGKEAIELFSRMRKEGIWPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYD 447
Query: 261 VLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
++P ++HYGCL+D+L R GRL++A +V +P + NVV+W
Sbjct: 448 LVPKVEHYGCLVDLLGRGGRLKEAIKVVQTMPME-PNVVIW 487
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 99/196 (50%), Gaps = 17/196 (8%)
Query: 41 NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGL 100
+LG + H++ K S+ V AL DMY G LK + +F+++P+++LV+WN ++ GL
Sbjct: 332 SLGMRAHSIIKKSNLNSNASVLNALLDMYAKCGSLKKAFDVFNDMPKKDLVSWNTMLHGL 391
Query: 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHG 160
+ G+ + EA+ LF RM E P ++T +AVL + G + + + +
Sbjct: 392 G-----VHGHGK-----EAIELFSRMRK-EGIWPDKVTFIAVLCSCNHAGLI-DEGIDYF 439
Query: 161 YGEKRGFNAF-DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
Y ++ ++ + CL+D + G + A K+ + ++ N+V W ++ MH
Sbjct: 440 YSMEKVYDLVPKVEHYGCLVDLLGRGGRLKEAIKVVQTMPME-PNVVIWGALLGACRMHN 498
Query: 220 ---MGKEAVENFERMQ 232
+ KE ++N ++
Sbjct: 499 EVDIAKEVLDNLVKLD 514
>gi|225423493|ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 155/316 (49%), Gaps = 39/316 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++T ++++ C L +LG H K+GF ++V L MY S G ++ + +F
Sbjct: 104 DNYTLPYVLKACAGLQSCHLGESAHGQSVKLGFWFDIFVGNTLIAMYSSFGNVRAARCIF 163
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
DE+P V+W V+I+G K W II GY + N E L
Sbjct: 164 DEMPWHTAVSWTVMISGYAKVGDVETARMLFDEAPMKDRGIWGSIISGYVQNNCFKEGLQ 223
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
+FR M + EP E ++++L A G + +H Y ++ G + + +S LID
Sbjct: 224 MFRLMQSTGL-EPDEAILVSILCACAHLGAMEIGVWVHRYLDQLG-HPLSVRLSTGLIDM 281
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR- 240
YAKCG + A KLF+ S +++ + W +ISG AM+G G A+ F M+K G+KP+
Sbjct: 282 YAKCGSLDIAKKLFDGMS--QRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVKPDDI 339
Query: 241 ---------SWR-IGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
S+ + E ++ + M + P +HYGC++D+L RAG L++A+E+
Sbjct: 340 TFIAIFTACSYSGMAHEAIRLLNSMCTVYNMEPKSEHYGCIVDLLGRAGLLKEAKELILK 399
Query: 291 IP---SQITNVVVWRT 303
+P S + WR
Sbjct: 400 MPNSSSPTEQAIAWRA 415
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 97/230 (42%), Gaps = 20/230 (8%)
Query: 7 LQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALG 66
LQ + + L P D ++ C L +G +H ++G V ++T L
Sbjct: 222 LQMFRLMQSTGLEP--DEAILVSILCACAHLGAMEIGVWVHRYLDQLGHPLSVRLSTGLI 279
Query: 67 DMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMN-RSNEALALFRR 125
DMY G L + KLFD + +R+ + WN +I+G+ MN + AL LF
Sbjct: 280 DMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMA-----------MNGDGDNALRLFSE 328
Query: 126 MAACEYTEPSEITILAVLPAIWKNGEVRNC-QLIHGYGEKRGFNAFDIHVSNCLIDTYAK 184
M +P +IT +A+ A +G +L++ H C++D +
Sbjct: 329 MEKAG-VKPDDITFIAIFTACSYSGMAHEAIRLLNSMCTVYNMEPKSEHY-GCIVDLLGR 386
Query: 185 CGCIFSASKL---FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
G + A +L ++S + ++W ++S HG + A + +R+
Sbjct: 387 AGLLKEAKELILKMPNSSSPTEQAIAWRALLSACCSHGQTEVAEDAAQRL 436
>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 809
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 157/292 (53%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F++S +++ C LS P G Q+++ K+G S V +L MY G ++D+ K F
Sbjct: 335 NHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAF 394
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D L E+NLV++N I+DGY++ +S EA LF +A S T ++
Sbjct: 395 DILFEKNLVSYN----------AIVDGYAKNLKSEEAFLLFNEIADTGIG-ISAFTFASL 443
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L G + + IHG K G+ + + N LI Y++CG I +A ++F + ++
Sbjct: 444 LSGAASIGAMGKGEQIHGRLLKGGYKSNQC-ICNALISMYSRCGNIEAAFQVFNE--MED 500
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+N++SWT++I+GFA HG A+E F +M + G KPN + EG K
Sbjct: 501 RNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKH 560
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ M +E ++P ++HY C++D+L R+G L +A E + +P + + +VWRT
Sbjct: 561 FNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP-LMADALVWRT 611
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 135/290 (46%), Gaps = 48/290 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYV-SLGFLKDSSK 80
+ + ++ +IR C +Y +G ++ K G+ ++ V V L DM+V G L + K
Sbjct: 127 NEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYK 186
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD++PERNLVTW ++IT ++++ + +A+ LF M Y P T
Sbjct: 187 VFDKMPERNLVTWTLMIT----------RFAQLGCARDAIDLFLDMELSGYV-PDRFTYS 235
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC---GCIFSASKLFED 197
+VL A + G + + +H + G A D+ V L+D YAKC G + + K+FE
Sbjct: 236 SVLSACTELGLLALGKQLHSRVIRLGL-ALDVCVGCSLVDMYAKCAADGSVDDSRKVFE- 293
Query: 198 TSVDRKNLVSWTTIISGFAMHG-MGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMV 256
+ N++SWT II+ + G KEA+E F +M ++PN F ++
Sbjct: 294 -QMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHF---------SFSSVL 343
Query: 257 EECEVLPD---------------IKHYGC----LIDILERAGRLEQAEEV 287
+ C L D I C LI + R+GR+E A +
Sbjct: 344 KACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKA 393
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 108/217 (49%), Gaps = 16/217 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL---GFLKDSS 79
D FTYS ++ C L LG QLH+ ++G V V +L DMY G + DS
Sbjct: 230 DRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSR 289
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
K+F+++PE N+++W IIT V+ +G D EA+ LF +M + + P+ +
Sbjct: 290 KVFEQMPEHNVMSWTAIITAYVQ-SGECD--------KEAIELFCKMIS-GHIRPNHFSF 339
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+VL A + + ++ Y K G + + V N LI YA+ G + A K F+
Sbjct: 340 SSVLKACGNLSDPYTGEQVYSYAVKLGIASVNC-VGNSLISMYARSGRMEDARKAFD--I 396
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
+ KNLVS+ I+ G+A + +EA F + G+
Sbjct: 397 LFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGI 433
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 107/225 (47%), Gaps = 19/225 (8%)
Query: 19 PPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
PP D TYS L+++C+ LG +H + G + V L +Y G + +
Sbjct: 23 PP--DLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETA 80
Query: 79 SKLFDEL-PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT-EPSE 136
+F+ + +R+LV+W+ +++ N S E A++ + E P+E
Sbjct: 81 RLIFEGMGNKRDLVSWSAMVSCFA------------NNSMEWQAIWTFLDMLELGFYPNE 128
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK-CGCIFSASKLF 195
AV+ A ++I+G+ K G+ D+ V LID + K G + SA K+F
Sbjct: 129 YCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVF 188
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+ + +NLV+WT +I+ FA G ++A++ F M+ G P+R
Sbjct: 189 D--KMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDR 231
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 17/207 (8%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
+FT++ L+ ++ G Q+H K G++S+ + AL MY G ++ + ++F+
Sbjct: 437 AFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFN 496
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
E+ +RN+++W +ITG K G+ + AL +F +M T+P+EIT +AVL
Sbjct: 497 EMEDRNVISWTSMITGFAK-----HGF-----ATRALEMFHKMLETG-TKPNEITYVAVL 545
Query: 144 PAIWKNGEVRNCQL-IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
A G + Q + ++ G H + C++D + G + A + +
Sbjct: 546 SACSHVGMISEGQKHFNSMYKEHGIVPRMEHYA-CMVDLLGRSGLLVEAMEFINSMPLMA 604
Query: 203 KNLVSWTTIISGFAMHG---MGKEAVE 226
LV W T++ +HG +G+ A E
Sbjct: 605 DALV-WRTLLGACRVHGNTELGRHAAE 630
>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 157/292 (53%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F++S +++ C LS P G Q+++ K+G S V +L MY G ++D+ K F
Sbjct: 353 NHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAF 412
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D L E+NLV++N I+DGY++ +S EA LF +A S T ++
Sbjct: 413 DILFEKNLVSYN----------AIVDGYAKNLKSEEAFLLFNEIADTGIG-ISAFTFASL 461
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L G + + IHG K G+ + + N LI Y++CG I +A ++F + ++
Sbjct: 462 LSGAASIGAMGKGEQIHGRLLKGGYKSNQC-ICNALISMYSRCGNIEAAFQVFNE--MED 518
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+N++SWT++I+GFA HG A+E F +M + G KPN + EG K
Sbjct: 519 RNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKH 578
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ M +E ++P ++HY C++D+L R+G L +A E + +P + + +VWRT
Sbjct: 579 FNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP-LMADALVWRT 629
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 82/290 (28%), Positives = 135/290 (46%), Gaps = 48/290 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYV-SLGFLKDSSK 80
+ + ++ +IR C +Y +G ++ K G+ ++ V V L DM+V G L + K
Sbjct: 145 NEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYK 204
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD++PERNLVTW ++IT ++++ + +A+ LF M Y P T
Sbjct: 205 VFDKMPERNLVTWTLMIT----------RFAQLGCARDAIDLFLDMELSGYV-PDRFTYS 253
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC---GCIFSASKLFED 197
+VL A + G + + +H + G A D+ V L+D YAKC G + + K+FE
Sbjct: 254 SVLSACTELGLLALGKQLHSRVIRLGL-ALDVCVGCSLVDMYAKCAADGSVDDSRKVFE- 311
Query: 198 TSVDRKNLVSWTTIISGFAMHG-MGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMV 256
+ N++SWT II+ + G KEA+E F +M ++PN F ++
Sbjct: 312 -QMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHF---------SFSSVL 361
Query: 257 EECEVLPD---------------IKHYGC----LIDILERAGRLEQAEEV 287
+ C L D I C LI + R+GR+E A +
Sbjct: 362 KACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKA 411
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 108/217 (49%), Gaps = 16/217 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL---GFLKDSS 79
D FTYS ++ C L LG QLH+ ++G V V +L DMY G + DS
Sbjct: 248 DRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSR 307
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
K+F+++PE N+++W IIT V+ +G D EA+ LF +M + + P+ +
Sbjct: 308 KVFEQMPEHNVMSWTAIITAYVQ-SGECD--------KEAIELFCKMIS-GHIRPNHFSF 357
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+VL A + + ++ Y K G + + V N LI YA+ G + A K F+
Sbjct: 358 SSVLKACGNLSDPYTGEQVYSYAVKLGIASVNC-VGNSLISMYARSGRMEDARKAFD--I 414
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
+ KNLVS+ I+ G+A + +EA F + G+
Sbjct: 415 LFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGI 451
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 107/225 (47%), Gaps = 19/225 (8%)
Query: 19 PPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
PP D TYS L+++C+ LG +H + G + V L +Y G + +
Sbjct: 41 PP--DLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETA 98
Query: 79 SKLFDEL-PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT-EPSE 136
+F+ + +R+LV+W+ +++ N S E A++ + E P+E
Sbjct: 99 RLIFEGMGNKRDLVSWSAMVSCFA------------NNSMEWQAIWTFLDMLELGFYPNE 146
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK-CGCIFSASKLF 195
AV+ A ++I+G+ K G+ D+ V LID + K G + SA K+F
Sbjct: 147 YCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVF 206
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+ + +NLV+WT +I+ FA G ++A++ F M+ G P+R
Sbjct: 207 D--KMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDR 249
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 17/207 (8%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
+FT++ L+ ++ G Q+H K G++S+ + AL MY G ++ + ++F+
Sbjct: 455 AFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFN 514
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
E+ +RN+++W +ITG K G+ + AL +F +M T+P+EIT +AVL
Sbjct: 515 EMEDRNVISWTSMITGFAK-----HGF-----ATRALEMFHKMLETG-TKPNEITYVAVL 563
Query: 144 PAIWKNGEVRNCQL-IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
A G + Q + ++ G H + C++D + G + A + +
Sbjct: 564 SACSHVGMISEGQKHFNSMYKEHGIVPRMEHYA-CMVDLLGRSGLLVEAMEFINSMPLMA 622
Query: 203 KNLVSWTTIISGFAMHG---MGKEAVE 226
LV W T++ +HG +G+ A E
Sbjct: 623 DALV-WRTLLGACRVHGNTELGRHAAE 648
>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
[Vitis vinifera]
gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
Length = 703
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 143/273 (52%), Gaps = 25/273 (9%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
FT+ +I C L G Q+H K+GF+S +YV TAL DMY + D+ K FD
Sbjct: 311 FTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDY 370
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
L E ++V WT +I GY + + +AL+L+ RM E P+E+T+ +VL
Sbjct: 371 LQEPDIVL----------WTSMIGGYVQNGENEDALSLYGRMEM-EGILPNELTMASVLK 419
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A + + IH K GF ++ + + L YAKCGC+ + +F + ++
Sbjct: 420 ACSSLAALEQGKQIHARTVKYGF-GLEVPIGSALSTMYAKCGCLKDGTLVFR--RMPARD 476
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKFFD 253
++SW +ISG + +G GKEA+E FE MQ G KP+ + E G +F
Sbjct: 477 VISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFR 536
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
M +E + P ++HY C++DIL RAG+L++A E
Sbjct: 537 MMFDEFGMDPRVEHYACMVDILSRAGKLKEAIE 569
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 110/217 (50%), Gaps = 14/217 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++ T++ + TL G HAV K+ V+V ++L +MY G ++ K+F
Sbjct: 107 NAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVF 166
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +PERN V+W +I+ GY+ + EAL LFR M E E +E +V
Sbjct: 167 DTMPERNSVSWATMIS----------GYASQKLAAEALGLFRLMRREEEGE-NEFVFTSV 215
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A+ V N + IH K G + + V N L+ YAKCG + A + FE +S
Sbjct: 216 LSALTLPELVNNGKQIHCIAVKNGLLSI-VSVGNALVTMYAKCGSLDDALQTFETSS--D 272
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
KN ++W+ +I+G+A G +A++ F M G++P+
Sbjct: 273 KNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPS 309
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 107/217 (49%), Gaps = 14/217 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F ++ ++ N G Q+H + K G S V V AL MY G L D+ + F
Sbjct: 208 NEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTF 267
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ ++N +TW+ +IT GY++ S++AL LF M PSE T + V
Sbjct: 268 ETSSDKNSITWSAMIT----------GYAQSGDSDKALKLFSSM-HLSGIRPSEFTFVGV 316
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A G + +H Y K GF + I+V L+D YAKC I A K F+ +
Sbjct: 317 INACSDLGAAWEGKQVHDYLLKLGFES-QIYVMTALVDMYAKCSSIVDARKGFD--YLQE 373
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
++V WT++I G+ +G ++A+ + RM+ G+ PN
Sbjct: 374 PDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPN 410
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/197 (29%), Positives = 95/197 (48%), Gaps = 22/197 (11%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L + T + +++ C +L+ G Q+HA K GF V + +AL MY G LKD +
Sbjct: 408 LPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTL 467
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F +P R++++WN +I+GL S+ EAL LF M E T+P +T +
Sbjct: 468 VFRRMPARDVISWNAMISGL----------SQNGCGKEALELFEEM-QLEGTKPDYVTFV 516
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKR-GFNAF--DIHVSN--CLIDTYAKCGCIFSASKLF 195
+L A G V G+G R F+ F D V + C++D ++ G + A +
Sbjct: 517 NILSACSHMGLVE-----RGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFT 571
Query: 196 EDTSVDRKNLVSWTTII 212
E ++D + W I+
Sbjct: 572 ESATIDH-GMCLWRIIL 587
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 96/193 (49%), Gaps = 17/193 (8%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G LHA K S VY+ +L ++Y L+++ +F+ + +++V+WN
Sbjct: 25 GKALHAQIIKSS-SSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNC------- 76
Query: 103 WTGIIDGYSRM--NRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHG 160
II+GYS+ + S+ + LF+RM A E T P+ T V A + +L H
Sbjct: 77 ---IINGYSQHGPSGSSHVMELFQRMRA-ENTAPNAHTFAGVFTAASTLVDAAGGRLAHA 132
Query: 161 YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGM 220
K + D+ V + L++ Y K G A K+F+ ++ +N VSW T+ISG+A +
Sbjct: 133 VAIKMD-SCRDVFVGSSLMNMYCKAGLTPEARKVFD--TMPERNSVSWATMISGYASQKL 189
Query: 221 GKEAVENFERMQK 233
EA+ F M++
Sbjct: 190 AAEALGLFRLMRR 202
>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 629
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 157/292 (53%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F++S +++ C LS P G Q+++ K+G S V +L MY G ++D+ K F
Sbjct: 155 NHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAF 214
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D L E+NLV++N I+DGY++ +S EA LF +A S T ++
Sbjct: 215 DILFEKNLVSYN----------AIVDGYAKNLKSEEAFLLFNEIADTGIG-ISAFTFASL 263
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L G + + IHG K G+ + + N LI Y++CG I +A ++F + ++
Sbjct: 264 LSGAASIGAMGKGEQIHGRLLKGGYKSNQC-ICNALISMYSRCGNIEAAFQVFNE--MED 320
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+N++SWT++I+GFA HG A+E F +M + G KPN + EG K
Sbjct: 321 RNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKH 380
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ M +E ++P ++HY C++D+L R+G L +A E + +P + + +VWRT
Sbjct: 381 FNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP-LMADALVWRT 431
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 107/217 (49%), Gaps = 16/217 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL---GFLKDSS 79
D FTYS ++ C L LG QLH+ ++G V V +L DMY G + DS
Sbjct: 50 DRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSR 109
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
K+F+++PE N+++W IIT + +G D EA+ LF +M + + P+ +
Sbjct: 110 KVFEQMPEHNVMSWTAIITAYAQ-SGECD--------KEAIELFCKMIS-GHIRPNHFSF 159
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+VL A + + ++ Y K G + + V N LI YA+ G + A K F+
Sbjct: 160 SSVLKACGNLSDPYTGEQVYSYAVKLGIASVNC-VGNSLISMYARSGRMEDARKAFD--I 216
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
+ KNLVS+ I+ G+A + +EA F + G+
Sbjct: 217 LFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGI 253
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 107/231 (46%), Gaps = 46/231 (19%)
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
K+FD++PERNLVTW ++IT ++++ + +A+ LF M Y P T
Sbjct: 6 KVFDKMPERNLVTWTLMIT----------RFAQLGCARDAIDLFLDMELSGYV-PDRFTY 54
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC---GCIFSASKLFE 196
+VL A + G + + +H + G A D+ V L+D YAKC G + + K+FE
Sbjct: 55 SSVLSACTELGLLALGKQLHSRVIRLGL-ALDVCVGCSLVDMYAKCAADGSVDDSRKVFE 113
Query: 197 DTSVDRKNLVSWTTIISGFAMHG-MGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKM 255
+ N++SWT II+ +A G KEA+E F +M ++PN F +
Sbjct: 114 --QMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHF---------SFSSV 162
Query: 256 VEECEVLPD---------------IKHYGC----LIDILERAGRLEQAEEV 287
++ C L D I C LI + R+GR+E A +
Sbjct: 163 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKA 213
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 17/207 (8%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
+FT++ L+ ++ G Q+H K G++S+ + AL MY G ++ + ++F+
Sbjct: 257 AFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFN 316
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
E+ +RN+++W +ITG K G+ + AL +F +M T+P+EIT +AVL
Sbjct: 317 EMEDRNVISWTSMITGFAK-----HGF-----ATRALEMFHKMLETG-TKPNEITYVAVL 365
Query: 144 PAIWKNGEVRNCQL-IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
A G + Q + ++ G H + C++D + G + A + +
Sbjct: 366 SACSHVGMISEGQKHFNSMYKEHGIVPRMEHYA-CMVDLLGRSGLLVEAMEFINSMPLMA 424
Query: 203 KNLVSWTTIISGFAMHG---MGKEAVE 226
LV W T++ +HG +G+ A E
Sbjct: 425 DALV-WRTLLGACRVHGNTELGRHAAE 450
>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 157/292 (53%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F++S +++ C LS P G Q+++ K+G S V +L MY G ++D+ K F
Sbjct: 160 NHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAF 219
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D L E+NLV++N I+DGY++ +S EA LF +A S T ++
Sbjct: 220 DILFEKNLVSYN----------AIVDGYAKNLKSEEAFLLFNEIADTGIG-ISAFTFASL 268
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L G + + IHG K G+ + + N LI Y++CG I +A ++F + ++
Sbjct: 269 LSGAASIGAMGKGEQIHGRLLKGGYKSNQC-ICNALISMYSRCGNIEAAFQVFNE--MED 325
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+N++SWT++I+GFA HG A+E F +M + G KPN + EG K
Sbjct: 326 RNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKH 385
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ M +E ++P ++HY C++D+L R+G L +A E + +P + + +VWRT
Sbjct: 386 FNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP-LMADALVWRT 436
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 107/217 (49%), Gaps = 16/217 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL---GFLKDSS 79
D FTYS ++ C L LG QLH+ ++G V V +L DMY G + DS
Sbjct: 55 DRFTYSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSR 114
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
K+F+++PE N+++W IIT + +G D EA+ LF +M + + P+ +
Sbjct: 115 KVFEQMPEHNVMSWTAIITAYAQ-SGECD--------KEAIELFCKMIS-GHIRPNHFSF 164
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+VL A + + ++ Y K G + + V N LI YA+ G + A K F+
Sbjct: 165 SSVLKACGNLSDPYTGEQVYSYAVKLGIASVNC-VGNSLISMYARSGRMEDARKAFD--I 221
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
+ KNLVS+ I+ G+A + +EA F + G+
Sbjct: 222 LFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGI 258
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 107/231 (46%), Gaps = 46/231 (19%)
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
K+FD++PERNLVTW ++IT ++++ + +A+ LF M Y P T
Sbjct: 11 KVFDKMPERNLVTWTLMIT----------RFAQLGCARDAIDLFLDMELSGYV-PDRFTY 59
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC---GCIFSASKLFE 196
+VL A + G + + +H + G A D+ V L+D YAKC G + + K+FE
Sbjct: 60 SSVLSACTELGLLALGKQLHSRVIRLGL-ALDVCVGCSLVDMYAKCAADGSVDDSRKVFE 118
Query: 197 DTSVDRKNLVSWTTIISGFAMHG-MGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKM 255
+ N++SWT II+ +A G KEA+E F +M ++PN F +
Sbjct: 119 --QMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHF---------SFSSV 167
Query: 256 VEECEVLPD---------------IKHYGC----LIDILERAGRLEQAEEV 287
++ C L D I C LI + R+GR+E A +
Sbjct: 168 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKA 218
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 17/207 (8%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
+FT++ L+ ++ G Q+H K G++S+ + AL MY G ++ + ++F+
Sbjct: 262 AFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFN 321
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
E+ +RN+++W +ITG K G+ + AL +F +M T+P+EIT +AVL
Sbjct: 322 EMEDRNVISWTSMITGFAK-----HGF-----ATRALEMFHKMLETG-TKPNEITYVAVL 370
Query: 144 PAIWKNGEVRNCQL-IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
A G + Q + ++ G H + C++D + G + A + +
Sbjct: 371 SACSHVGMISEGQKHFNSMYKEHGIVPRMEHYA-CMVDLLGRSGLLVEAMEFINSMPLMA 429
Query: 203 KNLVSWTTIISGFAMHG---MGKEAVE 226
LV W T++ +HG +G+ A E
Sbjct: 430 DALV-WRTLLGACRVHGNTELGRHAAE 455
>gi|225453406|ref|XP_002271824.1| PREDICTED: pentatricopeptide repeat-containing protein At2g44880
[Vitis vinifera]
gi|297734603|emb|CBI16654.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 139/266 (52%), Gaps = 36/266 (13%)
Query: 67 DMYVSLGFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTG 105
D YV LG + + KLFDE+PER++V+W ++I G L W
Sbjct: 193 DAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDSARSLFDAMPEKNLFSWNA 252
Query: 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
+I GY + + EAL LF M + EP E+TI++VLPAI G + +H + ++
Sbjct: 253 MISGYRQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIADLGALDLGGWVHRFVRRK 312
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225
+ +V LID YAKCG I + +F++ + K SW +I+ FA++G KEA+
Sbjct: 313 KLDRA-TNVGTALIDMYAKCGEIVKSRGVFDN--MPEKETASWNALINAFAINGRAKEAL 369
Query: 226 ENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDI 274
F M G PN IG EEG ++F K +EE + P I+HYGC++D+
Sbjct: 370 GLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWF-KAMEEFGLTPKIEHYGCMVDL 428
Query: 275 LERAGRLEQAEEVASGIPSQITNVVV 300
L RAG L++AE++ +P + +++
Sbjct: 429 LGRAGCLQEAEKLMESMPYEANGIIL 454
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 131/297 (44%), Gaps = 50/297 (16%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
F +Y+ L++ ++ P DSFT+S L ++C G ++H+ VGF +Y
Sbjct: 72 FALYRDLRR-----NTSFTP--DSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLDLY 124
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
TAL DMY G + + KLFDE+ +R+ V+ WT +I GY R + A
Sbjct: 125 AATALVDMYAKFGKMDCARKLFDEMIDRSQVS----------WTALIGGYVRSGDMDNAG 174
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LF +M E ++ A K G++ + + + +R ++ I +I
Sbjct: 175 KLFDQM-----IEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTI-----MIY 224
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK-VGLKPN 239
Y+ G + SA LF+ ++ KNL SW +ISG+ + EA++ F MQ L+P+
Sbjct: 225 GYSSNGNLDSARSLFD--AMPEKNLFSWNAMISGYRQNKQPYEALKLFHEMQSTTSLEPD 282
Query: 240 RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCL-----IDILERAGRLEQAEEVASGI 291
V VLP I G L + R +L++A V + +
Sbjct: 283 E---------------VTIVSVLPAIADLGALDLGGWVHRFVRRKKLDRATNVGTAL 324
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 103/250 (41%), Gaps = 28/250 (11%)
Query: 4 YKQLQQIY--------IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF 55
Y+Q +Q Y + S + L P D T ++ L +LG +H +
Sbjct: 257 YRQNKQPYEALKLFHEMQSTTSLEP--DEVTIVSVLPAIADLGALDLGGWVHRFVRRKKL 314
Query: 56 QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNR 115
V TAL DMY G + S +FD +PE+ +WN +I I+G R
Sbjct: 315 DRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFA-----ING-----R 364
Query: 116 SNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS 175
+ EAL LF M + P+EIT++ VL A +G V + E+ G I
Sbjct: 365 AKEALGLFMEMNHKGFM-PNEITMIGVLSACNHSGLVEEGKRWFKAMEEFGLTP-KIEHY 422
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
C++D + GC+ A KL E + + I+S F + V ER+ K
Sbjct: 423 GCMVDLLGRAGCLQEAEKLMESMPYEANGI-----ILSSFLFACGYSKDVARAERVLKEA 477
Query: 236 LKPNRSWRIG 245
+K +W G
Sbjct: 478 IKM-EAWNDG 486
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 105/262 (40%), Gaps = 52/262 (19%)
Query: 40 PNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG 99
PNL T+ A S + L +Y L + + ++FD P R+ + +
Sbjct: 10 PNLFTKFIATCSSIAL---------LAPLYDPLAGIVHARRMFDHRPHRD----DAFLC- 55
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
+I Y M + +E+ AL+R + P T + + N + Q IH
Sbjct: 56 ----NSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSCALNMAIWEGQEIH 111
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
+ GF D++ + L+D YAK G + A KLF D +DR VSWT +I G+ G
Sbjct: 112 SHVVAVGF-CLDLYAATALVDMYAKFGKMDCARKLF-DEMIDRSQ-VSWTALIGGYVRSG 168
Query: 220 MGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
M G K FD+M+E+ D + +ID + G
Sbjct: 169 ----------DMDNAG--------------KLFDQMIEK-----DSAAFNTMIDAYVKLG 199
Query: 280 RLEQAEEVASGIPSQITNVVVW 301
+ A ++ +P + +VV W
Sbjct: 200 DMCSARKLFDEMPER--SVVSW 219
>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
Length = 886
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 102/321 (31%), Positives = 163/321 (50%), Gaps = 45/321 (14%)
Query: 8 QQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQS---------- 57
QQ+ + P +S T L+ C +L + G ++HA K S
Sbjct: 384 QQMILDGSEP-----NSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGD 438
Query: 58 --HVYVNTALGDMYVSLGFLKDSSKLFDELP--ERNLVTWNVIITGLVKWTGIIDGYSRM 113
+ V AL DMY K + +FD +P ERN+VTW V+I GY++
Sbjct: 439 GEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMI----------GGYAQY 488
Query: 114 NRSNEALALFRRMAACEYT-EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDI 172
SN+AL +F M + Y P+ TI +L A +R + IH Y + +
Sbjct: 489 GDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSV 548
Query: 173 H-VSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
+ V+NCLID Y+KCG + +A +F+ S+ ++N VSWT+++SG+ MHG GKEA++ F++M
Sbjct: 549 YFVANCLIDMYSKCGDVDTARNVFD--SMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKM 606
Query: 232 QKVGLKPN-----------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGR 280
QK G P+ + ++GL +FD M + +V+ +HY C+ID+L R GR
Sbjct: 607 QKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGR 666
Query: 281 LEQAEEVASGIPSQITNVVVW 301
L++A + +P + + V+W
Sbjct: 667 LDKAWKTIQEMPME-PSAVIW 686
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 108/216 (50%), Gaps = 15/216 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT + ++ C L G LH + GF+S+V+V AL MY G L+D+S +F
Sbjct: 148 DHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVF 207
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE-----I 137
DE+ + I ++ W I+ + + + AL LF M+ + + + I
Sbjct: 208 DEITRKG-------IDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDII 260
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
+I+ +LPA + + IH Y + G A D V N LIDTYAKCG + A K+F
Sbjct: 261 SIVNILPACASLKALPQIKEIHSYAIRNGTFA-DAFVCNALIDTYAKCGSMNDAVKVF-- 317
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
++ K++VSW +++G+ G A E FE M+K
Sbjct: 318 NVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRK 353
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 85/186 (45%), Gaps = 22/186 (11%)
Query: 57 SHVYVN-----TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYS 111
SH YV+ T + Y++ G KD+ + + + V WN+++ +K G +D
Sbjct: 76 SHSYVSPKSLGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIK-EGHLD--- 131
Query: 112 RMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD 171
A+ + RM T+P T+ L A + + +HG GF + +
Sbjct: 132 ------RAIGVSCRMLRAG-TKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFES-N 183
Query: 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK---NLVSWTTIISGFAMHGMGKEAVENF 228
+ V N L+ Y++CG + AS +F++ + RK +++SW +I++ + A+E F
Sbjct: 184 VFVCNALVAMYSRCGSLEDASLVFDE--ITRKGIDDVISWNSIVAAHVKGSNPRTALELF 241
Query: 229 ERMQKV 234
M +
Sbjct: 242 SEMSMI 247
>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 164/359 (45%), Gaps = 67/359 (18%)
Query: 5 KQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTA 64
K + IY + + + FTY L + C G Q+H K G S V++ +A
Sbjct: 113 KLFKAIYFYGRMVIDARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHIKSA 172
Query: 65 LGDMYVSLGFLKDSSK------------------------------LFDELPERNLVTWN 94
MY S G L+D+ K LF ++P +N+ +WN
Sbjct: 173 GIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWN 232
Query: 95 VIITGLVK---------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTE 133
V+I GL K W+ ++DGY R EAL +F++M E T
Sbjct: 233 VMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQR-EETR 291
Query: 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASK 193
P + +VL A G + + +H Y KR D + L+D YAKCG + +
Sbjct: 292 PGRFILSSVLAACSNIGAIDQGRWVHAY-LKRNSIKLDAVLGTALLDMYAKCGRLDMGWE 350
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-------- 245
+FE+ + + + +W +I G A+HG ++A+E F ++Q+ +KPN +G
Sbjct: 351 VFEE--MKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHA 408
Query: 246 ---EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
++GL+ F M E V P+++HYGC++D+L R+G +AE++ + +P + N VW
Sbjct: 409 GFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMK-PNAAVW 466
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 77/280 (27%), Positives = 124/280 (44%), Gaps = 48/280 (17%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVSLGF--LKD 77
LFDS ++ +L Y TQLH + + G FQ H YV+ AL Y + F
Sbjct: 37 LFDS-------KSITSLQYL---TQLHGLVLRSGHFQDH-YVSGALLKCYANPHFSNFDF 85
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
+ K+F +P N+ WN++I G ++ N+ +A+ + RM P++
Sbjct: 86 ALKVFSSIPNPNVFIWNIVIKGCLE----------NNKLFKAIYFYGRMVI--DARPNKF 133
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
T + A V+ + IHG+ K G + D+H+ + I YA G + A K+F
Sbjct: 134 TYPTLFKACSVAQAVQEGRQIHGHVVKHGIGS-DVHIKSAGIHMYASFGRLEDARKMFYS 192
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGL-------- 249
D +V W T+I G+ G+ + A F +M +K SW + GL
Sbjct: 193 GESD---VVCWNTMIDGYLKCGVLEAAKGLFAQMP---VKNIGSWNVMINGLAKGGNLGD 246
Query: 250 --KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
K FD+M E E+ + ++D AGR ++A E+
Sbjct: 247 ARKLFDEMSERDEI-----SWSSMVDGYISAGRYKEALEI 281
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 97/226 (42%), Gaps = 28/226 (12%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
F S ++ C + + G +HA + + + TAL DMY G L ++F+E
Sbjct: 295 FILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEE 354
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ ER + TWN +I GL I G R+ +AL LF ++ +P+ IT++ VL
Sbjct: 355 MKEREIFTWNAMIGGLA-----IHG-----RAEDALELFSKLQEGR-MKPNGITLVGVLT 403
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN--CLIDTYAKCGCIFSASKLFEDTSVDR 202
A G V I + R F D + + C++D + G A L + +
Sbjct: 404 ACAHAGFVDKGLRI--FQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPM-K 460
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-----LKPNRSWR 243
N W ++ +HG NF+ ++VG L+P S R
Sbjct: 461 PNAAVWGALLGACRIHG-------NFDLAERVGKILLELEPQNSGR 499
>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
Length = 694
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 154/292 (52%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ C LG +H+ + GF S++ + AL D+Y G ++ + +LF
Sbjct: 221 DESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELF 280
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D L +++++WN +I GY+ MN EAL LF+ M T P+++T+L++
Sbjct: 281 DGLWNKDVISWNTLI----------GGYTHMNLYKEALLLFQEMLRSGET-PNDVTMLSI 329
Query: 143 LPAIWKNGEVRNCQLIHGYGEKR--GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
LPA G + + IH Y K+ G + LID YAKCG I +A ++F D+S+
Sbjct: 330 LPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVF-DSSM 388
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
++L +W +ISGFAMHG A + F RM+ G++P+ +G + G
Sbjct: 389 SNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGR 448
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F M E+ P ++HYGC+ID+L +G ++AEE+ + +P + + V+W
Sbjct: 449 NIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPME-PDGVIW 499
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 121/240 (50%), Gaps = 24/240 (10%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L DS+T+ FL+++C G Q+H K+GF +YV+T+L MY G L+D+ K
Sbjct: 86 LPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARK 145
Query: 81 LFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEA 119
+FD R++V++ +I G +V W +I GY EA
Sbjct: 146 VFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEA 205
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
L LF+ M P E T++ V+ A ++ + + +H + GF A ++ + N LI
Sbjct: 206 LELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGF-ASNLKIVNALI 264
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D Y+K G + +A +LF+ + K+++SW T+I G+ + KEA+ F+ M + G PN
Sbjct: 265 DLYSKFGEVETACELFD--GLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 322
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 72/292 (24%), Positives = 120/292 (41%), Gaps = 61/292 (20%)
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD + E NL+ WN + G++ + AL L+ M + P T
Sbjct: 45 VFDTIQEPNLLIWNTMFR----------GHALSSDPVSALKLYLVMISLGLL-PDSYTFP 93
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS- 199
+L + K+ + Q IHG+ K GF+ DI+V LI YA+ G + A K+F+ +S
Sbjct: 94 FLLKSCAKSKIRKEGQQIHGHVLKLGFD-LDIYVHTSLISMYAQNGRLEDARKVFDISSH 152
Query: 200 ----------------------------VDRKNLVSWTTIISGFAMHGMGKEAVENF-ER 230
+ K++VSW +ISG+ G KEA+E F E
Sbjct: 153 RDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEM 212
Query: 231 MQKVGLKPNRSWRI----------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGR 280
M ++P+ S + E + + + ++K LID+ + G
Sbjct: 213 MMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGE 272
Query: 281 LEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAAL 332
+E A E+ G+ ++ +V+ W T LI Y + + L + L F L
Sbjct: 273 VETACELFDGLWNK--DVISWNT-----LIGGY--THMNLYKEALLLFQEML 315
>gi|147780613|emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
Length = 654
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/273 (34%), Positives = 143/273 (52%), Gaps = 25/273 (9%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
FT+ +I C L G Q+H K+GF+S +YV TAL DMY + D+ K FD
Sbjct: 311 FTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDY 370
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
L E ++V WT +I GY + + +AL+L+ RM E P+E+T+ +VL
Sbjct: 371 LQEPDIVL----------WTSMIGGYVQNGENEDALSLYGRMEM-EGILPNELTMASVLK 419
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A + + IH K GF ++ + + L YAKCGC+ + +F + ++
Sbjct: 420 ACSSLAALEQGKQIHARTVKYGF-GLEVPIGSALSTMYAKCGCLKDGTLVFR--RMPARD 476
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKFFD 253
++SW +ISG + +G GKEA+E FE MQ G KP+ + E G +F
Sbjct: 477 VISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFR 536
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
M +E + P ++HY C++DIL RAG+L++A E
Sbjct: 537 MMFDEFGMDPRVEHYACMVDILSRAGKLKEAIE 569
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 109/217 (50%), Gaps = 14/217 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++ T++ + TL G HAV K+ V+V ++L +MY G ++ K+F
Sbjct: 107 NAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVF 166
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +PERN V+W +I+ GY+ + EAL LFR M E E +E +V
Sbjct: 167 DTMPERNSVSWATMIS----------GYASQKLAAEALGLFRLMRREEEGE-NEFVFTSV 215
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A+ V N + IH K G + + V N L+ YAKCG + A + FE +S
Sbjct: 216 LSALTLPELVNNGKQIHCIAVKNGLLSI-VSVGNALVTMYAKCGSLDDALQTFETSS--D 272
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
KN ++W+ +I+G A G +A++ F M G++P+
Sbjct: 273 KNSITWSAMITGXAQSGDSDKALKLFSSMHLSGIRPS 309
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 106/217 (48%), Gaps = 14/217 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F ++ ++ N G Q+H + K G S V V AL MY G L D+ + F
Sbjct: 208 NEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLDDALQTF 267
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ ++N +TW+ +IT G ++ S++AL LF M PSE T + V
Sbjct: 268 ETSSDKNSITWSAMIT----------GXAQSGDSDKALKLFSSM-HLSGIRPSEFTFVGV 316
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A G + +H Y K GF + I+V L+D YAKC I A K F+ +
Sbjct: 317 INACSDLGAAWEGKQVHDYLLKLGFES-QIYVMTALVDMYAKCSSIVDARKGFD--YLQE 373
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
++V WT++I G+ +G ++A+ + RM+ G+ PN
Sbjct: 374 PDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPN 410
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 109/240 (45%), Gaps = 41/240 (17%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L + T + +++ C +L+ G Q+HA K GF V + +AL MY G LKD +
Sbjct: 408 LPNELTMASVLKACSSLAALEQGKQIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTL 467
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F +P R++++WN +I+GL S+ EAL LF M E T+P +T +
Sbjct: 468 VFRRMPARDVISWNAMISGL----------SQNGCGKEALELFEEM-QLEGTKPDYVTFV 516
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKR-GFNAF--DIHVSN--CLIDTYAKCGCIFSASKLF 195
+L A G V G+G R F+ F D V + C++D ++ G + A +
Sbjct: 517 NILSACSHMGLVE-----RGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFT 571
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK---VGLKPNRSWRIGEEGLKFF 252
E ++D HGM E VE RM K V +P SW + G+ F
Sbjct: 572 ESATID----------------HGMW-EDVERVRRMMKLRGVSKEPGCSWIELKSGVHVF 614
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 96/193 (49%), Gaps = 17/193 (8%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G LHA K S VY+ +L ++Y L+++ +F+ + +++V+WN
Sbjct: 25 GKALHAQIIKSS-SSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNC------- 76
Query: 103 WTGIIDGYSRM--NRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHG 160
II+GYS+ + S+ + LF+RM A E T P+ T V A + +L H
Sbjct: 77 ---IINGYSQHGPSGSSHVMELFQRMRA-ENTAPNAHTFAGVFTAASTLVDAAGGRLAHA 132
Query: 161 YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGM 220
K + D+ V + L++ Y K G A K+F+ ++ +N VSW T+ISG+A +
Sbjct: 133 VAIKMD-SCRDVFVGSSLMNMYCKAGLTPEARKVFD--TMPERNSVSWATMISGYASQKL 189
Query: 221 GKEAVENFERMQK 233
EA+ F M++
Sbjct: 190 AAEALGLFRLMRR 202
>gi|356565111|ref|XP_003550788.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 478
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 108/372 (29%), Positives = 180/372 (48%), Gaps = 61/372 (16%)
Query: 3 VYKQLQQIYIHSHSPLPPLF------------DSFTYSFLIRTCVTLSYPNLGTQLHAVF 50
V+ + + Y SH+P + D FT+S L+ C G Q+HA
Sbjct: 8 VWNHVIRGYARSHTPWKAVECYTHMVSSKAEPDGFTHSSLLSACARGGLVKEGEQVHATV 67
Query: 51 SKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK-------- 102
G+ S+V+V+T+L Y G ++ + +FD +P+R++V+WN ++ G V+
Sbjct: 68 LVKGYCSNVFVDTSLITFYAGRGGVERARHVFDGMPQRSVVSWNSMLAGYVRCADFDGAR 127
Query: 103 -------------WTGIIDGYSRMNRSNEALALFRRM-AACEYTEPSEITILAVLPAIWK 148
WT ++ G +R +S +AL LF M AC E ++ ++A L A +
Sbjct: 128 RVFDVMPCRNVVSWTTMVAGCARNGKSRQALLLFGEMRRAC--VELDQVALVAALSACAE 185
Query: 149 NGEVRNCQLIHGYGEK----RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
G+++ + IH Y ++ R + + ++N LI YA CG + A ++F + RK+
Sbjct: 186 LGDLKLGRWIHWYVQQRFVARNWQQPSVRLNNALIHMYASCGILHEAYQVF--VKMPRKS 243
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLK-----PNRSWRIG-----------EEG 248
VSWT++I FA G+GKEA++ F+ M G+K P+ IG +EG
Sbjct: 244 TVSWTSMIMAFAKQGLGKEALDLFKTMLSDGVKVDGVRPDEITFIGVLCACSHAGFVDEG 303
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT--GFL 306
+ F M + P I+HYGC++D+L RAG L++A + +P N +W G
Sbjct: 304 HQIFASMKHTWGISPSIEHYGCMVDLLSRAGLLDEARGLIETMPLN-PNDAIWGALLGGC 362
Query: 307 RLLINSYFFSPI 318
R+ NS S +
Sbjct: 363 RIHRNSELASQV 374
>gi|224126329|ref|XP_002329527.1| predicted protein [Populus trichocarpa]
gi|222870236|gb|EEF07367.1| predicted protein [Populus trichocarpa]
Length = 377
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/271 (32%), Positives = 143/271 (52%), Gaps = 36/271 (13%)
Query: 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK---------------------WTGI 106
MY G L + K+FDE+P +N++ W +++G V WT +
Sbjct: 1 MYCKCGCLSVARKIFDEMPHKNVICWTSMVSGYVNYGELDKARELFERSPVKDVVLWTAM 60
Query: 107 IDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRG 166
I+GY + N +EA+ALF+ M + +P + ++A+L + G + IHGY +++G
Sbjct: 61 INGYVQFNHFDEAVALFQEMQI-QRVKPDKFVLVALLTGCAQMGALEQGTWIHGYIDEKG 119
Query: 167 FNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVE 226
D V LI+ Y+KCGCI A ++F + K+ +WT+II G AM+G +A+E
Sbjct: 120 I-PVDAVVGTSLIEMYSKCGCIEKALRIF--CGLREKDTATWTSIICGLAMNGKTSKALE 176
Query: 227 NFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDIL 275
F +M++V P+ IG EEG +FF+ M + P ++HYGCLID+L
Sbjct: 177 LFSKMKQVEAIPDEVTFIGVLSACSHGGLVEEGREFFNSMTSIYNIEPKLEHYGCLIDLL 236
Query: 276 ERAGRLEQAEEVASGIPSQITNVVVWRTGFL 306
RAG+L++AEE+ I + ++V G L
Sbjct: 237 GRAGQLDEAEELIKKIVNANNEIIVPLYGSL 267
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 82/199 (41%), Gaps = 36/199 (18%)
Query: 8 QQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGD 67
Q++ I P D F L+ C + GT +H + G V T+L +
Sbjct: 78 QEMQIQRVKP-----DKFVLVALLTGCAQMGALEQGTWIHGYIDEKGIPVDAVVGTSLIE 132
Query: 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMN-RSNEALALFRRM 126
MY G ++ + ++F L E++ TW II GL MN ++++AL LF +M
Sbjct: 133 MYSKCGCIEKALRIFCGLREKDTATWTSIICGLA-----------MNGKTSKALELFSKM 181
Query: 127 AACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF-----NAFDIHVS----NC 177
E P E+T + VL A G V E R F + ++I C
Sbjct: 182 KQVEAI-PDEVTFIGVLSACSHGGLVE---------EGREFFNSMTSIYNIEPKLEHYGC 231
Query: 178 LIDTYAKCGCIFSASKLFE 196
LID + G + A +L +
Sbjct: 232 LIDLLGRAGQLDEAEELIK 250
>gi|147841473|emb|CAN62101.1| hypothetical protein VITISV_033310 [Vitis vinifera]
Length = 396
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/292 (29%), Positives = 161/292 (55%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
B T + ++ C L +G ++ + S++ V+TA+ +MYV G + D +F
Sbjct: 5 BEITLATVLSICAKLGDLEMGLRIKKLXDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVF 64
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + R++V W+ +I GY++ RSNEAL LF M + + +P+++T+++V
Sbjct: 65 DHMARRDVVXWSAMIA----------GYAQNGRSNEALELFEXMKSAQ-IKPNDVTLVSV 113
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + G V + I Y E RG + +++V++ L+ Y+KCG I A ++F+ + +
Sbjct: 114 LSACAQLGSVETGERIGSYVESRGLIS-NVYVASALLGMYSKCGNIIKARQIFD--KLPQ 170
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
++ V+W ++I G A++G ++A+ + RM+++ +KPN +G E GL+F
Sbjct: 171 RDNVTWNSMIMGLAINGFAEDAIALYNRMKEIEVKPNNITFVGLLTACTHAGHVELGLEF 230
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F M + + P+I+H+ C++D+ R+GRL A E + + NVV+W T
Sbjct: 231 FRSMRSDHNISPNIEHFACIVDLFCRSGRLIDAYEFICRMEVE-PNVVIWGT 281
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 93/197 (47%), Gaps = 14/197 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T ++ C L G ++ + G S+VYV +AL MY G + + ++F
Sbjct: 106 NDVTLVSVLSACAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIF 165
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D+LP+R+ VTWN +I GL I+G++ +A+AL+ RM E +P+ IT + +
Sbjct: 166 DKLPQRDNVTWNSMIMGLA-----INGFAE-----DAIALYNRMKEIE-VKPNNITFVGL 214
Query: 143 LPAIWKNGEVR-NCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G V + + H + C++D + + G + A + V+
Sbjct: 215 LTACTHAGHVELGLEFFRSMRSDHNISPNIEHFA-CIVDLFCRSGRLIDAYEFICRMEVE 273
Query: 202 RKNLVSWTTIISGFAMH 218
N+V W T++S +H
Sbjct: 274 -PNVVIWGTLLSASRIH 289
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 94/198 (47%), Gaps = 15/198 (7%)
Query: 133 EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSAS 192
EP EIT+ VL K G++ I + + + ++ VS +++ Y KCG +
Sbjct: 3 EPBEITLATVLSICAKLGDLEMGLRIKKLXDNKNLGS-NMIVSTAMLEMYVKCGAVDDGR 61
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---------SWR 243
+F+ + R+++V W+ +I+G+A +G EA+E FE M+ +KPN +
Sbjct: 62 LVFDHMA--RRDVVXWSAMIAGYAQNGRSNEALELFEXMKSAQIKPNDVTLVSVLSACAQ 119
Query: 244 IGE-EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
+G E + VE ++ ++ L+ + + G + +A ++ +P + + V W
Sbjct: 120 LGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQR--DNVTWN 177
Query: 303 TGFLRLLINSYFFSPITL 320
+ + L IN + I L
Sbjct: 178 SMIMGLAINGFAEDAIAL 195
>gi|225463123|ref|XP_002265412.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g34160-like [Vitis vinifera]
Length = 573
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 160/293 (54%), Gaps = 28/293 (9%)
Query: 23 DSFTYSF-LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D+ T+SF LI + L+ +Q+H+ + G + + + T L D Y G L + ++
Sbjct: 99 DALTFSFSLIASARALALSET-SQIHSHLLRRGCHADILLGTTLIDAYAKCGDLDSAQRV 157
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FDE+P R++ WN +I GL + + +S+EALALF RM A E + +EI++L
Sbjct: 158 FDEIPLRDVAAWNALIAGLAQGS----------KSSEALALFNRMRA-EGEKINEISVLG 206
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A + G +R + +H K + ++ V N +ID YAKCG ++F +
Sbjct: 207 ALAACSQLGALRAGEGVHACVRKMDLD-INVQVCNAVIDMYAKCGFADKGFRVFSTMTCG 265
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
K++V+W T+I FAMHG G A+E FE M K ++ + + EEG++
Sbjct: 266 -KSVVTWNTMIMAFAMHGDGCRALELFEEMGKTQVEMDSVTYLAVLCACNHAGLVEEGVR 324
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
FD+MV V ++KHYG ++D+L RAGRL +A + + +P + +VV+W++
Sbjct: 325 LFDEMVGR-GVNRNVKHYGSVVDLLGRAGRLGEAYRIINSMPI-VPDVVLWQS 375
>gi|356524477|ref|XP_003530855.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06145-like [Glycine max]
Length = 529
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 103/341 (30%), Positives = 161/341 (47%), Gaps = 68/341 (19%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTAL-------GDM-------- 68
S+++S LI+ C L G +H K GF SHV+V T L GD+
Sbjct: 76 SYSFSSLIKACTLLVDSAFGEAVHGHVWKHGFDSHVFVQTTLIEFYSTFGDVGGSRRVFD 135
Query: 69 ----------------YVSLGFLKDSSKLFDELPERNLVTWNVIITG------------- 99
+V G + + +LFDE+PE+N+ TWN +I G
Sbjct: 136 DMPERDVFAWTTMISAHVRDGDMASAGRLFDEMPEKNVATWNAMIDGYGKLGNAESAEFL 195
Query: 100 --------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGE 151
++ WT +++ YSR R E +ALF + + P E+T+ V+ A G
Sbjct: 196 FNQMPARDIISWTTMMNCYSRNKRYKEVIALFHDVID-KGMIPDEVTMTTVISACAHLGA 254
Query: 152 VRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTI 211
+ + +H Y +GF+ D+++ + LID YAKCG I A +F + KNL W I
Sbjct: 255 LALGKEVHLYLVLQGFD-LDVYIGSSLIDMYAKCGSIDMALLVF--YKLQTKNLFCWNCI 311
Query: 212 ISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECE 260
I G A HG +EA+ F M++ ++PN I EEG ++F MV++
Sbjct: 312 IDGLATHGYVEEALRMFGEMERKRIRPNAVTFISILTACTHAGFIEEGRRWFMSMVQDYC 371
Query: 261 VLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ P ++HYGC++D+L +AG LE A E+ + + N +W
Sbjct: 372 IAPQVEHYGCMVDLLSKAGLLEDALEMIRNMTVE-PNSFIW 411
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 12/196 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + +I C L LG ++H GF VY+ ++L DMY G + + +F
Sbjct: 238 DEVTMTTVISACAHLGALALGKEVHLYLVLQGFDLDVYIGSSLIDMYAKCGSIDMALLVF 297
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+L +NL WN II GL GY EAL +F M + P+ +T +++
Sbjct: 298 YKLQTKNLFCWNCIIDGLAT-----HGYVE-----EALRMFGEMER-KRIRPNAVTFISI 346
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + + + A + C++D +K G + A ++ + +V+
Sbjct: 347 LTACTHAGFIEEGRRWFMSMVQDYCIAPQVEHYGCMVDLLSKAGLLEDALEMIRNMTVEP 406
Query: 203 KNLVSWTTIISGFAMH 218
+ + W +++G +H
Sbjct: 407 NSFI-WGALLNGCKLH 421
Score = 40.8 bits (94), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 86/198 (43%), Gaps = 49/198 (24%)
Query: 121 ALFRRMAACEYTEPSEITILA-----VLPAIWK-NGEVRNCQL---------IHGYGEKR 165
AL R C Y+E + + + V+P + + ++ C L +HG+ K
Sbjct: 46 ALIRGCVHCCYSEQALVHYMHMLRNNVMPTSYSFSSLIKACTLLVDSAFGEAVHGHVWKH 105
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225
GF++ + V LI+ Y+ G + + ++F+D + +++ +WTT+IS G
Sbjct: 106 GFDSH-VFVQTTLIEFYSTFGDVGGSRRVFDD--MPERDVFAWTTMISAHVRDG------ 156
Query: 226 ENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAE 285
M G + FD+M E+ ++ + +ID + G E AE
Sbjct: 157 ----DMASAG--------------RLFDEMPEK-----NVATWNAMIDGYGKLGNAESAE 193
Query: 286 EVASGIPSQITNVVVWRT 303
+ + +P++ +++ W T
Sbjct: 194 FLFNQMPAR--DIISWTT 209
>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial-like [Vitis vinifera]
Length = 1053
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 166/292 (56%), Gaps = 28/292 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT++ ++ +C + S LG Q+H++ K F+SH++V ++L DMY G + ++ ++F
Sbjct: 577 NEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVF 636
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D LPER++V+ T II GY+++ EAL LFRR+ E + +T +V
Sbjct: 637 DGLPERDVVS----------CTAIISGYAQLGLDEEALDLFRRLQR-EGMRSNYVTYASV 685
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A+ + + + +H + R F + + N LID Y+KCG + + ++F+ S+
Sbjct: 686 LTALSGLAALDHGRQVHSH-VLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFD--SMPE 742
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-LKPN-----------RSWRIGEEGLK 250
+ ++SW ++ G++ HG+G+EAVE F+ M++ +KP+ + + GL+
Sbjct: 743 RTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLE 802
Query: 251 FFDKMVEECEVL-PDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F +MV + + P+I+HYGC++D+ RAGR+E+A E +P + T +W
Sbjct: 803 IFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPT-AAIW 853
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 138/285 (48%), Gaps = 26/285 (9%)
Query: 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP 86
Y ++ C++ + G ++HA K ++ VY+ T L +Y L D+ ++ DE+P
Sbjct: 480 YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMP 539
Query: 87 ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI 146
ERN+V+ WT +I GYS+ ++EAL LF M T P+E T VL +
Sbjct: 540 ERNVVS----------WTAMISGYSQRGYASEALHLFVEMLM-SGTAPNEFTFATVLTSC 588
Query: 147 WKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLV 206
+ + + IH K F + I V + L+D YAK G I A ++F+ + +++V
Sbjct: 589 TSSSGFQLGRQIHSLVIKTSFESH-IFVGSSLLDMYAKAGKICEARRVFD--GLPERDVV 645
Query: 207 SWTTIISGFAMHGMGKEAVENFERMQKVGLKPN----RSWRIGEEGLKFFD--KMVEECE 260
S T IISG+A G+ +EA++ F R+Q+ G++ N S GL D + V
Sbjct: 646 SCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHV 705
Query: 261 VLPDIKHY----GCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ + Y LID+ + G L + + +P + V+ W
Sbjct: 706 LRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPER--TVISW 748
>gi|449437638|ref|XP_004136598.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 564
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 92/297 (30%), Positives = 160/297 (53%), Gaps = 31/297 (10%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P+ +SFT +F+++ C ++ G Q+H+ K GF S ++V T+L + Y + +
Sbjct: 88 PVPNSFTLAFVLKACAIVTAFGEGLQVHSHVLKDGFGSSLFVQTSLVNFYGKCEEIGFAR 147
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
K+F+E+P RNLV WT +I G++R+ +EA+ LFR M +P +T+
Sbjct: 148 KVFEEMPVRNLVA----------WTAMISGHARVGAVDEAMELFREMQKAG-IQPDAMTL 196
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
++V+ A G + +H Y EK F D+ +S L+D YAKCGCI A ++F
Sbjct: 197 VSVVSACAVAGALDIGYWLHAYIEKY-FVLTDLELSTALVDMYAKCGCIERAKQVFVHMP 255
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
V K+ +W+++I GFA HG+ ++A++ F++M + + P+ + G
Sbjct: 256 V--KDTTAWSSMIMGFAYHGLAQDAIDAFQQMLETEVTPDHVTFLAVLSACAHGGLVSRG 313
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS--GIPSQITNVVVWRT 303
+F+ M+ E + P ++HYGC +D+L R+G +E+A + + IP N WR+
Sbjct: 314 RRFWSLML-EFGIEPSVEHYGCKVDLLCRSGLVEEAYRITTTMKIPP---NAATWRS 366
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 69/245 (28%), Positives = 119/245 (48%), Gaps = 42/245 (17%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNR-SNEALALFRRMAACEY 131
G + + +F ++P N+ +WN +I GYS+++ S E + LF+++ Y
Sbjct: 38 GNINYARSVFAQIPHPNIFSWN----------SLIKGYSQIHTLSKEPIFLFKKLTETGY 87
Query: 132 TEPSEITILAVLPAIWKNGEVRNCQLIHGYGE---------KRGFNAFDIHVSNCLIDTY 182
P+ T+ VL A C ++ +GE K GF + + V L++ Y
Sbjct: 88 PVPNSFTLAFVLKA---------CAIVTAFGEGLQVHSHVLKDGFGS-SLFVQTSLVNFY 137
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW 242
KC I A K+FE+ V +NLV+WT +ISG A G EA+E F MQK G++P+
Sbjct: 138 GKCEEIGFARKVFEEMPV--RNLVAWTAMISGHARVGAVDEAMELFREMQKAGIQPDAMT 195
Query: 243 RI---------GEEGLKFF-DKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+ G + ++ +E+ VL D++ L+D+ + G +E+A++V +P
Sbjct: 196 LVSVVSACAVAGALDIGYWLHAYIEKYFVLTDLELSTALVDMYAKCGCIERAKQVFVHMP 255
Query: 293 SQITN 297
+ T
Sbjct: 256 VKDTT 260
>gi|255586940|ref|XP_002534070.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223525897|gb|EEF28314.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/304 (31%), Positives = 154/304 (50%), Gaps = 38/304 (12%)
Query: 16 SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL 75
SP+ P TY + + L + G QLH K+G ++ ++ + MYV+ GF
Sbjct: 116 SPVQP--QRLTYPSVFKAFAQLDLASEGAQLHGKMIKLGLENDSFIRNTILFMYVNCGFT 173
Query: 76 KDSSKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMN 114
++ K+FD + ++V WN +I G+ K W +I GY R
Sbjct: 174 SEARKVFDRGMDFDIVAWNTMIMGVAKCGLVDESRRLFDKMSLRNAVSWNSMISGYVRNG 233
Query: 115 RSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHV 174
R +AL LF++M E EPSE T++++L A G +R + IH Y K+ F I V
Sbjct: 234 RFFDALELFQKMQV-ERIEPSEFTMVSLLNACACLGAIRQGEWIHDYMVKKKFELNPIVV 292
Query: 175 SNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
+ +ID Y+KCG I A ++F+ S R+ L W ++I G AM+G EA++ F +Q
Sbjct: 293 T-AIIDMYSKCGSIDKAVQVFQ--SAPRRGLSCWNSMILGLAMNGQENEALQLFSVLQSS 349
Query: 235 GLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQ 283
L+P+ I ++ +F M ++ ++ P IKH+ C++D+L RAG LE+
Sbjct: 350 DLRPDDVSFIAVLTACDHTGMVDKAKDYFLLMRDKYKIKPGIKHFSCMVDVLGRAGLLEE 409
Query: 284 AEEV 287
AEE+
Sbjct: 410 AEEL 413
>gi|413956916|gb|AFW89565.1| hypothetical protein ZEAMMB73_426720 [Zea mays]
Length = 537
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 164/346 (47%), Gaps = 70/346 (20%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS--- 79
D T+ F++R C + G Q+HA K G +S +V AL M+ +LG L ++
Sbjct: 114 DKRTFPFVLRACAAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALF 173
Query: 80 ----------------------------KLFDELPERNLVTWNVIITG------------ 99
+LFDE P ++LV+WNV+IT
Sbjct: 174 DGEAREDAVAWSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARE 233
Query: 100 ---------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
+V W +I GY R +A+ LF +M A +P +T+L++L A +G
Sbjct: 234 LFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMG-EKPDTVTMLSLLSACADSG 292
Query: 151 EVRNCQLIHGYGEKRGFNAFD--IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSW 208
++ + +HG+ R F+ + N LID YAKCG + SA ++F + KN+ +W
Sbjct: 293 DLDAGRRLHGFLSGR-FSRIGPTTALGNALIDMYAKCGSMTSALEVF--WLMQDKNVSTW 349
Query: 209 TTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVE 257
+II G A+HG E++ F +M + +KP+ + ++G ++F M +
Sbjct: 350 NSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQ 409
Query: 258 ECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ P+IKHYGC++D+L R G L++A E + + N V+WRT
Sbjct: 410 RYRIEPNIKHYGCMVDMLSRGGLLKEAFEFIGTMKIE-PNPVIWRT 454
>gi|242082594|ref|XP_002441722.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
gi|241942415|gb|EES15560.1| hypothetical protein SORBIDRAFT_08g001305 [Sorghum bicolor]
Length = 528
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 156/295 (52%), Gaps = 39/295 (13%)
Query: 42 LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV 101
+G +H + ++G V V AL DMY G + + K+FD + ++ VTW ++ G +
Sbjct: 131 VGRAVHGLIFRLGLDGEVVVGNALIDMYSQCGKFESAVKVFDRMSLKDEVTWGSMLHGYI 190
Query: 102 K---------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
K WT +I G+ + + AL LF RM E P+ +TI+
Sbjct: 191 KCAGVDSALSFFDQVPVRSVVAWTALITGHVQGRQPVRALELFGRMV-LEGHRPTHVTIV 249
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNA-FDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
VL A G + ++IHGYG K NA +I VSN L+D YAK G I A +F++
Sbjct: 250 GVLSACADIGALDLGRVIHGYGSK--CNASLNIIVSNALMDMYAKSGHIEMAFSVFQE-- 305
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
V K+ +WTT+IS + G GK+A+E F+ M + G+ PN + EEG
Sbjct: 306 VQSKDSFTWTTMISCCTVQGDGKKALELFQDMLRAGVVPNSVTFVSVLSACSHSGLIEEG 365
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++ FD+M + ++ P ++HYGC+ID+L R G LE+AE + + + + ++V+WR+
Sbjct: 366 IELFDRMRQLYKIDPLLEHYGCMIDLLGRGGLLEEAEALIADMNVE-PDIVIWRS 419
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 88/172 (51%), Gaps = 15/172 (8%)
Query: 45 QLHAVFSKVGFQSHVY-VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKW 103
++HA+ G H V+ + Y G + D+ KLFDE+P +L++ +
Sbjct: 32 RIHALAIAHGLHPHQQSVSCKIFRCYADFGRVADARKLFDEIPNPDLIS----------F 81
Query: 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGE 163
T ++ + +++ EA++LF R+ A + P ++ L A G+ + +HG
Sbjct: 82 TSLMSLHLQLDNQREAISLFARVVAAGH-RPDGFAVVGALSASSGAGDQVVGRAVHGLIF 140
Query: 164 KRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGF 215
+ G + ++ V N LID Y++CG SA K+F+ S+ K+ V+W +++ G+
Sbjct: 141 RLGLDG-EVVVGNALIDMYSQCGKFESAVKVFDRMSL--KDEVTWGSMLHGY 189
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 91/206 (44%), Gaps = 23/206 (11%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
++ C + +LG +H SK ++ V+ AL DMY G ++ + +F E+ ++
Sbjct: 251 VLSACADIGALDLGRVIHGYGSKCNASLNIIVSNALMDMYAKSGHIEMAFSVFQEVQSKD 310
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
TW +I+ + G + +AL LF+ M P+ +T ++VL A +
Sbjct: 311 SFTWTTMIS-----CCTVQGDGK-----KALELFQDMLRAGVV-PNSVTFVSVLSACSHS 359
Query: 150 GEVRNCQLIHGYGEKRGFNAFD--IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
G + + I + R D + C+ID + G + A L D +V+ ++V
Sbjct: 360 GLIE--EGIELFDRMRQLYKIDPLLEHYGCMIDLLGRGGLLEEAEALIADMNVE-PDIVI 416
Query: 208 WTTIISGFAMHG-------MGKEAVE 226
W +++S + G GKE V+
Sbjct: 417 WRSLLSACLVRGNNRLAEIAGKEIVK 442
>gi|147834049|emb|CAN70994.1| hypothetical protein VITISV_038698 [Vitis vinifera]
Length = 751
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 147/284 (51%), Gaps = 37/284 (13%)
Query: 49 VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG--------- 99
+F ++ + NT + D YV LG + + KLFDE+PER++V+W ++I G
Sbjct: 350 LFDQMIEKDSAAFNTMI-DAYVKLGDMCSARKLFDEMPERSVVSWTIMIYGYSSNGNLDS 408
Query: 100 ------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIW 147
L W +I GY + + EAL LF M + EP E+TI++VLPAI
Sbjct: 409 ARSLFDAMPEKNLFSWNAMISGYXQNKQPYEALKLFHEMQSTTSLEPDEVTIVSVLPAIA 468
Query: 148 KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
G + +H + ++ + +V LID YAKCG I + +F++ + K S
Sbjct: 469 DLGALDLGGWVHRFVRRKKLDRA-TNVGTALIDMYAKCGEIVKSRGVFDN--MPEKETAS 525
Query: 208 WTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMV 256
W +I+ FA++G KEA+ F M G PN IG EEG ++F K +
Sbjct: 526 WNALINAFAINGRAKEALGLFMEMNHKGFMPNEITMIGVLSACNHSGLVEEGKRWF-KAM 584
Query: 257 EECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
EE + P I+HYGC++D+L RAG L++AE++ +P + +++
Sbjct: 585 EEFGLTPKIEHYGCMVDLLGRAGCLQEAEKLMESMPYEANGIIL 628
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/240 (28%), Positives = 114/240 (47%), Gaps = 30/240 (12%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
F +Y+ L++ ++ P DSFT+S L ++C G ++H+ VGF +Y
Sbjct: 246 FALYRDLRR-----NTSFTP--DSFTFSVLAKSCALNMAIWEGQEIHSHVVAVGFCLDLY 298
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
TAL DMY G + + KLFDE+ +R+ V+ WT +I GY R + A
Sbjct: 299 AATALVDMYAKFGKMDCARKLFDEMIDRSQVS----------WTALIGGYVRSGDMDNAG 348
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LF +M E ++ A K G++ + + + +R ++ I +I
Sbjct: 349 KLFDQM-----IEKDSAAFNTMIDAYVKLGDMCSARKLFDEMPERSVVSWTI-----MIY 398
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK-VGLKPN 239
Y+ G + SA LF+ ++ KNL SW +ISG+ + EA++ F MQ L+P+
Sbjct: 399 GYSSNGNLDSARSLFD--AMPEKNLFSWNAMISGYXQNKQPYEALKLFHEMQSTTSLEPD 456
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 66/242 (27%), Positives = 99/242 (40%), Gaps = 27/242 (11%)
Query: 4 YKQLQQIY--------IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF 55
Y Q +Q Y + S + L P D T ++ L +LG +H +
Sbjct: 431 YXQNKQPYEALKLFHEMQSTTSLEP--DEVTIVSVLPAIADLGALDLGGWVHRFVRRKKL 488
Query: 56 QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNR 115
V TAL DMY G + S +FD +PE+ +WN +I I+G R
Sbjct: 489 DRATNVGTALIDMYAKCGEIVKSRGVFDNMPEKETASWNALINAFA-----ING-----R 538
Query: 116 SNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS 175
+ EAL LF M + P+EIT++ VL A +G V + E+ G I
Sbjct: 539 AKEALGLFMEMNHKGFM-PNEITMIGVLSACNHSGLVEEGKRWFKAMEEFGLTP-KIEHY 596
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
C++D + GC+ A KL E + + I+S F + V ER+ K
Sbjct: 597 GCMVDLLGRAGCLQEAEKLMESMPYEANGI-----ILSSFLFACGYSKDVARAERVLKEA 651
Query: 236 LK 237
+K
Sbjct: 652 IK 653
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 113/275 (41%), Gaps = 53/275 (19%)
Query: 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP 86
++F++R + + PNL T+ A S + L +Y L + + ++FD P
Sbjct: 172 HAFMLRNALE-TNPNLFTKFIATCSSIAL---------LAPLYDPLAGIVHARRMFDHRP 221
Query: 87 ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI 146
R+ + + +I Y M + +E+ AL+R + P T + +
Sbjct: 222 HRD----DAFLC-----NSMIKAYVGMRQYSESFALYRDLRRNTSFTPDSFTFSVLAKSC 272
Query: 147 WKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLV 206
N + Q IH + GF D++ + L+D YAK G + A KLF D +DR V
Sbjct: 273 ALNMAIWEGQEIHSHVVAVGF-CLDLYAATALVDMYAKFGKMDCARKLF-DEMIDRSQ-V 329
Query: 207 SWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIK 266
SWT +I G+ G M G K FD+M+E+ D
Sbjct: 330 SWTALIGGYVRSG----------DMDNAG--------------KLFDQMIEK-----DSA 360
Query: 267 HYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ +ID + G + A ++ +P + +VV W
Sbjct: 361 AFNTMIDAYVKLGDMCSARKLFDEMPER--SVVSW 393
>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
Length = 713
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 153/292 (52%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ +T++ +I C L+ G QLHA+ +G + + V ++ MY G L SS +F
Sbjct: 317 NEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIF 376
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E+ R++V+W+ II G Y + +EA L M E +P+E + +V
Sbjct: 377 HEMTRRDIVSWSTIIAG----------YXQGGHVSEAFELLSWMRM-EGPKPTEFALASV 425
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + + + +H Y G + V + LI+ Y KCG I AS++F+ + +
Sbjct: 426 LSACGNMAILEHGKQLHAYVLSIGLEHTAM-VLSALINMYCKCGSIEEASRIFD--AAEN 482
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
++VSWT +I+G+A HG +E ++ FE++ +VGL+P+ IG + G +
Sbjct: 483 DDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVLSACSHAGLVDLGFHY 542
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ M ++ ++ P +HYGC+ID+L RAGRL AE + +P + VVW T
Sbjct: 543 FNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDD-VVWST 593
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 106/218 (48%), Gaps = 14/218 (6%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D F S + C S N G LH K G + V+V +AL DMY G + + ++
Sbjct: 114 IDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRV 173
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F E+P RN+V+W IITGLV+ GY++ EAL F M E T
Sbjct: 174 FHEMPMRNVVSWTAIITGLVR-----AGYNK-----EALVYFSEMWRSR-VEYDSYTFAI 222
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A +G + + IH K+GF+ V+N L Y KCG + LFE S+
Sbjct: 223 ALKACADSGALNYGREIHAQAMKKGFDVSSF-VANTLATMYNKCGKLEYGLTLFEKMSM- 280
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+++VSWTTII+ G + AV+ F RM++ + PN
Sbjct: 281 -RDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPN 317
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 107/217 (49%), Gaps = 14/217 (6%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
+DS+T++ ++ C N G ++HA K GF +V L MY G L+ L
Sbjct: 215 YDSYTFAIALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTL 274
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+++ R++V+W IIT LV+ M + A+ F RM + + P+E T A
Sbjct: 275 FEKMSMRDVVSWTTIITTLVQ----------MGQEECAVQAFIRMRESDVS-PNEYTFAA 323
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
V+ + + +H G A + V N ++ YAKCG + S+S +F + +
Sbjct: 324 VISGCANLARIEWGEQLHALILHLGLAA-SLSVENSIMTMYAKCGQLTSSSVIFHEMT-- 380
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
R+++VSW+TII+G+ G EA E M+ G KP
Sbjct: 381 RRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPKP 417
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 79/162 (48%), Gaps = 13/162 (8%)
Query: 70 VSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC 129
V G L ++ ++FD++ +++ ++W T +I GY N S+EAL LF+ M
Sbjct: 60 VKTGHLGNARRMFDKMSQKDEISW----------TTLISGYVNANDSSEALLLFKNMRVE 109
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
+ A N +V +L+HGY K G + V + L+D Y K G IF
Sbjct: 110 SGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGL-VNSVFVGSALLDMYTKNGKIF 168
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
++F + + +N+VSWT II+G G KEA+ F M
Sbjct: 169 EGRRVFHEMPM--RNVVSWTAIITGLVRAGYNKEALVYFSEM 208
>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
Length = 784
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 166/292 (56%), Gaps = 28/292 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT++ ++ +C + S LG Q+H++ K F+SH++V ++L DMY G + ++ ++F
Sbjct: 110 NEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVF 169
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D LPER++V+ T II GY+++ EAL LFRR+ E + +T +V
Sbjct: 170 DGLPERDVVS----------CTAIISGYAQLGLDEEALDLFRRLQR-EGMRSNYVTYASV 218
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A+ + + + +H + R F + + N LID Y+KCG + + ++F+ S+
Sbjct: 219 LTALSGLAALDHGRQVHSH-VLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFD--SMPE 275
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-LKPNRSWRIG-----------EEGLK 250
+ ++SW ++ G++ HG+G+EAVE F+ M++ +KP+ + + GL+
Sbjct: 276 RTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLE 335
Query: 251 FFDKMVEECEVL-PDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F +MV + + P+I+HYGC++D+ RAGR+E+A E +P + T +W
Sbjct: 336 IFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPT-AAIW 386
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 138/285 (48%), Gaps = 26/285 (9%)
Query: 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP 86
Y ++ C++ + G ++HA K ++ VY+ T L +Y L D+ ++ DE+P
Sbjct: 13 YDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMP 72
Query: 87 ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI 146
ERN+V+ WT +I GYS+ ++EAL LF M T P+E T VL +
Sbjct: 73 ERNVVS----------WTAMISGYSQRGYASEALHLFVEMLMSG-TAPNEFTFATVLTSC 121
Query: 147 WKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLV 206
+ + + IH K F + I V + L+D YAK G I A ++F+ + +++V
Sbjct: 122 TSSSGFQLGRQIHSLVIKTSFESH-IFVGSSLLDMYAKAGKICEARRVFD--GLPERDVV 178
Query: 207 SWTTIISGFAMHGMGKEAVENFERMQKVGLKPN----RSWRIGEEGLKFFD--KMVEECE 260
S T IISG+A G+ +EA++ F R+Q+ G++ N S GL D + V
Sbjct: 179 SCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHV 238
Query: 261 VLPDIKHY----GCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ + Y LID+ + G L + + +P + V+ W
Sbjct: 239 LRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPER--TVISW 281
>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 805
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 160/290 (55%), Gaps = 25/290 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD T L++ C + G LH + F+S++ ++TA+ D+Y G LK ++ +
Sbjct: 330 FDLTTIVSLLQGCSQTASLATGKILHGCAIR-SFESNLILSTAIVDLYSKCGSLKQATFV 388
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+ + +RN++TW ++ GL + +G++ +AL LF +M E + +T ++
Sbjct: 389 FNRMKDRNVITWTAMLVGLAQ-----NGHAE-----DALRLFAQMQE-EGIAANSVTFVS 437
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
++ + G ++ + IHG+ + GF AFDI L+D YAKCG I A ++F S+
Sbjct: 438 LVHSCAHLGSLKRGRSIHGHLFRLGF-AFDIVNMTALVDMYAKCGKINLAERIFSHGSIS 496
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW-----------RIGEEGLK 250
K++V W ++I+G+ MHG G +AV + +M + GLKPN++ R+ E+G+
Sbjct: 497 -KDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGIS 555
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
F+ M + + P KHY CL+D+L RAGR E+A+ + +P Q V+
Sbjct: 556 LFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVL 605
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 148/319 (46%), Gaps = 55/319 (17%)
Query: 9 QIYIHSH-SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGD 67
Q++ H S + P T + LI+ C + LG +H +G + + V T+ D
Sbjct: 217 QLFFEMHGSGIKP--SPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVD 274
Query: 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGII----DGYSRMNRSNEALALF 123
MY +G ++ + +F ++P RNLV+WN +I+G V+ G++ D + R+ RS+ L
Sbjct: 275 MYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVR-NGLVGESFDLFHRLVRSSGGFDL- 332
Query: 124 RRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183
TI+++L + + +++HG R F + ++ +S ++D Y+
Sbjct: 333 -------------TTIVSLLQGCSQTASLATGKILHGCA-IRSFES-NLILSTAIVDLYS 377
Query: 184 KCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWR 243
KCG + A+ +F + +N+++WT ++ G A +G ++A+ F +MQ+ G+ N
Sbjct: 378 KCGSLKQATFVF--NRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSV-- 433
Query: 244 IGEEGLKFFDKMVEECEVLP-------------------DIKHYGCLIDILERAGRLEQA 284
F +V C L DI + L+D+ + G++ A
Sbjct: 434 -------TFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLA 486
Query: 285 EEVASGIPSQITNVVVWRT 303
E + S S +VV+W +
Sbjct: 487 ERIFSH-GSISKDVVLWNS 504
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 141/319 (44%), Gaps = 43/319 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DS + +F ++ C + +G ++ + + G + + +V +++ V G + ++ ++F
Sbjct: 129 DSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVF 188
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +P +++V WN II G V+ G D A LF M +PS IT+ ++
Sbjct: 189 DGMPNKDVVCWNSIIGGYVQ-AGCFD---------VAFQLFFEMHG-SGIKPSPITMTSL 237
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A G ++ + +HGY G DI V +D Y+K G I SA +F +
Sbjct: 238 IQACGGIGNLKLGKCMHGYVLGLGLGN-DILVLTSFVDMYSKMGDIESARWVF--YKMPT 294
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVL 262
+NLVSW +ISG +G+ E+ + F R+ + G L +++ C
Sbjct: 295 RNLVSWNAMISGCVRNGLVGESFDLFHRLVRSS---------GGFDLTTIVSLLQGCSQT 345
Query: 263 PDIKH----YGC--------------LIDILERAGRLEQAEEVASGIPSQITNVVVWRTG 304
+ +GC ++D+ + G L+QA V + + + NV+ W
Sbjct: 346 ASLATGKILHGCAIRSFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDR--NVITWTAM 403
Query: 305 FLRLLINSYFFSPITLNSQ 323
+ L N + + L +Q
Sbjct: 404 LVGLAQNGHAEDALRLFAQ 422
>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 499
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 163/317 (51%), Gaps = 43/317 (13%)
Query: 23 DSFTYSFLI----RTCVTLSYPNL--GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76
D FT++FLI R ++P+ ++H K GF SH++V AL ++Y G
Sbjct: 115 DEFTFNFLIKARSRVHKVHNFPSTLECDEIHGAVFKYGFCSHLFVQNALINLYAVKGSPA 174
Query: 77 DSSKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNR 115
+ ++F+E ++V+W+ ++ +V WT ++ GYS+ N
Sbjct: 175 AAWRVFNETVGVDVVSWSGLVLAHVRGGELELARQVFDDMPEKDVVSWTAMVSGYSKANC 234
Query: 116 SNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS 175
S EAL LF M+ P E+TI++V+ A G+V +H Y + GF + + +
Sbjct: 235 SREALELFWEMSDAG-IRPDEVTIVSVISACTNLGDVETGMNVHSYINENGF-GWMVSLC 292
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
N LI+ YAKCGC+ A ++F + + RK+L++W ++IS A HG ++A E F M G
Sbjct: 293 NALINMYAKCGCVDRAWRVFNN--MKRKSLITWNSMISACANHGYAEDAFELFSCMLNSG 350
Query: 236 LKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
+ P+ + +EG + F M + + I+HYGC++D+L RAGRLE+A
Sbjct: 351 IAPDGITFLALLIAYTHKGLVDEGYRLFQIMERDYGIEASIEHYGCIVDMLGRAGRLEEA 410
Query: 285 EEVASGIPSQITNVVVW 301
E+ +P +N +VW
Sbjct: 411 YELIVTMPIP-SNDIVW 426
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 47/203 (23%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT 132
G L + +LFD++P+ N +N II GY++ + + + LF +M +
Sbjct: 64 GDLPYAQRLFDQMPQPNTFFYNTIIR----------GYAKSSSPSYCVNLFNQMRQ-NHV 112
Query: 133 EPSEITILAVLPAIWKNGEVRN------CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG 186
+P E T ++ A + +V N C IHG K GF + + V N LI+ YA G
Sbjct: 113 DPDEFTFNFLIKARSRVHKVHNFPSTLECDEIHGAVFKYGFCSH-LFVQNALINLYAVKG 171
Query: 187 CIFSASKLFEDT-SVD----------------------------RKNLVSWTTIISGFAM 217
+A ++F +T VD K++VSWT ++SG++
Sbjct: 172 SPAAAWRVFNETVGVDVVSWSGLVLAHVRGGELELARQVFDDMPEKDVVSWTAMVSGYSK 231
Query: 218 HGMGKEAVENFERMQKVGLKPNR 240
+EA+E F M G++P+
Sbjct: 232 ANCSREALELFWEMSDAGIRPDE 254
>gi|449507733|ref|XP_004163116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 442
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 152/309 (49%), Gaps = 39/309 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D TY FL++ L LG +H K G + ++ +L MY S + + K+F
Sbjct: 112 DYLTYPFLVKATSKLLNQELGMAVHVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKVF 171
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
DE+P +NLVTWN ++ G +V W+ +IDGY + EA+A
Sbjct: 172 DEMPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMA 231
Query: 122 LFRRMAACEYTEP--SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
LF RM+ + P +E+T+++ L A G + + +++H Y + I + L+
Sbjct: 232 LFERMS---FDGPMANEVTLVSALCACAHLGALEHGRMMHRYIVENEL-PLTIVLQTSLV 287
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D YAKCG I A +F S+ +++ W II G A HG+ KEA+ F M+ VG+ P+
Sbjct: 288 DMYAKCGAIHEALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPD 347
Query: 240 R-----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
+ EE FFD + + ++P ++HY C++D L RAG++ +A +
Sbjct: 348 EITYLCLLSCCAHGGLVEEAWYFFDCLRKH-GMIPKVEHYACMVDALSRAGQVSEAYQFL 406
Query: 289 SGIPSQITN 297
+P Q T+
Sbjct: 407 CQMPVQPTS 415
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 103/279 (36%), Gaps = 57/279 (20%)
Query: 75 LKDSSKLFDEL-PERNL-----VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
+K LF L P R+L + NV W +I +S N ++ +F +M
Sbjct: 47 IKSKLLLFSALSPARDLDYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQ 106
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
P +T ++ A K +H + K G + D + N LI YA C I
Sbjct: 107 -NGVSPDYLTYPFLVKATSKLLNQELGMAVHVHIVKSG-HEIDKFIQNSLIHMYASCRDI 164
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW------ 242
SA K+F++ + RKNLV+W ++ G+A G A E F M + K SW
Sbjct: 165 ASARKVFDE--MPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMPE---KDVVSWSSLIDG 219
Query: 243 ----RIGEEGLKFFDKM---------VEECEVLPDIKHYGCL------------------ 271
R+ E + F++M V L H G L
Sbjct: 220 YVKGRVYGEAMALFERMSFDGPMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLT 279
Query: 272 -------IDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+D+ + G + +A V Q +V++W
Sbjct: 280 IVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIWNA 318
>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
Length = 1530
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 144/273 (52%), Gaps = 25/273 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++T F+I+ C ++G +H V K G +V AL DMY ++D+ LF
Sbjct: 1180 DNYTLPFVIKACRDTVALDMGRLIHCVVLKYGLHLDHFVCAALVDMYAKCKVIEDAKLLF 1239
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +P ++LVTW V+I GY+ + E+L LF + + P +I ++++
Sbjct: 1240 DVMPSKDLVTWTVMIG----------GYAECGNAKESLVLFDHLREEGFV-PDKIAMVSI 1288
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A K G + + +H Y + F + D+ + +ID YAKCG + SA ++F++ +
Sbjct: 1289 VNACAKLGAMNKARFVHEYVNRNRF-SLDVILGTAMIDMYAKCGDVDSAREIFDN--MHH 1345
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN++SW+ +I+ + HG GK+A+E F M G+ PN + E+GL
Sbjct: 1346 KNVISWSAMIAAYGYHGQGKKALELFPMMLSSGILPNNITFVSLLYACSHAGLVEDGLTL 1405
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
M E V PDIKH+ C++D+L RAG+L +A
Sbjct: 1406 LSLMWESFGVRPDIKHHTCMVDLLGRAGQLTEA 1438
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 122/271 (45%), Gaps = 33/271 (12%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGD----MYVSLGFLKDSSKLFDELPERNLVTWNVIITGL 100
QLHA+ + S +Y N + + +YV L D+ LFDE+P++N V+W+++I G
Sbjct: 1100 QLHALITT---NSVLYNNLTVANKLLYVYVHHKCLTDAYALFDEMPQKNPVSWSIMIGGF 1156
Query: 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHG 160
VK + Y L R +P T+ V+ A + +LIH
Sbjct: 1157 VKVGEFMQCYKTFKE------LIRN-----GVQPDNYTLPFVIKACRDTVALDMGRLIHC 1205
Query: 161 YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGM 220
K G + D V L+D YAKC I A LF+ + K+LV+WT +I G+A G
Sbjct: 1206 VVLKYGLH-LDHFVCAALVDMYAKCKVIEDAKLLFD--VMPSKDLVTWTVMIGGYAECGN 1262
Query: 221 GKEAVENFERMQKVGLKP---------NRSWRIGE-EGLKFFDKMVEECEVLPDIKHYGC 270
KE++ F+ +++ G P N ++G +F + V D+
Sbjct: 1263 AKESLVLFDHLREEGFVPDKIAMVSIVNACAKLGAMNKARFVHEYVNRNRFSLDVILGTA 1322
Query: 271 LIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ID+ + G ++ A E+ + + NV+ W
Sbjct: 1323 MIDMYAKCGDVDSAREIFDNMHHK--NVISW 1351
>gi|413924390|gb|AFW64322.1| hypothetical protein ZEAMMB73_176484 [Zea mays]
Length = 496
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 101/322 (31%), Positives = 166/322 (51%), Gaps = 43/322 (13%)
Query: 16 SPLPPLFDSFTYSFLIRTCVT-----LSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV 70
SP P + T ++ C L+ P L LHA K+ F SH+ ++T L Y+
Sbjct: 61 SPAAPAPNDVTLLTVLSACADSPSSPLASP-LALTLHARALKL-FPSHLLLSTCLARFYL 118
Query: 71 SLGFLKDSSKLFDELPERNLVTWNVIITGL---------------------VKWTGIIDG 109
+ + +LFD +P R++VT+N +I+GL V WT +IDG
Sbjct: 119 ASRLPHLALQLFDSMPVRSVVTYNTMISGLMRNGLVDAAFEVFDGMPGPDKVSWTALIDG 178
Query: 110 YSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNA 169
+ + R +EA+ FR M + E IT++AV+ A + G + +H ++
Sbjct: 179 FVKNGRHDEAIDCFRAML-LDGVETDYITLVAVVSACAEVGALGLGMWVHRLVLRQRLER 237
Query: 170 FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFE 229
++ V+N LID YA+CG + A+++F S+ ++ +VSW ++I GFA +G +A+E FE
Sbjct: 238 -NVRVANSLIDMYARCGQVNLAAQVFR--SIRKRTVVSWNSMIVGFAANGRCTDAIELFE 294
Query: 230 RMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERA 278
M++ G KP+ G E GL+++D M E V ++HYGC++D+L RA
Sbjct: 295 EMRRQGFKPDAVTLTGVLTACSHAGLTEHGLRYYDLMTTEYGVAARMEHYGCVVDLLGRA 354
Query: 279 GRLEQAEEVASGIPSQITNVVV 300
GRL++A V +P + VV+
Sbjct: 355 GRLDEAMHVVETMPMRPNEVVL 376
>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 648
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 143/273 (52%), Gaps = 26/273 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FT+ F+++ C LS G ++H + G++ V+V AL DMY G + + ++F
Sbjct: 175 DNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVF 234
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++ R+ V WN ++ YS+ + L+L M P+E T++
Sbjct: 235 DKILVRDAVLWNSMLA----------AYSQNGHPDACLSLCSEMVLTGL-RPTEATLVTA 283
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A N + + +HG ++ F + D V L+D YAKCG + A LFE V R
Sbjct: 284 ISASADNAALPQGRELHGLSWRQEFESHD-KVKTALVDMYAKCGSVRVARNLFERLGVKR 342
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+VSW +I+G+AMHG EA++ FE M +V KP+ +G EEG F
Sbjct: 343 --VVSWNAMITGYAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMF 399
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
F+ M+ + ++ P ++HY C++D+L +GRL++A
Sbjct: 400 FETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEA 432
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 101/217 (46%), Gaps = 16/217 (7%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
Y+ L+++C+ G QLHA GF + T L ++Y L + LFD +
Sbjct: 77 NYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRI 136
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY-TEPSEITILAVLP 144
P+ N+ WNV+I G W G + A+ L+ +M +Y P T VL
Sbjct: 137 PKHNIFLWNVLIRGYA-WNGPYEA---------AVQLYYQMF--DYGLVPDNFTFPFVLK 184
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A + + + IH + + G+ D+ V LID YAKCGC+ SA ++F+ V ++
Sbjct: 185 ACAALSAIEHGREIHEHVVQTGWEK-DVFVGAALIDMYAKCGCVGSAREVFDKILV--RD 241
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
V W ++++ ++ +G + M GL+P +
Sbjct: 242 AVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEA 278
>gi|222622042|gb|EEE56174.1| hypothetical protein OsJ_05117 [Oryza sativa Japonica Group]
Length = 545
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 156/313 (49%), Gaps = 37/313 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D F + L +G+ +H + + G S + V AL DMY G + + +F
Sbjct: 118 DGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVF 177
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
D + ++ VTW ++ G +K WT +I G+ + + +AL
Sbjct: 178 DRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALE 237
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF +M E P+ ITI+ VL A G + + IHGYG K +I V+N L+D
Sbjct: 238 LFGKML-LEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATT-NIIVTNALMDM 295
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAK G I SA +FE+ V K+ +WTT+IS F + G G++AVE F M + G+ PN
Sbjct: 296 YAKSGSIASAFSVFEE--VQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSV 353
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+ +EG + FDKM E + P ++HYGC++D+L R G LE+AE +
Sbjct: 354 TFVSVLSACSHAGLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDH 413
Query: 291 IPSQITNVVVWRT 303
+ + ++V+WR+
Sbjct: 414 MDVE-PDIVIWRS 425
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 92/213 (43%), Gaps = 21/213 (9%)
Query: 9 QIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDM 68
++ + H P + T ++ C + +LG +H SK +++ V AL DM
Sbjct: 241 KMLLEGHRP-----NHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDM 295
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y G + + +F+E+ ++ T WT +I ++ +A+ LF M
Sbjct: 296 YAKSGSIASAFSVFEEVQMKDAFT----------WTTMISSFTVQGNGRKAVELFWDMLR 345
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN--CLIDTYAKCG 186
P+ +T ++VL A G ++ + + + + R D + + C++D + G
Sbjct: 346 SGIL-PNSVTFVSVLSACSHAGLIQEGREL--FDKMREVYHIDPRLEHYGCMVDLLGRGG 402
Query: 187 CIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
+ A L + V+ ++V W +++S HG
Sbjct: 403 LLEEAEALIDHMDVE-PDIVIWRSLLSACLAHG 434
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 41/206 (19%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y G D+ +LFDE+P ++++ +T ++ + +++ +A+++F A
Sbjct: 63 YAEFGRPADAGRLFDEIPHPDIIS----------FTSLMSLHLKLDHHWKAISVFSHAIA 112
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
+ P + L A G+ R ++HG + G ++ ++ V N L+D Y +CG
Sbjct: 113 SGH-RPDGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDS-ELVVCNALVDMYCRCGKF 170
Query: 189 FSASKLFE-----------------------DTSVD------RKNLVSWTTIISGFAMHG 219
A +F+ D+++ K+ VSWT +I+G
Sbjct: 171 EPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDK 230
Query: 220 MGKEAVENFERMQKVGLKPNRSWRIG 245
+A+E F +M G +PN +G
Sbjct: 231 QPIQALELFGKMLLEGHRPNHITIVG 256
>gi|226508188|ref|NP_001146230.1| uncharacterized protein LOC100279802 [Zea mays]
gi|219886289|gb|ACL53519.1| unknown [Zea mays]
Length = 537
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 164/346 (47%), Gaps = 70/346 (20%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS--- 79
D T+ F++R C + G Q+HA K G +S +V AL M+ +LG L ++
Sbjct: 114 DKRTFPFVLRACAAMGAGETGAQVHAHVVKAGCESDAFVRNALIGMHATLGDLGAAAALF 173
Query: 80 ----------------------------KLFDELPERNLVTWNVIITG------------ 99
+LFDE P ++LV+WNV+IT
Sbjct: 174 DGEAREDAVAWSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARE 233
Query: 100 ---------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
+V W +I GY R +A+ LF +M A +P +T+L++L A +G
Sbjct: 234 LFDGAPDRDVVSWNAMISGYVRCGSRKQAMELFEQMQAMG-EKPDTVTMLSLLSACADSG 292
Query: 151 EVRNCQLIHGYGEKRGFNAFD--IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSW 208
++ + +HG+ R F+ + N LID YAKCG + SA ++F + KN+ +W
Sbjct: 293 DLDAGRRLHGFLSGR-FSRIGPTTALGNALIDMYAKCGSMTSALEVF--WLMQDKNVSTW 349
Query: 209 TTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVE 257
+II G A+HG E++ F +M + +KP+ + ++G ++F M +
Sbjct: 350 NSIIGGLALHGHATESIAVFRKMLQGNVKPDEITFVAVLAACSHGGMVDKGHEYFSLMQQ 409
Query: 258 ECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ P+IKHYGC++D+L R G L++A E + + N V+WRT
Sbjct: 410 RYRIEPNIKHYGCMVDMLSRGGLLKEAFEFIGTMKIE-PNPVIWRT 454
>gi|15240355|ref|NP_200988.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171532|sp|Q9FLS9.1|PP441_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61800
gi|10176873|dbj|BAB10080.1| unnamed protein product [Arabidopsis thaliana]
gi|332010136|gb|AED97519.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 499
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 99/314 (31%), Positives = 159/314 (50%), Gaps = 40/314 (12%)
Query: 18 LPPLFDSFTYSFLIRTCVTLSYPNLG--TQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL 75
+PP D T+ F+ + C +L LH + G S ++ L +Y + +
Sbjct: 111 VPP--DFHTFPFVFKACAAKKNGDLTLVKTLHCQALRFGLLSDLFTLNTLIRVYSLIAPI 168
Query: 76 KDSSKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMN 114
+ +LFDE P+R++VT+NV+I GLVK W +I GY++MN
Sbjct: 169 DSALQLFDENPQRDVVTYNVLIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMN 228
Query: 115 RSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHV 174
EA+ LF M A +P + I++ L A ++G+ + + IH Y +++ D +
Sbjct: 229 HCREAIKLFDEMVALGL-KPDNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRL-FIDSFL 286
Query: 175 SNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
+ L+D YAKCG I +A ++FE S K L +W +I+G AMHG G+ V+ F +M
Sbjct: 287 ATGLVDFYAKCGFIDTAMEIFELCS--DKTLFTWNAMITGLAMHGNGELTVDYFRKMVSS 344
Query: 235 GLKPNR----SWRIG-------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQ 283
G+KP+ S +G +E FD+M +V ++KHYGC+ D+L RAG +E+
Sbjct: 345 GIKPDGVTFISVLVGCSHSGLVDEARNLFDQMRSLYDVNREMKHYGCMADLLGRAGLIEE 404
Query: 284 AEEVASGIPSQITN 297
A E+ +P N
Sbjct: 405 AAEMIEQMPKDGGN 418
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 86/206 (41%), Gaps = 34/206 (16%)
Query: 60 YVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEA 119
++ T L D Y GF+ + ++F+ ++ L TWN +ITGL M+ + E
Sbjct: 285 FLATGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLA-----------MHGNGEL 333
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNG---EVRNC--QLIHGYGEKRGFNAFDIHV 174
+ R +P +T ++VL +G E RN Q+ Y R +
Sbjct: 334 TVDYFRKMVSSGIKPDGVTFISVLVGCSHSGLVDEARNLFDQMRSLYDVNREMKHY---- 389
Query: 175 SNCLIDTYAKCGCIFSASKLFEDTSVD---RKNLVSWTTIISGFAMHGMGKEAVENFERM 231
C+ D + G I A+++ E D R+ L++W+ ++ G +HG N E
Sbjct: 390 -GCMADLLGRAGLIEEAAEMIEQMPKDGGNREKLLAWSGLLGGCRIHG-------NIEIA 441
Query: 232 QKVGLKPNRSWRIGEEGLKFFDKMVE 257
+K NR + E + MVE
Sbjct: 442 EKAA---NRVKALSPEDGGVYKVMVE 464
>gi|218189919|gb|EEC72346.1| hypothetical protein OsI_05579 [Oryza sativa Indica Group]
Length = 545
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 156/313 (49%), Gaps = 37/313 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D F + L +G+ +H + + G S + V AL DMY G + + +F
Sbjct: 118 DGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDSELVVCNALVDMYCRCGKFEPARTVF 177
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
D + ++ VTW ++ G +K WT +I G+ + + +AL
Sbjct: 178 DRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDKQPIQALE 237
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF +M E P+ ITI+ VL A G + + IHGYG K +I V+N L+D
Sbjct: 238 LFGKML-LEGHRPNHITIVGVLSACADIGALDLGRAIHGYGSKSNATT-NIIVTNALMDM 295
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAK G I SA +FE+ V K+ +WTT+IS F + G G++AVE F M + G+ PN
Sbjct: 296 YAKSGSIASAFSVFEE--VQMKDAFTWTTMISSFTVQGNGRKAVELFWDMLRSGILPNSV 353
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+ +EG + FDKM E + P ++HYGC++D+L R G LE+AE +
Sbjct: 354 TFVSVLSACSHAGLIQEGRELFDKMREVYHIDPRLEHYGCMVDLLGRGGLLEEAEALIDH 413
Query: 291 IPSQITNVVVWRT 303
+ + ++V+WR+
Sbjct: 414 MDVE-PDIVIWRS 425
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 92/213 (43%), Gaps = 21/213 (9%)
Query: 9 QIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDM 68
++ + H P + T ++ C + +LG +H SK +++ V AL DM
Sbjct: 241 KMLLEGHRP-----NHITIVGVLSACADIGALDLGRAIHGYGSKSNATTNIIVTNALMDM 295
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y G + + +F+E+ ++ T WT +I ++ +A+ LF M
Sbjct: 296 YAKSGSIASAFSVFEEVQMKDAFT----------WTTMISSFTVQGNGRKAVELFWDMLR 345
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN--CLIDTYAKCG 186
P+ +T ++VL A G ++ + + + + R D + + C++D + G
Sbjct: 346 SGIL-PNSVTFVSVLSACSHAGLIQEGREL--FDKMREVYHIDPRLEHYGCMVDLLGRGG 402
Query: 187 CIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
+ A L + V+ ++V W +++S HG
Sbjct: 403 LLEEAEALIDHMDVE-PDIVIWRSLLSACLAHG 434
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 41/206 (19%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y G D+ +LFDE+P ++++ +T ++ + +++ +A+++F A
Sbjct: 63 YAEFGRPADAGRLFDEIPHPDIIS----------FTSLMSLHLKLDHHWKAISVFSHAIA 112
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
+ P + L A G+ R ++HG + G ++ ++ V N L+D Y +CG
Sbjct: 113 SGH-RPDGFAAVGALSASGGLGDQRIGSVVHGLIFRCGLDS-ELVVCNALVDMYCRCGKF 170
Query: 189 FSASKLFE-----------------------DTSVD------RKNLVSWTTIISGFAMHG 219
A +F+ D+++ K+ VSWT +I+G
Sbjct: 171 EPARTVFDRMLVKDEVTWGSMLYGYMKCVGVDSALSFFYQMPMKSTVSWTALITGHVQDK 230
Query: 220 MGKEAVENFERMQKVGLKPNRSWRIG 245
+A+E F +M G +PN +G
Sbjct: 231 QPIQALELFGKMLLEGHRPNHITIVG 256
>gi|225435652|ref|XP_002283361.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36730
[Vitis vinifera]
Length = 461
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 162/309 (52%), Gaps = 33/309 (10%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
++ Q+Q++ L P D+FTY F+++ C G +H++ K GF S YV
Sbjct: 87 LFSQMQRV------GLKP--DNFTYPFVVKACGRSLVVGAGGAMHSIIVKAGFDSDRYVG 138
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
L MY +L + + ++F+E+ R++V+ W+ +I GY N +AL +
Sbjct: 139 NTLLRMYANLNAVGLARRVFNEMTVRDVVS----------WSSMIAGYVACNCQADALMV 188
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
FR M +P+ +T++++L A + + + IH Y D+ + +++ Y
Sbjct: 189 FRHMMLAN-EKPNSVTLVSLLSACTRLLNIGVGESIHSYIIVNCI-GLDVALGTAILEMY 246
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN--- 239
+KCG I A K+F S+ KNL SWT +ISG A H G++A+ F +M++ GL+P+
Sbjct: 247 SKCGHIEKALKVF--NSLTEKNLQSWTIMISGLADHSHGEDAISLFTQMEQTGLQPDSMS 304
Query: 240 --------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
+ +EG FF +MV+ + P ++HYGC++D+ RAG +E+A E+ +
Sbjct: 305 FSEILSACSHLGLVDEGQTFFSQMVKIYNIRPTMEHYGCMVDMFARAGMIEEAYEIIKNM 364
Query: 292 PSQITNVVV 300
P + +V++
Sbjct: 365 PMEPNSVIL 373
>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
Length = 1091
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 85/261 (32%), Positives = 140/261 (53%), Gaps = 26/261 (9%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G +H + G + + V AL +MYV ++++ +FD + +++++WN +I
Sbjct: 638 GKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLI----- 692
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
GYSR N NE+ +LF M P+ +T+ +LPA + + IH Y
Sbjct: 693 -----GGYSRNNFPNESFSLFSDMLL--QFRPNAVTMTCILPAAASISSLERGREIHAYA 745
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
+RGF D + SN L+D Y KCG + A LF+ + +KNL+SWT +I+G+ MHG GK
Sbjct: 746 LRRGF-LEDSYASNALVDMYVKCGALLVARVLFD--RLTKKNLISWTIMIAGYGMHGFGK 802
Query: 223 EAVENFERMQKVGLKPNRS-----------WRIGEEGLKFFDKMVEECEVLPDIKHYGCL 271
A+ FE+M+ G++P+ + + EG +FF M +E ++ P +KHY C+
Sbjct: 803 HAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCI 862
Query: 272 IDILERAGRLEQAEEVASGIP 292
+D+L R G L++A E +P
Sbjct: 863 VDLLSRTGDLKEALEFIESMP 883
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 106/217 (48%), Gaps = 14/217 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D S L++ LS G H K+GF + V AL Y + D+ +F
Sbjct: 416 DEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVF 475
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ +P ++ ++WN +I+G S ++EA+ LF RM + E +T+L+V
Sbjct: 476 NRMPRQDTISWNSVISGC----------SSNGLNSEAIELFIRMWT-QGQELDSVTLLSV 524
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LPA ++ +++HGY K G + ++N L+D Y+ C S +++F S+ +
Sbjct: 525 LPACAQSRYWFAGRVVHGYSVKTGLIG-ETSLANALLDMYSNCSDWQSTNQIFR--SMGQ 581
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
KN+VSWT +I+ + G+ + + M G++P+
Sbjct: 582 KNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPD 618
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 110/228 (48%), Gaps = 25/228 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ S +++ +L G +H + K+G V AL +Y G ++D++++F
Sbjct: 203 DAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVF 262
Query: 83 DELPERNLVTWNVIITGLVK--WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
D + R+ ++WN +I G W G A+ LF +M + + TE S +T+L
Sbjct: 263 DSMHPRDAISWNSMIGGCFSNGWHGT------------AVDLFSKMWS-QGTEISSVTVL 309
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGF---------NAFDIHVSNCLIDTYAKCGCIFSA 191
+VLPA G + +HGY K G D + + L+ Y KCG + SA
Sbjct: 310 SVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASA 369
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
++F+ S + N+ W I+ G+A G +E++ F +M ++G+ P+
Sbjct: 370 RRVFDAMS-SKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPD 416
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 103/226 (45%), Gaps = 27/226 (11%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF-------QSHVYVNTALGD----MYV 70
S T ++ C L Y +G +H K G QS + + ALG MYV
Sbjct: 303 ISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGID-DAALGSKLVFMYV 361
Query: 71 SLGFLKDSSKLFDELPER-NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC 129
G + + ++FD + + N+ WN+I+ GY+++ E+L+LF +M
Sbjct: 362 KCGDMASARRVFDAMSSKGNVHVWNLIM----------GGYAKVGEFEESLSLFVQMHEL 411
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
P E I +L I R+ + HGY K GF A V N LI YAK I
Sbjct: 412 GIA-PDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGA-QCAVCNALISFYAKSNMIG 469
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
A +F + R++ +SW ++ISG + +G+ EA+E F RM G
Sbjct: 470 DAVLVF--NRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQG 513
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 98/217 (45%), Gaps = 16/217 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGD----MYVSLGFLKDS 78
D +Y +++ C + HA+ + + LG Y+ G L ++
Sbjct: 96 DVRSYCMVVQLCGEERSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLAYLKCGDLGEA 155
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
+FD +P + + WT ++ Y++ EA++LFR+M C + P
Sbjct: 156 RTVFDGMPPQ--------AADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVS-PDAHA 206
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+ VL + G + ++IHG EK G V+N LI Y++CG + A+++F+
Sbjct: 207 VSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQA-CAVANALIAVYSRCGRMEDAARVFD-- 263
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
S+ ++ +SW ++I G +G AV+ F +M G
Sbjct: 264 SMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQG 300
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 86/196 (43%), Gaps = 12/196 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++ T + ++ ++S G ++HA + GF Y + AL DMYV G L + LF
Sbjct: 718 NAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLF 777
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D L ++NL++W ++I GY A+ALF +M EP + A+
Sbjct: 778 DRLTKKNLISWTIMIA----------GYGMHGFGKHAIALFEQMRG-SGIEPDAASFSAI 826
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A +G + +K + C++D ++ G + A + E ++
Sbjct: 827 LYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEP 886
Query: 203 KNLVSWTTIISGFAMH 218
+ + W +++ G +H
Sbjct: 887 DSSI-WVSLLHGCRIH 901
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 53/126 (42%), Gaps = 22/126 (17%)
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
L+ Y KCG + A +F+ ++ WT+++S +A G +EAV F +MQ G+
Sbjct: 142 LVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVS 201
Query: 238 PNR--------------SWRIGEEGLKFFDK--MVEECEVLPDIKHYGCLIDILERAGRL 281
P+ S GE +K + + C V LI + R GR+
Sbjct: 202 PDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVA------NALIAVYSRCGRM 255
Query: 282 EQAEEV 287
E A V
Sbjct: 256 EDAARV 261
>gi|297721835|ref|NP_001173281.1| Os03g0169300 [Oryza sativa Japonica Group]
gi|19071631|gb|AAL84298.1|AC073556_15 putative pentatricopeptide repeat containing protein [Oryza sativa
Japonica Group]
gi|108706397|gb|ABF94192.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125585070|gb|EAZ25734.1| hypothetical protein OsJ_09569 [Oryza sativa Japonica Group]
gi|215769145|dbj|BAH01374.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255674238|dbj|BAH92009.1| Os03g0169300 [Oryza sativa Japonica Group]
Length = 510
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 167/320 (52%), Gaps = 49/320 (15%)
Query: 23 DSFTYSFLIRTCV-TLSYPNLGTQLHAVFSKVGF----QSHVYVNTALGDMYVSLGFLKD 77
D+FT++F +++C +S L + LHA K G SHV+V+ AL Y S + D
Sbjct: 120 DAFTFTFALKSCSRCVSQRRLPSDLHAQAIKHGCLGAGSSHVHVHNALLHGYSSRAAVGD 179
Query: 78 SSKLFDELPERNLVTWNVIIT---------------------GLVKWTGIIDGYSRMNRS 116
+ ++FDE+P R++++++ ++T +V WT +I Y+R R
Sbjct: 180 ARRVFDEMPARDVISFSGLLTLHLKANDLDAARVVFDQMPHRDVVSWTAMISAYARARRP 239
Query: 117 NEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN 176
EALALF M +P E+T+L+V+ A G++ + + Y + GF + + + N
Sbjct: 240 QEALALFDAMP----VQPDEVTMLSVVSACTALGDLATGERVCQYVDSNGFG-WMVSLRN 294
Query: 177 CLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG- 235
L+D YAKCG + A LF+ +V ++L SW T IS +A HG + V F RM G
Sbjct: 295 ALMDMYAKCGSLTEARNLFDGMTV--RSLASWNTFISAYASHGDVESTVALFHRMLADGK 352
Query: 236 -LKPNRSWRIG-----------EEGLKFFDKMVEE--CEVLPDIKHYGCLIDILERAGRL 281
+KP+ + + EEG F+ ++ +V I+HYGC++D+L RAG+L
Sbjct: 353 SVKPDGTTLLAVLTAYAHKGFVEEGRAMFNAILSGNYGKVDLTIEHYGCMVDLLGRAGQL 412
Query: 282 EQAEEVASGIPSQITNVVVW 301
E+A ++ +P +N VVW
Sbjct: 413 EEAYKMIEQMPIP-SNSVVW 431
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 90/222 (40%), Gaps = 19/222 (8%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76
P+ P D T ++ C L G ++ GF V + AL DMY G L
Sbjct: 250 PVQP--DEVTMLSVVSACTALGDLATGERVCQYVDSNGFGWMVSLRNALMDMYAKCGSLT 307
Query: 77 DSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM-AACEYTEPS 135
++ LFD + R+L +WN I+ Y+ +ALF RM A + +P
Sbjct: 308 EARNLFDGMTVRSLASWNTFIS----------AYASHGDVESTVALFHRMLADGKSVKPD 357
Query: 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN--CLIDTYAKCGCIFSASK 193
T+LAVL A G V + + + D+ + + C++D + G + A K
Sbjct: 358 GTTLLAVLTAYAHKGFVEEGRAMFNAILSGNYGKVDLTIEHYGCMVDLLGRAGQLEEAYK 417
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQ 232
+ E + N V W ++ HG M + AV+ +
Sbjct: 418 MIEQMPIP-SNSVVWGALLGACRTHGDINMAERAVQKLRSLN 458
>gi|297797141|ref|XP_002866455.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
gi|297312290|gb|EFH42714.1| hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp.
lyrata]
Length = 1401
Score = 151 bits (382), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 99/312 (31%), Positives = 158/312 (50%), Gaps = 42/312 (13%)
Query: 18 LPPLFDSFTYSFLIRTCVTLSYPNLG--TQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL 75
+PP F TY F+ + C +L LH + G S ++ L Y + +
Sbjct: 525 VPPDF--HTYPFVFKACAAKKNGDLSLVKTLHCQALRFGLLSDLFTLNTLIRAYSLMAPI 582
Query: 76 KDSSKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMN 114
+ +LFDE P+R++VT+NV+I GLVK W +I GY++MN
Sbjct: 583 GSALQLFDENPQRDVVTYNVLIDGLVKACEIVRARELFDSMPFRDLVSWNSLIAGYAQMN 642
Query: 115 RSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHV 174
+ EA++LF M +P + I++ L A ++G++ + IH Y +K+ D +
Sbjct: 643 QCREAISLFDEMIGLGL-KPDNVAIVSTLSACAQSGDLEKGKAIHDYTKKKRL-FIDSFL 700
Query: 175 SNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
+ L+D YAKCG I +A ++F +S K L +W +I+G AMHG G+ V+ F +M
Sbjct: 701 ATGLVDFYAKCGFIDTAMEIFHLSS--DKTLFTWNAMITGLAMHGNGELTVDYFHKMVSS 758
Query: 235 GLKPN------------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLE 282
G+KP+ S +GE K FD+M +V ++KHYGC+ D+L RAG +E
Sbjct: 759 GIKPDGVSFISVLVGCSHSGLVGE-ARKLFDQMRSLYDVDREMKHYGCMADLLGRAGLIE 817
Query: 283 QAEEVASGIPSQ 294
+A E+ +P
Sbjct: 818 EAAEMIEQMPKD 829
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 77/182 (42%), Gaps = 18/182 (9%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G +H K ++ T L D Y GF+ + ++F ++ L TWN +ITGL
Sbjct: 682 GKAIHDYTKKKRLFIDSFLATGLVDFYAKCGFIDTAMEIFHLSSDKTLFTWNAMITGLA- 740
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
M+ + E + +P ++ ++VL +G V + + +
Sbjct: 741 ----------MHGNGELTVDYFHKMVSSGIKPDGVSFISVLVGCSHSGLVGEARKL--FD 788
Query: 163 EKRGFNAFDIHVSN--CLIDTYAKCGCIFSASKLFEDTSVD---RKNLVSWTTIISGFAM 217
+ R D + + C+ D + G I A+++ E D R+ L++W+ ++ G +
Sbjct: 789 QMRSLYDVDREMKHYGCMADLLGRAGLIEEAAEMIEQMPKDGGKREKLLAWSGLLGGCRI 848
Query: 218 HG 219
HG
Sbjct: 849 HG 850
>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
Length = 595
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 155/284 (54%), Gaps = 26/284 (9%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P D +++ +I+ V + + G L+ + V+V AL DMY+ G +
Sbjct: 202 PQRDLVSWTTMIQGYVKMGFAREGVGLY-IIRNSNVNLDVFVGNALVDMYLKCGDANFAR 260
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
K+F E+P +N+V+WN +I+GL ++ + E+L +FR+M +P ++T+
Sbjct: 261 KVFQEMPVKNVVSWNSMISGL----------AQKGQFKESLYMFRKMQRLG-VKPDDVTL 309
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+AVL + G + + +H Y ++ A D + N L+D YAKCG I A +F+ +
Sbjct: 310 VAVLNSCANLGVLELGKWVHAYLDRNQIRA-DGFIGNALVDMYAKCGSIDQACWVFQ--A 366
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
++RK++ S+T +I G AMHG G +A++ F M K+G++P+ +G EEG
Sbjct: 367 MNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGLVEEG 426
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
K+F+ M + P ++HYGC++D+L RAG + +AEE +P
Sbjct: 427 RKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMP 470
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 76/145 (52%), Gaps = 13/145 (8%)
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
L +L NL +N II GL + N S E L ++++M + + P TI
Sbjct: 95 LLAQLRTPNLPLYNAIIRGLA---------TSNNDSIEGLVVYKQMLS-KGIVPDNYTIP 144
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
VL A ++ VR + +HG K G A D++VSN L+ YA C I SA K+F DTS
Sbjct: 145 FVLKACAESRAVREGEEVHGQAIKMGL-ASDVYVSNTLMRMYAVCDVIRSARKVF-DTSP 202
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAV 225
R +LVSWTT+I G+ G +E V
Sbjct: 203 QR-DLVSWTTMIQGYVKMGFAREGV 226
>gi|147811906|emb|CAN68178.1| hypothetical protein VITISV_000846 [Vitis vinifera]
Length = 633
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 144/248 (58%), Gaps = 28/248 (11%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y+ LG ++D+ +F E+PER+ V+WN +I G V+ I Y+R ALALFR M
Sbjct: 226 YIRLGKIEDAKAVFQEMPERDAVSWNSMIAGYVQ----IKDYAR------ALALFREMEI 275
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
E ++IT+++VL A + G + + IH ++R + + ++SN L+D YAKCG +
Sbjct: 276 AN-VEATDITLISVLGACAETGALEIGRKIHLSLKQREYK-IEGYLSNALVDMYAKCGHL 333
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV--GLKPNRSWRIG- 245
A ++F + + K++ W +I A+HG +EA+ F M+ G +PNR IG
Sbjct: 334 NLAWEVFSELKM--KHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARPNRVTFIGV 391
Query: 246 ----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQI 295
+EG KFF++MV E +++PDIKHYGC++D+L R G L++A + +P +
Sbjct: 392 LIACSHKGLVDEGRKFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEAHHMIKTMPFE- 450
Query: 296 TNVVVWRT 303
N V+WRT
Sbjct: 451 ANSVLWRT 458
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 91/210 (43%), Gaps = 26/210 (12%)
Query: 33 TCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVT 92
C +G ++H + ++ Y++ AL DMY G L + ++F EL +++
Sbjct: 291 ACAETGALEIGRKIHLSLKQREYKIEGYLSNALVDMYAKCGHLNLAWEVFSELKMKHISC 350
Query: 93 WNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA-ACEYTEPSEITILAVLPAIWKNGE 151
WN +I L + GY EAL LF M + + P+ +T + VL A G
Sbjct: 351 WNAMIVSLA-----VHGYCE-----EALRLFSTMEMSVDGARPNRVTFIGVLIACSHKGL 400
Query: 152 VRNCQLIHGYGEK---RGFNAF----DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
V G K R N + DI C++D ++CG + A + + + N
Sbjct: 401 VDE-------GRKFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEAHHMIKTMPFE-AN 452
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKV 234
V W T++ +H A E+F+++ K+
Sbjct: 453 SVLWRTLLGACRVHHHVDLAEESFQQLGKM 482
>gi|357504423|ref|XP_003622500.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355497515|gb|AES78718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 655
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 149/286 (52%), Gaps = 27/286 (9%)
Query: 23 DSFTYSFLIRTCV--TLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
D FT+S L+ L Y + G Q+H++ + F S V V +AL +MY + D+ +
Sbjct: 267 DEFTFSSLLSVISDDALEYYDFGKQVHSLVLRQSFDSDVLVASALINMYAKSENIIDARR 326
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FDE+ RN+V WN +I G + NE + L + M E P E+TI
Sbjct: 327 VFDEMSIRNVVAWNTMIVG----------FGNHGDGNEVMKLVKEMLR-EGFLPDELTIS 375
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+++ + + +H + K F + V+N LI Y+KCG I SA K FE TS
Sbjct: 376 SIISSCGYASAITETLQVHAFAVKLSCQDF-LSVANSLISAYSKCGSITSAFKCFELTS- 433
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
+ +LV+WT++I +A HG+ +++ E FE+M G+KP+R +G +GL
Sbjct: 434 -QPDLVTWTSLIYAYAFHGLAEKSTEMFEKMLSYGIKPDRIAFLGVLSACAHCGLVTKGL 492
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQI 295
+F M +++PD +HY CL+D+L R G + +A E+ +P ++
Sbjct: 493 HYFKLMTNAYQIVPDSEHYTCLVDLLGRYGLINEAFEILRSMPIEV 538
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 112/220 (50%), Gaps = 16/220 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T++ LI C + +G QLH KVGF +V AL +Y GF++++ ++F
Sbjct: 166 DHITFNGLICLCTQFNDIEMGVQLHCFTVKVGFDLDCFVGCALVGLYAKCGFVENARRVF 225
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++ R+LV WNV+++ Y + EA +F M + E T ++
Sbjct: 226 CDVSCRDLVMWNVMVS----------CYVFNSLPEEAFRVFNSMRL-DVVNGDEFTFSSL 274
Query: 143 LPAIWKNG-EVRN-CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
L I + E + + +H ++ F++ D+ V++ LI+ YAK I A ++F++ S+
Sbjct: 275 LSVISDDALEYYDFGKQVHSLVLRQSFDS-DVLVASALINMYAKSENIIDARRVFDEMSI 333
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+N+V+W T+I GF HG G E ++ + M + G P+
Sbjct: 334 --RNVVAWNTMIVGFGNHGDGNEVMKLVKEMLREGFLPDE 371
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 125/276 (45%), Gaps = 28/276 (10%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G QLHA K GF + + + +Y+ +D+ KLF+ELP RN+V+WN++I V
Sbjct: 79 GKQLHAHLIKFGFCQVLSLQNQILSVYLKCQEAEDAKKLFEELPVRNVVSWNIMIRASV- 137
Query: 103 WTGIIDGYSRMNRSNE---ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
G + N S+ + FRRM E P IT ++ + ++ +H
Sbjct: 138 ------GRNDENESSGMRLCFSYFRRMLL-EMMVPDHITFNGLICLCTQFNDIEMGVQLH 190
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
+ K GF+ D V L+ YAKCG + +A ++F D S ++LV W ++S + +
Sbjct: 191 CFTVKVGFD-LDCFVGCALVGLYAKCGFVENARRVFCDVSC--RDLVMWNVMVSCYVFNS 247
Query: 220 MGKEAVENFERMQKVGLKPNRSW------RIGEEGLKFFD------KMVEECEVLPDIKH 267
+ +EA F M+ + + I ++ L+++D +V D+
Sbjct: 248 LPEEAFRVFNSMRLDVVNGDEFTFSSLLSVISDDALEYYDFGKQVHSLVLRQSFDSDVLV 307
Query: 268 YGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
LI++ ++ + A V + I NVV W T
Sbjct: 308 ASALINMYAKSENIIDARRVFDEM--SIRNVVAWNT 341
>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
Length = 599
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 142/290 (48%), Gaps = 61/290 (21%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FT S ++R C+ L + G LH V KVGF+S
Sbjct: 160 DTFTCSSVLRACLNLLDLSNGRILHGVVEKVGFRS------------------------- 194
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
WT +I GY + ++ EA+ LF +M + +E+T++AV
Sbjct: 195 --------------------WTSMIAGYVQCGKAKEAIHLFAKMEEAG-VKCNEVTVVAV 233
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + IH Y + GF ++ +SN LID Y KCGC+ A K+FE+ ++
Sbjct: 234 LAACADLGALDLGMRIHEYSNRHGFKR-NVRISNTLIDMYVKCGCLEEACKVFEE--MEE 290
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+ +VSW+ +I G AMHG +EA+ F M +VG++PN IG EG +F
Sbjct: 291 RTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRF 350
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F M + ++P I+HYGC++D+L RAG L +A E +P + N VVW
Sbjct: 351 FASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPMK-PNGVVW 399
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 99/209 (47%), Gaps = 15/209 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T ++ C L +LG ++H ++ GF+ +V ++ L DMYV G L+++ K+F
Sbjct: 226 NEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVF 285
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+ ER +V+W+ +I GL + R+ EAL LF M+ EP+ +T + +
Sbjct: 286 EEMEERTVVSWSAMIGGL----------AMHGRAEEALRLFSDMSQVG-IEPNGVTFIGL 334
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + + + I C++D ++ G + A + + + +
Sbjct: 335 LHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEAHEFILNMPM-K 393
Query: 203 KNLVSWTTIISGFAMHG---MGKEAVENF 228
N V W ++ +H M +EA+++
Sbjct: 394 PNGVVWGALLGACRVHKNVEMAEEAIKHL 422
>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 553
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 100/340 (29%), Positives = 175/340 (51%), Gaps = 47/340 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF---LKDSS 79
+ FTYSFLI C G Q+H G+ ++V+V T+L ++Y G ++ +
Sbjct: 115 NEFTYSFLIGGCARSRLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKAR 174
Query: 80 KLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNE 118
++FDE+ +RN+V+WN ++ G V+ WT +I G +++ R +
Sbjct: 175 RVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQ 234
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR---GFNAFDIHVS 175
AL LF M + ++ ++A L A + G+++ IH Y ++R G + ++
Sbjct: 235 ALHLFHEMRRAG-VKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLN 293
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
N LI YA CG I A K+F + +++ +SWT++I+GFA G +EA+ F+ MQ++G
Sbjct: 294 NSLIHMYASCGVIDKAYKVF--IGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLG 351
Query: 236 L---KPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRL 281
+P+ IG ++G FF+ M ++ ++P I+HYGC++D+L RAG L
Sbjct: 352 TDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFL 411
Query: 282 EQAEEVASGIPSQITNVVVWRT--GFLRLLINSYFFSPIT 319
++A + +P + N VW G R+ N+ S +
Sbjct: 412 DEAHRLIESMPMK-PNDAVWGALLGGCRIHKNAELASHVA 450
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 107/244 (43%), Gaps = 49/244 (20%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
L++TC T+ Q+H GF ++ L Y++ G L ++ K+F+ + +
Sbjct: 24 LLQTCDTIKKLK---QIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPS 80
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
WN +I G+S+ ++ + L+ RM E EP+E T ++ ++
Sbjct: 81 TTVWNQMIR----------GHSQSETPHKLVELYNRMVEAE-AEPNEFTYSFLIGGCARS 129
Query: 150 GEVRNCQLIHGY---------------------------GEKRGFNAFDIHVS------N 176
+R + +HG G ++ FD V N
Sbjct: 130 RLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWN 189
Query: 177 CLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
L+ Y +CG + A ++F++ + +N+VSWTT+I+G A G K+A+ F M++ G+
Sbjct: 190 SLLAGYVRCGDVDGARRIFDE--MPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGV 247
Query: 237 KPNR 240
K ++
Sbjct: 248 KLDQ 251
>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 616
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 156/311 (50%), Gaps = 35/311 (11%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
F+ +++ C L + G Q+H K +V ++ MY+ G ++ + ++FD
Sbjct: 110 FSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDR 169
Query: 85 LPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALALF 123
+P R++V+WN +I G +K WT +I Y + +AL LF
Sbjct: 170 MPNRDVVSWNSMIAGYLKAGEIELAKKVFETMSDKDVVTWTSMISAYVQNRCPMKALDLF 229
Query: 124 RRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183
R M + P I++VL AI G V + +H Y + + LID Y+
Sbjct: 230 REMLSLGL-RPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYS 288
Query: 184 KCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWR 243
KCG I +A +F S R+N+ W ++ISG A+HG+ +EA++ F M+++ ++PN
Sbjct: 289 KCGYIENAYHVFRSIS-HRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITF 347
Query: 244 IG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+G EEG +F+ M E+ +++P I+HYGC+ID+ RAGRLE A V +P
Sbjct: 348 LGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMP 407
Query: 293 SQITNVVVWRT 303
+ +++ W+
Sbjct: 408 FE-ADLLAWKA 417
>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 148/291 (50%), Gaps = 37/291 (12%)
Query: 43 GTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG-- 99
G LH K GF + V V TAL DMY G L + +FD++ RNLV+WN +I G
Sbjct: 109 GAALHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYM 168
Query: 100 -------------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+V WT +I G+ + EAL FR M P +T++
Sbjct: 169 KNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYEEALECFREMQLAGVV-PDFVTVI 227
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
A++ A G + +H K+ F ++ V N LID YA+CGCI A ++F+ S
Sbjct: 228 AIISACANLGALGLGLWVHRLVMKKEFRD-NVKVLNSLIDMYARCGCIELARQVFDGMS- 285
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGL 249
++NLVSW +II GFA++G+ +A+ F M+K GL+PN + +EGL
Sbjct: 286 -QRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGL 344
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
K F + + P I+HYGCL+D+ RAGRL++A +V +P VV+
Sbjct: 345 KIFADIKRDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKMPMMPNEVVL 395
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 11/164 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T +I C L LG +H + K F+ +V V +L DMY G ++ + ++F
Sbjct: 222 DFVTVIAIISACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVF 281
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + +RNLV+WN II G ++G +++AL+ FR M E EP+ ++ +
Sbjct: 282 DGMSQRNLVSWNSIIVGFA-----VNGL-----ADKALSFFRSMKK-EGLEPNGVSYTSA 330
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG 186
L A G + I ++ N+ I CL+D Y++ G
Sbjct: 331 LTACSHAGLIDEGLKIFADIKRDHRNSPRIEHYGCLVDLYSRAG 374
>gi|449445234|ref|XP_004140378.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Cucumis sativus]
Length = 542
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 93/309 (30%), Positives = 152/309 (49%), Gaps = 39/309 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D TY FL++ L LG +H K G + ++ +L MY S + + K+F
Sbjct: 112 DYLTYPFLVKATSKLLNQELGMAVHVHIVKSGHEIDKFIQNSLIHMYASCRDIASARKVF 171
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
DE+P +NLVTWN ++ G +V W+ +IDGY + EA+A
Sbjct: 172 DEMPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMPEKDVVSWSSLIDGYVKGRVYGEAMA 231
Query: 122 LFRRMAACEYTEP--SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
LF RM+ + P +E+T+++ L A G + + +++H Y + I + L+
Sbjct: 232 LFERMS---FDGPMANEVTLVSALCACAHLGALEHGRMMHRYIVENEL-PLTIVLQTSLV 287
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D YAKCG I A +F S+ +++ W II G A HG+ KEA+ F M+ VG+ P+
Sbjct: 288 DMYAKCGAIHEALTVFRACSLQEADVLIWNAIIGGLATHGLIKEAMNLFCEMKMVGIVPD 347
Query: 240 R-----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
+ EE FFD + + ++P ++HY C++D L RAG++ +A +
Sbjct: 348 EITYLCLLSCCAHGGLVEEAWYFFDCLRKH-GMIPKVEHYACMVDALSRAGQVSEAYQFL 406
Query: 289 SGIPSQITN 297
+P Q T+
Sbjct: 407 CQMPVQPTS 415
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/279 (23%), Positives = 103/279 (36%), Gaps = 57/279 (20%)
Query: 75 LKDSSKLFDEL-PERNL-----VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
+K LF L P R+L + NV W +I +S N ++ +F +M
Sbjct: 47 IKSKLLLFSALSPARDLDYSYKLILNVPNPTTFNWNTLIRAFSNTKNPNPSITVFIKMLQ 106
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
P +T ++ A K +H + K G + D + N LI YA C I
Sbjct: 107 -NGVSPDYLTYPFLVKATSKLLNQELGMAVHVHIVKSG-HEIDKFIQNSLIHMYASCRDI 164
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW------ 242
SA K+F++ + RKNLV+W ++ G+A G A E F M + K SW
Sbjct: 165 ASARKVFDE--MPRKNLVTWNAMLDGYAKCGDLNMAREVFNLMPE---KDVVSWSSLIDG 219
Query: 243 ----RIGEEGLKFFDKM---------VEECEVLPDIKHYGCL------------------ 271
R+ E + F++M V L H G L
Sbjct: 220 YVKGRVYGEAMALFERMSFDGPMANEVTLVSALCACAHLGALEHGRMMHRYIVENELPLT 279
Query: 272 -------IDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+D+ + G + +A V Q +V++W
Sbjct: 280 IVLQTSLVDMYAKCGAIHEALTVFRACSLQEADVLIWNA 318
>gi|356502600|ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 103/333 (30%), Positives = 160/333 (48%), Gaps = 43/333 (12%)
Query: 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF 74
H+ L P D++T ++++ C L +LG +H SK+G ++V +L MY G
Sbjct: 98 HNGLGP--DNYTIPYVLKACAALRDCSLGKMVHGYSSKLGLVFDIFVGNSLMAMYSVCGD 155
Query: 75 LKDSSKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRM 113
+ + +FDE+P + V+W+V+I+G K W +I GY +
Sbjct: 156 VIAARHVFDEMPRLSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISGYVQN 215
Query: 114 NRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIH 173
+ E L LF R+ + P E +++L A G + IH Y ++ + I
Sbjct: 216 SCFKEGLYLF-RLLQLTHVVPDESIFVSILSACAHLGALDIGIWIHRYLNRKTV-SLSIR 273
Query: 174 VSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
+S L+D YAKCG + A +LF+ S+ +++V W +ISG AMHG G A++ F M+K
Sbjct: 274 LSTSLLDMYAKCGNLELAKRLFD--SMPERDIVCWNAMISGLAMHGDGASALKMFSEMEK 331
Query: 234 VGLKPNRSWRI-----------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLE 282
G+KP+ I EGL+ DKM E+ P +HYGCL+D+L RAG
Sbjct: 332 TGIKPDDITFIAVFTACSYSGMAHEGLQLLDKMSSLYEIEPKSEHYGCLVDLLSRAGLFG 391
Query: 283 QAEEVASGIPSQITN----VVVWRTGFLRLLIN 311
+A + I S N + WR FL N
Sbjct: 392 EAMVMIRRITSTSWNGSEETLAWR-AFLSACCN 423
>gi|359487598|ref|XP_002278925.2| PREDICTED: pentatricopeptide repeat-containing protein At3g56550
[Vitis vinifera]
Length = 603
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 162/312 (51%), Gaps = 30/312 (9%)
Query: 6 QLQQIYIHSH--SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNT 63
QLQ I ++H S D++T+SFL++ C ++H + G+ V + T
Sbjct: 106 QLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCT 165
Query: 64 ALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALF 123
L Y G ++ + K+F+E+P R+LV+WN +I+ Y + EAL ++
Sbjct: 166 NLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISC----------YCQTGLHEEALKMY 215
Query: 124 RRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY-GEKRGFNAFDIHVSNCLIDTY 182
+M T++++L + G + +H + GE+R +I V N LID Y
Sbjct: 216 DQMRISNVGFDG-FTLVSLLSSCAHVGALHMGVQMHRFAGERRLVE--NIFVGNALIDMY 272
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW 242
AKCG + SA +F S+ ++++ +W ++I G+ +HG G EA+ F M G++PN
Sbjct: 273 AKCGSLASALSIF--NSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSIT 330
Query: 243 RIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
+G +EG+++F M E + P IKHYGC++D+ RAG+L++A EV
Sbjct: 331 FLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSS 390
Query: 292 PSQITNVVVWRT 303
PSQ + V+WRT
Sbjct: 391 PSQ-HDPVLWRT 401
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 17/218 (7%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD FT L+ +C + ++G Q+H + +++V AL DMY G L + +
Sbjct: 225 FDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSI 284
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+ +P+R++ TWN +I GY R +EA+ F M P+ IT L
Sbjct: 285 FNSMPKRDVFTWNSMIV----------GYGVHGRGDEAITFFGSMLMAG-VRPNSITFLG 333
Query: 142 VLPAIWKNGEVR-NCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+L G V+ Q H + H C++D + + G + A ++ +S
Sbjct: 334 LLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHY-GCMVDLFGRAGKLKEALEVIR-SSP 391
Query: 201 DRKNLVSWTTIISGFAMH---GMGKEAVENFERMQKVG 235
+ + V W T++ +H +G+ A+ N ++ +G
Sbjct: 392 SQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLG 429
>gi|242062638|ref|XP_002452608.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
gi|241932439|gb|EES05584.1| hypothetical protein SORBIDRAFT_04g028970 [Sorghum bicolor]
Length = 485
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 98/294 (33%), Positives = 150/294 (51%), Gaps = 40/294 (13%)
Query: 45 QLHAVFSKVGFQ---SHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV 101
Q+HA+ K G S V V+T+L Y LG + D+ K+FD +P+R +VTWNV++ LV
Sbjct: 78 QIHALLVKSGVPRTVSDVQVSTSLIRAYARLGRVCDARKVFDGMPDRTVVTWNVLLDALV 137
Query: 102 K---------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+ W II G++R + EA+ LF M P E T++
Sbjct: 138 RDGDLDAAWEVFVEMPQRNVVSWNTIIAGFTRNGWAQEAVDLFVEMTVAYGLAPDEATMV 197
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+ A+ G + + HGY +R F+ D + LI Y +CG + +A F SV
Sbjct: 198 GFVSAVRDIGLLGIGKSAHGYVLRREFS-LDGALGVALISMYTRCGSMGAAHSCF--LSV 254
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
KN+ WT++I+GFA HG ++A+ F M++VG++PN + EG
Sbjct: 255 TTKNVEHWTSLIAGFAAHGQPEKALRLFAEMRRVGIEPNGVTFVAVLNACNHGGLVSEGF 314
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
K+FD M + P I+HYGCL+D+L RAG L++A +AS +P V+W +
Sbjct: 315 KYFDLM-RSMGIRPMIQHYGCLVDLLGRAGFLKEAFNLASNLPED-PGFVIWSS 366
>gi|242033481|ref|XP_002464135.1| hypothetical protein SORBIDRAFT_01g012973 [Sorghum bicolor]
gi|241917989|gb|EER91133.1| hypothetical protein SORBIDRAFT_01g012973 [Sorghum bicolor]
Length = 576
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 148/273 (54%), Gaps = 25/273 (9%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
+R C +L+ +GTQLHA+ +K G + + +L MY G + +++ LFDE+ ++
Sbjct: 313 LRVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDT 372
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
+++ +++ GY + ++ EA +F++M AC +P T+++++PA
Sbjct: 373 ISYGALLS----------GYVQNGKAEEAFLVFKKMQACN-VQPDIATMVSLIPACSHLA 421
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
+++ + HG RG A + + N LID YAKCG I + ++F+ +++VSW T
Sbjct: 422 ALQHGRCSHGSVIIRGL-ALETSICNSLIDMYAKCGRIDLSRQVFDKMPA--RDIVSWNT 478
Query: 211 IISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEEC 259
+I+G+ +HG+GKEA F M+ G +P+ I EG +FD M +
Sbjct: 479 MIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKY 538
Query: 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+LP ++HY C++D+L R G L++A + +P
Sbjct: 539 GILPRMEHYICMVDLLARGGFLDEAYQFIQSMP 571
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 109/221 (49%), Gaps = 16/221 (7%)
Query: 18 LPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD 77
+PP + +T+ F+++ C L+ G +HA + VG + ++V+TAL D+Y+
Sbjct: 95 VPP--NKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGP 152
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
++ +F ++P R++V WN ++ GY+ + A+A M P+
Sbjct: 153 AANVFAKMPMRDVVAWNAMLA----------GYANHGMYHHAIAHLLDMQDRGGLRPNAS 202
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGF--NAFDIHVSNCLIDTYAKCGCIFSASKLF 195
T++++LP + ++G + +H Y + N + + L+D YAKC + A ++F
Sbjct: 203 TLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVF 262
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
+V +N V+W+ +I GF + EA F+ M G+
Sbjct: 263 HGMTV--RNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGM 301
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 126/283 (44%), Gaps = 46/283 (16%)
Query: 43 GTQLHAVFSKVGF---QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG 99
GT +HA + + V + TAL DMY L + ++F + RN VTW+ +I G
Sbjct: 220 GTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGG 279
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
V +R EA LF+ M S ++ + L ++R +H
Sbjct: 280 FVLC----------DRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLH 329
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
K G +A D+ N L+ YAK G I A+ LF++ ++ K+ +S+ ++SG+ +G
Sbjct: 330 ALLAKSGIHA-DLTAGNSLLSMYAKAGLINEATMLFDEIAI--KDTISYGALLSGYVQNG 386
Query: 220 MGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGC--------- 270
+EA F++MQ ++P+ + + ++ C L ++H C
Sbjct: 387 KAEEAFLVFKKMQACNVQPDIATMV---------SLIPACSHLAALQHGRCSHGSVIIRG 437
Query: 271 ----------LIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
LID+ + GR++ + +V +P++ ++V W T
Sbjct: 438 LALETSICNSLIDMYAKCGRIDLSRQVFDKMPAR--DIVSWNT 478
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 24/167 (14%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
FLV+K++Q + D T LI C L+ G H G
Sbjct: 392 FLVFKKMQACNVQP--------DIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETS 443
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
+ +L DMY G + S ++FD++P R++V+WN +I GY EA
Sbjct: 444 ICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIA----------GYGIHGLGKEAT 493
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQ-----LIHGYG 162
LF M + EP ++T + ++ A +G V + + H YG
Sbjct: 494 TLFLSMKNQGF-EPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYG 539
>gi|296089864|emb|CBI39683.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 162/312 (51%), Gaps = 30/312 (9%)
Query: 6 QLQQIYIHSH--SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNT 63
QLQ I ++H S D++T+SFL++ C ++H + G+ V + T
Sbjct: 88 QLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCT 147
Query: 64 ALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALF 123
L Y G ++ + K+F+E+P R+LV+WN +I+ Y + EAL ++
Sbjct: 148 NLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISC----------YCQTGLHEEALKMY 197
Query: 124 RRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY-GEKRGFNAFDIHVSNCLIDTY 182
+M T++++L + G + +H + GE+R +I V N LID Y
Sbjct: 198 DQMRISNVGFDG-FTLVSLLSSCAHVGALHMGVQMHRFAGERRLVE--NIFVGNALIDMY 254
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW 242
AKCG + SA +F S+ ++++ +W ++I G+ +HG G EA+ F M G++PN
Sbjct: 255 AKCGSLASALSIF--NSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSIT 312
Query: 243 RIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
+G +EG+++F M E + P IKHYGC++D+ RAG+L++A EV
Sbjct: 313 FLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSS 372
Query: 292 PSQITNVVVWRT 303
PSQ + V+WRT
Sbjct: 373 PSQ-HDPVLWRT 383
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 17/218 (7%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD FT L+ +C + ++G Q+H + +++V AL DMY G L + +
Sbjct: 207 FDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSI 266
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+ +P+R++ TWN +I GY R +EA+ F M P+ IT L
Sbjct: 267 FNSMPKRDVFTWNSMIV----------GYGVHGRGDEAITFFGSMLMAG-VRPNSITFLG 315
Query: 142 VLPAIWKNGEVR-NCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+L G V+ Q H + H C++D + + G + A ++ +S
Sbjct: 316 LLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHY-GCMVDLFGRAGKLKEALEVIR-SSP 373
Query: 201 DRKNLVSWTTIISGFAMH---GMGKEAVENFERMQKVG 235
+ + V W T++ +H +G+ A+ N ++ +G
Sbjct: 374 SQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLG 411
>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
Length = 668
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 151/315 (47%), Gaps = 37/315 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ C L LG ++H + G + + AL DMYV G L+ LF
Sbjct: 254 DEVTMIGVVSACAQLESLKLGREIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLF 313
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
D + ++ +V+W +I G +V W +I + N S EAL
Sbjct: 314 DNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALE 373
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LFR M +P ++T+L L A + G + H Y +K + D+ + LID
Sbjct: 374 LFREMQWSN-MKPDKVTMLHCLSACSQLGALDTGMWTHNYIKKHNL-SLDVALGTALIDM 431
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG + A ++F + + R+N ++WT II G A++G +A+ F +M GL P+
Sbjct: 432 YAKCGNMTKALQVFNE--MPRRNSLTWTAIIGGLALYGNVNDAIFYFSKMIDSGLMPDEI 489
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+G EEG K+FD+M + P KHY C++++L RAG LE+AEE+
Sbjct: 490 TFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQPKHYSCMVNLLGRAGLLEEAEELIKT 549
Query: 291 IPSQITNVVVWRTGF 305
+P + + +VW F
Sbjct: 550 MPME-ADAMVWGALF 563
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 157/321 (48%), Gaps = 59/321 (18%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++TYSFL + C L +G ++ K+GF +Y+ + M VS+G + K+F
Sbjct: 153 DNYTYSFLFKVCANLVLSYMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVF 212
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE R+LV+WN +I+GY R + EA+ ++++M E+ +P E+T++ V
Sbjct: 213 DEGCVRDLVSWN----------SLINGYVRRRQPREAMGIYQQMIT-EHVKPDEVTMIGV 261
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A + ++ + IH Y E+ G N I + N L+D Y KCG + + LF++ + +
Sbjct: 262 VSACAQLESLKLGREIHRYIEESGLN-LKISLVNALMDMYVKCGDLEAGKVLFDN--MRK 318
Query: 203 KNLVSWTTIISGFAMHGM----GK---------------------------EAVENFERM 231
K +VSWTT+I G+A +G+ GK EA+E F M
Sbjct: 319 KTVVSWTTMIVGYAKNGLLDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREM 378
Query: 232 QKVGLKPNR---------SWRIG--EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGR 280
Q +KP++ ++G + G+ + +++ + D+ LID+ + G
Sbjct: 379 QWSNMKPDKVTMLHCLSACSQLGALDTGM-WTHNYIKKHNLSLDVALGTALIDMYAKCGN 437
Query: 281 LEQAEEVASGIPSQITNVVVW 301
+ +A +V + +P + N + W
Sbjct: 438 MTKALQVFNEMPRR--NSLTW 456
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 102/240 (42%), Gaps = 37/240 (15%)
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM---AACE---YTE 133
K+ + L N+ +WN +I G V+ + L L++RM A C YT
Sbjct: 108 KILNNLQNPNVFSWNAVIRGCVE----------SENPQKGLVLYKRMLTRAGCRPDNYTY 157
Query: 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASK 193
+ A L + E I G K GF+ D+++ N +I G A K
Sbjct: 158 SFLFKVCANLVLSYMGFE------ILGQVLKMGFDK-DMYLYNGIIHMLVSVGESGLAHK 210
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGE------- 246
+F++ V ++LVSW ++I+G+ +EA+ +++M +KP+ IG
Sbjct: 211 VFDEGCV--RDLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACAQL 268
Query: 247 EGLKF---FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
E LK + +EE + I L+D+ + G LE + + + + VV W T
Sbjct: 269 ESLKLGREIHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKK--TVVSWTT 326
>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
Length = 621
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 154/291 (52%), Gaps = 29/291 (9%)
Query: 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF 74
+S L P DS+ + +++ C G ++H+ K+G S+ + L ++Y G
Sbjct: 123 NSSLVP--DSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSSNRSIRIKLIELYGKCGA 180
Query: 75 LKDSSKLFDELPERNLVTWNVIIT--------GLVKWTGIIDGYSRMNRSNEALALFRRM 126
+D+ ++FDE+PER++V V+I V WT +IDG R SN AL +FR M
Sbjct: 181 FEDARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNM 240
Query: 127 AACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR--GFNAFDIHVSNCLIDTYAK 184
E P+E+TI+ VL A + G ++ + + Y +K N F V LI+ Y++
Sbjct: 241 QR-EDVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIELNHF---VGGALINMYSR 296
Query: 185 CGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI 244
CG I A ++FE + KN++++ ++I GFA+HG EAVE F + K G P+ +
Sbjct: 297 CGDIDEAQRVFEQ--MKEKNVITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFV 354
Query: 245 G-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
G E G + F M ++ + P I+HYGC++D+L R GRLE+A
Sbjct: 355 GVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDLLGRLGRLEEA 405
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/265 (21%), Positives = 106/265 (40%), Gaps = 55/265 (20%)
Query: 71 SLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE 130
S+G+ +SK+F N+ + +I GLV DG + L+ +M
Sbjct: 79 SIGY---ASKIFSHTQNPNVYLYTALIDGLVLSCYYTDG----------IHLYYQMINSS 125
Query: 131 YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190
P + +VL A + ++ + +H K G ++ + + LI+ Y KCG
Sbjct: 126 LV-PDSYAVTSVLKACGCHLALKEGREVHSQVLKLGLSS-NRSIRIKLIELYGKCGAFED 183
Query: 191 ASKLFEDTSVDR----------------KNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
A ++F++ K+ V WT +I G +G A+E F MQ+
Sbjct: 184 ARRVFDEMPERDVVASTVMINYYFDHGIKDTVCWTAMIDGLVRNGESNRALEVFRNMQRE 243
Query: 235 GLKPNR--------------SWRIGEEGLKFFDKMVEECEVLPDIKHY--GCLIDILERA 278
+ PN + ++G + DK E + H+ G LI++ R
Sbjct: 244 DVMPNEVTIVCVLSACSELGALQLGRWVRSYMDKHRIE------LNHFVGGALINMYSRC 297
Query: 279 GRLEQAEEVASGIPSQITNVVVWRT 303
G +++A+ V + + NV+ + +
Sbjct: 298 GDIDEAQRVFEQMKEK--NVITYNS 320
>gi|125542569|gb|EAY88708.1| hypothetical protein OsI_10183 [Oryza sativa Indica Group]
Length = 510
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 102/320 (31%), Positives = 167/320 (52%), Gaps = 49/320 (15%)
Query: 23 DSFTYSFLIRTCV-TLSYPNLGTQLHAVFSKVGF----QSHVYVNTALGDMYVSLGFLKD 77
D+FT++F +++C +S L + LHA K G SHV+V+ AL Y S + D
Sbjct: 120 DAFTFTFALKSCSRCVSQRRLPSDLHAQAIKHGCLGAGSSHVHVHNALLHGYSSRAAVGD 179
Query: 78 SSKLFDELPERNLVTWNVIIT---------------------GLVKWTGIIDGYSRMNRS 116
+ ++FDE+P R++++++ ++T +V WT +I Y+R R
Sbjct: 180 ARRVFDEMPARDVISFSGLLTLHLKANDLDAARVVFDQMPHRDVVSWTAMISAYARARRP 239
Query: 117 NEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN 176
EALALF M +P E+T+L+V+ A G++ + + Y + GF + + + N
Sbjct: 240 REALALFDAMP----VQPDEVTMLSVVSACTALGDLATGERVCQYVDSNGFG-WMVSLRN 294
Query: 177 CLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG- 235
L+D YAKCG + A LF+ +V ++L SW T IS +A HG + V F RM G
Sbjct: 295 ALMDMYAKCGSLTEARNLFDGMTV--RSLASWNTFISAYASHGDVESTVALFHRMLADGK 352
Query: 236 -LKPNRSWRIG-----------EEGLKFFDKMVEE--CEVLPDIKHYGCLIDILERAGRL 281
+KP+ + + EEG F+ ++ +V I+HYGC++D+L RAG+L
Sbjct: 353 SVKPDGTTLLAVLTAYAHKGFVEEGRAMFNAILSGNYGKVDLTIEHYGCMVDLLGRAGQL 412
Query: 282 EQAEEVASGIPSQITNVVVW 301
E+A ++ +P +N VVW
Sbjct: 413 EEAYKMIEQMPIP-SNSVVW 431
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 90/222 (40%), Gaps = 19/222 (8%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76
P+ P D T ++ C L G ++ GF V + AL DMY G L
Sbjct: 250 PVQP--DEVTMLSVVSACTALGDLATGERVCQYVDSNGFGWMVSLRNALMDMYAKCGSLT 307
Query: 77 DSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM-AACEYTEPS 135
++ LFD + R+L +WN I+ Y+ +ALF RM A + +P
Sbjct: 308 EARNLFDGMTVRSLASWNTFIS----------AYASHGDVESTVALFHRMLADGKSVKPD 357
Query: 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN--CLIDTYAKCGCIFSASK 193
T+LAVL A G V + + + D+ + + C++D + G + A K
Sbjct: 358 GTTLLAVLTAYAHKGFVEEGRAMFNAILSGNYGKVDLTIEHYGCMVDLLGRAGQLEEAYK 417
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQ 232
+ E + N V W ++ HG M + AV+ +
Sbjct: 418 MIEQMPIP-SNSVVWGALLGACRTHGDINMAERAVQKLRSLN 458
>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 727
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 144/273 (52%), Gaps = 25/273 (9%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
+T ++ C + Y G QLH+ K+GF+ H++ TAL DMY G L D+ K FD
Sbjct: 323 YTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDC 382
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
L ER++ WT +I GY + + + EAL L+RRM P++ T+ +VL
Sbjct: 383 LQERDVAL----------WTSLISGYVQNSDNEEALILYRRMKTAGII-PNDPTMASVLK 431
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A + + +HG+ K GF ++ + + L Y+KCG + + +F T K+
Sbjct: 432 ACSSLATLELGKQVHGHTIKHGF-GLEVPIGSALSTMYSKCGSLEDGNLVFRRTP--NKD 488
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFD 253
+VSW +ISG + +G G EA+E FE M G++P+ + E G +F+
Sbjct: 489 VVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFN 548
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
M ++ + P + HY C++D+L RAG+L++A+E
Sbjct: 549 MMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKE 581
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 117/226 (51%), Gaps = 14/226 (6%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L +++T + + + +L +G Q HA+ K+ +YV+T+L MY G ++D K
Sbjct: 115 LPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLK 174
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRR-MAACEYTEPSEITI 139
+F +PERN TW+ +++ GY+ R EA+ +F + E S+
Sbjct: 175 VFAYMPERNTYTWSTMVS----------GYATRGRVEEAIKVFNLFLREKEEGSDSDYVF 224
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
AVL ++ V + IH K G F + +SN L+ Y+KC + A K+F D+S
Sbjct: 225 TAVLSSLAATIYVGLGRQIHCITIKNGLLGF-VALSNALVTMYSKCESLNEACKMF-DSS 282
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG 245
DR N ++W+ +++G++ +G EAV+ F RM G+KP+ +G
Sbjct: 283 GDR-NSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVG 327
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 13/187 (6%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G +H + G + + L + Y G L + +F+ + +++V+WN +ITG +
Sbjct: 33 GRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQ 92
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
GI Y+ M LFR M A + P+ T+ + A + H
Sbjct: 93 NGGISSSYTVMQ-------LFREMRAQDIL-PNAYTLAGIFKAESSLQSSTVGRQAHALV 144
Query: 163 EKRGFNAF-DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
K ++F DI+V L+ Y K G + K+F + +N +W+T++SG+A G
Sbjct: 145 VK--MSSFGDIYVDTSLVGMYCKAGLVEDGLKVF--AYMPERNTYTWSTMVSGYATRGRV 200
Query: 222 KEAVENF 228
+EA++ F
Sbjct: 201 EEAIKVF 207
>gi|326504712|dbj|BAK06647.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 658
Score = 151 bits (381), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 93/304 (30%), Positives = 144/304 (47%), Gaps = 35/304 (11%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
LI+ C + G QLH V K GF +H +V L Y S L + F + +
Sbjct: 283 LIKVCARHAAVLEGQQLHTVILKDGFDAHPFVQATLIHFYGSCDLLDIARMQFKLSDKSH 342
Query: 90 LVTWNVIITGL---------------------VKWTGIIDGYSRMNRSNEALALFRRMAA 128
+ +WN +++GL + W+ ++ GY + SN+AL LF M
Sbjct: 343 IASWNALMSGLLHRNLMHEARQLFDDMPERDTISWSTLLSGYVQSGHSNKALQLFYLMLG 402
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
EP+++T+ + L A+ +G + + IH Y D ++S LID YAKCG +
Sbjct: 403 AG-VEPNDVTLASTLSAVADSGMLEQGRFIHDYIISNSIQLTD-NLSAGLIDMYAKCGSV 460
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG--- 245
A +LF ++ W II A+HG ++E F +Q+ +KPN IG
Sbjct: 461 ADAIQLFSHVKHKLSSVSPWNAIICSLAIHGHAHTSLELFLELQRTNIKPNSVTYIGVLN 520
Query: 246 --------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITN 297
EG F+ M E + P IKHYGC++D+L RAG LE+AE + +P + ++
Sbjct: 521 ACCHAGLVTEGRHHFESMSREYGIQPTIKHYGCMVDLLGRAGHLEEAENLIQMMPMR-SD 579
Query: 298 VVVW 301
VV+W
Sbjct: 580 VVIW 583
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 77/354 (21%), Positives = 143/354 (40%), Gaps = 68/354 (19%)
Query: 31 IRTCVTLSYPNLGTQL-HAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
+ T + L P + + H V + G + V T L Y + + + ++F+++P++N
Sbjct: 150 VLTALALERPPVPVGVAHGVTVRRGLNGFLIVATNLVHAYAAASQVCFAREIFEQMPDKN 209
Query: 90 LVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALALFRRMAA 128
VTWN ++ G +K W IIDGY R + ++EAL + M A
Sbjct: 210 TVTWNAMLNGYLKAGMLPMAAEVFGRIPERDAVSWLTIIDGYIRADCTSEALRAYVAMMA 269
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC--- 185
T + ++ ++ ++ V Q +H K GF+A V LI Y C
Sbjct: 270 EVDTRGNAALLVDLIKVCARHAAVLEGQQLHTVILKDGFDAHPF-VQATLIHFYGSCDLL 328
Query: 186 ----------------------------GCIFSASKLFEDTSVDRKNLVSWTTIISGFAM 217
+ A +LF+D + ++ +SW+T++SG+
Sbjct: 329 DIARMQFKLSDKSHIASWNALMSGLLHRNLMHEARQLFDD--MPERDTISWSTLLSGYVQ 386
Query: 218 HGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKFFDKMVEECEVLPDIK 266
G +A++ F M G++PN + E+G D ++ L D
Sbjct: 387 SGHSNKALQLFYLMLGAGVEPNDVTLASTLSAVADSGMLEQGRFIHDYIISNSIQLTDNL 446
Query: 267 HYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITL 320
G LID+ + G + A ++ S + ++++V W L I+ + + + L
Sbjct: 447 SAG-LIDMYAKCGSVADAIQLFSHVKHKLSSVSPWNAIICSLAIHGHAHTSLEL 499
>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 702
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 145/291 (49%), Gaps = 27/291 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D + ++ C L LG + + G + + Y+ +AL MY G L S ++F
Sbjct: 218 DEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIF 277
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +P R+ +TWN I+ Y++ ++EA++LF M +P+++T+ AV
Sbjct: 278 DGMPSRDFITWNAAISA----------YAQNGMADEAISLFHSMKE-NGVDPNKVTLTAV 326
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + + + Y RG DI V+ LID YAKCG + SA ++F D + R
Sbjct: 327 LSACASIGALDLGKQMDEYATHRGLQ-HDIFVATALIDMYAKCGSLESAQRVFND--MPR 383
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVG--LKPNRSWRIG-----------EEGL 249
KN SW +IS A HG KEA+ FERM G +PN + +EG
Sbjct: 384 KNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGY 443
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
+ FD M ++P I+HY C++D+L RAG L +A +V +P + NV +
Sbjct: 444 RLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTL 494
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 150/302 (49%), Gaps = 31/302 (10%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
+Y Q++ + I SP ++FT+ F+ C L + H K+G + +
Sbjct: 104 LYHQMKTLNI---SP-----NNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTV 155
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
++ MY G + K+FDE+ E++LV+WN +++ GY+++ + EA+ +
Sbjct: 156 NSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLS----------GYAKLGFAREAVEV 205
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
F R+ EP E+++++VL A + G++ + + G+ +RG + ++ + LI Y
Sbjct: 206 FGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKV-NSYIGSALISMY 264
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-- 240
+KCG + S+ ++F+ + ++ ++W IS +A +GM EA+ F M++ G+ PN+
Sbjct: 265 SKCGELVSSRRIFD--GMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVT 322
Query: 241 -------SWRIGEEGL-KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
IG L K D+ + DI LID+ + G LE A+ V + +P
Sbjct: 323 LTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMP 382
Query: 293 SQ 294
+
Sbjct: 383 RK 384
>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
[Vitis vinifera]
Length = 612
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 152/302 (50%), Gaps = 35/302 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F+++ ++ CV L L Q+H GF S+V +++++ D YV G + D+ KLF
Sbjct: 191 NGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLF 250
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
DE+ R+++ W +++G K WT +I GY+R ++AL
Sbjct: 251 DEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALE 310
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF +M + P + T + L A +++ + IH Y + F I VS LID
Sbjct: 311 LFTKMMLF-HVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVS-ALIDM 368
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR- 240
Y+KCG + K+F D ++ ++V W TIIS A HG G+EA++ + M + G KP++
Sbjct: 369 YSKCGSLGIGRKVF-DLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKI 427
Query: 241 ----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+ ++GL FF+ M + ++P +HY CLID+L RAG E+ +
Sbjct: 428 TFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEK 487
Query: 291 IP 292
+P
Sbjct: 488 MP 489
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 135/318 (42%), Gaps = 79/318 (24%)
Query: 39 YPNLGTQLHA--VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVI 96
Y G ++ A VF K+ ++ N L Y LG +K + KLFD++PE+++V+WN +
Sbjct: 105 YAKCGKEVEARKVFDKMSARNLYSWNNMLSG-YAKLGMIKPARKLFDKMPEKDVVSWNTM 163
Query: 97 ITGLVK---WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVR 153
+ + W + YS FR++ + + + VL K EV
Sbjct: 164 VIAHAQCGYWDEALRFYSE----------FRQLG----IQCNGFSFAGVLTVCVKLKEVG 209
Query: 154 NCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS-------------- 199
+ +HG GF + ++ +S+ ++D Y KCG + A KLF++ S
Sbjct: 210 LTRQVHGQILVAGFLS-NVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGY 268
Query: 200 ---------------VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI 244
+ KN VSWT +ISG+A +GMG +A+E F +M ++P++
Sbjct: 269 AKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQF--- 325
Query: 245 GEEGLKFFDKMVEECEVLPDIKH-------------------YGCLIDILERAGRLEQAE 285
F + C + +KH LID+ + G L
Sbjct: 326 ------TFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGR 379
Query: 286 EVASGIPSQITNVVVWRT 303
+V + +++ +VV+W T
Sbjct: 380 KVFDLMGNKL-DVVLWNT 396
>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 792
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 142/269 (52%), Gaps = 26/269 (9%)
Query: 46 LHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTG 105
+H K F SH V+TAL +Y L ++ + KLFDE PE++L +WN +I+
Sbjct: 341 IHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMIS------- 393
Query: 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
GY++ + +A++LFR M E++ P+ +TI +L A + G + + +H
Sbjct: 394 ---GYTQNGLTEDAISLFREMQNSEFS-PNPVTITCILSACAQLGALSLGKWVHDLVRST 449
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225
F + I+VS LI YAKCG I A +LF+ + +KN V+W T+ISG+ +HG G+EA+
Sbjct: 450 DFES-SIYVSTALIGMYAKCGSIAEARRLFD--FMPKKNEVTWNTMISGYGLHGHGQEAL 506
Query: 226 ENFERMQKVGLKPN-----------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDI 274
F M G+ P + +EG + F+ M+ P +KHY C++DI
Sbjct: 507 TIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDI 566
Query: 275 LERAGRLEQAEEVASGIPSQITNVVVWRT 303
L RAG L++A + +P Q VW T
Sbjct: 567 LGRAGHLQRALQFIEAMPIQ-PGPSVWET 594
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 130/292 (44%), Gaps = 29/292 (9%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D+ T ++ L LG Q+H++ +K G SH YV T +Y G +K +S L
Sbjct: 219 LDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTL 278
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F E ++V +N +I GY+ + +L+LF+ + S T+++
Sbjct: 279 FREFRRPDIVAYN----------AMIHGYTSNGETELSLSLFKELMLSGAKLKSS-TLVS 327
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
++P +G + IHGY K F + VS L Y+K I SA KLF+++
Sbjct: 328 LVPV---SGHLMLIYAIHGYSLKSNFLSH-TSVSTALTTVYSKLNEIESARKLFDESP-- 381
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN---------RSWRIGEEGL-KF 251
K+L SW +ISG+ +G+ ++A+ F MQ PN ++G L K+
Sbjct: 382 EKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKW 441
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+V + I LI + + G + +A + +P + N V W T
Sbjct: 442 VHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKK--NEVTWNT 491
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 101/219 (46%), Gaps = 13/219 (5%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S TY+F I G +H G S + + + + MY ++D+ K+F
Sbjct: 118 NSSTYAFAISAASGFRDDRAGCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVF 177
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +PE++ + WN +I+ GY + E++ +FR + T T+L +
Sbjct: 178 DRMPEKDTILWNTMIS----------GYRKNEMYVESIQVFRDLINESCTRLDTTTLLDI 227
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LPA+ + E+R IH K G + D +V I Y+KCG I AS LF + R
Sbjct: 228 LPAVAELQELRLGMQIHSLATKTGCYSHD-YVLTGFISLYSKCGKIKMASTLFRE--FRR 284
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
++V++ +I G+ +G + ++ F+ + G K S
Sbjct: 285 PDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSS 323
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 88/198 (44%), Gaps = 22/198 (11%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T + ++ C L +LG +H + F+S +YV+TAL MY G + ++ +LFD +
Sbjct: 422 TITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFM 481
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
P++N VTWN +I+ GY EAL +F M P+ +T L VL A
Sbjct: 482 PKKNEVTWNTMIS----------GYGLHGHGQEALTIFSEMLNSGIA-PTPVTFLCVLYA 530
Query: 146 IWKNGEVRNCQ-----LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
G V+ +IH YG + + C++D + G + A + E +
Sbjct: 531 CSHAGLVKEGDEIFNSMIHRYGFEPSVKHY-----ACVVDILGRAGHLQRALQFIEAMPI 585
Query: 201 DRKNLVSWTTIISGFAMH 218
V W T++ +H
Sbjct: 586 QPGPSV-WETLLGACRIH 602
Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 83/187 (44%), Gaps = 13/187 (6%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
Q HA GF++ + + T L LG + + +F + ++ +NV++
Sbjct: 38 QTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMR------ 91
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
G+S + +LA+F + +P+ T + A + R +IHG
Sbjct: 92 ----GFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIV 147
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
G ++ ++ + + ++ Y K + A K+F+ + K+ + W T+ISG+ + M E+
Sbjct: 148 DGCDS-ELLLGSNIVKMYFKFWRVEDARKVFD--RMPEKDTILWNTMISGYRKNEMYVES 204
Query: 225 VENFERM 231
++ F +
Sbjct: 205 IQVFRDL 211
>gi|147838430|emb|CAN76592.1| hypothetical protein VITISV_020294 [Vitis vinifera]
Length = 978
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 162/312 (51%), Gaps = 30/312 (9%)
Query: 6 QLQQIYIHSH--SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNT 63
QLQ I ++H S D++T+SFL++ C ++H + G+ V + T
Sbjct: 481 QLQAIVFYNHMLSASHARPDTYTFSFLLKACEEAKEEGKCREVHGFIIRFGYDQDVVLCT 540
Query: 64 ALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALF 123
L Y G ++ + K+F+E+P R+LV+WN +I+ Y + EAL ++
Sbjct: 541 NLIRSYAGNGLIETAHKVFEEMPARDLVSWNSMISC----------YCQTGLHEEALKMY 590
Query: 124 RRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY-GEKRGFNAFDIHVSNCLIDTY 182
+M T++++L + G + +H + GE+R +I V N LID Y
Sbjct: 591 DQMRISNVGFDG-FTLVSLLSSCAHVGALHMGVQMHRFAGERRLVE--NIFVGNALIDMY 647
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW 242
AKCG + SA +F S+ ++++ +W ++I G+ +HG G EA+ F M G++PN
Sbjct: 648 AKCGSLASALSIF--NSMPKRDVFTWNSMIVGYGVHGRGDEAITFFGSMLMAGVRPNSIT 705
Query: 243 RIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
+G +EG+++F M E + P IKHYGC++D+ RAG+L++A EV
Sbjct: 706 FLGLLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHYGCMVDLFGRAGKLKEALEVIRSS 765
Query: 292 PSQITNVVVWRT 303
PSQ + V+WRT
Sbjct: 766 PSQ-HDPVLWRT 776
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 97/218 (44%), Gaps = 17/218 (7%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD FT L+ +C + ++G Q+H + +++V AL DMY G L + +
Sbjct: 600 FDGFTLVSLLSSCAHVGALHMGVQMHRFAGERRLVENIFVGNALIDMYAKCGSLASALSI 659
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+ +P+R++ TWN +I GY R +EA+ F M P+ IT L
Sbjct: 660 FNSMPKRDVFTWNSMIV----------GYGVHGRGDEAITFFGSMLMAG-VRPNSITFLG 708
Query: 142 VLPAIWKNGEVRN-CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+L G V+ Q H + H C++D + + G + A ++ +S
Sbjct: 709 LLCGCSHQGLVKEGVQYFHMMSSEFNLKPGIKHY-GCMVDLFGRAGKLKEALEVIR-SSP 766
Query: 201 DRKNLVSWTTIISGFAMH---GMGKEAVENFERMQKVG 235
+ + V W T++ +H +G+ A+ N ++ +G
Sbjct: 767 SQHDPVLWRTLLGSCKIHRNVEIGEMAMRNLVQLGSLG 804
>gi|147817753|emb|CAN66661.1| hypothetical protein VITISV_031721 [Vitis vinifera]
Length = 569
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 100/340 (29%), Positives = 175/340 (51%), Gaps = 47/340 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF---LKDSS 79
+ FTYSFLI C G Q+H G+ ++V+V T+L ++Y G ++ +
Sbjct: 131 NEFTYSFLIGGCARSXLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKAR 190
Query: 80 KLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNE 118
++FDE+ +RN+V+WN ++ G V+ WT +I G +++ R +
Sbjct: 191 RVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQ 250
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR---GFNAFDIHVS 175
AL LF M + ++ ++A L A + G+++ IH Y ++R G + ++
Sbjct: 251 ALHLFHEMRRAG-VKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLN 309
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
N LI YA CG I A K+F + +++ +SWT++I+GFA G +EA+ F+ MQ++G
Sbjct: 310 NSLIHMYASCGVIDKAYKVF--IGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLG 367
Query: 236 L---KPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRL 281
+P+ IG ++G FF+ M ++ ++P I+HYGC++D+L RAG L
Sbjct: 368 TDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFL 427
Query: 282 EQAEEVASGIPSQITNVVVWRT--GFLRLLINSYFFSPIT 319
++A + +P + N VW G R+ N+ S +
Sbjct: 428 DEAHRLXESMPMK-PNDAVWGALLGGCRIHKNAELASHVA 466
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 100/229 (43%), Gaps = 46/229 (20%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
Q+H GF ++ L Y++ G L ++ K+F+ + + WN +I
Sbjct: 52 QIHTQIIVNGFSQKNFLLVKLLSFYITSGNLLNAHKVFERIENPSTTVWNQMIR------ 105
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY--- 161
G+S+ ++ + L+ RM E EP+E T ++ ++ +R + +HG
Sbjct: 106 ----GHSQSETPHKLVELYNRMVEAE-AEPNEFTYSFLIGGCARSXLLREGEQVHGRVVA 160
Query: 162 ------------------------GEKRGFNAFDIHVS------NCLIDTYAKCGCIFSA 191
G ++ FD V N L+ Y +CG + A
Sbjct: 161 NGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEIVDRNIVSWNSLLAGYVRCGDVDGA 220
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
++F++ + +N+VSWTT+I+G A G K+A+ F M++ G+K ++
Sbjct: 221 RRIFDE--MPERNVVSWTTMIAGCAQIGRCKQALHLFHEMRRAGVKLDQ 267
>gi|413925246|gb|AFW65178.1| hypothetical protein ZEAMMB73_703358 [Zea mays]
Length = 572
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 137/253 (54%), Gaps = 36/253 (14%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYS 111
G L + K+FDE+P RNLV+WN ++ G +V WT ++ GY+
Sbjct: 238 GLLPLARKMFDEMPARNLVSWNAMVRGYAVNGDVDGARELFDAMPEKDVVSWTCMVSGYA 297
Query: 112 RMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD 171
R R +AL LFR M + + P+E+T+++V A + ++ + H + KRG D
Sbjct: 298 RAGRHAQALELFRTMQSGD-VRPNEVTMVSVFSACARLAALKEGRWAHAFIGKRGMVLDD 356
Query: 172 -IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
++ LID YAKCG A+K+F S+DRKN+ +W +I+G A +G + ++ FE+
Sbjct: 357 GFNLGAALIDMYAKCGRPDVAAKVFR--SLDRKNVSAWNALIAGLAANGDARRCIDVFEQ 414
Query: 231 MQKVGLKPNR---------SWRIG--EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
M+ KP+ R G +EG + F M V P++KHYGC++D+L RAG
Sbjct: 415 MKVSDEKPDSVTFVSVLAACARAGLVDEGRRCFRSMSSGFGVQPELKHYGCMVDLLGRAG 474
Query: 280 RLEQAEEVASGIP 292
+++AEE+ G+P
Sbjct: 475 LVDEAEELVRGMP 487
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/298 (21%), Positives = 119/298 (39%), Gaps = 75/298 (25%)
Query: 21 LFDSFTYSFLIRTCVTL-SYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
L D FT+ L ++ S+P G Q+HA ++ G + + +L MY +L +D++
Sbjct: 89 LPDHFTFPPLAKSASKFPSFPRTGAQVHAQAARRGLLADAFAVNSLLAMYAAL---RDAA 145
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
+ R ++ +V W ++ GY+R C
Sbjct: 146 SM------RGVLESCAEAADVVSWNTVVAGYAR----------------C---------- 173
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
GE+ N + +R ++ + ++ YA G + A +F+
Sbjct: 174 ----------GELGNARRAFDGMPRRNGASW-----SAMVGAYAAAGQLDVARDMFDRAP 218
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGL---------- 249
+++V+W ++++G A HG+ A + F+ M L SW G
Sbjct: 219 AAGRSVVTWNSMVAGLARHGLLPLARKMFDEMPARNLV---SWNAMVRGYAVNGDVDGAR 275
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE----VASG--IPSQITNVVVW 301
+ FD M E+ D+ + C++ RAGR QA E + SG P+++T V V+
Sbjct: 276 ELFDAMPEK-----DVVSWTCMVSGYARAGRHAQALELFRTMQSGDVRPNEVTMVSVF 328
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 68/172 (39%), Gaps = 29/172 (16%)
Query: 33 TCVTLSYPNLGTQLHAVFSKVG--FQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
C L+ G HA K G + AL DMY G ++K+F L +N+
Sbjct: 330 ACARLAALKEGRWAHAFIGKRGMVLDDGFNLGAALIDMYAKCGRPDVAAKVFRSLDRKNV 389
Query: 91 VTWNVIITGLV---KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIW 147
WN +I GL ID + +M S+E +P +T ++VL A
Sbjct: 390 SAWNALIAGLAANGDARRCIDVFEQMKVSDE--------------KPDSVTFVSVLAACA 435
Query: 148 KNG---EVRNC--QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
+ G E R C + G+G + + C++D + G + A +L
Sbjct: 436 RAGLVDEGRRCFRSMSSGFGVQPELKHY-----GCMVDLLGRAGLVDEAEEL 482
>gi|297744641|emb|CBI37903.3| unnamed protein product [Vitis vinifera]
Length = 516
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 152/302 (50%), Gaps = 35/302 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F+++ ++ CV L L Q+H GF S+V +++++ D YV G + D+ KLF
Sbjct: 191 NGFSFAGVLTVCVKLKEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLF 250
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
DE+ R+++ W +++G K WT +I GY+R ++AL
Sbjct: 251 DEMSARDVLAWTTMVSGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALE 310
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF +M + P + T + L A +++ + IH Y + F I VS LID
Sbjct: 311 LFTKMMLF-HVRPDQFTFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVS-ALIDM 368
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR- 240
Y+KCG + K+F D ++ ++V W TIIS A HG G+EA++ + M + G KP++
Sbjct: 369 YSKCGSLGIGRKVF-DLMGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKI 427
Query: 241 ----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+ ++GL FF+ M + ++P +HY CLID+L RAG E+ +
Sbjct: 428 TFVVILNACSHSGLVQQGLNFFESMSCDYGIVPSQEHYACLIDLLGRAGCFEEVMDQLEK 487
Query: 291 IP 292
+P
Sbjct: 488 MP 489
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/318 (24%), Positives = 135/318 (42%), Gaps = 79/318 (24%)
Query: 39 YPNLGTQLHA--VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVI 96
Y G ++ A VF K+ ++ N L Y LG +K + KLFD++PE+++V+WN +
Sbjct: 105 YAKCGKEVEARKVFDKMSARNLYSWNNMLSG-YAKLGMIKPARKLFDKMPEKDVVSWNTM 163
Query: 97 ITGLVK---WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVR 153
+ + W + YS FR++ + + + VL K EV
Sbjct: 164 VIAHAQCGYWDEALRFYSE----------FRQLG----IQCNGFSFAGVLTVCVKLKEVG 209
Query: 154 NCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS-------------- 199
+ +HG GF + ++ +S+ ++D Y KCG + A KLF++ S
Sbjct: 210 LTRQVHGQILVAGFLS-NVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGY 268
Query: 200 ---------------VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI 244
+ KN VSWT +ISG+A +GMG +A+E F +M ++P++
Sbjct: 269 AKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQF--- 325
Query: 245 GEEGLKFFDKMVEECEVLPDIKH-------------------YGCLIDILERAGRLEQAE 285
F + C + +KH LID+ + G L
Sbjct: 326 ------TFSSCLCACASIASLKHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGR 379
Query: 286 EVASGIPSQITNVVVWRT 303
+V + +++ +VV+W T
Sbjct: 380 KVFDLMGNKL-DVVLWNT 396
>gi|449439631|ref|XP_004137589.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 102/321 (31%), Positives = 164/321 (51%), Gaps = 48/321 (14%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF-----LKD 77
+ FTYSFL+ CV G Q+H G+ S++YV T L ++Y + G LK
Sbjct: 124 NGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKR 183
Query: 78 SSKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRS 116
+ LFDE+P+ N+V WN ++ G V+ WT ++ G+++ +
Sbjct: 184 ALYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQC 243
Query: 117 NEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK----RGFNAFDI 172
AL+LF +M E ++ ++A L A + G++ + IHGY E+ R +
Sbjct: 244 KLALSLFDQMRRAG-VELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVL-V 301
Query: 173 HVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQ 232
++N LI YA CG + A KLFE+ + ++N VSW++II+GFA G G EA+ F+ M
Sbjct: 302 SLNNALIHMYASCGAMDLAYKLFEE--IPQRNTVSWSSIITGFAKQGCGVEAIRIFQLML 359
Query: 233 KVG---LKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERA 278
G ++P+ IG +G++ F M + V+P I+HYGC++D+L RA
Sbjct: 360 CSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMHKTFGVIPQIEHYGCMVDLLSRA 419
Query: 279 GRLEQAEEVASGIPSQITNVV 299
G L +A + +P + N V
Sbjct: 420 GLLTEALSLIESMPMKPNNAV 440
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 113/251 (45%), Gaps = 52/251 (20%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
F +S L ++CV S+ NL + HA GF Y+ L +Y+S G L + K+F++
Sbjct: 29 FIFSVL-KSCV--SFRNL-AKTHAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVFED 84
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM----------------AA 128
+ + WN II G++R S +++ LF+RM +A
Sbjct: 85 ITAPSTTVWN----------QIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSA 134
Query: 129 CE----YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS--------- 175
C + E +I ++ W N VR LI+ Y FD+ +
Sbjct: 135 CVRSRLFREGEQIHGRVLVNGYWSNLYVRT-NLINLYANGGDGGDFDLKRALYLFDEMPD 193
Query: 176 ------NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFE 229
N L+ Y + G A K+F++ + +N+ +WT +++GFA +G K A+ F+
Sbjct: 194 SNVVGWNSLLAGYVRRGDFDGARKVFDE--MPERNVRTWTIMVAGFAQNGQCKLALSLFD 251
Query: 230 RMQKVGLKPNR 240
+M++ G++ ++
Sbjct: 252 QMRRAGVELDQ 262
>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
Length = 886
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 101/321 (31%), Positives = 163/321 (50%), Gaps = 45/321 (14%)
Query: 8 QQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQS---------- 57
QQ+ ++ P +S T L+ C +L + G + HA K S
Sbjct: 384 QQMILYGSEP-----NSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGD 438
Query: 58 --HVYVNTALGDMYVSLGFLKDSSKLFDELP--ERNLVTWNVIITGLVKWTGIIDGYSRM 113
+ V+ AL DMY K + +F+ +P ERN+VTW V+I GY++
Sbjct: 439 GEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMI----------GGYAQY 488
Query: 114 NRSNEALALFRRMAACEYT-EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDI 172
SN+AL LF M + Y P+ TI +L A +R + IH Y + +
Sbjct: 489 GDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSV 548
Query: 173 H-VSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
+ V+NCLID Y+KCG + +A +F+ S+ ++N VSWT+++SG+ MHG GKEA++ F++M
Sbjct: 549 YFVANCLIDMYSKCGDVDTARNVFD--SMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKM 606
Query: 232 QKVGLKPN-----------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGR 280
QK G P+ + ++GL +FD M + V+ +HY C+ID+L R+GR
Sbjct: 607 QKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGR 666
Query: 281 LEQAEEVASGIPSQITNVVVW 301
L++A + +P + + +W
Sbjct: 667 LDKAWKTIQEMPME-PSAAIW 686
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 84/342 (24%), Positives = 143/342 (41%), Gaps = 74/342 (21%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT + ++ C L G+ H + GF+S+V+V AL MY G L+D+S +F
Sbjct: 148 DHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVF 207
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE-----I 137
DE+ + I ++ W I+ + + + AL LF M + + + I
Sbjct: 208 DEITRKG-------IDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDII 260
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF-- 195
+I+ +LPA + + IH Y + G A D V N LIDTYAKCG + A +F
Sbjct: 261 SIVNILPACASLKALPQTKEIHSYAIRNGTFA-DAFVCNALIDTYAKCGSMKDAVNVFNV 319
Query: 196 ----------------------------------EDTSVDRKNLVSWTTIISGFAMHGMG 221
E+ +D +++W+ +I+G+A G G
Sbjct: 320 MEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLD---VITWSAVIAGYAQRGYG 376
Query: 222 KEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEEC----------- 259
+EA++ F++M G +PN I +G++ +++C
Sbjct: 377 QEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGD 436
Query: 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
D+ + LID+ + + A + + IP + NVV W
Sbjct: 437 GDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTW 478
>gi|297746423|emb|CBI16479.3| unnamed protein product [Vitis vinifera]
Length = 430
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 153/289 (52%), Gaps = 25/289 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FTY F+++ C G +H++ K GF S YV L MY +L + + ++F
Sbjct: 9 DNFTYPFVVKACGRSLVVGAGGAMHSIIVKAGFDSDRYVGNTLLRMYANLNAVGLARRVF 68
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+ R++V+ W+ +I GY N +AL +FR M +P+ +T++++
Sbjct: 69 NEMTVRDVVS----------WSSMIAGYVACNCQADALMVFRHMMLAN-EKPNSVTLVSL 117
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + + + IH Y D+ + +++ Y+KCG I A K+F S+
Sbjct: 118 LSACTRLLNIGVGESIHSYIIVNCI-GLDVALGTAILEMYSKCGHIEKALKVF--NSLTE 174
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKF 251
KNL SWT +ISG A H G++A+ F +M++ GL+P+ + +EG F
Sbjct: 175 KNLQSWTIMISGLADHSHGEDAISLFTQMEQTGLQPDSMSFSEILSACSHLGLVDEGQTF 234
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
F +MV+ + P ++HYGC++D+ RAG +E+A E+ +P + +V++
Sbjct: 235 FSQMVKIYNIRPTMEHYGCMVDMFARAGMIEEAYEIIKNMPMEPNSVIL 283
>gi|125541284|gb|EAY87679.1| hypothetical protein OsI_09093 [Oryza sativa Indica Group]
Length = 493
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 98/320 (30%), Positives = 167/320 (52%), Gaps = 41/320 (12%)
Query: 17 PLPPLFDSFTYSFLIRTCV-TLSYP---NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL 72
P P+ + T ++ C + S P L +HA K+ F SH+ ++T L Y +
Sbjct: 60 PAAPVPNDVTLLTVLSACADSPSSPLARRLALSVHARVLKL-FPSHLLLSTCLVRFYFAS 118
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGL---------------------VKWTGIIDGYS 111
+ +LFD +P R+ VT+N +I+GL V WT +IDG
Sbjct: 119 RLPHLALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCV 178
Query: 112 RMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD 171
+ R +EA+ FR M + EP +T++AV+ A + G + +H ++G +
Sbjct: 179 KNGRHDEAINCFRAML-LDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLER-N 236
Query: 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
+ ++N LID YA+CG + A ++F + + ++ +VSW ++I GFA +G +AVE+FE M
Sbjct: 237 VRIANSLIDMYARCGQVELARQVF--SGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAM 294
Query: 232 QKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGR 280
++ G KP+ G +EGL+++D M E + ++HYGC++D+L R+GR
Sbjct: 295 RREGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGR 354
Query: 281 LEQAEEVASGIPSQITNVVV 300
LE+A V + +P + VV+
Sbjct: 355 LEEAMRVVTTMPMRPNEVVL 374
>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
chloroplastic [Vitis vinifera]
gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
Length = 802
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 148/282 (52%), Gaps = 27/282 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T L+ C L LG +H + GF H+ + TAL DMY G LK + LF
Sbjct: 328 DWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLF 387
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT-EPSEITILA 141
++ ERNL++WN +I Y++ + +A+ LF+ + C T +P TI +
Sbjct: 388 GQMNERNLISWNAMIA----------SYTKNGENRKAMTLFQDL--CNKTLKPDATTIAS 435
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+LPA + +R + IHGY K ++ + VSN ++ Y KCG + A ++F+ +
Sbjct: 436 ILPAYAELASLREAEQIHGYVTKLKLDS-NTFVSNSIVFMYGKCGNLLRAREIFDRMTF- 493
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
K+++SW T+I +A+HG G+ ++E F M++ G +PN S + EG +
Sbjct: 494 -KDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWE 552
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+F+ M + + P I+HYGC++D++ R G L+ A+ +P
Sbjct: 553 YFNSMKRDYNINPGIEHYGCILDLIGRTGNLDHAKNFIEEMP 594
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 114/222 (51%), Gaps = 23/222 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FTY F+I+ C L G ++H K G +Y+ +L MY +G ++ + +F
Sbjct: 125 DNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVF 184
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC--EYTEPSEITIL 140
E+P R+LV+WN +I+G V + DG+ +L+ FR M A + S I IL
Sbjct: 185 REMPVRDLVSWNSMISGYVS---VGDGW-------RSLSCFREMQASGIKLDRFSVIGIL 234
Query: 141 AV--LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
L +NG+ +CQ++ E D+ V L+D YAKCG + A +LF+
Sbjct: 235 GACSLEGFLRNGKEIHCQMMRSRLE------LDVMVQTSLVDMYAKCGRMDYAERLFD-- 286
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-LKPN 239
+ K++V+W +I G++++ E+ +MQ+ G L P+
Sbjct: 287 QITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPD 328
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 106/218 (48%), Gaps = 13/218 (5%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D F+ ++ C + G ++H + + V V T+L DMY G + + +L
Sbjct: 225 LDRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERL 284
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD++ ++++V WN +I GYS +S E+ A R+M P IT++
Sbjct: 285 FDQITDKSIVAWN----------AMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMIN 334
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+LP + + + +HG+ + GF + + L+D Y +CG + A LF ++
Sbjct: 335 LLPPCAQLEAILLGKSVHGFAIRNGFLPHLV-LETALVDMYGECGKLKPAECLF--GQMN 391
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+NL+SW +I+ + +G ++A+ F+ + LKP+
Sbjct: 392 ERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPD 429
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 120/247 (48%), Gaps = 34/247 (13%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK----WTGIIDGYSRMNRSNEALALFR 124
YV G++K++ LF+ + + + WNV+I G V W + D Y RM F
Sbjct: 70 YVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAV-DFYHRME--------FG 120
Query: 125 RMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK 184
+ +T P V+ A ++ + +HG K G + DI++ N LI YAK
Sbjct: 121 GVRGDNFTYP------FVIKACGGLYDLAEGERVHGKVIKSGLD-LDIYIGNSLIIMYAK 173
Query: 185 CGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI 244
GCI SA +F + V ++LVSW ++ISG+ G G ++ F MQ G+K +R I
Sbjct: 174 IGCIESAEMVFREMPV--RDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVI 231
Query: 245 GEEG---LKFFDKMVEE--CEVLP-----DIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
G G L+ F + +E C+++ D+ L+D+ + GR++ AE + I +
Sbjct: 232 GILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDK 291
Query: 295 ITNVVVW 301
++V W
Sbjct: 292 --SIVAW 296
>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g06540-like [Vitis vinifera]
Length = 623
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 159/313 (50%), Gaps = 37/313 (11%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D+ T+ FL+++C L ++G+Q H K GF+ VYV +L MY + G + ++
Sbjct: 116 LPDNLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATL 175
Query: 81 LFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEA 119
+F + ++V+W +I G LV W+ +I GY++ N ++A
Sbjct: 176 IFQRMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKA 235
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
+ LF+ + + + +E +++V+ + G + + H Y K G ++ + L+
Sbjct: 236 VELFKVLQS-QGVRANETVMVSVISSCAHLGALELGERAHDYVVKNGMT-LNLILGTALV 293
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D YA+CG I A +FED + ++ +SWT +I+G AMHG + +++ F M + GL P
Sbjct: 294 DMYARCGSIDKAVWVFED--LPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPR 351
Query: 240 -----------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
+ E G + F+ M + V P ++HYGC++D+L RAG+LE+AE
Sbjct: 352 DITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFV 411
Query: 289 SGIPSQITNVVVW 301
+P + N VW
Sbjct: 412 LKMPVK-PNAPVW 423
>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
Length = 633
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 88/271 (32%), Positives = 144/271 (53%), Gaps = 29/271 (10%)
Query: 58 HVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSN 117
HV TA+ Y +G L D+ LFD LP ++LV WN ++ DGY++ R +
Sbjct: 187 HVVSVTAMLSCYAKMGQLDDARGLFDALPRKDLVCWNAMM----------DGYTQHGRPS 236
Query: 118 EALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY---GEKRGFNAFDIHV 174
EAL LFR+M EP E++++ L A+ + G + + +H + G +R + V
Sbjct: 237 EALRLFRQMLR-SGVEPDEVSVVLALSAVAQLGTAESGRWLHSFVANGGRRARVRLNARV 295
Query: 175 SNCLIDTYAKCGCIFSASKLFED-TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
L+D Y KCG + A +F D +++V+W +I+G+AMHG +EA+E F +++
Sbjct: 296 GTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQLRA 355
Query: 234 VGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLE 282
GL P IG +EG F M EE ++P ++HYGC++D+L RAGR+E
Sbjct: 356 QGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCMVDLLGRAGRVE 415
Query: 283 QAEEVASGIPSQITNVVVWRT--GFLRLLIN 311
+A ++ + ++ + +W + G RL N
Sbjct: 416 EAFDLVQSMKAK-PDAAMWASLLGACRLHKN 445
>gi|297819366|ref|XP_002877566.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323404|gb|EFH53825.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 591
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 154/301 (51%), Gaps = 32/301 (10%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76
P PL SF I++ L G Q+H GF S + T L D+Y +
Sbjct: 110 PANPLSSSFALKCCIKSGDLLG----GLQIHGKIFSDGFLSDSLLMTTLMDLYSTCENST 165
Query: 77 DSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA--ACEYTEP 134
D+ K+FDE+P+R+ V+WNV+I+ Y R R+ + L LF +M +P
Sbjct: 166 DACKVFDEIPQRDTVSWNVLISC----------YLRNKRTRDVLVLFDKMKNDVDRCVKP 215
Query: 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
+T L L A G + + +H + ++ G + +++SN L+ Y++CG + A ++
Sbjct: 216 DNVTCLLALQACANLGALDFGKQVHDFIDENGLSGA-LNLSNTLVSMYSRCGSMDKAYEV 274
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG--------- 245
F + +N+VSWT +ISG AM+G GKEA+E F M K G+ P G
Sbjct: 275 F--NRMRERNVVSWTAMISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSG 332
Query: 246 --EEGLKFFDKMVE-ECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
+EG+ FFD+M E ++ P++ HYGC++D+L RA L++A + + + + +WR
Sbjct: 333 LVDEGMMFFDRMRSGEFKIKPNLHHYGCIVDLLGRARLLDKAYSLIKSMEMK-PDSTIWR 391
Query: 303 T 303
T
Sbjct: 392 T 392
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 85/198 (42%), Gaps = 13/198 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ T ++ C L + G Q+H + G + ++ L MY G + + ++F
Sbjct: 216 DNVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYEVF 275
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + ERN+V+W +I+GL ++G+ + EA+ F M + P E T+ +
Sbjct: 276 NRMRERNVVSWTAMISGLA-----MNGFGK-----EAIEAFNEMLKFGIS-PEEQTLTGL 324
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFN-AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A +G V + F ++H C++D + + A L + +
Sbjct: 325 LSACSHSGLVDEGMMFFDRMRSGEFKIKPNLHHYGCIVDLLGRARLLDKAYSLIKSMEMK 384
Query: 202 RKNLVSWTTIISGFAMHG 219
+ + W T++ +HG
Sbjct: 385 PDSTI-WRTLLGACRVHG 401
>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic-like [Cucumis sativus]
Length = 574
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 146/273 (53%), Gaps = 26/273 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ F+++ C LS G ++H + G +S V+V AL DMY G ++ + ++F
Sbjct: 101 DKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVF 160
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++ ER++V WN ++ YS+ + +E+LAL R MA +P+E T +
Sbjct: 161 DKIDERDVVCWNSMLA----------TYSQNGQPDESLALCRVMAF-NGLKPTEGTFVIS 209
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A NG + + +HGY + GF + D V L+D YAK G + A LFE ++
Sbjct: 210 IAASADNGLLPQGKELHGYSWRHGFESND-KVKTALMDMYAKSGSVNVARSLFE--LLEE 266
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
K +VSW +I+G+AMHG EA++ F+ M+ L P+ +G EG
Sbjct: 267 KRVVSWNAMITGYAMHGHANEALDLFKEMKGKVL-PDHITFVGVLAACSHGGLLNEGKMH 325
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
F M+ + + P ++HY C+ID+L GRLE+A
Sbjct: 326 FRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEA 358
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/212 (29%), Positives = 105/212 (49%), Gaps = 14/212 (6%)
Query: 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP 86
Y+ L+++CV G QLHA +VG + + T L ++Y L ++ LFD +
Sbjct: 4 YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63
Query: 87 ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI 146
+RNL WNV+I G W G + A++L+ +M P + T VL A
Sbjct: 64 KRNLFLWNVMIRGYA-WNGPYE---------LAISLYYQMRDYGLV-PDKFTFPFVLKAC 112
Query: 147 WKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLV 206
+ + IH + G + D+ V LID YAKCGC+ SA ++F+ +D +++V
Sbjct: 113 SALSAMEEGKKIHKDVIRSGLES-DVFVGAALIDMYAKCGCVESARQVFD--KIDERDVV 169
Query: 207 SWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
W ++++ ++ +G E++ M GLKP
Sbjct: 170 CWNSMLATYSQNGQPDESLALCRVMAFNGLKP 201
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 91/194 (46%), Gaps = 18/194 (9%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G +LH + GF+S+ V TAL DMY G + + LF+ L E+ +V+WN +ITG
Sbjct: 222 GKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITG--- 278
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
Y+ +NEAL LF+ M P IT + VL A +G + N +H
Sbjct: 279 -------YAMHGHANEALDLFKEMKG--KVLPDHITFVGVLAAC-SHGGLLNEGKMHFRS 328
Query: 163 EKRGFNAF-DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG-- 219
FN + + C+ID CG + A KL + V+ V W ++ +HG
Sbjct: 329 MISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGV-WGALLHSCKIHGNV 387
Query: 220 -MGKEAVENFERMQ 232
MG+ A+E ++
Sbjct: 388 EMGELALEKLVELE 401
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 16/146 (10%)
Query: 169 AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENF 228
+F+ ++ L++ Y C + +A LF+ S ++NL W +I G+A +G + A+ +
Sbjct: 33 SFNPLLATKLVNLYCICNSLTNAHLLFDRIS--KRNLFLWNVMIRGYAWNGPYELAISLY 90
Query: 229 ERMQKVGLKPNR-----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILER 277
+M+ GL P++ + EEG K ++ + D+ LID+ +
Sbjct: 91 YQMRDYGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRS-GLESDVFVGAALIDMYAK 149
Query: 278 AGRLEQAEEVASGIPSQITNVVVWRT 303
G +E A +V I + +VV W +
Sbjct: 150 CGCVESARQVFDKIDER--DVVCWNS 173
>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 609
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 145/291 (49%), Gaps = 27/291 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D + ++ C L LG + + G + + Y+ +AL MY G L S ++F
Sbjct: 218 DEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIGSALISMYSKCGELVSSRRIF 277
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +P R+ +TWN I+ Y++ ++EA++LF M +P+++T+ AV
Sbjct: 278 DGMPSRDFITWNAAISA----------YAQNGMADEAISLFHSMKE-NGVDPNKVTLTAV 326
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + + + Y RG DI V+ LID YAKCG + SA ++F D + R
Sbjct: 327 LSACASIGALDLGKQMDEYATHRGLQ-HDIFVATALIDMYAKCGSLESAQRVFND--MPR 383
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVG--LKPNRSWRIG-----------EEGL 249
KN SW +IS A HG KEA+ FERM G +PN + +EG
Sbjct: 384 KNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAGLVDEGY 443
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
+ FD M ++P I+HY C++D+L RAG L +A +V +P + NV +
Sbjct: 444 RLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTL 494
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 150/302 (49%), Gaps = 31/302 (10%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
+Y Q++ + I SP ++FT+ F+ C L + H K+G + +
Sbjct: 104 LYHQMKTLNI---SP-----NNFTFPFVFLACANLEEIRMARLAHCEVFKLGLDNDHHTV 155
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
++ MY G + K+FDE+ E++LV+WN +++ GY+++ + EA+ +
Sbjct: 156 NSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLS----------GYAKLGFAREAVEV 205
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
F R+ EP E+++++VL A + G++ + + G+ +RG + ++ + LI Y
Sbjct: 206 FGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKV-NSYIGSALISMY 264
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-- 240
+KCG + S+ ++F+ + ++ ++W IS +A +GM EA+ F M++ G+ PN+
Sbjct: 265 SKCGELVSSRRIFD--GMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVDPNKVT 322
Query: 241 -------SWRIGEEGL-KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
IG L K D+ + DI LID+ + G LE A+ V + +P
Sbjct: 323 LTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRVFNDMP 382
Query: 293 SQ 294
+
Sbjct: 383 RK 384
>gi|224099171|ref|XP_002311390.1| predicted protein [Populus trichocarpa]
gi|222851210|gb|EEE88757.1| predicted protein [Populus trichocarpa]
Length = 594
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 156/294 (53%), Gaps = 38/294 (12%)
Query: 42 LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG-- 99
+G + VF K+ V N L + YV G L ++ +LFDE+PER++V+W +++ G
Sbjct: 186 VGIVVRRVFDKIEGPDVVSWN-CLINGYVKSGDLDEARRLFDEMPERDVVSWTIMLVGYA 244
Query: 100 -------------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
LV W+ +I GY ++ ++AL LF+ M + + E+ +
Sbjct: 245 DAGFLSEASCLFDEMPKRNLVSWSALIKGYIQIGCYSKALELFKEMQVAK-VKMDEVIVT 303
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+L A + G + + +H Y +K G D H+S LID Y+KCG I A K+F++T
Sbjct: 304 TLLSACARLGALDQGRWLHMYIDKHGIKV-DAHLSTALIDMYSKCGRIDMAWKVFQETG- 361
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
D+K V W+++I G AMH G++A+E F +M + G++P+ I + GL
Sbjct: 362 DKKVFV-WSSMIGGLAMHSFGEKAIELFAKMIECGIEPSEITYINILAACTHSGLVDVGL 420
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ F++MVE + P ++HYGC++D+L RAG L A V +P + + +WR
Sbjct: 421 QIFNRMVENQKPKPRMQHYGCIVDLLGRAGLLHDAFRVVETMPVK-ADPAIWRA 473
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 93/215 (43%), Gaps = 21/215 (9%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D + L+ C L + G LH K G + +++TAL DMY G + + K+
Sbjct: 297 MDEVIVTTLLSACARLGALDQGRWLHMYIDKHGIKVDAHLSTALIDMYSKCGRIDMAWKV 356
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F E ++ + W+ +I GL + + +A+ LF +M C EPSEIT +
Sbjct: 357 FQETGDKKVFVWSSMIGGL----------AMHSFGEKAIELFAKMIECG-IEPSEITYIN 405
Query: 142 VLPAIWKNGEVR-NCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+L A +G V Q+ + E + H C++D + G + A ++ E V
Sbjct: 406 ILAACTHSGLVDVGLQIFNRMVENQKPKPRMQHYG-CIVDLLGRAGLLHDAFRVVETMPV 464
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
+ + W ++S +H N E ++VG
Sbjct: 465 -KADPAIWRALLSACKLH-------RNVELGEQVG 491
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 93/228 (40%), Gaps = 39/228 (17%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS------LGFLKDSSKLFD 83
L++ C P QLH + K Y A G + +S LG L + KLFD
Sbjct: 37 LLQNCKN---PKDLIQLHTLLIKTSLIKEKY---AFGRLLLSFASFDNLGSLNYAQKLFD 90
Query: 84 --ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE-YTEPSEITIL 140
++P + + +T +I Y+ EA A + RM + Y P++ T
Sbjct: 91 TVDIPRNSFM-----------YTTMIKAYANFGNPREAFAFYSRMLCDQRYVYPNDFTFT 139
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI-FSASKLFEDTS 199
V A K V + H K F F +H N L+D Y K G + ++F+
Sbjct: 140 YVFSACSKFNGVFEGKQAHAQMIKFPFE-FGVHSWNSLLDFYGKVGEVGIVVRRVFD--K 196
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---SWRI 244
++ ++VSW +I+G+ G EA F+ M P R SW I
Sbjct: 197 IEGPDVVSWNCLINGYVKSGDLDEARRLFDEM------PERDVVSWTI 238
>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1174
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 153/282 (54%), Gaps = 26/282 (9%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
+R C +L+ ++GTQLHA+ +K G + + + +L MY G + +++ FDE+ ++
Sbjct: 314 LRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDT 373
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
+++ +++G V+ ++ EA +F++M AC EP T+++++PA
Sbjct: 374 ISYGALLSGCVQ----------NGKAEEAFLVFKKMQACN-MEPDIATMVSLIPACSHLA 422
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
+++ + HG RG A + + N LID YAKCG I + ++F+ +++VSW T
Sbjct: 423 ALQHGKCSHGSVIIRGL-ALETSICNSLIDMYAKCGKIDLSRQVFDKMPA--RDVVSWNT 479
Query: 211 IISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEEC 259
+I+G+ +HG+GKEA F M+ G P+ I EG +FD M +
Sbjct: 480 MIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKY 539
Query: 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+LP ++HY C++D+L R G L++A + +P + +V VW
Sbjct: 540 GILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLK-ADVRVW 580
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 102/216 (47%), Gaps = 14/216 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ +T+ F+++ C L G +HA + G + ++V+TAL D+Y+ + +F
Sbjct: 99 NKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVF 158
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++P R++V WN ++ GY+ + A+A M P+ T++++
Sbjct: 159 AKMPMRDVVAWNAMLA----------GYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSL 208
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGF--NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
LP + ++G + IH Y + N + + L+D YAKC + A ++F V
Sbjct: 209 LPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPV 268
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
+N V+W+ +I GF + EA F+ M GL
Sbjct: 269 --RNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGL 302
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 66/295 (22%), Positives = 113/295 (38%), Gaps = 62/295 (21%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
FLV+K++Q + D T LI C L+ G H G
Sbjct: 393 FLVFKKMQACNMEP--------DIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETS 444
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
+ +L DMY G + S ++FD++P R++V+WN +I GY EA
Sbjct: 445 ICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIA----------GYGIHGLGKEAT 494
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQ-----LIHGYGEKRGFNAFDIHVS 175
LF M + P ++T + ++ A +G V + + H YG +
Sbjct: 495 TLFLGMKNQGFA-PDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYI---- 549
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH---GMGKEAVENFERMQ 232
C++D A+ G + A + + + + ++ W ++ +H +GK+ +++
Sbjct: 550 -CMVDLLARGGLLDEAYQFIQSMPL-KADVRVWGALLGACRIHKNIDLGKQVSRIIQKL- 606
Query: 233 KVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
G EG F VL L +I AGR ++A EV
Sbjct: 607 ------------GPEGTGNF--------VL--------LSNIFSAAGRFDEAAEV 633
>gi|297733949|emb|CBI15196.3| unnamed protein product [Vitis vinifera]
Length = 467
Score = 150 bits (380), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 100/340 (29%), Positives = 175/340 (51%), Gaps = 47/340 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF---LKDSS 79
+ FTYSFLI C G Q+H G+ ++V+V T+L ++Y G ++ +
Sbjct: 29 NEFTYSFLIGGCARSRLLREGEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKAR 88
Query: 80 KLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNE 118
++FDE+ +RN+V+WN ++ G V+ WT +I G +++ R +
Sbjct: 89 RVFDEIVDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCAQIGRCKQ 148
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR---GFNAFDIHVS 175
AL LF M + ++ ++A L A + G+++ IH Y ++R G + ++
Sbjct: 149 ALHLFHEMRRAG-VKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLN 207
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
N LI YA CG I A K+F + +++ +SWT++I+GFA G +EA+ F+ MQ++G
Sbjct: 208 NSLIHMYASCGVIDKAYKVF--IGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLG 265
Query: 236 L---KPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRL 281
+P+ IG ++G FF+ M ++ ++P I+HYGC++D+L RAG L
Sbjct: 266 TDEGRPDGITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFL 325
Query: 282 EQAEEVASGIPSQITNVVVWRT--GFLRLLINSYFFSPIT 319
++A + +P + N VW G R+ N+ S +
Sbjct: 326 DEAHRLIESMPMK-PNDAVWGALLGGCRIHKNAELASHVA 364
>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 654
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 93/304 (30%), Positives = 169/304 (55%), Gaps = 39/304 (12%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVT--LSYPNL--GTQLHAVFSKVGFQ 56
++Y Q+ I I S + FTY+++++ CV LS L G ++HA + G++
Sbjct: 160 LVLYGQMNWIGIPS--------NRFTYTYVLKACVVSELSICPLRKGKEIHAHILRHGYE 211
Query: 57 SHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRS 116
HV+V T L D+Y G++ +S +F +P++N+V+ W+ +I Y++
Sbjct: 212 GHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVS----------WSAMIACYAKNEMP 261
Query: 117 NEALALFRRM--AACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHV 174
+AL LF+ M AC+ T P+ IT+++VL A + + +L+H Y +RG ++ + V
Sbjct: 262 MKALELFQIMMLEACD-TVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDS-TLPV 319
Query: 175 SNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
N LI Y +CG I + ++F+ + +++++SW ++IS + MHG+GK+A++ FE M
Sbjct: 320 LNTLITMYGRCGEISTGQRVFD--YMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINR 377
Query: 235 GLKPN-----------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQ 283
G+ P+ + EE F+ M+ + + P ++HY C++DIL RA RL++
Sbjct: 378 GVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRLDE 437
Query: 284 AEEV 287
A E+
Sbjct: 438 AIEL 441
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 102/213 (47%), Gaps = 24/213 (11%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T+ LI +C+ + + G +H G Y+ T L +MY LG + + K+FDE
Sbjct: 76 TFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDET 135
Query: 86 PERNLVTWNVIITGLV---KWTGIIDGYSRMN----RSNEALALFRRMAACEYTEPSEIT 138
E+ + WN I L + ++ Y +MN SN + + AC +E
Sbjct: 136 REKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFTYTY-VLKACVVSE----- 189
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
L++ P +R + IH + + G+ +HV L+D YA+ G + AS +F
Sbjct: 190 -LSICP-------LRKGKEIHAHILRHGYEGH-VHVMTTLLDVYARFGYVSYASSVF--G 238
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
++ KN+VSW+ +I+ +A + M +A+E F+ M
Sbjct: 239 AMPDKNIVSWSAMIACYAKNEMPMKALELFQIM 271
>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
Length = 663
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 105/335 (31%), Positives = 157/335 (46%), Gaps = 71/335 (21%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
VY QL+++ D+F +++ C +S+ LG ++H K G V+V
Sbjct: 146 VYAQLRKMDFE--------VDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVG 197
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGL---------------------- 100
AL MY ++ + +FD++ ER++V+W T L
Sbjct: 198 NALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHLGLARQLFNGLTQ 257
Query: 101 ---VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQL 157
V WT +I G R NR E LF RM E P+EIT+L N E
Sbjct: 258 KTVVSWTAMIAGCIRSNRLEEGTKLFIRMQE-ENIFPNEITML--------NKERVEVDC 308
Query: 158 IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAM 217
I ++ L+D YAKCG I +A +LF +++ W II+GFAM
Sbjct: 309 I---------------LNTALVDMYAKCGDINAAGRLF--IEAISRDICMWNAIITGFAM 351
Query: 218 HGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIK 266
HG G+EA++ F M++ G+KPN IG EG K F+KMV ++P I+
Sbjct: 352 HGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIE 411
Query: 267 HYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
HYGC++D+L RAG L++A E+ +P + N +VW
Sbjct: 412 HYGCMVDLLGRAGLLDEAHEMIKSMPIK-PNTIVW 445
>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 157/294 (53%), Gaps = 27/294 (9%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQ-SHVYVNTALGDMYVSLGFLKDSSK 80
D +TY + L +LG ++HA K G + ++V ++ A+ + Y G L+D K
Sbjct: 373 LDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRK 432
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F+ + +R+L++W T ++ YS+ + ++A+ +F M A E P++ T
Sbjct: 433 VFNRMEDRDLISW----------TSLVTAYSQCSEWDKAIEIFSNMRA-EGIAPNQFTFS 481
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+VL + + Q +HG K G + D + + L+D YAKCGC+ A K+F +
Sbjct: 482 SVLVSCANLCLLEYGQQVHGIICKVGLD-MDKCIESALVDMYAKCGCLGDAKKVF--NRI 538
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGL 249
+ VSWT II+G A HG+ +A++ F RM ++G++PN + EEGL
Sbjct: 539 SNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGL 598
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++F M + ++P+++HY C++D+L R G L A E S +P + N +VW+T
Sbjct: 599 QYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVE-PNEMVWQT 651
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 103/209 (49%), Gaps = 12/209 (5%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D F YS +++ C+ L LG +HA GF SH +V+TAL +MY L ++DS K+F
Sbjct: 170 DQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVF 229
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + E N+V+WN +ITG +D + LF RM E P T + V
Sbjct: 230 NTMTEVNVVSWNAMITGFTSNDLYLDAFD----------LFLRMMG-EGVTPDAQTFIGV 278
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
AI +V + + GY + G ++ + V LID +KCG + A +F +
Sbjct: 279 AKAIGMLRDVNKAKEVSGYALELGVDS-NTLVGTALIDMNSKCGSLQEARSIFNSHFITC 337
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERM 231
+ W +ISG+ G ++A+E F +M
Sbjct: 338 RFNAPWNAMISGYLRSGFNEKALELFAKM 366
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 12/197 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT+S ++ +C L G Q+H + KVG + +AL DMY G L D+ K+F
Sbjct: 476 NQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVF 535
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + + V+W II G + GI+D +AL LFRRM EP+ +T L V
Sbjct: 536 NRISNADTVSWTAIIAGHAQ-HGIVD---------DALQLFRRMVQLG-VEPNAVTFLCV 584
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G V +K ++ C++D ++ G + A + V+
Sbjct: 585 LFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEP 644
Query: 203 KNLVSWTTIISGFAMHG 219
+V W T++ +HG
Sbjct: 645 NEMV-WQTLLGACRVHG 660
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 101/235 (42%), Gaps = 24/235 (10%)
Query: 14 SHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSH---VYVNTALGDMYV 70
SH + PL D L+R CV + +H K F +H V +N + Y
Sbjct: 64 SHLQIQPLVD------LLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNH-VAHAYS 116
Query: 71 SLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE 130
+ + +LFD++ +RN +W V+I GL + +DG+ F M + +
Sbjct: 117 KCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFE----------FFCEMQS-Q 165
Query: 131 YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190
P + +L + ++H RGF + VS L++ YAK I
Sbjct: 166 GIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTF-VSTALLNMYAKLQEIED 224
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG 245
+ K+F ++ N+VSW +I+GF + + +A + F RM G+ P+ IG
Sbjct: 225 SYKVF--NTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIG 277
>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 620
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 149/275 (54%), Gaps = 24/275 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FT F+++ C LS G +H K G++ ++V AL DMY G + D+ ++F
Sbjct: 147 DNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAALIDMYAKCGCVMDAGRVF 206
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++ R+ V WN ++ Y++ +E+++L R MAA P+E T++ V
Sbjct: 207 DKIVVRDAVLWNSMLA----------AYAQNGHPDESISLCREMAA-NGVRPTEATLVTV 255
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ + + + IHG+G + GF + D V LID YAKCG + A LFE +
Sbjct: 256 ISSSADVACLPYGREIHGFGWRHGFQSND-KVKTALIDMYAKCGSVKVALALFE--RLRE 312
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQK---------VG-LKPNRSWRIGEEGLKFF 252
K +VSW II+G+AMHG+ A++ F++M+K VG L R+ +EG +
Sbjct: 313 KRVVSWNAIITGYAMHGLAVGALDLFDKMRKEDRPDHITFVGVLAACSRGRLLDEGRALY 372
Query: 253 DKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ MV + + P ++HY C+ID+L G+L++A ++
Sbjct: 373 NLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDL 407
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 113/235 (48%), Gaps = 18/235 (7%)
Query: 8 QQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGD 67
Q + S P P + Y+ L+++C+ N G QLHA F +G + + T L
Sbjct: 33 QTASVDSFPPQPTTH--YGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVH 90
Query: 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA 127
+Y L ++ LFD++P++NL WNV+I G W G D A+ L+ +M
Sbjct: 91 LYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYA-WNGPHD---------NAIILYHKM- 139
Query: 128 ACEY-TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG 186
+Y P T+ VL A + + IH Y K G+ D+ V LID YAKCG
Sbjct: 140 -LDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWER-DLFVGAALIDMYAKCG 197
Query: 187 CIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
C+ A ++F+ V ++ V W ++++ +A +G E++ M G++P +
Sbjct: 198 CVMDAGRVFDKIVV--RDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEA 250
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 92/204 (45%), Gaps = 25/204 (12%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G ++H + GFQS+ V TAL DMY G +K + LF+ L E+ +V+WN IITG
Sbjct: 268 GREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVVSWNAIITG--- 324
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA-----IWKNGEVRNCQL 157
Y+ + AL LF +M + P IT + VL A + G +
Sbjct: 325 -------YAMHGLAVGALDLFDKMR--KEDRPDHITFVGVLAACSRGRLLDEGRALYNLM 375
Query: 158 IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAM 217
+ YG + C+ID CG + A L + SV + V W +++ +
Sbjct: 376 VRDYGITPTVQHY-----TCMIDLLGHCGQLDEAYDLIRNMSVKPDSGV-WGALLNSCKI 429
Query: 218 HGMGKEAVENFERMQKVGLKPNRS 241
HG + A E++ + L+P+ S
Sbjct: 430 HGNVELAELALEKL--IELEPDDS 451
>gi|218196348|gb|EEC78775.1| hypothetical protein OsI_19008 [Oryza sativa Indica Group]
Length = 580
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 156/301 (51%), Gaps = 35/301 (11%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P D+ + SF ++ S + QLHA+ ++G + V + T L D Y G L +
Sbjct: 100 PRPDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASAR 159
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC-----EYTEP 134
K+FDE+ R++ TWN ++ GL + T N ALALF R+A EP
Sbjct: 160 KVFDEMTVRDVATWNSLLAGLAQGT----------EPNLALALFHRLANSFQELPSREEP 209
Query: 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
+E+TI+A L A + G +++ +H + ++ G + ++ V N LID Y+KCG + A +
Sbjct: 210 NEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDR-NVRVCNSLIDMYSKCGSLSRALDV 268
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP------------NRSW 242
F + + LVS+ I +MHG G +A+ F+ M ++P N S
Sbjct: 269 FHSIKPEDRTLVSYNAAIQAHSMHGHGGDALRLFDEM-PTRIEPDGVTYLAVLCGCNHSG 327
Query: 243 RIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
+ ++GL+ F+ M V P++KHYG ++D+L RAGRL +A + +P ++V+W+
Sbjct: 328 LV-DDGLRVFNSM----RVAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFP-ADIVLWQ 381
Query: 303 T 303
T
Sbjct: 382 T 382
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 85/214 (39%), Gaps = 33/214 (15%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL-PE-R 88
+ C + G +H + G +V V +L DMY G L + +F + PE R
Sbjct: 218 LSACAQIGLLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDR 277
Query: 89 NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148
LV++N I +S +AL LF M EP +T LAVL
Sbjct: 278 TLVSYN----------AAIQAHSMHGHGGDALRLFDEMPT--RIEPDGVTYLAVLCGCNH 325
Query: 149 NGEVRNCQLIHGYGEKRGFNAFDIHVS----NCLIDTYAKCGCIFSASKLFEDTSVDR-- 202
+G V + R FN+ + + ++D + G + A DT +
Sbjct: 326 SGLVDDGL--------RVFNSMRVAPNMKHYGTIVDLLGRAGRLTEAY----DTVISMPF 373
Query: 203 -KNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
++V W T++ MHG+ + A ++ ++G
Sbjct: 374 PADIVLWQTLLGAAKMHGVVELAELAANKLAELG 407
>gi|357150678|ref|XP_003575540.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g02750-like [Brachypodium distachyon]
Length = 491
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 150/294 (51%), Gaps = 40/294 (13%)
Query: 45 QLHAVFSKVGFQ---SHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV 101
Q+H + K G S VY +T+L +Y G L D+ K+FD +PE +V+WNV++ G V
Sbjct: 86 QIHTLLVKSGLPRSVSGVYASTSLARVYARHGRLADARKVFDGMPETTVVSWNVLLDGFV 145
Query: 102 K---------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+ W ++ G++R+ R+ EA+ LF M P E T++
Sbjct: 146 RAGDLDAAWELFVEMTERNVVSWNTVMVGFARLGRAQEAVELFVEMTTVYGLVPDEATMV 205
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+ A+ G + + HGY +R F+ D + LI+ Y +CG + +A F +SV
Sbjct: 206 GFVSAVRNIGLLGLGRSAHGYVIRREFS-LDGALGVGLINMYTRCGSMTAAYLCF--SSV 262
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
KN+ WT+ I GFA HG A+ F M+++G++PN + +EG
Sbjct: 263 TSKNVEHWTSAIGGFAAHGHPDMALRLFAEMRELGIEPNDVTFVAVLNACSHGGLVDEGF 322
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
K+F+ M+ + + P I+HYGCL+D+L RAG LE+A +AS +P V W +
Sbjct: 323 KYFN-MMRKMGIRPSIQHYGCLVDLLGRAGFLEEAFNLASSLPKD-PGFVTWSS 374
>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Cucumis sativus]
Length = 766
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 157/294 (53%), Gaps = 27/294 (9%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQ-SHVYVNTALGDMYVSLGFLKDSSK 80
D +TY + L +LG ++HA K G + ++V ++ A+ + Y G L+D K
Sbjct: 373 LDHYTYCSVFNAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRK 432
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F+ + +R+L++W T ++ YS+ + ++A+ +F M A E P++ T
Sbjct: 433 VFNRMEDRDLISW----------TSLVTAYSQCSEWDKAIEIFSNMRA-EGIAPNQFTFS 481
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+VL + + Q +HG K G + D + + L+D YAKCGC+ A K+F +
Sbjct: 482 SVLVSCANLCLLEYGQQVHGIICKVGLD-MDKCIESALVDMYAKCGCLGDAKKVF--NRI 538
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGL 249
+ VSWT II+G A HG+ +A++ F RM ++G++PN + EEGL
Sbjct: 539 SNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEGL 598
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++F M + ++P+++HY C++D+L R G L A E S +P + N +VW+T
Sbjct: 599 QYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVE-PNEMVWQT 651
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 103/209 (49%), Gaps = 12/209 (5%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D F YS +++ C+ L LG +HA GF SH +V+TAL +MY L ++DS K+F
Sbjct: 170 DQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKVF 229
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + E N+V+WN +ITG +D + LF RM E P T + V
Sbjct: 230 NTMTEVNVVSWNAMITGFTSNDLYLDAFD----------LFLRMMG-EGVTPDAQTFIGV 278
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
AI +V + + GY + G ++ + V LID +KCG + A +F +
Sbjct: 279 AKAIGMLRDVNKAKEVSGYALELGVDS-NTLVGTALIDMNSKCGSLQEARSIFNSHFITC 337
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERM 231
+ W +ISG+ G ++A+E F +M
Sbjct: 338 RFNAPWNAMISGYLRSGFNEKALELFAKM 366
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 12/197 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT+S ++ +C L G Q+H + KVG + +AL DMY G L D+ K+F
Sbjct: 476 NQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVF 535
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + + V+W II G + GI+D +AL LFRRM EP+ +T L V
Sbjct: 536 NRISNADTVSWTAIIAGHAQ-HGIVD---------DALQLFRRMVQLG-VEPNAVTFLCV 584
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G V +K ++ C++D ++ G + A + V+
Sbjct: 585 LFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEP 644
Query: 203 KNLVSWTTIISGFAMHG 219
+V W T++ +HG
Sbjct: 645 NEMV-WQTLLGACRVHG 660
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 101/235 (42%), Gaps = 24/235 (10%)
Query: 14 SHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSH---VYVNTALGDMYV 70
SH + PL D L+R CV + +H K F +H V +N + Y
Sbjct: 64 SHLQIQPLVD------LLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNH-VAHAYS 116
Query: 71 SLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE 130
+ + +LFD++ +RN +W V+I GL + +DG+ F M + +
Sbjct: 117 KCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFE----------FFCEMQS-Q 165
Query: 131 YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190
P + +L + ++H RGF + VS L++ YAK I
Sbjct: 166 GIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTF-VSTALLNMYAKLQEIED 224
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG 245
+ K+F ++ N+VSW +I+GF + + +A + F RM G+ P+ IG
Sbjct: 225 SYKVF--NTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIG 277
>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g02980-like [Brachypodium distachyon]
Length = 615
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 94/292 (32%), Positives = 153/292 (52%), Gaps = 27/292 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++T+ L++ C G Q H V KVG H YV L +MY G + + +F
Sbjct: 141 DTYTFVSLLKACAAARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMF 200
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ +V++N +IT V R +R EAL LFR M A + + + +T+++V
Sbjct: 201 GRVDGECVVSYNAMITAAV----------RSSRPGEALVLFREMQA-KGLKLTSVTLISV 249
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + + IH Y K ++ + V+ LID Y KCG + A +F+ ++
Sbjct: 250 LSACALLGALELGRWIHEYVRKVQLDSL-VKVNTALIDMYGKCGSLEDAISVFQ--GMES 306
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
++ +W+ +I +A H G+EA+ FE M+K G+KP+ +G EGL++
Sbjct: 307 RDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYACSHSGLVSEGLQY 366
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
FD M E ++P IKHYGC+ D+L R+G+L++A E +P + T ++WRT
Sbjct: 367 FDSM-REFGLVPGIKHYGCVADLLARSGQLDRAYEFIDELPIKPT-AILWRT 416
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 56/209 (26%), Positives = 91/209 (43%), Gaps = 15/209 (7%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
S T ++ C L LG +H KV S V VNTAL DMY G L+D+ +F
Sbjct: 243 SVTLISVLSACALLGALELGRWIHEYVRKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQ 302
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
+ R+ W+V+I Y+ + EA++LF M + +P ++T L VL
Sbjct: 303 GMESRDRQAWSVMIV----------AYANHSYGREAISLFEEMKK-QGIKPDDVTFLGVL 351
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNAF-DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
A +G V + + + R F I C+ D A+ G + A + ++ + +
Sbjct: 352 YACSHSGLVS--EGLQYFDSMREFGLVPGIKHYGCVADLLARSGQLDRAYEFIDELPI-K 408
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERM 231
+ W T++S G + FER+
Sbjct: 409 PTAILWRTLLSACGSRGDADLGKQVFERI 437
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 120/293 (40%), Gaps = 25/293 (8%)
Query: 44 TQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS-----KLFDELPERNLVTW-NVII 97
QLHA K G Q+H T L + G K + ++FD +P V W N ++
Sbjct: 48 AQLHAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQVFDRIPGPGDVVWYNTLL 107
Query: 98 TGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQL 157
G + + G +R + EA +F RM E P T +++L A +
Sbjct: 108 RGYARCSAA--GGAR-PPAEEAARVFVRMLE-EGVAPDTYTFVSLLKACAAARAGEEGRQ 163
Query: 158 IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAM 217
HG K G + +V LI+ YA+CG +A +F VD + +VS+ +I+
Sbjct: 164 AHGVAVKVGAAEHE-YVLPTLINMYAECGDARAARTMF--GRVDGECVVSYNAMITAAVR 220
Query: 218 HGMGKEAVENFERMQKVGLKPNRSWRI----------GEEGLKFFDKMVEECEVLPDIKH 267
EA+ F MQ GLK I E ++ + V + ++ +K
Sbjct: 221 SSRPGEALVLFREMQAKGLKLTSVTLISVLSACALLGALELGRWIHEYVRKVQLDSLVKV 280
Query: 268 YGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITL 320
LID+ + G LE A V G+ S+ + W + +SY I+L
Sbjct: 281 NTALIDMYGKCGSLEDAISVFQGMESR--DRQAWSVMIVAYANHSYGREAISL 331
>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 614
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 95/315 (30%), Positives = 150/315 (47%), Gaps = 37/315 (11%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
+ C L LG ++H + + AL DMY G + + ++FD + +N+
Sbjct: 217 LSACAVLRNLELGKEIHDYIAS-ELDLTTIMGNALLDMYCKCGHVSVAREIFDAMTVKNV 275
Query: 91 VTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALALFRRMAAC 129
W ++TG +V WT +I+GY + NR E +ALF M
Sbjct: 276 NCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQI- 334
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
+P + ++ +L ++G + + IH Y ++ D V LI+ YAKCGCI
Sbjct: 335 RGVKPDKFIVVTLLTGCAQSGALEQGKWIHNYIDENRIKV-DAVVGTALIEMYAKCGCIE 393
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG---- 245
+ ++F + K+ SWT+II G AM+G EA+E F+ MQ GLKP+ +
Sbjct: 394 KSFEIF--NGLKEKDTTSWTSIICGLAMNGKPSEALELFKAMQTCGLKPDDITFVAVLSA 451
Query: 246 -------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNV 298
EEG K F M + P+++HYGC ID+L RAG L++AEE+ +P+Q +
Sbjct: 452 CSHAGLVEEGRKLFHSMSSMYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPAQNNEI 511
Query: 299 VVWRTGFLRLLINSY 313
+V G L +Y
Sbjct: 512 IVPLYGALLSACRTY 526
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 120/228 (52%), Gaps = 29/228 (12%)
Query: 8 QQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGD 67
QQ+ H P D++TY ++++ + G ++HA K G + YV + D
Sbjct: 97 QQLREHGVWP-----DNYTYPYVLKGIGCIGEVREGEKVHAFVVKTGLEFDPYVCNSFMD 151
Query: 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA 127
MY LG ++ +++F+E+P+R+ V+WN++I+ GY R R EA+ ++RRM
Sbjct: 152 MYAELGLVEGFTQVFEEMPDRDAVSWNIMIS----------GYVRCKRFEEAVDVYRRMW 201
Query: 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQL---IHGYGEKRGFNAFDIH--VSNCLIDTY 182
+P+E T+++ L A +RN +L IH Y + D+ + N L+D Y
Sbjct: 202 TESNEKPNEATVVSTLSAC---AVLRNLELGKEIHDYIA----SELDLTTIMGNALLDMY 254
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
KCG + A ++F+ +V KN+ WT++++G+ + G +A FER
Sbjct: 255 CKCGHVSVAREIFDAMTV--KNVNCWTSMVTGYVICGQLDQARNLFER 300
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 134/292 (45%), Gaps = 35/292 (11%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQ-SHVYVNTALG-DMYVSLGFLKDSSKLFD 83
TY L+++C ++S Q+ A VG Q +N + M SLG ++++F+
Sbjct: 10 TYISLLKSCKSMSQLK---QIQAHIFCVGLQQDRDTLNKLMAFSMDSSLGDFNYANRIFN 66
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
+ + +L +N++I VK G R A++LF+++ P T VL
Sbjct: 67 YIHDPSLFIYNLMIKAFVK-----SGSFR-----SAISLFQQLRE-HGVWPDNYTYPYVL 115
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
I GEVR + +H + K G FD +V N +D YA+ G + +++FE+ + +
Sbjct: 116 KGIGCIGEVREGEKVHAFVVKTGLE-FDPYVCNSFMDMYAELGLVEGFTQVFEE--MPDR 172
Query: 204 NLVSWTTIISGFAMHGMGKEAVENFERM-QKVGLKPNRSWRIG-----------EEGLKF 251
+ VSW +ISG+ +EAV+ + RM + KPN + + E G +
Sbjct: 173 DAVSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEI 232
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
D + E ++ + + L+D+ + G + A E+ + + NV W +
Sbjct: 233 HDYIASELDLTTIMGN--ALLDMYCKCGHVSVAREIFDAMT--VKNVNCWTS 280
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 15/186 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D F L+ C G +H + + V TAL +MY G ++ S ++F
Sbjct: 340 DKFIVVTLLTGCAQSGALEQGKWIHNYIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIF 399
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMN-RSNEALALFRRMAACEYTEPSEITILA 141
+ L E++ +W II GL MN + +EAL LF+ M C +P +IT +A
Sbjct: 400 NGLKEKDTTSWTSIICGLA-----------MNGKPSEALELFKAMQTCGL-KPDDITFVA 447
Query: 142 VLPAIWKNGEVRNC-QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
VL A G V +L H ++ C ID + G + A +L +
Sbjct: 448 VLSACSHAGLVEEGRKLFHSMSSMYHIEP-NLEHYGCFIDLLGRAGLLQEAEELVKKLPA 506
Query: 201 DRKNLV 206
++
Sbjct: 507 QNNEII 512
>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
Length = 625
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 157/286 (54%), Gaps = 28/286 (9%)
Query: 23 DSFTYSFLIRTCV-TLSYPNLGTQLHAVFSK----VGFQSHVYVNTALGDMYVSLGFLKD 77
D++T S L+ C + + G +LH K +G S V++ L DMY +
Sbjct: 227 DAYTISSLLPLCDGDMGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVV 286
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
++FD + RN+ +W T +I+GY S+EAL+LFR M + EP+ +
Sbjct: 287 GRRVFDRMKCRNVFSW----------TAMINGYVENGDSDEALSLFRDMQVIDGVEPNRV 336
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
++++VLPA + + + IHG+ ++ N ++ + N LID Y+KCG + SA ++FED
Sbjct: 337 SLVSVLPACSSFSGLLSGRQIHGFAVRKELNN-EVSLCNALIDMYSKCGSLDSARRVFED 395
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------E 246
S+ K+ +SW+++ISG+ +HG G+EA+ +++M + G++P+ +G
Sbjct: 396 DSL-CKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACGRSGLVN 454
Query: 247 EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
EGL + ++ + + P ++ C++D+L RAG+L++A + IP
Sbjct: 455 EGLNIYSSVINDYGIEPTLEICACIVDMLGRAGQLDRALDFIKAIP 500
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 104/227 (45%), Gaps = 19/227 (8%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D FT S L + L G +H + GF S V ++ MY G +S K
Sbjct: 121 LPDDFTLSTLSKVSSELGALFSGKSIHGKSIRTGFVSDTVVANSIMSMYCKCGNFDESRK 180
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FDE+ RN +WNV+I G + G N E ++M E P TI
Sbjct: 181 VFDEMTIRNSGSWNVLIAGYA-----VSG--NCNFREETWEFVKQMQMDE-VRPDAYTIS 232
Query: 141 AVLP------AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
++LP W G +C ++ G ++ D+H+ CLID Y++ + ++
Sbjct: 233 SLLPLCDGDMGKWDYGRELHCYIVKNE-LVLGLDS-DVHLGCCLIDMYSRSNKVVVGRRV 290
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNR 240
F+ +N+ SWT +I+G+ +G EA+ F MQ + G++PNR
Sbjct: 291 FDRMKC--RNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGVEPNR 335
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/298 (24%), Positives = 125/298 (41%), Gaps = 41/298 (13%)
Query: 35 VTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWN 94
VT L Q H+ +G + ++ T L Y S +FD L +N+ WN
Sbjct: 34 VTHKSLKLTRQSHSRILSLGLSQNSFLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWN 93
Query: 95 VIITGLVKWTGIIDGYSRMNR-SNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVR 153
+I G VK NR NEA LF +M + + P + T+ + + G +
Sbjct: 94 SLINGCVK-----------NRLYNEAFQLFNQMCSSDVL-PDDFTLSTLSKVSSELGALF 141
Query: 154 NCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIIS 213
+ + IHG + GF + D V+N ++ Y KCG + K+F++ ++ +N SW +I+
Sbjct: 142 SGKSIHGKSIRTGFVS-DTVVANSIMSMYCKCGNFDESRKVFDEMTI--RNSGSWNVLIA 198
Query: 214 GFAMHG---MGKEAVENFERMQKVGLKPNR---------------SWRIGEEGLKFFDKM 255
G+A+ G +E E ++MQ ++P+ W G E + K
Sbjct: 199 GYAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDMGKWDYGRELHCYIVKN 258
Query: 256 VEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSY 313
+ D+ CLID+ R+ ++ V + + NV W +IN Y
Sbjct: 259 ELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRM--KCRNVFSWTA-----MINGY 309
>gi|413934265|gb|AFW68816.1| hypothetical protein ZEAMMB73_462632 [Zea mays]
Length = 648
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 153/315 (48%), Gaps = 37/315 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + C + LG +LH G + V + A+ DMYV G L+ ++ +F
Sbjct: 223 DEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRCTVRLMNAVMDMYVKCGSLELANSVF 282
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
+ + R V+W +I G + W ++ GY + + EA+A
Sbjct: 283 ERISNRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIA 342
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M + +P+EIT++ +L A + G + +H Y ++ + + + L+D
Sbjct: 343 LFHEMQKSK-VDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHKLH-LSVALGTSLVDM 400
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG I A +F + V +N ++WT++I G A HG EA+E F+RM +GL+P+
Sbjct: 401 YAKCGNIKKAICVFNEIPV--QNALTWTSMICGLANHGHADEAIEYFQRMIDLGLQPDEI 458
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
IG E G +FF M + + +KHY C+ID+L RAG L++AE++ +
Sbjct: 459 TFIGVLSACCHAGLVEAGRQFFSLMHAKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNA 518
Query: 291 IPSQITNVVVWRTGF 305
+P + VVW F
Sbjct: 519 MPMD-PDAVVWGALF 532
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 136/284 (47%), Gaps = 25/284 (8%)
Query: 7 LQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALG 66
L + +HS S P D T+ FLI+ C L Y + G + K+GF + V+V A
Sbjct: 107 LYRALLHSGSARP---DHLTFPFLIKACARLQYRSYGAAVLGHVQKLGFSADVFVVNAAM 163
Query: 67 DMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM 126
+ G + + +LFDE P R++V+WN +I GY R EAL LF R+
Sbjct: 164 HFWSVRGPMAFARRLFDESPVRDVVSWNT----------LIGGYVRSGLPREALELFWRL 213
Query: 127 AA-CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC 185
A P E+T++ + + G++ + +H + + +G + + N ++D Y KC
Sbjct: 214 AEDGNAVRPDEVTVIGAVSGCAQMGDLELGKRLHEFVDNKGVRC-TVRLMNAVMDMYVKC 272
Query: 186 GCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW--- 242
G + A+ +FE S + VSWTT+I G A GM ++A F+ M + + P +
Sbjct: 273 GSLELANSVFERIS--NRTAVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAG 330
Query: 243 ----RIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLE 282
+ G+E + F +M ++ +V P+ L+ + G LE
Sbjct: 331 YVQNKQGKEAIALFHEM-QKSKVDPNEITMVNLLSACSQLGALE 373
>gi|297599966|ref|NP_001048246.2| Os02g0769900 [Oryza sativa Japonica Group]
gi|46805413|dbj|BAD16915.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|255671273|dbj|BAF10160.2| Os02g0769900 [Oryza sativa Japonica Group]
Length = 438
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 168/321 (52%), Gaps = 41/321 (12%)
Query: 16 SPLPPLFDSFTYSFLIRTCV-TLSYP---NLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
SP P+ + T ++ C + S P L +HA K+ F SH+ ++T L Y +
Sbjct: 4 SPAAPVPNDVTLLTVLSACADSPSSPLARRLALSVHARVLKL-FPSHLLLSTCLVRFYFA 62
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITGL---------------------VKWTGIIDGY 110
+ +LFD +P R+ VT+N +I+GL V WT +IDG
Sbjct: 63 SRLPHLALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGC 122
Query: 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF 170
+ R +EA+ FR M + EP +T++AV+ A + G + +H ++G
Sbjct: 123 VKNGRHDEAIDCFRAML-LDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLER- 180
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
++ ++N LID YA+CG + A ++F + + ++ +VSW ++I GFA +G +AVE+FE
Sbjct: 181 NVRIANSLIDMYARCGQVELARQVF--SGMRKRTVVSWNSMIVGFAANGRCADAVEHFEA 238
Query: 231 MQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
M++ G KP+ G +EGL+++D M E + ++HYGC++D+L R+G
Sbjct: 239 MRREGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSG 298
Query: 280 RLEQAEEVASGIPSQITNVVV 300
+LE+A V + +P + VV+
Sbjct: 299 QLEEAMRVVTTMPMRPNEVVL 319
>gi|224099379|ref|XP_002311462.1| predicted protein [Populus trichocarpa]
gi|222851282|gb|EEE88829.1| predicted protein [Populus trichocarpa]
Length = 538
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 144/264 (54%), Gaps = 26/264 (9%)
Query: 49 VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIID 108
+F K+ + + NT L + Y S G + +LF+E+PERN+ +WN +I
Sbjct: 170 LFDKMPNKDVMSWNTVL-NGYASNGDVMACERLFEEMPERNVFSWN----------ALIG 218
Query: 109 GYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN 168
GY+R +E L+ F+RM P++ T++ VL A + G + + +H Y E G+
Sbjct: 219 GYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKWVHVYAESHGYK 278
Query: 169 AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENF 228
+++V N L+D YAKCG + +A +F+ S+D K+L+SW TII G A+HG G +A+ F
Sbjct: 279 G-NVYVRNALMDMYAKCGVVETALDVFK--SMDNKDLISWNTIIGGLAVHGHGADALNLF 335
Query: 229 ERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILER 277
M+ G P+ IG E+G +F M ++ ++P I+HYGC++D+L R
Sbjct: 336 SHMKIAGENPDGITFIGILCACTHMGLVEDGFSYFKSMTDDYSIVPRIEHYGCIVDLLGR 395
Query: 278 AGRLEQAEEVASGIPSQITNVVVW 301
AG L A + +P + + V+W
Sbjct: 396 AGLLAHAVDFIRKMPIE-ADAVIW 418
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 68/312 (21%), Positives = 137/312 (43%), Gaps = 35/312 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT+ ++++CV ++ G ++H K GF+++ +V T L DMY S G + + ++F
Sbjct: 50 NCFTFPVILKSCVKINALKEGEEVHCFVIKSGFRANPFVATTLIDMYASGGAIHAAYRVF 109
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E+ ERN++ W +I G + ++ + + E + Y E ++
Sbjct: 110 GEMIERNVIAWTAMINGYITCCDLVTARRLFDLAPERDIVLWNTMISGYIEAKDV----- 164
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+R +L K D+ N +++ YA G + + +LFE+ +
Sbjct: 165 ---------IRARELFDKMPNK------DVMSWNTVLNGYASNGDVMACERLFEE--MPE 207
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-LKPNRS---------WRIGEEGL-KF 251
+N+ SW +I G+ +G E + F+RM G + PN + R+G L K+
Sbjct: 208 RNVFSWNALIGGYTRNGCFSEVLSAFKRMLVDGTVVPNDATLVNVLSACARLGALDLGKW 267
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLIN 311
E ++ L+D+ + G +E A +V + ++ +++ W T L ++
Sbjct: 268 VHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNK--DLISWNTIIGGLAVH 325
Query: 312 SYFFSPITLNSQ 323
+ + L S
Sbjct: 326 GHGADALNLFSH 337
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 14/141 (9%)
Query: 75 LKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134
++++ K+FD++PE N WN + GYS+ + + LFR+M + P
Sbjct: 1 MENAHKVFDQIPEPNASIWNAMFR----------GYSQNESHKDVIVLFRQMKGLDVM-P 49
Query: 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
+ T +L + K ++ + +H + K GF A + V+ LID YA G I +A ++
Sbjct: 50 NCFTFPVILKSCVKINALKEGEEVHCFVIKSGFRA-NPFVATTLIDMYASGGAIHAAYRV 108
Query: 195 FEDTSVDRKNLVSWTTIISGF 215
F + + +N+++WT +I+G+
Sbjct: 109 FGE--MIERNVIAWTAMINGY 127
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 34/196 (17%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
++ C L +LG +H G++ +VYV AL DMY G ++ + +F + ++
Sbjct: 252 VLSACARLGALDLGKWVHVYAESHGYKGNVYVRNALMDMYAKCGVVETALDVFKSMDNKD 311
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
L++WN II GL + G+ +AL LF M P IT + +L A
Sbjct: 312 LISWNTIIGGLA-----VHGHGA-----DALNLFSHMKIAG-ENPDGITFIGILCACTHM 360
Query: 150 GEVRNCQLIHGYGEKRGFNAFD-----------IHVSNCLIDTYAKCGCIFSASKLFEDT 198
G V + GF+ F I C++D + G + A
Sbjct: 361 GLVED-----------GFSYFKSMTDDYSIVPRIEHYGCIVDLLGRAGLLAHAVDFIRKM 409
Query: 199 SVDRKNLVSWTTIISG 214
++ + V W ++
Sbjct: 410 PIE-ADAVIWAALLGA 424
>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
Length = 1274
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 153/282 (54%), Gaps = 26/282 (9%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
+R C +L+ ++GTQLHA+ +K G + + + +L MY G + +++ FDE+ ++
Sbjct: 314 LRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDT 373
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
+++ +++G V+ ++ EA +F++M AC EP T+++++PA
Sbjct: 374 ISYGALLSGCVQ----------NGKAEEAFLVFKKMQACN-MEPDIATMVSLIPACSHLA 422
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
+++ + HG RG A + + N LID YAKCG I + ++F+ +++VSW T
Sbjct: 423 ALQHGKCSHGSVIIRGL-ALETSICNSLIDMYAKCGKIDLSRQVFDKMPA--RDVVSWNT 479
Query: 211 IISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEEC 259
+I+G+ +HG+GKEA F M+ G P+ I EG +FD M +
Sbjct: 480 MIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKY 539
Query: 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+LP ++HY C++D+L R G L++A + +P + +V VW
Sbjct: 540 GILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLK-ADVRVW 580
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 102/216 (47%), Gaps = 14/216 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ +T+ F+++ C L G +HA + G + ++V+TAL D+Y+ + +F
Sbjct: 99 NKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVF 158
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++P R++V WN ++ GY+ + A+A M P+ T++++
Sbjct: 159 AKMPMRDVVAWNAMLA----------GYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSL 208
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGF--NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
LP + ++G + IH Y + N + + L+D YAKC + A ++F V
Sbjct: 209 LPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPV 268
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
+N V+W+ +I GF + EA F+ M GL
Sbjct: 269 --RNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGL 302
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/243 (21%), Positives = 97/243 (39%), Gaps = 33/243 (13%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
FLV+K++Q + D T LI C L+ G H G
Sbjct: 393 FLVFKKMQACNMEP--------DIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETS 444
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
+ +L DMY G + S ++FD++P R++V+WN +I GY EA
Sbjct: 445 ICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIA----------GYGIHGLGKEAT 494
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQ-----LIHGYGEKRGFNAFDIHVS 175
LF M + P ++T + ++ A +G V + + H YG +
Sbjct: 495 TLFLGMKNQGFA-PDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYI---- 549
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH---GMGKEAVENFERMQ 232
C++D A+ G + A + + + + ++ W ++ +H +GK+ +++
Sbjct: 550 -CMVDLLARGGLLDEAYQFIQSMPL-KADVRVWGALLGACRIHKNIDLGKQVSRIIQKLG 607
Query: 233 KVG 235
G
Sbjct: 608 PEG 610
>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g13880-like [Vitis vinifera]
Length = 802
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 152/292 (52%), Gaps = 30/292 (10%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
FT+S +++ C T+ G Q+HA K QS ++ AL ++Y G ++D K F
Sbjct: 330 FTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHS 389
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
P+ ++V+W +I G V+ G +G L LF + +P E TI +L
Sbjct: 390 TPKLDVVSWTSLIVGHVQ-NGQFEG---------GLTLFHELLF-SGRKPDEFTISIMLS 438
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A V++ + IH Y K G F I + N I YAKCG I SA+ F++T +
Sbjct: 439 ACANLAAVKSGEQIHAYAIKTGIGNFTI-IQNSQICMYAKCGDIDSANMTFKETK--NPD 495
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFD 253
+VSW+ +IS A HG KEAV+ FE M+ G+ PN +G EEGL++F+
Sbjct: 496 IVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFE 555
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEE--VASGIPSQITNVVVWRT 303
M ++ + P++KH C++D+L RAGRL +AE + SG + V+WR+
Sbjct: 556 IMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEG---DPVMWRS 604
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 140/315 (44%), Gaps = 39/315 (12%)
Query: 15 HSPLP-----PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY 69
H+P P PL DS TY+ L++ G H K F+ +++ L MY
Sbjct: 6 HNPQPYYLGLPL-DSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMY 64
Query: 70 VSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC 129
G + KLFD +P+RN+V+WN +I+ GY++M +E + LF+ A
Sbjct: 65 CKCGETDVAKKLFDRMPKRNVVSWNSLIS----------GYTQMGFYHEVMNLFKE-ARM 113
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
+ T L + ++R +LIH G + ++N LID Y KCG I
Sbjct: 114 SDLRLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGG-PVLLTNSLIDMYCKCGRID 172
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEE-- 247
A +FE S D + VSW ++I+G+ G E + +M + GL N S+ +G
Sbjct: 173 WARLVFE--SADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLN-SYALGSALK 229
Query: 248 --GLKFFD-----KMVEECEVL----PDIKHYGCLIDILERAGRLEQAEEVASGIPSQIT 296
G F KM+ C V D+ L+D + G LE A ++ +P
Sbjct: 230 ACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPD--P 287
Query: 297 NVVVWR---TGFLRL 308
NVV++ GFL++
Sbjct: 288 NVVMYNAMIAGFLQM 302
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 96/198 (48%), Gaps = 9/198 (4%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G LH K+G V V TAL D Y +G L+D++K+F +P+ N+V +N +I G ++
Sbjct: 242 GKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQ 301
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
+ D + +NEA+ LF M + +PSE T ++L A + IH
Sbjct: 302 METMADEF-----ANEAMYLFFEMQS-RGMKPSEFTFSSILKACSTIEAFECGKQIHAQI 355
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
K + D + N L++ Y+ G I K F T + ++VSWT++I G +G +
Sbjct: 356 FKYNLQS-DEFIGNALVELYSLSGSIEDGLKCFHSTP--KLDVVSWTSLIVGHVQNGQFE 412
Query: 223 EAVENFERMQKVGLKPNR 240
+ F + G KP+
Sbjct: 413 GGLTLFHELLFSGRKPDE 430
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 21/226 (9%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D FT+S + C LG +HA+ + G V + +L DMY G + + +
Sbjct: 118 LDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLV 177
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+ E + V+WN +I GY R+ ++E L L +M + + +
Sbjct: 178 FESADELDSVSWNSLIA----------GYVRIGSNDEMLRLLVKMLR-HGLNLNSYALGS 226
Query: 142 VLPAIWKN--GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
L A N + +++HG K G + D+ V L+DTYAK G + A+K+F+
Sbjct: 227 ALKACGSNFSSSIECGKMLHGCAVKLGLD-LDVVVGTALLDTYAKIGDLEDATKIFK--L 283
Query: 200 VDRKNLVSWTTIISGF-AMHGM----GKEAVENFERMQKVGLKPNR 240
+ N+V + +I+GF M M EA+ F MQ G+KP+
Sbjct: 284 MPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSE 329
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 12/196 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT S ++ C L+ G Q+HA K G + + + MY G + ++ F
Sbjct: 429 DEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTF 488
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E ++V+W+V+I+ ++ + EA+ LF M P+ IT L V
Sbjct: 489 KETKNPDIVSWSVMIS----------SNAQHGCAKEAVDLFELMKGSGIA-PNHITFLGV 537
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G V +K ++ S C++D + G + A D+ +
Sbjct: 538 LVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFE- 596
Query: 203 KNLVSWTTIISGFAMH 218
+ V W +++S +H
Sbjct: 597 GDPVMWRSLLSACRVH 612
>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
Length = 1286
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 154/290 (53%), Gaps = 27/290 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT S L++ + + GTQLHA K G+QS VYV +AL DMY G + + F
Sbjct: 188 NHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAF 247
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +P ++ V+WN +I+ G++R AL L +M + +P+ T +V
Sbjct: 248 DGMPTKSEVSWNALIS----------GHARKGEGEHALHLLWKMQRKNF-QPTHFTYSSV 296
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + + +H + K G + N L+D YAK G I A ++F+ + +
Sbjct: 297 LSACASIGALEQGKWVHAHMIKSGLKLIAF-IGNTLLDMYAKAGSIDDAKRVFD--RLVK 353
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKF 251
++VSW T+++G A HG+GKE ++ FE+M ++G++PN + +EGL +
Sbjct: 354 PDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYY 413
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F+ ++++ +V PD+ HY +D+L R G L++AE +P + T VW
Sbjct: 414 FE-LMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPT-AAVW 461
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 139/290 (47%), Gaps = 31/290 (10%)
Query: 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
YS L++ C L G +HA F +H+ + + +MY G L D+ ++FDE+
Sbjct: 90 YSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEM 149
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
P +++VT WT +I G+S+ NR +AL LF +M + +P+ T+ ++L A
Sbjct: 150 PTKDMVT----------WTALIAGFSQNNRPRDALLLFPQMLRLGF-QPNHFTLSSLLKA 198
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
+ +H + K G+ + ++V + L+D YA+CG + +A F+ + K+
Sbjct: 199 SGSEHGLDPGTQLHAFCLKYGYQS-SVYVGSALVDMYARCGHMDAAQLAFD--GMPTKSE 255
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---------SWRIG--EEGLKFFDK 254
VSW +ISG A G G+ A+ +MQ+ +P IG E+G
Sbjct: 256 VSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAH 315
Query: 255 MVEECEVLPDIKHYG-CLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
M++ L I G L+D+ +AG ++ A+ V + +VV W T
Sbjct: 316 MIKSGLKL--IAFIGNTLLDMYAKAGSIDDAKRVFDRLVK--PDVVSWNT 361
>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
Length = 650
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 154/315 (48%), Gaps = 37/315 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + C + LG +LH G + V + A+ DMYV G L+ + +F
Sbjct: 223 DEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGSLELAKSVF 282
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
+ + + +V+W +I G + W ++ GY + + EA+A
Sbjct: 283 ERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIA 342
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M + +P+EIT++ +L A + G + +H Y ++ + + L+D
Sbjct: 343 LFHEMQESK-VDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLY-LSVALGTSLVDM 400
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG I A +F++ + KN ++WT +I G A HG EA+E F+RM +GL+P+
Sbjct: 401 YAKCGNIKKAICIFKE--IPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEI 458
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
IG +EG +FF M E+ + +KHY C+ID+L RAG L++AE++ +
Sbjct: 459 TFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNT 518
Query: 291 IPSQITNVVVWRTGF 305
+P + VVW F
Sbjct: 519 MPMD-PDAVVWGALF 532
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/268 (28%), Positives = 129/268 (48%), Gaps = 22/268 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ FL++ C L Y G + K+GF + V+V A + G + + +LF
Sbjct: 120 DHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNAGVHFWSVSGSMVLARRLF 179
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA-CEYTEPSEITILA 141
DE P R++V+WN +I GY R EAL LF R+ + P E+T++
Sbjct: 180 DESPARDVVSWNT----------LIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIG 229
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+ + G++ + +H + + +G + + N ++D Y KCG + A +FE +D
Sbjct: 230 AVSGCAQMGDLELGKRLHEFVDSKGVRC-TVRLMNAVMDMYVKCGSLELAKSVFE--RID 286
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW-------RIGEEGLKFFDK 254
K +VSWTT+I G A GM ++A F+ M + + P + + G+E + F +
Sbjct: 287 NKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHE 346
Query: 255 MVEECEVLPDIKHYGCLIDILERAGRLE 282
M +E +V P+ L+ + G LE
Sbjct: 347 M-QESKVDPNEITMVNLLSACSQLGALE 373
>gi|220061997|gb|ACL79586.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
Length = 587
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 156/301 (51%), Gaps = 35/301 (11%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P D+ + SF ++ S + QLHA+ ++G + V + T L D Y G L +
Sbjct: 107 PRPDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASAR 166
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC-----EYTEP 134
K+FDE+ R++ TWN ++ GL + T N ALALF R+A EP
Sbjct: 167 KVFDEMTVRDVATWNSLLAGLAQGT----------EPNLALALFHRLANSFQELPSREEP 216
Query: 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
+E+TI+A L A + G +++ +H + ++ G + ++ V N LID Y+KCG + A +
Sbjct: 217 NEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDR-NVRVCNSLIDMYSKCGSLSRALDV 275
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP------------NRSW 242
F + + LVS+ I +MHG G +A+ F+ M ++P N S
Sbjct: 276 FHSIKPEDQTLVSYNAAIQAHSMHGHGGDALRLFDEM-PTRIEPDGVTYLAVLCGCNHSG 334
Query: 243 RIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
+ ++GL+ F+ M V P++KHYG ++D+L RAGRL +A + +P ++V+W+
Sbjct: 335 LV-DDGLRVFNSM----RVAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFP-ADIVLWQ 388
Query: 303 T 303
T
Sbjct: 389 T 389
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 82/213 (38%), Gaps = 31/213 (14%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL-PERN 89
+ C + G +H + G +V V +L DMY G L + +F + PE
Sbjct: 225 LSACAQIGLLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQ 284
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
LV + I +S +AL LF M EP +T LAVL +
Sbjct: 285 T---------LVSYNAAIQAHSMHGHGGDALRLFDEMPT--RIEPDGVTYLAVLCGCNHS 333
Query: 150 GEVRNCQLIHGYGEKRGFNAFDIHVS----NCLIDTYAKCGCIFSASKLFEDTSVDR--- 202
G V + R FN+ + + ++D + G + A DT +
Sbjct: 334 GLVDDGL--------RVFNSMRVAPNMKHYGTIVDLLGRAGRLTEAY----DTVISMPFP 381
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
++V W T++ MHG+ + A ++ ++G
Sbjct: 382 ADIVLWQTLLGAAKMHGVVELAELAANKLAELG 414
>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
Length = 666
Score = 150 bits (379), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 156/293 (53%), Gaps = 30/293 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ C LG Q+H+ GF S++ + AL D+Y G L+ + LF
Sbjct: 222 DESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLF 281
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ LP +++++WN +I GY+ MN EAL LF+ M T P+++T+L++
Sbjct: 282 EGLPYKDVISWNTLI----------GGYTHMNLYKEALLLFQEMLRSGET-PNDVTMLSI 330
Query: 143 LPAIWKNGEVRNCQLIHGYGEKR---GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
LPA G + + IH Y +KR NA + S LID YAKCG I +A ++F S
Sbjct: 331 LPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTS--LIDMYAKCGDIEAAHQVF--NS 386
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
+ K+L SW +I GFAMHG + + F RM+K G++P+ +G + G
Sbjct: 387 ILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLG 446
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F M ++ ++ P ++HYGC+ID+L +G ++AEE+ + + + + V+W
Sbjct: 447 RHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEME-PDGVIW 498
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/306 (28%), Positives = 149/306 (48%), Gaps = 41/306 (13%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L +S+T+ FL+++C G Q+H K+G +YV+T+L MYV G L+D+ K
Sbjct: 88 LPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHK 147
Query: 81 LFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEA 119
+FDE P R++V++ +I G +V W +I GY+ EA
Sbjct: 148 VFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEA 207
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
L LF+ M P E T++ V+ A ++G + + +H + + GF + ++ + N LI
Sbjct: 208 LELFKDMMKTN-VRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGS-NLKIVNALI 265
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D Y+KCG + +A LFE + K+++SW T+I G+ + KEA+ F+ M + G PN
Sbjct: 266 DLYSKCGELETACGLFE--GLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 323
Query: 240 R--------------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAE 285
+ IG + DK ++ ++ LID+ + G +E A
Sbjct: 324 DVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLR--TSLIDMYAKCGDIEAAH 381
Query: 286 EVASGI 291
+V + I
Sbjct: 382 QVFNSI 387
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 78/326 (23%), Positives = 133/326 (40%), Gaps = 57/326 (17%)
Query: 46 LHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTG 105
+HA K G + Y + L + + S FD LP V + L+ W
Sbjct: 9 IHAQMIKTGLHNTNYALSKLIEFCIL-------SPHFDGLPYAISVFETIQEPNLLIWNT 61
Query: 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
+ G++ + AL L+ M + P+ T +L + K+ + Q IHG+ K
Sbjct: 62 MFRGHALSSDPVSALKLYVCMISLGLL-PNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKL 120
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT--------------------------- 198
G + D++V LI Y + G + A K+F+++
Sbjct: 121 GCD-LDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKM 179
Query: 199 --SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI------GEEGLK 250
+ K++VSW +ISG+A G KEA+E F+ M K ++P+ S + + G
Sbjct: 180 FDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSI 239
Query: 251 FFDKMV----EECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFL 306
+ V ++ ++K LID+ + G LE A + G+P + +V+ W T
Sbjct: 240 ELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYK--DVISWNT--- 294
Query: 307 RLLINSYFFSPITLNSQRLFFFPAAL 332
LI Y + + L + L F L
Sbjct: 295 --LIGGY--THMNLYKEALLLFQEML 316
>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
Length = 602
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 158/313 (50%), Gaps = 41/313 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D S ++ C L + +H K G + +V++ L Y G L + + F
Sbjct: 191 DMVAISTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFF 250
Query: 83 DELPERNLVTWNVII---------------------TGLVKWTGIIDGYSRMNRSNEALA 121
E P +N+V WN +I +V W +I G++R+ + EAL
Sbjct: 251 QETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALT 310
Query: 122 LFRRMAACEYT--EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
F M E++ P+ +T+L+ L A +G + IH Y +K N D + + LI
Sbjct: 311 WFHEM---EFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNR-DGSLDSSLI 366
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D Y+KCG I A ++FE+++ R++L +WT+I+ G AMHG G++A+ F +M++ ++P+
Sbjct: 367 DMYSKCGDIDKAVQIFEEST--RRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPD 424
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
+G ++G +F M + ++P ++HYGC++D+L R G L++A ++
Sbjct: 425 DVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGCMVDLLGRMGCLKEAYDLI 484
Query: 289 SGIPSQITNVVVW 301
G+P + N ++W
Sbjct: 485 MGMPME-ANEIIW 496
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 111/246 (45%), Gaps = 41/246 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T+ +L++ V+ G ++HA + GF +V+ AL YV+ G + ++F
Sbjct: 90 NGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVF 149
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ + GLV WT II Y + +AL LFR M T P + I V
Sbjct: 150 DEMRQP----------GLVLWTLIIRAYVCVTFPEKALELFRTMREVGLT-PDMVAISTV 198
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT---- 198
+ A G++ + +H + EK G D VS+ LI TY +CG + A + F++T
Sbjct: 199 VSACGLLGDLGVAKAMHCFIEKSGIEV-DAFVSSTLISTYGECGSLDYAYRFFQETPMKN 257
Query: 199 ----------SVDRKNL---------------VSWTTIISGFAMHGMGKEAVENFERMQK 233
SV+ NL VSW ++I GFA G +EA+ F M+
Sbjct: 258 IVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEF 317
Query: 234 VGLKPN 239
G+ PN
Sbjct: 318 SGVSPN 323
>gi|242095216|ref|XP_002438098.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
gi|241916321|gb|EER89465.1| hypothetical protein SORBIDRAFT_10g007970 [Sorghum bicolor]
Length = 596
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 89/297 (29%), Positives = 153/297 (51%), Gaps = 33/297 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ + SF ++ S QLHA+ ++G + V + T L D Y G L + ++F
Sbjct: 119 DALSLSFALKATARCSDAFATLQLHAILVRLGVAADVRLMTTLLDSYAKCGDLASARRVF 178
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC-----EYTEPSEI 137
DE+ R++ TWN ++ GL + T N AL LFRR+A EP+E+
Sbjct: 179 DEMSVRDVATWNALLAGLAQGT----------EPNLALVLFRRLAGSFRELPPREEPNEV 228
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
T++A L A + G +++ H + G ++ V N LID Y+KCG + A ++F
Sbjct: 229 TVVAALSACAQLGALKDGLAAHDFARTIG-AVGNVRVCNALIDMYSKCGSLSRALEVFHS 287
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------E 246
++ + LVS+ I +MHG G++A++ F+ M ++P+ + +
Sbjct: 288 IKLEDRTLVSYNATIQALSMHGHGEDALKLFDEM-PARIEPDEVTYLAVLGGCNHAGLVD 346
Query: 247 EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+G + FD M V P++KHYG ++D+L RAGRL +A ++ +P ++V+W+T
Sbjct: 347 DGRRVFDSM----RVPPNMKHYGTIVDLLGRAGRLAEAHDMIMHMPFP-ADIVLWQT 398
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 82/210 (39%), Gaps = 29/210 (13%)
Query: 18 LPPLFD--SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL 75
LPP + T + C L G H +G +V V AL DMY G L
Sbjct: 219 LPPREEPNEVTVVAALSACAQLGALKDGLAAHDFARTIGAVGNVRVCNALIDMYSKCGSL 278
Query: 76 KDSSKLFD--ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE 133
+ ++F +L +R LV++N I L S +AL LF M A E
Sbjct: 279 SRALEVFHSIKLEDRTLVSYNATIQAL----------SMHGHGEDALKLFDEMPA--RIE 326
Query: 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS----NCLIDTYAKCGCIF 189
P E+T LAVL G V + +R F++ + + ++D + G +
Sbjct: 327 PDEVTYLAVLGGCNHAGLVDD--------GRRVFDSMRVPPNMKHYGTIVDLLGRAGRLA 378
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
A + ++V W T++ MHG
Sbjct: 379 EAHDMIMHMPFP-ADIVLWQTLLGAAKMHG 407
>gi|115447355|ref|NP_001047457.1| Os02g0620800 [Oryza sativa Japonica Group]
gi|47847758|dbj|BAD21535.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|47847799|dbj|BAD21575.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536988|dbj|BAF09371.1| Os02g0620800 [Oryza sativa Japonica Group]
Length = 530
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 154/314 (49%), Gaps = 38/314 (12%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P + F Y ++R + L +H K GF H ++ T+L D Y G + D+
Sbjct: 111 PAPNQFVYPLVLRAACAIGV-QLVRSIHCHACKDGFYGHDFIRTSLLDGYSRYGMMGDAR 169
Query: 80 KLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNE 118
KLFD L +RN+V+W +++G + W II G ++ E
Sbjct: 170 KLFDGLTDRNVVSWTALVSGYARAGKVGDAIVLFERMPQRDVPAWNAIIAGCTQNGLFVE 229
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
A+ +FRRM E P+ T+ +L A G ++ ++IHGY R F V N L
Sbjct: 230 AVGIFRRMVD-EGFRPNGTTVSCLLSACGHLGMLKIGKVIHGYAW-RSCVGFGSSVVNGL 287
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
ID Y KCG + A +F+ + + L +W ++I+ A+HG + A+ F M+ G++P
Sbjct: 288 IDMYGKCGNLMEAKWIFD--AFSDRGLTTWNSLINCLALHGCSESAIAVFNSMRNEGVQP 345
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ +G +EGL++F+ M +E + P+I+HYGC++D+L RAGR + A
Sbjct: 346 DEVTFVGLLNACTHGGFVDEGLRYFELMCDEHGIEPEIEHYGCVVDLLCRAGRFQDAMNF 405
Query: 288 ASGIPSQITNVVVW 301
+ + Q + V+W
Sbjct: 406 INDMKVQ-PDEVIW 418
>gi|297741541|emb|CBI32673.3| unnamed protein product [Vitis vinifera]
Length = 819
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 153/302 (50%), Gaps = 36/302 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F++ +I + L N G QLHA K+G +S+V+V +A+ D Y L + ++ K F
Sbjct: 391 NQFSFGTVIPSSTALQDLNSGRQLHACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKAF 450
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
++ E N+V++ +I G +V W +I GYS+M + EA+
Sbjct: 451 EDTHEPNVVSYTTLIRGYLKKERFDDALALFRKMPERNVVSWNAMISGYSQMGYNEEAVN 510
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M E T P+E T + A+ + + HG K FD+ + N L+
Sbjct: 511 LFVVMLR-EGTLPNERTFPCAISAVANIAALGMGRSFHGSAVKF-LGKFDVFIGNSLVSF 568
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG + + +F ++ +KN+VSW +I G+A HG G EA+ FE+MQ GL+PN
Sbjct: 569 YAKCGSMEESLLVF--NTLPKKNIVSWNALICGYANHGRGMEAIYFFEKMQDTGLRPNSV 626
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+G ++G +F+K E L +H+ C++D+L R+GR ++AE+
Sbjct: 627 TLLGLLLACNHSGLVDKGYSYFNKARVEEPGLLTPEHHACMVDLLSRSGRFKEAEKFLHE 686
Query: 291 IP 292
+P
Sbjct: 687 LP 688
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 88/200 (44%), Gaps = 41/200 (20%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y + L D+ KLFDE+P W+V V T I ++R + EA+ F RM A
Sbjct: 336 YSASKALWDACKLFDEVP-----NWDV-----VSATATIGCFARYHHHEEAIYFFSRMLA 385
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
+P++ + V+P+ ++ + + +H K G + ++ V + ++D YAK I
Sbjct: 386 LN-IKPNQFSFGTVIPSSTALQDLNSGRQLHACAIKMGLES-NVFVGSAVVDFYAKLTSI 443
Query: 189 FSASKLFEDT-----------------------------SVDRKNLVSWTTIISGFAMHG 219
A K FEDT + +N+VSW +ISG++ G
Sbjct: 444 NEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFRKMPERNVVSWNAMISGYSQMG 503
Query: 220 MGKEAVENFERMQKVGLKPN 239
+EAV F M + G PN
Sbjct: 504 YNEEAVNLFVVMLREGTLPN 523
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
+++ Q IHG K G + + + +Y+ ++ A KLF++ V ++VS T
Sbjct: 309 QLKESQRIHGRAIKLGTTILEPDI----VCSYSASKALWDACKLFDE--VPNWDVVSATA 362
Query: 211 IISGFAMHGMGKEAVENFERMQKVGLKPNR 240
I FA + +EA+ F RM + +KPN+
Sbjct: 363 TIGCFARYHHHEEAIYFFSRMLALNIKPNQ 392
>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
[Vitis vinifera]
Length = 698
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 157/302 (51%), Gaps = 26/302 (8%)
Query: 13 HSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL 72
H L FD T ++ C L+ LG ++ + G + + + T+L DMY
Sbjct: 214 HEMLELDIRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKC 273
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT 132
G + + +LFD++ R++V W+ +I+G YS+ +R EAL LF M
Sbjct: 274 GQVDTARRLFDQMDRRDVVAWSAMISG----------YSQASRCREALDLFHEMQKAN-I 322
Query: 133 EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSAS 192
+P+EIT++++L + G + + +H + +K+ + + L+D YAKCG + S+
Sbjct: 323 DPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMK-LTVTLGTALMDFYAKCGSVESSI 381
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG------- 245
++F V KN++SWT +I G A +G GK+A+E F M + ++PN IG
Sbjct: 382 EVFGKMPV--KNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSH 439
Query: 246 ----EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+EG F M + + P I+HYGC++DIL RAG +E+A + +P Q N V+W
Sbjct: 440 AGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQ-PNAVIW 498
Query: 302 RT 303
RT
Sbjct: 499 RT 500
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 152/300 (50%), Gaps = 29/300 (9%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
+H +S P D FT+ +++ C L + G Q+HA+ K GF SH +V L MY +
Sbjct: 115 MHENSVQP---DEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYAN 171
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY 131
G ++ + ++FDE+ ERN+ TWN + GY++ E + LF M +
Sbjct: 172 CGEVEVARRVFDEMSERNVRTWNSMFA----------GYTKSGNWEEVVKLFHEMLELD- 220
Query: 132 TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191
E+T+++VL A + ++ + I+ Y E++G +++ L+D YAKCG + +A
Sbjct: 221 IRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITS-LVDMYAKCGQVDTA 279
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI------- 244
+LF+ +DR+++V+W+ +ISG++ +EA++ F MQK + PN +
Sbjct: 280 RRLFD--QMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCA 337
Query: 245 ---GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
E K+ +++ + + L+D + G +E + EV +P + NV+ W
Sbjct: 338 VLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMP--VKNVLSW 395
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 99/223 (44%), Gaps = 22/223 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T ++ +C L G +H K + V + TAL D Y G ++ S ++F
Sbjct: 325 NEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVF 384
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++P +N+++W V+I GL + + +AL F M + EP+++T + V
Sbjct: 385 GKMPVKNVLSWTVLIQGL----------ASNGQGKKALEYFYLMLE-KNVEPNDVTFIGV 433
Query: 143 LPAIWKNGEVRNCQ-LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G V + L G H C++D + G I A + ++ +
Sbjct: 434 LSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHY-GCMVDILGRAGLIEEAFQFIKNMPI- 491
Query: 202 RKNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKPNRS 241
+ N V W T+++ +H +G+E+++ Q + L+P S
Sbjct: 492 QPNAVIWRTLLASCKVHKNVEIGEESLK-----QLIILEPTHS 529
>gi|449487105|ref|XP_004157498.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 555
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 101/321 (31%), Positives = 164/321 (51%), Gaps = 48/321 (14%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF-----LKD 77
+ FTYSFL+ CV G Q+H G+ S++YV T L ++Y + G LK
Sbjct: 124 NGFTYSFLLSACVRSRLFREGEQIHGRVLVNGYWSNLYVRTNLINLYANGGDGGDFDLKR 183
Query: 78 SSKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRS 116
+ LFDE+P+ N+V WN ++ G V+ WT ++ G+++ +
Sbjct: 184 ARYLFDEMPDSNVVGWNSLLAGYVRRGDFDGARKVFDEMPERNVRTWTIMVAGFAQNGQC 243
Query: 117 NEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK----RGFNAFDI 172
AL+LF +M E ++ ++A L A + G++ + IHGY E+ R +
Sbjct: 244 KLALSLFDQMRRAG-VELDQVALVAALSACAELGDLTLGKWIHGYVERTWRSRHLPVL-V 301
Query: 173 HVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQ 232
++N LI YA CG + A K+FE+ + ++N VSW++II+GFA G G EA+ F+ M
Sbjct: 302 SLNNALIHMYASCGVMDLAYKVFEE--IPQRNTVSWSSIITGFAKQGCGVEAIRIFQLML 359
Query: 233 KVG---LKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERA 278
G ++P+ IG +G++ F M + V+P I+HYGC++D+L RA
Sbjct: 360 CSGQNEVRPDEITFIGALTACSHAGLISDGIRLFQSMHKTFGVIPQIEHYGCMVDLLSRA 419
Query: 279 GRLEQAEEVASGIPSQITNVV 299
G L +A + +P + N V
Sbjct: 420 GLLTEALSLIESMPMKPNNAV 440
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/248 (25%), Positives = 112/248 (45%), Gaps = 52/248 (20%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
F +S L ++CV S+ NL ++HA GF Y+ L +Y+S G L + K+F++
Sbjct: 29 FIFSVL-KSCV--SFRNL-AKIHAQIVVSGFSQKNYILNHLLSLYISFGSLGSAQKVFED 84
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM----------------AA 128
+ + WN II G++R S +++ LF+RM +A
Sbjct: 85 ITAPSTTVWN----------QIIKGHTRSKTSKKSIELFKRMTLAGVEANGFTYSFLLSA 134
Query: 129 CE----YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS--------- 175
C + E +I ++ W N VR LI+ Y FD+ +
Sbjct: 135 CVRSRLFREGEQIHGRVLVNGYWSNLYVRT-NLINLYANGGDGGDFDLKRARYLFDEMPD 193
Query: 176 ------NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFE 229
N L+ Y + G A K+F++ + +N+ +WT +++GFA +G K A+ F+
Sbjct: 194 SNVVGWNSLLAGYVRRGDFDGARKVFDE--MPERNVRTWTIMVAGFAQNGQCKLALSLFD 251
Query: 230 RMQKVGLK 237
+M++ G++
Sbjct: 252 QMRRAGVE 259
>gi|115482212|ref|NP_001064699.1| Os10g0442700 [Oryza sativa Japonica Group]
gi|31432332|gb|AAP53975.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113639308|dbj|BAF26613.1| Os10g0442700 [Oryza sativa Japonica Group]
gi|215694632|dbj|BAG89823.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768315|dbj|BAH00544.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 493
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 91/307 (29%), Positives = 157/307 (51%), Gaps = 39/307 (12%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSH-VYVNTALGDMYVSLGFLKDSSKLFD 83
T+ FL R L+ P L +HA + G H ++V+ +L MY + + +LFD
Sbjct: 63 LTFPFLARAAARLATPRLARAVHAQPLRRGLLPHDLHVSNSLVHMYAACALPGLARRLFD 122
Query: 84 ELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALAL 122
E+P N V+WN ++ G +V W+ +IDG + EALA+
Sbjct: 123 EIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREALAV 182
Query: 123 FRRMAAC----EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
F M A + +++T+++VL A G++ + +H Y E+ GF +I ++ L
Sbjct: 183 FEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGF-PLNIRLATSL 241
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
+D YAKCG I A ++F+ V+ +++ W +I G A+HGM +E+++ F++M+ G+ P
Sbjct: 242 VDMYAKCGAIVEALEVFQAVPVENTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAGVVP 301
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ + +E FF + +E + P ++HY CL+D+L RAGRLE+A V
Sbjct: 302 DEITYLSLLSACVHGGLVDEAWSFF-RSLEAQGLRPHVEHYACLVDVLGRAGRLEEAYGV 360
Query: 288 ASGIPSQ 294
+P +
Sbjct: 361 VKSMPMK 367
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 79/193 (40%), Gaps = 44/193 (22%)
Query: 153 RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED--------------- 197
R + +H +RG D+HVSN L+ YA C A +LF++
Sbjct: 79 RLARAVHAQPLRRGLLPHDLHVSNSLVHMYAACALPGLARRLFDEIPRPNHVSWNALLDG 138
Query: 198 --------------TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV-----GLKP 238
+ ++++VSW+ +I G G +EA+ FE M+ G++
Sbjct: 139 YAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREALAVFEMMEATAARHDGVRA 198
Query: 239 NRSWRIGEEGL----------KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
N + G + + +EE +I+ L+D+ + G + +A EV
Sbjct: 199 NDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLNIRLATSLVDMYAKCGAIVEALEVF 258
Query: 289 SGIPSQITNVVVW 301
+P + T+V++W
Sbjct: 259 QAVPVENTDVLIW 271
>gi|326530063|dbj|BAK08311.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 490
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 150/307 (48%), Gaps = 40/307 (13%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSSKLFD 83
T+ FL R L+ P L LHA ++G +YV +L MY + + +LFD
Sbjct: 61 LTFPFLGRAAARLASPRLALSLHAHPLRLGLLPWDLYVANSLVHMYAACALPDLARRLFD 120
Query: 84 ELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALAL 122
E+P NLV+WN ++ G +V W+ +IDG + EALAL
Sbjct: 121 EIPRPNLVSWNALLDGYAKCRDLLSARCVFNRMPQRDVVSWSAMIDGCVKCGEHREALAL 180
Query: 123 FRRMAAC---EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
F M A +++T+++VL A G++ + +H Y ++ GF ++ ++ L+
Sbjct: 181 FEMMEAAGAGNGVRANDVTMVSVLGACAHLGDLGRGRQMHRYLQEHGF-LLNLRLATSLV 239
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D YAKCG I A ++F V +++ W +I G A+HG+ E+VE F+ MQ G+ P+
Sbjct: 240 DMYAKCGAISEALEVFRAVPVTTTDVLIWNAVIGGLAVHGLSMESVEIFQEMQNSGVVPD 299
Query: 240 ------------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+GE F + +E + P ++HY CL+D+L RAG LE+A V
Sbjct: 300 EITYLVLLSACVHGGLVGEAWRLF--RSLEVQGLRPHVEHYACLVDVLGRAGHLEEAYGV 357
Query: 288 ASGIPSQ 294
+P +
Sbjct: 358 VKSMPME 364
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 70/140 (50%), Gaps = 16/140 (11%)
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
N L+D YAKC + SA +F + ++++VSW+ +I G G +EA+ FE M+ G
Sbjct: 131 NALLDGYAKCRDLLSARCVF--NRMPQRDVVSWSAMIDGCVKCGEHREALALFEMMEAAG 188
Query: 236 ----LKPN---------RSWRIGEEGL-KFFDKMVEECEVLPDIKHYGCLIDILERAGRL 281
++ N +G+ G + + ++E L +++ L+D+ + G +
Sbjct: 189 AGNGVRANDVTMVSVLGACAHLGDLGRGRQMHRYLQEHGFLLNLRLATSLVDMYAKCGAI 248
Query: 282 EQAEEVASGIPSQITNVVVW 301
+A EV +P T+V++W
Sbjct: 249 SEALEVFRAVPVTTTDVLIW 268
>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
Length = 783
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/290 (32%), Positives = 156/290 (53%), Gaps = 27/290 (9%)
Query: 14 SHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG 73
+ S L P D FT L+ C + + G ++H + G ++ +L +Y+ G
Sbjct: 302 TDSGLDP--DWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCG 359
Query: 74 FLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE 133
+ LFD + R+LV+WNV+I G YS+ +EA+ LFR+M + + +
Sbjct: 360 KPFAAQVLFDGMEHRSLVSWNVMIAG----------YSQNGLPDEAINLFRQMLS-DGIQ 408
Query: 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASK 193
P EI I+ V A + +R + +H + K DI VS+ +ID YAK GCI + +
Sbjct: 409 PYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTE-DIFVSSSIIDMYAKGGCIGLSQR 467
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-------- 245
+F+ + K++ SW II+G+ +HG GKEA+E FE+M ++GLKP+ G
Sbjct: 468 IFD--RLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHA 525
Query: 246 ---EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
E+GL++F++M+ + P ++HY C++D+L RAGR++ A + +P
Sbjct: 526 GLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMP 575
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 116/230 (50%), Gaps = 20/230 (8%)
Query: 10 IYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY 69
I + H P D+FT +I+ C L LG +H + +K+ S V+V AL MY
Sbjct: 199 ISVTEHKP-----DNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMY 253
Query: 70 VSLGFLKDSSK-LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
G ++++ K +FD + + + +WN ++ GY++ + +AL L+ +M
Sbjct: 254 GKCGLVEEAVKRVFDLMDTKTVSSWNALLC----------GYAQNSDPRKALDLYLQMTD 303
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
+P TI ++L A + + + IHG+ + G A D + L+ Y CG
Sbjct: 304 -SGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGL-AVDPFIGISLLSLYICCGKP 361
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
F+A LF+ ++ ++LVSW +I+G++ +G+ EA+ F +M G++P
Sbjct: 362 FAAQVLFD--GMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQP 409
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 101/217 (46%), Gaps = 13/217 (5%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFS-KVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
S L++ C +G +LH + S F + +NT + MY G DS +F
Sbjct: 105 SEAMGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVF 164
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D+L +NL WN I++ Y+R +A+++F + + +P T+ V
Sbjct: 165 DKLRRKNLFQWNAIVS----------AYTRNELFEDAMSIFSELISVTEHKPDNFTLPCV 214
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A ++ Q+IHG K + D+ V N LI Y KCG + A K D +D
Sbjct: 215 IKACAGLLDLGLGQIIHGMATKMDLVS-DVFVGNALIAMYGKCGLVEEAVKRVFDL-MDT 272
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
K + SW ++ G+A + ++A++ + +M GL P+
Sbjct: 273 KTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPD 309
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 88/192 (45%), Gaps = 22/192 (11%)
Query: 33 TCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVT 92
C LS LG +LH K ++V++++ DMY G + S ++FD L E+++ +
Sbjct: 420 ACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVAS 479
Query: 93 WNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEV 152
WNVII GY R EAL LF +M +P + T +L A G V
Sbjct: 480 WNVIIA----------GYGIHGRGKEALELFEKMLRLGL-KPDDFTFTGILMACSHAGLV 528
Query: 153 RNC-----QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
+ Q+++ + + + C++D + G I A +L E+ D + +
Sbjct: 529 EDGLEYFNQMLNLHNIEPKLEHY-----TCVVDMLGRAGRIDDALRLIEEMPGDPDSRI- 582
Query: 208 WTTIISGFAMHG 219
W++++S +HG
Sbjct: 583 WSSLLSSCRIHG 594
>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
Length = 723
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/292 (33%), Positives = 152/292 (52%), Gaps = 30/292 (10%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
FT+S +++ C T+ G Q+HA K QS ++ AL ++Y G ++D K F
Sbjct: 251 FTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHS 310
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
P+ ++V+W +I G V+ G +G L LF + +P E TI +L
Sbjct: 311 TPKLDVVSWTSLIVGHVQ-NGQFEG---------GLTLFHELLF-SGRKPDEFTISIMLS 359
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A V++ + IH Y K G F I + N I YAKCG I SA+ F++T +
Sbjct: 360 ACANLAAVKSGEQIHAYAIKTGIGNFTI-IQNSQICMYAKCGDIDSANMTFKETK--NPD 416
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFD 253
+VSW+ +IS A HG KEAV+ FE M+ G+ PN +G EEGL++F+
Sbjct: 417 IVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFE 476
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEE--VASGIPSQITNVVVWRT 303
M ++ + P++KH C++D+L RAGRL +AE + SG + V+WR+
Sbjct: 477 IMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEG---DPVMWRS 525
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 96/198 (48%), Gaps = 9/198 (4%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G LH K+G V V TAL D Y +G L+D++K+F +P+ N+V +N +I G ++
Sbjct: 163 GKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQ 222
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
+ D + +NEA+ LF M + +PSE T ++L A + IH
Sbjct: 223 METMADEF-----ANEAMYLFFEMQS-RGMKPSEFTFSSILKACSTIEAFECGKQIHAQI 276
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
K + D + N L++ Y+ G I K F T + ++VSWT++I G +G +
Sbjct: 277 FKYNLQS-DEFIGNALVELYSLSGSIEDGLKCFHSTP--KLDVVSWTSLIVGHVQNGQFE 333
Query: 223 EAVENFERMQKVGLKPNR 240
+ F + G KP+
Sbjct: 334 GGLTLFHELLFSGRKPDE 351
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 21/226 (9%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D FT+S + C LG +HA+ + G V + +L DMY G + + +
Sbjct: 39 LDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLV 98
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+ E + V+WN +I GY R+ ++E L L +M + + +
Sbjct: 99 FESADELDSVSWNSLIA----------GYVRIGSNDEMLRLLVKMLR-HGLNLNSYALGS 147
Query: 142 VLPAIWKN--GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
L A N + +++HG K G + D+ V L+DTYAK G + A+K+F+
Sbjct: 148 ALKACGSNFSSSIECGKMLHGCAVKLGLD-LDVVVGTALLDTYAKIGDLEDATKIFK--L 204
Query: 200 VDRKNLVSWTTIISGF-AMHGM----GKEAVENFERMQKVGLKPNR 240
+ N+V + +I+GF M M EA+ F MQ G+KP+
Sbjct: 205 MPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSE 250
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 109/240 (45%), Gaps = 33/240 (13%)
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+P+RN+V+WN +I+ GY++M +E + LF+ A + T L
Sbjct: 1 MPKRNVVSWNSLIS----------GYTQMGFYHEVMNLFKE-ARMSDLRLDKFTFSNALS 49
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
+ ++R +LIH G + ++N LID Y KCG I A +FE S D +
Sbjct: 50 VCGRTLDLRLGRLIHALITVSGLGG-PVLLTNSLIDMYCKCGRIDWARLVFE--SADELD 106
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEE----GLKFFD-----KM 255
VSW ++I+G+ G E + +M + GL N S+ +G G F KM
Sbjct: 107 SVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLN-SYALGSALKACGSNFSSSIECGKM 165
Query: 256 VEECEVL----PDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR---TGFLRL 308
+ C V D+ L+D + G LE A ++ +P NVV++ GFL++
Sbjct: 166 LHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPD--PNVVMYNAMIAGFLQM 223
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 81/196 (41%), Gaps = 12/196 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT S ++ C L+ G Q+HA K G + + + MY G + ++ F
Sbjct: 350 DEFTISIMLSACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTF 409
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E ++V+W+V+I+ ++ + EA+ LF M P+ IT L V
Sbjct: 410 KETKNPDIVSWSVMIS----------SNAQHGCAKEAVDLFELMKGSGIA-PNHITFLGV 458
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G V +K ++ S C++D + G + A D+ +
Sbjct: 459 LVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFE- 517
Query: 203 KNLVSWTTIISGFAMH 218
+ V W +++S +H
Sbjct: 518 GDPVMWRSLLSACRVH 533
>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g18485-like [Vitis vinifera]
Length = 881
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 156/292 (53%), Gaps = 27/292 (9%)
Query: 14 SHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG 73
+ S L P D FT L+ C + + G ++H + G ++ +L +Y+ G
Sbjct: 400 TDSGLDP--DWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCG 457
Query: 74 FLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE 133
+ LFD + R+LV+WNV+I G YS+ +EA+ LFR+M + + +
Sbjct: 458 KPFAAQVLFDGMEHRSLVSWNVMIAG----------YSQNGLPDEAINLFRQMLS-DGIQ 506
Query: 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASK 193
P EI I+ V A + +R + +H + K DI VS+ +ID YAK GCI + +
Sbjct: 507 PYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTE-DIFVSSSIIDMYAKGGCIGLSQR 565
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-------- 245
+F+ + K++ SW II+G+ +HG GKEA+E FE+M ++GLKP+ G
Sbjct: 566 IFD--RLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHA 623
Query: 246 ---EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
E+GL++F++M+ + P ++HY C++D+L RAGR++ A + +P
Sbjct: 624 GLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGD 675
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 113/226 (50%), Gaps = 22/226 (9%)
Query: 10 IYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY 69
I + H P D+FT +I+ C L LG +H + +K+ S V+V AL MY
Sbjct: 92 ISVTEHKP-----DNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMY 146
Query: 70 VSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC 129
G ++++ K+F+ +PERNLV+WN II G+S E+ FR M
Sbjct: 147 GKCGLVEEAVKVFEHMPERNLVSWNSIIC----------GFSENGFLQESFNAFREMLVG 196
Query: 130 EYT-EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
E + P T++ VLP ++ +HG K G N ++ V+N LID Y+KC +
Sbjct: 197 EESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNE-ELMVNNSLIDMYSKCRFL 255
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
A LF+ D+KN+VSW ++I G+A ++ F +QK+
Sbjct: 256 SEAQLLFDKN--DKKNIVSWNSMIGGYARE---EDVCRTFYLLQKM 296
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/237 (25%), Positives = 117/237 (49%), Gaps = 17/237 (7%)
Query: 4 YKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNT 63
+ +++ + S +P D T ++ C G +H + K+G + VN
Sbjct: 187 FNAFREMLVGEESFVP---DVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNN 243
Query: 64 ALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALF 123
+L DMY FL ++ LFD+ ++N+V+WN +I GY+R L
Sbjct: 244 SLIDMYSKCRFLSEAQLLFDKNDKKNIVSWN----------SMIGGYAREEDVCRTFYLL 293
Query: 124 RRMAACEYT-EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
++M + + E TIL VLP + E+++ + +HGY + G + ++ V+N I Y
Sbjct: 294 QKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNEL-VANAFIAAY 352
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+CG + S+ ++F+ +D K + SW ++ G+A + ++A++ + +M GL P+
Sbjct: 353 TRCGALCSSERVFD--LMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPD 407
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 98/203 (48%), Gaps = 14/203 (6%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFS-KVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPER 88
L++ C +G +LH + S F + +NT + MY G DS +FD+L +
Sbjct: 4 LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63
Query: 89 NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148
NL WN I++ Y+R +A+++F + + +P T+ V+ A
Sbjct: 64 NLFQWNAIVS----------AYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAG 113
Query: 149 NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSW 208
++ Q+IHG K + D+ V N LI Y KCG + A K+FE + +NLVSW
Sbjct: 114 LLDLGLGQIIHGMATKMDLVS-DVFVGNALIAMYGKCGLVEEAVKVFE--HMPERNLVSW 170
Query: 209 TTIISGFAMHGMGKEAVENFERM 231
+II GF+ +G +E+ F M
Sbjct: 171 NSIICGFSENGFLQESFNAFREM 193
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 104/216 (48%), Gaps = 14/216 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT ++ C+ S +LH + G QS+ V A Y G L S ++F
Sbjct: 306 DEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVF 365
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + + + +WN ++ GY++ + +AL L+ +M +P TI ++
Sbjct: 366 DLMDTKTVSSWNALLC----------GYAQNSDPRKALDLYLQMTD-SGLDPDWFTIGSL 414
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + + + IHG+ + G A D + L+ Y CG F+A LF+ ++
Sbjct: 415 LLACSRMKSLHYGEEIHGFALRNGL-AVDPFIGISLLSLYICCGKPFAAQVLFD--GMEH 471
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
++LVSW +I+G++ +G+ EA+ F +M G++P
Sbjct: 472 RSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQP 507
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 88/189 (46%), Gaps = 16/189 (8%)
Query: 33 TCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVT 92
C LS LG +LH K ++V++++ DMY G + S ++FD L E+++ +
Sbjct: 518 ACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVAS 577
Query: 93 WNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEV 152
WNVII GY R EAL LF +M +P + T +L A G V
Sbjct: 578 WNVIIA----------GYGIHGRGKEALELFEKMLRLGL-KPDDFTFTGILMACSHAGLV 626
Query: 153 RNCQLIHGYGEKRGFNAFDIHVSN--CLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
+ + + + + + + + C++D + G I A +L E+ D + + W++
Sbjct: 627 EDG--LEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRI-WSS 683
Query: 211 IISGFAMHG 219
++S +HG
Sbjct: 684 LLSSCRIHG 692
>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
[Vitis vinifera]
gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
Length = 687
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/310 (30%), Positives = 156/310 (50%), Gaps = 40/310 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S T S ++ C L G ++H + G +V+V++AL +MY S ++ + +F
Sbjct: 178 NSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVF 237
Query: 83 DELPERNLVTWNVIIT-----------------------GL--VKWTGIIDGYSRMNRSN 117
D + R+ V+WNV+IT GL W +I G + R+
Sbjct: 238 DSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTE 297
Query: 118 EALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
+AL + RM + +P++ITI +VLPA +R + IHGY + F D+ +
Sbjct: 298 KALEVLSRMQNSGF-KPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQ-DLTTTTA 355
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
L+ YAKCG + + ++F + + +++ VSW T+I +MHG G+EA+ F M G++
Sbjct: 356 LVFMYAKCGDLELSRRVF--SMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVR 413
Query: 238 PNR-----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
PN R+ +EGL FD M + V PD H+ C++D+L RAGRLE+A E
Sbjct: 414 PNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYE 473
Query: 287 VASGIPSQIT 296
+P + T
Sbjct: 474 FIKKMPIEPT 483
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 13/172 (7%)
Query: 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA 127
+Y + G L+ + LFD++P+ +L TW ++I+ L K RS EA+ +
Sbjct: 20 VYSNSGDLQRARHLFDKIPQPDLPTWTILISALTK----------HGRSLEAIQYYNDFR 69
Query: 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC 187
EP ++ +L+V A +V N + +H + GF + D+ + N LID Y KC C
Sbjct: 70 HKNCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCS-DVLLGNALIDMYGKCRC 128
Query: 188 IFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
A +FE ++++SWT++ S + G+ +EA+ F +M G +PN
Sbjct: 129 SEGARLVFEGMPF--RDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPN 178
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 113/239 (47%), Gaps = 15/239 (6%)
Query: 32 RTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLV 91
+ C +L ++H + GF S V + AL DMY + + +F+ +P R+++
Sbjct: 86 KACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVI 145
Query: 92 TWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGE 151
+ WT + Y EAL FR+M P+ +T+ ++LPA +
Sbjct: 146 S----------WTSMASCYVNCGLLREALGAFRKMGL-NGERPNSVTVSSILPACTDLKD 194
Query: 152 VRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTI 211
+++ + +HG+ + G ++ VS+ L++ YA C I A +F+ S+ R++ VSW +
Sbjct: 195 LKSGREVHGFVVRNGMGG-NVFVSSALVNMYASCLSIRQAQLVFD--SMSRRDTVSWNVL 251
Query: 212 ISGFAMHGMGKEAVENFERMQKVGLKPN-RSWRIGEEGLKFFDKMVEECEVLPDIKHYG 269
I+ + ++ ++ + F RM G+ N SW G + + EVL +++ G
Sbjct: 252 ITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSG 310
>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/303 (30%), Positives = 156/303 (51%), Gaps = 40/303 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ L ++C L G QLH +K+GF S Y+ L +MY + G L + K+F
Sbjct: 77 DRFTFPSLFKSCGVLCE---GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVF 133
Query: 83 DELPERNLVTWNVII----------------------TGLVKWTGIIDGYSRMNRSNEAL 120
D++ +++V+W +I + L W +I+G+ + EAL
Sbjct: 134 DKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEAL 193
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
+LF M + ++T+ ++L A G + + +H Y EK D+ + L+D
Sbjct: 194 SLFNEMQL-SGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEV-DVALGTALVD 251
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
YAKCG I SA ++F++ + K++++WT +I G AM G G +A+E F MQ +KP+
Sbjct: 252 MYAKCGSIESAMRVFQE--MPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDA 309
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
+G EG+ +F+ M + + P I+HYGC++D+L RAGR+ +AE++
Sbjct: 310 ITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQ 369
Query: 290 GIP 292
+P
Sbjct: 370 NMP 372
>gi|356564808|ref|XP_003550640.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37320-like [Glycine max]
Length = 501
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 164/327 (50%), Gaps = 27/327 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D F S + +C + G Q H + GF + VYV ++L +Y FL D+ ++F
Sbjct: 106 DVFFLSQAVSSCGSKRDLWGGIQYHCLAITTGFVASVYVGSSLISLYSRCAFLGDACRVF 165
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+P RN+V+ WT II G+++ + L LF++M + P+ T ++
Sbjct: 166 EEMPVRNVVS----------WTAIIAGFAQEWHVDMCLELFQQMRGSDL-RPNYFTYTSL 214
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A +G + + + H + GF+++ +H+ N LI Y+KCG I A +FE+ +
Sbjct: 215 LSACMGSGALGHGRCAHCQIIRMGFHSY-LHIENALISMYSKCGAIDDALHIFEN--MVS 271
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+++V+W T+ISG+A HG+ +EA+ FE M K G+ P+ +G +EG +
Sbjct: 272 RDVVTWNTMISGYAQHGLAQEAINLFEEMIKQGVNPDAVTYLGVLSSCRHGGLVKEGQVY 331
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLIN 311
F+ MVE V P + HY C++D+L RAG L +A + +P N VVW + ++
Sbjct: 332 FNSMVEH-GVQPGLDHYSCIVDLLGRAGLLLEARDFIQNMPI-FPNAVVWGSLLSSSRLH 389
Query: 312 SYFFSPITLNSQRLFFFPAALYALTQI 338
I RL P L Q+
Sbjct: 390 GSVPIGIEAAENRLLMEPGCSATLQQL 416
>gi|449477795|ref|XP_004155125.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 158/291 (54%), Gaps = 27/291 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FT+SF+++ C + ++H + G+ + V V T L Y ++G + + ++F
Sbjct: 104 DTFTFSFVLKACERIKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGLVCIARQVF 163
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++P R+LV WN +I+ +S+ EAL + +M + E + T++ +
Sbjct: 164 DKMPARDLVAWNAMIS----------CFSQQGLHQEALQTYNQMRS-ENVDVDGFTLVGL 212
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ + G + +H + + G + ++V N LID YAKCG + A +F+ + R
Sbjct: 213 ISSCAHLGALNIGVQMHRFARENGLDQ-SLYVGNALIDMYAKCGSLDQAILIFD--RMQR 269
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
K++ +W ++I G+ +HG G EA+ F++M + ++PN +G +EG+K+
Sbjct: 270 KDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCSHQGLVQEGVKY 329
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
F+ M + + P++KHYGCL+D+ RAG+L++A E+ S S + V+WR
Sbjct: 330 FNLMSSKFRLKPEVKHYGCLVDLYGRAGKLDKALEIVSN--SSHNDSVLWR 378
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 87/207 (42%), Gaps = 35/207 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT LI +C L N+G Q+H + G +YV AL DMY G L + +F
Sbjct: 205 DGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILIF 264
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + +++ TWN +I GY R +EA+ F++M +P+ +T L +
Sbjct: 265 DRMQRKDIFTWNSMIV----------GYGVHGRGSEAIYCFQQMLEAR-IQPNPVTFLGL 313
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN-----------CLIDTYAKCGCIFSA 191
L G V + G F++ S CL+D Y + G + A
Sbjct: 314 LCGCSHQGLV-----------QEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKLDKA 362
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMH 218
++ ++S + V W ++ +H
Sbjct: 363 LEIVSNSS--HNDSVLWRILLGSCKIH 387
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
W II G+++ + +A+ + +M ++ P T VL A + R C+ +HG
Sbjct: 72 WNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKEVHGSV 131
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
+ G++A D+ V L+ Y+ G + A ++F+ ++LV+W +IS F+ G+ +
Sbjct: 132 IRCGYDA-DVIVCTNLVKCYSAMGLVCIARQVFDKMPA--RDLVAWNAMISCFSQQGLHQ 188
Query: 223 EAVENFERMQ 232
EA++ + +M+
Sbjct: 189 EALQTYNQMR 198
>gi|225456719|ref|XP_002268090.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
chloroplastic-like [Vitis vinifera]
Length = 529
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/311 (31%), Positives = 159/311 (51%), Gaps = 27/311 (8%)
Query: 4 YKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNT 63
YK + Y S + P + T ++ C +L G +H +K + V+V+
Sbjct: 162 YKVREVSYDMVRSNVKP--NGVTAVSILSVCSSLRALREGKAVHGYVTKNLIEFDVFVHN 219
Query: 64 ALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALF 123
AL +Y G ++D+ ++F +P RN+V+W T +I+GYS N NEAL F
Sbjct: 220 ALIVVYSKCGSIRDAVQVFQLMPMRNVVSW----------TSLINGYSDNNCPNEALGFF 269
Query: 124 RRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183
++M A E P EIT+L V+ K + I Y K G ++N L+D +A
Sbjct: 270 KQMEA-ENIRPDEITVLGVVCMCSKLRSFELGEWISQYVVKIGLLKESPAIANALMDMHA 328
Query: 184 KCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN---- 239
KCG I A ++F+ ++ K +VSWT +I G AMHG G A+ F +MQ+ G KP+
Sbjct: 329 KCGNINRACQIFD--GMEEKTIVSWTIMIQGLAMHGHGLSALVRFCQMQREGFKPDSLVF 386
Query: 240 -------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+ +EG + F M + + P ++HYGC++DIL RAG +++A + +P
Sbjct: 387 LSLLSACSHAGLVDEGWRCFSSMEADYHISPWMEHYGCMVDILCRAGLVDEAFKFVQNMP 446
Query: 293 SQITNVVVWRT 303
+ +++VWRT
Sbjct: 447 IK-PDMIVWRT 456
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/348 (24%), Positives = 164/348 (47%), Gaps = 40/348 (11%)
Query: 8 QQIYIHSHSPLPPL-FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALG 66
+ I +++H L D++T F+I+ C G Q+H K+GF+ V + TAL
Sbjct: 62 EAILVYNHVRKKGLKVDTYTLVFVIKACGLRPVILEGEQIHGQIFKLGFEFEVIIQTALL 121
Query: 67 DMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM 126
++Y ++FDE+P+R+LV WN +I Y+ N + + M
Sbjct: 122 NLYGLFDEDCGLQQIFDEMPQRDLVMWNALIA----------AYAHGNCPYKVREVSYDM 171
Query: 127 AACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG 186
+P+ +T +++L +R + +HGY K FD+ V N LI Y+KCG
Sbjct: 172 VRSN-VKPNGVTAVSILSVCSSLRALREGKAVHGYVTKN-LIEFDVFVHNALIVVYSKCG 229
Query: 187 CIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN------- 239
I A ++F+ + +N+VSWT++I+G++ + EA+ F++M+ ++P+
Sbjct: 230 SIRDAVQVFQLMPM--RNVVSWTSLINGYSDNNCPNEALGFFKQMEAENIRPDEITVLGV 287
Query: 240 -------RSWRIGEEGLKFFDK--MVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
RS+ +GE ++ K +++E + + L+D+ + G + +A ++ G
Sbjct: 288 VCMCSKLRSFELGEWISQYVVKIGLLKESPAIAN-----ALMDMHAKCGNINRACQIFDG 342
Query: 291 IPSQITNVVVWRTGFLRLLINSYFFSPIT--LNSQRLFFFPAALYALT 336
+ + +V W L ++ + S + QR F P +L L+
Sbjct: 343 MEEK--TIVSWTIMIQGLAMHGHGLSALVRFCQMQREGFKPDSLVFLS 388
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 95/226 (42%), Gaps = 31/226 (13%)
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
W II GY N EA+ ++ + + + T++ V+ A + + IHG
Sbjct: 47 WNTIIRGYLEGNDPEEAILVYNHVRK-KGLKVDTYTLVFVIKACGLRPVILEGEQIHGQI 105
Query: 163 EKRGFNAFDIHVSNCLIDTYA----KCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218
K GF F++ + L++ Y CG ++F++ + +++LV W +I+ +A
Sbjct: 106 FKLGFE-FEVIIQTALLNLYGLFDEDCG----LQQIFDE--MPQRDLVMWNALIAAYAHG 158
Query: 219 GMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKFFDKMVEECEVLPDIKH 267
+ E M + +KPN S R EG K V + + D+
Sbjct: 159 NCPYKVREVSYDMVRSNVKPNGVTAVSILSVCSSLRALREG-KAVHGYVTKNLIEFDVFV 217
Query: 268 YGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSY 313
+ LI + + G + A +V +P + NVV W + LIN Y
Sbjct: 218 HNALIVVYSKCGSIRDAVQVFQLMP--MRNVVSWTS-----LINGY 256
>gi|359481504|ref|XP_002274656.2| PREDICTED: pentatricopeptide repeat-containing protein At5g42450,
mitochondrial-like [Vitis vinifera]
Length = 538
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 93/302 (30%), Positives = 153/302 (50%), Gaps = 36/302 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F++ +I + L N G QLHA K+G +S+V+V +A+ D Y L + ++ K F
Sbjct: 110 NQFSFGTVIPSSTALQDLNSGRQLHACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKAF 169
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
++ E N+V++ +I G +V W +I GYS+M + EA+
Sbjct: 170 EDTHEPNVVSYTTLIRGYLKKERFDDALALFRKMPERNVVSWNAMISGYSQMGYNEEAVN 229
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M E T P+E T + A+ + + HG K FD+ + N L+
Sbjct: 230 LFVVMLR-EGTLPNERTFPCAISAVANIAALGMGRSFHGSAVKF-LGKFDVFIGNSLVSF 287
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG + + +F ++ +KN+VSW +I G+A HG G EA+ FE+MQ GL+PN
Sbjct: 288 YAKCGSMEESLLVF--NTLPKKNIVSWNALICGYANHGRGMEAIYFFEKMQDTGLRPNSV 345
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+G ++G +F+K E L +H+ C++D+L R+GR ++AE+
Sbjct: 346 TLLGLLLACNHSGLVDKGYSYFNKARVEEPGLLTPEHHACMVDLLSRSGRFKEAEKFLHE 405
Query: 291 IP 292
+P
Sbjct: 406 LP 407
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 88/200 (44%), Gaps = 41/200 (20%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y + L D+ KLFDE+P W+V V T I ++R + EA+ F RM A
Sbjct: 55 YSASKALWDACKLFDEVP-----NWDV-----VSATATIGCFARYHHHEEAIYFFSRMLA 104
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
+P++ + V+P+ ++ + + +H K G + ++ V + ++D YAK I
Sbjct: 105 LN-IKPNQFSFGTVIPSSTALQDLNSGRQLHACAIKMGLES-NVFVGSAVVDFYAKLTSI 162
Query: 189 FSASKLFEDT-----------------------------SVDRKNLVSWTTIISGFAMHG 219
A K FEDT + +N+VSW +ISG++ G
Sbjct: 163 NEAQKAFEDTHEPNVVSYTTLIRGYLKKERFDDALALFRKMPERNVVSWNAMISGYSQMG 222
Query: 220 MGKEAVENFERMQKVGLKPN 239
+EAV F M + G PN
Sbjct: 223 YNEEAVNLFVVMLREGTLPN 242
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
+++ Q IHG K G + + + +Y+ ++ A KLF++ V ++VS T
Sbjct: 28 QLKESQRIHGRAIKLGTTILEPDI----VCSYSASKALWDACKLFDE--VPNWDVVSATA 81
Query: 211 IISGFAMHGMGKEAVENFERMQKVGLKPNR 240
I FA + +EA+ F RM + +KPN+
Sbjct: 82 TIGCFARYHHHEEAIYFFSRMLALNIKPNQ 111
>gi|449446195|ref|XP_004140857.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Cucumis sativus]
Length = 593
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 159/332 (47%), Gaps = 45/332 (13%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
+++++Q I + + DS T I LS +G L + G +Y+
Sbjct: 201 LFREMQAINVRA--------DSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLG 252
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK-------------------- 102
L DMY G + + ++F ++ E+N+V+WN +I G K
Sbjct: 253 NTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVI 312
Query: 103 -WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
WT +I GYS + EA+ LF+ M +P EIT+ L A G + + +H Y
Sbjct: 313 SWTSMIIGYSLAKQHAEAVKLFQEMMV-SMVKPDEITVATALSACAHLGSLDAGEAVHDY 371
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
K + D+ V N LID Y KCG + A ++F D ++ VSWT+IISG A++G
Sbjct: 372 IRKHDIKS-DVFVGNSLIDMYCKCGVVEKALQVFNDMKT--RDSVSWTSIISGLAVNGFA 428
Query: 222 KEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGC 270
+ A+ F++M K G+ P +G ++G++ F M + P++KHYGC
Sbjct: 429 ESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGC 488
Query: 271 LIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
++D+L R+G L+ A +P + +VV+WR
Sbjct: 489 VVDLLCRSGYLDMAYNFIKKMPI-VPDVVIWR 519
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 156/346 (45%), Gaps = 65/346 (18%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
T+ FL ++C +S G + K+GF+S+++V+ AL MYV G L + K+FD
Sbjct: 114 LTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESYLFVSNALIHMYVCFGELAMAQKVFDG 173
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ ER++V+WN II GY + NR + L LFR M A S +T++ +
Sbjct: 174 MLERDVVSWNSIIC----------GYYQFNRFKKVLDLFREMQAINVRADS-VTMMKAIS 222
Query: 145 AI-----WKNGE---------------VRNCQLIHGYGEKRGFNAF-----------DIH 173
A W+ G+ LI YG +RG F +I
Sbjct: 223 ATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYG-RRGMIDFAGRVFYQMKEKNIV 281
Query: 174 VSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
N +I YAK G + +A KLF + + ++++SWT++I G+++ EAV+ F+ M
Sbjct: 282 SWNAMIMGYAKVGNLVAAKKLFNE--MPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMV 339
Query: 234 VGLKPNR--------------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
+KP+ S GE + K ++ D+ LID+ + G
Sbjct: 340 SMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKH----DIKSDVFVGNSLIDMYCKCG 395
Query: 280 RLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRL 325
+E+A +V + + ++ + V W + L +N + S + + Q L
Sbjct: 396 VVEKALQVFNDMKTR--DSVSWTSIISGLAVNGFAESALNVFDQML 439
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 109/231 (47%), Gaps = 24/231 (10%)
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
LP+ + V + L+ W +I G S+ +R N+A+ + M + + S +T + +
Sbjct: 63 LPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYY-KGIQGSHLTFIFLFK 121
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
+ + +VR Q++ + K GF ++ + VSN LI Y G + A K+F+ + ++
Sbjct: 122 SCARVSDVRQGQMVRVHSMKLGFESY-LFVSNALIHMYVCFGELAMAQKVFD--GMLERD 178
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN--------------RSWRIGEEGLK 250
+VSW +II G+ K+ ++ F MQ + ++ + W +G+ +K
Sbjct: 179 VVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVK 238
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ D E V+ D+ LID+ R G ++ A V + + N+V W
Sbjct: 239 YID----EHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEK--NIVSW 283
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 12/197 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + + C L + G +H K +S V+V +L DMY G ++ + ++F
Sbjct: 345 DEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVF 404
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+++ R+ V+W II+GL ++G++ AL +F +M E P+ T + V
Sbjct: 405 NDMKTRDSVSWTSIISGLA-----VNGFAE-----SALNVFDQMLK-EGICPTHGTFVGV 453
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G V E A ++ C++D + G + A + +
Sbjct: 454 LLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPI-V 512
Query: 203 KNLVSWTTIISGFAMHG 219
++V W ++S +HG
Sbjct: 513 PDVVIWRILLSACKLHG 529
>gi|357146237|ref|XP_003573921.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 531
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/304 (31%), Positives = 146/304 (48%), Gaps = 41/304 (13%)
Query: 33 TCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVT 92
+C P G +HA G + V+V+T L +Y G + + ++FD +P ++ +
Sbjct: 127 SCTARRSP--GRMVHAFIVACGIEPDVFVSTELIRVYGERGEMTVARRVFDSMPTKSTIA 184
Query: 93 WNVII---------------------TGLVKWTGIIDGYSRMNRSNEALALFRRM---AA 128
WN ++ +V W +I GY + R EAL LFR+M ++
Sbjct: 185 WNTMVHQYVRNKDIEAAYRLFLAMPRRDVVSWNTVIAGYCLVGRCKEALGLFRQMVSPSS 244
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
C P+ T+ VL A G + +H Y +K N + CLID YAKCG I
Sbjct: 245 CT-VHPNGPTMSTVLSACAGAGCLETGIWVHLYIDKNQMNDNGT-LDRCLIDMYAKCGSI 302
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG--- 245
A ++FE +++L SWTT+I G AMHG + + F MQ G+ P+ +G
Sbjct: 303 DKALQVFEKAP-GKRDLYSWTTVICGLAMHGRANDVLRMFSMMQDSGMCPDDVTFVGVLN 361
Query: 246 --------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITN 297
+EGL F M E+ + P I+HYGC+ID+L R GRL +A + +P + N
Sbjct: 362 ACAHGGLVDEGLHHFYSMQEKYRITPKIEHYGCMIDLLGRVGRLPEAYRMIQTMPMK-PN 420
Query: 298 VVVW 301
+V+W
Sbjct: 421 MVIW 424
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 97/224 (43%), Gaps = 48/224 (21%)
Query: 43 GTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV 101
+ +H + K G + ++ TAL Y +LG + LFDE+P ++LV
Sbjct: 29 ASGIHCLLFKAGLLHAGAHLPTALLSAYGALGRSGHARDLFDEMPNQSLVA--------- 79
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVR-------- 153
T + ++ ++ +AL LF+ M A + P + + VL A G
Sbjct: 80 -RTAMARAHAVSGQAAQALDLFQDMIADGFM-PDNVALAVVLAACHGAGSCTARRSPGRM 137
Query: 154 ----------------NCQLIHGYGE-------KRGFNAFDIHVS---NCLIDTYAKCGC 187
+ +LI YGE +R F++ + N ++ Y +
Sbjct: 138 VHAFIVACGIEPDVFVSTELIRVYGERGEMTVARRVFDSMPTKSTIAWNTMVHQYVRNKD 197
Query: 188 IFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
I +A +LF ++ R+++VSW T+I+G+ + G KEA+ F +M
Sbjct: 198 IEAAYRLF--LAMPRRDVVSWNTVIAGYCLVGRCKEALGLFRQM 239
>gi|356499342|ref|XP_003518500.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g29230-like [Glycine max]
Length = 446
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/265 (30%), Positives = 141/265 (53%), Gaps = 36/265 (13%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTGII 107
Y+ LG + + +LFD +P+ ++++WN +++G + W G+I
Sbjct: 66 YIELGDMVAARELFDRMPDCDVMSWNTVLSGYANNGEVELFVKVFEEMPARNVYSWNGLI 125
Query: 108 DGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF 167
GY R EAL F+RM P++ T++AVL A + G++ + +H Y + G+
Sbjct: 126 GGYVRNGLFKEALECFKRMLVDGVVVPNDYTVVAVLSACSRLGDLEIGKWVHVYADSIGY 185
Query: 168 NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVEN 227
++ V N LID YAKCG I A +F+ +D K++++W TII+ AMH +A+
Sbjct: 186 KG-NLFVGNALIDMYAKCGVIEKALDVFD--GLDVKDIITWNTIINSLAMHXHAADALSL 242
Query: 228 FERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILE 276
FE M++ G +P+ +G G F MV++ ++P I+HYGC++D+L
Sbjct: 243 FEGMKRAGERPDGVTFVGILSACTHMGLVRNGFLHFQSMVDDYLIVPQIEHYGCMVDLLG 302
Query: 277 RAGRLEQAEEVASGIPSQITNVVVW 301
RAG + QA ++ +P + +VV+W
Sbjct: 303 RAGLINQAVDIVRKMPME-PDVVIW 326
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 14/217 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ +T ++ C L +G +H +G++ +++V AL DMY G ++ + +F
Sbjct: 153 NDYTVVAVLSACSRLGDLEIGKWVHVYADSIGYKGNLFVGNALIDMYAKCGVIEKALDVF 212
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D L ++++TWN II L + + +AL+LF M P +T + +
Sbjct: 213 DGLDVKDIITWNTIINSL----------AMHXHAADALSLFEGMKRAG-ERPDGVTFVGI 261
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G VRN L I C++D + G I A + ++
Sbjct: 262 LSACTHMGLVRNGFLHFQSMVDDYLIVPQIEHYGCMVDLLGRAGLINQAVDIVRKMPME- 320
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
++V W ++ + + A +R+ + L+PN
Sbjct: 321 PDVVIWAALLGACRXYKNVEMAELALQRL--IELEPN 355
>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
Length = 582
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 133/244 (54%), Gaps = 26/244 (10%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y G L D+ LFDE+P RN V+W + +++GY + EAL +F RM A
Sbjct: 153 YARAGRLADARALFDEMPARNAVSW----------SAMVNGYVQAGDGREALRIFARMQA 202
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
E P + ++ VL A ++G + + +HGY + G ++ L+D Y+KCG +
Sbjct: 203 -EDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIK-INLFFGTALVDMYSKCGEV 260
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG--- 245
A +FE + KN+++WTT+I G AMHG G EAV F +M+ G++P+ IG
Sbjct: 261 QLAMDVFE--RMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLC 318
Query: 246 --------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITN 297
++G + FD MV + + P I+HYGC++D+L R G L +A+E+ +P + +
Sbjct: 319 ACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPME-PD 377
Query: 298 VVVW 301
++W
Sbjct: 378 ALIW 381
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 28/219 (12%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
++ C G +H G + +++ TAL DMY G ++ + +F+ + +N
Sbjct: 215 VLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKN 274
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
++ W +I GL + R +EA+ LF +M + P +I + VL A
Sbjct: 275 VLAWTTMIKGL----------AMHGRGSEAVMLFAQMESSG-IRPDDIAFIGVLCACTHA 323
Query: 150 GEVRNCQ-----LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
G V + ++ YG K + C++D A+ G ++ A ++ + ++
Sbjct: 324 GLVDKGRELFDSMVRKYGIKPKIEHY-----GCMVDLLARNGFLYEAKEMIQKMPMEPDA 378
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQK--VGLKPNRS 241
L+ W +++G H + VE E + K + L+P++S
Sbjct: 379 LI-WGALMAGCRFH----KNVEFAEYVAKHWILLEPDKS 412
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 16/170 (9%)
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
R A D N LI YA+ G + A LF++ +N VSW+ +++G+ G G+EA
Sbjct: 136 RTAAAVDASTFNTLITAYARAGRLADARALFDEMPA--RNAVSWSAMVNGYVQAGDGREA 193
Query: 225 VENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLID 273
+ F RMQ ++P+ + +G E+G K+ ++ + ++ L+D
Sbjct: 194 LRIFARMQAEDVRPDDTVLVGVLAACAQHGALEQG-KWVHGYLKAHGIKINLFFGTALVD 252
Query: 274 ILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQ 323
+ + G ++ A +V + Q NV+ W T L ++ + L +Q
Sbjct: 253 MYSKCGEVQLAMDVFERM--QYKNVLAWTTMIKGLAMHGRGSEAVMLFAQ 300
>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
Length = 649
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 145/294 (49%), Gaps = 37/294 (12%)
Query: 42 LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGL- 100
LG Q+H G + V AL DMY ++ + KLFD + R++V+W +++GL
Sbjct: 163 LGMQVHGRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLT 222
Query: 101 --------------------VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
V WT +IDGY + R EAL +FR M C E T++
Sbjct: 223 RLGRVDEARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQ-CSNVSADEFTMV 281
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+V+ A + G + + + Y ++G D V N LID Y+KCG I A +F+D +
Sbjct: 282 SVITACAQLGALEMGEWVRVYMSRQGIK-MDAFVGNALIDMYSKCGSIERALDVFKD--M 338
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
++ +WT II G A++G G+EA+E F RM V P+ IG ++G
Sbjct: 339 HHRDKFTWTAIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGR 398
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+FF M E + P++ HYGC+ID+ RAG++ +A + +P N +W T
Sbjct: 399 EFFLSMRETYNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMP-MTPNSTIWGT 451
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 97/210 (46%), Gaps = 15/210 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++T+ L++ S +HA K G + +V T+L Y + G + L
Sbjct: 42 DAYTFPPLLKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALL 101
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E V WN +I+ G++R R EA F MA P+ +T ++V
Sbjct: 102 SERERDTPVVWNALIS----------GHNRCRRFGEACCSFVDMARAG-AAPTPVTYVSV 150
Query: 143 LPAIWK-NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A K G+V +HG G D+ V N L+D YA+C + SA KLF+ V
Sbjct: 151 LSACGKGTGDVLLGMQVHGRVVGSGVLP-DLRVENALVDMYAECADMESAWKLFDGMQV- 208
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERM 231
+++VSWT+++SG G EA + F RM
Sbjct: 209 -RSVVSWTSLLSGLTRLGRVDEARDLFGRM 237
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 14/198 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT +I C L +G + S+ G + +V AL DMY G ++ + +F
Sbjct: 276 DEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVF 335
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++ R+ TW II GL ++GY EA+ +F RM T P E+T + V
Sbjct: 336 KDMHHRDKFTWTAIILGLA-----VNGY-----GEEAIEMFHRMIGVSET-PDEVTFIGV 384
Query: 143 LPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G V + + E +H C+ID + + G I A + +
Sbjct: 385 LTACTHAGLVDKGREFFLSMRETYNIAPNVVHY-GCIIDLFGRAGKITEALDAIDQMPMT 443
Query: 202 RKNLVSWTTIISGFAMHG 219
N W T+++ +HG
Sbjct: 444 -PNSTIWGTLLAACRVHG 460
>gi|225424875|ref|XP_002269101.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Vitis vinifera]
Length = 607
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 158/296 (53%), Gaps = 31/296 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ F+++ C L + G Q+HA K+GF S VY+N +L Y + L + +F
Sbjct: 127 DKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVF 186
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + ER+LV+WNV +ID + R + AL LF M ++ EP TI ++
Sbjct: 187 DRMSERSLVSWNV----------VIDAFVRFGEFDAALNLFGEMQ--KFFEPDGYTIQSI 234
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNA---FDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
A G + H + K+ F+A D+ ++ L+D Y KCG + A +LF
Sbjct: 235 ANACAGMGSLSLGMWAHVFLLKK-FDADRVNDVLLNTSLVDMYCKCGSLELALQLFH--R 291
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNRSWRIG-----------EE 247
+ ++++ SW ++I GF+ HG A+E F M + L PN +G E
Sbjct: 292 MPKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSE 351
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
G ++FD MV E ++ P+++HYGCL+D+L RAG +++A +V S +P + ++V+WR+
Sbjct: 352 GRRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMR-PDLVIWRS 406
>gi|225452922|ref|XP_002278886.1| PREDICTED: pentatricopeptide repeat-containing protein At3g29230
[Vitis vinifera]
Length = 594
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 111/409 (27%), Positives = 180/409 (44%), Gaps = 111/409 (27%)
Query: 2 LVYKQLQQIYIHSHSPLPPL------------FDSFTYSFLIRTCVTLSYPNLGTQLHAV 49
L+Y L + ++ + PL D+FTY FL++ C + + +HA
Sbjct: 81 LLYNTLIRAHVRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKVWVRVVEMIHAQ 140
Query: 50 FSKVGFQSHVYVNTALGDMY---------------------------------VSLGFLK 76
K+GF ++V +L D Y V +G L
Sbjct: 141 VEKMGFCLDIFVPNSLIDSYFKCGLDGVAAARKVFEVMAERDTVSWNSMIGGLVKVGELG 200
Query: 77 DSSKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNR 115
++ +LFDE+PER+ V+WN I+ G VK W+ ++ GYS+
Sbjct: 201 EARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPARNVVSWSTMVLGYSKAGD 260
Query: 116 SNEALALFRRM-----------------------AACEYTEPSEI-------TILAVLPA 145
+ A LF +M A Y + E T++++L A
Sbjct: 261 MDMARILFDKMPVKNLVPWTIMISGYAEKGLAKDAINLYNQMEEAGLKFDDGTVISILSA 320
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
+G + + +H E+ F VSN LID YAKCG + +A +F + RK++
Sbjct: 321 CAVSGLLGLGKRVHASIERTRFKC-STPVSNALIDMYAKCGSLENALSIFH--GMVRKDV 377
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDK 254
VSW II G AMHG G++A++ F RM+ G P++ +G +EGL +F
Sbjct: 378 VSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVTFVGVLCACTHAGFVDEGLHYFHA 437
Query: 255 MVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
M + V P+++HYGC++D+L R GRL++A + +P + N ++W T
Sbjct: 438 MERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLE-PNAIIWGT 485
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 91/213 (42%), Gaps = 14/213 (6%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD T ++ C LG ++HA + F+ V+ AL DMY G L+++ +
Sbjct: 309 FDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSI 368
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F + +++V+WN II GL + +AL LF RM + P ++T +
Sbjct: 369 FHGMVRKDVVSWNAIIQGL----------AMHGHGEKALQLFSRMKGEGFV-PDKVTFVG 417
Query: 142 VLPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
VL A G V H G ++ C++D + G + A +L +
Sbjct: 418 VLCACTHAGFVDEGLHYFHAMERDYGVPP-EVEHYGCMVDLLGRGGRLKEAFRLVHSMPL 476
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
+ N + W T++ MH A E F+R+ K
Sbjct: 477 E-PNAIIWGTLLGACRMHSATGLAEEVFDRLVK 508
>gi|77554579|gb|ABA97375.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 794
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 156/301 (51%), Gaps = 35/301 (11%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P D+ + SF ++ S + QLHA+ ++G + V + T L D Y G L +
Sbjct: 107 PRPDALSLSFALKASARCSDAHTTVQLHALVLRLGVAADVRLLTTLLDSYAKCGDLASAR 166
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC-----EYTEP 134
K+FDE+ R++ TWN ++ GL + T N ALALF R+A EP
Sbjct: 167 KVFDEMTVRDVATWNSLLAGLAQGT----------EPNLALALFHRLANSFQELPSREEP 216
Query: 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
+E+TI+A L A + G +++ +H + ++ G + ++ V N LID Y+KCG + A +
Sbjct: 217 NEVTIVAALSACAQIGLLKDGMYVHEFAKRFGLDR-NVRVCNSLIDMYSKCGSLSRALDV 275
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP------------NRSW 242
F + + LVS+ I +MHG G +A+ F+ M ++P N S
Sbjct: 276 FHSIKPEDQTLVSYNAAIQAHSMHGHGGDALRLFDEM-PTRIEPDGVTYLAVLCGCNHSG 334
Query: 243 RIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
+ ++GL+ F+ M V P++KHYG ++D+L RAGRL +A + +P ++V+W+
Sbjct: 335 LV-DDGLRVFNSM----RVAPNMKHYGTIVDLLGRAGRLTEAYDTVISMPFP-ADIVLWQ 388
Query: 303 T 303
T
Sbjct: 389 T 389
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 82/213 (38%), Gaps = 31/213 (14%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL-PERN 89
+ C + G +H + G +V V +L DMY G L + +F + PE
Sbjct: 225 LSACAQIGLLKDGMYVHEFAKRFGLDRNVRVCNSLIDMYSKCGSLSRALDVFHSIKPEDQ 284
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
LV + I +S +AL LF M EP +T LAVL +
Sbjct: 285 T---------LVSYNAAIQAHSMHGHGGDALRLFDEMPT--RIEPDGVTYLAVLCGCNHS 333
Query: 150 GEVRNCQLIHGYGEKRGFNAFDIHVS----NCLIDTYAKCGCIFSASKLFEDTSVDR--- 202
G V + R FN+ + + ++D + G + A DT +
Sbjct: 334 GLVDDGL--------RVFNSMRVAPNMKHYGTIVDLLGRAGRLTEAY----DTVISMPFP 381
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
++V W T++ MHG+ + A ++ ++G
Sbjct: 382 ADIVLWQTLLGAAKMHGVVELAELAANKLAELG 414
>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
Length = 846
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 151/293 (51%), Gaps = 27/293 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY-VNTALGDMYVSLGFLKDSSKL 81
D +TY + G +H + K G V VN A+ D Y GFL+D K+
Sbjct: 370 DLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKV 429
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + ER++V+W ++T YS+ + EALA F M E P++ T +
Sbjct: 430 FDRMEERDIVSWTTLVTA----------YSQSSLGEEALATFCLMRE-EGFAPNQFTFSS 478
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL + + + +HG K G + + + + LID YAKCG I A K+F+ S
Sbjct: 479 VLISCASLCFLEYGRQVHGLLCKAGLDT-EKCIESALIDMYAKCGSITEAGKVFDKIS-- 535
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLK 250
++VSWT IISG+A HG+ ++A++ F RM+ G+K N + EEGL
Sbjct: 536 NPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLF 595
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+F +M + V+P+++HY C+ID+L R GRL+ A E +P + N +VW+T
Sbjct: 596 YFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPME-PNEMVWQT 647
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 115/221 (52%), Gaps = 16/221 (7%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D F YS +I++C+ L LG +HA GF +H++V+T+L +MY LG ++DS
Sbjct: 164 LPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYW 223
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM--AACEYTEPSEIT 138
+F+ + E N V+WN +I+G +G EA LF RM AC P+ T
Sbjct: 224 VFNMMTEHNQVSWNAMISGCTS-----NGLHL-----EAFDLFVRMKNGAC---TPNMYT 270
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+++V A+ K +V + + + G ++ V LID Y+KCG + A +F+
Sbjct: 271 LVSVSKAVGKLVDVNMGKEVQNCASELGIEG-NVLVGTALIDMYSKCGSLHDARSVFDTN 329
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
++ W +ISG++ G +EA+E + +M + G+ +
Sbjct: 330 FINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSD 370
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 95/202 (47%), Gaps = 22/202 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT+S ++ +C +L + G Q+H + K G + + +AL DMY G + ++ K+F
Sbjct: 472 NQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVF 531
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++ ++V+W II+ GY++ +AL LFRRM + + +T+L V
Sbjct: 532 DKISNPDIVSWTAIIS----------GYAQHGLVEDALQLFRRMEL-SGIKANAVTLLCV 580
Query: 143 LPAIWKNGEVRNC-----QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
L A G V Q+ GYG + C+ID + G + A +
Sbjct: 581 LFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHY-----ACIIDLLGRVGRLDDAMEFIRK 635
Query: 198 TSVDRKNLVSWTTIISGFAMHG 219
++ +V W T++ G +HG
Sbjct: 636 MPMEPNEMV-WQTLLGGCRVHG 656
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 109/275 (39%), Gaps = 36/275 (13%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSH---VYVNTALGDMYVSLGFLKDSSKLFDELP 86
++R C +H + K F+ V N A +Y + + +FDE+P
Sbjct: 70 VLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHA-AHVYSKCSEFRAACGVFDEMP 128
Query: 87 ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE----PSEITILAV 142
+RN+ +W V+I G + DG+ CE P + A+
Sbjct: 129 QRNVFSWTVMIVGSTEHGLFFDGFKFF---------------CEMLNSGILPDKFAYSAI 173
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ + + +++H RGF A I VS L++ YAK G I + +F +
Sbjct: 174 IQSCIGLDSLELGKMVHAQIVMRGF-ATHIFVSTSLLNMYAKLGSIEDSYWVF--NMMTE 230
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR------SWRIGEEGLKFFDKMV 256
N VSW +ISG +G+ EA + F RM+ PN S +G+ K V
Sbjct: 231 HNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEV 290
Query: 257 EECE----VLPDIKHYGCLIDILERAGRLEQAEEV 287
+ C + ++ LID+ + G L A V
Sbjct: 291 QNCASELGIEGNVLVGTALIDMYSKCGSLHDARSV 325
>gi|449519454|ref|XP_004166750.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 552
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 159/332 (47%), Gaps = 45/332 (13%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
+++++Q I + + DS T I LS +G L + G +Y+
Sbjct: 160 LFREMQAINVRA--------DSVTMMKAISATCFLSEWEMGDYLVKYIDEHGVVVDLYLG 211
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK-------------------- 102
L DMY G + + ++F ++ E+N+V+WN +I G K
Sbjct: 212 NTLIDMYGRRGMIDFAGRVFYQMKEKNIVSWNAMIMGYAKVGNLVAAKKLFNEMPSRDVI 271
Query: 103 -WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
WT +I GYS + EA+ LF+ M +P EIT+ L A G + + +H Y
Sbjct: 272 SWTSMIIGYSLAKQHAEAVKLFQEMMV-SMVKPDEITVATALSACAHLGSLDAGEAVHDY 330
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
K + D+ V N LID Y KCG + A ++F D ++ VSWT+IISG A++G
Sbjct: 331 IRKHDIKS-DVFVGNSLIDMYCKCGVVEKALQVFNDMKT--RDSVSWTSIISGLAVNGFA 387
Query: 222 KEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGC 270
+ A+ F++M K G+ P +G ++G++ F M + P++KHYGC
Sbjct: 388 ESALNVFDQMLKEGICPTHGTFVGVLLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGC 447
Query: 271 LIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
++D+L R+G L+ A +P + +VV+WR
Sbjct: 448 VVDLLCRSGYLDMAYNFIKKMPI-VPDVVIWR 478
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/346 (26%), Positives = 154/346 (44%), Gaps = 65/346 (18%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
T+ FL ++C +S G + K+GF+S +V+ AL MYV G L + K+FD
Sbjct: 73 LTFIFLFKSCARVSDVRQGQMVRVHSMKLGFESXSFVSNALIHMYVCFGELAMAQKVFDG 132
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ ER++V+WN II GY + NR + L LFR M A S +T++ +
Sbjct: 133 MLERDVVSWNSIIC----------GYYQFNRFKKVLDLFREMQAINVRADS-VTMMKAIS 181
Query: 145 AI-----WKNGE---------------VRNCQLIHGYGEKRGFNAF-----------DIH 173
A W+ G+ LI YG +RG F +I
Sbjct: 182 ATCFLSEWEMGDYLVKYIDEHGVVVDLYLGNTLIDMYG-RRGMIDFAGRVFYQMKEKNIV 240
Query: 174 VSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
N +I YAK G + +A KLF + + ++++SWT++I G+++ EAV+ F+ M
Sbjct: 241 SWNAMIMGYAKVGNLVAAKKLFNE--MPSRDVISWTSMIIGYSLAKQHAEAVKLFQEMMV 298
Query: 234 VGLKPNR--------------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
+KP+ S GE + K ++ D+ LID+ + G
Sbjct: 299 SMVKPDEITVATALSACAHLGSLDAGEAVHDYIRKH----DIKSDVFVGNSLIDMYCKCG 354
Query: 280 RLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRL 325
+E+A +V + + ++ + V W + L +N + S + + Q L
Sbjct: 355 VVEKALQVFNDMKTR--DSVSWTSIISGLAVNGFAESALNVFDQML 398
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 107/233 (45%), Gaps = 24/233 (10%)
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
LP+ + V + L+ W +I G S+ +R N+A+ + M + + S +T + +
Sbjct: 22 LPKAHFVFNQIQRPTLLVWNHMIHGLSKSDRPNDAIHFYNTMYY-KGIQGSHLTFIFLFK 80
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
+ + +VR Q++ + K GF + VSN LI Y G + A K+F+ + ++
Sbjct: 81 SCARVSDVRQGQMVRVHSMKLGFESXSF-VSNALIHMYVCFGELAMAQKVFD--GMLERD 137
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN--------------RSWRIGEEGLK 250
+VSW +II G+ K+ ++ F MQ + ++ + W +G+ +K
Sbjct: 138 VVSWNSIICGYYQFNRFKKVLDLFREMQAINVRADSVTMMKAISATCFLSEWEMGDYLVK 197
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ D E V+ D+ LID+ R G ++ A V + + N+V W
Sbjct: 198 YID----EHGVVVDLYLGNTLIDMYGRRGMIDFAGRVFYQMKEK--NIVSWNA 244
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 12/197 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + + C L + G +H K +S V+V +L DMY G ++ + ++F
Sbjct: 304 DEITVATALSACAHLGSLDAGEAVHDYIRKHDIKSDVFVGNSLIDMYCKCGVVEKALQVF 363
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+++ R+ V+W II+GL ++G++ AL +F +M E P+ T + V
Sbjct: 364 NDMKTRDSVSWTSIISGLA-----VNGFAE-----SALNVFDQMLK-EGICPTHGTFVGV 412
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G V E A ++ C++D + G + A + +
Sbjct: 413 LLACAHVGLVDKGVEHFKSMENTYRLAPEMKHYGCVVDLLCRSGYLDMAYNFIKKMPI-V 471
Query: 203 KNLVSWTTIISGFAMHG 219
++V W ++S +HG
Sbjct: 472 PDVVIWRILLSACKLHG 488
>gi|77548396|gb|ABA91193.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|125533163|gb|EAY79711.1| hypothetical protein OsI_34859 [Oryza sativa Indica Group]
gi|125575980|gb|EAZ17202.1| hypothetical protein OsJ_32710 [Oryza sativa Japonica Group]
Length = 537
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/361 (29%), Positives = 170/361 (47%), Gaps = 88/361 (24%)
Query: 16 SPLPPLFDSFTYSFLIRTC-----------VTLSYPNLGTQLHAVFSKVGFQSHVYVNTA 64
+PLP T+ L+++C V + + G +LH K+G YV A
Sbjct: 171 TPLP------TFPALLKSCARAFNRSSRAGVASVFVSKGMELHCRVLKLGCGKDRYVRNA 224
Query: 65 LGDMYVSLGFLKDSSKLFDELPERNLVTWNVII---TGLVKWTG---------------- 105
L MY G L D+ K FDE+P++N V+WN ++ W G
Sbjct: 225 LVSMYGKFGRLGDARKAFDEMPDKNAVSWNALVGAHRAAADWMGAERVSQAMPERNLSWW 284
Query: 106 ---------------------------------IIDGYSRMNRSNEALALFRRMAACEYT 132
+I GY+++ + +AL +F+ M
Sbjct: 285 NAEIARNVSIGYMDEASRLFREMPQRDVVSLNSLISGYTKLGKYTKALEIFQEMKE-NAI 343
Query: 133 EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSAS 192
EP+E+T++ +L A K+G++ IH + +G + D V N LID YAKCG + A
Sbjct: 344 EPTELTLVLILGACAKDGKLELGTDIHINLQSKGIVS-DGLVGNALIDMYAKCGRLDLAK 402
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG------- 245
K+F+ S+ +++ W +I GF++HG EA+E F+ M+ ++PN +G
Sbjct: 403 KVFDRMSM--RDITCWNAMIIGFSVHGCSYEALELFDSMK---IEPNPVTFLGVLTACSH 457
Query: 246 ----EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
EG K+F+ M+E+ ++PD+KHYGC+ID+L R GR+E+A + PS N V+W
Sbjct: 458 GGLVNEGRKYFNSMIEDYRIVPDVKHYGCMIDMLCRYGRIEEAYLMIKENPST-ANSVLW 516
Query: 302 R 302
+
Sbjct: 517 K 517
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 80/203 (39%), Gaps = 31/203 (15%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
T ++ C LGT +H G S V AL DMY G L + K+FD
Sbjct: 348 LTLVLILGACAKDGKLELGTDIHINLQSKGIVSDGLVGNALIDMYAKCGRLDLAKKVFDR 407
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ R++ WN +I G+S S EAL LF M EP+ +T L VL
Sbjct: 408 MSMRDITCWNAMII----------GFSVHGCSYEALELFDSMK----IEPNPVTFLGVLT 453
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAF--------DIHVSNCLIDTYAKCGCIFSASKLFE 196
A G V ++ FN+ D+ C+ID + G I A + +
Sbjct: 454 ACSHGGLVNE--------GRKYFNSMIEDYRIVPDVKHYGCMIDMLCRYGRIEEAYLMIK 505
Query: 197 DTSVDRKNLVSWTTIISGFAMHG 219
+ N V W +++ +HG
Sbjct: 506 ENP-STANSVLWKMLLAACRVHG 527
Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 125/336 (37%), Gaps = 90/336 (26%)
Query: 5 KQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTA 64
++ Q H LPP T S G QLHA+ +K+G H +A
Sbjct: 68 RRAHQCVPHPRPRLPP--------------TTASCAAGGHQLHALLAKLGLLHHPEFLSA 113
Query: 65 LGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFR 124
L L + S L E + V+ LV +I +S + AL LF
Sbjct: 114 L------LSRIPPSPSALSLLLE---ASPAVLSPSLV--CPVIVAFSSSPAPSSALILFN 162
Query: 125 RMAACEYTEPSEITILAVLPAIWKN--------------------GEVRNCQLIH-GYGE 163
++C P L PA+ K+ G +C+++ G G+
Sbjct: 163 HASSCSLPTP-----LPTFPALLKSCARAFNRSSRAGVASVFVSKGMELHCRVLKLGCGK 217
Query: 164 KRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKE 223
R +V N L+ Y K G + A K F++ + KN VSW ++ G +
Sbjct: 218 DR-------YVRNALVSMYGKFGRLGDARKAFDE--MPDKNAVSWNALV------GAHRA 262
Query: 224 AVE--NFERMQKVGLKPNRSW---------RIG--EEGLKFFDKMVEECEVLPDIKHYGC 270
A + ER+ + + N SW IG +E + F +M + D+
Sbjct: 263 AADWMGAERVSQAMPERNLSWWNAEIARNVSIGYMDEASRLFREMPQR-----DVVSLNS 317
Query: 271 LIDILERAGRLEQAEEVASGI------PSQITNVVV 300
LI + G+ +A E+ + P+++T V++
Sbjct: 318 LISGYTKLGKYTKALEIFQEMKENAIEPTELTLVLI 353
>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 96/291 (32%), Positives = 149/291 (51%), Gaps = 29/291 (9%)
Query: 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF 74
H + P + FTY LIR C G Q+HA K GF + + L MYV+
Sbjct: 87 HKSVSP--NKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQS 144
Query: 75 LKDSSKLFDELPER--NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT 132
L+ + ++FD +P+R N V+WN +I Y + NR +EA ALF RM E
Sbjct: 145 LEQARRVFDNMPQRDRNSVSWNAMIAA----------YVQSNRLHEAFALFDRMR-LENV 193
Query: 133 EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSAS 192
+ ++L A G + + IHGY EK G D ++ +ID Y KCGC+ AS
Sbjct: 194 VLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIE-LDSKLATTVIDMYCKCGCLEKAS 252
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG------- 245
++F + + +K + SW +I G AMHG G+ A+E F+ M++ + P+ +
Sbjct: 253 EVFNE--LPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAH 310
Query: 246 ----EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
EEG +F M E + P ++H+GC++D+L RAG LE+A ++ + +P
Sbjct: 311 SGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMP 361
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/233 (25%), Positives = 98/233 (42%), Gaps = 34/233 (14%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
+ D F + ++ C L G +H K G + + T + DMY G L+ +S+
Sbjct: 194 VLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASE 253
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F+ELP++ + +WN +I GL + + A+ LF+ M E P IT +
Sbjct: 254 VFNELPQKGISSWNCMIGGL----------AMHGKGEAAIELFKEMER-EMVAPDGITFV 302
Query: 141 AVLPAIWKNGEVRNCQLIHGY-----GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
VL A +G V + Y G K G F C++D + G + A KL
Sbjct: 303 NVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHF-----GCMVDLLGRAGLLEEARKLI 357
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-----LKPNRSWR 243
+ V+ V ++ +HG N E +++G L+P+ S R
Sbjct: 358 NEMPVNPDAGV-LGALVGACRIHG-------NTELGEQIGKKVIELEPHNSGR 402
>gi|297727903|ref|NP_001176315.1| Os11g0114800 [Oryza sativa Japonica Group]
gi|255679719|dbj|BAH95043.1| Os11g0114800, partial [Oryza sativa Japonica Group]
Length = 483
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 105/361 (29%), Positives = 170/361 (47%), Gaps = 88/361 (24%)
Query: 16 SPLPPLFDSFTYSFLIRTC-----------VTLSYPNLGTQLHAVFSKVGFQSHVYVNTA 64
+PLP T+ L+++C V + + G +LH K+G YV A
Sbjct: 117 TPLP------TFPALLKSCARAFNRSSRAGVASVFVSKGMELHCRVLKLGCGKDRYVRNA 170
Query: 65 LGDMYVSLGFLKDSSKLFDELPERNLVTWNVII---TGLVKWTG---------------- 105
L MY G L D+ K FDE+P++N V+WN ++ W G
Sbjct: 171 LVSMYGKFGRLGDARKAFDEMPDKNAVSWNALVGAHRAAADWMGAERVSQAMPERNLSWW 230
Query: 106 ---------------------------------IIDGYSRMNRSNEALALFRRMAACEYT 132
+I GY+++ + +AL +F+ M
Sbjct: 231 NAEIARNVSIGYMDEASRLFREMPQRDVVSLNSLISGYTKLGKYTKALEIFQEMKE-NAI 289
Query: 133 EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSAS 192
EP+E+T++ +L A K+G++ IH + +G + D V N LID YAKCG + A
Sbjct: 290 EPTELTLVLILGACAKDGKLELGTDIHINLQSKGIVS-DGLVGNALIDMYAKCGRLDLAK 348
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG------- 245
K+F+ S+ +++ W +I GF++HG EA+E F+ M+ ++PN +G
Sbjct: 349 KVFDRMSM--RDITCWNAMIIGFSVHGCSYEALELFDSMK---IEPNPVTFLGVLTACSH 403
Query: 246 ----EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
EG K+F+ M+E+ ++PD+KHYGC+ID+L R GR+E+A + PS N V+W
Sbjct: 404 GGLVNEGRKYFNSMIEDYRIVPDVKHYGCMIDMLCRYGRIEEAYLMIKENPST-ANSVLW 462
Query: 302 R 302
+
Sbjct: 463 K 463
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 80/203 (39%), Gaps = 31/203 (15%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
T ++ C LGT +H G S V AL DMY G L + K+FD
Sbjct: 294 LTLVLILGACAKDGKLELGTDIHINLQSKGIVSDGLVGNALIDMYAKCGRLDLAKKVFDR 353
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ R++ WN +I G+S S EAL LF M EP+ +T L VL
Sbjct: 354 MSMRDITCWNAMII----------GFSVHGCSYEALELFDSMK----IEPNPVTFLGVLT 399
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAF--------DIHVSNCLIDTYAKCGCIFSASKLFE 196
A G V ++ FN+ D+ C+ID + G I A + +
Sbjct: 400 ACSHGGLVNE--------GRKYFNSMIEDYRIVPDVKHYGCMIDMLCRYGRIEEAYLMIK 451
Query: 197 DTSVDRKNLVSWTTIISGFAMHG 219
+ N V W +++ +HG
Sbjct: 452 ENP-STANSVLWKMLLAACRVHG 473
>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
[Vitis vinifera]
Length = 597
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 92/290 (31%), Positives = 153/290 (52%), Gaps = 26/290 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++ T ++ C L + NLG +H K+G V + AL +Y G ++ + LF
Sbjct: 228 NAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLF 287
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + +NLV+WN +I Y + N A+ LFRRM A E + IT+++V
Sbjct: 288 DGMVVQNLVSWNAMIAA----------YEQNNAGANAVKLFRRMQA-EKVDFDYITMVSV 336
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A G + + +H +++G ++ ++N LID YAKCG I A ++FE
Sbjct: 337 ISACASLGALNTGRWMHELVKRKGLE-INVSITNALIDMYAKCGNIDLAREVFERLPC-- 393
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKF 251
+++VSWT++I A HG G++A++ F RM+ G+KPN R + EEG K
Sbjct: 394 RSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKH 453
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F+ M+ + ++P ++H C++D+L RAG L +A E +P + +V VW
Sbjct: 454 FESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVE-PDVSVW 502
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 147/293 (50%), Gaps = 30/293 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++T+ F++R+C LS G ++H K GF S V+V ++L MY G +F
Sbjct: 127 DNYTFPFVVRSCAVLSALREGKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVF 186
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRS-NEALALFRRMAACEYTEPSEITILA 141
E+ RN+V+W +I G V+ NR E L +FR M T+P+ +T+++
Sbjct: 187 GEMVVRNIVSWTAVIAGYVQ-----------NRYFKEGLGVFREMVG-SGTQPNAVTLVS 234
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VLPA + +LIHGYG K G + D+ ++N LI Y KCG + +A LF+ V
Sbjct: 235 VLPACAGLEFLNLGKLIHGYGIKLGVDP-DVSLTNALIALYGKCGNVETARSLFDGMVV- 292
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQ--KVG---------LKPNRSWRIGEEGLK 250
+NLVSW +I+ + + G AV+ F RMQ KV + S G +
Sbjct: 293 -QNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISACASLGALNTG-R 350
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ ++V+ + ++ LID+ + G ++ A EV +P + +VV W +
Sbjct: 351 WMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCR--SVVSWTS 401
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 85/321 (26%), Positives = 152/321 (47%), Gaps = 45/321 (14%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD-SSK 80
+ S ++++L+ C +L P+L +++HA+ G ++ ++T L L D + K
Sbjct: 27 YHSRSFNYLLNCCSSL--PDL-SRIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARK 83
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC-----EYTEPS 135
+FD++P+R++ WN +I G Y+ EALAL+ M YT P
Sbjct: 84 MFDQMPKRDVFLWNTLIRG----------YADAGPCEEALALYSNMHGAGLFPDNYTFPF 133
Query: 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
+ AVL A+ + EV +C ++ K GF++ D+ V + L+ Y++ G +F
Sbjct: 134 VVRSCAVLSALREGKEV-HCNIV-----KHGFDS-DVFVQSSLVAMYSQSGETLGMELVF 186
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGE----EGLKF 251
+ V +N+VSWT +I+G+ + KE + F M G +PN + GL+F
Sbjct: 187 GEMVV--RNIVSWTAVIAGYVQNRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEF 244
Query: 252 FD--KMVE----ECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGF 305
+ K++ + V PD+ LI + + G +E A + G+ Q N+V W
Sbjct: 245 LNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGNVETARSLFDGMVVQ--NLVSWNA-- 300
Query: 306 LRLLINSYFFSPITLNSQRLF 326
+I +Y + N+ +LF
Sbjct: 301 ---MIAAYEQNNAGANAVKLF 318
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 86/198 (43%), Gaps = 14/198 (7%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD T +I C +L N G +H + + G + +V + AL DMY G + + ++
Sbjct: 328 FDYITMVSVISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREV 387
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+ LP R++V+ WT +I + +AL LF RM E +P+ T A
Sbjct: 388 FERLPCRSVVS----------WTSMIGACASHGHGEDALKLFSRMKD-EGVKPNSFTFAA 436
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAF-DIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
V A +G V + H R ++ + C++D + G + A + + V
Sbjct: 437 VFTACRHSGLVEEGR-KHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPV 495
Query: 201 DRKNLVSWTTIISGFAMH 218
+ ++ W ++ +H
Sbjct: 496 E-PDVSVWGALLGSCRIH 512
>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/304 (32%), Positives = 151/304 (49%), Gaps = 36/304 (11%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L +++TYSFL + C L+ LG H K+G++ + +V L M+ G + + K
Sbjct: 108 LPNNYTYSFLFKACTDLNNLYLGLACHCQSIKLGWEFYDFVQNGLVHMFAIFGCMDSARK 167
Query: 81 LFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEA 119
LFD R+++TW +I G V+ W+ +I GY R+ EA
Sbjct: 168 LFDLSSNRDVITWTALINGYVRAGQVLIGRELFDKMPERNSVSWSAMITGYVRVGFFEEA 227
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
L LF M + P+ I+ + A G + + IH Y KR D + LI
Sbjct: 228 LELFNAMLISGFW-PNHAGIVCAINACASLGALDQGRWIHCY-IKRNRMDLDRVMGAALI 285
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D YAKCGCI A +F + + +++ +T +ISG A HG AVE FERM G+ PN
Sbjct: 286 DMYAKCGCIEIACSIFGE--LRNRDVHVYTCLISGLANHGQSATAVELFERMHSEGVVPN 343
Query: 240 R---------SWRIG--EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
R+G ++GL+ F+ M + P ++HYGCL+D+L RAG+LE+A+++
Sbjct: 344 EVTFVSVLNACSRMGLVDKGLRIFENMSKIYGDEPQVQHYGCLVDLLGRAGKLEEAKKLV 403
Query: 289 SGIP 292
+P
Sbjct: 404 KEMP 407
>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 820
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 151/293 (51%), Gaps = 27/293 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY-VNTALGDMYVSLGFLKDSSKL 81
D +TY + G +H + K G V VN A+ D Y GFL+D K+
Sbjct: 424 DLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKV 483
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + ER++V+W ++T YS+ + EALA F M E P++ T +
Sbjct: 484 FDRMEERDIVSWTTLVTA----------YSQSSLGEEALATFCLMRE-EGFAPNQFTFSS 532
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL + + + +HG K G + + + + LID YAKCG I A K+F+ S
Sbjct: 533 VLISCASLCFLEYGRQVHGLLCKAGLDT-EKCIESALIDMYAKCGSITEAGKVFDKIS-- 589
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLK 250
++VSWT IISG+A HG+ ++A++ F RM+ G+K N + EEGL
Sbjct: 590 NPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLF 649
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+F +M + V+P+++HY C+ID+L R GRL+ A E +P + N +VW+T
Sbjct: 650 YFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPME-PNEMVWQT 701
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 92/340 (27%), Positives = 158/340 (46%), Gaps = 49/340 (14%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D F YS +I++C+ L LG +HA GF +H++V+T+L +MY LG ++DS
Sbjct: 218 LPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYW 277
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM--AACEYTEPSEIT 138
+F+ + E N V+WN +I+G +G EA LF RM AC P+ T
Sbjct: 278 VFNMMTEHNQVSWNAMISGCTS-----NGLHL-----EAFDLFVRMKNGAC---TPNMYT 324
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+++V A+ K +V + + + G ++ V LID Y+KCG + A +F+
Sbjct: 325 LVSVSKAVGKLVDVNMGKEVQNCASELGIEG-NVLVGTALIDMYSKCGSLHDARSVFDTN 383
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN--------------RSWRI 244
++ W +ISG++ G +EA+E + +M + G+ + +S +
Sbjct: 384 FINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQF 443
Query: 245 GEEGLKFFDKMVEECEV-LPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
G + MV +C + L + + D + G LE +V + + ++V W T
Sbjct: 444 G----RVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEER--DIVSWTT 497
Query: 304 GFLRLLINSYFFSPITLNSQRLFFFPAALYALTQILGFKP 343
L+ +Y S +L + L A + L + GF P
Sbjct: 498 -----LVTAY--SQSSLGEEAL-----ATFCLMREEGFAP 525
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 95/202 (47%), Gaps = 22/202 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT+S ++ +C +L + G Q+H + K G + + +AL DMY G + ++ K+F
Sbjct: 526 NQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVF 585
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++ ++V+W II+ GY++ +AL LFRRM + + +T+L V
Sbjct: 586 DKISNPDIVSWTAIIS----------GYAQHGLVEDALQLFRRMEL-SGIKANAVTLLCV 634
Query: 143 LPAIWKNGEVRNC-----QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
L A G V Q+ GYG + C+ID + G + A +
Sbjct: 635 LFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHY-----ACIIDLLGRVGRLDDAMEFIRK 689
Query: 198 TSVDRKNLVSWTTIISGFAMHG 219
++ +V W T++ G +HG
Sbjct: 690 MPMEPNEMV-WQTLLGGCRVHG 710
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 109/275 (39%), Gaps = 36/275 (13%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSH---VYVNTALGDMYVSLGFLKDSSKLFDELP 86
++R C +H + K F+ V N A +Y + + +FDE+P
Sbjct: 124 VLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHA-AHVYSKCSEFRAACGVFDEMP 182
Query: 87 ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE----PSEITILAV 142
+RN+ +W V+I G + DG+ CE P + A+
Sbjct: 183 QRNVFSWTVMIVGSTEHGLFFDGFKFF---------------CEMLNSGILPDKFAYSAI 227
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ + + +++H RGF A I VS L++ YAK G I + +F +
Sbjct: 228 IQSCIGLDSLELGKMVHAQIVMRGF-ATHIFVSTSLLNMYAKLGSIEDSYWVF--NMMTE 284
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR------SWRIGEEGLKFFDKMV 256
N VSW +ISG +G+ EA + F RM+ PN S +G+ K V
Sbjct: 285 HNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEV 344
Query: 257 EECE----VLPDIKHYGCLIDILERAGRLEQAEEV 287
+ C + ++ LID+ + G L A V
Sbjct: 345 QNCASELGIEGNVLVGTALIDMYSKCGSLHDARSV 379
>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 741
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 155/293 (52%), Gaps = 30/293 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ C LG Q+H+ GF S++ + +L D+Y G L+ + LF
Sbjct: 265 DESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLF 324
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ L +++++WN +I GY+ MN EAL LF+ M P+++T+L++
Sbjct: 325 EGLLYKDVISWNTLI----------GGYTHMNLYKEALLLFQEMLR-SGERPNDVTMLSI 373
Query: 143 LPAIWKNGEVRNCQLIHGYGEKR---GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
LPA G + + IH Y +KR NA + S LID YAKCG I +A ++F S
Sbjct: 374 LPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTS--LIDMYAKCGDIEAAHQVF--NS 429
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
+ K+L SW +I GFAMHG A + F RM+K+G++P+ +G + G
Sbjct: 430 ILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLG 489
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F M ++ ++ P ++HYGC+ID+L +G ++AEE+ + + + + V+W
Sbjct: 490 RHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEME-PDGVIW 541
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/306 (27%), Positives = 150/306 (49%), Gaps = 41/306 (13%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L +S+T+ FL+++C G Q+H K+G+ ++V+T+L +YV G L+D+ K
Sbjct: 131 LPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARK 190
Query: 81 LFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEA 119
+FD P R++V++ +I G +V W +I GY+ EA
Sbjct: 191 VFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEA 250
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
L LF+ M P E T++ V+ A ++G + + +H + + GF + ++ + N L+
Sbjct: 251 LELFKEMMKTN-IRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGS-NLKIVNSLM 308
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D Y+KCG + +A LFE + K+++SW T+I G+ + KEA+ F+ M + G +PN
Sbjct: 309 DLYSKCGELETACGLFE--GLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPN 366
Query: 240 R--------------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAE 285
+ IG + DK ++ ++ LID+ + G +E A
Sbjct: 367 DVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLR--TSLIDMYAKCGDIEAAH 424
Query: 286 EVASGI 291
+V + I
Sbjct: 425 QVFNSI 430
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 142/346 (41%), Gaps = 68/346 (19%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV---SLGFLKDSSKLFDELP 86
L+ C TL L +HA K G + Y + L ++ V L + +F+ +
Sbjct: 39 LLHNCKTLQSLRL---IHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQ 95
Query: 87 ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI 146
E NL+ WN + G++ + AL L+ M + P+ T +L +
Sbjct: 96 EPNLLIWNTMFR----------GHALSSDPVSALKLYVCMISLGLL-PNSYTFPFLLKSC 144
Query: 147 WKNGEVRNCQLIHGYGEKRGFN--------AFDIHVSN---------------------- 176
K+ + Q IHG+ K G++ ++V N
Sbjct: 145 AKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYT 204
Query: 177 CLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
LI YA G I SA KLF++ V K++VSW +ISG+A G KEA+E F+ M K +
Sbjct: 205 ALIKGYASRGYIESAQKLFDEIPV--KDVVSWNAMISGYAETGNYKEALELFKEMMKTNI 262
Query: 237 KPNRSWRI------GEEGLKFFDKMV----EECEVLPDIKHYGCLIDILERAGRLEQAEE 286
+P+ S + + G + V ++ ++K L+D+ + G LE A
Sbjct: 263 RPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACG 322
Query: 287 VASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAAL 332
+ G+ + +V+ W T LI Y + + L + L F L
Sbjct: 323 LFEGLLYK--DVISWNT-----LIGGY--THMNLYKEALLLFQEML 359
>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 154/282 (54%), Gaps = 26/282 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++ T+ ++ C Y ++G +H + K F + V+ AL DMYV G L + ++F
Sbjct: 131 NAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLPGAKQVF 190
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DEL E+++V+W II+GLV+ N EAL LF+ M + EP I + +V
Sbjct: 191 DELAEKDIVSWTSIISGLVQ----------CNCPKEALELFQDMQS-SGIEPDGIILTSV 239
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + G + + +H + +++ +DI + ++D YAKCGCI + ++F +
Sbjct: 240 LSACARLGALDYGRWVHEHIDRKAIK-WDIQIGTAMVDMYAKCGCIEMSMQIF--NGMPH 296
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN+++W +++G AMHG + +E FE M +VG++PN + EG ++
Sbjct: 297 KNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQY 356
Query: 252 FDKMV-EECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
F+ M ++ + P ++HYGC++D+L RA L++A E+ +P
Sbjct: 357 FNWMKGQQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMP 398
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/330 (29%), Positives = 168/330 (50%), Gaps = 37/330 (11%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
FLVY++ I LP D FT+ ++++C G Q+H V K+GF ++Y
Sbjct: 19 FLVYRR-----IVKDGFLP---DMFTFPAVLKSCAKFVGIGEGRQVHGVIIKMGFVCNIY 70
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
V +L Y D+S++FDE+ R++V+ WTG+I GY R +EA+
Sbjct: 71 VENSLVHFYSVCKRFGDASRVFDEMLVRDVVS----------WTGVISGYVRAGLFDEAV 120
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LF RM EP+ T ++VL A + G + + IHG K F + VSN L+D
Sbjct: 121 GLFLRMD----VEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGV-GLEVSNALMD 175
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN- 239
Y KCGC+ A ++F++ + K++VSWT+IISG KEA+E F+ MQ G++P+
Sbjct: 176 MYVKCGCLPGAKQVFDELA--EKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDG 233
Query: 240 --------RSWRIGE-EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
R+G + ++ + ++ + DI+ ++D+ + G +E + ++ +G
Sbjct: 234 IILTSVLSACARLGALDYGRWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNG 293
Query: 291 IPSQITNVVVWRTGFLRLLINSYFFSPITL 320
+P + NV+ W L ++ + + + L
Sbjct: 294 MPHK--NVLTWNALLNGLAMHGHAYKVLEL 321
>gi|297734524|emb|CBI15771.3| unnamed protein product [Vitis vinifera]
Length = 436
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 166/318 (52%), Gaps = 40/318 (12%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D++++ F+++ C LS + G ++H+ K+G V+V AL + S G ++ +
Sbjct: 7 LPDNYSFPFVLKACARLSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARA 66
Query: 81 LFDELPE--RNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSN 117
+FD LP R++V+WN +I+G ++ WT +I GY++ +
Sbjct: 67 VFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFDRIPHRNTVCWTSMIAGYAQSDLFK 126
Query: 118 EALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
EA+ LFR M + + TI VL A G + + IH Y E+ D++ N
Sbjct: 127 EAIELFREMQIGGFAADAA-TIACVLSACGHWGALAQGRWIHLYCERNSIE-MDLNARNA 184
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-L 236
LI Y+KCG I A ++F + + ++ SW+ +ISG AM+G +A+ F +M+ + +
Sbjct: 185 LIGMYSKCGDIQKALEIFH--GLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDI 242
Query: 237 KPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAE 285
+PN +G ++GL +F+ M + + P I+HYGC++D+L RA L +AE
Sbjct: 243 RPNEITFLGVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAE 302
Query: 286 EVASGIPSQITNVVVWRT 303
+ +P Q +VV+WR+
Sbjct: 303 KFIRTLPIQ-PDVVIWRS 319
>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
Length = 650
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 167/301 (55%), Gaps = 37/301 (12%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVT----LSYPNLGTQLHAVFSKVGFQSH 58
+Y+++ I I S D FTY+++++ CV +S N G ++HA + G+ +
Sbjct: 158 MYRRMNSIGIPS--------DRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGY 209
Query: 59 VYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNE 118
V++ T L DMY G + ++S +F+++P +N+V+W+ +I Y++ ++ E
Sbjct: 210 VHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIA----------CYAKNGKAFE 259
Query: 119 ALALFRR-MAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
AL LFR M + P+ +T+++VL A + +LIHGY ++G ++ + V +
Sbjct: 260 ALELFRELMLETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYILRKGLDSI-LPVISA 318
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
L+ YA+CG + ++F+ +D++++VSW ++IS + +HG GK+A+ FE M G++
Sbjct: 319 LVTMYARCGKLELGQRVFDQ--MDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVE 376
Query: 238 PN-----------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
P+ + +EG F+ M + P ++HY C++D+L RA RLE+A +
Sbjct: 377 PSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAK 436
Query: 287 V 287
+
Sbjct: 437 I 437
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/316 (25%), Positives = 138/316 (43%), Gaps = 45/316 (14%)
Query: 18 LPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD 77
L P TY LI +C + ++H + GF ++ T L +MY + +
Sbjct: 64 LEPNPAQHTYELLILSCTHQNSLLDAQRVHRHLLENGFDQDPFLATKLINMYSFFDSIDN 123
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE- 136
+ K+FD+ R + +N + L S E L ++RRM + PS+
Sbjct: 124 ARKVFDKTRNRTIYVYNALFRAL----------SLAGHGEEVLNMYRRMNSIGI--PSDR 171
Query: 137 ITILAVLPAIWKN----GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSAS 192
T VL A + + + IH + + G++ + +H+ L+D YAK GC+ +AS
Sbjct: 172 FTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGY-VHIMTTLVDMYAKFGCVSNAS 230
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER--MQKVGLKPNRSWRIG----- 245
+F V KN+VSW+ +I+ +A +G EA+E F ++ L PN +
Sbjct: 231 CVFNQMPV--KNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSVTMVSVLQAC 288
Query: 246 ------EEGLKFFDKMVEEC--EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITN 297
E+G ++ + +LP I L+ + R G+LE + V + + +
Sbjct: 289 AALAALEQGRLIHGYILRKGLDSILPVI---SALVTMYARCGKLELGQRVFDQMDKR--D 343
Query: 298 VVVWRTGFLRLLINSY 313
VV W + LI+SY
Sbjct: 344 VVSWNS-----LISSY 354
>gi|226531155|ref|NP_001148193.1| methyltransferase small domain [Zea mays]
gi|195616632|gb|ACG30146.1| methyltransferase small domain [Zea mays]
Length = 656
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 95/314 (30%), Positives = 151/314 (48%), Gaps = 55/314 (17%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY-------------------- 69
L++ C S G QLH V K GF + +V L Y
Sbjct: 283 LMKACARYSAVTEGQQLHTVILKNGFDALAFVQATLVHFYGCCGLIGLAQMTFRLSDKSH 342
Query: 70 -----------VSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNE 118
+ G ++++ +LFD++PER+ V+W+ +I+ GY + RS+
Sbjct: 343 TASWNALLAALLRNGLIREARELFDDMPERDTVSWSTMIS----------GYVQTGRSDM 392
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
AL LF M EP+E+T+ + L AI +G + + IH Y R D ++S+ L
Sbjct: 393 ALKLFYSMLNTS-IEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTD-NLSSGL 450
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
ID YAKCG I A + F + ++ W +I A+HG +++ F ++Q+ +KP
Sbjct: 451 IDMYAKCGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKP 510
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
N IG +G +F+ M E + P IKHYGC++D+L RAG LE+AE++
Sbjct: 511 NSITFIGVLSACCHAGTVTKGKYYFESMTREYGIQPTIKHYGCMVDLLGRAGYLEEAEQL 570
Query: 288 ASGIPSQITNVVVW 301
S +P + +VV+W
Sbjct: 571 VSMMPMK-PDVVIW 583
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 137/331 (41%), Gaps = 71/331 (21%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYVSL-GF 74
PL P FL+ + + G QLHA+ +K G S+V+V ++ Y L
Sbjct: 7 PLAP--------FLVASLKRAARLRCGEQLHALAAKSGLLASNVFVRNSVLSSYSRLPSS 58
Query: 75 LKDSSKLFDELPE--RNLVTWNVIITGL-----------------------VKWTGIIDG 109
L + +LFDE P R+ N I+ L V +T ++
Sbjct: 59 LASALQLFDETPPPLRDATARNSILAALTRAGHLDRAQGLLEEMPRIHRDAVSYTTLVTA 118
Query: 110 YSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNA 169
++R + A+A+FR M + E P+E T+ + A + G +IHG+ +R +
Sbjct: 119 FARAGHAARAVAVFRSMLS-ENVVPNEATLAGAITAFARCGAPATVGMIHGFALQRALDG 177
Query: 170 FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFE 229
F I +N L+ YA + SA LF+ + +N V+W +++G+ M A E F
Sbjct: 178 FVIVATN-LVHAYAGVLELCSARALFD--GMTHRNTVTWNVMLNGYVKAKMIDMAAEVFW 234
Query: 230 RMQKVGLKPNRSW----------RIGEEGLKFFDKMVEEC-----EVLPDIKHYGCLIDI 274
R+ + + SW + + +K + +MV E EVL L+D+
Sbjct: 235 RIPE---RDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDYEVL--------LVDL 283
Query: 275 LERAGRLEQAEEVASGIPSQITNVVVWRTGF 305
++ R E Q + V+ + GF
Sbjct: 284 MKACARYSAVTE------GQQLHTVILKNGF 308
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 77/346 (22%), Positives = 129/346 (37%), Gaps = 65/346 (18%)
Query: 40 PNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG 99
P +H + V V T L Y + L + LFD + RN VTWNV++ G
Sbjct: 160 PATVGMIHGFALQRALDGFVIVATNLVHAYAGVLELCSARALFDGMTHRNTVTWNVMLNG 219
Query: 100 LVK---------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
VK W +IDGY + ++A+ + +M E+
Sbjct: 220 YVKAKMIDMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDYEVL 279
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD------IHVSNC--------------- 177
++ ++ A + V Q +H K GF+A +H C
Sbjct: 280 LVDLMKACARYSAVTEGQQLHTVILKNGFDALAFVQATLVHFYGCCGLIGLAQMTFRLSD 339
Query: 178 ---------LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENF 228
L+ + G I A +LF+D + ++ VSW+T+ISG+ G A++ F
Sbjct: 340 KSHTASWNALLAALLRNGLIREARELFDD--MPERDTVSWSTMISGYVQTGRSDMALKLF 397
Query: 229 ERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILER 277
M ++PN ++G D ++ L D G LID+ +
Sbjct: 398 YSMLNTSIEPNEVTLASALSAIADSGTLDQGKWIHDYIMNRPVQLTDNLSSG-LIDMYAK 456
Query: 278 AGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQ 323
G + A + + + + ++V W L I+ Y + L SQ
Sbjct: 457 CGSIADAVQFFNRVNDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQ 502
>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950 [Vitis vinifera]
Length = 1291
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 155/290 (53%), Gaps = 26/290 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D F + F +++C LS G +H G + ++V+ AL DMY G ++ + +F
Sbjct: 817 DKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVF 876
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++ R+LV+ WT +I GY+ ++E L F M + P+ ++IL+V
Sbjct: 877 DKMAVRDLVS----------WTSMISGYAHNGYNSETLGFFDLMRSSGVI-PNRVSILSV 925
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G +R + H Y + GF FDI V+ ++D Y+KCG + A LF++T+
Sbjct: 926 LLACGNLGALRKGEWFHSYVIQTGFE-FDILVATAIMDMYSKCGSLDLARCLFDETA--G 982
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKF 251
K+LV W+ +I+ + +HG G++A++ F++M K G++P+ + EEG +
Sbjct: 983 KDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMY 1042
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F M EE + + +Y C++D+L RAG+L +A ++ +P + + +W
Sbjct: 1043 FQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVE-PDASIW 1091
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 154/282 (54%), Gaps = 26/282 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S T ++ C G ++H + GF+ V+TAL DMY+ ++ LF
Sbjct: 306 NSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLF 365
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
LP++++V+W ++ GY++ + +++ +FR M + + +P + ++ +
Sbjct: 366 QRLPKKDVVSW----------VALLSGYAQNGMAYKSMGVFRNMLS-DGIQPDAVAVVKI 414
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + G + +HGY + GFN+ ++ V LI+ Y+KCG + A KLF+ V
Sbjct: 415 LAASSELGIFQQALCLHGYVVRSGFNS-NVFVGASLIELYSKCGSLGDAVKLFKGMIV-- 471
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-LKPNRSWRIG-----------EEGLK 250
+++V W+++I+ + +HG G EA+E F++M K ++PN + EEGLK
Sbjct: 472 RDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLK 531
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
FD+MV + ++ PD +H+G ++D+L R G+L +A ++ + +P
Sbjct: 532 IFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMP 573
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 110/219 (50%), Gaps = 14/219 (6%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
+ D T ++ C L G+ +H + + F + + +L ++Y G K ++
Sbjct: 203 VLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAAN 262
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
LF ++PE+++++W+ +I Y+ +NEAL LF M + EP+ +T++
Sbjct: 263 LFSKMPEKDVISWSTMIA----------CYANNEAANEALNLFHEMIEKRF-EPNSVTVV 311
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+ L A + + + IH +GF D VS LID Y KC C A LF+ +
Sbjct: 312 SALQACAVSRNLEEGKKIHKIAVWKGFE-LDFSVSTALIDMYMKCSCPDEAVDLFQ--RL 368
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+K++VSW ++SG+A +GM +++ F M G++P+
Sbjct: 369 PKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPD 407
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 110/218 (50%), Gaps = 14/218 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVSLGFLKDSSKL 81
D+FT ++ C L LG +H K S ++V +AL ++Y G + ++ K+
Sbjct: 102 DNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKV 161
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+E + V W T ++ GY + N EALALF +M + +T+++
Sbjct: 162 FEEFQRPDTVLW----------TSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVS 211
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
V+ A + V+ +HG +R F+ D+ + N L++ YAK GC A+ LF + +
Sbjct: 212 VVSACAQLLNVKAGSCVHGLVIRREFDG-DLPLVNSLLNLYAKTGCEKIAANLF--SKMP 268
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
K+++SW+T+I+ +A + EA+ F M + +PN
Sbjct: 269 EKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPN 306
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 12/188 (6%)
Query: 44 TQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKW 103
+QLH+ K G + T L +Y L+ + K+FDE P N+ WN
Sbjct: 21 SQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWN--------- 71
Query: 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGE 163
+ Y R + E L LF M P TI L A + ++IHG+ +
Sbjct: 72 -STLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAK 130
Query: 164 KRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKE 223
K D+ V + L++ Y+KCG + A K+FE+ R + V WT++++G+ + +E
Sbjct: 131 KNDEIGSDMFVGSALVELYSKCGQMGEALKVFEE--FQRPDTVLWTSMVTGYQQNNDPEE 188
Query: 224 AVENFERM 231
A+ F +M
Sbjct: 189 ALALFSQM 196
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 97/196 (49%), Gaps = 14/196 (7%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
+ HA G Q + T MYVS + +S +F+++P WNV+I G
Sbjct: 738 KTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFA--- 794
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
DG R +L L+ +M + +P + L + +++ ++IH +
Sbjct: 795 --TDG-----RFLSSLELYSKMME-KGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVC 846
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
G + D+ V L+D YAKCG I +A +F+ +V ++LVSWT++ISG+A +G E
Sbjct: 847 CGCSN-DLFVDAALVDMYAKCGDIEAARLVFDKMAV--RDLVSWTSMISGYAHNGYNSET 903
Query: 225 VENFERMQKVGLKPNR 240
+ F+ M+ G+ PNR
Sbjct: 904 LGFFDLMRSSGVIPNR 919
>gi|222623259|gb|EEE57391.1| hypothetical protein OsJ_07563 [Oryza sativa Japonica Group]
Length = 748
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 154/314 (49%), Gaps = 38/314 (12%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P + F Y ++R + L +H K GF H ++ T+L D Y G + D+
Sbjct: 329 PAPNQFVYPLVLRAACAIGV-QLVRSIHCHACKDGFYGHDFIRTSLLDGYSRYGMMGDAR 387
Query: 80 KLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNE 118
KLFD L +RN+V+W +++G + W II G ++ E
Sbjct: 388 KLFDGLTDRNVVSWTALVSGYARAGKVGDAIVLFERMPQRDVPAWNAIIAGCTQNGLFVE 447
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
A+ +FRRM E P+ T+ +L A G ++ ++IHGY R F V N L
Sbjct: 448 AVGIFRRMVD-EGFRPNGTTVSCLLSACGHLGMLKIGKVIHGYA-WRSCVGFGSSVVNGL 505
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
ID Y KCG + A +F D DR L +W ++I+ A+HG + A+ F M+ G++P
Sbjct: 506 IDMYGKCGNLMEAKWIF-DAFSDR-GLTTWNSLINCLALHGCSESAIAVFNSMRNEGVQP 563
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ +G +EGL++F+ M +E + P+I+HYGC++D+L RAGR + A
Sbjct: 564 DEVTFVGLLNACTHGGFVDEGLRYFELMCDEHGIEPEIEHYGCVVDLLCRAGRFQDAMNF 623
Query: 288 ASGIPSQITNVVVW 301
+ + Q + V+W
Sbjct: 624 INDMKVQ-PDEVIW 636
>gi|115444423|ref|NP_001045991.1| Os02g0164600 [Oryza sativa Japonica Group]
gi|49388051|dbj|BAD25165.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|49388408|dbj|BAD25541.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535522|dbj|BAF07905.1| Os02g0164600 [Oryza sativa Japonica Group]
gi|125538213|gb|EAY84608.1| hypothetical protein OsI_05976 [Oryza sativa Indica Group]
gi|125580926|gb|EAZ21857.1| hypothetical protein OsJ_05503 [Oryza sativa Japonica Group]
gi|215737275|dbj|BAG96204.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 476
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 144/282 (51%), Gaps = 26/282 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +T FLI C + P L LH ++G+ S ++ TAL + Y + F + ++F
Sbjct: 120 DRYTLPFLIHACSSGDRP-LCESLHGQSLRLGYSSVLFTQTALMNAYFACRFEVAARRVF 178
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE-YTEPSEITILA 141
DE+ +++V W TG++ GY + +F+ M +CE P+ T+++
Sbjct: 179 DEMQAKDVVAW----------TGMVSGYVDSGMFLRGVEVFQEMRSCEEAVRPNVATVVS 228
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
V A G + + +H Y EK G ++ V N LID Y KCG I A LF +
Sbjct: 229 VASACAGLGSLEYAKGLHAYVEKVGLEG-ELIVKNSLIDMYGKCGSIELARGLF--GLMP 285
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS-----------WRIGEEGLK 250
+K+L SWT +ISG A HG GKEAV F M++ G+ P+ + + +EG+
Sbjct: 286 QKDLHSWTAMISGLASHGHGKEAVALFFSMKEAGVLPDSTTFVVVLSACSHAGLVDEGIS 345
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
F+ M E +V PDIKHYGC++D+ RAG + + + +P
Sbjct: 346 IFNSMENEYKVTPDIKHYGCMVDLFSRAGLIARGYQFIESMP 387
>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330 [Vitis vinifera]
Length = 1008
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 158/301 (52%), Gaps = 23/301 (7%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P F+ T+S + +LS LG Q+H KVG +V +L DMY G ++ +S
Sbjct: 516 PAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKAS 575
Query: 80 KLFDELPERNLV-----TWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134
+F LP+ + + + + + V W+ ++ GY + R +AL F M C E
Sbjct: 576 VIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKTFSFMI-CSQVEV 634
Query: 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
+ T+ +V+ A G + + +HGY +K G + D+ + + +ID Y KCG + A +
Sbjct: 635 DKFTLTSVVSACASAGVLELGRQVHGYIQKIG-HGLDVFLGSSIIDMYVKCGSLNDAWLI 693
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG--------- 245
F + + DR N+V WT++ISG A+HG G+EAV FE M G+ PN +G
Sbjct: 694 F-NQAKDR-NVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAG 751
Query: 246 --EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE-VASGIPSQITNVVVWR 302
EEG K+F M E + P +H+ C++D+ RAGRL + +E + + S++++ VWR
Sbjct: 752 LLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSS--VWR 809
Query: 303 T 303
+
Sbjct: 810 S 810
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 91/197 (46%), Gaps = 14/197 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT + ++ C + LG Q+H K+G V++ +++ DMYV G L D+ +F
Sbjct: 635 DKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIF 694
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++ +RN+V WT +I G + + EA+ LF M E P+E++ + V
Sbjct: 695 NQAKDRNVVL----------WTSMISGCALHGQGREAVRLFELMIN-EGITPNEVSFVGV 743
Query: 143 LPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G + C+ E G H + C++D Y + G + + + ++
Sbjct: 744 LTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFT-CMVDLYGRAGRLNEIKEFIHNNAIS 802
Query: 202 RKNLVSWTTIISGFAMH 218
+ + V W + +S +H
Sbjct: 803 KLSSV-WRSFLSSCRVH 818
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 117/236 (49%), Gaps = 34/236 (14%)
Query: 19 PPL-FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSK---VGFQSHVYVNTALGDMYVSLGF 74
PPL + S T+S +++YPN LHA K VG + + +N +Y
Sbjct: 289 PPLXYFSSTFS------DSMNYPN-SEVLHAKLIKNGCVGIRGNHLLN-----LYAKSQN 336
Query: 75 LKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134
L+ + K+F+E+P+ ++ +W V+I+ G++R+ S + L LF +M + P
Sbjct: 337 LEQAHKMFEEIPQTDVFSWTVLIS----------GFARIGLSADVLGLFTKMQD-QGVCP 385
Query: 135 SEITILAVLPAIWKN-GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASK 193
++ T+ VL + N + R + IHG+ + G + D ++N ++D Y KC C A K
Sbjct: 386 NQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLD-LDAVLNNSILDYYVKCRCFGYAEK 444
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGL 249
LF + K+ VSW ++S + G +++V+ F ++ K SW +GL
Sbjct: 445 LF--GLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPG---KDAASWNTMIDGL 495
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 107/248 (43%), Gaps = 45/248 (18%)
Query: 23 DSFTYSFLIRTCVT-LSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
+ FT S ++++C + ++ +G +H + G +N ++ D YV + KL
Sbjct: 386 NQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKL 445
Query: 82 FDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEAL 120
F + E++ V+WN++++ ++ W +IDG R AL
Sbjct: 446 FGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVAL 505
Query: 121 ALFRRMAAC----EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN 176
L +M A S +LA ++ G+ + Q++ GF V N
Sbjct: 506 ELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGF------VRN 559
Query: 177 CLIDTYAKCGCIFSASKLFE-----------DTSVDRKNL--VSWTTIISGFAMHGMGKE 223
LID Y KCG + AS +F+ + S D + VSW++++SG+ +G ++
Sbjct: 560 SLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFED 619
Query: 224 AVENFERM 231
A++ F M
Sbjct: 620 ALKTFSFM 627
>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g68930
gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 743
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 140/282 (49%), Gaps = 25/282 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D + + ++ C L N G Q+HA + FQ H+YV +AL DMY L + +
Sbjct: 268 MDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTV 327
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + ++N+V+ WT ++ GY + R+ EA+ +F M +P T+
Sbjct: 328 FDRMKQKNVVS----------WTAMVVGYGQTGRAEEAVKIFLDMQRSG-IDPDHYTLGQ 376
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+ A + HG G + + VSN L+ Y KCG I +++LF + +V
Sbjct: 377 AISACANVSSLEEGSQFHGKAITSGLIHY-VTVSNSLVTLYGKCGDIDDSTRLFNEMNV- 434
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
++ VSWT ++S +A G E ++ F++M + GLKP+ G E+G +
Sbjct: 435 -RDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQR 493
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+F M E ++P I HY C+ID+ R+GRLE+A +G+P
Sbjct: 494 YFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMP 535
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 116/230 (50%), Gaps = 24/230 (10%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
+++ + + +LG Q+H K+GF+S++ V + L MY ++G + D+ K+F L +RN
Sbjct: 145 MLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRN 204
Query: 90 LVTWNVIITGL--------------------VKWTGIIDGYSRMNRSNEALALFRRMAAC 129
V +N ++ GL V W +I G ++ + EA+ FR M
Sbjct: 205 TVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKV- 263
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
+ + + +VLPA G + + IH + F I+V + LID Y KC C+
Sbjct: 264 QGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDH-IYVGSALIDMYCKCKCLH 322
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
A +F+ + +KN+VSWT ++ G+ G +EAV+ F MQ+ G+ P+
Sbjct: 323 YAKTVFD--RMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPD 370
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 41/201 (20%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y G + + F++LP+R+ VTWNV +I+GYS A+ + M
Sbjct: 82 YSKAGLISEMESTFEKLPDRDGVTWNV----------LIEGYSLSGLVGAAVKAYNTMMR 131
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
+ +T++ +L NG V + IHG K GF ++ + V + L+ YA GCI
Sbjct: 132 DFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESY-LLVGSPLLYMYANVGCI 190
Query: 189 FSASKLFEDTSVDR-----------------------------KNLVSWTTIISGFAMHG 219
A K+F DR K+ VSW +I G A +G
Sbjct: 191 SDAKKVFYGLD-DRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNG 249
Query: 220 MGKEAVENFERMQKVGLKPNR 240
+ KEA+E F M+ GLK ++
Sbjct: 250 LAKEAIECFREMKVQGLKMDQ 270
>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
Length = 671
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 156/293 (53%), Gaps = 30/293 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D TY ++ C LG Q+H+ GF S++ + AL D+Y G ++ + LF
Sbjct: 195 DESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLF 254
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
L +++++WN +I GY+ MN EAL LF+ M T P+++T+L+V
Sbjct: 255 QGLSYKDVISWNTLI----------GGYTHMNLYKEALLLFQEMLRSGET-PNDVTMLSV 303
Query: 143 LPAIWKNGEVRNCQLIHGYGEKR---GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
LPA G + + IH Y +KR NA + S LID YAKCG I +A ++F S
Sbjct: 304 LPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTS--LIDMYAKCGDIEAAHQVF--NS 359
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
+ K+L SW +I GFAMHG + + F RM+K+G++P+ +G + G
Sbjct: 360 MLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLG 419
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F M ++ ++ P ++HYGC+ID+L +G ++AEE+ + + + + V+W
Sbjct: 420 RHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEME-PDGVIW 471
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 123/240 (51%), Gaps = 25/240 (10%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L +S+T+ FL+++C G Q+H K+GF +YV+T+L MYV L+D+ K
Sbjct: 61 LPNSYTFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYK 120
Query: 81 LFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEA 119
+FD R++V++ +ITG +V W +I GY+ EA
Sbjct: 121 VFDRSSHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEA 180
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
L LF M P E T + VL A +G + + +H + + GF++ ++ + N LI
Sbjct: 181 LELFEEMMKMN-VRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDS-NLKIVNALI 238
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D Y+KCG + +A LF+ S K+++SW T+I G+ + KEA+ F+ M + G PN
Sbjct: 239 DLYSKCGEVETACGLFQGLSY--KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 296
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/295 (25%), Positives = 120/295 (40%), Gaps = 54/295 (18%)
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
S FD LP V + + W +I G++ + +L L+ M + P+ T
Sbjct: 8 SPHFDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLL-PNSYT 66
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY---------------- 182
+L + K+ Q IHG K GF+ D++V LI Y
Sbjct: 67 FPFLLKSCAKSKTFTEGQQIHGQVLKLGFD-LDLYVHTSLISMYVQNWRLEDAYKVFDRS 125
Query: 183 ---------------AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVEN 227
A G I SA KLF++ V K++VSW +ISG+A G KEA+E
Sbjct: 126 SHRDVVSYTALITGYASRGDIRSAQKLFDEIPV--KDVVSWNAMISGYAETGCYKEALEL 183
Query: 228 FERMQKVGLKPNRSWRI----------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILER 277
FE M K+ ++P+ S + E + V++ ++K LID+ +
Sbjct: 184 FEEMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSK 243
Query: 278 AGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAAL 332
G +E A + G+ + +V+ W T LI Y + + L + L F L
Sbjct: 244 CGEVETACGLFQGLSYK--DVISWNT-----LIGGY--THMNLYKEALLLFQEML 289
>gi|255568478|ref|XP_002525213.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535510|gb|EEF37179.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 501
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/312 (31%), Positives = 163/312 (52%), Gaps = 37/312 (11%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G Q H + GF S+ YV ++L +Y G L ++ KLF E+P RN+VT
Sbjct: 125 GIQFHCLAITSGFISNSYVGSSLITLYGKCGKLDNAHKLFHEMPVRNVVT---------- 174
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEV-----RNCQL 157
WT II G+++ + + L LF M +P++ T ++L A +G + +CQ+
Sbjct: 175 WTAIISGFAQECQVDVCLELFSVMRNSTL-KPNDFTFTSLLSACTGSGALGQGTSAHCQI 233
Query: 158 IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAM 217
I + GF+++ +HV+N LI Y K G + A +F + + K++VSW ++ISG+A
Sbjct: 234 I-----QMGFHSY-LHVANALISMYCKSGSVHDAFYIFNN--IYSKDIVSWNSMISGYAQ 285
Query: 218 HGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIK 266
HG+ +A++ FE+M K+G+KP+ +G + G +F+ MVE + P +
Sbjct: 286 HGLAMQAIDLFEKMTKLGVKPDSITFLGVLSACRHAGFVQGGRNYFNSMVEY-HLRPQLD 344
Query: 267 HYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLF 326
HY CL+D+L RAG +E+A ++ +P + N V+W + ++ + I QRL
Sbjct: 345 HYSCLVDLLGRAGLIEEALDIILRMPI-LPNAVIWGSLLSSCRLHGSVWIGIQAAEQRLL 403
Query: 327 FFPAALYALTQI 338
PA Q+
Sbjct: 404 LEPACAATHVQL 415
>gi|20160775|dbj|BAB89716.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
gi|125573261|gb|EAZ14776.1| hypothetical protein OsJ_04704 [Oryza sativa Japonica Group]
Length = 916
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 156/295 (52%), Gaps = 29/295 (9%)
Query: 11 YIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV 70
++HS L P DS T ++ C L +LG +H + K + ++ V AL MY
Sbjct: 562 FMHSTLTLNP--DSITLVSVLSVCGNLKLQSLGKSIHCMALKRLIEFNLRVKNALLTMYF 619
Query: 71 SLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE 130
G + + +F L RNL +WN +I+G + +NE L F+ E
Sbjct: 620 RFGDTESAELIFSSLVGRNLCSWNCMISGFAQ-------------NNEGLRAFQFYKKME 666
Query: 131 YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190
EP+EI+I+ ++ A + G++R + IHG+ + G ++ +S L+D Y+KCG +
Sbjct: 667 DFEPNEISIVGIICACTQLGDLRQGKNIHGHVVRFGLQT-NVFISASLVDMYSKCGRLDI 725
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG----- 245
+ ++FE ++ K++ W ++IS F HG+G +++E F +M G+K RS I
Sbjct: 726 SIRVFESSA--EKSIACWNSMISAFGFHGLGLKSIEIFWKMNNSGVKATRSTFIALLSAC 783
Query: 246 ------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
+EGLK++ M+E ++P +H+ C++D+L RAGRL++A + +PS+
Sbjct: 784 SHSGLTDEGLKYYHLMIEHFGIIPTPEHHVCVVDMLGRAGRLQEAHKFVESLPSK 838
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 111/218 (50%), Gaps = 17/218 (7%)
Query: 23 DSFTYSFLIRTCVTL-SYPNLGTQLHAVFSKVGFQSHVY-VNTALGDMYVSLGFLKDSSK 80
D + S ++ C L + G +H+ K+G++ V +L Y LGF + + +
Sbjct: 264 DEVSLSCVLSACSHLKDLFSFGESVHSSVIKLGYEDTTSSVANSLITFYYELGFPEAAEE 323
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F +NLVTWN +I GLV+ +R NEA+ +F+ M + +P T++
Sbjct: 324 VFLSTSNKNLVTWNAMIKGLVE----------NDRVNEAMCMFQEMRS--KNQPDVATLV 371
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
++ A +G + + +HGY K+G + V N L+D Y KC +A LF ++
Sbjct: 372 TIISACGDHGLLPEGKEVHGYIIKKGHIYEECSVGNSLLDLYMKCNDPSTARILFR--TM 429
Query: 201 DRKNLVSWTTIISGFAMH-GMGKEAVENFERMQKVGLK 237
++L+SW T+ISG++ + +G+EA F+ + GL
Sbjct: 430 PMRDLISWNTMISGYSRNDSLGEEAKAMFKGLLSEGLS 467
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 76/319 (23%), Positives = 141/319 (44%), Gaps = 53/319 (16%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL-PER 88
+I +C N G +H+ K GF + V +L MY+ G + L + + P
Sbjct: 476 VIPSCFCPQDLNFGKSVHSFILKYGFLTGVSAANSLIHMYICCGDSLAAFSLLESITPIS 535
Query: 89 NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148
++++WN I G V+ G+ +AL F+ M + P IT+++VL ++
Sbjct: 536 DIISWNTAIVGCVQ-NGLY---------GDALEAFQFMHSTLTLNPDSITLVSVL-SVCG 584
Query: 149 NGEVRNC-QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
N ++++ + IH KR F++ V N L+ Y + G SA +F +S+ +NL S
Sbjct: 585 NLKLQSLGKSIHCMALKR-LIEFNLRVKNALLTMYFRFGDTESAELIF--SSLVGRNLCS 641
Query: 208 WTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKH 267
W +ISGFA + G A + +++M+ +PN +G ++ C L D++
Sbjct: 642 WNCMISGFAQNNEGLRAFQFYKKMED--FEPNEISIVG---------IICACTQLGDLRQ 690
Query: 268 -------------------YGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRL 308
L+D+ + GRL+ + V S ++ W +
Sbjct: 691 GKNIHGHVVRFGLQTNVFISASLVDMYSKCGRLDISIRVFES--SAEKSIACWNS----- 743
Query: 309 LINSYFFSPITLNSQRLFF 327
+I+++ F + L S +F+
Sbjct: 744 MISAFGFHGLGLKSIEIFW 762
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 14/192 (7%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G H + K + + + L DMY G S +F +P R+ +WN +++G
Sbjct: 183 GIAFHGMALKRCLDTDLSLWNTLMDMYAKCGDFYSSEVVFQRMPYRDTTSWNSMVSG--- 239
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRN-CQLIHGY 161
+ +G + ++ F+ M + + E+++ VL A ++ + + +H
Sbjct: 240 --SLFNGLAEISA-----YYFKEMVRSSF-QADEVSLSCVLSACSHLKDLFSFGESVHSS 291
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
K G+ V+N LI Y + G +A ++F TS KNLV+W +I G +
Sbjct: 292 VIKLGYEDTTSSVANSLITFYYELGFPEAAEEVFLSTS--NKNLVTWNAMIKGLVENDRV 349
Query: 222 KEAVENFERMQK 233
EA+ F+ M+
Sbjct: 350 NEAMCMFQEMRS 361
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 88/196 (44%), Gaps = 16/196 (8%)
Query: 46 LHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTG 105
LH K G V T++ Y + + + ++FDE +L+ WN I+ L
Sbjct: 85 LHCAALKSGAVLDPPVRTSVITAYSRVRDVCSALQVFDEAAAPDLILWNAAISALT---- 140
Query: 106 IIDGYSRMN-RSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
+N R +A+ LFR M S +++ +L + + + HG K
Sbjct: 141 -------LNCRYGDAVVLFRWMVDVLGVIDS-TSMVIMLSGASRARSLEHGIAFHGMALK 192
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
R + D+ + N L+D YAKCG +S+ +F+ + ++ SW +++SG +G+ + +
Sbjct: 193 RCLDT-DLSLWNTLMDMYAKCGDFYSSEVVFQ--RMPYRDTTSWNSMVSGSLFNGLAEIS 249
Query: 225 VENFERMQKVGLKPNR 240
F+ M + + +
Sbjct: 250 AYYFKEMVRSSFQADE 265
>gi|242042081|ref|XP_002468435.1| hypothetical protein SORBIDRAFT_01g045890 [Sorghum bicolor]
gi|241922289|gb|EER95433.1| hypothetical protein SORBIDRAFT_01g045890 [Sorghum bicolor]
Length = 506
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 100/322 (31%), Positives = 167/322 (51%), Gaps = 53/322 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPN-LGTQLHAVFSKVGFQS----HVYVNTALGDMYVSLGFLKD 77
D+FT++F++++C P L + LHA K G S HV+V+ AL Y S + D
Sbjct: 116 DAFTFTFVLKSCSRCHSPGRLPSDLHAQAFKHGCLSARSEHVHVHNALLHAYASRSAVDD 175
Query: 78 SSKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRS 116
+ ++FDE+P R++V+++ ++T +V WT +I Y+R +R
Sbjct: 176 AHRVFDEMPVRDVVSFSGLLTAHLKNNQLDSARMVFDQMPHRDVVSWTAMISAYARASRP 235
Query: 117 NEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN 176
+ALALF M +P E+T+++V+ A G++ + + Y + GF + + + N
Sbjct: 236 QDALALFDAMP----VQPDEVTMVSVVSACTALGDLATGERLRLYVDSNGFG-WMVSLRN 290
Query: 177 CLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM--QKV 234
L+D YAKCGC+ A +LF+ ++ ++L SW T+I +A HG + + F +M
Sbjct: 291 ALMDMYAKCGCLPEARELFDGMAI--RSLASWNTLILAYASHGDEESTIALFHQMLAHDN 348
Query: 235 GLKPNRSWRIG-----------EEGLKFFDKMV--EECEVLPDIKHYGCLIDILERAGRL 281
+KP+ + EEG FD M + +V ++HYGC++D+L RAG L
Sbjct: 349 SVKPDGVTLLAVLTMYAHKGCVEEGRTVFDAMQRGDYGKVELTVEHYGCMVDLLSRAGHL 408
Query: 282 EQAEEVAS--GIPSQITNVVVW 301
E+A ++ IPS N VVW
Sbjct: 409 EEAYKMIEQMSIPS---NDVVW 427
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/277 (25%), Positives = 116/277 (41%), Gaps = 48/277 (17%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76
P+ P D T ++ C L G +L GF V + AL DMY G L
Sbjct: 246 PVQP--DEVTMVSVVSACTALGDLATGERLRLYVDSNGFGWMVSLRNALMDMYAKCGCLP 303
Query: 77 DSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT-EPS 135
++ +LFD + R+L +WN +I Y+ +ALF +M A + + +P
Sbjct: 304 EARELFDGMAIRSLASWNTLIL----------AYASHGDEESTIALFHQMLAHDNSVKPD 353
Query: 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN--CLIDTYAKCGCIFSASK 193
+T+LAVL G V + + ++ + ++ V + C++D ++ G + A K
Sbjct: 354 GVTLLAVLTMYAHKGCVEEGRTVFDAMQRGDYGKVELTVEHYGCMVDLLSRAGHLEEAYK 413
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKPNRSWRIGEEGLK 250
+ E S+ ++V W ++ MHG M ++AV+ L P+ EG
Sbjct: 414 MIEQMSIPSNDVV-WGVLLGACRMHGNIDMAEKAVQKLRI-----LNPH-------EG-- 458
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+Y LID+ AGR +A EV
Sbjct: 459 ---------------GYYILLIDMYTAAGRTAEAMEV 480
>gi|357507205|ref|XP_003623891.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498906|gb|AES80109.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1288
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 155/312 (49%), Gaps = 37/312 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ T ++ C L + + + + VY+ L DMY + + ++F
Sbjct: 895 DAVTMVKVVLACTVLGEWGVVDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVF 954
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
D + +RN+V+WN +I G ++ WT +I YS+ + +A+
Sbjct: 955 DRMRDRNMVSWNAMIMGYGKAGNLVAARKLFDDMPHRDVISWTSMISSYSQAGQFGKAVR 1014
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF+ M + +P EIT+ +VL A G + + +H Y K NA DI+V N LID
Sbjct: 1015 LFQEMMVTK-VKPDEITVASVLSACAHIGALDVGEAVHEYIRKYDVNA-DIYVGNALIDM 1072
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
Y KCG + +FE+ +++ VSWT++I+G A++G A+ F M + G++P
Sbjct: 1073 YCKCGAVEKGLSVFEEMG--KRDSVSWTSVIAGLAVNGSADSALNLFSLMLREGVRPTHG 1130
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+G ++GL++F+ M + P++KHYGC++D+L R+G L +A E
Sbjct: 1131 TFVGVLLACAHAGVVDKGLEYFESMERVYGLTPEMKHYGCVVDLLSRSGNLGRAYEFIKR 1190
Query: 291 IPSQITNVVVWR 302
+P +VVVWR
Sbjct: 1191 MPMD-PDVVVWR 1201
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 87/343 (25%), Positives = 148/343 (43%), Gaps = 66/343 (19%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++ TY FL++ C +S + T +HA K+GF S ++V+ AL Y L + K+F
Sbjct: 795 NNLTYPFLLKACARISNVSC-TTVHARVLKLGFDSDLFVSNALIHGYAGFCELGFARKVF 853
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ ER+LV+WN +I GY R R +E L +F M + + +T++ V
Sbjct: 854 DEMSERDLVSWNSLIC----------GYGRCRRYSEVLVVFEEMRMAD-VKGDAVTMVKV 902
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT--------------------- 181
+ A GE + Y E+ D+++ N LID
Sbjct: 903 VLACTVLGEWGVVDAMIEYIEENKVEV-DVYLGNTLIDMYGRRSMVDLARRVFDRMRDRN 961
Query: 182 ----------YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
Y K G + +A KLF+D + ++++SWT++IS ++ G +AV F+ M
Sbjct: 962 MVSWNAMIMGYGKAGNLVAARKLFDD--MPHRDVISWTSMISSYSQAGQFGKAVRLFQEM 1019
Query: 232 QKVGLKPNR--------------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILER 277
+KP+ + +GE ++ K +V DI LID+ +
Sbjct: 1020 MVTKVKPDEITVASVLSACAHIGALDVGEAVHEYIRKY----DVNADIYVGNALIDMYCK 1075
Query: 278 AGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITL 320
G +E+ V + + + V W + L +N S + L
Sbjct: 1076 CGAVEKGLSVFEEMGKR--DSVSWTSVIAGLAVNGSADSALNL 1116
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 87/198 (43%), Gaps = 14/198 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + ++ C + ++G +H K + +YV AL DMY G ++ +F
Sbjct: 1027 DEITVASVLSACAHIGALDVGEAVHEYIRKYDVNADIYVGNALIDMYCKCGAVEKGLSVF 1086
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+ +R+ V+W +I GL ++G ++ AL LF M E P+ T + V
Sbjct: 1087 EEMGKRDSVSWTSVIAGLA-----VNG-----SADSALNLFSLMLR-EGVRPTHGTFVGV 1135
Query: 143 LPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G V + + G H C++D ++ G + A + + +D
Sbjct: 1136 LLACAHAGVVDKGLEYFESMERVYGLTPEMKHYG-CVVDLLSRSGNLGRAYEFIKRMPMD 1194
Query: 202 RKNLVSWTTIISGFAMHG 219
++V W ++S +HG
Sbjct: 1195 -PDVVVWRILLSASQVHG 1211
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 111/239 (46%), Gaps = 37/239 (15%)
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP--- 134
+++LF ++P L WN++I G +S+ N+ EA+ + M Y++
Sbjct: 749 ANELFRQIPRPTLSHWNIMIRG----------WSQTNQPIEAIRNYNLM----YSQALFG 794
Query: 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
+ +T +L A + V +C +H K GF++ D+ VSN LI YA + A K+
Sbjct: 795 NNLTYPFLLKACARISNV-SCTTVHARVLKLGFDS-DLFVSNALIHGYAGFCELGFARKV 852
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI---------G 245
F++ S ++LVSW ++I G+ E + FE M+ +K + + G
Sbjct: 853 FDEMS--ERDLVSWNSLICGYGRCRRYSEVLVVFEEMRMADVKGDAVTMVKVVLACTVLG 910
Query: 246 EEGLKFFDKM---VEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
E G+ D M +EE +V D+ LID+ R ++ A V + + N+V W
Sbjct: 911 EWGV--VDAMIEYIEENKVEVDVYLGNTLIDMYGRRSMVDLARRVFDRMRDR--NMVSW 965
>gi|225445484|ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 533
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 163/331 (49%), Gaps = 52/331 (15%)
Query: 3 VYKQLQQIYIHSHSPLPP------------LFDSFTYSFLIRTCVTLSYPN--LGTQLHA 48
+Y + + Y+ SHSP L +++T+ LI+ C TL + +G +HA
Sbjct: 79 MYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTLGSSSKLIGCLVHA 138
Query: 49 VFSKVGFQSHVYVNTALGDMYVSLGF-LKDSSKLFDELPERNLVTWNVIITG-------- 99
GF +V +AL + Y SL F + + LFD +P R++V W +I G
Sbjct: 139 HVVTFGFDEDPFVVSALIEFY-SLNFDMGTARTLFDRIPNRDVVLWTAMIDGYGKMGDVE 197
Query: 100 -------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI 146
+ W+ ++ YSR+ E L LFRRM T P+E +++VL A
Sbjct: 198 HARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAG-TMPNESVLVSVLTAC 256
Query: 147 WKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLV 206
G + +H Y ++ F++ I ++ L+D Y+KCGC+ SA F+ + K+
Sbjct: 257 AHLGALAQGLWVHSYAKQCNFDSNPI-LATALVDMYSKCGCVESALSTFQ--GIPNKDAG 313
Query: 207 SWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS-----------WRIGEEGLKFFDKM 255
+W +ISG AM+G +++E F +M G +P + R+ +EGLK F++M
Sbjct: 314 AWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVLTACTHARLVKEGLKLFEQM 373
Query: 256 VEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
V P ++HY CL+D++ RAG L +AE+
Sbjct: 374 SSNYGVEPQLEHYACLVDLMARAGMLAEAEK 404
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
D+ + +ID Y K G + A LFED + +N +SW+ +++ ++ G KE + F R
Sbjct: 179 DVVLWTAMIDGYGKMGDVEHARILFED--MPERNAISWSAVMAAYSRVGDFKEVLCLFRR 236
Query: 231 MQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
MQ+ G PN S + +GL + ++C + L+D+ + G
Sbjct: 237 MQEAGTMPNESVLVSVLTACAHLGALAQGL-WVHSYAKQCNFDSNPILATALVDMYSKCG 295
Query: 280 RLEQAEEVASGIPSQ 294
+E A GIP++
Sbjct: 296 CVESALSTFQGIPNK 310
>gi|147833682|emb|CAN62088.1| hypothetical protein VITISV_030648 [Vitis vinifera]
Length = 583
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 155/295 (52%), Gaps = 29/295 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ F+++ C L + G Q+HA K+GF S VY+N +L Y + L + +F
Sbjct: 127 DKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSBVYINNSLVHFYATCDRLDFAKGVF 186
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + ER+LV+WNV +ID + R + AL LF M ++ EP TI ++
Sbjct: 187 DRMSERSLVSWNV----------VIDAFVRFGEFDAALNLFGEMQ--KFFEPDGYTIQSI 234
Query: 143 LPAIWKNGEVRNCQLIHGYGEKR--GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
A G + H + K+ D+ ++ L+D Y KCG + A +LF +
Sbjct: 235 ANACAGMGSLSLGMWAHVFLLKKXDADRVNDVLLNTSLVDMYCKCGSLELALQLFH--RM 292
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNRSWRIG-----------EEG 248
++++ SW ++I GF+ HG A+E F M + L PN +G EG
Sbjct: 293 PKRDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEG 352
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++FD MV E ++ P+++HYGCL+D+L RAG +++A +V S +P + ++V+WR+
Sbjct: 353 RRYFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMR-PDLVIWRS 406
>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
bursa-pastoris]
Length = 706
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 158/293 (53%), Gaps = 30/293 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ C + LG Q+H+ GF S++ + AL D+Y+ G ++ +S LF
Sbjct: 234 DESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLF 293
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ L +++++WN +I GY+ MN EAL LF+ M + P+E+T+L++
Sbjct: 294 EGLSYKDVISWNTLI----------GGYTHMNLYKEALLLFQEMLRSGES-PNEVTMLSI 342
Query: 143 LPAIWKNGEVRNCQLIHGYGEKR--GF-NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
LPA G + + IH Y +KR G N + S LID YAKCG I +A ++F+ S
Sbjct: 343 LPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTS--LIDMYAKCGDIEAAQQVFD--S 398
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
+ ++L SW +I GFAMHG A + F RM+K G++P+ +G + G
Sbjct: 399 MLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLG 458
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F M E+ ++ P ++HYGC+ID+L +G ++AEE+ + + + V+W
Sbjct: 459 RHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINSMEMD-PDGVIW 510
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/300 (28%), Positives = 144/300 (48%), Gaps = 41/300 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S+T+ FL++ C G Q+H K+G +YV+T+L MYV G +D+ K+F
Sbjct: 102 NSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVF 161
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
D+ R++V++ +I G +V W +I GY+ EAL
Sbjct: 162 DQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALE 221
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF+ M +P E T++ VL A ++ + + +H + + GF + ++ + N LID
Sbjct: 222 LFKEMMKTN-VKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGS-NLKIVNALIDL 279
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR- 240
Y KCG + +AS LFE S K+++SW T+I G+ + KEA+ F+ M + G PN
Sbjct: 280 YIKCGEVETASGLFEGLSY--KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEV 337
Query: 241 -------------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ IG + DK ++ ++ LID+ + G +E A++V
Sbjct: 338 TMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLR--TSLIDMYAKCGDIEAAQQV 395
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 85/345 (24%), Positives = 138/345 (40%), Gaps = 66/345 (19%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV---SLGFLKDSSKLFDELP 86
L+ C TL + +HA K G + Y + L + V L + +FD +
Sbjct: 8 LLHNCKTLQSLRI---IHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQ 64
Query: 87 ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI 146
E NL+ WN + G++ + AL L+ M + P+ T +L A
Sbjct: 65 EPNLLIWNTMFR----------GHALSSDPVSALYLYVCMISLGLV-PNSYTFPFLLKAC 113
Query: 147 WKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS------- 199
K+ R Q IHG+ K G + D++V LI Y K G A K+F+ +S
Sbjct: 114 AKSKAFREGQQIHGHVLKLGCD-LDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSY 172
Query: 200 ----------------------VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
+ K++VSW +ISG+A G KEA+E F+ M K +K
Sbjct: 173 TALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVK 232
Query: 238 PNRSWRI----------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
P+ S + E + +++ ++K LID+ + G +E A +
Sbjct: 233 PDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGL 292
Query: 288 ASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAAL 332
G+ + +V+ W T LI Y + + L + L F L
Sbjct: 293 FEGLSYK--DVISWNT-----LIGGY--THMNLYKEALLLFQEML 328
>gi|186478293|ref|NP_172391.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099767|sp|O80488.1|PPR23_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09190
gi|3249103|gb|AAC24086.1| Contains similarity to membrane-associated salt-inducible protein
homolog TM021B04.10 gb|2191192 from A. thaliana BAC
gb|AF007271 [Arabidopsis thaliana]
gi|28393182|gb|AAO42022.1| unknown protein [Arabidopsis thaliana]
gi|332190289|gb|AEE28410.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 484
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 155/312 (49%), Gaps = 37/312 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +TY+ L+++C +LS G +H + GF + + ++Y S G + D+ K+F
Sbjct: 101 DEYTYAPLLKSCSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVF 160
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
DE+ ERN+V WN++I G +V W +I S+ R EAL
Sbjct: 161 DEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALE 220
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M + +P E T++ VLP G + + IH E G I V N L+D
Sbjct: 221 LFCEMIDQGF-DPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDFITVGNALVDF 279
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-LKPNR 240
Y K G + +A+ +F + R+N+VSW T+ISG A++G G+ ++ F+ M + G + PN
Sbjct: 280 YCKSGDLEAATAIFR--KMQRRNVVSWNTLISGSAVNGKGEFGIDLFDAMIEEGKVAPNE 337
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
+ +G E G + F M+E ++ +HYG ++D++ R+GR+ +A +
Sbjct: 338 ATFLGVLACCSYTGQVERGEELFGLMMERFKLEARTEHYGAMVDLMSRSGRITEAFKFLK 397
Query: 290 GIPSQITNVVVW 301
+P N +W
Sbjct: 398 NMPVN-ANAAMW 408
>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
Length = 694
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/297 (32%), Positives = 148/297 (49%), Gaps = 37/297 (12%)
Query: 19 PPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
P D FT+ FLI+ L G H + KV S V++ +L Y G L
Sbjct: 131 PDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLG 190
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
++F P R++V+WN +IT V+ EAL LF+ M + +P+ IT
Sbjct: 191 YRVFVNXPRRDVVSWNSMITAFVQG----------GCPEEALELFQEMET-QNVKPNGIT 239
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
++ VL A K + + +H Y E+ + +SN ++D Y KCG + A +LF+
Sbjct: 240 MVGVLSACAKKSDFEFGRWVHSYIERNRIXE-SLTLSNAMLDMYTKCGSVEDAKRLFD-- 296
Query: 199 SVDRKNLVSWTTIISGFA------------MHGMGKEAVENFERMQKVGLKPNR------ 240
+ K++VSWTT++ G+A MHG GK+A+ F +MQ+ +KPN
Sbjct: 297 KMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNI 356
Query: 241 ---SWRIG--EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+G EEG FF++M VLP +KHY C++DIL RAG LE+A E+ +P
Sbjct: 357 LCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMP 413
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/274 (23%), Positives = 124/274 (45%), Gaps = 33/274 (12%)
Query: 45 QLHAVFSKVG-----FQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG 99
Q+HA + G F + + A + SL + + ++FD++P NL TWN +I
Sbjct: 53 QIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDY---AQQVFDQIPHPNLYTWNTLIR- 108
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
Y+ + +++L +F RM P + T ++ A + E+ + H
Sbjct: 109 ---------AYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFH 159
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
G K + D+ + N LI YAKCG + ++F + R+++VSW ++I+ F G
Sbjct: 160 GMVIKVLLGS-DVFILNSLIHFYAKCGELGLGYRVF--VNXPRRDVVSWNSMITAFVQGG 216
Query: 220 MGKEAVENFERMQKVGLKPNRSWRIGE----------EGLKFFDKMVEECEVLPDIKHYG 269
+EA+E F+ M+ +KPN +G E ++ +E + +
Sbjct: 217 CPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSN 276
Query: 270 CLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++D+ + G +E A+ + +P + ++V W T
Sbjct: 277 AMLDMYTKCGSVEDAKRLFDKMPEK--DIVSWTT 308
>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g22410, mitochondrial-like [Cucumis sativus]
Length = 681
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 151/315 (47%), Gaps = 37/315 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ L LG +LH ++G V + AL DMY+ ++ + LF
Sbjct: 255 DEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILF 314
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
+ + ++ +V+W ++ G K W +I G+ + RS EALA
Sbjct: 315 ENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALA 374
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M A P +IT++ L A + G + +H Y +K ++ + L+D
Sbjct: 375 LFHEMQASS-VAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLT-MNVALGTALVDM 432
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG I A ++FE+ + +N ++WT II G A+HG A+ F M +GL P+
Sbjct: 433 YAKCGNIKKAIQVFEE--MPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEI 490
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
IG ++G +F +M + + P +KHY CL+D+L RAG LE+AEE+
Sbjct: 491 TFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRS 550
Query: 291 IPSQITNVVVWRTGF 305
+P + + VVW F
Sbjct: 551 MPFE-PDAVVWGALF 564
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 112/212 (52%), Gaps = 20/212 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++TY L + C S ++ ++GF S ++V+ A+ + VS G L + KLF
Sbjct: 154 DNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLF 213
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE R+LV+WN II+GY R ++EA L+ +M P E+T++ V
Sbjct: 214 DESCVRDLVSWN----------SIINGYVRCGLADEAFDLYYKMGELNVM-PDEVTMIGV 262
Query: 143 LPAIWKNGEVRNCQL---IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+ A + ++ N L +H E+ G N + ++N L+D Y KC I +A LFE+ +
Sbjct: 263 VSA---SAQLENLALGRKLHQSIEEMGLN-LTVPLANALMDMYIKCKNIEAAKILFENMT 318
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
+K +VSWTT++ G+A G+ + AV F M
Sbjct: 319 --KKTVVSWTTMVIGYAKFGLLESAVRLFNEM 348
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 89/210 (42%), Gaps = 17/210 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + C L ++G +H K +V + TAL DMY G +K + ++F
Sbjct: 387 DKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVF 446
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+P RN +TW II GL + + + A++ F M + P EIT + V
Sbjct: 447 EEMPGRNSLTWTAIICGL----------ALHGQPHAAISYFSEMISIGLV-PDEITFIGV 495
Query: 143 LPAIWKNGEVRNCQ-LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G V + + K G + H S CL+D + G + A +L +
Sbjct: 496 LSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYS-CLVDLLGRAGFLEEAEELIRSMPFE 554
Query: 202 RKNLVSWTTIISGFAMHG---MGKEAVENF 228
+ V W + G +HG MG+ A
Sbjct: 555 -PDAVVWGALFFGSRIHGNVHMGERAASKL 583
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 19/169 (11%)
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDG---YSRMNRSNEALALFRRMAACEYTEPSE 136
K+ + N +WN+ I G V+ I+ Y M R A+ YT P
Sbjct: 109 KILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIP-------DNYTYPLL 161
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
+ A W E I G+ + GF++ D+ V N +I CG + +A KLF+
Sbjct: 162 FKVCAGFSLSWTANE------ILGHVIQLGFDS-DLFVHNAIIHVLVSCGELLAARKLFD 214
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG 245
++ V ++LVSW +II+G+ G+ EA + + +M ++ + P+ IG
Sbjct: 215 ESCV--RDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIG 261
>gi|326518042|dbj|BAK07273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 527
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/303 (32%), Positives = 150/303 (49%), Gaps = 39/303 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKV-GFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D T + C +LG ++HA V GF + V AL DMYV G L+++ L
Sbjct: 146 DRVTLLTALTACSRAGDLSLGRKIHAYMDGVTGFS--LPVANALLDMYVKNGCLEEAVNL 203
Query: 82 FDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEAL 120
F+++P RN+V+W +++G L+ WT +I+ Y + EAL
Sbjct: 204 FEKMPSRNVVSWTTLVSGYAFAGQVDKARLLFHQCTEKDLIMWTAMINAYVQHGCFIEAL 263
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
+LFR M EP T++ +L G + QLIH + E R D + LID
Sbjct: 264 SLFRDMQM-HQIEPDRFTVVTLLTCCANLGALDQGQLIHQFAEGRNMK-LDAVLGTALID 321
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
YAKCG + + ++FE ++ ++ +WT II G A +G A+E FE M++ KP+
Sbjct: 322 MYAKCGHVEKSVEVFE--RMEGRDTKAWTAIICGLATNGQAGRALELFEDMERSEAKPDS 379
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
IG +EG K F M E + P ++HY CL+++L RAG+L++AE++
Sbjct: 380 VTFIGVLSACCHGGLVDEGRKQFRAMKEVYRIRPRVEHYSCLVNLLGRAGQLDEAEKLIK 439
Query: 290 GIP 292
IP
Sbjct: 440 SIP 442
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 109/202 (53%), Gaps = 15/202 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DSFTY F++R L G + HA K GF+ Y ++L DMY LG L+ + K+F
Sbjct: 45 DSFTYPFVLRAIGALQISVEGRKAHAATLKTGFRWDAYTASSLMDMYTMLGRLEAARKVF 104
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+P+R +V WN+++ Y R R+ EA+AL M T P +T+L
Sbjct: 105 DEMPQRAVVVWNMMLR----------CYVRCGRNTEAVALAEEMERGRLT-PDRVTLLTA 153
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + G++ + IH Y + G F + V+N L+D Y K GC+ A LFE +
Sbjct: 154 LTACSRAGDLSLGRKIHAYMD--GVTGFSLPVANALLDMYVKNGCLEEAVNLFE--KMPS 209
Query: 203 KNLVSWTTIISGFAMHGMGKEA 224
+N+VSWTT++SG+A G +A
Sbjct: 210 RNVVSWTTLVSGYAFAGQVDKA 231
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 20/178 (11%)
Query: 159 HGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218
H K GF +D + ++ L+D Y G + +A K+F++ + ++ +V W ++ +
Sbjct: 69 HAATLKTGFR-WDAYTASSLMDMYTMLGRLEAARKVFDE--MPQRAVVVWNMMLRCYVRC 125
Query: 219 GMGKEAVENFERMQKVGLKPNR---------SWRIGEEGLKFFDKMVEECEVLPDIKHYG 269
G EAV E M++ L P+R R G+ L + +
Sbjct: 126 GRNTEAVALAEEMERGRLTPDRVTLLTALTACSRAGDLSLGRKIHAYMDGVTGFSLPVAN 185
Query: 270 CLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLFF 327
L+D+ + G LE+A + +PS+ NVV W T L++ Y F+ ++ RL F
Sbjct: 186 ALLDMYVKNGCLEEAVNLFEKMPSR--NVVSWTT-----LVSGYAFAG-QVDKARLLF 235
>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata]
gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
lyrata]
Length = 886
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 146/304 (48%), Gaps = 34/304 (11%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L +S T + ++ CV + +H K G +V AL DMY LG + + +
Sbjct: 398 LANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKR 457
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT-------- 132
+F ++ +R+LVTWN IIT GY R +AL + +M E
Sbjct: 458 IFGKMEDRDLVTWNTIIT----------GYVFSERHEDALLMLHKMQILERKASERASRV 507
Query: 133 --EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190
+P+ IT++ +LP+ + + IH Y K A D+ V + L+D YAKCGC+
Sbjct: 508 SLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNL-ATDVAVGSALVDMYAKCGCLQM 566
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG----- 245
+ K+F+ + +N+++W I+ + MHG ++A++ M G+KPN I
Sbjct: 567 SRKVFDQIPI--RNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAAC 624
Query: 246 ------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVV 299
EGLK F M ++ V P HY C++D+L RAGR+++A ++ + IP
Sbjct: 625 SHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAG 684
Query: 300 VWRT 303
W +
Sbjct: 685 AWSS 688
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 136/302 (45%), Gaps = 39/302 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVSLGFLKDSSKL 81
D FT S ++ C L G +LHA K G + +V +AL DMY + + ++
Sbjct: 297 DGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRV 356
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + +R + WN +ITG Y++ EAL LF M + T+
Sbjct: 357 FDGMFDRKIGLWNAMITG----------YAQNEYDEEALLLFIEMEESAGLLANSTTMAG 406
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
V+PA ++G + IHG+ KRG + D V N L+D Y++ G I A ++F ++
Sbjct: 407 VVPACVRSGAFSKKEAIHGFVVKRGLDR-DRFVQNALMDMYSRLGKIDIAKRIF--GKME 463
Query: 202 RKNLVSWTTIISGFA-----------MHGMGKEAVENFERMQKVGLKPNR---------- 240
++LV+W TII+G+ +H M + ER +V LKPN
Sbjct: 464 DRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSC 523
Query: 241 -SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVV 299
+ +G + ++ + D+ L+D+ + G L+ + +V IP I NV+
Sbjct: 524 AALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP--IRNVI 580
Query: 300 VW 301
W
Sbjct: 581 TW 582
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/276 (24%), Positives = 119/276 (43%), Gaps = 45/276 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S T ++ +C LS G ++HA K + V V +AL DMY G L+ S K+F
Sbjct: 512 NSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVF 571
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++P RN++TWNVI+ Y S +A+ + R M + +P+E+T ++V
Sbjct: 572 DQIPIRNVITWNVIVM----------AYGMHGNSQDAIDMLRMMMV-QGVKPNEVTFISV 620
Query: 143 LPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
A +G V ++ + + G H + C++D + G + A +L +
Sbjct: 621 FAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYA-CVVDLLGRAGRVKEAYQLINLIPRN 679
Query: 202 RKNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEE 258
+W++++ +H +G+ A +N + L+PN +
Sbjct: 680 FDKAGAWSSLLGACRIHNNLEIGEIAAQNL-----IQLEPNVA----------------- 717
Query: 259 CEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
HY L +I AG +A EV + +Q
Sbjct: 718 -------SHYVLLANIYSSAGLWYKATEVRRNMKAQ 746
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 83/310 (26%), Positives = 133/310 (42%), Gaps = 41/310 (13%)
Query: 24 SFTYSFLIRTCVTLSYPN---LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
SFT + C P +G Q+HA + G + +NT + MY +G L S
Sbjct: 195 SFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFIINTLVA-MYGKMGKLASSKV 253
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
L R+LVTWN +++ L + + EAL R M E EP TI
Sbjct: 254 LLGSFEGRDLVTWNTVLSSLCQNEQFL----------EALEYLREMV-LEGVEPDGFTIS 302
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+VLPA +R + +H Y K G + V + L+D Y C + S ++F D
Sbjct: 303 SVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVF-DGMF 361
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQK-VGLKPNRSWRIG-------------E 246
DRK + W +I+G+A + +EA+ F M++ GL N + G +
Sbjct: 362 DRK-IGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKK 420
Query: 247 EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFL 306
E + F V + + D L+D+ R G+++ A+ + + + ++V W T
Sbjct: 421 EAIHGF---VVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDR--DLVTWNT--- 472
Query: 307 RLLINSYFFS 316
+I Y FS
Sbjct: 473 --IITGYVFS 480
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 105/223 (47%), Gaps = 23/223 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQ-SHVYVNTALGDMYVSLGFLKDSSKL 81
D+F + L++ L +LG Q+HA K G+ V V L ++Y G K+
Sbjct: 92 DNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKV 151
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + ERN V+WN +I+ L + + AL FR M E EPS T+++
Sbjct: 152 FDRISERNQVSWNSLISSLCSF----------EKWEMALEAFRCMLD-EDVEPSSFTLVS 200
Query: 142 VLPAI----WKNGEVRNCQLIHGYGEKRG-FNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
V A G + Q +H YG ++G N+F I N L+ Y K G + S+ L
Sbjct: 201 VALACSNFPMPEGLLMGKQ-VHAYGLRKGELNSFII---NTLVAMYGKMGKLASSKVLL- 255
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
S + ++LV+W T++S + EA+E M G++P+
Sbjct: 256 -GSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPD 297
>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
[Vitis vinifera]
gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
Length = 605
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 157/292 (53%), Gaps = 25/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FTY L++ C L G Q+HA K+G ++ V+V +L MY G + +F
Sbjct: 130 DNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVF 189
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+++ ER++ +W+ +IT ++ + ++ L L M+ Y E +++V
Sbjct: 190 EQMNERSVASWSALIT----------AHASLGMWSDCLRLLGDMSNEGYWRAEESILVSV 239
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + + +HG+ R + ++ V LI+ Y KCG ++ LF+ + +
Sbjct: 240 LSACTHLGALDLGRSVHGF-LLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMA--K 296
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN +S++ +ISG AMHG G+E + F M + GL+P+ +G +EGL+
Sbjct: 297 KNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQC 356
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F++M E + P I+HYGC++D++ RAG++++A E+ +P + N V+WR+
Sbjct: 357 FNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPME-PNDVLWRS 407
>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 627
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/291 (29%), Positives = 165/291 (56%), Gaps = 27/291 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT++ ++ +C+ S LG Q+H + K + SH++V ++L DMY G ++++ ++F
Sbjct: 151 NEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIF 210
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ LPER++V+ T II GY+++ EAL +F+R+ + E P+ +T ++
Sbjct: 211 ECLPERDVVS----------CTAIIAGYAQLGLDEEALEMFQRLQS-EGMRPNYVTYASL 259
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A+ + + + H + +R + + + N LID Y+KCG + A +LF++ +
Sbjct: 260 LTALSGLALLDHGKQAHCHVLRRELPFYAV-LQNSLIDMYSKCGNLSYAQRLFDN--MPE 316
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQ-KVGLKPN-----------RSWRIGEEGLK 250
+ +SW ++ G++ HG+G+E +E F M+ + +KP+ ++ + GL
Sbjct: 317 RTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLS 376
Query: 251 FFDKMVE-ECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
+D MV E + PD +HYGC++D+L RAGR+++A E +PS+ T V+
Sbjct: 377 IYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVL 427
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 140/287 (48%), Gaps = 24/287 (8%)
Query: 18 LPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD 77
L P Y L+ C+ G ++HA K + Y+ T L Y L+D
Sbjct: 45 LGPEIGFHCYDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLED 104
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
+ K+ DE+PE+N+V+ WT +I YS+ S+EAL++F M + +P+E
Sbjct: 105 ARKVLDEMPEKNVVS----------WTAMISRYSQTGHSSEALSVFAEMMRSD-GKPNEF 153
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
T VL + + + + IHG K +++ I V + L+D YAK G I A ++FE
Sbjct: 154 TFATVLTSCIRASGLALGKQIHGLIVKWNYDSH-IFVGSSLLDMYAKAGQIEEAREIFE- 211
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN----RSWRIGEEGLKFFD 253
+ +++VS T II+G+A G+ +EA+E F+R+Q G++PN S GL D
Sbjct: 212 -CLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLD 270
Query: 254 KMVE-ECEVL-PDIKHYGC----LIDILERAGRLEQAEEVASGIPSQ 294
+ C VL ++ Y LID+ + G L A+ + +P +
Sbjct: 271 HGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPER 317
>gi|413954745|gb|AFW87394.1| hypothetical protein ZEAMMB73_238054 [Zea mays]
Length = 430
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/306 (29%), Positives = 145/306 (47%), Gaps = 27/306 (8%)
Query: 8 QQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGD 67
+ + + SP+ P + TY+ L++ CV P LG ++HA GF+ YV T L
Sbjct: 21 KAVSLMCRSPVCP--GAGTYALLLQECVNRRDPRLGKRIHARMVATGFRCSAYVATKLLI 78
Query: 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA 127
Y +G L + K+FD +P+R++V WN +I+G + +G A+ LF M
Sbjct: 79 FYAKIGHLGCAQKMFDGMPQRSVVAWNAMISGCARGSG--------EAQERAVELFSAMR 130
Query: 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC 187
A E P + T +VL A + + + + +HG K ++ ++ L+D Y KC C
Sbjct: 131 A-EGLAPDQFTFASVLCACARLAALGHGRRVHGVAVKSDVGG-NVFANSALVDMYLKCSC 188
Query: 188 IFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-------- 239
A ++F + +N+ WT +ISG G EA+ F+RM G +PN
Sbjct: 189 PEDARRVF--AAAPERNVTMWTAVISGHGQQGCVDEALAFFDRMAASGFRPNDVTFLAVL 246
Query: 240 ----RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQI 295
+G EGL+ F M + + P HY ++D+L R GRL A E+ +P
Sbjct: 247 SACAHGGLVG-EGLRRFSSMSSDYGLTPRGPHYAAVVDMLARVGRLHDAYELVKNLPDCQ 305
Query: 296 TNVVVW 301
+ VVW
Sbjct: 306 EHSVVW 311
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/222 (29%), Positives = 103/222 (46%), Gaps = 31/222 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT++ ++ C L+ G ++H V K +V+ N+AL DMY+ +D+ ++F
Sbjct: 137 DQFTFASVLCACARLAALGHGRRVHGVAVKSDVGGNVFANSALVDMYLKCSCPEDARRVF 196
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
PERN+ WT +I G+ + +EALA F RMAA + P+++T LAV
Sbjct: 197 AAAPERNVTM----------WTAVISGHGQQGCVDEALAFFDRMAASGF-RPNDVTFLAV 245
Query: 143 LPAIWKNGEVRNCQLIHGYGEKR--------GFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
L A G V G G +R G H + ++D A+ G + A +L
Sbjct: 246 LSACAHGGLV-------GEGLRRFSSMSSDYGLTPRGPHYAA-VVDMLARVGRLHDAYEL 297
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVE----NFERMQ 232
++ +++ V W I+ HG E VE F R+Q
Sbjct: 298 VKNLPDCQEHSVVWGAILGACRKHGGDVELVELAARRFFRLQ 339
>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 679
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 98/302 (32%), Positives = 156/302 (51%), Gaps = 34/302 (11%)
Query: 16 SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL 75
S L P D+FT S ++ G ++H + G S VY+ ++L DMY +
Sbjct: 200 SDLKP--DAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARI 257
Query: 76 KDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS 135
+DS ++F L R+ ++WN ++ GY + R NEAL LFR+M + + P
Sbjct: 258 EDSERVFSHLYRRDSISWNSLVA----------GYVQNGRYNEALRLFRQMVSAK-VRPG 306
Query: 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
+ +V+PA + + +HGY + GF +I +++ L+D Y+KCG I +A K+F
Sbjct: 307 AVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGR-NIFIASALVDMYSKCGNIQAARKIF 365
Query: 196 EDTSVDRKNL---VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG------- 245
DR NL VSWT II G A+HG G EAV FE M++ G+KPN+ +
Sbjct: 366 -----DRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSH 420
Query: 246 ----EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+E +F+ M + + +++HY + D+L RAG+LE+A + S + + T VW
Sbjct: 421 VGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTG-SVW 479
Query: 302 RT 303
T
Sbjct: 480 ST 481
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 111/216 (51%), Gaps = 14/216 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D + ++++C + G +H ++G +Y AL +MY L + K+F
Sbjct: 104 DHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVF 163
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ +P +++V++N +I GY++ +AL + R M + +P T+ +V
Sbjct: 164 ELMPRKDVVSYNTVIA----------GYAQSGMYEDALRMVREMGTSDL-KPDAFTLSSV 212
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LP + +V + IHGY ++G ++ D+++ + L+D YAK I + ++F + + R
Sbjct: 213 LPIFSEYVDVLKGKEIHGYVIRKGIDS-DVYIGSSLVDMYAKSARIEDSERVF--SHLYR 269
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
++ +SW ++++G+ +G EA+ F +M ++P
Sbjct: 270 RDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRP 305
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 98/215 (45%), Gaps = 21/215 (9%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
+ +S +I C L+ +LG QLH + GF ++++ +AL DMY G ++ + K+FD
Sbjct: 307 AVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFD 366
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
+ + V+ WT II G++ +EA++LF M + +P+++ +AVL
Sbjct: 367 RMNLHDEVS----------WTAIIMGHALHGHGHEAVSLFEEMKR-QGVKPNQVAFVAVL 415
Query: 144 PAIWKNGEVRNC-QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
A G V + + G N H + + D + G + A V+
Sbjct: 416 TACSHVGLVDEAWGYFNSMTKVYGLNQELEHYA-AVADLLGRAGKLEEAYDFISKMRVEP 474
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
V W+T++S ++H +N E +KV K
Sbjct: 475 TGSV-WSTLLSSCSVH-------KNLELAEKVAEK 501
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 123/272 (45%), Gaps = 29/272 (10%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
LI+ + + QLHA F + SH + + +Y +L L ++ +F L
Sbjct: 11 LIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVIS-IYTNLKLLHEALLVFKTLESPP 69
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
++ W +I ++ + + ALA F M A P +VL +
Sbjct: 70 VLAWK----------SVIRCFTDQSLFSRALASFVEMRASGRC-PDHNVFPSVLKSCTMM 118
Query: 150 GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWT 209
++R + +HG+ + G + D++ N L++ Y+K I S K+FE + RK++VS+
Sbjct: 119 MDLRFGESVHGFIVRLGMDC-DLYTGNALMNMYSKLLGIDSVRKVFE--LMPRKDVVSYN 175
Query: 210 TIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECE--------- 260
T+I+G+A GM ++A+ M LKP+ ++ + L F + V+ +
Sbjct: 176 TVIAGYAQSGMYEDALRMVREMGTSDLKPD-AFTLSSV-LPIFSEYVDVLKGKEIHGYVI 233
Query: 261 ---VLPDIKHYGCLIDILERAGRLEQAEEVAS 289
+ D+ L+D+ ++ R+E +E V S
Sbjct: 234 RKGIDSDVYIGSSLVDMYAKSARIEDSERVFS 265
>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
mitochondrial [Vitis vinifera]
Length = 623
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 160/290 (55%), Gaps = 31/290 (10%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
FTYS ++R C L PNL QLH K G +S V+V +AL D+Y L ++ +FDE
Sbjct: 156 FTYSSVLRACDGL--PNL-RQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDE 212
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+P R+LV WN II G+++ + NEAL LF+RM + + T+ +VL
Sbjct: 213 MPTRDLVVWN----------SIIGGFAQNSDGNEALNLFKRMKRAGFL-ADQATLTSVLR 261
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A + + +H + K F+ D+ ++N LID Y KCG + A+ F + + K+
Sbjct: 262 ACTGLALLELGRQVHVHVLK--FDQ-DLILNNALIDMYCKCGSLEDANSAF--SRMVEKD 316
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFD 253
++SW+T+++G A +G ++A+E FE M++ G +PN +G E+G +F
Sbjct: 317 VISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFR 376
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
M + V P +HYGCLID+L RAGRL++A ++ + + + V WRT
Sbjct: 377 SMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECE-PDSVTWRT 425
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 89/312 (28%), Positives = 145/312 (46%), Gaps = 40/312 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHA-VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D+ TYS LI+ C G ++H +F K G++ ++V L +MYV L+++ L
Sbjct: 54 DAITYSELIKCCSARGAVQEGKRVHEHIFCK-GYEPKMFVVNTLLNMYVKFNLLEEAEDL 112
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEA-----LALFRRMAACEYTEPSE 136
FDE+PERN+V+ WT +I YS N+ N+ + +FR E P+
Sbjct: 113 FDEMPERNVVS----------WTTMISAYS--NKLNDKALKCLILMFR-----EGVRPNM 155
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
T +VL A + N + +H K G + D+ V + LID Y+K + +A +F+
Sbjct: 156 FTYSSVLRAC---DGLPNLRQLHCGIIKTGLES-DVFVRSALIDVYSKWSDLDNALGVFD 211
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGE----EGLKFF 252
+ ++LV W +II GFA + G EA+ F+RM++ G +++ GL
Sbjct: 212 EMPT--RDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALL 269
Query: 253 D----KMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRL 308
+ V + D+ LID+ + G LE A S + + +V+ W T L
Sbjct: 270 ELGRQVHVHVLKFDQDLILNNALIDMYCKCGSLEDANSAFSRMVEK--DVISWSTMVAGL 327
Query: 309 LINSYFFSPITL 320
N Y + L
Sbjct: 328 AQNGYSRQALEL 339
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 28/205 (13%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D T + ++R C L+ LG Q+H K F + +N AL DMY G L+D++
Sbjct: 250 LADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLILNNALIDMYCKCGSLEDANS 307
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
F + E+++++W+ ++ GL + +GYSR +AL LF M + P+ IT+L
Sbjct: 308 AFSRMVEKDVISWSTMVAGLAQ-----NGYSR-----QALELFESMKE-SGSRPNYITVL 356
Query: 141 AVLPAIWKNGEV-------RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASK 193
VL A G V R+ + + G R CLID + G + A K
Sbjct: 357 GVLFACSHAGLVEKGWYYFRSMKKLFGVDPGREHYG-------CLIDLLGRAGRLDEAVK 409
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMH 218
L + + + V+W T++ +H
Sbjct: 410 LIHEMECE-PDSVTWRTLLGACRVH 433
>gi|224077718|ref|XP_002305377.1| predicted protein [Populus trichocarpa]
gi|222848341|gb|EEE85888.1| predicted protein [Populus trichocarpa]
Length = 427
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 168/313 (53%), Gaps = 41/313 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +++ +IR + + + +L F ++ + V NT L D YV G + + LF
Sbjct: 11 DVVSWNSMIRGLLKVGELSEACKL---FDEMPMKDAVSWNTIL-DGYVKAGEMNKAFGLF 66
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
+ +PERN+V+W+ +++G LV WT I+ GY+ + +A+
Sbjct: 67 ESMPERNVVSWSTMVSGYCKAGDMEMARMLFDRMPVKNLVSWTIIVSGYAVKGLAKDAIR 126
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
F +M +P + T++++L + ++G + + +H E+ + ++VSN L+D
Sbjct: 127 SFEQMEEAGL-KPDDGTVISILASCAESGLLGLGKRVHTSIERIRYKC-SVNVSNALVDM 184
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG + A +F S +K+LVSW ++ G AMHG G++A++ F M++ G +P++
Sbjct: 185 YAKCGQVDRALSVFNGMS--KKDLVSWNCMLQGLAMHGHGEKALQLFSIMRQEGFRPDKV 242
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+ +EG+++F+ M + ++P I+HYGC++D+L R GRL++A +
Sbjct: 243 TLVAVLCACVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEAYRLVQS 302
Query: 291 IPSQITNVVVWRT 303
+P + NVV+W T
Sbjct: 303 MPVE-PNVVIWGT 314
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 37/224 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ +C LG ++H ++ ++ V V+ AL DMY G + + +F
Sbjct: 139 DDGTVISILASCAESGLLGLGKRVHTSIERIRYKCSVNVSNALVDMYAKCGQVDRALSVF 198
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + +++LV+WN ++ GL + +AL LF M E P ++T++AV
Sbjct: 199 NGMSKKDLVSWNCMLQGL----------AMHGHGEKALQLFSIMRQ-EGFRPDKVTLVAV 247
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFD-----------IHVSNCLIDTYAKCGCIFSA 191
L C +H G F+ I C++D + G + A
Sbjct: 248 L-----------CACVHAGFVDEGIRYFNNMERDYGIVPHIEHYGCMVDLLGRGGRLKEA 296
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMH---GMGKEAVENFERMQ 232
+L + V+ N+V W T++ MH G+ +E ++ +++
Sbjct: 297 YRLVQSMPVE-PNVVIWGTLLGACRMHNAVGLAEEVLDCLFKLE 339
>gi|449470352|ref|XP_004152881.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g56550-like [Cucumis sativus]
Length = 579
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 158/291 (54%), Gaps = 27/291 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FT+SF+++ C + ++H + G+ + V V T L Y ++G + + ++F
Sbjct: 104 DTFTFSFVLKACERIKAERKCKEVHGSVIRCGYDADVIVCTNLVKCYSAMGSVCIARQVF 163
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++P R+LV WN +I+ +S+ EAL + +M + E + T++ +
Sbjct: 164 DKMPARDLVAWNAMIS----------CFSQQGLHQEALQTYNQMRS-ENVDIDGFTLVGL 212
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ + G + +H + + G + ++V N LID YAKCG + A +F+ + R
Sbjct: 213 ISSCAHLGALNIGVQMHRFARENGLDQ-SLYVGNALIDMYAKCGSLDQAILIFD--RMQR 269
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
K++ +W ++I G+ +HG G EA+ F++M + ++PN +G +EG+K+
Sbjct: 270 KDIFTWNSMIVGYGVHGRGSEAIYCFQQMLEARIQPNPVTFLGLLCGCSHQGLVQEGVKY 329
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
F+ M + + P++KHYGCL+D+ RAG+L++A E+ S S + V+WR
Sbjct: 330 FNLMSSKFRLKPEVKHYGCLVDLYGRAGKLDKALEIVSN--SSHNDSVLWR 378
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 87/208 (41%), Gaps = 35/208 (16%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D FT LI +C L N+G Q+H + G +YV AL DMY G L + +
Sbjct: 204 IDGFTLVGLISSCAHLGALNIGVQMHRFARENGLDQSLYVGNALIDMYAKCGSLDQAILI 263
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + +++ TWN +I GY R +EA+ F++M +P+ +T L
Sbjct: 264 FDRMQRKDIFTWNSMIV----------GYGVHGRGSEAIYCFQQMLEAR-IQPNPVTFLG 312
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN-----------CLIDTYAKCGCIFS 190
+L G V + G F++ S CL+D Y + G +
Sbjct: 313 LLCGCSHQGLV-----------QEGVKYFNLMSSKFRLKPEVKHYGCLVDLYGRAGKLDK 361
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMH 218
A ++ ++S + V W ++ +H
Sbjct: 362 ALEIVSNSS--HNDSVLWRILLGSCKIH 387
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
W II G+++ + +A+ + +M ++ P T VL A + R C+ +HG
Sbjct: 72 WNSIIRGFAQSSSPIDAIVFYNQMVCDSFSIPDTFTFSFVLKACERIKAERKCKEVHGSV 131
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
+ G++A D+ V L+ Y+ G + A ++F+ ++LV+W +IS F+ G+ +
Sbjct: 132 IRCGYDA-DVIVCTNLVKCYSAMGSVCIARQVFDKMPA--RDLVAWNAMISCFSQQGLHQ 188
Query: 223 EAVENFERMQ 232
EA++ + +M+
Sbjct: 189 EALQTYNQMR 198
>gi|242071929|ref|XP_002451241.1| hypothetical protein SORBIDRAFT_05g026370 [Sorghum bicolor]
gi|241937084|gb|EES10229.1| hypothetical protein SORBIDRAFT_05g026370 [Sorghum bicolor]
Length = 505
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 161/326 (49%), Gaps = 54/326 (16%)
Query: 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF 74
H+P D T+ L+ C + S+P L + LH++ ++GF SH + AL Y
Sbjct: 112 HAP-----DRLTFLPLL-GCAS-SFPVL-SALHSLLLRLGFLSHHPITLALLKPYP---- 159
Query: 75 LKDSSKLFDELPERN--LVTWNVIITGLVK--------------------------WTGI 106
+ LFD++P++N V +N +IT +K W I
Sbjct: 160 MPHVRALFDDMPQKNKCTVAYNTLITACLKARDIRAARHLFDEMQRHRRSRRSVVSWNLI 219
Query: 107 IDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRG 166
I G +R R + A+ F RM P + T++AVLPA K G + H Y +K G
Sbjct: 220 ITGCARSGRDDMAVQCFERMVREGEVAPDDGTLVAVLPACGKTGNAGAGRWAHEYAKKSG 279
Query: 167 FNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVE 226
+HV+N ++D Y KCG + SA ++F T ++++VSW +I+GF+++G G E ++
Sbjct: 280 LLEGTVHVANAVMDMYCKCGDVDSAREVFMTTP--QRSVVSWNAMITGFSLNGHGVEGID 337
Query: 227 NFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDIL 275
F++M + G++PN + + G + F MV E + P I+HYGC++D+
Sbjct: 338 LFQKMMRHGVEPNAVTFLAVLGCCAHAGAVDIGREIFQSMVSEHGIEPAIEHYGCMVDLF 397
Query: 276 ERAGRLEQAEEVASGIPSQITNVVVW 301
R G LE+A + G+P + N +W
Sbjct: 398 GRCGLLEEAHALIQGMPMK-PNAAIW 422
>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Cucumis sativus]
Length = 681
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 151/315 (47%), Gaps = 37/315 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ L LG +LH ++G V + AL DMY+ ++ + LF
Sbjct: 255 DEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILF 314
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
+ + ++ +V+W ++ G K W +I G+ + RS EALA
Sbjct: 315 ENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALA 374
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M A P +IT++ L A + G + +H Y +K ++ + L+D
Sbjct: 375 LFHEMQASS-VAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHNLT-MNVALGTALVDM 432
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG I A ++FE+ + +N ++WT II G A+HG A+ F M +GL P+
Sbjct: 433 YAKCGNIKKAIQVFEE--MPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEI 490
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
IG ++G +F +M + + P +KHY CL+D+L RAG LE+AEE+
Sbjct: 491 TFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRS 550
Query: 291 IPSQITNVVVWRTGF 305
+P + + VVW F
Sbjct: 551 MPFE-PDAVVWGALF 564
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/212 (32%), Positives = 112/212 (52%), Gaps = 20/212 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++TY L + C S ++ ++GF S ++V+ A+ + VS G L + KLF
Sbjct: 154 DNYTYPLLFKVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLF 213
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE R+LV+WN II+GY R ++EA L+ +M P E+T++ V
Sbjct: 214 DESCVRDLVSWN----------SIINGYVRCGLADEAFDLYYKMGELNVM-PDEVTMIGV 262
Query: 143 LPAIWKNGEVRNCQL---IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+ A + ++ N L +H E+ G N + ++N L+D Y KC I +A LFE+ +
Sbjct: 263 VSA---SAQLENLALGRKLHQSIEEMGLN-LTVPLANALMDMYIKCKNIEAAKILFENMT 318
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
+K +VSWTT++ G+A G+ + AV F M
Sbjct: 319 --KKTVVSWTTMVIGYAKFGLLESAVRLFNEM 348
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 89/210 (42%), Gaps = 17/210 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + C L ++G +H K +V + TAL DMY G +K + ++F
Sbjct: 387 DKITVVNCLSACSQLGALDVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVF 446
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+P RN +TW II GL + + + A++ F M + P EIT + V
Sbjct: 447 EEMPGRNSLTWTAIICGL----------ALHGQPHAAISYFSEMISIGLV-PDEITFIGV 495
Query: 143 LPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G V + + K G + H S CL+D + G + A +L +
Sbjct: 496 LSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYS-CLVDLLGRAGFLEEAEELIRSMPFE 554
Query: 202 RKNLVSWTTIISGFAMHG---MGKEAVENF 228
+ V W + G +HG MG+ A
Sbjct: 555 -PDAVVWGALFFGSRIHGNVHMGERAASKL 583
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 80/169 (47%), Gaps = 19/169 (11%)
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDG---YSRMNRSNEALALFRRMAACEYTEPSE 136
K+ + N+ +WN+ I G V+ I+ Y M R A+ YT P
Sbjct: 109 KILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIP-------DNYTYPLL 161
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
+ A W E I G+ + GF++ D+ V N +I CG + +A KLF+
Sbjct: 162 FKVCAGFSLSWTANE------ILGHVIQLGFDS-DLFVHNAIIHVLVSCGELLAARKLFD 214
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG 245
++ V ++LVSW +II+G+ G+ EA + + +M ++ + P+ IG
Sbjct: 215 ESCV--RDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIG 261
>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g14730-like [Vitis vinifera]
Length = 629
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 154/295 (52%), Gaps = 30/295 (10%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
FT + ++ + N G +H K+G+ S V V+ +L DMY ++D+ ++F+
Sbjct: 238 FTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEM 297
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ E+++ +WN I++ + + G DG L L RM +P +T+ VLP
Sbjct: 298 MREKDIFSWNSIVS-VHEQCGDHDG---------TLRLLDRMLGAG-IQPDLVTVTTVLP 346
Query: 145 AIWKNGEVRNCQLIHGYG-----EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
A + + + IHGY K G + D+ + N +ID YAKCG + A +FE S
Sbjct: 347 ACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMS 406
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
K++ SW +I G+ MHG G EA+E F RM +V LKP+ +G +G
Sbjct: 407 --NKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQG 464
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F +M + +V P I+HY C+ID+L RAG+L++A E+A +P + N VVWR
Sbjct: 465 RNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIE-ANPVVWRA 518
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 113/217 (52%), Gaps = 17/217 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ I+ C+ + ++H + K G + V++ +AL + Y+ G ++ + F
Sbjct: 138 DKFTFPCAIKACLDVLEIK---KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAF 194
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ELP R++V WN +++GY+++ + L FRRM E PS T+ V
Sbjct: 195 EELPIRDVVLWN----------AMVNGYAQIGQFEMVLETFRRMND-ESVVPSRFTVTGV 243
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L G++ N ++IHG+ K G+++ + VSN LID Y KC CI A ++FE +
Sbjct: 244 LSVFAVMGDLNNGRIIHGFAMKMGYDS-GVAVSNSLIDMYGKCKCIEDALEIFE--MMRE 300
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
K++ SW +I+S G + +RM G++P+
Sbjct: 301 KDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPD 337
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 102/233 (43%), Gaps = 25/233 (10%)
Query: 16 SPLPPLFDSFTYSFLIRTCV-----TLSYPNL--GTQLHAVFSKVGFQSHVYVNTALGDM 68
S + SF + + TC+ + + NL G ++H+ GF + T+L +M
Sbjct: 22 SSISTAIQSFQQPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINM 81
Query: 69 YVSLGFLKDSSKLF-DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA 127
Y + + +F D E N+ +N II+G I +G+ E +++M
Sbjct: 82 YSKCNQMNFALSIFSDPTHEINVFAFNAIISGF-----ITNGFPE-----EGFEFYQKMR 131
Query: 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC 187
E P + T + A E++ IHG K G D+ + + L++ Y K G
Sbjct: 132 N-EGVIPDKFTFPCAIKACLDVLEIKK---IHGLLFKFGLE-LDVFIGSALVNCYLKFGL 186
Query: 188 IFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+ A FE+ + +++V W +++G+A G + +E F RM + P+R
Sbjct: 187 MEHAQVAFEELPI--RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSR 237
>gi|46805412|dbj|BAD16914.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|215704291|dbj|BAG93131.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 527
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/320 (30%), Positives = 167/320 (52%), Gaps = 41/320 (12%)
Query: 17 PLPPLFDSFTYSFLIRTCV-TLSYP---NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL 72
P P+ + T ++ C + S P L +HA K+ F SH+ ++T L Y +
Sbjct: 94 PAAPVPNDVTLLTVLSACADSPSSPLARRLALSVHARVLKL-FPSHLLLSTCLVRFYFAS 152
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGL---------------------VKWTGIIDGYS 111
+ +LFD +P R+ VT+N +I+GL V WT +IDG
Sbjct: 153 RLPHLALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCV 212
Query: 112 RMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD 171
+ R +EA+ FR M + EP +T++AV+ A + G + +H ++G +
Sbjct: 213 KNGRHDEAIDCFRAML-LDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLER-N 270
Query: 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
+ ++N LID YA+CG + A ++F + + ++ +VSW ++I GFA +G +AVE+FE M
Sbjct: 271 VRIANSLIDMYARCGQVELARQVF--SGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAM 328
Query: 232 QKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGR 280
++ G KP+ G +EGL+++D M E + ++HYGC++D+L R+G+
Sbjct: 329 RREGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGQ 388
Query: 281 LEQAEEVASGIPSQITNVVV 300
LE+A V + +P + VV+
Sbjct: 389 LEEAMRVVTTMPMRPNEVVL 408
>gi|357508535|ref|XP_003624556.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499571|gb|AES80774.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 476
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/308 (28%), Positives = 151/308 (49%), Gaps = 37/308 (12%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF-LKDSS 79
L D FTY F+I C+ + G H + K+GF S VYV + ++Y +G + D
Sbjct: 115 LPDKFTYPFVINACIASGVIDFGRLTHGLAIKMGFWSDVYVQNNMMNLYFKIGGDVDDGW 174
Query: 80 KLFDELPERNLVTWNVIITGLV---------------------KWTGIIDGYSRMNRSNE 118
K+FD++ RN+V+W +I GLV WT +I+GY + + +
Sbjct: 175 KVFDKMRVRNVVSWTTVIAGLVACGKLDTAREVFERIPSKNVVSWTAMINGYVKNDNPIK 234
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
A LF RM + P+E T+++++ A G ++ + +H + K GF + L
Sbjct: 235 AFDLFERML-IDNVRPNEFTLVSLIKACTDLGSLKLGRRMHDFALKNGFE-LGPFLGTAL 292
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
+D Y+KCG + +A K+F V +NL +W T+++ F +HG G E ++ F+ M+K G+ P
Sbjct: 293 VDMYSKCGSLDAAVKVFGLMEV--RNLATWNTMLTSFGVHGFGNEVLDLFKEMEKAGVVP 350
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ +G E G K+F M E + P ++HY C++ + RA L + +
Sbjct: 351 DAITFVGVLSACVQINDLELGQKYFSLMTEHYSLTPILEHYTCMVGLYTRANELNEIRTL 410
Query: 288 ASGIPSQI 295
+ I
Sbjct: 411 GDTMSLSI 418
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 15/188 (7%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
Q+HA + + L + S G + +S +FD+L + ++ TWNV+I
Sbjct: 38 QIHARIIRFRLTHDQLLIRKLCQISSSYGKIDYASLVFDQLNDPDIFTWNVMIR------ 91
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
Y+ +++ LF+ M C + P + T V+ A +G + +L HG K
Sbjct: 92 ----AYNTSGLPQKSIFLFKDMICCGFL-PDKFTYPFVINACIASGVIDFGRLTHGLAIK 146
Query: 165 RGFNAFDIHVSNCLIDTYAKCGC-IFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKE 223
GF + D++V N +++ Y K G + K+F+ V +N+VSWTT+I+G G
Sbjct: 147 MGFWS-DVYVQNNMMNLYFKIGGDVDDGWKVFDKMRV--RNVVSWTTVIAGLVACGKLDT 203
Query: 224 AVENFERM 231
A E FER+
Sbjct: 204 AREVFERI 211
>gi|359489007|ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g74630-like [Vitis vinifera]
Length = 663
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 167/317 (52%), Gaps = 45/317 (14%)
Query: 23 DSFTYSFLI--RTCVTLSYPNL--GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
D FT++FL+ R+ + + P + ++H K+GF H++V AL +Y + G +
Sbjct: 281 DGFTFTFLLKGRSRMRIDLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAA 340
Query: 79 SKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSN 117
++F+E+ ++V+W+ ++ +V WT ++ GY++ RS
Sbjct: 341 HQVFNEMVGADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSR 400
Query: 118 EALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
EAL LFR M P E+ +++V+ A G++ +H Y ++ GF + + + N
Sbjct: 401 EALELFREMRDVG-VRPDEVAMVSVISACTSLGDLETGFEVHRYIDENGF-GWMVSLCNA 458
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
LID YAKCGC+ A ++F + ++RK+L++W ++IS A HG ++A F M G++
Sbjct: 459 LIDMYAKCGCMDLAWQVFNN--MERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIR 516
Query: 238 PN-------------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
P+ + W ++G F+ M + V ++HYGC++D+L RAGRLE+A
Sbjct: 517 PDGVTFLALLTAYTHKGWV--DDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEA 574
Query: 285 EEVASGIPSQITNVVVW 301
++ + + S N VVW
Sbjct: 575 YKLITSM-SMPCNDVVW 590
>gi|356560406|ref|XP_003548483.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26630,
chloroplastic-like [Glycine max]
Length = 483
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 144/293 (49%), Gaps = 35/293 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FTY F+I C+ S +LG HA+ K+GF +YV + ++Y + D K+F
Sbjct: 122 DKFTYPFVINACMASSALDLGIVAHALAIKMGFWGDLYVQNTMMNLYFKCENVDDGRKVF 181
Query: 83 DELPERNLVTWNVIITGL---------------------VKWTGIIDGYSRMNRSNEALA 121
D++ RN+ W +I+GL V WT +IDGY + + EA
Sbjct: 182 DKMRVRNVFAWTTVISGLVACGKLDTARELFEQMPSKNVVSWTAMIDGYVKHKQPIEAFN 241
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF RM + P+E T+++++ A + G ++ + +H + K GF + + LID
Sbjct: 242 LFERMQQVDNVRPNEYTLVSLVRACTEMGSLKLGRRVHDFALKNGFE-LEPFLGTALIDM 300
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
Y+KCG + A +F+ V + L +W T+I+ +HG EA+ F+ M+K P+
Sbjct: 301 YSKCGYLDDARTVFDMMQV--RTLATWNTMITSLGVHGYRDEALSLFDEMEKANEVPDAI 358
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQ 283
+G E K+F+ M + + P ++HY C+++I RA L++
Sbjct: 359 TFVGVLSACVYMNDLELAQKYFNLMTDHYGITPILEHYTCMVEIYTRAIELDE 411
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 80/320 (25%), Positives = 128/320 (40%), Gaps = 62/320 (19%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
Q+H + G + L + S G +K ++ +FD+L ++ TWNV+I
Sbjct: 43 QVHGKIIRFGLTYDQLLMRKLIQLSSSYGKMKYATLVFDQLNAPDVFTWNVMIRAFT--- 99
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
I G +M AL LF+ M C+ P + T V+ A + + + H K
Sbjct: 100 --IGGSPKM-----ALLLFKAM-LCQGFAPDKFTYPFVINACMASSALDLGIVAHALAIK 151
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE-----------------------DTS-- 199
GF D++V N +++ Y KC + K+F+ DT+
Sbjct: 152 MGFWG-DLYVQNTMMNLYFKCENVDDGRKVFDKMRVRNVFAWTTVISGLVACGKLDTARE 210
Query: 200 ----VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNR-------------- 240
+ KN+VSWT +I G+ H EA FERMQ+V ++PN
Sbjct: 211 LFEQMPSKNVVSWTAMIDGYVKHKQPIEAFNLFERMQQVDNVRPNEYTLVSLVRACTEMG 270
Query: 241 SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
S ++G F K E E LID+ + G L+ A V + Q+ +
Sbjct: 271 SLKLGRRVHDFALKNGFELEPFLGT----ALIDMYSKCGYLDDARTVFDMM--QVRTLAT 324
Query: 301 WRTGFLRLLINSYFFSPITL 320
W T L ++ Y ++L
Sbjct: 325 WNTMITSLGVHGYRDEALSL 344
>gi|22331393|ref|NP_189507.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273574|sp|Q9LJI9.1|PP260_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g28660
gi|9294280|dbj|BAB02182.1| unnamed protein product [Arabidopsis thaliana]
gi|20259531|gb|AAM13885.1| unknown protein [Arabidopsis thaliana]
gi|24030460|gb|AAN41382.1| unknown protein [Arabidopsis thaliana]
gi|332643950|gb|AEE77471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 148/281 (52%), Gaps = 26/281 (9%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
T+ FLI C+ + ++G Q+H K G F S +V T + +YV L D+ K+FD
Sbjct: 117 LTFHFLIVACLKACFFSVGKQIHCWVVKNGVFLSDGHVQTGVLRIYVEDKLLFDARKVFD 176
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
E+P+ ++V W+V++ +GY R +E L +F+ M EP E ++ L
Sbjct: 177 EIPQPDVVKWDVLM----------NGYVRCGLGSEGLEVFKEMLV-RGIEPDEFSVTTAL 225
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
A + G + + IH + +K+ + D+ V L+D YAKCGCI +A ++FE + R+
Sbjct: 226 TACAQVGALAQGKWIHEFVKKKRWIESDVFVGTALVDMYAKCGCIETAVEVFEKLT--RR 283
Query: 204 NLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNRSWRIG-----------EEGLKF 251
N+ SW +I G+A +G K+A +R+++ G+KP+ +G EEG
Sbjct: 284 NVFSWAALIGGYAAYGYAKKATTCLDRIEREDGIKPDSVVLLGVLAACAHGGFLEEGRTM 343
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+ M + P +HY C++D++ RAGRL+ A ++ +P
Sbjct: 344 LENMEARYGITPKHEHYSCIVDLMCRAGRLDDALDLIEKMP 384
>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
Length = 709
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 154/295 (52%), Gaps = 30/295 (10%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
FT + ++ + N G +H K+G+ S V V+ +L DMY ++D+ ++F+
Sbjct: 238 FTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEM 297
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ E+++ +WN I++ + + G DG L L RM +P +T+ VLP
Sbjct: 298 MREKDIFSWNSIVS-VHEQCGDHDG---------TLRLLDRMLGAG-IQPDLVTVTTVLP 346
Query: 145 AIWKNGEVRNCQLIHGYG-----EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
A + + + IHGY K G + D+ + N +ID YAKCG + A +FE S
Sbjct: 347 ACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMS 406
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
K++ SW +I G+ MHG G EA+E F RM +V LKP+ +G +G
Sbjct: 407 --NKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQG 464
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F +M + +V P I+HY C+ID+L RAG+L++A E+A +P + N VVWR
Sbjct: 465 RNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIE-ANPVVWRA 518
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 113/217 (52%), Gaps = 17/217 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ I+ C+ + ++H + K G + V++ +AL + Y+ G ++ + F
Sbjct: 138 DKFTFPCAIKACLDVLEIK---KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAF 194
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ELP R++V WN +++GY+++ + L FRRM E PS T+ V
Sbjct: 195 EELPIRDVVLWN----------AMVNGYAQIGQFEMVLETFRRMND-ESVVPSRFTVTGV 243
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L G++ N ++IHG+ K G+++ + VSN LID Y KC CI A ++FE +
Sbjct: 244 LSVFAVMGDLNNGRIIHGFAMKMGYDS-GVAVSNSLIDMYGKCKCIEDALEIFE--MMRE 300
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
K++ SW +I+S G + +RM G++P+
Sbjct: 301 KDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPD 337
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 102/233 (43%), Gaps = 25/233 (10%)
Query: 16 SPLPPLFDSFTYSFLIRTCV-----TLSYPNL--GTQLHAVFSKVGFQSHVYVNTALGDM 68
S + SF + + TC+ + + NL G ++H+ GF + T+L +M
Sbjct: 22 SSISTAIQSFQQPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINM 81
Query: 69 YVSLGFLKDSSKLF-DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA 127
Y + + +F D E N+ +N II+G I +G+ E +++M
Sbjct: 82 YSKCNQMNFALSIFSDPTHEINVFAFNAIISGF-----ITNGFPE-----EGFEFYQKMR 131
Query: 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC 187
E P + T + A E++ IHG K G D+ + + L++ Y K G
Sbjct: 132 N-EGVIPDKFTFPCAIKACLDVLEIKK---IHGLLFKFGLE-LDVFIGSALVNCYLKFGL 186
Query: 188 IFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+ A FE+ + +++V W +++G+A G + +E F RM + P+R
Sbjct: 187 MEHAQVAFEELPI--RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSR 237
>gi|255551485|ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543876|gb|EEF45402.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 710
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/306 (30%), Positives = 152/306 (49%), Gaps = 35/306 (11%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
LI C G QL + K+GF + ++ + + +Y + G + ++ F + N
Sbjct: 336 LISGCGRTMAMTEGQQLLSAVVKMGFDCYDFIQSTIIHLYAACGRINEACLQFRIGSKEN 395
Query: 90 LVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALALFRRMAA 128
+ +WN +I G V+ W+ +I GY++ + N AL LF +M A
Sbjct: 396 VASWNALIAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQPNLALELFHKMVA 455
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
+P+E+T+++VL AI +G ++ + H Y D ++S +ID YAKCG I
Sbjct: 456 -SGIKPNEVTMVSVLSAIATSGTLKEGRWAHEYVHNNSITVSD-NLSAAIIDMYAKCGSI 513
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG--- 245
+A ++F + + W II G A+HG +++ F +++ +K N IG
Sbjct: 514 NNALEVFYEIREKASTVSPWNAIICGLAVHGHANLSLKIFSDLERRHIKLNAITFIGVLT 573
Query: 246 --------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITN 297
E G + F M E + PDIKHYGC++D+L RAGRLE+AEE+ +P + +
Sbjct: 574 ACCHVGLVESGKRHFMSMKSEHSIDPDIKHYGCMVDLLGRAGRLEEAEEMIRSMPMK-AD 632
Query: 298 VVVWRT 303
VV+W T
Sbjct: 633 VVIWGT 638
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 142/329 (43%), Gaps = 64/329 (19%)
Query: 46 LHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG------ 99
LH + K+ F+ V V+T L MY L ++ LFDE+PE+N+V+WNV++ G
Sbjct: 220 LHGLVIKMLFEEFVLVSTNLLRMYCVCSSLVEARALFDEMPEKNIVSWNVMLNGYSKAGF 279
Query: 100 ---------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
LV W IIDGY R+ R NEAL ++R M + + EP+++ ++ ++
Sbjct: 280 VDSARVVFERIPNKDLVTWGTIIDGYVRVERINEALMMYRSMISAGW-EPNDVMMVDLIS 338
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS----- 199
+ + Q + K GF+ +D + + +I YA CG I A F S
Sbjct: 339 GCGRTMAMTEGQQLLSAVVKMGFDCYDF-IQSTIIHLYAACGRINEACLQFRIGSKENVA 397
Query: 200 --------------VDR----------KNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
+DR +++ SW+T+ISG+ + A+E F +M G
Sbjct: 398 SWNALIAGYVRNRMIDRAMELFNEMPERDVFSWSTMISGYTQNEQPNLALELFHKMVASG 457
Query: 236 LKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
+KPN + +EG ++ + V + +ID+ + G + A
Sbjct: 458 IKPNEVTMVSVLSAIATSGTLKEG-RWAHEYVHNNSITVSDNLSAAIIDMYAKCGSINNA 516
Query: 285 EEVASGIPSQITNVVVWRTGFLRLLINSY 313
EV I + + V W L ++ +
Sbjct: 517 LEVFYEIREKASTVSPWNAIICGLAVHGH 545
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 126/256 (49%), Gaps = 31/256 (12%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDS--FTYSFLIRTCVTLSYPNL----GTQLHAVFSKVGFQ 56
+++Q + ++H +S L P F Y ++ + + +L G Q+H + SK G
Sbjct: 39 IFQQQENPFLHLNSLLNPKTGQRHFNYELVLVSALKFCSDHLFLSQGKQIHCLVSKSGLG 98
Query: 57 SHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK-------------- 102
S+ ++ +L +MY G L D+ +FD P + V++NV+I+G VK
Sbjct: 99 SNNFIQNSLINMYGKCGLLVDAKSIFDVCPRSDPVSYNVMISGYVKSGQLDYACELFDEM 158
Query: 103 -------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNC 155
+T +I G+S+ N+A+ LF++M P+E+TI ++ A G + C
Sbjct: 159 PVKGCVSYTTMIMGFSQNECWNQAVELFKQMRNVGVV-PNEVTIATLVSAYSHFGGIWAC 217
Query: 156 QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGF 215
+++HG K F F + VS L+ Y C + A LF++ + KN+VSW +++G+
Sbjct: 218 RMLHGLVIKMLFEEF-VLVSTNLLRMYCVCSSLVEARALFDE--MPEKNIVSWNVMLNGY 274
Query: 216 AMHGMGKEAVENFERM 231
+ G A FER+
Sbjct: 275 SKAGFVDSARVVFERI 290
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
N +I Y K G + A +LF++ V K VS+TT+I GF+ + +AVE F++M+ VG
Sbjct: 136 NVMISGYVKSGQLDYACELFDEMPV--KGCVSYTTMIMGFSQNECWNQAVELFKQMRNVG 193
Query: 236 LKPN 239
+ PN
Sbjct: 194 VVPN 197
>gi|212722054|ref|NP_001132129.1| uncharacterized protein LOC100193546 [Zea mays]
gi|194693506|gb|ACF80837.1| unknown [Zea mays]
gi|413926460|gb|AFW66392.1| hypothetical protein ZEAMMB73_680096 [Zea mays]
Length = 473
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 149/282 (52%), Gaps = 26/282 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +T LI C + L LH ++G+ HV+ TAL + Y+ G + + ++F
Sbjct: 117 DPYTLPLLISACSCSGF-TLCQSLHGQGFRLGYNCHVFTQTALLNAYLKCGSVATACRVF 175
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM-AACEYTEPSEITILA 141
+E+P +++V W +++G V SRM +A+ +F M A + P+E T+++
Sbjct: 176 EEMPVKDVVAWTSMVSGYVD--------SRMYL--KAVEVFNEMRGADDLVWPNEATVVS 225
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+ A G + + + +H Y EK G ++ V N L+D Y KCGCI SA +LF +
Sbjct: 226 LATACAGLGSLEHAKGLHSYVEKAGLED-ELIVRNALVDMYGKCGCIESAHRLF--CLMR 282
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
K+L SWTT+ISG + HG G+EAV F M + G+ P+ + I +EG+
Sbjct: 283 EKDLHSWTTMISGLSSHGRGEEAVGLFFSMCEEGVLPDSTTFIVVLSACSHAGLVDEGIH 342
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
F+ M E V D KHYGC++D+ RAG + +A E S +P
Sbjct: 343 IFNSMESEHNVPRDTKHYGCMVDLFSRAGLVRRAYEFISMMP 384
>gi|147812109|emb|CAN61522.1| hypothetical protein VITISV_010801 [Vitis vinifera]
Length = 674
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 149/283 (52%), Gaps = 25/283 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT++ +I +C L LG Q+H + ++ F V V +AL DMY ++D+ K F
Sbjct: 278 DXFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAF 337
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + +N+V+W + GY + E + L + M YT P E+ + ++
Sbjct: 338 DGMJVKNIVSWTTMXV----------GYGQHGDGKEXMRLLQEMIRV-YTYPDELALASI 386
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + +H Y + GF AF + ++N L+ Y+KCG I SA + F +SV
Sbjct: 387 LSSCGNLSATSEVVQVHAYVVENGFEAF-LSIANALVSAYSKCGSIGSAFQSF--SSVAE 443
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGE-----------EGLKF 251
+++SWT+++ +A HG+ K+ V+ FE++ ++P++ +G EGL +
Sbjct: 444 PDIISWTSLMGAYAFHGLSKQGVDVFEKILSSNVRPDKVAFLGVLSACAHGGFVLEGLHY 503
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
F+ M+ +++PD +HY +ID+L RAG L++A + + +P +
Sbjct: 504 FNLMINVYQIMPDSEHYTSIIDLLGRAGFLDEAVNLLTSMPVE 546
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 77/291 (26%), Positives = 140/291 (48%), Gaps = 25/291 (8%)
Query: 26 TYSF---LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
T+SF ++ L + + G QLHA K+G + + + + +YV D K+F
Sbjct: 72 THSFSSHALKISAKLGFLHGGKQLHAHVIKLGXCNLLSLQNQVLHVYVKCKEFNDVCKMF 131
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+P +N+V+WN +I G+++G + FR+M E P+ IT+ +
Sbjct: 132 DEMPLKNVVSWNTLI------CGVVEGNCKFALVRLGFHCFRQMVL-EMMAPNCITLNGL 184
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + +V C+ +H + K GF++ + V + L+D+YAK G + A F++ S
Sbjct: 185 LRASIELNDVGICRQLHCFILKSGFDS-NCFVGSALVDSYAKFGLVDEAQSAFDEVS--S 241
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP---------NRSWRIGEEGL-KFF 252
++LV W ++S +A++G+ +A F+ M+ G+K N +G GL K
Sbjct: 242 RDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDXFTFTSMINSCGVLGSCGLGKQV 301
Query: 253 DKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++ D+ L+D+ + +E A + G+ + N+V W T
Sbjct: 302 HGLIIRLSFDLDVLVASALVDMYSKNENIEDARKAFDGM--JVKNIVSWTT 350
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 106/218 (48%), Gaps = 14/218 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T + L+R + L+ + QLH K GF S+ +V +AL D Y G + ++ F
Sbjct: 177 NCITLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDEAQSAF 236
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ R+LV WNV+++ Y+ +A +F+ M E + T ++
Sbjct: 237 DEVSSRDLVLWNVMVS----------CYALNGVQGKAFGVFKLMRL-EGVKGDXFTFTSM 285
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ + G + +HG + F+ D+ V++ L+D Y+K I A K F+ V
Sbjct: 286 INSCGVLGSCGLGKQVHGLIIRLSFD-LDVLVASALVDMYSKNENIEDARKAFDGMJV-- 342
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
KN+VSWTT+ G+ HG GKE + + M +V P+
Sbjct: 343 KNIVSWTTMXVGYGQHGDGKEXMRLLQEMIRVYTYPDE 380
>gi|147771061|emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
Length = 722
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 166/317 (52%), Gaps = 45/317 (14%)
Query: 23 DSFTYSFLI--RTCVTLSYPNL--GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
D FT++FL+ R+ + + P + ++H K+GF H++V AL +Y + G +
Sbjct: 340 DGFTFTFLLKGRSRMRIDLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAA 399
Query: 79 SKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSN 117
++F+E+ ++V+W+ ++ +V WT ++ GY++ RS
Sbjct: 400 HQVFNEMVGADVVSWSGLVVAHVRAGELELARQVFDEMPERDVVSWTVMVSGYAQAKRSR 459
Query: 118 EALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
EAL LFR M P E+ ++ V+ A G++ +H Y ++ GF + + + N
Sbjct: 460 EALELFREMRDVG-VRPDEVAMVIVISACTSLGDLETGFEVHRYIDENGF-GWMVSLCNA 517
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
LID YAKCGC+ A ++F + ++RK+L++W ++IS A HG ++A F M G++
Sbjct: 518 LIDMYAKCGCMDLAWQVFNN--MERKSLITWNSMISACANHGNAEDAFRVFTLMLXSGIR 575
Query: 238 PN-------------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
P+ + W ++G F+ M + V ++HYGC++D+L RAGRLE+A
Sbjct: 576 PDGVTFLALLTAYTHKGWV--DDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEA 633
Query: 285 EEVASGIPSQITNVVVW 301
++ + + S N VVW
Sbjct: 634 YKLITSM-SMPCNDVVW 649
>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g13770, mitochondrial; Flags: Precursor
gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 628
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 162/291 (55%), Gaps = 27/291 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT++ ++ +C+ S LG Q+H + K + SH++V ++L DMY G +K++ ++F
Sbjct: 152 NEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIF 211
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ LPER++V+ T II GY+++ EAL +F R+ + E P+ +T ++
Sbjct: 212 ECLPERDVVS----------CTAIIAGYAQLGLDEEALEMFHRLHS-EGMSPNYVTYASL 260
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A+ + + + H + +R + + + N LID Y+KCG + A +LF++ +
Sbjct: 261 LTALSGLALLDHGKQAHCHVLRRELPFYAV-LQNSLIDMYSKCGNLSYARRLFDN--MPE 317
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQ-KVGLKPN-----------RSWRIGEEGLK 250
+ +SW ++ G++ HG+G+E +E F M+ + +KP+ R+ + GL
Sbjct: 318 RTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLN 377
Query: 251 FFDKMVE-ECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
FD MV E P +HYGC++D+L RAGR+++A E +PS+ T V+
Sbjct: 378 IFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVL 428
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 135/287 (47%), Gaps = 24/287 (8%)
Query: 18 LPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD 77
L P Y L+ C+ G ++HA K + Y+ T L Y L+D
Sbjct: 46 LGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLED 105
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
+ K+ DE+PE+N+V+ WT +I YS+ S+EAL +F M + +P+E
Sbjct: 106 ARKVLDEMPEKNVVS----------WTAMISRYSQTGHSSEALTVFAEMMRSD-GKPNEF 154
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
T VL + + + + IHG K +++ I V + L+D YAK G I A ++FE
Sbjct: 155 TFATVLTSCIRASGLGLGKQIHGLIVKWNYDSH-IFVGSSLLDMYAKAGQIKEAREIFE- 212
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN----RSWRIGEEGLKFFD 253
+ +++VS T II+G+A G+ +EA+E F R+ G+ PN S GL D
Sbjct: 213 -CLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLD 271
Query: 254 KMVE-ECEVL-PDIKHYGC----LIDILERAGRLEQAEEVASGIPSQ 294
+ C VL ++ Y LID+ + G L A + +P +
Sbjct: 272 HGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPER 318
>gi|297811669|ref|XP_002873718.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319555|gb|EFH49977.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 548
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 168/349 (48%), Gaps = 74/349 (21%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTAL-------GDMYVSLGFL 75
D +T++F+++ C L + + G +H + GF + YV AL GD+ ++
Sbjct: 111 DRYTFTFVLKACSKLEWRSNGFAIHGKVVRHGFLLNEYVKNALILFHANCGDLGIASELF 170
Query: 76 KDSSK------------------------LFDELPERNLVTWNVIITGLVK--------- 102
DS+K LFDE+P+++ V WNV+ITG +K
Sbjct: 171 DDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPDKDQVAWNVMITGCLKCREMDSARE 230
Query: 103 ------------WTGIIDGYSRMNRSNEALALFRRMA-ACEYTEPSEITILAVLPAIWKN 149
W +I GY EAL++F+ M A E+ P +TIL++L A
Sbjct: 231 LFDRFTEKDVVTWNAMISGYVNCGYPKEALSIFKEMRDAGEH--PDVVTILSLLSACAVL 288
Query: 150 GEVRNCQLIHGYGEKRGFNAFDIHVS----NCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
G++ + +H Y + + I+V N LID YAKCG I A ++F + ++L
Sbjct: 289 GDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFR--GMKDRDL 346
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDK 254
+W T+I G A+H + +VE FE MQ++ + PN IG +EG K+F
Sbjct: 347 STWNTLIVGLALH-HAEGSVEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSL 405
Query: 255 MVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
M + + P+IKHYGC++D+L RAG LE+A + + N +VWRT
Sbjct: 406 MRDMYNIEPNIKHYGCMVDMLGRAGLLEEAFMFVESMKIE-PNAIVWRT 453
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 92/192 (47%), Gaps = 22/192 (11%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSL-----GFLKDSSKLFDELPERNLVTWNVIITG 99
Q+HA G S++ V +G++ S G LK + KLF+E+P+ ++ N
Sbjct: 30 QIHAFMVVNGLMSNLSV---VGELIYSASLSVPGALKYAHKLFEEIPKPDVSICN----- 81
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
++ G ++ + + +AL+ M P T VL A K N IH
Sbjct: 82 -----HVLRGSAQSLKPEKTVALYTEMEK-RGVSPDRYTFTFVLKACSKLEWRSNGFAIH 135
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
G + GF + +V N LI +A CG + AS+LF+D++ K V+W+++ SG+A G
Sbjct: 136 GKVVRHGF-LLNEYVKNALILFHANCGDLGIASELFDDSAKAHK--VAWSSMTSGYAKRG 192
Query: 220 MGKEAVENFERM 231
EA+ F+ M
Sbjct: 193 KIDEAMRLFDEM 204
>gi|413924746|gb|AFW64678.1| hypothetical protein ZEAMMB73_926861 [Zea mays]
Length = 655
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 157/311 (50%), Gaps = 37/311 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D + ++ C + + +G +H+ ++++AL +Y S ++ + KL+
Sbjct: 250 DQLILATVLPACGHIRHLRIGKAIHSYMLVSDMIIGAHISSALISLYASCANMEMAEKLY 309
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
+E+P ++LV+ +++G +V W+ +I GY N+ NEAL+
Sbjct: 310 NEMPRKDLVSSTAMVSGYARNRKVEIARSIFDGMPEKDVVSWSAMISGYVDSNQPNEALS 369
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M C EIT+L+V+ A G + + IH + + G N +H+ N LID
Sbjct: 370 LFNGMQECG-IRSDEITMLSVISACANLGSLDKAKWIHAFIKNSGLNKV-LHICNALIDM 427
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR- 240
+AKCG I A +F + + KN+++WT++IS FAMHG GK ++ FE+M+ G +PN
Sbjct: 428 FAKCGGINLALNVFNEMPL--KNVITWTSMISAFAMHGDGKSSLRLFEQMKDEGAEPNEV 485
Query: 241 ----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+ EG F MV++ + P +HYGC++D+L RA +++A +
Sbjct: 486 TFLSLLYACCHAGLVHEGRLLFSSMVQQYGIEPKHEHYGCMVDLLGRAKLMQEAVSLIES 545
Query: 291 IPSQITNVVVW 301
+ + NV +W
Sbjct: 546 MHLE-PNVPIW 555
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/265 (27%), Positives = 121/265 (45%), Gaps = 30/265 (11%)
Query: 47 HAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGI 106
HA+ + G +V TAL Y + G ++D+ K+FD + R++V+W V +
Sbjct: 173 HALAVRTGALDDGFVGTALAGAYAACGCVRDTRKVFDGMAVRDVVSWGV----------M 222
Query: 107 IDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRG 166
+D Y + EAL LF +M P ++ + VLPA +R + IH Y
Sbjct: 223 LDSYCQTRNYKEALLLFAKMKNSGVV-PDQLILATVLPACGHIRHLRIGKAIHSYMLVSD 281
Query: 167 FNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH-------- 218
H+S+ LI YA C + A KL+ + + RK+LVS T ++SG+A +
Sbjct: 282 M-IIGAHISSALISLYASCANMEMAEKLYNE--MPRKDLVSSTAMVSGYARNRKVEIARS 338
Query: 219 ---GMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDIL 275
GM ++ V ++ M + N+ E L F+ M +EC + D +I
Sbjct: 339 IFDGMPEKDVVSWSAMISGYVDSNQP----NEALSLFNGM-QECGIRSDEITMLSVISAC 393
Query: 276 ERAGRLEQAEEVASGIPSQITNVVV 300
G L++A+ + + I + N V+
Sbjct: 394 ANLGSLDKAKWIHAFIKNSGLNKVL 418
>gi|297801640|ref|XP_002868704.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
gi|297314540|gb|EFH44963.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
Length = 710
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 153/294 (52%), Gaps = 26/294 (8%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
+ D+ TY +R C L NL Q+H+ ++GF S V + A+ +MY G + + +
Sbjct: 234 VLDNITYLSCLRLCSNLRDLNLARQIHSRMVRLGFNSEVEASGAIINMYGKCGKVLYAQR 293
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD +N+V T I+D Y + EAL LF +M E P+E T
Sbjct: 294 VFDNTHAQNIVLN----------TTIMDAYFQDKSFEEALNLFSKMDTKE-VPPNEYTFA 342
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
L +I + +++ L+HG K G+ + V N L++ YAK G I A K F +
Sbjct: 343 ISLNSIAELSLLKHGDLLHGLVLKSGYRNH-VMVGNALVNMYAKSGSIEDARKAFSGMTF 401
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
+++V+W T+I GF+ HG+G+E +E F+RM G PNR IG E+GL
Sbjct: 402 --RDIVTWNTMICGFSHHGLGREGLEAFDRMMIAGEIPNRITFIGVLQACSHVGFVEQGL 459
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+F++++++ V PD++HY C++ +L +AG + AE+ P + +VV WR
Sbjct: 460 YYFNQLMKKFNVQPDLQHYTCIVGLLSKAGMFKDAEDFMRTAPIE-WDVVAWRA 512
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 97/223 (43%), Gaps = 16/223 (7%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHA---VFSKVGFQSHVYVNTALGDMYVSLG 73
P PLF + L++ C SY G +H V ++ VY +L ++YV G
Sbjct: 24 PKKPLFPIDRLNELLKVCANSSYLRTGESIHGHLIVTNQSSRAKDVYQINSLINLYVKCG 83
Query: 74 FLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE 133
+ K+FD +PERN+V+ W ++ GY E L LF+ M + +
Sbjct: 84 ETVRARKVFDLMPERNVVS----------WCAMMKGYQNSGFDFEVLKLFKSMVFSDESR 133
Query: 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASK 193
P+E V + +G + + HG K G + + V N L+ Y+ C A +
Sbjct: 134 PNEFVATVVFKSCSSSGRIEEGKQFHGCFLKSGLMSHEF-VRNTLVYMYSLCSGNGEAIR 192
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
+ +D + +L +++ +SG+ G KE E RM K L
Sbjct: 193 VLDD--LPYCDLSVFSSALSGYLECGAFKEGAEVLRRMAKEDL 233
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/291 (23%), Positives = 123/291 (42%), Gaps = 26/291 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F + + ++C + G Q H F K G SH +V L MY ++ ++
Sbjct: 135 NEFVATVVFKSCSSSGRIEEGKQFHGCFLKSGLMSHEFVRNTLVYMYSLCSGNGEAIRVL 194
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D+LP +L ++ + GY E + RRMA E IT L+
Sbjct: 195 DDLPYCDLSV----------FSSALSGYLECGAFKEGAEVLRRMAK-EDLVLDNITYLSC 243
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L ++ + IH + GFN+ ++ S +I+ Y KCG + A ++F++T
Sbjct: 244 LRLCSNLRDLNLARQIHSRMVRLGFNS-EVEASGAIINMYGKCGKVLYAQRVFDNTHA-- 300
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW------RIGEEGLKFFDKMV 256
+N+V TTI+ + +EA+ F +M + PN I E L ++
Sbjct: 301 QNIVLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAISLNSIAELSLLKHGDLL 360
Query: 257 EECEVLPDIKHY----GCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ +++ L+++ ++G +E A + SG+ ++V W T
Sbjct: 361 HGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSGMT--FRDIVTWNT 409
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 95/199 (47%), Gaps = 18/199 (9%)
Query: 18 LPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD 77
+PP + +T++ + + LS G LH + K G+++HV V AL +MY G ++D
Sbjct: 334 VPP--NEYTFAISLNSIAELSLLKHGDLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIED 391
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
+ K F + R++VTWN +I G+S E L F RM P+ I
Sbjct: 392 ARKAFSGMTFRDIVTWNTMIC----------GFSHHGLGREGLEAFDRMMIAGEI-PNRI 440
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGE-KRGFNAF-DIHVSNCLIDTYAKCGCIFSASKLF 195
T + VL A G V Q ++ + + + FN D+ C++ +K G +F ++ F
Sbjct: 441 TFIGVLQACSHVGFVE--QGLYYFNQLMKKFNVQPDLQHYTCIVGLLSKAG-MFKDAEDF 497
Query: 196 EDTSVDRKNLVSWTTIISG 214
T+ ++V+W +++
Sbjct: 498 MRTAPIEWDVVAWRALLNA 516
>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
Length = 951
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 134/244 (54%), Gaps = 26/244 (10%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y G + D+ LFDE+P RN V+W + +++GY + EAL LF RM A
Sbjct: 287 YARAGRVTDARALFDEMPARNAVSW----------SAMVNGYVQAGDGREALGLFARMQA 336
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
+ P + ++ VL A + G + + +HGY + + + L+D YAKCG +
Sbjct: 337 -DGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIR-ITVFLGTALVDMYAKCGEM 394
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG--- 245
A ++F+ + KN+++WTT+I G AMHG G EA+E F +M+++G+KP+ IG
Sbjct: 395 QLAMEVFK--VMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALC 452
Query: 246 --------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITN 297
++G + FD MV + + P I+HYGC++D+L R G L +A E+ +P + +
Sbjct: 453 ACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMK-PD 511
Query: 298 VVVW 301
++W
Sbjct: 512 ALIW 515
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 95/219 (43%), Gaps = 28/219 (12%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
++ C L G +H + V++ TAL DMY G ++ + ++F + E+N
Sbjct: 349 VLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKN 408
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
++ W +I GL + R +EAL LF +M +P +I + L A
Sbjct: 409 VLAWTTMIKGL----------AMHGRGSEALELFSQMERLG-VKPDDIAFIGALCACTHT 457
Query: 150 GEVRNCQ-----LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
G V + ++ YG K + C++D A+ G + A ++ E +
Sbjct: 458 GLVDKGRELFDSMVRKYGIKPKIEHY-----GCMVDLLARNGLLNEAREMVEKMPMKPDA 512
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQK--VGLKPNRS 241
L+ W +++G H + VE E + K + L+P++S
Sbjct: 513 LI-WGALMAGCRFH----KNVELAEYVVKHWIELEPDKS 546
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 16/170 (9%)
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
R + D N LI YA+ G + A LF++ +N VSW+ +++G+ G G+EA
Sbjct: 270 RTAASVDASTFNTLITAYARAGRVTDARALFDEMPA--RNAVSWSAMVNGYVQAGDGREA 327
Query: 225 VENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLID 273
+ F RMQ G++P+ + +G E+G K+ ++ + + L+D
Sbjct: 328 LGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQG-KWVHGYLKANNIRITVFLGTALVD 386
Query: 274 ILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQ 323
+ + G ++ A EV + + NV+ W T L ++ + L SQ
Sbjct: 387 MYAKCGEMQLAMEVFKVMKEK--NVLAWTTMIKGLAMHGRGSEALELFSQ 434
>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
Length = 562
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 157/292 (53%), Gaps = 25/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FTY L++ C L G Q+HA K+G ++ V+V +L MY G + +F
Sbjct: 87 DNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVF 146
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+++ ER++ +W+ +IT ++ + ++ L L M+ Y E +++V
Sbjct: 147 EQMNERSVASWSALIT----------AHASLGMWSDCLRLLGDMSNEGYWRAEESILVSV 196
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + + +HG+ R + ++ V LI+ Y KCG ++ LF+ + +
Sbjct: 197 LSACTHLGALDLGRSVHGF-LLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMA--K 253
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN +S++ +ISG AMHG G+E + F M + GL+P+ +G +EGL+
Sbjct: 254 KNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQC 313
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F++M E + P I+HYGC++D++ RAG++++A E+ +P + N V+WR+
Sbjct: 314 FNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPME-PNDVLWRS 364
>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 558
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 158/293 (53%), Gaps = 28/293 (9%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D+FT+ F+++ C L + LH++ K G S ++V AL +Y G L+ + K+
Sbjct: 85 LDNFTFPFVLKACSRL---QINLHLHSLIVKYGLGSDIFVQNALICVYGYCGSLEMAVKV 141
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FDE+ ER+ V+W+ +I + +GY ++EAL LF +M + P E+T+L+
Sbjct: 142 FDEMSERDSVSWSTVIASFLN-----NGY-----ASEALDLFEKMQLEDKVVPDEVTMLS 191
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
V+ AI G++ + + + + GF + + LID +++CG I + +FE +V
Sbjct: 192 VISAISHLGDLELGRWVRAFIGRLGF-GVSVALGTALIDMFSRCGSIDESIVVFEKMAV- 249
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
+N+++WT +I+G +HG EA+ F M+K G++P+ G +EG
Sbjct: 250 -RNVLTWTALINGLGIHGRSMEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWD 308
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ + + + P + HYGC++DIL RAG L +A + +P + N ++WRT
Sbjct: 309 IFESIRKVYGMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMK-PNSIIWRT 360
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 84/197 (42%), Gaps = 14/197 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T +I L LG + A ++GF V + TAL DM+ G + +S +F
Sbjct: 185 DEVTMLSVISAISHLGDLELGRWVRAFIGRLGFGVSVALGTALIDMFSRCGSIDESIVVF 244
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+++ RN++TW +I GL GI RS EALA+F M +P +T V
Sbjct: 245 EKMAVRNVLTWTALINGL----GI------HGRSMEALAMFHSMRKSG-VQPDYVTFSGV 293
Query: 143 LPAIWKNGEVRNC-QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G V+ + + G + H C++D + G + A E +
Sbjct: 294 LVACSHGGLVKEGWDIFESIRKVYGMDPLLDHY-GCMVDILGRAGLLNEAYDFVERMPM- 351
Query: 202 RKNLVSWTTIISGFAMH 218
+ N + W T++ H
Sbjct: 352 KPNSIIWRTLLGACVNH 368
>gi|356527575|ref|XP_003532384.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61800-like [Glycine max]
Length = 577
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/317 (31%), Positives = 157/317 (49%), Gaps = 41/317 (12%)
Query: 18 LPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY-VNTALGDMYVSLGFLK 76
LPP D T+ F+++ L +L LH+ K G ++ +NT +G +Y +
Sbjct: 105 LPP--DFHTFPFVLKASAQLHSLSLAQSLHSQALKFGLLPDLFSLNTLIG-VYSIHHRVN 161
Query: 77 DSSKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNR 115
D+ KLF E P ++V++N +I GLVK W +I GYS +
Sbjct: 162 DAHKLFYECPHGDVVSYNALIHGLVKTRQISRARELFDEMPVRDEISWGTMIAGYSHLKL 221
Query: 116 SNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS 175
N+A+ LF M E +P I +++VL A + GE+ ++H Y KR D +++
Sbjct: 222 CNQAIELFNEMMRLE-VKPDNIALVSVLSACAQLGELEQGSIVHDY-IKRNRIRVDSYLA 279
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
L+D YAKCGC+ +A +FE S K + +W ++ GFA+HG G +E F RM G
Sbjct: 280 TGLVDLYAKCGCVETARDVFE--SCMEKYVFTWNAMLVGFAIHGEGSMVLEYFSRMVSEG 337
Query: 236 LKPNRSWRIGE-----------EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
+KP+ +G E + FD+M V + KHYGC+ D+L RAG +E+
Sbjct: 338 VKPDGVTLLGVLVGCSHAGLVLEARRIFDEMENVYGVKREGKHYGCMADMLARAGLIEEG 397
Query: 285 EEVASGIPSQITNVVVW 301
E+ +PS +V W
Sbjct: 398 VEMVKAMPSG-GDVFAW 413
>gi|147859488|emb|CAN83542.1| hypothetical protein VITISV_021357 [Vitis vinifera]
Length = 795
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 92/302 (30%), Positives = 152/302 (50%), Gaps = 36/302 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F++ +I + L N G QLHA K+G +S+V+V +A+ D Y L + ++ K F
Sbjct: 367 NQFSFGTVIPSATALQDLNSGRQLHACAIKMGLESNVFVGSAVVDFYAKLTSINEAQKAF 426
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
++ E N+V++ +I G +V W +I GYS+M + EA+
Sbjct: 427 EDTHEPNVVSYTTLIRGYLKKERFDDALALFRXMPERNVVSWNAMISGYSQMGYNEEAVN 486
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M E P+E T + A+ + + HG K FD+ + N L+
Sbjct: 487 LFVVMLR-EGXLPNERTFPCAISAVANIAALGMGRSFHGSAVKF-LGKFDVFIGNSLVSF 544
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG + + +F ++ +KN+VSW +I G+A HG G EA+ FE+MQ GL+PN
Sbjct: 545 YAKCGSMEESLLVF--NTLPKKNIVSWNALICGYANHGRGMEAIYFFEKMQDTGLRPNSV 602
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+G ++G +F+K E L +H+ C++D+L R+GR ++AE+
Sbjct: 603 TLLGLLLACNHSGLVDKGYSYFNKARVEEPGLLTPEHHACMVDLLSRSGRFKEAEKFLHE 662
Query: 291 IP 292
+P
Sbjct: 663 LP 664
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 86/194 (44%), Gaps = 41/194 (21%)
Query: 75 LKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134
L D+ KLFDE+P W+V V T I ++R + EA+ F RM A +P
Sbjct: 318 LWDACKLFDEVP-----NWDV-----VSATATIGCFARYHHHEEAIYFFSRMLALN-IKP 366
Query: 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
++ + V+P+ ++ + + +H K G + ++ V + ++D YAK I A K
Sbjct: 367 NQFSFGTVIPSATALQDLNSGRQLHACAIKMGLES-NVFVGSAVVDFYAKLTSINEAQKA 425
Query: 195 FEDT-----------------------------SVDRKNLVSWTTIISGFAMHGMGKEAV 225
FEDT + +N+VSW +ISG++ G +EAV
Sbjct: 426 FEDTHEPNVVSYTTLIRGYLKKERFDDALALFRXMPERNVVSWNAMISGYSQMGYNEEAV 485
Query: 226 ENFERMQKVGLKPN 239
F M + G PN
Sbjct: 486 NLFVVMLREGXLPN 499
>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
Length = 983
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 134/244 (54%), Gaps = 26/244 (10%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y G + D+ LFDE+P RN V+W + +++GY + EAL LF RM A
Sbjct: 287 YARAGRVTDARALFDEMPARNAVSW----------SAMVNGYVQAGDGREALGLFARMQA 336
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
+ P + ++ VL A + G + + +HGY + + + L+D YAKCG +
Sbjct: 337 -DGVRPDDTVLVGVLAACAQLGVLEQGKWVHGYLKANNIR-ITVFLGTALVDMYAKCGEM 394
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG--- 245
A ++F+ + KN+++WTT+I G AMHG G EA+E F +M+++G+KP+ IG
Sbjct: 395 QLAMEVFK--VMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALC 452
Query: 246 --------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITN 297
++G + FD MV + + P I+HYGC++D+L R G L +A E+ +P + +
Sbjct: 453 ACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMK-PD 511
Query: 298 VVVW 301
++W
Sbjct: 512 ALIW 515
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/219 (23%), Positives = 95/219 (43%), Gaps = 28/219 (12%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
++ C L G +H + V++ TAL DMY G ++ + ++F + E+N
Sbjct: 349 VLAACAQLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKN 408
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
++ W +I GL + R +EAL LF +M +P +I + L A
Sbjct: 409 VLAWTTMIKGL----------AMHGRGSEALELFSQMERLG-VKPDDIAFIGALCACTHT 457
Query: 150 GEVRNCQ-----LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
G V + ++ YG K + C++D A+ G + A ++ E +
Sbjct: 458 GLVDKGRELFDSMVRKYGIKPKIEHY-----GCMVDLLARNGLLNEAREMVEKMPMKPDA 512
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQK--VGLKPNRS 241
L+ W +++G H + VE E + K + L+P++S
Sbjct: 513 LI-WGALMAGCRFH----KNVELAEYVVKHWIELEPDKS 546
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 79/170 (46%), Gaps = 16/170 (9%)
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
R + D N LI YA+ G + A LF++ +N VSW+ +++G+ G G+EA
Sbjct: 270 RTAASVDASTFNTLITAYARAGRVTDARALFDEMPA--RNAVSWSAMVNGYVQAGDGREA 327
Query: 225 VENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLID 273
+ F RMQ G++P+ + +G E+G K+ ++ + + L+D
Sbjct: 328 LGLFARMQADGVRPDDTVLVGVLAACAQLGVLEQG-KWVHGYLKANNIRITVFLGTALVD 386
Query: 274 ILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQ 323
+ + G ++ A EV + + NV+ W T L ++ + L SQ
Sbjct: 387 MYAKCGEMQLAMEVFKVMKEK--NVLAWTTMIKGLAMHGRGSEALELFSQ 434
>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
Length = 444
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/259 (34%), Positives = 139/259 (53%), Gaps = 28/259 (10%)
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
TA+ Y G + ++ LFD L ER+ + WNV+I DGY++ NE L L
Sbjct: 10 TAMITCYAKYGMIDEARVLFDGLEERDAICWNVMI----------DGYAQHGLPNEGLLL 59
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
FR+M + P+E+T+LAVL A + G + + +H Y E G ++ V LID Y
Sbjct: 60 FRQMLNAK-VRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGI-GINVRVGTSLIDMY 117
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW 242
+KCG + A +FE S K++V+W +++ G+AMHG ++A+ F+ M +G +P
Sbjct: 118 SKCGSLEDARLVFERIS--NKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDIT 175
Query: 243 RIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
IG EG KFF M +E + P ++HYGC++++L RAG LE+A E+ +
Sbjct: 176 FIGVLNACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNM 235
Query: 292 PSQITNVVVWRT--GFLRL 308
+ V+W T G RL
Sbjct: 236 EID-QDPVLWGTLLGACRL 253
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 90/198 (45%), Gaps = 14/198 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T ++ C G +H+ G +V V T+L DMY G L+D+ +F
Sbjct: 71 NEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVF 130
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + +++V WN ++ GY+ S +AL LF+ M Y +P++IT + V
Sbjct: 131 ERISNKDVVAWNSMVV----------GYAMHGFSQDALRLFKEMCMIGY-QPTDITFIGV 179
Query: 143 LPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G V + + ++ G H C+++ + G + A +L ++ +D
Sbjct: 180 LNACSHAGLVSEGWKFFYSMKDEYGIEPKVEHYG-CMVNLLGRAGYLEEAYELVKNMEID 238
Query: 202 RKNLVSWTTIISGFAMHG 219
++ V W T++ +HG
Sbjct: 239 -QDPVLWGTLLGACRLHG 255
>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
Length = 723
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 155/292 (53%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT+S +++ C LS LG Q++A+ K+ S V +L MY G ++++ K F
Sbjct: 249 NHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAF 308
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D L E+NLV++N I++ Y++ S EA LF + T + T ++
Sbjct: 309 DVLFEKNLVSYNT----------IVNAYAKSLNSEEAFELFNEIEGAG-TGVNAFTFASL 357
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L G + + IH K GF + ++H+ N LI Y++CG I +A ++F + +
Sbjct: 358 LSGASSIGAIGKGEQIHSRILKSGFKS-NLHICNALISMYSRCGNIEAAFQVFNE--MGD 414
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
N++SWT++I+GFA HG A+E F +M + G+ PN I EGLK
Sbjct: 415 GNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKH 474
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F M E ++P ++HY C++D+L R+G LE+A E+ + +P + + +V RT
Sbjct: 475 FKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFK-ADALVLRT 525
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 94/329 (28%), Positives = 149/329 (45%), Gaps = 58/329 (17%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYV-SLGFLKDSSK 80
+ + ++ + R C +LG + K G F+S V V AL DM+V G L+ + K
Sbjct: 41 NEYCFTGVFRACSNKENISLGKIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYK 100
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD +P+RN+VTW ++IT + G+SR +A+ LF M Y P T+
Sbjct: 101 VFDRMPDRNVVTWTLMITRFQQL-----GFSR-----DAVDLFLDMVLSGYV-PDRFTLS 149
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC---GCIFSASKLFED 197
V+ A + G + + H K G + D+ V L+D YAKC G + A K+F+
Sbjct: 150 GVVSACAEMGLLSLGRQFHCLVMKSGLD-LDVCVGCSLVDMYAKCVADGSVDDARKVFDR 208
Query: 198 TSVDRKNLVSWTTIISGFAMH-GMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMV 256
V N++SWT II+G+ G +EA+E F M + +KPN F ++
Sbjct: 209 MPV--HNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFT---------FSSVL 257
Query: 257 EECEVLPDI---------------KHYGC----LIDILERAGRLEQAEEVASGIPSQITN 297
+ C L DI C LI + R G +E A + + + N
Sbjct: 258 KACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEK--N 315
Query: 298 VVVWRTGFLRLLINSYFFSPITLNSQRLF 326
+V + T ++N+Y +LNS+ F
Sbjct: 316 LVSYNT-----IVNAY---AKSLNSEEAF 336
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 16/220 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY---VSLGFLKDSS 79
D FT S ++ C + +LG Q H + K G V V +L DMY V+ G + D+
Sbjct: 144 DRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDAR 203
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
K+FD +P N+++W IITG V+ G EA+ LF M + +P+ T
Sbjct: 204 KVFDRMPVHNVMSWTAIITGYVQSGGC---------DREAIELFLEMVQGQ-VKPNHFTF 253
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+VL A ++ + ++ K + + V N LI Y++CG + +A K F+
Sbjct: 254 SSVLKACANLSDIWLGEQVYALVVKMRLASINC-VGNSLISMYSRCGNMENARKAFD--V 310
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+ KNLVS+ TI++ +A +EA E F ++ G N
Sbjct: 311 LFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVN 350
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 24/226 (10%)
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
LV W+ +I Y+ ++ EA++ F M C + P+E V A + ++I
Sbjct: 7 LVSWSALISCYANNEKAFEAISAFFDMLECGFY-PNEYCFTGVFRACSNKENISLGKIIF 65
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKC-GCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218
G+ K G+ D+ V LID + K G + SA K+F D DR N+V+WT +I+ F
Sbjct: 66 GFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVF-DRMPDR-NVVTWTLMITRFQQL 123
Query: 219 GMGKEAVENFERMQKVGLKPNRSWRIG------EEGL----KFFDKMVEECEVLPDIKHY 268
G ++AV+ F M G P+R G E GL + F +V + + D+
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVC-V 182
Query: 269 GC-LIDILERA---GRLEQAEEVASGIPSQITNVVVWR---TGFLR 307
GC L+D+ + G ++ A +V +P + NV+ W TG+++
Sbjct: 183 GCSLVDMYAKCVADGSVDDARKVFDRMP--VHNVMSWTAIITGYVQ 226
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 100/214 (46%), Gaps = 29/214 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++FT++ L+ ++ G Q+H+ K GF+S++++ AL MY G ++ + ++F
Sbjct: 350 NAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVF 409
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+ + N+++W +ITG K G+ + AL F +M + P+E+T +AV
Sbjct: 410 NEMGDGNVISWTSMITGFAK-----HGF-----ATRALETFHKMLEAGVS-PNEVTYIAV 458
Query: 143 LPAIWKNGEV-------RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
L A G + ++ ++ HG + A C++D + G + A +L
Sbjct: 459 LSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYA-------CVVDLLGRSGHLEEAMELV 511
Query: 196 EDTSVDRKNLVSWTTIISGFAMHG---MGKEAVE 226
LV T + +HG +GK A E
Sbjct: 512 NSMPFKADALV-LRTFLGACRVHGNMDLGKHAAE 544
>gi|296082950|emb|CBI22251.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 167/317 (52%), Gaps = 45/317 (14%)
Query: 23 DSFTYSFLI--RTCVTLSYPNL--GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
D FT++FL+ R+ + + P + ++H K+GF H++V AL +Y + G +
Sbjct: 94 DGFTFTFLLKGRSRMRIDLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAA 153
Query: 79 SKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSN 117
++F+E+ ++V+W+ ++ +V WT ++ GY++ RS
Sbjct: 154 HQVFNEMVGADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSR 213
Query: 118 EALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
EAL LFR M P E+ +++V+ A G++ +H Y ++ GF + + + N
Sbjct: 214 EALELFREMRDVG-VRPDEVAMVSVISACTSLGDLETGFEVHRYIDENGF-GWMVSLCNA 271
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
LID YAKCGC+ A ++F + ++RK+L++W ++IS A HG ++A F M G++
Sbjct: 272 LIDMYAKCGCMDLAWQVFNN--MERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIR 329
Query: 238 PN-------------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
P+ + W ++G F+ M + V ++HYGC++D+L RAGRLE+A
Sbjct: 330 PDGVTFLALLTAYTHKGWV--DDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEA 387
Query: 285 EEVASGIPSQITNVVVW 301
++ + + S N VVW
Sbjct: 388 YKLITSM-SMPCNDVVW 403
>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
Length = 724
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 153/290 (52%), Gaps = 27/290 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT S L++ + + GTQLHA K G+QS VYV +AL DMY G + + F
Sbjct: 188 NHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAF 247
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +P ++ V+WN +I+ G++R AL L +M + +P+ T +V
Sbjct: 248 DGMPTKSEVSWNALIS----------GHARKGEGEHALHLLWKMQRKNF-QPTHFTYSSV 296
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
A G + + +H + K G + N L+D YAK G I A ++F+ + +
Sbjct: 297 FSACASIGALEQGKWVHAHMIKSGLKLIAF-IGNTLLDMYAKAGSIDDAKRVFD--RLVK 353
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKF 251
++VSW T+++G A HG+GKE ++ FE+M ++G++PN + +EGL +
Sbjct: 354 PDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYY 413
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F+ ++++ +V PD+ HY +D+L R G L++AE +P + T VW
Sbjct: 414 FE-LMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPT-AAVW 461
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 81/290 (27%), Positives = 138/290 (47%), Gaps = 31/290 (10%)
Query: 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
YS L++ C L G +HA F +H+ + + +MY G L D+ ++FDE+
Sbjct: 90 YSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEM 149
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
P +++VT WT +I G+S+ NR +AL LF +M +P+ T+ ++L A
Sbjct: 150 PTKDMVT----------WTALIAGFSQNNRPRDALLLFPQMLRLGL-QPNHFTLSSLLKA 198
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
+ +H + K G+ + ++V + L+D YA+CG + +A F+ + K+
Sbjct: 199 SGSEHGLDPGTQLHAFCLKYGYQS-SVYVGSALVDMYARCGHMDAAQLAFD--GMPTKSE 255
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---------SWRIG--EEGLKFFDK 254
VSW +ISG A G G+ A+ +MQ+ +P IG E+G
Sbjct: 256 VSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAH 315
Query: 255 MVEECEVLPDIKHYG-CLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
M++ L I G L+D+ +AG ++ A+ V + +VV W T
Sbjct: 316 MIKSGLKL--IAFIGNTLLDMYAKAGSIDDAKRVFDRLVK--PDVVSWNT 361
>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 149/278 (53%), Gaps = 37/278 (13%)
Query: 49 VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK------ 102
VF ++ + + NT + + Y +G + ++ +LFDE+PERNLV+WN ++ G VK
Sbjct: 283 VFDRMVCRDVISWNTMI-NGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNVED 341
Query: 103 ---------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIW 147
W ++ Y++ + NEALALF +M A +P+E T++++L A
Sbjct: 342 AFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVG-VKPTEATVVSLLSACA 400
Query: 148 KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
G + +H Y I V L+D YAKCG I A+++F +++ K++++
Sbjct: 401 HLGALDKGLHLHTYINDNRIEVNSI-VGTALVDMYAKCGKISLATQVF--NAMESKDVLA 457
Query: 208 WTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMV 256
W TII+G A+HG KEA + F+ M++ G++PN + +EG K D M
Sbjct: 458 WNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMS 517
Query: 257 EECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
+ P ++HYGC+ID+L RAG LE+A E+ +P +
Sbjct: 518 SSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPME 555
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/297 (23%), Positives = 136/297 (45%), Gaps = 46/297 (15%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D TY F+I+ C S G +H K GF+ Y+ ++L +Y + L + +LF
Sbjct: 194 DHMTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLF 253
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE-PSEITILA 141
+ R++V+WN +I G VK + G++RM +F RM + + I A
Sbjct: 254 NLCSARDVVSWNAMIDGYVKHVEM--GHARM--------VFDRMVCRDVISWNTMINGYA 303
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
++ G++ + + +R ++ N ++ + KCG + A LF +
Sbjct: 304 IV------GKIDEAKRLFDEMPERNLVSW-----NSMLAGFVKCGNVEDAFGLFSEMPC- 351
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
+++VSW ++++ +A G EA+ F++M+ VG+KP + + ++GL
Sbjct: 352 -RDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLH 410
Query: 251 FF----DKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
D +E ++ L+D+ + G++ A +V + + S+ +V+ W T
Sbjct: 411 LHTYINDNRIEVNSIVGT-----ALVDMYAKCGKISLATQVFNAMESK--DVLAWNT 460
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/224 (27%), Positives = 97/224 (43%), Gaps = 26/224 (11%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T L+ C L + G LH + + + V TAL DMY G + ++++F+ +
Sbjct: 391 TVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAM 450
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
++++ WN II G+ I G + EA LF+ M EP++IT +A+L A
Sbjct: 451 ESKDVLAWNTIIAGMA-----IHGNVK-----EAQQLFKEMKEAG-VEPNDITFVAILSA 499
Query: 146 IWKNGEVRNCQ-LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
G V Q L+ G H C+ID A+ G + A +L ++ N
Sbjct: 500 CSHAGMVDEGQKLLDCMSSSYGIEPKVEHYG-CVIDLLARAGFLEEAMELIGTMPME-PN 557
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVG-----LKPNRSWR 243
+ ++ G +HG NFE + VG L+P S R
Sbjct: 558 PSALGALLGGCRIHG-------NFELGEMVGKRLINLQPCHSGR 594
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 90/211 (42%), Gaps = 24/211 (11%)
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
+ +I S EAL L+ M +P +T V+ A ++ L+H +
Sbjct: 163 YNSLIRALSSSKTPLEALPLYHTMLQ-SGLKPDHMTYPFVIKACNESSVTWFGLLVHTHV 221
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
K GF D ++ + LI YA + +A +LF S +++VSW +I G+ H
Sbjct: 222 VKSGFEC-DSYIVSSLIHLYANGKDLGAAKQLFNLCSA--RDVVSWNAMIDGYVKHVEMG 278
Query: 223 EAVENFERMQKVGLKPNRSWR--------IG--EEGLKFFDKMVEECEVLPDIKHYGCLI 272
A F+RM + SW +G +E + FD+M E ++ + ++
Sbjct: 279 HARMVFDRMV---CRDVISWNTMINGYAIVGKIDEAKRLFDEMPER-----NLVSWNSML 330
Query: 273 DILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ G +E A + S +P + +VV W +
Sbjct: 331 AGFVKCGNVEDAFGLFSEMPCR--DVVSWNS 359
>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 602
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 161/327 (49%), Gaps = 38/327 (11%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
++ ++++ L+ CV + L Q H GF S++ +++++ D Y + D+ +L
Sbjct: 181 YNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRL 240
Query: 82 FDELPERNLVTWNVIITGL---------------------VKWTGIIDGYSRMNRSNEAL 120
FDE+ R+++ W +++G V WT +I GY+R + ++AL
Sbjct: 241 FDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKAL 300
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LF +M A P + T + L A + + + IHGY + I VS+ LID
Sbjct: 301 ELFTKMMALN-IRPDQFTFSSCLCASASIASLNHGKQIHGYLIRTNIRPNTIVVSS-LID 358
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
Y+KCGC+ +L D D+ ++V W TIIS A HG G+EA++ F+ M ++G+KP+R
Sbjct: 359 MYSKCGCL-EVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDR 417
Query: 241 SWRI-----------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
I +EGL+ ++ + V+P+ +HY CLID+L RAG +
Sbjct: 418 ITLIVLLNACSHSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLLGRAGHFDTLMNQLE 477
Query: 290 GIPSQITNVVVWRT--GFLRLLINSYF 314
+P + N +W G R+ N F
Sbjct: 478 KMPCK-PNDEIWNALLGVCRMHGNIEF 503
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 118/270 (43%), Gaps = 57/270 (21%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSSKLF 82
S T ++L++ C LG +H G + + ++ L +MY G + K+F
Sbjct: 50 SKTLAYLLQQCANTKSLKLGKWVHLHLKVTGLKRPNTFLANHLINMYSKCGDYPSAYKVF 109
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
DE+ RNL +WN +++G +V W ++ Y++ N+AL
Sbjct: 110 DEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDKMPEKDVVSWNTMVIAYAKSGFCNDALR 169
Query: 122 LFR--RMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
+R R Y E S +L + + E+ + HG GF + ++ +S+ ++
Sbjct: 170 FYRELRRLGIGYNEYSFAGLLNICVKV---KELELSKQAHGQVLVAGFLS-NLVISSSVL 225
Query: 180 DTYAKCGCIFSASKLFE---------------------DTSVDR--------KNLVSWTT 210
D YAKC + A +LF+ D R KN V+WT+
Sbjct: 226 DAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAWTS 285
Query: 211 IISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+I+G+A H +G +A+E F +M + ++P++
Sbjct: 286 LIAGYARHDLGHKALELFTKMMALNIRPDQ 315
>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g08820-like [Vitis vinifera]
Length = 686
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 154/290 (53%), Gaps = 26/290 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DSFT ++ C L N G +H ++G +V+V T+L DMY G ++ + +F
Sbjct: 212 DSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVF 271
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +PE+++V+W +I GY+ EA+ LF +M E +P T++ V
Sbjct: 272 DGMPEKDIVSWG----------AMIQGYALNGLPKEAIDLFLQMQR-ENVKPDCYTVVGV 320
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + G + + + G ++ F ++ + LID YAKCG + A ++F+ +
Sbjct: 321 LSACARLGALELGEWVSGLVDRNEF-LYNPVLGTALIDLYAKCGSMSRAWEVFK--GMKE 377
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
K+ V W IISG AM+G K + F +++K+G+KP+ + IG +EG ++
Sbjct: 378 KDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRY 437
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F+ M + P I+HYGC++D+L RAG L++A ++ +P + N +VW
Sbjct: 438 FNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPME-ANAIVW 486
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 99/333 (29%), Positives = 171/333 (51%), Gaps = 38/333 (11%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L ++FT+ F+++ C L LG ++H + K GF V+V T+L +Y G+L+D+ K
Sbjct: 109 LPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHK 168
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD++P++N+V+ WT II GY + + EA+ +FRR+ P TI+
Sbjct: 169 VFDDIPDKNVVS----------WTAIISGYIGVGKFREAIDMFRRLLEMNLA-PDSFTIV 217
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
VL A + G++ + + IH + G ++ V L+D YAKCG + A +F+ +
Sbjct: 218 RVLSACTQLGDLNSGEWIHKCIMEMGM-VRNVFVGTSLVDMYAKCGNMEKARSVFD--GM 274
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN---------RSWRIGEEGL-K 250
K++VSW +I G+A++G+ KEA++ F +MQ+ +KP+ R+G L +
Sbjct: 275 PEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGE 334
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLI 310
+ +V+ E L + LID+ + G + +A EV G+ + + VVW L +
Sbjct: 335 WVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEK--DRVVWNAIISGLAM 392
Query: 311 NSYFFSPITLNSQRLFFFPAALYALTQILGFKP 343
N Y ++ F L+ + LG KP
Sbjct: 393 NGYV---------KISF---GLFGQVEKLGIKP 413
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/231 (27%), Positives = 111/231 (48%), Gaps = 26/231 (11%)
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
LF ++ + N+ WN +I GLV N + F + E P+ T
Sbjct: 68 LFHQIKQPNIFLWNTMIRGLVS-----------NDCFDDAIEFYGLMRSEGFLPNNFTFP 116
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
VL A + +++ IH K GF+ D+ V L+ YAKCG + A K+F+D +
Sbjct: 117 FVLKACARLLDLQLGVKIHTLVVKGGFDC-DVFVKTSLVCLYAKCGYLEDAHKVFDD--I 173
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---------SWRIGE-EGLK 250
KN+VSWT IISG+ G +EA++ F R+ ++ L P+ ++G+ +
Sbjct: 174 PDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGE 233
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ K + E ++ ++ L+D+ + G +E+A V G+P + ++V W
Sbjct: 234 WIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEK--DIVSW 282
>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
Length = 897
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 154/297 (51%), Gaps = 38/297 (12%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKV----------GFQSHVYVNTALGDMYVSLGFLKDSS 79
++ C +L + GT++HA K G + V AL DMY K +
Sbjct: 414 VLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAAR 473
Query: 80 KLFDELP--ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY-TEPSE 136
+FD++P ERN+VTW V+I G+++ SN+AL LF M + Y P+
Sbjct: 474 SIFDDIPLEERNVVTWTVMI----------GGHAQYGDSNDALKLFVEMISEPYGVAPNA 523
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRG-FNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
TI +L A +R + IH Y + + + V+NCLID Y+KCG + +A +F
Sbjct: 524 YTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVF 583
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRI 244
+ S+ +K+ +SWT++++G+ MHG G EA++ F++M+K G P+ +
Sbjct: 584 D--SMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGM 641
Query: 245 GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
++GL +FD M + + P +HY C ID+L R+GRL++A +P + T VVW
Sbjct: 642 VDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPT-AVVW 697
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 113/216 (52%), Gaps = 15/216 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT +++ C L G+ H + GF+S+V++ AL MY G L+++S +F
Sbjct: 161 DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 220
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE-----I 137
DE+ +R I ++ W I+ + + + + AL LF +M + +P+ I
Sbjct: 221 DEITQRG-------IDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDII 273
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
+I+ +LPA V + +HG + G D+ V N LID YAKCG + +A K+F
Sbjct: 274 SIVNILPACGSLKAVPQTKEVHGNAIRNG-TFPDVFVGNALIDAYAKCGLMENAVKVF-- 330
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
++ K++VSW +++G++ G + A E F+ M+K
Sbjct: 331 NMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRK 366
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 117/246 (47%), Gaps = 37/246 (15%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
++ C +L ++H + G V+V AL D Y G ++++ K+F+ + ++
Sbjct: 278 ILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKD 337
Query: 90 LVTWNVIITG-------------------------LVKWTGIIDGYSRMNRSNEALALFR 124
+V+WN ++ G +V WT +I GYS+ S+EAL LFR
Sbjct: 338 VVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFR 397
Query: 125 RMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR---------GFNAFDIHVS 175
+M + P+ +TI++VL A G IH Y K G D+ V
Sbjct: 398 QMIF-SGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVY 456
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM--QK 233
N LID Y+KC +A +F+D ++ +N+V+WT +I G A +G +A++ F M +
Sbjct: 457 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 516
Query: 234 VGLKPN 239
G+ PN
Sbjct: 517 YGVAPN 522
>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Vitis vinifera]
Length = 625
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 85/286 (29%), Positives = 156/286 (54%), Gaps = 28/286 (9%)
Query: 23 DSFTYSFLIRTCVTLSYP-NLGTQLHAVFSK----VGFQSHVYVNTALGDMYVSLGFLKD 77
D++T S L+ C + G +LH K +G S V++ L DMY +
Sbjct: 227 DAYTISSLLPLCDGDKGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVV 286
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
++FD + RN+ +W T +I+GY S+EAL+LFR M + EP+ +
Sbjct: 287 GRRVFDRMKCRNVFSW----------TAMINGYVENGDSDEALSLFRDMQVIDGIEPNRV 336
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
++++VLPA + + + IHG+ ++ N ++ + N LID Y+KCG + SA ++FED
Sbjct: 337 SLVSVLPACSSFSGLLSGRQIHGFAVRKELNN-EVSLCNALIDMYSKCGSLDSARRVFED 395
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------E 246
S+ K+ +SW+++ISG+ +HG G+EA+ +++M + G++P+ +G
Sbjct: 396 DSL-CKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRPDMITTVGILSACSRSGLVN 454
Query: 247 EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
EGL + ++ + + P ++ + C++D+L RAG+L+ A + +P
Sbjct: 455 EGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDFIKAMP 500
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 106/227 (46%), Gaps = 19/227 (8%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D FT S L + L G +H ++GF S V ++ MY G ++S K
Sbjct: 121 LPDDFTLSTLSKVSSELGALFSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRK 180
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FDE+ RN +WNV+I G + G N E ++M E P TI
Sbjct: 181 VFDEMTIRNSGSWNVLIAGYA-----VSG--NCNFREETWEFVKQMQMDE-VRPDAYTIS 232
Query: 141 AVLP------AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
++LP W G +C ++ G ++ D+H+ CLID Y++ + ++
Sbjct: 233 SLLPLCDGDKGKWDYGRELHCYIVKNE-LVLGLDS-DVHLGCCLIDMYSRSNKVVVGRRV 290
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNR 240
F+ +N+ SWT +I+G+ +G EA+ F MQ + G++PNR
Sbjct: 291 FDRMKC--RNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNR 335
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 124/297 (41%), Gaps = 39/297 (13%)
Query: 35 VTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWN 94
VT L Q H+ +G + + T L Y S +FD L +N+ WN
Sbjct: 34 VTHKSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWN 93
Query: 95 VIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRN 154
+I+GY++ NEA LF +M + + P + T+ + + G + +
Sbjct: 94 ----------SLINGYAKNRLYNEAFQLFNQMCSSDVL-PDDFTLSTLSKVSSELGALFS 142
Query: 155 CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISG 214
+ IHG + GF + D V+N ++ Y KCG + K+F++ ++ +N SW +I+G
Sbjct: 143 GKSIHGKSIRIGFVS-DTVVANSIMSMYCKCGNFEESRKVFDEMTI--RNSGSWNVLIAG 199
Query: 215 FAMHG---MGKEAVENFERMQKVGLKPNR---------------SWRIGEEGLKFFDKMV 256
+A+ G +E E ++MQ ++P+ W G E + K
Sbjct: 200 YAVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDKGKWDYGRELHCYIVKNE 259
Query: 257 EECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSY 313
+ D+ CLID+ R+ ++ V + + NV W +IN Y
Sbjct: 260 LVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRM--KCRNVFSWTA-----MINGY 309
>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
Length = 825
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/294 (30%), Positives = 150/294 (51%), Gaps = 27/294 (9%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L + +TY ++R C +L G Q+HA K GFQ V+ L DMYV G ++
Sbjct: 461 LANKYTYVGILRCCTSLMDLRFGCQVHACVLKSGFQGDYDVSKMLLDMYVQAGCFTNARL 520
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD L ER++ +W V+++ Y++ + +A+ FR M E P++ T+
Sbjct: 521 VFDRLKERDVFSWTVVMS----------TYAKTDEGEKAIECFRSMLR-ENKRPNDATLA 569
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
L + + +H Y K G+N+ VS+ L+D Y KCG + A LF+++
Sbjct: 570 TSLSVCSDLACLGSGLQLHSYTIKSGWNSS--VVSSALVDMYVKCGNLADAEMLFDES-- 625
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
D +LV W TII G+A HG G +A+E F+ M G P+ +G +EG
Sbjct: 626 DTHDLVEWNTIICGYAQHGHGYKALEAFQEMIDEGNVPDEITFVGVLSACSHAGLLDEGR 685
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++F + + P ++HY C++DIL +AG+L +AE + + +P + +W+T
Sbjct: 686 RYFKLLSSVYGITPTLEHYACMVDILAKAGKLAEAESLINEMP-LTPDASLWKT 738
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 108/223 (48%), Gaps = 14/223 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F + ++ C S Q+HA K+ YV+++L + YVS G + + +
Sbjct: 160 NGFALAAALKACTVGSDLGFTPQVHAQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERAL 219
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ P R+ V+WN +++ Y+R + + +F ++ E S+ T+ V
Sbjct: 220 LDSPVRSDVSWN----------ALLNEYARDGDYAKVMLVFDKLVE-SGDEISKYTLPTV 268
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + G ++ Q +HG KRG D ++NCLI+ Y+KC A ++F +D
Sbjct: 269 LKCCMELGLAKSGQAVHGLVIKRGLET-DRVLNNCLIEMYSKCLSAEDAYEVF--ARIDE 325
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG 245
++V + +IS F H M EA + F +M +G+KPN+ +G
Sbjct: 326 PDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVG 368
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 97/200 (48%), Gaps = 16/200 (8%)
Query: 41 NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGL 100
NL +HA K GF V A+ MYV G ++D+ FD + ++ +WN +++G
Sbjct: 380 NLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASWNTLLSGF 439
Query: 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVR-NCQLIH 159
++G N L +F+ + CE ++ T + +L ++R CQ +H
Sbjct: 440 --YSG--------NNCEHGLRIFKEL-ICEGVLANKYTYVGILRCCTSLMDLRFGCQ-VH 487
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
K GF D VS L+D Y + GC +A +F+ + +++ SWT ++S +A
Sbjct: 488 ACVLKSGFQG-DYDVSKMLLDMYVQAGCFTNARLVFD--RLKERDVFSWTVVMSTYAKTD 544
Query: 220 MGKEAVENFERMQKVGLKPN 239
G++A+E F M + +PN
Sbjct: 545 EGEKAIECFRSMLRENKRPN 564
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 97/211 (45%), Gaps = 16/211 (7%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
+Y+ ++ C G LHA + G + +++ +L +MY G L D+ +FD +
Sbjct: 62 SYAAALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGM 121
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
P R++V W +++ + + + AL LF M+ E P+ + A L A
Sbjct: 122 PHRDVVAWTAMVSAI----------TAAGDAGAALRLFAEMSE-EGVVPNGFALAAALKA 170
Query: 146 IWKNGEVRNCQLIHGYGEK-RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
++ +H K G FD +VS+ L++ Y CG + A + D+ V ++
Sbjct: 171 CTVGSDLGFTPQVHAQAVKLEGL--FDPYVSSSLVEAYVSCGEVDVAERALLDSPV--RS 226
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
VSW +++ +A G + + F+++ + G
Sbjct: 227 DVSWNALLNEYARDGDYAKVMLVFDKLVESG 257
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/248 (20%), Positives = 113/248 (45%), Gaps = 24/248 (9%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
+T +++ C+ L G +H + K G ++ +N L +MY +D+ ++F
Sbjct: 263 YTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLNNCLIEMYSKCLSAEDAYEVFAR 322
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ E ++V +++I+ + R + + EA +F +M+ +P++ T + +
Sbjct: 323 IDEPDVVHCSLMISC----------FDRHDMAPEAFDIFMQMSDMG-VKPNQYTFVGLAI 371
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
+ G+V C+ IH + K GF+ V + ++ Y K G + A F+ + +
Sbjct: 372 VASRTGDVNLCRSIHAHIVKSGFSRTK-GVCDAIVGMYVKTGAVQDAILAFD--LMQGPD 428
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPD 264
+ SW T++SGF + + F+ + G+ N+ +G ++ C L D
Sbjct: 429 IASWNTLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVG---------ILRCCTSLMD 479
Query: 265 IKHYGCLI 272
++ +GC +
Sbjct: 480 LR-FGCQV 486
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
D + + L++ Y KCG + A +F+ + +++V+WT ++S G A+ F
Sbjct: 94 DAFLHDSLLNMYCKCGRLADARSVFD--GMPHRDVVAWTAMVSAITAAGDAGAALRLFAE 151
Query: 231 MQKVGLKPN 239
M + G+ PN
Sbjct: 152 MSEEGVVPN 160
>gi|7671499|emb|CAB89340.1| putative protein [Arabidopsis thaliana]
Length = 514
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 166/349 (47%), Gaps = 74/349 (21%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTAL-------GDMYVSLGFL 75
D +T++F+++ C L + + G H + GF + YV AL GD+ ++
Sbjct: 77 DRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELF 136
Query: 76 KDSSK------------------------LFDELPERNLVTWNVIITGLVK--------- 102
DS+K LFDE+P ++ V WNV+ITG +K
Sbjct: 137 DDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARE 196
Query: 103 ------------WTGIIDGYSRMNRSNEALALFRRMA-ACEYTEPSEITILAVLPAIWKN 149
W +I GY EAL +F+ M A E+ P +TIL++L A
Sbjct: 197 LFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEH--PDVVTILSLLSACAVL 254
Query: 150 GEVRNCQLIHGYGEKRGFNAFDIHVS----NCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
G++ + +H Y + + I+V N LID YAKCG I A ++F V ++L
Sbjct: 255 GDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFR--GVKDRDL 312
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDK 254
+W T+I G A+H + ++E FE MQ++ + PN IG +EG K+F
Sbjct: 313 STWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSL 371
Query: 255 MVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
M + + P+IKHYGC++D+L RAG+LE+A + + N +VWRT
Sbjct: 372 MRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIE-PNAIVWRT 419
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 77/159 (48%), Gaps = 14/159 (8%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT 132
G LK + KLFDE+P+ ++ N ++ G ++ + + ++L+ M
Sbjct: 26 GALKYAHKLFDEIPKPDVSICN----------HVLRGSAQSMKPEKTVSLYTEMEK-RGV 74
Query: 133 EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSAS 192
P T VL A K N HG + GF + +V N LI +A CG + AS
Sbjct: 75 SPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGF-VLNEYVKNALILFHANCGDLGIAS 133
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
+LF+D++ K V+W+++ SG+A G EA+ F+ M
Sbjct: 134 ELFDDSAKAHK--VAWSSMTSGYAKRGKIDEAMRLFDEM 170
>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 874
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 152/312 (48%), Gaps = 38/312 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKL 81
+S T ++ C L G ++ + K G + ++ + AL DM+ S G + + +
Sbjct: 238 NSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGV 297
Query: 82 FDELPERNLVTWNVIITGL---------------------VKWTGIIDGYSRMNRSNEAL 120
FDE+ R++++W I+TG V WT +IDGY RMNR E L
Sbjct: 298 FDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVL 357
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LFR M +P E T++++L A G + + Y +K D + N LID
Sbjct: 358 TLFRDMQMSN-VKPDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKN-DTFIGNALID 415
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
Y KCG + A K+F + + +K+ +WT +I G A +G G+EA+ F M + + P+
Sbjct: 416 MYFKCGNVEKAKKIFNE--MQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDE 473
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
IG +G FF M + + P++ HYGC++D+L RAG L++A EV
Sbjct: 474 ITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIM 533
Query: 290 GIPSQITNVVVW 301
+P + N +VW
Sbjct: 534 NMPVK-PNSIVW 544
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 100/198 (50%), Gaps = 18/198 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQL--HAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSS 79
D FT+ FL++ G L HAV GF S+++V ++ G + +
Sbjct: 134 DGFTFPFLLKGFTKDMALKYGKVLLNHAVIH--GFLDSNLFVQKGFIHLFSLCGLVNYAR 191
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM-AACEYTEPSEIT 138
K+FD +VTWNV+++G Y+R R E+ LF M CE P+ +T
Sbjct: 192 KIFDMGDGWEVVTWNVVLSG----------YNRFKRYEESKRLFIEMEKKCECVSPNSVT 241
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
++ +L A K ++ + I+ K G ++ + N LID +A CG + +A +F++
Sbjct: 242 LVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDE- 300
Query: 199 SVDRKNLVSWTTIISGFA 216
+ ++++SWT+I++GFA
Sbjct: 301 -MKTRDVISWTSIVTGFA 317
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 131/301 (43%), Gaps = 50/301 (16%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQS-HVYVNTAL--------GDMYVSLGFLKDSSK 80
L+ TC T+ N Q+H+ K G S H+++ + GD+Y + K
Sbjct: 41 LLETCNTMYEIN---QIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYA-------RK 90
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FDE+P+ ++ WN +I GYSR+N S ++L++ M +P T
Sbjct: 91 VFDEIPQPSVFIWNT----------MIKGYSRINCSESGVSLYKLMLV-HNIKPDGFTFP 139
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+L K+ ++ +++ + GF ++ V I ++ CG + A K+F+
Sbjct: 140 FLLKGFTKDMALKYGKVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMG-- 197
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV--GLKPN-----------RSWRIGEE 247
D +V+W ++SG+ +E+ F M+K + PN +
Sbjct: 198 DGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVG 257
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR---TG 304
G ++K ++E V P++ LID+ G ++ A V + ++ +V+ W TG
Sbjct: 258 GKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTR--DVISWTSIVTG 315
Query: 305 F 305
F
Sbjct: 316 F 316
>gi|242036805|ref|XP_002465797.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
gi|241919651|gb|EER92795.1| hypothetical protein SORBIDRAFT_01g045970 [Sorghum bicolor]
Length = 531
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 99/346 (28%), Positives = 166/346 (47%), Gaps = 70/346 (20%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS--- 79
D T+ F++R C + G Q+HA K G +S +V AL M+ + G L ++
Sbjct: 113 DKRTFPFVLRACAAMGASETGAQVHAHVVKAGCESDAFVRNALIGMHATCGDLGAAAALF 172
Query: 80 ----------------------------KLFDELPERNLVTWNVIITG------------ 99
+LFDE P ++LV+WNV+IT
Sbjct: 173 DGEAREDAVAWSAMISGFARRGDIGAARELFDESPVKDLVSWNVMITAYAKLGDMAPARE 232
Query: 100 ---------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
+V W +I GY R +A+ LF +M A +P +T+L++L A +G
Sbjct: 233 LFDGAPDRDVVSWNAMISGYVRCGSHKQAMELFEQMQAMG-EKPDTVTMLSLLSACADSG 291
Query: 151 EVRNCQLIHGYGEKRGFNAF--DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSW 208
++ + +H + R F+ + N LID YAKCG + SA ++F + KN+ +W
Sbjct: 292 DMDAGRRLHRFLSGR-FSRIGPSTVLGNALIDMYAKCGSMTSALEVF--WLMQDKNVSTW 348
Query: 209 TTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVE 257
+II G A+HG EA++ F++M + +KP+ + ++G ++F+ M +
Sbjct: 349 NSIIGGLALHGHVTEAIDVFQKMLQGNVKPDEITFVAVLVACSHGGMVDKGHEYFNLMQQ 408
Query: 258 ECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ P++KHYGC++D+L RAG L++A E + + N V+WRT
Sbjct: 409 RYMIEPNVKHYGCMVDMLSRAGLLKEAFEFIGTMKIE-PNPVIWRT 453
>gi|125532120|gb|EAY78685.1| hypothetical protein OsI_33787 [Oryza sativa Indica Group]
Length = 493
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/305 (29%), Positives = 155/305 (50%), Gaps = 39/305 (12%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKLFD 83
T+ FL R L+ P L +HA + G ++V+ +L MY + + +LFD
Sbjct: 63 LTFPFLARAAARLASPRLARAVHAQPLRRGLLPQDLHVSNSLVHMYAACALPGLARRLFD 122
Query: 84 ELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALAL 122
E+P N V+WN ++ G +V W+ +IDG + EALA+
Sbjct: 123 EIPRPNHVSWNALLDGYAKCRDLPAARRVFARMPQRDVVSWSAMIDGCVKCGEHREALAV 182
Query: 123 FRRMAAC----EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
F M A + +++T+++VL A G++ + +H Y E+ GF +I ++ L
Sbjct: 183 FEMMEATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGF-PLNIRLATSL 241
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
+D YAKCG I A ++F V+ +++ W +I G A+HGM +E+++ F++M+ G+ P
Sbjct: 242 VDMYAKCGAIVEALEVFHAVPVESTDVLIWNAVIGGLAVHGMSRESLQMFQKMEHAGVVP 301
Query: 239 NR-----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ + +E +FF + +E + P ++HY CL+D+L RAGRLE+A V
Sbjct: 302 DEITYLCLLSACVHGGLVDEAWRFF-RSLEAQRLRPHVEHYACLVDVLGRAGRLEEAYGV 360
Query: 288 ASGIP 292
+P
Sbjct: 361 VKSMP 365
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 72/145 (49%), Gaps = 18/145 (12%)
Query: 173 HVS-NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
HVS N L+D YAKC + +A ++F + ++++VSW+ +I G G +EA+ FE M
Sbjct: 129 HVSWNALLDGYAKCRDLPAARRVF--ARMPQRDVVSWSAMIDGCVKCGEHREALAVFEMM 186
Query: 232 QKV-----GLKPNRSWRIGEEGL----------KFFDKMVEECEVLPDIKHYGCLIDILE 276
+ G++ N + G + + +EE +I+ L+D+
Sbjct: 187 EATAARHDGVRANDVTMVSVLGACAHLGDLVRGRKMHRYLEEHGFPLNIRLATSLVDMYA 246
Query: 277 RAGRLEQAEEVASGIPSQITNVVVW 301
+ G + +A EV +P + T+V++W
Sbjct: 247 KCGAIVEALEVFHAVPVESTDVLIW 271
>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
mitochondrial-like [Glycine max]
Length = 647
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 154/290 (53%), Gaps = 27/290 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT S L++ C ++ N G Q+HA K G S+V+V ++L DMY G+L ++ +F
Sbjct: 174 NEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVF 233
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D+L +N V+WN +I GY+R EALALF RM E P+E T A+
Sbjct: 234 DKLGCKNEVSWNALIA----------GYARKGEGEEALALFVRMQR-EGYRPTEFTYSAL 282
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + G + + +H + K +V N L+ YAK G I A K+F+ + +
Sbjct: 283 LSSCSSMGCLEQGKWLHAHLMKSSQKLVG-YVGNTLLHMYAKSGSIRDAEKVFD--KLVK 339
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKF 251
++VS +++ G+A HG+GKEA + F+ M + G++PN R+ +EG +
Sbjct: 340 VDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHY 399
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F ++ + + P + HY ++D+L RAG L+QA+ +P + T V +W
Sbjct: 400 FG-LMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPT-VAIW 447
Score = 109 bits (272), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 114/216 (52%), Gaps = 14/216 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D Y+ L++ C L G +H F+ + + +L MY G L+ + +LF
Sbjct: 73 DRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLF 132
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+P R++V+ WT +I GY++ +R+++AL LF RM + + EP+E T+ ++
Sbjct: 133 DEMPHRDMVS----------WTSMITGYAQNDRASDALLLFPRMLS-DGAEPNEFTLSSL 181
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ + IH K G ++ ++ V + L+D YA+CG + A +F+
Sbjct: 182 VKCCGYMASYNCGRQIHACCWKYGCHS-NVFVGSSLVDMYARCGYLGEAMLVFDKLGC-- 238
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
KN VSW +I+G+A G G+EA+ F RMQ+ G +P
Sbjct: 239 KNEVSWNALIAGYARKGEGEEALALFVRMQREGYRP 274
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
C EP +L + G+++ +L+H + F D+ + N L+ YA+CG +
Sbjct: 67 CGSLEPDRTLYNTLLKRCTQLGKLKEGKLVHFHVLNSNFK-HDLVIQNSLLFMYARCGSL 125
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
A +LF++ + +++VSWT++I+G+A + +A+ F RM G +PN
Sbjct: 126 EGARRLFDE--MPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPN 174
>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 640
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 167/327 (51%), Gaps = 50/327 (15%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT+ +++ C G Q+H + K GF +V + L MYV G +KD+ LF
Sbjct: 120 NRFTFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLF 179
Query: 83 -DELPERNLVT-------------WNVIITG---------------------LVKWTGII 107
+ ER +V WNV+I G +V W +I
Sbjct: 180 YKNIIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMI 239
Query: 108 DGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF 167
GYS+ +A+ +FR M E P+ +T+++VLPA+ + G + + +H Y E G
Sbjct: 240 SGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGI 299
Query: 168 NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVEN 227
D+ + + LID Y+KCG I A +FE + R+N+++W+ +I+GFA+HG +A++
Sbjct: 300 RIDDV-LGSALIDMYSKCGIIEKAIMVFE--RLPRENVITWSAMINGFAIHGQAGDAIDC 356
Query: 228 FERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILE 276
F +M++ G++P+ I EEG ++F +MV + P I+HYGC++D+L
Sbjct: 357 FCKMRQAGVRPSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLG 416
Query: 277 RAGRLEQAEEVASGIPSQITNVVVWRT 303
R G L++AEE +P + + V+W+
Sbjct: 417 RLGLLDEAEEFILNMPIKPDD-VIWKA 442
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 92/347 (26%), Positives = 150/347 (43%), Gaps = 82/347 (23%)
Query: 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG------FQSHVYVNTALGDM 68
+SP LF I TC T+ +L +Q+HAVF K G + + A D+
Sbjct: 13 NSPASSLFPQ------INTCRTIR--DL-SQIHAVFIKSGQIRDTLAAAEILRFCATSDL 63
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
+ L + K+F+++P+RN +WN II G + S +++ A+ LF M +
Sbjct: 64 HHR--DLDYAHKIFNQMPQRNCFSWNTIIRGFSE--------SDEDKALIAITLFCEMMS 113
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
E+ EP+ T +VL A K G+++ + IHG K GF + +SN L+ Y CG +
Sbjct: 114 DEFIEPNRFTFPSVLKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSN-LVRMYVICGLM 172
Query: 189 FSASKLFEDTSVDR-------------------------------------------KNL 205
A LF ++R +++
Sbjct: 173 KDACVLFYKNIIEREMVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSV 232
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQK-VGLKPN---------RSWRIGEEGL-KFFDK 254
VSW T+ISG++ +G K+AVE F M+K ++PN R+G L ++
Sbjct: 233 VSWNTMISGYSQNGFFKDAVEVFREMKKGEDIRPNYVTLVSVLPAVSRLGSLELGEWLHL 292
Query: 255 MVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
E+ + D LID+ + G +E+A V +P + NV+ W
Sbjct: 293 YAEDSGIRIDDVLGSALIDMYSKCGIIEKAIMVFERLPRE--NVITW 337
>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 810
Score = 148 bits (373), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 158/302 (52%), Gaps = 28/302 (9%)
Query: 5 KQLQQIYIH-SHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNT 63
++ +YI ++S L P D FT L+ L G ++H + G + ++
Sbjct: 319 RKALNLYIQMTYSGLVP--DWFTIGSLLLASAHLKSLRYGKEVHGFVLRHGLEIDSFIGI 376
Query: 64 ALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALF 123
+L +Y+ G + LFD + E++ V+WN +I+G YS+ +AL LF
Sbjct: 377 SLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISG----------YSQNGLPEDALILF 426
Query: 124 RRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183
R++ + + +PS+I +++VL A + +R + H Y K D+ V+ ID YA
Sbjct: 427 RKLVSDGF-QPSDIAVVSVLGACSQQSALRLGKETHCYALK-ALLMEDVFVACSTIDMYA 484
Query: 184 KCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWR 243
K GCI + +F+ + K+L SW II+ + +HG G+E++E FERM+KVG P+
Sbjct: 485 KSGCIKESRSVFD--GLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTF 542
Query: 244 IG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
IG EEGLK+F++M + P ++HY C++D+L RAGRL+ A + +P
Sbjct: 543 IGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMP 602
Query: 293 SQ 294
Q
Sbjct: 603 EQ 604
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 114/219 (52%), Gaps = 13/219 (5%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D T ++ C +G ++H + K+G V VN +L DMY G+L ++
Sbjct: 131 LPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQM 190
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
LFD+ +N V+WN +I GL I EA LFR M E E +E+T+L
Sbjct: 191 LFDKNNRKNAVSWNTMIGGLCTKGYIF----------EAFNLFREMQMQEDIEVNEVTVL 240
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+LPA + ++R+ + +HGY + GF +D V+N + YAKCG + A ++F S+
Sbjct: 241 NILPACLEISQLRSLKELHGYSIRHGFQ-YDELVANGFVAAYAKCGMLICAERVF--YSM 297
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+ K + SW +I G A +G ++A+ + +M GL P+
Sbjct: 298 ETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPD 336
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 107/210 (50%), Gaps = 12/210 (5%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FT+ +I+ C LG +H + K+G V+V AL MY GF+ + K+F
Sbjct: 30 DNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVF 89
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+P RNLV+WN II+G + +G+S+ + L MA E P T++ V
Sbjct: 90 HYMPVRNLVSWNSIISGFSE-----NGFSK----DCFDMLVEMMAGEEGLLPDIATLVTV 140
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LP + +V+ IHG K G + D+ V+N L+D Y+KCG + A LF+ +R
Sbjct: 141 LPVCAREVDVQMGIRIHGLAVKLGLSE-DVRVNNSLVDMYSKCGYLTEAQMLFDKN--NR 197
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQ 232
KN VSW T+I G G EA F MQ
Sbjct: 198 KNAVSWNTMIGGLCTKGYIFEAFNLFREMQ 227
>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g30700; AltName: Full=Protein DYW9
gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 792
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 135/250 (54%), Gaps = 25/250 (10%)
Query: 46 LHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTG 105
+H K F SH V+TAL +Y L ++ + KLFDE PE++L +WN +I+
Sbjct: 341 IHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMIS------- 393
Query: 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
GY++ + +A++LFR M E++ P+ +TI +L A + G + + +H
Sbjct: 394 ---GYTQNGLTEDAISLFREMQKSEFS-PNPVTITCILSACAQLGALSLGKWVHDLVRST 449
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225
F + I+VS LI YAKCG I A +LF+ + +KN V+W T+ISG+ +HG G+EA+
Sbjct: 450 DFES-SIYVSTALIGMYAKCGSIAEARRLFD--LMTKKNEVTWNTMISGYGLHGQGQEAL 506
Query: 226 ENFERMQKVGLKPN-----------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDI 274
F M G+ P + +EG + F+ M+ P +KHY C++DI
Sbjct: 507 NIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDI 566
Query: 275 LERAGRLEQA 284
L RAG L++A
Sbjct: 567 LGRAGHLQRA 576
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 105/218 (48%), Gaps = 17/218 (7%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D+ T ++ L LG Q+H++ +K G SH YV T +Y G +K S L
Sbjct: 219 LDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSAL 278
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F E + ++V +N +I GY+ + +L+LF+ + S T+++
Sbjct: 279 FREFRKPDIVAYN----------AMIHGYTSNGETELSLSLFKELMLSGARLRSS-TLVS 327
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
++P +G + IHGY K F + VS L Y+K I SA KLF+++
Sbjct: 328 LVPV---SGHLMLIYAIHGYCLKSNFLSH-ASVSTALTTVYSKLNEIESARKLFDESP-- 381
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
K+L SW +ISG+ +G+ ++A+ F MQK PN
Sbjct: 382 EKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPN 419
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 95/208 (45%), Gaps = 27/208 (12%)
Query: 16 SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL 75
SP P T + ++ C L +LG +H + F+S +YV+TAL MY G +
Sbjct: 417 SPNP-----VTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSI 471
Query: 76 KDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS 135
++ +LFD + ++N VTWN +I+ GY + EAL +F M T P+
Sbjct: 472 AEARRLFDLMTKKNEVTWNTMIS----------GYGLHGQGQEALNIFYEMLNSGIT-PT 520
Query: 136 EITILAVLPAIWKNGEVRNCQ-----LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190
+T L VL A G V+ +IH YG + + C++D + G +
Sbjct: 521 PVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHY-----ACMVDILGRAGHLQR 575
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMH 218
A + E S++ + V W T++ +H
Sbjct: 576 ALQFIEAMSIEPGSSV-WETLLGACRIH 602
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 104/227 (45%), Gaps = 15/227 (6%)
Query: 11 YIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV 70
++ + L P +S TY+F I G +H G S + + + + MY
Sbjct: 108 HLRKSTDLKP--NSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYF 165
Query: 71 SLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE 130
++D+ K+FD +PE++ + WN +I+ GY + E++ +FR +
Sbjct: 166 KFWRVEDARKVFDRMPEKDTILWNTMIS----------GYRKNEMYVESIQVFRDLINES 215
Query: 131 YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190
T T+L +LPA+ + E+R IH K G + D +V I Y+KCG I
Sbjct: 216 CTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHD-YVLTGFISLYSKCGKIKM 274
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
S LF + + ++V++ +I G+ +G + ++ F+ + G +
Sbjct: 275 GSALFRE--FRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAR 319
Score = 37.7 bits (86), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 84/187 (44%), Gaps = 13/187 (6%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
Q HA GF++ + + T L LG + + +F + ++ +NV++
Sbjct: 38 QTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMR------ 91
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
G+S + +L++F + +P+ T + A + R ++IHG
Sbjct: 92 ----GFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVV 147
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
G ++ ++ + + ++ Y K + A K+F+ + K+ + W T+ISG+ + M E+
Sbjct: 148 DGCDS-ELLLGSNIVKMYFKFWRVEDARKVFD--RMPEKDTILWNTMISGYRKNEMYVES 204
Query: 225 VENFERM 231
++ F +
Sbjct: 205 IQVFRDL 211
>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 558
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 88/293 (30%), Positives = 157/293 (53%), Gaps = 28/293 (9%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D+FT+ F+++ C L + LH++ K G S ++V AL +Y G L+ + K+
Sbjct: 85 LDNFTFPFVLKACSRL---QINLHLHSLIVKYGLDSDIFVQNALICVYGYCGSLEMAVKV 141
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FDE+ ER+ V+W+ +I + +GY ++EAL LF +M + P E+T+L+
Sbjct: 142 FDEMSERDSVSWSTVIASFLN-----NGY-----ASEALDLFEKMQLEDKVVPDEVTMLS 191
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
V+ AI G++ + + + + G + + LID +++CG I + +FE +V
Sbjct: 192 VISAISHLGDLELGRWVRAFIGRLGL-GVSVALGTALIDMFSRCGSIDESIVVFEKMAV- 249
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
+N+++WT +I+G +HG EA+ F M+K G++P+ G +EG
Sbjct: 250 -RNVLTWTALINGLGVHGRSTEALAMFHSMRKSGVQPDYVTFSGVLVACSHGGLVKEGWD 308
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ + + + P + HYGC++DIL RAG L +A + +P + N ++WRT
Sbjct: 309 IFESIRKVYRMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMK-PNSIIWRT 360
>gi|356551789|ref|XP_003544256.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Glycine max]
Length = 758
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 85/274 (31%), Positives = 151/274 (55%), Gaps = 16/274 (5%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT + + C + LGTQ++++ K G++S++ V +L +Y+ G + ++ +LF
Sbjct: 268 NEFTLTSALSQCCEILSLELGTQVYSLCIKFGYESNLRVRNSLLYLYLKSGCIVEAHRLF 327
Query: 83 DELPERNLVTWNVIITGLVKWTGII-DGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
+ + + ++VTWN +I G + + D S +R +EAL LF ++ +P T+ +
Sbjct: 328 NRMDDASMVTWNAMIAGHAQMMELTKDNLSACHRGSEALKLFSKLNL-SGMKPDLFTLSS 386
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL + + + IH K GF + D+ VS LI Y+KCG I ASK F + S
Sbjct: 387 VLSVCSRMLAIEQGEQIHAQTIKTGFLS-DVIVSTSLISMYSKCGSIERASKAFLEMST- 444
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
+ +++WT++I+GF+ HGM ++A+ FE M G++PN +G + L
Sbjct: 445 -RTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNAVTFVGVLSACSHAGMVSQALN 503
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
+F+ M ++ ++ P + HY C++D+ R GRLEQA
Sbjct: 504 YFEIMQKKYKIKPAMDHYECMVDMFVRLGRLEQA 537
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 124/289 (42%), Gaps = 39/289 (13%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
+T S ++ C +L LG Q HA K V +AL +Y G L+D+ K F
Sbjct: 169 YTLSAVLHACSSLQSLKLGDQFHAYIIKYHVDFDASVGSALCSLYSKCGRLEDALKTFSR 228
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ E+N+++W ++ + G L LF M A + +P+E T+ + L
Sbjct: 229 IREKNVISWTSAVSACADNGAPVKG----------LRLFVEMIAVD-IKPNEFTLTSALS 277
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
+ + ++ K G+ + ++ V N L+ Y K GCI A +LF +D +
Sbjct: 278 QCCEILSLELGTQVYSLCIKFGYES-NLRVRNSLLYLYLKSGCIVEAHRLF--NRMDDAS 334
Query: 205 LVSWTTIISGFA-MHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLP 263
+V+W +I+G A M + K+ + R G E LK F K+ + P
Sbjct: 335 MVTWNAMIAGHAQMMELTKDNLSACHR--------------GSEALKLFSKL-NLSGMKP 379
Query: 264 DIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINS 312
D+ ++ + R +EQ E++ + +TGFL +I S
Sbjct: 380 DLFTLSSVLSVCSRMLAIEQGEQI---------HAQTIKTGFLSDVIVS 419
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 105/216 (48%), Gaps = 20/216 (9%)
Query: 27 YSFLIRTCV-TLSYPNLGTQL-HAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
Y L++ C+ T SY TQ+ H K G + +V + L ++Y G ++D+ ++FD
Sbjct: 70 YVPLLQQCLDTRSYSE--TQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFDN 127
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA-ACEYTEPSEITILAVL 143
+ RN+V W ++ G V+ + + A+ +F+ M A Y PS T+ AVL
Sbjct: 128 MLRRNVVAWTTLMVGFVQNS----------QPKHAIHVFQEMLYAGSY--PSVYTLSAVL 175
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
A ++ H Y K + FD V + L Y+KCG + A K F + + K
Sbjct: 176 HACSSLQSLKLGDQFHAYIIKYHVD-FDASVGSALCSLYSKCGRLEDALKTF--SRIREK 232
Query: 204 NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
N++SWT+ +S A +G + + F M V +KPN
Sbjct: 233 NVISWTSAVSACADNGAPVKGLRLFVEMIAVDIKPN 268
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 30/224 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT S ++ C + G Q+HA K GF S V V+T+L MY G ++ +SK F
Sbjct: 380 DLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYSKCGSIERASKAF 439
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E+ R ++ WT +I G+S+ S +AL +F M+ P+ +T + V
Sbjct: 440 LEMSTRTMIA----------WTSMITGFSQHGMSQQALHIFEDMSLAG-VRPNAVTFVGV 488
Query: 143 LPAIWKNGEVRNCQ-----LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
L A G V + Y K + ++ C++D + + G + A +
Sbjct: 489 LSACSHAGMVSQALNYFEIMQKKYKIKPAMDHYE-----CMVDMFVRLGRLEQALNFIKK 543
Query: 198 TSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKP 238
+ + + W+ I+G HG +G A E Q + LKP
Sbjct: 544 MNYEPSEFI-WSNFIAGCKSHGNLELGFYAAE-----QLLSLKP 581
>gi|255564603|ref|XP_002523296.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537384|gb|EEF39012.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 353
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 83/244 (34%), Positives = 125/244 (51%), Gaps = 22/244 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T++FL C + P LH F K GF+S V TAL DMY LG + + ++F
Sbjct: 81 NQHTFTFLFAACASFFSPLHAQMLHTHFKKSGFESDVIALTALVDMYCKLGMVAFAHRVF 140
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
DE+P R++ TWN +I G +V WT +I GYS+ R +AL
Sbjct: 141 DEIPVRDIPTWNALIAGYSRCGDMEGALKIFKLMPDRNVVSWTAMISGYSQNGRYAKALE 200
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF +M P+E+TI ++LPA G + I Y + G +++VSN L++
Sbjct: 201 LFLKMEKENGLRPNEVTIASILPACANLGALEVGDRIETYARENGL-LRNLYVSNALLEM 259
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YA+CG I A K+F+ R+NL SW ++I G A+HG +A+ + RM G+ P+
Sbjct: 260 YARCGKIDMARKVFDKIIGKRRNLCSWNSMIMGLAIHGRSHDALHLYNRMLIEGIAPDDV 319
Query: 242 WRIG 245
+G
Sbjct: 320 TFVG 323
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/313 (20%), Positives = 131/313 (41%), Gaps = 68/313 (21%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
Q+HA + G N L + + + + + KL D +P N+ +N
Sbjct: 6 QIHAYTLRNGID----YNKTLTERLIQIPNVPYAHKLIDLIPSPNVFLYN---------- 51
Query: 105 GIIDGYSRMNRSNEALALFRRMAA--CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
+I YS N+ ++ +++ +M + C + + + A + + + Q++H +
Sbjct: 52 KLIQAYSFQNQLHQCFSIYSQMRSRNCTGNQHTFTFLFAACASFF---SPLHAQMLHTHF 108
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV---------------------- 200
+K GF + D+ L+D Y K G + A ++F++ V
Sbjct: 109 KKSGFES-DVIALTALVDMYCKLGMVAFAHRVFDEIPVRDIPTWNALIAGYSRCGDMEGA 167
Query: 201 -------DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNR------------ 240
+N+VSWT +ISG++ +G +A+E F +M+K GL+PN
Sbjct: 168 LKIFKLMPDRNVVSWTAMISGYSQNGRYAKALELFLKMEKENGLRPNEVTIASILPACAN 227
Query: 241 --SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNV 298
+ +G+ + E +L ++ L+++ R G+++ A +V I + N+
Sbjct: 228 LGALEVGDR----IETYARENGLLRNLYVSNALLEMYARCGKIDMARKVFDKIIGKRRNL 283
Query: 299 VVWRTGFLRLLIN 311
W + + L I+
Sbjct: 284 CSWNSMIMGLAIH 296
>gi|296089760|emb|CBI39579.3| unnamed protein product [Vitis vinifera]
Length = 459
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 154/290 (53%), Gaps = 20/290 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT++ L+++C + +G +H V VGF+ + + D+Y S G ++D+ K+F
Sbjct: 106 DEFTFAPLLKSCSGICDNRIGKGVHGVVIVVGFERFSSIRIGIIDLYTSCGRMEDAKKVF 165
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ +R++ +V V W +I G + R EAL LFR M + EP + T++ +
Sbjct: 166 DEMLDRDMRDRSV-----VSWNSMIAGLEQSGRDGEALELFREMWDHGF-EPDDATVVTI 219
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LP + G V + IH Y E I V N L+D Y KCG + +A ++F + + +
Sbjct: 220 LPVCARLGAVDVGEWIHSYAESSRLLRDFISVGNSLVDFYCKCGILETAWRVFNE--MPQ 277
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN+VSW +ISG +G G+ + FE M G++PN + +G E G
Sbjct: 278 KNVVSWNAMISGLTFNGKGELGADLFEEMINKGVRPNDATFVGVLSCCAHAGLVERGRNL 337
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F M + ++ P ++H+GC++D+L R G +E+A ++ +P + N V+W
Sbjct: 338 FTSMTVDHKMEPKLEHFGCMVDLLARNGCMEEARDLVRTMPMR-PNAVLW 386
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 118/272 (43%), Gaps = 25/272 (9%)
Query: 44 TQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKW 103
TQL + + + + H++ + + ++S+ D++ NLV L+ +
Sbjct: 23 TQLPQIHAHI-LRHHLHQSNQILSHFISV------CGALDKMGYANLVFHQTQNPNLLLF 75
Query: 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGE 163
+I GYS S +L LF +M P E T +L + + R + +HG
Sbjct: 76 NSMIKGYSLCGPSENSLLLFSQMKN-RGIWPDEFTFAPLLKSCSGICDNRIGKGVHGVVI 134
Query: 164 KRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE---DTSVDRKNLVSWTTIISGFAMHGM 220
GF F + +ID Y CG + A K+F+ D + +++VSW ++I+G G
Sbjct: 135 VVGFERFS-SIRIGIIDLYTSCGRMEDAKKVFDEMLDRDMRDRSVVSWNSMIAGLEQSGR 193
Query: 221 GKEAVENFERMQKVGLKPNRS---------WRIGEEGL-KFFDKMVEECEVLPDIKHYG- 269
EA+E F M G +P+ + R+G + ++ E +L D G
Sbjct: 194 DGEALELFREMWDHGFEPDDATVVTILPVCARLGAVDVGEWIHSYAESSRLLRDFISVGN 253
Query: 270 CLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
L+D + G LE A V + +P + NVV W
Sbjct: 254 SLVDFYCKCGILETAWRVFNEMPQK--NVVSW 283
>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g57430, chloroplastic; Flags: Precursor
gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 890
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 146/294 (49%), Gaps = 14/294 (4%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L +S T + ++ CV + +H K G +V L DMY LG + + +
Sbjct: 402 LANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMR 461
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F ++ +R+LVTWN +ITG V D +++ + A+ +P+ IT++
Sbjct: 462 IFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLM 521
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+LP+ + + IH Y K A D+ V + L+D YAKCGC+ + K+F+ +
Sbjct: 522 TILPSCAALSALAKGKEIHAYAIKNNL-ATDVAVGSALVDMYAKCGCLQMSRKVFD--QI 578
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
+KN+++W II + MHG G+EA++ M G+KPN I +EGL
Sbjct: 579 PQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGL 638
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ F M + V P HY C++D+L RAGR+++A ++ + +P W +
Sbjct: 639 RIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSS 692
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 137/302 (45%), Gaps = 39/302 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVSLGFLKDSSKL 81
D FT S ++ C L G +LHA K G + +V +AL DMY + + ++
Sbjct: 301 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRV 360
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + +R + WN +I G YS+ EAL LF M + T+
Sbjct: 361 FDGMFDRKIGLWNAMIAG----------YSQNEHDKEALLLFIGMEESAGLLANSTTMAG 410
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
V+PA ++G + IHG+ KRG + D V N L+D Y++ G I A ++F ++
Sbjct: 411 VVPACVRSGAFSRKEAIHGFVVKRGLDR-DRFVQNTLMDMYSRLGKIDIAMRIF--GKME 467
Query: 202 RKNLVSWTTIISGFAMHGMGKEA------VENFER-----MQKVGLKPNR---------- 240
++LV+W T+I+G+ ++A ++N ER +V LKPN
Sbjct: 468 DRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSC 527
Query: 241 -SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVV 299
+ +G + ++ + D+ L+D+ + G L+ + +V IP + NV+
Sbjct: 528 AALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK--NVI 584
Query: 300 VW 301
W
Sbjct: 585 TW 586
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 105/226 (46%), Gaps = 18/226 (7%)
Query: 24 SFTYSFLIRTCVTLSYPN---LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
SFT ++ C L P +G Q+HA + G + +NT + MY LG L S
Sbjct: 199 SFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVA-MYGKLGKLASSKV 257
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
L R+LVTWN +++ L + ++ EAL R M E EP E TI
Sbjct: 258 LLGSFGGRDLVTWNTVLSSLCQNEQLL----------EALEYLREMV-LEGVEPDEFTIS 306
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+VLPA +R + +H Y K G + V + L+D Y C + S ++F D
Sbjct: 307 SVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVF-DGMF 365
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQK-VGLKPNRSWRIG 245
DRK + W +I+G++ + KEA+ F M++ GL N + G
Sbjct: 366 DRK-IGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAG 410
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 118/276 (42%), Gaps = 45/276 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S T ++ +C LS G ++HA K + V V +AL DMY G L+ S K+F
Sbjct: 516 NSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVF 575
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++P++N++TWNVII Y EA+ L R M + +P+E+T ++V
Sbjct: 576 DQIPQKNVITWNVIIM----------AYGMHGNGQEAIDLLRMMMV-QGVKPNEVTFISV 624
Query: 143 LPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
A +G V ++ + G H + C++D + G I A +L D
Sbjct: 625 FAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYA-CVVDLLGRAGRIKEAYQLMNMMPRD 683
Query: 202 RKNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEE 258
+W++++ +H +G+ A +N + L+PN +
Sbjct: 684 FNKAGAWSSLLGASRIHNNLEIGEIAAQNL-----IQLEPNVA----------------- 721
Query: 259 CEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
HY L +I AG ++A EV + Q
Sbjct: 722 -------SHYVLLANIYSSAGLWDKATEVRRNMKEQ 750
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 104/226 (46%), Gaps = 29/226 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQ-SHVYVNTALGDMYVSLGFLKDSSKL 81
D++ + L++ L LG Q+HA K G+ V V L ++Y G K+
Sbjct: 96 DNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKV 155
Query: 82 FDELPERNLVTWNVIITGLV---KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
FD + ERN V+WN +I+ L KW AL FR M E EPS T
Sbjct: 156 FDRISERNQVSWNSLISSLCSFEKW-------------EMALEAFRCMLD-ENVEPSSFT 201
Query: 139 ILAVLPAI----WKNGEVRNCQLIHGYGEKRG-FNAFDIHVSNCLIDTYAKCGCIFSASK 193
+++V+ A G + Q +H YG ++G N+F I N L+ Y K G + S+
Sbjct: 202 LVSVVTACSNLPMPEGLMMGKQ-VHAYGLRKGELNSFII---NTLVAMYGKLGKLASSKV 257
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
L S ++LV+W T++S + EA+E M G++P+
Sbjct: 258 LL--GSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 301
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 3/137 (2%)
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
W ++ R N EA+ + M +P A+L A+ ++ + IH +
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLG-IKPDNYAFPALLKAVADLQDMELGKQIHAHV 123
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
K G+ + V+N L++ Y KCG + K+F+ S +N VSW ++IS +
Sbjct: 124 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRIS--ERNQVSWNSLISSLCSFEKWE 181
Query: 223 EAVENFERMQKVGLKPN 239
A+E F M ++P+
Sbjct: 182 MALEAFRCMLDENVEPS 198
>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
Length = 890
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 95/297 (31%), Positives = 154/297 (51%), Gaps = 38/297 (12%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKV----------GFQSHVYVNTALGDMYVSLGFLKDSS 79
++ C +L + GT++HA K G + V AL DMY K +
Sbjct: 407 VLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAAR 466
Query: 80 KLFDELP--ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY-TEPSE 136
+FD++P ERN+VTW V+I G+++ SN+AL LF M + Y P+
Sbjct: 467 SIFDDIPLEERNVVTWTVMI----------GGHAQYGDSNDALKLFVEMISEPYGVAPNA 516
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRG-FNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
TI +L A +R + IH Y + + + V+NCLID Y+KCG + +A +F
Sbjct: 517 YTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVF 576
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRI 244
+ S+ +K+ +SWT++++G+ MHG G EA++ F++M+K G P+ +
Sbjct: 577 D--SMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGM 634
Query: 245 GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
++GL +FD M + + P +HY C ID+L R+GRL++A +P + T VVW
Sbjct: 635 VDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPT-AVVW 690
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 113/216 (52%), Gaps = 15/216 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT +++ C L G+ H + GF+S+V++ AL MY G L+++S +F
Sbjct: 154 DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 213
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE-----I 137
DE+ +R I ++ W I+ + + + + AL LF +M + +P+ I
Sbjct: 214 DEITQRG-------IDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDII 266
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
+I+ +LPA V + +HG + G D+ V N LID YAKCG + +A K+F
Sbjct: 267 SIVNILPACGSLKAVPQTKEVHGNAIRNG-TFPDVFVGNALIDAYAKCGLMENAVKVF-- 323
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
++ K++VSW +++G++ G + A E F+ M+K
Sbjct: 324 NMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRK 359
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 70/246 (28%), Positives = 117/246 (47%), Gaps = 37/246 (15%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
++ C +L ++H + G V+V AL D Y G ++++ K+F+ + ++
Sbjct: 271 ILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKD 330
Query: 90 LVTWNVIITG-------------------------LVKWTGIIDGYSRMNRSNEALALFR 124
+V+WN ++ G +V WT +I GYS+ S+EAL LFR
Sbjct: 331 VVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFR 390
Query: 125 RMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR---------GFNAFDIHVS 175
+M + P+ +TI++VL A G IH Y K G D+ V
Sbjct: 391 QMIF-SGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVY 449
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM--QK 233
N LID Y+KC +A +F+D ++ +N+V+WT +I G A +G +A++ F M +
Sbjct: 450 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 509
Query: 234 VGLKPN 239
G+ PN
Sbjct: 510 YGVAPN 515
>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
Length = 890
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 146/294 (49%), Gaps = 14/294 (4%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L +S T + ++ CV + +H K G +V L DMY LG + + +
Sbjct: 402 LANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMR 461
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F ++ +R+LVTWN +ITG V D +++ + A+ +P+ IT++
Sbjct: 462 IFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLM 521
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+LP+ + + IH Y K A D+ V + L+D YAKCGC+ + K+F+ +
Sbjct: 522 TILPSCAALSALAKGKEIHAYAIKNNL-ATDVAVGSALVDMYAKCGCLQMSRKVFD--QI 578
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
+KN+++W II + MHG G+EA++ M G+KPN I +EGL
Sbjct: 579 PQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGL 638
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ F M + V P HY C++D+L RAGR+++A ++ + +P W +
Sbjct: 639 RIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSS 692
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 137/302 (45%), Gaps = 39/302 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVSLGFLKDSSKL 81
D FT S ++ C L G +LHA K G + +V +AL DMY + + ++
Sbjct: 301 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRV 360
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + +R + WN +I G YS+ EAL LF M + T+
Sbjct: 361 FDGMFDRKIGLWNAMIAG----------YSQNEHDKEALLLFIGMEESAGLLANSTTMAG 410
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
V+PA ++G + IHG+ KRG + D V N L+D Y++ G I A ++F ++
Sbjct: 411 VVPACVRSGAFSRKEAIHGFVVKRGLDR-DRFVQNTLMDMYSRLGKIDIAMRIF--GKME 467
Query: 202 RKNLVSWTTIISGFAMHGMGKEA------VENFER-----MQKVGLKPNR---------- 240
++LV+W T+I+G+ ++A ++N ER +V LKPN
Sbjct: 468 DRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSC 527
Query: 241 -SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVV 299
+ +G + ++ + D+ L+D+ + G L+ + +V IP + NV+
Sbjct: 528 AALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK--NVI 584
Query: 300 VW 301
W
Sbjct: 585 TW 586
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 105/226 (46%), Gaps = 18/226 (7%)
Query: 24 SFTYSFLIRTCVTLSYPN---LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
SFT ++ C L P +G Q+HA + G + +NT + MY LG L S
Sbjct: 199 SFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVA-MYGKLGKLASSKV 257
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
L R+LVTWN +++ L + ++ EAL R M E EP E TI
Sbjct: 258 LLGSFGGRDLVTWNTVLSSLCQNEQLL----------EALEYLREMV-LEGVEPDEFTIS 306
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+VLPA +R + +H Y K G + V + L+D Y C + S ++F D
Sbjct: 307 SVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVF-DGMF 365
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQK-VGLKPNRSWRIG 245
DRK + W +I+G++ + KEA+ F M++ GL N + G
Sbjct: 366 DRK-IGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAG 410
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 118/276 (42%), Gaps = 45/276 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S T ++ +C LS G ++HA K + V V +AL DMY G L+ S K+F
Sbjct: 516 NSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVF 575
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++P++N++TWNVII Y EA+ L R M + +P+E+T ++V
Sbjct: 576 DQIPQKNVITWNVIIM----------AYGMHGNGQEAIDLLRMMMV-QGVKPNEVTFISV 624
Query: 143 LPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
A +G V ++ + G H + C++D + G I A +L D
Sbjct: 625 FAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYA-CVVDLLGRAGRIKEAYQLMNMMPRD 683
Query: 202 RKNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEE 258
+W++++ +H +G+ A +N + L+PN +
Sbjct: 684 FNKAGAWSSLLGASRIHNNLEIGEIAAQNL-----IQLEPNVA----------------- 721
Query: 259 CEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
HY L +I AG ++A EV + Q
Sbjct: 722 -------SHYVLLANIYSSAGLWDKATEVRRNMKEQ 750
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 104/226 (46%), Gaps = 29/226 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQ-SHVYVNTALGDMYVSLGFLKDSSKL 81
D++ + L++ L LG Q+HA K G+ V V L ++Y G K+
Sbjct: 96 DNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKV 155
Query: 82 FDELPERNLVTWNVIITGLV---KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
FD + ERN V+WN +I+ L KW AL FR M E EPS T
Sbjct: 156 FDRISERNQVSWNSLISSLCSFEKW-------------EMALEAFRCMLD-ENVEPSSFT 201
Query: 139 ILAVLPAI----WKNGEVRNCQLIHGYGEKRG-FNAFDIHVSNCLIDTYAKCGCIFSASK 193
+++V+ A G + Q +H YG ++G N+F I N L+ Y K G + S+
Sbjct: 202 LVSVVTACSNLPMPEGLMMGKQ-VHAYGLRKGELNSFII---NTLVAMYGKLGKLASSKV 257
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
L S ++LV+W T++S + EA+E M G++P+
Sbjct: 258 LL--GSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 301
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 3/137 (2%)
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
W ++ R N EA+ + M +P A+L A+ ++ + IH +
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLG-IKPDNYAFPALLKAVADLQDMELGKQIHAHV 123
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
K G+ + V+N L++ Y KCG + K+F+ S +N VSW ++IS +
Sbjct: 124 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRIS--ERNQVSWNSLISSLCSFEKWE 181
Query: 223 EAVENFERMQKVGLKPN 239
A+E F M ++P+
Sbjct: 182 MALEAFRCMLDENVEPS 198
>gi|242081563|ref|XP_002445550.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
gi|241941900|gb|EES15045.1| hypothetical protein SORBIDRAFT_07g021340 [Sorghum bicolor]
Length = 595
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 151/293 (51%), Gaps = 28/293 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++FT + L++ L++ QLHA G + T+L Y + G + KLF
Sbjct: 121 NAFTLAILLKPRCALAH---ARQLHANVVAEGHLRDALLATSLMACYANRGDGDGARKLF 177
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY-TEPSEITILA 141
E+P R+ V WNV+I+ +R R+ +AL LF M + EP ++T +
Sbjct: 178 GEMPARDAVAWNVLISCC----------ARNRRTKDALKLFEEMRGRDSGAEPDDVTCIL 227
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+L A G + + + Y E+ G+ A + V N LI Y++CGC+ A ++F T
Sbjct: 228 LLQACTSLGALDFGEQVWAYAEEHGYGA-KLKVRNSLIAMYSRCGCVDKAYRVFCGTP-- 284
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
+K++V+W+ +ISG A +G G +A+ FE M + + P+ G +EG +
Sbjct: 285 QKSVVTWSAMISGLAANGFGDDAISAFEEMIRSDVAPDEQTFTGVLSACSHSGLVDEGFR 344
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
FFD M E + P+++HYGC++D++ RAG L++A E+ + + +WRT
Sbjct: 345 FFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEAYELVTNEMKVAPDATIWRT 397
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 92/220 (41%), Gaps = 36/220 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T L++ C +L + G Q+ A + G+ + + V +L MY G + + ++F
Sbjct: 221 DDVTCILLLQACTSLGALDFGEQVWAYAEEHGYGAKLKVRNSLIAMYSRCGCVDKAYRVF 280
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
P++++VTW+ +I+GL +G+ ++A++ F M + P E T V
Sbjct: 281 CGTPQKSVVTWSAMISGLAA-----NGFG-----DDAISAFEEMIRSDVA-PDEQTFTGV 329
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFD-----------IHVSNCLIDTYAKCGCIFSA 191
L A +G V GF FD + C++D + G + A
Sbjct: 330 LSACSHSGLV-----------DEGFRFFDMMRCEYGLKPNVRHYGCIVDLMGRAGLLDEA 378
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENF 228
+L + + W T++ +HG +G+ + N
Sbjct: 379 YELVTNEMKVAPDATIWRTLLGACRIHGHVDLGERVISNL 418
>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
Length = 546
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 166/348 (47%), Gaps = 74/348 (21%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTAL-------GDM------- 68
D FT+SFL++ C L + G +H K GF+ + +V L GD+
Sbjct: 112 DKFTFSFLLKGCTRLEWRKTGFCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIF 171
Query: 69 -----------------YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK--------- 102
Y G L + ++FDE+P ++LV+WNV+ITG VK
Sbjct: 172 YDLPERSVVSWSALTAGYARRGELGVARQIFDEMPVKDLVSWNVMITGYVKNGEMENART 231
Query: 103 ------------WTGIIDGYSRMNRSNEALALF---RRMAACEYTEPSEITILAVLPAIW 147
W +I GY +AL +F R + C P E+T+L++L A
Sbjct: 232 LFDEAPEKDVVTWNTMIAGYVLRGEQRQALEMFEEMRNVGEC----PDEVTMLSLLSACA 287
Query: 148 KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
G+++ + +H + + + N L+D YAKCG I A ++F+ + K++ +
Sbjct: 288 DLGDLQVGRKLHCSISEMTRGDLSVLLGNALVDMYAKCGSIEIALQVFK--KMREKDVTT 345
Query: 208 WTTIISGFAMHGMGKEAVENFERMQKV-GLKPNRSWRIG-----------EEGLKFFDKM 255
W ++I G A HG +E+++ F MQ + +KPN +G EEG ++F M
Sbjct: 346 WNSVIGGLAFHGHAEESIKLFAEMQALKNIKPNEITFVGVIVACSHAGNVEEGRRYFKLM 405
Query: 256 VEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
E ++ P++ H+GC++D+L RAG L +A E+ + + + N ++WRT
Sbjct: 406 RERYDIEPNMIHHGCMVDLLGRAGLLSEAFELIAKMEIE-PNAIIWRT 452
>gi|42567862|ref|NP_197034.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635759|sp|Q9LXF2.2|PP385_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g15300
gi|332004762|gb|AED92145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 166/349 (47%), Gaps = 74/349 (21%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTAL-------GDMYVSLGFL 75
D +T++F+++ C L + + G H + GF + YV AL GD+ ++
Sbjct: 111 DRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELF 170
Query: 76 KDSSK------------------------LFDELPERNLVTWNVIITGLVK--------- 102
DS+K LFDE+P ++ V WNV+ITG +K
Sbjct: 171 DDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARE 230
Query: 103 ------------WTGIIDGYSRMNRSNEALALFRRMA-ACEYTEPSEITILAVLPAIWKN 149
W +I GY EAL +F+ M A E+ P +TIL++L A
Sbjct: 231 LFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEH--PDVVTILSLLSACAVL 288
Query: 150 GEVRNCQLIHGYGEKRGFNAFDIHVS----NCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
G++ + +H Y + + I+V N LID YAKCG I A ++F V ++L
Sbjct: 289 GDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFR--GVKDRDL 346
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDK 254
+W T+I G A+H + ++E FE MQ++ + PN IG +EG K+F
Sbjct: 347 STWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSL 405
Query: 255 MVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
M + + P+IKHYGC++D+L RAG+LE+A + + N +VWRT
Sbjct: 406 MRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIE-PNAIVWRT 453
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 22/192 (11%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSL-----GFLKDSSKLFDELPERNLVTWNVIITG 99
Q+HA G S++ V +G++ S G LK + KLFDE+P+ ++ N
Sbjct: 30 QIHASMVVNGLMSNLSV---VGELIYSASLSVPGALKYAHKLFDEIPKPDVSICN----- 81
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
++ G ++ + + ++L+ M P T VL A K N H
Sbjct: 82 -----HVLRGSAQSMKPEKTVSLYTEMEK-RGVSPDRYTFTFVLKACSKLEWRSNGFAFH 135
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
G + GF + +V N LI +A CG + AS+LF+D++ K V+W+++ SG+A G
Sbjct: 136 GKVVRHGF-VLNEYVKNALILFHANCGDLGIASELFDDSAKAHK--VAWSSMTSGYAKRG 192
Query: 220 MGKEAVENFERM 231
EA+ F+ M
Sbjct: 193 KIDEAMRLFDEM 204
>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 155/304 (50%), Gaps = 36/304 (11%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
+ D ++ C L G +H + KVG +++V + AL MY S + + K
Sbjct: 286 MVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQK 345
Query: 81 LFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEA 119
LF E + ++WN +I+G VK W+ +I GY++ +R E
Sbjct: 346 LFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTET 405
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
L LF+ M E T+P E +++V+ A + + IH Y K G +I + LI
Sbjct: 406 LVLFQEMQI-EGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLK-INIILGTTLI 463
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+ Y K GC+ A ++F+ ++ K + +W +I G AM+G+ ++++ F M++ G+ PN
Sbjct: 464 NMYMKLGCVEDALEVFK--GLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPN 521
Query: 240 -----------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
R + +EG + F+ M++E ++ P+IKHYGC++D+L RAG L++AEE+
Sbjct: 522 EITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELI 581
Query: 289 SGIP 292
+P
Sbjct: 582 ESMP 585
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 92/381 (24%), Positives = 148/381 (38%), Gaps = 97/381 (25%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++TY L ++C G + KVGF S VY+ L +MY G L D+ K+F
Sbjct: 125 DNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVF 184
Query: 83 -------------------------------DELPERNLVTWNVIIT------------- 98
D +PERN++ N +I
Sbjct: 185 DGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACK 244
Query: 99 --------GLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
LV W+ +I Y + EAL LF+ M A E+ +L+VL A +
Sbjct: 245 LFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNA-NGIMVDEVVVLSVLSACSRLL 303
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT------------ 198
V +L+HG K G + +++ N LI Y+ C + +A KLF ++
Sbjct: 304 VVITGKLVHGLVVKVGIETY-VNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMI 362
Query: 199 -----------------SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
S+ K+ VSW+ +ISG+A E + F+ MQ G KP+ +
Sbjct: 363 SGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEMQIEGTKPDET 422
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+ ++G K+ + + + +I LI++ + G +E A EV G
Sbjct: 423 ILVSVISACTHLAALDQG-KWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKG 481
Query: 291 IPSQITNVVVWRTGFLRLLIN 311
+ + V W L L +N
Sbjct: 482 LEEK--GVSTWNALILGLAMN 500
>gi|297836444|ref|XP_002886104.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331944|gb|EFH62363.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 723
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 150/284 (52%), Gaps = 28/284 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T L++ C +P +H V + G++S+ ++L D Y S + D+ +F
Sbjct: 335 DEVTLVSLLQVCKFFEHPLPCKSIHGVIIRRGYESNEVALSSLMDAYTSCSLVDDARTVF 394
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + +++V+ + +I+GL R RS+EA+++F +M +P+ IT++++
Sbjct: 395 DSMSYKDVVSCSTMISGL----------GRCGRSDEAISIFCQM----RDKPNAITVISL 440
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + +R + HG +RG DI V ++D YAKCG I A + F+ +
Sbjct: 441 LSACSVSAVLRTSKWAHGIAIRRGLAINDISVDTSIVDAYAKCGAIDIARRTFD--QITE 498
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
K++VSWT IIS +A++G+ +A+ +F+ M++ PN + ++GL
Sbjct: 499 KSIVSWTVIISAYAINGLPDKALASFDEMKRDSYTPNAVTYLAALSACNHGGLVKKGLMI 558
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQI 295
F MVEE + P ++HY C++D+L RAG ++ A E+ +P +
Sbjct: 559 FRSMVEE-DQKPSLQHYSCIVDMLSRAGEIDTAMELIKNLPEDV 601
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 112/214 (52%), Gaps = 15/214 (7%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T +I C +L + G ++H + GF V ++ +Y L + KLFDE+
Sbjct: 137 TLVLVIHACRSLWFD--GEKIHGYVIRSGFWRISSVQNSILCLYSEFDSLS-ARKLFDEM 193
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
ER++++W+V+I V+ + G L LF+ M TEP +T+ +VL A
Sbjct: 194 SERDVISWSVVIRSYVQSQEPVLG----------LELFKEMVREAKTEPDCVTVTSVLKA 243
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
++ + +HG+ +RGF+ D+ V N LID Y+K SA ++F++T+ +N+
Sbjct: 244 CAVLDDIDVGRSVHGFSIRRGFDLVDVFVRNSLIDMYSKGYDADSAFRVFDETTC--RNI 301
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
VSW +I++GF + EA+E F M+K L+ +
Sbjct: 302 VSWNSILAGFVYNQRYDEALEMFRLMKKEALEAD 335
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 117/219 (53%), Gaps = 20/219 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQ-SHVYVNTALGDMYVSLGFLKDSS-K 80
D T + +++ C L ++G +H + GF V+V +L DMY S G+ DS+ +
Sbjct: 233 DCVTVTSVLKACAVLDDIDVGRSVHGFSIRRGFDLVDVFVRNSLIDMY-SKGYDADSAFR 291
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FDE RN+V+WN I+ G V Y++ R +EAL +FR M E E E+T++
Sbjct: 292 VFDETTCRNIVSWNSILAGFV--------YNQ--RYDEALEMFRLMKK-EALEADEVTLV 340
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
++L C+ IHG +RG+ + ++ +S+ L+D Y C + A +F+ S+
Sbjct: 341 SLLQVCKFFEHPLPCKSIHGVIIRRGYESNEVALSS-LMDAYTSCSLVDDARTVFD--SM 397
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
K++VS +T+ISG G EA+ F +M+ KPN
Sbjct: 398 SYKDVVSCSTMISGLGRCGRSDEAISIFCQMRD---KPN 433
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 114/264 (43%), Gaps = 65/264 (24%)
Query: 4 YKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNT 63
Y ++Q I + P F + + + C LS+ GF+S+V V
Sbjct: 32 YSEIQSAGIQFNDP-------FVFPIVFKACAKLSWL-----------LQGFESYVSVGN 73
Query: 64 ALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALF 123
++ D Y+ G L + FD + R+ V+WNVI+ GL+ G+ E L F
Sbjct: 74 SIADFYMKCGDLCSGLRAFDCMNSRDSVSWNVIVFGLLD-----HGF-----EEEGLWWF 123
Query: 124 RRMAACEYTEPSEITILAVLPA---IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
++ + EP+ T++ V+ A +W +GE IHGY + GF V N ++
Sbjct: 124 SKLRVWGF-EPNVSTLVLVIHACRSLWFDGE-----KIHGYVIRSGFWRIS-SVQNSILC 176
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
Y++ + SA KLF++ S ++++SW+ +I + +E V
Sbjct: 177 LYSEFDSL-SARKLFDEMS--ERDVISWSVVIRSYV---QSQEPV--------------- 215
Query: 241 SWRIGEEGLKFFDKMVEECEVLPD 264
GL+ F +MV E + PD
Sbjct: 216 ------LGLELFKEMVREAKTEPD 233
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 27/140 (19%)
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
KW ++ GYS + + A ++ +P V P ++K + L
Sbjct: 24 KWREVVSGYSEI-----------QSAGIQFNDP------FVFPIVFKACAKLSWLL---- 62
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
+GF ++ + V N + D Y KCG + S + F+ ++ ++ VSW I+ G HG
Sbjct: 63 ---QGFESY-VSVGNSIADFYMKCGDLCSGLRAFD--CMNSRDSVSWNVIVFGLLDHGFE 116
Query: 222 KEAVENFERMQKVGLKPNRS 241
+E + F +++ G +PN S
Sbjct: 117 EEGLWWFSKLRVWGFEPNVS 136
>gi|225470674|ref|XP_002269391.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 587
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 138/281 (49%), Gaps = 24/281 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D F + ++ C T G +LH K+ S ++ + MY L ++++ K F
Sbjct: 201 DRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFIGNVIITMYSELNLIQEAEKAF 260
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ E+++++WN +I S + + L +F+ M P + T +
Sbjct: 261 RLIEEKDVISWNTLIAAC----------SHCDDHAKGLRVFKHMTEETNVRPDDFTFTSA 310
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + + + IH + + D+ V N L++ YAKCGCI A +F + +
Sbjct: 311 LAACAGLASMSHGKQIHAHLMRTRLYQ-DLGVGNALVNMYAKCGCIGYAYDIF--SKMVH 367
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
NLVSW TII+GF HG+G+ AVE FE+M G++P+ IG ++G +
Sbjct: 368 HNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNHAGLVDKGQLY 427
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
F+ M E + PDI+H+ CLID+L RAGRL +AEE P
Sbjct: 428 FNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFP 468
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 105/224 (46%), Gaps = 17/224 (7%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T S L+ C G LHA K G QS V+++ + +MY G + ++FDE+
Sbjct: 5 TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEM 64
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
E+NLV+W+ +I+ GY + A+ L+ +M + P+E +V+ A
Sbjct: 65 FEKNLVSWSAMIS----------GYDQAGEPQMAIDLYSQM----FLVPNEYVFASVISA 110
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
V Q IH K G+ + VSN LI Y KC A +F +T N
Sbjct: 111 CASLSAVTLGQKIHSRSLKFGYESISF-VSNSLISMYMKCNQCSDALSVFTNTP--EPNC 167
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGL 249
VS+ +I+GF + + +E F+ M++ GL P+R +G G+
Sbjct: 168 VSYNALITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGI 211
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 108/256 (42%), Gaps = 38/256 (14%)
Query: 9 QIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDM 68
Q+ I +S + + + + ++ +I C +LS LG ++H+ K G++S +V+ +L M
Sbjct: 86 QMAIDLYSQMFLVPNEYVFASVISACASLSAVTLGQKIHSRSLKFGYESISFVSNSLISM 145
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y+ D+ +F PE N V++N +ITG V+ ++ R E L R+
Sbjct: 146 YMKCNQCSDALSVFTNTPEPNCVSYNALITGFVE-------NQQLERGLEFFKLMRQQGL 198
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
P + VL ++ +H K ++ + N +I Y++ I
Sbjct: 199 I----PDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPF-IGNVIITMYSELNLI 253
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEG 248
A K F ++ K+++SW T+I+ A + + K G
Sbjct: 254 QEAEKAFR--LIEEKDVISWNTLIA----------ACSHCDDHAK--------------G 287
Query: 249 LKFFDKMVEECEVLPD 264
L+ F M EE V PD
Sbjct: 288 LRVFKHMTEETNVRPD 303
>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 695
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 152/293 (51%), Gaps = 26/293 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD T ++ C L+ +G + G + + + T+L DMY G + + KL
Sbjct: 220 FDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDTARKL 279
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FDE+ +R++V W+ +I+ GY++ +R EAL LF M P+E+T+++
Sbjct: 280 FDEMDKRDVVAWSAMIS----------GYAQADRCKEALNLFHEMQKGN-VYPNEVTMVS 328
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL + G + +H Y +K+ + + LID YAKCG I + ++F++ S
Sbjct: 329 VLYSCAMLGAYETGKWVHFYIKKKKMK-LTVTLGTQLIDFYAKCGYIDRSVEVFKEMSF- 386
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
KN+ +WT +I G A +G GK A+E F M + +KPN IG ++G
Sbjct: 387 -KNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRH 445
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ M + ++ P I+HYGC++DIL RAG LE+A + +P N VVWRT
Sbjct: 446 LFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFP-PNAVVWRT 497
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 122/217 (56%), Gaps = 14/217 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+S +++ C + G Q+HA+ K GF+S+ +V L MY + G + + +F
Sbjct: 120 DKFTFSSVLKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVF 179
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +PER++V WN +++G K G+ D E + LFR++ E ++T+++V
Sbjct: 180 DGMPERSIVAWNSMLSGYTK-NGLWD---------EVVKLFRKILELR-IEFDDVTMISV 228
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + + +LI Y +G + ++ LID YAKCG + +A KLF++ +D+
Sbjct: 229 LMACGRLANLEIGELIGEYIVSKGLRRNNT-LTTSLIDMYAKCGQVDTARKLFDE--MDK 285
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+++V+W+ +ISG+A KEA+ F MQK + PN
Sbjct: 286 RDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPN 322
>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 939
Score = 147 bits (372), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 145/281 (51%), Gaps = 25/281 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DS T+ L+ L+ N G +H K GF++ + + +L D+Y G + D K+F
Sbjct: 421 DSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVF 480
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ ++++WN +I V + G+ +N E P E T+L +
Sbjct: 481 SYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRT-----------EGLMPDEATVLGI 529
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LP R + IHGY K GF + ++ + N LI+ Y+KCG + + K+F+ +
Sbjct: 530 LPMCSLLAVRRQGKEIHGYIFKSGFES-NVPIGNALIEMYSKCGSLENCIKVFK--YMKE 586
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
K++V+WT +IS F M+G GK+A++ F+ M+ G+ P+ I +EGL+F
Sbjct: 587 KDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRF 646
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
FD+M + + P ++HY C++D+L R+G L QAEE +P
Sbjct: 647 FDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMP 687
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 112/217 (51%), Gaps = 16/217 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT S ++ C +L G +H V K+G V + L MY L+++ ++F
Sbjct: 221 DCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVF 280
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++ ++ VTWN +I G Y+++ R ++ LF M + P ++I +
Sbjct: 281 SKMAVKDSVTWNTMICG----------YAQLGRHEASVKLFMDMI--DGFVPDMLSITST 328
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A ++G+++ + +H Y GF D N LID YAKCG + +A ++F+ T
Sbjct: 329 IRACGQSGDLQVGKFVHKYLIGSGFEC-DTVACNILIDMYAKCGDLLAAQEVFDTTKC-- 385
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
K+ V+W ++I+G+ G KE +E+F +M K+ KP+
Sbjct: 386 KDSVTWNSLINGYTQSGYYKEGLESF-KMMKMERKPD 421
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 136/304 (44%), Gaps = 38/304 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FT+ +I +C + LG +H ++GF+S +Y+ AL DMY L ++ +F
Sbjct: 120 DAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVF 179
Query: 83 DELPERNLVTWNVIITGLVK---WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
+E+ R+ V+WN +I+G W +D Y + FR P T+
Sbjct: 180 EEMSNRDSVSWNSLISGYCSNGFWEDALDMYHK----------FRMTGMV----PDCFTM 225
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+VL A V+ +HG EK G A D+ + N L+ Y K + A ++F +
Sbjct: 226 SSVLLACGSLMAVKEGVAVHGVIEKIGI-AGDVIIGNGLLSMYFKFERLREARRVFSKMA 284
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----RSWR-IGEEGL---- 249
V K+ V+W T+I G+A G + +V+ F M G P+ + R G+ G
Sbjct: 285 V--KDSVTWNTMICGYAQLGRHEASVKLFMDMID-GFVPDMLSITSTIRACGQSGDLQVG 341
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLL 309
KF K + D LID+ + G L A+EV ++ + V W + L
Sbjct: 342 KFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFD--TTKCKDSVTWNS-----L 394
Query: 310 INSY 313
IN Y
Sbjct: 395 INGY 398
>gi|297798072|ref|XP_002866920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312756|gb|EFH43179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 559
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 135/264 (51%), Gaps = 25/264 (9%)
Query: 41 NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGL 100
+LG +H + K + AL DMYV L D+ +F EL +++ V+WN +I+GL
Sbjct: 221 SLGKGIHGLILKRASLISLETGNALIDMYVKCEQLSDAMTVFGELQKKDKVSWNSMISGL 280
Query: 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHG 160
V RSNEA+ LF M +P + +VL A G V + +H
Sbjct: 281 V----------HCERSNEAIELFSMMQTSSGIKPDGHILTSVLSACASLGAVDYGRWVHE 330
Query: 161 YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGM 220
Y G +D H+ ++D YAKCG I +A K+F + RKN+ +W ++ G A+HG
Sbjct: 331 YVLSAGIK-WDTHIGTAIVDMYAKCGYIETALKIF--NGIRRKNVFTWNALLGGLAIHGH 387
Query: 221 GKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKM-VEECEVLPDIKHY 268
G E++ FE M K+G KPN + +EG ++F KM E + P ++HY
Sbjct: 388 GHESLRYFEEMVKLGFKPNLVTFLAILNACCHTGLVDEGRRYFHKMKTREYNLSPKLEHY 447
Query: 269 GCLIDILERAGRLEQAEEVASGIP 292
GCLID+ RAG L++A E+ +P
Sbjct: 448 GCLIDLFCRAGLLDEALELIKAMP 471
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 94/332 (28%), Positives = 150/332 (45%), Gaps = 42/332 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ + + C S G Q+H +K+GF +YV +L Y G +++ K+F
Sbjct: 105 DMFTFPPVFKACGKFSGIREGKQIHGTVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVF 164
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++P R++V+ WTGII G++R EAL F +M EP+ T +
Sbjct: 165 DQMPVRDVVS----------WTGIITGFTRTGLYKEALDTFSKMD----VEPNLATYVCA 210
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + + G + + IHG KR + + N LID Y KC + A +F + + +
Sbjct: 211 LVSSGRVGCLSLGKGIHGLILKRA-SLISLETGNALIDMYVKCEQLSDAMTVFGE--LQK 267
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQ-KVGLKPNRSW------RIGEEGLKFFDKM 255
K+ VSW ++ISG EA+E F MQ G+KP+ G + +
Sbjct: 268 KDKVSWNSMISGLVHCERSNEAIELFSMMQTSSGIKPDGHILTSVLSACASLGAVDYGRW 327
Query: 256 VEECEVLPDIK---HYG-CLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLIN 311
V E + IK H G ++D+ + G +E A ++ +GI + NV W L I+
Sbjct: 328 VHEYVLSAGIKWDTHIGTAIVDMYAKCGYIETALKIFNGIRRK--NVFTWNALLGGLAIH 385
Query: 312 SYFFSPITLNSQRLFFFPAALYALTQILGFKP 343
+ + L +F + LGFKP
Sbjct: 386 GH-------GHESLRYFEEMVK-----LGFKP 405
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 7/137 (5%)
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
+ ++ Y+ ++ + ++R + ++ P T V A K +R + IHG
Sbjct: 74 YNTLLSSYAVCDKPRMTIFVYRVFVSNGFS-PDMFTFPPVFKACGKFSGIREGKQIHGTV 132
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
K GF DI+V N L+ Y CG +A K+F+ V +++VSWT II+GF G+ K
Sbjct: 133 TKMGFYD-DIYVQNSLVHFYGVCGESRNACKVFDQMPV--RDVVSWTGIITGFTRTGLYK 189
Query: 223 EAVENFERMQKVGLKPN 239
EA++ F +M ++PN
Sbjct: 190 EALDTFSKMD---VEPN 203
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 104/226 (46%), Gaps = 19/226 (8%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
+ + S + P D + ++ C +L + G +H G + ++ TA+ DMY
Sbjct: 296 MQTSSGIKP--DGHILTSVLSACASLGAVDYGRWVHEYVLSAGIKWDTHIGTAIVDMYAK 353
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY 131
G+++ + K+F+ + +N+ TWN ++ GL I G+ +E+L F M +
Sbjct: 354 CGYIETALKIFNGIRRKNVFTWNALLGGLA-----IHGH-----GHESLRYFEEMVKLGF 403
Query: 132 TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN-AFDIHVSNCLIDTYAKCGCIFS 190
+P+ +T LA+L A G V + + R +N + + CLID + + G +
Sbjct: 404 -KPNLVTFLAILNACCHTGLVDEGRRYFHKMKTREYNLSPKLEHYGCLIDLFCRAGLLDE 462
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHG----MGKEAVENFERMQ 232
A +L + V + ++ ++S G + KE +++F M+
Sbjct: 463 ALELIKAMPV-KPDVRICGAVLSACKSRGTLMELPKEILDSFLEME 507
>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 822
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 153/302 (50%), Gaps = 27/302 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT S ++ C LG QLH + KVGF VYV+ AL D+Y + + KLF
Sbjct: 347 NEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLF 406
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
EL +N+V+WN +I GY + +AL +FR A +E+T +
Sbjct: 407 AELSSKNVVSWNTVIV----------GYENLGEGGKALNMFRE-ALRNQVSVTEVTFSSA 455
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + +HG K NA + VSN LID YAKCG I A +F + ++
Sbjct: 456 LGACASLASMELGVQVHGLAIKTN-NAKRVAVSNSLIDMYAKCGDIKVAQTVFNE--MET 512
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
++ SW +ISG++ HG+G++A+ F+ M+ KPN +G ++G
Sbjct: 513 IDVASWNALISGYSTHGLGRQALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLIDQGQDC 572
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLIN 311
F+ M+ + + P ++HY C++ + R+G+L++A + GIP + +V++WR L +N
Sbjct: 573 FESMICDHGIEPCLEHYTCMVRLFGRSGQLDKAMNLIEGIPYE-PSVMIWRA-MLSASMN 630
Query: 312 SY 313
Y
Sbjct: 631 QY 632
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 110/208 (52%), Gaps = 18/208 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+++T+ ++ + L + +H K ++ V L +Y LG + D+ K+F
Sbjct: 246 NNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVF 305
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+P+ ++V W+ +I + +G+ N+A+ +F RM + P+E T+ ++
Sbjct: 306 NEMPKNDVVPWSFMIARFCQ-----NGF-----CNKAVDIFIRMRE-GFVVPNEFTLSSI 354
Query: 143 LP--AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
L AI K + + +HG K GF+ D++VSN LID YAKC + +A KLF + S
Sbjct: 355 LNGCAIGKCSGLG--EQLHGLVVKVGFD-LDVYVSNALIDVYAKCEKMDTAVKLFAELS- 410
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENF 228
KN+VSW T+I G+ G G +A+ F
Sbjct: 411 -SKNVVSWNTVIVGYENLGEGGKALNMF 437
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 22/222 (9%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P DS Y ++R C+ + +H K G ++ L + YV GF KD+
Sbjct: 45 PCLDSHAYGTMLRRCIRKNDSVSAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDAL 104
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
LFDE+PERN V++ V +T + YSR++R L P T
Sbjct: 105 NLFDEMPERNNVSY-VTLTQGYACQDPVGLYSRLHREGHEL------------NPHVFTS 151
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGF--NAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
L E+ C +H K G+ NAF V LI+ Y+ CG + SA +FE
Sbjct: 152 FLKLFVSLDKAEI--CWWLHSPIVKLGYDSNAF---VGAALINAYSVCGSVDSARSVFE- 205
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+ K++V W I+S + +G +++++ RM G PN
Sbjct: 206 -GILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPN 246
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 132/305 (43%), Gaps = 31/305 (10%)
Query: 9 QIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDM 68
+++ H P +F SF F V+L + LH+ K+G+ S+ +V AL +
Sbjct: 136 RLHREGHELNPHVFTSFLKLF-----VSLDKAEICWWLHSPIVKLGYDSNAFVGAALINA 190
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y G + + +F+ ++ +V W GI+ Y ++L L RM
Sbjct: 191 YSVCGSVDSARSVFE----------GILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGM 240
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
+ P+ T L A G + +HG K + D V L+ Y + G +
Sbjct: 241 DGFM-PNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYE-LDPRVGVGLLQLYTQLGDM 298
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-------- 240
A K+F + + + ++V W+ +I+ F +G +AV+ F RM++ + PN
Sbjct: 299 SDAFKVFNE--MPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILN 356
Query: 241 SWRIGE-EGL-KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNV 298
IG+ GL + +V + D+ LID+ + +++ A ++ + + S+ NV
Sbjct: 357 GCAIGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSK--NV 414
Query: 299 VVWRT 303
V W T
Sbjct: 415 VSWNT 419
>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g68930 [Vitis vinifera]
gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
Length = 743
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 150/293 (51%), Gaps = 26/293 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D FT+ ++ C +L G Q+HA + + +V+V +AL DMY +K + +
Sbjct: 268 MDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETV 327
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F +P++N+++ WT ++ GY + S EA+ +F M EP + T+ +
Sbjct: 328 FKRMPQKNVIS----------WTAMLVGYGQNGFSEEAVKIFFEMQR-NGVEPDDFTLGS 376
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
V+ + + H G +F I VSN LI Y KCG ++ +LF T ++
Sbjct: 377 VISSCANLASLEEGAQFHCRALVSGLISF-ITVSNALITLYGKCGSTENSHRLF--TEMN 433
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
++ VSWT +++G+A G E + FERM GLKP+ IG E+GL+
Sbjct: 434 IRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQ 493
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+F+ M++E ++P + H C+ID+L RAGRLE+A + +P +VV W T
Sbjct: 494 YFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCH-PDVVGWAT 545
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 126/244 (51%), Gaps = 35/244 (14%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
+ T+S ++ C +LG Q++ K GF S V+V + L DMY LG + D+ +
Sbjct: 136 LNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRY 195
Query: 82 FDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEAL 120
FDE+PERN+V N +ITGL++ WT +I G + EAL
Sbjct: 196 FDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREAL 255
Query: 121 ALFRRM-----AACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS 175
+FR M A ++T S +T L A+ GE + IH Y R + ++ V
Sbjct: 256 DMFREMRLAGFAMDQFTFGSVLTACGSLLAL---GEGKQ---IHAY-VIRTDHKDNVFVG 308
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
+ L+D Y+KC I SA +F+ + +KN++SWT ++ G+ +G +EAV+ F MQ+ G
Sbjct: 309 SALVDMYSKCRSIKSAETVFK--RMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNG 366
Query: 236 LKPN 239
++P+
Sbjct: 367 VEPD 370
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 96/210 (45%), Gaps = 17/210 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT +I +C L+ G Q H G S + V+ AL +Y G ++S +LF
Sbjct: 370 DDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLF 429
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E+ R+ V+W T ++ GY++ ++NE + LF RM A +P +T + V
Sbjct: 430 TEMNIRDEVSW----------TALLAGYAQFGKANETIGLFERMLA-HGLKPDGVTFIGV 478
Query: 143 LPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A + G V + Q ++ G H + C+ID + G + A +
Sbjct: 479 LSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCT-CIIDLLGRAGRLEEARNFINNMPC- 536
Query: 202 RKNLVSWTTIISGFAMHG---MGKEAVENF 228
++V W T++S +HG +GK A ++
Sbjct: 537 HPDVVGWATLLSSCRVHGDMEIGKWAADSL 566
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 60/264 (22%), Positives = 108/264 (40%), Gaps = 51/264 (19%)
Query: 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP 86
Y+ L++ C +LH + K Q +++ L Y LG L + +FD +P
Sbjct: 8 YASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIP 67
Query: 87 ERNLVTWNVIIT-----GL----------------VKWTGIIDGYSRMNRSNEALALFRR 125
+ NL +WN I++ GL V W I GY+ ++A+ +++
Sbjct: 68 QPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKL 127
Query: 126 MAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC 185
M + IT +L K V + I+G K GF + D+ V + L+D Y K
Sbjct: 128 MLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGS-DVFVGSPLVDMYTKL 186
Query: 186 GCIFSASKLFED-----------------------------TSVDRKNLVSWTTIISGFA 216
G I+ A + F++ + ++ +SWT +I+G
Sbjct: 187 GLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLM 246
Query: 217 MHGMGKEAVENFERMQKVGLKPNR 240
+G+ +EA++ F M+ G ++
Sbjct: 247 QNGLEREALDMFREMRLAGFAMDQ 270
>gi|225470997|ref|XP_002266598.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
gi|297742795|emb|CBI35475.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 154/321 (47%), Gaps = 38/321 (11%)
Query: 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF 74
HS L P DSF + C + G +H + + S V AL DMY G
Sbjct: 96 HSGLRP--DSFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGA 153
Query: 75 LKDSSKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRM 113
++ + +F + +++ +W ++ G +K WT +I GY +
Sbjct: 154 IEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQG 213
Query: 114 NRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIH 173
L LF+ M A P+ ITI+AVL G +HGY K + D+
Sbjct: 214 EVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLD-LDVT 272
Query: 174 VSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
V+N L+D YAK G + A K+F++ + ++++ SWTT+ISG A+HG G A+E F M K
Sbjct: 273 VNNALMDMYAKSGALVLALKIFQE--MPKRDVFSWTTMISGLALHGKGTHALEAFSDMSK 330
Query: 234 VGLKPNRSWRIGE-----------EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLE 282
G+ PN + EG F KMV+ + P I+HYGC++D+L RAG L
Sbjct: 331 SGVVPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLR 390
Query: 283 QAEEVASGIPSQITNVVVWRT 303
+A+E+ +P + + V+WR+
Sbjct: 391 EAKELIEHMPIK-PDSVIWRS 410
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 96/203 (47%), Gaps = 28/203 (13%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
T ++ C + +LG+ +H +K V VN AL DMY G L + K+F E
Sbjct: 237 ITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQE 296
Query: 85 LPERNLVTWNVIITGLV---KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
+P+R++ +W +I+GL K T ++ +S M++S P+E+T+L+
Sbjct: 297 MPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSG--------------VVPNEVTLLS 342
Query: 142 VLPAIWKNG---EVRNC--QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
VL A G E R+ +++ +G K + C++D + G + A +L E
Sbjct: 343 VLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHY-----GCMVDLLGRAGLLREAKELIE 397
Query: 197 DTSVDRKNLVSWTTIISGFAMHG 219
+ + + V W +++S +HG
Sbjct: 398 HMPI-KPDSVIWRSLLSACLVHG 419
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 114/256 (44%), Gaps = 32/256 (12%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF--QSHVYVNTALGDMYVSLGFLKDSS 79
++ T+ FL++ C +L Q+H +G ++ L + Y LG D+
Sbjct: 1 MNTQTFYFLLQKCGSLEKLK---QIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQ 57
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
K+F+ + ++V+W T +I Y ++ +A ++F + P +
Sbjct: 58 KVFNHIQNPDIVSW----------TCLISLYLHTSQPCKAFSIFSHLFH-SGLRPDSFCV 106
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+ + A ++ N +++HG + + D V N LID Y++ G I A +F+ +
Sbjct: 107 VGAVSACGHRKDLSNGRIVHGMVFRFELGS-DPIVGNALIDMYSRSGAIEVACSVFK--T 163
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI-------GE---EGL 249
++ K++ SWT++++GF + A F+ M ++ + SW GE GL
Sbjct: 164 MEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMP---MRNSVSWTAMITGYVQGEVPIPGL 220
Query: 250 KFFDKMVEECEVLPDI 265
+ F +M E + P +
Sbjct: 221 ELFQEMRAEGKDWPTV 236
>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
Length = 629
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 97/295 (32%), Positives = 153/295 (51%), Gaps = 30/295 (10%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
FT + + + N G +H K+G+ S V V+ +L DMY ++D+ ++F+
Sbjct: 238 FTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEM 297
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ E+++ +WN I++ + + G DG L L RM +P +T+ VLP
Sbjct: 298 MREKDIFSWNSIVS-VHEQCGDHDG---------TLRLLDRMLGAG-IQPDLVTVTTVLP 346
Query: 145 AIWKNGEVRNCQLIHGYG-----EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
A + + + IHGY K G + D+ + N +ID YAKCG + A +FE S
Sbjct: 347 ACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMS 406
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
K++ SW +I G+ MHG G EA+E F RM +V LKP+ +G +G
Sbjct: 407 --NKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQG 464
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F +M + +V P I+HY C+ID+L RAG+L++A E+A +P + N VVWR
Sbjct: 465 RNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIE-ANPVVWRA 518
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 112/217 (51%), Gaps = 17/217 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ I+ C+ + ++H + K G + V++ +AL + Y+ G ++ + F
Sbjct: 138 DKFTFPCAIKACLDVLEIK---KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAF 194
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ELP R++V WN +++GY+++ + L FRRM E PS T+
Sbjct: 195 EELPIRDVVLWN----------AMVNGYAQIGQFEMVLETFRRMND-ESVVPSRFTVTGX 243
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L G++ N ++IHG+ K G+++ + VSN LID Y KC CI A ++FE +
Sbjct: 244 LSVFAVMGDLNNGRIIHGFAMKMGYDS-GVAVSNSLIDMYGKCKCIEDALEIFE--MMRE 300
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
K++ SW +I+S G + +RM G++P+
Sbjct: 301 KDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPD 337
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 17/158 (10%)
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D E N+ +N II+G I +G+ E +++M E P + T
Sbjct: 97 DPTHEINVFAFNAIISGF-----ITNGFPE-----EGFEFYQKMRN-EGVMPDKFTFPCA 145
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A E++ IHG K G D+ + + L++ Y K G + A FE+ +
Sbjct: 146 IKACLDVLEIKK---IHGLLFKFGLE-LDVFIGSALVNCYLKFGLMEHAQVAFEELPI-- 199
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+++V W +++G+A G + +E F RM + P+R
Sbjct: 200 RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSR 237
>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
Length = 534
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 107/331 (32%), Positives = 172/331 (51%), Gaps = 47/331 (14%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
FTYS ++R C L NL QLH K+G S V+V +AL D+Y G L+++ ++FDE
Sbjct: 67 FTYSSVLRACDGLF--NL-RQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDE 123
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ +LV W+ II G+++ + +EAL LF+RM + + T+ +VL
Sbjct: 124 MVTGDLVVWSSIIA----------GFAQNSDGDEALRLFKRMKRAGFL-AQQTTLTSVLR 172
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A + + +H + K D+ ++N L+D Y KCG + A+ +F + K+
Sbjct: 173 ACTGLALLELGRQVHVHVLKYD---QDLILNNALLDMYCKCGSLEDANAVF--VRMVEKD 227
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFD 253
++SW+T+I+G A +G KEA++ FE M+ +G+KPN +G EEGL +F
Sbjct: 228 VISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFH 287
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSY 313
M E + P +HYGC+ID+L RAGRL +A ++ + + + + V WR
Sbjct: 288 SMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECE-PDAVTWRA---------- 336
Query: 314 FFSPITLNSQRLFF-FPAALYALTQILGFKP 343
LN+ R+ A++A QIL P
Sbjct: 337 -----LLNACRVHRNVDVAIHAAKQILRLDP 362
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 131/287 (45%), Gaps = 39/287 (13%)
Query: 65 LGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFR 124
L +MYV G L D+ +FD++P+RN+V+ WT +I YS +++AL
Sbjct: 6 LINMYVKFGLLHDAQDVFDKMPDRNVVS----------WTTMISAYSAAKLNDKALEFLV 55
Query: 125 RMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK 184
M E P+ T +VL A + N + +H K G ++ D+ V + LID Y++
Sbjct: 56 LMLR-EGVRPNMFTYSSVLRAC---DGLFNLRQLHCCIIKIGLDS-DVFVRSALIDVYSR 110
Query: 185 CGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI 244
G + +A ++F++ +LV W++II+GFA + G EA+ F+RM++ G ++
Sbjct: 111 WGELENALRVFDEMVT--GDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLT 168
Query: 245 GE----EGLKFFD----KMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQIT 296
GL + V + D+ L+D+ + G LE A V + +
Sbjct: 169 SVLRACTGLALLELGRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEK-- 226
Query: 297 NVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAALYALTQILGFKP 343
+V+ W T L N Y + L+ ++LG KP
Sbjct: 227 DVISWSTMIAGLAQNGYSKEALK------------LFESMKVLGIKP 261
>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g31430-like [Glycine max]
Length = 591
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 150/315 (47%), Gaps = 37/315 (11%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
+ C L LG ++H + + + N AL DMY G + + ++FD + +N+
Sbjct: 217 LSACAVLRNLELGKEIHDYIANELDLTPIMGN-ALLDMYCKCGCVSVAREIFDAMIVKNV 275
Query: 91 VTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALALFRRMAAC 129
W ++TG +V WT +I+GY + N +A+ALF M
Sbjct: 276 NCWTSMVTGYVICGQLDQARYLFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQI- 334
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
EP + ++ +L + G + + IH Y ++ D VS LI+ YAKCGCI
Sbjct: 335 RGVEPDKFIVVTLLTGCAQLGALEQGKWIHNYIDENRIK-MDAVVSTALIEMYAKCGCIE 393
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG---- 245
+ ++F + + SWT+II G AM+G EA+E FE MQ GLKP+ +
Sbjct: 394 KSLEIF--NGLKDMDTTSWTSIICGLAMNGKTSEALELFEAMQTCGLKPDDITFVAVLSA 451
Query: 246 -------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNV 298
EEG K F M + P+++HYGC ID+L RAG L++AEE+ +P Q +
Sbjct: 452 CGHAGLVEEGRKLFHSMSSIYHIEPNLEHYGCFIDLLGRAGLLQEAEELVKKLPDQNNEI 511
Query: 299 VVWRTGFLRLLINSY 313
+V G L +Y
Sbjct: 512 IVPLYGALLSACRTY 526
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 116/213 (54%), Gaps = 24/213 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++TY ++++ + G ++HA K G + YV +L DMY LG ++ +++F
Sbjct: 107 DNYTYPYVLKGIGCIGEVREGEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVF 166
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+PER+ V+WN++I+ GY R R EA+ ++RRM +P+E T+++
Sbjct: 167 EEMPERDAVSWNIMIS----------GYVRCKRFEEAVDVYRRMQMESNEKPNEATVVST 216
Query: 143 LPAIWKNGEVRNCQL---IHGYGEKRGFNAFDIH--VSNCLIDTYAKCGCIFSASKLFED 197
L A +RN +L IH Y N D+ + N L+D Y KCGC+ A ++F+
Sbjct: 217 LSAC---AVLRNLELGKEIHDYIA----NELDLTPIMGNALLDMYCKCGCVSVAREIFDA 269
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
V KN+ WT++++G+ + G +A FER
Sbjct: 270 MIV--KNVNCWTSMVTGYVICGQLDQARYLFER 300
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 133/292 (45%), Gaps = 35/292 (11%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALG--DMYVSLGFLKDSSKLFD 83
TY L+++C ++S Q+ A G Q + L M SLG ++++F+
Sbjct: 10 TYISLLKSCKSMSQLK---QIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIFN 66
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
+ +L +N++I VK + A++LF+++ P T VL
Sbjct: 67 HIHHPSLFIYNLMIKAFVKRGSL----------RSAISLFQQLRE-RGVWPDNYTYPYVL 115
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
I GEVR + IH + K G FD +V N L+D YA+ G + +++FE+ + +
Sbjct: 116 KGIGCIGEVREGEKIHAFVVKTGLE-FDPYVCNSLMDMYAELGLVEGFTQVFEE--MPER 172
Query: 204 NLVSWTTIISGFAMHGMGKEAVENFERMQ-KVGLKPNRSWRIG-----------EEGLKF 251
+ VSW +ISG+ +EAV+ + RMQ + KPN + + E G +
Sbjct: 173 DAVSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEI 232
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
D + E ++ P + + L+D+ + G + A E+ + + NV W +
Sbjct: 233 HDYIANELDLTPIMGN--ALLDMYCKCGCVSVAREIFDAMI--VKNVNCWTS 280
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 15/176 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D F L+ C L G +H + + V+TAL +MY G ++ S ++F
Sbjct: 340 DKFIVVTLLTGCAQLGALEQGKWIHNYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIF 399
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMN-RSNEALALFRRMAACEYTEPSEITILA 141
+ L + + +W II GL MN +++EAL LF M C +P +IT +A
Sbjct: 400 NGLKDMDTTSWTSIICGLA-----------MNGKTSEALELFEAMQTCGL-KPDDITFVA 447
Query: 142 VLPAIWKNGEVRNC-QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
VL A G V +L H ++ C ID + G + A +L +
Sbjct: 448 VLSACGHAGLVEEGRKLFHSMSSIYHIEP-NLEHYGCFIDLLGRAGLLQEAEELVK 502
>gi|357464703|ref|XP_003602633.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491681|gb|AES72884.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 647
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 99/319 (31%), Positives = 156/319 (48%), Gaps = 43/319 (13%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
+ D FT L+ C L Q+H V + VGF++++ +N AL D Y G S
Sbjct: 209 MLDEFTLVSLVSNCSCLDTVKWLRQVHGVATIVGFRTNLILNNALIDAYGKCGEPNSSFC 268
Query: 81 LFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEA 119
LF + E++ V+W ++ V W +I G+ + R EA
Sbjct: 269 LFRSMVEKDAVSWTSMVVTYTRASRIDDACKVFNEMPVKYTVSWAALISGFVKNGRCYEA 328
Query: 120 LALFRRMAACEYTEPSEITILAVL-----PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHV 174
L +F +M E P T ++VL A+ G+ +CQ+I G + N F+++V
Sbjct: 329 LEVFHQMIK-EGVLPRAQTFVSVLDACASEALIGRGKQVHCQIIRG---RSSDNLFNVYV 384
Query: 175 SNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
N L+D YAKCG + SA LFE + K++VSW T+I+GFA +G G++++ F+RM +
Sbjct: 385 FNALMDMYAKCGDMKSAENLFE-MMIHVKDVVSWNTLITGFAQNGRGEDSLAVFDRMIES 443
Query: 235 GLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQ 283
++PN +G GL+ D M V P HY LID+L R RLE+
Sbjct: 444 NIEPNHVTFLGVLSACNHAGLVNAGLELLDSMERRYGVKPKSNHYALLIDLLGRKNRLEE 503
Query: 284 AEEVASGIPSQITN-VVVW 301
A + +P++I+N + +W
Sbjct: 504 AMCLIEKVPNEISNHIAMW 522
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/344 (24%), Positives = 135/344 (39%), Gaps = 72/344 (20%)
Query: 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP 86
+S LI CV+ G LH+ K ++ L D+Y G + K FD+LP
Sbjct: 81 FSSLISNCVSAKSLKHGKALHSQLIKTALFFETFLANGLIDLYSKCGCKESIHKAFDDLP 140
Query: 87 ERNLVTWNVIIT---------------------GLVKWTGIIDGYSRMNRSNEALALFRR 125
+ TWN +++ LV + +I G +R EA+ FR
Sbjct: 141 NKTTRTWNTLLSFYSKKGVFNQAYKLFDEMPQRNLVSYNSLISGLTRHEFHKEAVKFFRE 200
Query: 126 MA-ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK 184
M E T+++++ V+ + +HG GF ++ ++N LID Y K
Sbjct: 201 MQNGVGGLMLDEFTLVSLVSNCSCLDTVKWLRQVHGVATIVGFRT-NLILNNALIDAYGK 259
Query: 185 CG------CIF-------------------------SASKLFEDTSVDRKNLVSWTTIIS 213
CG C+F A K+F + V K VSW +IS
Sbjct: 260 CGEPNSSFCLFRSMVEKDAVSWTSMVVTYTRASRIDDACKVFNEMPV--KYTVSWAALIS 317
Query: 214 GFAMHGMGKEAVENFERMQKVGLKPNRSWRI------GEEGLKFFDKMVEECEV------ 261
GF +G EA+E F +M K G+ P + E L K V C++
Sbjct: 318 GFVKNGRCYEALEVFHQMIKEGVLPRAQTFVSVLDACASEALIGRGKQV-HCQIIRGRSS 376
Query: 262 --LPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
L ++ + L+D+ + G ++ AE + + + +VV W T
Sbjct: 377 DNLFNVYVFNALMDMYAKCGDMKSAENLFE-MMIHVKDVVSWNT 419
>gi|357447703|ref|XP_003594127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365519|gb|ABN09753.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355483175|gb|AES64378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 727
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 94/293 (32%), Positives = 140/293 (47%), Gaps = 35/293 (11%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G QLH K GF + ++ T + Y + G + + F+ + +L +WN + G +K
Sbjct: 336 GWQLHGTVVKRGFDCYNFIQTTIIYFYAACGMMDLACLQFEVGVKDHLESWNALTAGFIK 395
Query: 103 ---------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
W+ +I GY++ AL LF +M A +P+E+T+++
Sbjct: 396 NGMMDHALKTFDKMHVRDVFSWSTMISGYAQSEHPKMALELFHKMLA-GGIKPNEVTMVS 454
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
V AI G ++ +L H Y F+ ++ LID YAKCG I SA + F +
Sbjct: 455 VFSAIATLGTLQEGKLAHEYMRSESI-PFNDNLRAALIDMYAKCGSINSALQFFNQIRDE 513
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
++ W II G A HG +E F MQ+ +KPN IG E G +
Sbjct: 514 VSSVSPWNAIICGLASHGHASMCLEVFSDMQRFHIKPNPITFIGVLSACCHAGLVESGKR 573
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F M V PDIKHYGC+IDIL RAG LE+AEE+ +P + ++V+W T
Sbjct: 574 IFKTMKSAYNVEPDIKHYGCMIDILGRAGLLEEAEEMIRSMPME-ADIVIWGT 625
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/278 (25%), Positives = 135/278 (48%), Gaps = 54/278 (19%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
+++C +LS+ + G Q+H++ K+G + ++ +L +MY G +K++ LFD +
Sbjct: 60 LKSCSSLSFISQGRQIHSLIFKLGLHFNTFIQNSLINMYAKCGDIKNAQLLFDGFATLDS 119
Query: 91 VTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALALFRRMAAC 129
V+ N++++G V+ +T +I G+ + EAL +F+ M +C
Sbjct: 120 VSCNIMVSGYVRNGQIDNARKLFDVMPNKGCVSYTTMIMGFVQNGFFREALEVFKDMRSC 179
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
P+++T++ V+ A GEV NC+++HG K F + VS L+ Y C +
Sbjct: 180 GVV-PNDLTLVNVISACSHLGEVLNCRMVHGLVVKM-FVVGLVIVSTNLMHAYCLCSGVR 237
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGL 249
A +LF++ + +NLV+W +++G+A G+ EA E
Sbjct: 238 EARRLFDE--MPERNLVTWNVMLNGYAKTGLVDEARE----------------------- 272
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
FD + ++ D+ +G +ID + GRL +A E+
Sbjct: 273 -LFDGICDK-----DVISWGTMIDGYIQKGRLREALEI 304
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 86/340 (25%), Positives = 141/340 (41%), Gaps = 64/340 (18%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T +I C L +H + K+ V V+T L Y ++++ +LF
Sbjct: 184 NDLTLVNVISACSHLGEVLNCRMVHGLVVKMFVVGLVIVSTNLMHAYCLCSGVREARRLF 243
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
DE+PERNLVTWNV++ G K W +IDGY + R EAL
Sbjct: 244 DEMPERNLVTWNVMLNGYAKTGLVDEARELFDGICDKDVISWGTMIDGYIQKGRLREALE 303
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
++R M + P+E+ I+ ++ A + + + +HG KRGF+ ++ + +I
Sbjct: 304 IYRAMLQTGHG-PNEVMIVNLVSACGRGTAIVDGWQLHGTVVKRGFDCYNF-IQTTIIYF 361
Query: 182 YAKCGCIFSASKLFEDTSVDR-----------------------------KNLVSWTTII 212
YA CG + A FE D +++ SW+T+I
Sbjct: 362 YAACGMMDLACLQFEVGVKDHLESWNALTAGFIKNGMMDHALKTFDKMHVRDVFSWSTMI 421
Query: 213 SGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEV 261
SG+A K A+E F +M G+KPN + +EG + M E
Sbjct: 422 SGYAQSEHPKMALELFHKMLAGGIKPNEVTMVSVFSAIATLGTLQEGKLAHEYMRSESIP 481
Query: 262 LPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
D LID+ + G + A + + I ++++V W
Sbjct: 482 FND-NLRAALIDMYAKCGSINSALQFFNQIRDEVSSVSPW 520
>gi|326511827|dbj|BAJ92058.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 581
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 150/295 (50%), Gaps = 27/295 (9%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
+ D T + C +G HA+ GF+ + Y+ ++L MY G ++D+ +
Sbjct: 193 MLDDVTLLNALVACARTCMMKVGKLCHALLVTNGFEINCYMGSSLISMYAKCGQVEDARR 252
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD +P+RN V WT +I GY+++ +S EA+ LFR M + + TI
Sbjct: 253 IFDGMPDRNAVC----------WTSMISGYTQLGQSKEAIKLFRDMQIAG-VKVDDATIS 301
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
V+ + + G + + +H Y + G DI V N LID Y+KCG I A +F V
Sbjct: 302 TVVSSCGQMGALDLGRYVHAYCDIHGLGK-DISVKNSLIDMYSKCGDIKKAYDIFCGM-V 359
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNRSWRIG-----------EEG 248
R N SWT II GFA +G+ EA++ F +M++ G+ PN +G E+G
Sbjct: 360 KRDNF-SWTVIIMGFAANGLSGEALDLFAQMEEEGGVMPNEITFLGVLTSCSHGGLVEQG 418
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ F +M + P I+HYGC++D+L RA L +AE+ +P + V+WR+
Sbjct: 419 YRHFHRMSSIYGIAPRIEHYGCMVDLLGRAKLLAEAEQFIKEMPIA-PDAVMWRS 472
Score = 100 bits (250), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 132/282 (46%), Gaps = 26/282 (9%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D+++ S + T + +G QLHA+ K+G S +V L +MY S + + +
Sbjct: 91 IDNYSLSAALSTAARMPSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSV 150
Query: 82 FDELPE--RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
D P+ + V+WN II GY N+AL F +MA + ++T+
Sbjct: 151 LDSAPKGASDTVSWNTIIA----------GYIHAGLPNKALQAFSQMAKGQVML-DDVTL 199
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
L L A + ++ +L H GF + ++ + LI YAKCG + A ++F+
Sbjct: 200 LNALVACARTCMMKVGKLCHALLVTNGFE-INCYMGSSLISMYAKCGQVEDARRIFD--G 256
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW------RIGEEGLKFFD 253
+ +N V WT++ISG+ G KEA++ F MQ G+K + + G+ G
Sbjct: 257 MPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLG 316
Query: 254 KMVEE-CEVL---PDIKHYGCLIDILERAGRLEQAEEVASGI 291
+ V C++ DI LID+ + G +++A ++ G+
Sbjct: 317 RYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGM 358
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 81/191 (42%), Gaps = 35/191 (18%)
Query: 131 YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190
Y+ + ++ A +P++ + +H K G ++ D V N LI+ Y+ C +
Sbjct: 94 YSLSAALSTAARMPSVVVGAQ------LHALSVKLGLSS-DTFVLNTLINMYSSCSYPST 146
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLK 250
A + + + VSW TII+G+ G+ +A++ F +M K ++ + +
Sbjct: 147 ARSVLDSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAK--------GQVMLDDVT 198
Query: 251 FFDKMV-----------EECEVLP-----DIKHY--GCLIDILERAGRLEQAEEVASGIP 292
+ +V + C L +I Y LI + + G++E A + G+P
Sbjct: 199 LLNALVACARTCMMKVGKLCHALLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFDGMP 258
Query: 293 SQITNVVVWRT 303
+ N V W +
Sbjct: 259 DR--NAVCWTS 267
>gi|147791533|emb|CAN68456.1| hypothetical protein VITISV_025676 [Vitis vinifera]
Length = 768
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 99/321 (30%), Positives = 153/321 (47%), Gaps = 38/321 (11%)
Query: 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF 74
HS L P DSF + C + G +H + + S V AL DMY G
Sbjct: 347 HSGLRP--DSFCVVGAVSACGHRKDLSNGRIVHGMVFRFELGSDPIVGNALIDMYSRSGA 404
Query: 75 LKDSSKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRM 113
++ + +F + +++ +W ++ G +K WT +I GY +
Sbjct: 405 IEVACSVFKTMEIKDVSSWTSLLNGFIKCNDIEAARRIFDEMPMRNSVSWTAMITGYVQG 464
Query: 114 NRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIH 173
L LF+ M A P+ ITI+AVL G +HGY K + D+
Sbjct: 465 EVPIPGLELFQEMRAEGKDWPTVITIVAVLSGCADIGAFDLGSSVHGYVNKTNLD-LDVT 523
Query: 174 VSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
V+N L+D YAK G + A K+F++ + ++++ SWTT+ISG A+HG G A+E F M K
Sbjct: 524 VNNALMDMYAKSGALVLALKIFQE--MPKRDVFSWTTMISGLALHGKGTHALEAFSDMSK 581
Query: 234 VGLKPNRSWRIGE-----------EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLE 282
G PN + EG F KMV+ + P I+HYGC++D+L RAG L
Sbjct: 582 SGXXPNEVTLLSVLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHYGCMVDLLGRAGLLR 641
Query: 283 QAEEVASGIPSQITNVVVWRT 303
+A+E+ +P + + V+WR+
Sbjct: 642 EAKELIEHMPIK-PDSVIWRS 661
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 96/203 (47%), Gaps = 28/203 (13%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
T ++ C + +LG+ +H +K V VN AL DMY G L + K+F E
Sbjct: 488 ITIVAVLSGCADIGAFDLGSSVHGYVNKTNLDLDVTVNNALMDMYAKSGALVLALKIFQE 547
Query: 85 LPERNLVTWNVIITGLV---KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
+P+R++ +W +I+GL K T ++ +S M++S P+E+T+L+
Sbjct: 548 MPKRDVFSWTTMISGLALHGKGTHALEAFSDMSKSG--------------XXPNEVTLLS 593
Query: 142 VLPAIWKNG---EVRNC--QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
VL A G E R+ +++ +G K + C++D + G + A +L E
Sbjct: 594 VLSACSHAGLVVEGRSLFQKMVQCHGIKPKIQHY-----GCMVDLLGRAGLLREAKELIE 648
Query: 197 DTSVDRKNLVSWTTIISGFAMHG 219
+ + + V W +++S +HG
Sbjct: 649 HMPI-KPDSVIWRSLLSACLVHG 670
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 112/256 (43%), Gaps = 32/256 (12%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF--QSHVYVNTALGDMYVSLGFLKDSS 79
++ T+ FL++ C +L Q+H +G ++ L + Y LG D+
Sbjct: 252 MNTQTFYFLLQKCGSLEKLK---QIHGKAVTLGLLCSKRQHLACKLLNTYTQLGSPVDAQ 308
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
K+F+ + ++V+W T +I Y ++ +A ++F + P +
Sbjct: 309 KVFNHIQNPDIVSW----------TCLISLYLHTSQPCKAFSIFSHLFHSGL-RPDSFCV 357
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+ + A ++ N +++HG + + D V N LID Y++ G I A +F+
Sbjct: 358 VGAVSACGHRKDLSNGRIVHGMVFRFELGS-DPIVGNALIDMYSRSGAIEVACSVFKTME 416
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI-------GE---EGL 249
+ K++ SWT++++GF + A F+ M ++ + SW GE GL
Sbjct: 417 I--KDVSSWTSLLNGFIKCNDIEAARRIFDEMP---MRNSVSWTAMITGYVQGEVPIPGL 471
Query: 250 KFFDKMVEECEVLPDI 265
+ F +M E + P +
Sbjct: 472 ELFQEMRAEGKDWPTV 487
>gi|356557876|ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial-like [Glycine max]
Length = 912
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 94/306 (30%), Positives = 148/306 (48%), Gaps = 35/306 (11%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
L+ C L+ G QLH + K GF + ++ T + Y + G + + F+ + +
Sbjct: 539 LVSACGRLNAIGDGWQLHGMVVKKGFDCYNFIQTTIIHFYAACGMMDLACLQFEVGAKDH 598
Query: 90 LVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALALFRRMAA 128
L +WN +++G +K W+ +I GY++ ++S AL LF +M A
Sbjct: 599 LESWNALVSGFIKNRMVDQARKIFDDMPERDVFSWSTMISGYAQTDQSRIALELFHKMVA 658
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
+P+E+T+++V AI G ++ + H Y D ++ LID YAKCG I
Sbjct: 659 -SGIKPNEVTMVSVFSAIATLGTLKEGRWAHEYICNESIPLND-NLRAALIDMYAKCGSI 716
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG--- 245
SA + F ++ W II G A HG ++ F MQ+ +KPN IG
Sbjct: 717 NSALQFFNQIRDKTFSVSPWNAIICGLASHGHASMCLDVFSDMQRYNIKPNPITFIGVLS 776
Query: 246 --------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITN 297
E G + F M V PDIKHYGC++D+L RAG LE+AEE+ +P + +
Sbjct: 777 ACCHAGLVEPGRRIFRIMKSAYNVEPDIKHYGCMVDLLGRAGLLEEAEEMIRSMPMK-AD 835
Query: 298 VVVWRT 303
+V+W T
Sbjct: 836 IVIWGT 841
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 113/236 (47%), Gaps = 28/236 (11%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G QLH++ K+G S+ ++ +L +MY G +KD+ LFD P N ++ N+++ G K
Sbjct: 288 GRQLHSLVLKLGLHSNTFIQNSLINMYAKRGSIKDAQLLFDACPTLNPISCNIMVCGYAK 347
Query: 103 ---------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
+T +I G + EAL +F+ M + + P+++T++
Sbjct: 348 AGQLDNARKLFDIMPDKGCVSYTTMIMGLVQNECFREALEVFKDMRS-DGVVPNDLTLVN 406
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
V+ A GE+ NC++IH K + VS L+ Y C + A +LF+ +
Sbjct: 407 VIYACSHFGEILNCRMIHAIAIKLFVEGL-VLVSTNLMRAYCLCSGVGEARRLFD--RMP 463
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVE 257
NLVSW +++G+A G+ A E FER+ K SW +G +++ E
Sbjct: 464 EVNLVSWNVMLNGYAKAGLVDMARELFERVPD---KDVISWGTMIDGYILMNRLHE 516
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/246 (27%), Positives = 113/246 (45%), Gaps = 56/246 (22%)
Query: 46 LHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK--- 102
+HA+ K+ + V V+T L Y + ++ +LFD +PE NLV+WNV++ G K
Sbjct: 423 IHAIAIKLFVEGLVLVSTNLMRAYCLCSGVGEARRLFDRMPEVNLVSWNVMLNGYAKAGL 482
Query: 103 ------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
W +IDGY MNR +EAL ++R M +EI ++ ++
Sbjct: 483 VDMARELFERVPDKDVISWGTMIDGYILMNRLHEALVMYRAMLRSGLAL-NEILVVNLVS 541
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG-----C------------ 187
A + + + +HG K+GF+ ++ + +I YA CG C
Sbjct: 542 ACGRLNAIGDGWQLHGMVVKKGFDCYNF-IQTTIIHFYAACGMMDLACLQFEVGAKDHLE 600
Query: 188 --------------IFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
+ A K+F+D + +++ SW+T+ISG+A + A+E F +M
Sbjct: 601 SWNALVSGFIKNRMVDQARKIFDD--MPERDVFSWSTMISGYAQTDQSRIALELFHKMVA 658
Query: 234 VGLKPN 239
G+KPN
Sbjct: 659 SGIKPN 664
>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
[Vitis vinifera]
gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 151/311 (48%), Gaps = 37/311 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D S ++ C + G +H + ++ +AL MY S G + + LF
Sbjct: 222 DEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLF 281
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
+++ +NLV ++TG LV W+ +I GY+ + EAL
Sbjct: 282 EKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALN 341
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M + +P ++T+L+V+ A G + + IH + +K GF + ++N LI+
Sbjct: 342 LFNEMQSLG-IKPDQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGG-ALPINNALIEM 399
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG + A ++F+ + RKN++SWT +IS FAMHG A+ F +M+ ++PN
Sbjct: 400 YAKCGSLERARRIFD--KMPRKNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGI 457
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+G EEG K F M+ E + P HYGC++D+ RA L +A E+
Sbjct: 458 TFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEA 517
Query: 291 IPSQITNVVVW 301
+P NV++W
Sbjct: 518 MP-LAPNVIIW 527
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 144/319 (45%), Gaps = 55/319 (17%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D F++ L++ + G ++H + +K+GF S +V T L MY + G + ++ +F
Sbjct: 121 DRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMF 180
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++ R++VTW++ +IDGY + N+AL LF M EP E+ + V
Sbjct: 181 DKMFHRDVVTWSI----------MIDGYCQSGLFNDALLLFEEMKNYN-VEPDEMMLSTV 229
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS--- 199
L A + G + ++IH + + D H+ + L+ YA CG + A LFE +
Sbjct: 230 LSACGRAGNLSYGKMIHDFIMENNI-VVDPHLQSALVTMYASCGSMDLALNLFEKMTPKN 288
Query: 200 --------------------------VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
+ +K+LV W+ +ISG+A +EA+ F MQ
Sbjct: 289 LVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQS 348
Query: 234 VGLKPNR----SWRIGEEGLKFFDKMVEECEVLPDIKHYG-------CLIDILERAGRLE 282
+G+KP++ S L D+ + + D +G LI++ + G LE
Sbjct: 349 LGIKPDQVTMLSVITACAHLGALDQ-AKWIHLFVDKNGFGGALPINNALIEMYAKCGSLE 407
Query: 283 QAEEVASGIPSQITNVVVW 301
+A + +P + NV+ W
Sbjct: 408 RARRIFDKMPRK--NVISW 424
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 89/198 (44%), Gaps = 14/198 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T +I C L + +H K GF + +N AL +MY G L+ + ++F
Sbjct: 354 DQVTMLSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIF 413
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++P +N+++ WT +I ++ + AL F +M E EP+ IT + V
Sbjct: 414 DKMPRKNVIS----------WTCMISAFAMHGDAGSALRFFHQMED-ENIEPNGITFVGV 462
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS-NCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G V + I Y N HV C++D + + + A +L E +
Sbjct: 463 LYACSHAGLVEEGRKIF-YSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPL- 520
Query: 202 RKNLVSWTTIISGFAMHG 219
N++ W ++++ +HG
Sbjct: 521 APNVIIWGSLMAACRVHG 538
>gi|115448475|ref|NP_001048017.1| Os02g0730900 [Oryza sativa Japonica Group]
gi|46390470|dbj|BAD15931.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|46390866|dbj|BAD16370.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537548|dbj|BAF09931.1| Os02g0730900 [Oryza sativa Japonica Group]
gi|125541007|gb|EAY87402.1| hypothetical protein OsI_08809 [Oryza sativa Indica Group]
gi|125583571|gb|EAZ24502.1| hypothetical protein OsJ_08263 [Oryza sativa Japonica Group]
Length = 488
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 150/294 (51%), Gaps = 40/294 (13%)
Query: 45 QLHAVFSKVGFQ---SHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV 101
Q+HA+ K G S VY +T+L +Y LG L D+ K+FD +P + +V+WNV++ G+V
Sbjct: 83 QIHALLVKSGDPPSVSGVYASTSLVRVYARLGRLGDARKMFDGMPVKTVVSWNVLLDGIV 142
Query: 102 K---------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+ W +I G+ R EA+ LF M P E T++
Sbjct: 143 RASDLDAAWEVFVEMPERNVVSWNTVIAGFVRHGWVQEAVDLFAEMTVVYGLAPDEATMV 202
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+ A+ G + + HGY +R F+ D + LI+ Y +CG + A + F +SV
Sbjct: 203 GFVSAVRDMGVLGIGRCAHGYVIRREFS-LDGALGVALINMYTRCGSMGDAFRCF--SSV 259
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGL 249
KN+ WT++I GFA HG + A+ F M+++G++PN + EG
Sbjct: 260 ASKNVEQWTSVIGGFAAHGHPEMALRLFTEMRQLGIEPNGVTFLAVLNACSHGGLVNEGF 319
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
K+F+ M + ++HYGCLID+L RAG LE+A E+AS +P +V+W +
Sbjct: 320 KYFNLM-RSMGIKSTMQHYGCLIDLLGRAGFLEEAFELASSLPED-PGLVIWSS 371
>gi|15232821|ref|NP_190337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206890|sp|Q9SN85.1|PP267_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g47530
gi|6522536|emb|CAB61979.1| putative protein [Arabidopsis thaliana]
gi|62320272|dbj|BAD94558.1| hypothetical protein [Arabidopsis thaliana]
gi|332644772|gb|AEE78293.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 591
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 162/319 (50%), Gaps = 39/319 (12%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
F +++ L++ +S P PL SF I++ L G Q+H GF S
Sbjct: 97 FRLFRSLRR---NSSLPANPLSSSFALKCCIKSGDLLG----GLQIHGKIFSDGFLSDSL 149
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
+ T L D+Y + D+ K+FDE+P+R+ V+WNV+ + Y R R+ + L
Sbjct: 150 LMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSC----------YLRNKRTRDVL 199
Query: 121 ALFRRMA----ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN 176
LF +M C +P +T L L A G + + +H + ++ G + +++SN
Sbjct: 200 VLFDKMKNDVDGC--VKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGA-LNLSN 256
Query: 177 CLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
L+ Y++CG + A ++F + +N+VSWT +ISG AM+G GKEA+E F M K G+
Sbjct: 257 TLVSMYSRCGSMDKAYQVF--YGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGI 314
Query: 237 KPNRSWRIG-----------EEGLKFFDKMVE-ECEVLPDIKHYGCLIDILERAGRLEQA 284
P G EG+ FFD+M E ++ P++ HYGC++D+L RA L++A
Sbjct: 315 SPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKA 374
Query: 285 EEVASGIPSQITNVVVWRT 303
+ + + + +WRT
Sbjct: 375 YSLIKSMEMK-PDSTIWRT 392
>gi|296090287|emb|CBI40106.3| unnamed protein product [Vitis vinifera]
Length = 590
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 138/281 (49%), Gaps = 24/281 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D F + ++ C T G +LH K+ S ++ + MY L ++++ K F
Sbjct: 201 DRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPFIGNVIITMYSELNLIQEAEKAF 260
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ E+++++WN +I S + + L +F+ M P + T +
Sbjct: 261 RLIEEKDVISWNTLIAAC----------SHCDDHAKGLRVFKHMTEETNVRPDDFTFTSA 310
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + + + IH + + D+ V N L++ YAKCGCI A +F + +
Sbjct: 311 LAACAGLASMSHGKQIHAHLMRTRLYQ-DLGVGNALVNMYAKCGCIGYAYDIF--SKMVH 367
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
NLVSW TII+GF HG+G+ AVE FE+M G++P+ IG ++G +
Sbjct: 368 HNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNHAGLVDKGQLY 427
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
F+ M E + PDI+H+ CLID+L RAGRL +AEE P
Sbjct: 428 FNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFP 468
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 105/224 (46%), Gaps = 17/224 (7%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T S L+ C G LHA K G QS V+++ + +MY G + ++FDE+
Sbjct: 5 TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEM 64
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
E+NLV+W+ +I+ GY + A+ L+ +M + P+E +V+ A
Sbjct: 65 FEKNLVSWSAMIS----------GYDQAGEPQMAIDLYSQM----FLVPNEYVFASVISA 110
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
V Q IH K G+ + VSN LI Y KC A +F +T N
Sbjct: 111 CASLSAVTLGQKIHSRSLKFGYESISF-VSNSLISMYMKCNQCSDALSVFTNTP--EPNC 167
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGL 249
VS+ +I+GF + + +E F+ M++ GL P+R +G G+
Sbjct: 168 VSYNALITGFVENQQLERGLEFFKLMRQQGLIPDRFAFMGVLGI 211
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/256 (23%), Positives = 108/256 (42%), Gaps = 38/256 (14%)
Query: 9 QIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDM 68
Q+ I +S + + + + ++ +I C +LS LG ++H+ K G++S +V+ +L M
Sbjct: 86 QMAIDLYSQMFLVPNEYVFASVISACASLSAVTLGQKIHSRSLKFGYESISFVSNSLISM 145
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y+ D+ +F PE N V++N +ITG V+ ++ R E L R+
Sbjct: 146 YMKCNQCSDALSVFTNTPEPNCVSYNALITGFVE-------NQQLERGLEFFKLMRQQGL 198
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
P + VL ++ +H K ++ + N +I Y++ I
Sbjct: 199 I----PDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLDSTPF-IGNVIITMYSELNLI 253
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEG 248
A K F ++ K+++SW T+I+ A + + K G
Sbjct: 254 QEAEKAFR--LIEEKDVISWNTLIA----------ACSHCDDHAK--------------G 287
Query: 249 LKFFDKMVEECEVLPD 264
L+ F M EE V PD
Sbjct: 288 LRVFKHMTEETNVRPD 303
>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
Length = 986
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 147/275 (53%), Gaps = 26/275 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S T++ ++ C + LG +H + K G +S ++V+ AL M+V+ G L + LF
Sbjct: 513 NSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLF 572
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+++P+R+LV+WN II G V+ + N+ + +M +P +IT +
Sbjct: 573 NDMPKRDLVSWNTIIAGFVQ-----------HGKNQVAFDYFKMMQESGIKPDKITFTGL 621
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + + +H + F+ D+ V LI Y KCG I A ++F + +
Sbjct: 622 LNACASPEALTEGRRLHALITEAAFDC-DVLVGTGLISMYTKCGSIEDAHQVFH--KLPK 678
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN+ SWT++I+G+A HG GKEA+E F +MQ+ G+KP+ +G EEGL
Sbjct: 679 KNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHH 738
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
F M +E + P ++HYGC++D+ RAG L +A E
Sbjct: 739 FQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVE 772
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 146/290 (50%), Gaps = 28/290 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ ++ C + G +L+ + K G+ + ++V TAL +M++ G + D++K+F
Sbjct: 210 DKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVF 269
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D LP R+LVTW +ITGL +R R +A LF+RM E +P ++ +++
Sbjct: 270 DNLPTRDLVTWTSMITGL----------ARHGRFKQACNLFQRMEE-EGVQPDKVAFVSL 318
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + + +H ++ G++ +I+V ++ Y KCG + A ++F+ V
Sbjct: 319 LRACNHPEALEQGKKVHARMKEVGWDT-EIYVGTAILSMYTKCGSMEDALEVFD--LVKG 375
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKF 251
+N+VSWT +I+GFA HG EA F +M + G++PNR S + G +
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQI 435
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
D ++ E D + L+ + + G L+ A V I Q NVV W
Sbjct: 436 QDHII-EAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQ--NVVAW 482
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 142/292 (48%), Gaps = 34/292 (11%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T+ ++ C + S G Q+ + G+ S V TAL MY G LKD+ ++F+++
Sbjct: 415 TFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKI 474
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
++N+V WN +IT Y + + + ALA F+ + E +P+ T ++L
Sbjct: 475 SKQNVVAWNAMIT----------AYVQHEQYDNALATFQALLK-EGIKPNSSTFTSILNV 523
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
+ + + +H K G + D+HVSN L+ + CG + SA LF D + +++L
Sbjct: 524 CKSSDSLELGKWVHFLIMKAGLES-DLHVSNALVSMFVNCGDLMSAKNLFND--MPKRDL 580
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDK 254
VSW TII+GF HG + A + F+ MQ+ G+KP++ G EG +
Sbjct: 581 VSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHAL 640
Query: 255 MVE---ECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ E +C+VL LI + + G +E A +V +P + NV W +
Sbjct: 641 ITEAAFDCDVLVGTG----LISMYTKCGSIEDAHQVFHKLPKK--NVYSWTS 686
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 146/289 (50%), Gaps = 32/289 (11%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
TYS L++ C+ G +++ K G Q +++ L +MY G + ++FD++
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDM 171
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
E+++ +WN+++ G V+ G+ + EA L +M + +P + T +++L A
Sbjct: 172 REKDVYSWNLLLGGYVQ-HGLYE---------EAFKLHEQMVQ-DSVKPDKRTFVSMLNA 220
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
V + ++ K G++ D+ V LI+ + KCG I A+K+F++ + ++L
Sbjct: 221 CADARNVDKGRELYNLILKAGWDT-DLFVGTALINMHIKCGDIGDATKVFDN--LPTRDL 277
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDK 254
V+WT++I+G A HG K+A F+RM++ G++P++ + E+G K +
Sbjct: 278 VTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHAR 337
Query: 255 MVEECEVLPDIKHY--GCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
M EV D + Y ++ + + G +E A EV + + NVV W
Sbjct: 338 MK---EVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGR--NVVSW 381
>gi|356534169|ref|XP_003535630.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Glycine max]
Length = 595
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 147/279 (52%), Gaps = 26/279 (9%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T+ ++ C L NLG +H + K + + V A+ DMY+ + D+ K+FDE+
Sbjct: 209 TFVSILGACGKLGRLNLGKGIHGLVFKCLYGEELVVCNAVLDMYMKCDSVTDARKMFDEM 268
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
PE+++++W +I GLV+ E+L LF +M A + EP + + +VL A
Sbjct: 269 PEKDIISWTSMIGGLVQ----------CQSPRESLDLFSQMQASGF-EPDGVILTSVLSA 317
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
G + + +H Y + +D+H+ L+D YAKCGCI A ++F + KN+
Sbjct: 318 CASLGLLDCGRWVHEYIDCHRIK-WDVHIGTTLVDMYAKCGCIDMAQRIF--NGMPSKNI 374
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDK 254
+W I G A++G GKEA++ FE + + G +PN + +EG K+F++
Sbjct: 375 RTWNAYIGGLAINGYGKEALKQFEDLVESGTRPNEVTFLAVFTACCHNGLVDEGRKYFNE 434
Query: 255 MVEECEVL-PDIKHYGCLIDILERAGRLEQAEEVASGIP 292
M L P ++HYGC++D+L RAG + +A E+ +P
Sbjct: 435 MTSPLYNLSPCLEHYGCMVDLLCRAGLVGEAVELIKTMP 473
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/307 (28%), Positives = 149/307 (48%), Gaps = 41/307 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +T+ ++++C S Q H+V K G +YV L +Y G + K+F
Sbjct: 108 DVYTFPAVLKSCAKFSGIGEVRQFHSVSVKTGLWCDIYVQNTLVHVYSICGDNVGAGKVF 167
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+++ R++V+W +I+G VK TG+ NEA++LF RM EP+ T +++
Sbjct: 168 EDMLVRDVVSWTGLISGYVK-TGLF---------NEAISLFLRMN----VEPNVGTFVSI 213
Query: 143 LPAIWKNGEVRNCQLIHG------YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
L A K G + + IHG YGE ++ V N ++D Y KC + A K+F+
Sbjct: 214 LGACGKLGRLNLGKGIHGLVFKCLYGE-------ELVVCNAVLDMYMKCDSVTDARKMFD 266
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN----RSWRIGEEGLKFF 252
+ + K+++SWT++I G +E+++ F +MQ G +P+ S L
Sbjct: 267 E--MPEKDIISWTSMIGGLVQCQSPRESLDLFSQMQASGFEPDGVILTSVLSACASLGLL 324
Query: 253 D--KMVEE---CEVLPDIKHYG-CLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFL 306
D + V E C + H G L+D+ + G ++ A+ + +G+PS+ N+ W
Sbjct: 325 DCGRWVHEYIDCHRIKWDVHIGTTLVDMYAKCGCIDMAQRIFNGMPSK--NIRTWNAYIG 382
Query: 307 RLLINSY 313
L IN Y
Sbjct: 383 GLAINGY 389
>gi|147810325|emb|CAN65024.1| hypothetical protein VITISV_026273 [Vitis vinifera]
Length = 805
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 99/333 (29%), Positives = 161/333 (48%), Gaps = 52/333 (15%)
Query: 1 FLVYKQLQQIYIHSHSPLPP------------LFDSFTYSFLIRTCVTLSYPN--LGTQL 46
+Y + + Y+ SHSP L +++T+ LI+ C TL + +G +
Sbjct: 349 IFMYNSMIRGYVLSHSPTRAILCYLDMLNYGLLANNYTFPPLIKACTTLGSSSKLIGCLV 408
Query: 47 HAVFSKVGFQSHVYVNTALGDMYVSLGF-LKDSSKLFDELPERNLVTWNVIITG------ 99
HA GF +V +AL + Y SL F + + LFD +P R++V W +I G
Sbjct: 409 HAHVVTFGFDEDPFVVSALIEFY-SLNFDMGTARTLFDRIPNRDVVLWTAMIDGYGKMGD 467
Query: 100 ---------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ W+ ++ YSR+ E L LFRRM T P+E +++VL
Sbjct: 468 VEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLFRRMQEAG-TMPNESVLVSVLT 526
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A G + +H Y ++ F++ I ++ L+D Y+KCGC+ SA F+ + K+
Sbjct: 527 ACAHLGALAQGLWVHSYAKQCNFDSNPI-LATALVDMYSKCGCVESALSTFQ--GIPNKD 583
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS-----------WRIGEEGLKFFD 253
+W +ISG AM+G +++E F +M G +P + R+ EGLK F+
Sbjct: 584 AGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVLTACTHARLVREGLKLFE 643
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
+M V P +HY CL+D++ RAG L +AE+
Sbjct: 644 QMSSNYGVEPQXEHYACLVDLMARAGMLAEAEK 676
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 14/135 (10%)
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
D+ + +ID Y K G + A LFED + +N +SW+ +++ ++ G KE + F R
Sbjct: 451 DVVLWTAMIDGYGKMGDVEHARILFED--MPERNAISWSAVMAAYSRVGDFKEVLCLFRR 508
Query: 231 MQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
MQ+ G PN S + +GL + ++C + L+D+ + G
Sbjct: 509 MQEAGTMPNESVLVSVLTACAHLGALAQGL-WVHSYAKQCNFDSNPILATALVDMYSKCG 567
Query: 280 RLEQAEEVASGIPSQ 294
+E A GIP++
Sbjct: 568 CVESALSTFQGIPNK 582
>gi|297740165|emb|CBI30347.3| unnamed protein product [Vitis vinifera]
Length = 560
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 147/316 (46%), Gaps = 46/316 (14%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FTY LI+ C + G H + G V+V T+L D+Y G + + K+F
Sbjct: 170 DKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVF 229
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
DE+ ERN+V+W +I G V W II GY + A
Sbjct: 230 DEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARK 289
Query: 122 LFRRMA------------ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNA 169
+F M +P E +++++ A + G + + + Y K +
Sbjct: 290 MFDEMPHRNRDVVAWSALISGNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDV 349
Query: 170 FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFE 229
HV LID AKCG + A+KLFE+ + +++L+S+ +++ G ++HG G +AV F
Sbjct: 350 HRAHVIAALIDMNAKCGSMDRATKLFEE--MPKRDLISYCSMMQGLSIHGCGPQAVSLFS 407
Query: 230 RMQKVGLKPN---------RSWRIG--EEGLKFFDKMVEECEVLPDIKHYGCLIDILERA 278
RM GL P+ R G +EG +F+ M + ++P HY C++D+L RA
Sbjct: 408 RMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRA 467
Query: 279 GRLEQAEEVASGIPSQ 294
GRL++A E+ +P +
Sbjct: 468 GRLKEAYELLKSMPVE 483
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 121/287 (42%), Gaps = 49/287 (17%)
Query: 18 LPPL--FDSFT-YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF 74
LP L FD+ + S L++ C T S Q+HA + G ++ + + SL
Sbjct: 64 LPTLRSFDTTSSISTLLKACTTTSTLE---QVHARIIRKGLHQDHFIISQFLTLCNSLSN 120
Query: 75 LKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134
++ +F+ + + V WN I GYS + ++LF RM + P
Sbjct: 121 FSYTTSVFNGVSSPSTVLWNTY----------IKGYSENYSVSLTVSLFIRMKRSDAV-P 169
Query: 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
+ T +++ A K V+ HG + G D+ V LID Y KCG I A K+
Sbjct: 170 DKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGG-DVFVMTSLIDLYGKCGEILCARKV 228
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDK 254
F++ + +N+VSWT +I+G+A +F + E K FD+
Sbjct: 229 FDE--MGERNVVSWTAMIAGYA----------SFSDLV--------------EARKLFDE 262
Query: 255 MVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
M E+ V + +I + G L A ++ +P + +VV W
Sbjct: 263 MPEKNAV-----SWNAIISGYVKCGDLRSARKMFDEMPHRNRDVVAW 304
>gi|297739912|emb|CBI30094.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 132/244 (54%), Gaps = 33/244 (13%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYS 111
G L ++ LF+ +PER+L +WN +ITGL++ WT +I G
Sbjct: 232 GLLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCV 291
Query: 112 RMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD 171
+ S EAL +F RM + +P++ T ++VL A + Q +H K +
Sbjct: 292 QEGESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDST 351
Query: 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
VS LI+ Y+KCG + +A K+F+D +++LVSW II+ +A HG GKEA+ F+ M
Sbjct: 352 FVVS-ALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEM 410
Query: 232 QKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGR 280
+K G KP+ +G EEGLK+FD++V++ +L HY CL+D+ RAGR
Sbjct: 411 RKSGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGR 470
Query: 281 LEQA 284
L++A
Sbjct: 471 LKEA 474
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/243 (27%), Positives = 113/243 (46%), Gaps = 38/243 (15%)
Query: 21 LFDSFTYSFLIR-TCVTLSYPNLGT--QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD 77
LFD +I T V Y G + +F +V + +V TA+ Y+ + D
Sbjct: 89 LFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISD 148
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
+ KLF+E+P +N+V+WN +IDGY++ R + A+ LF +M E S
Sbjct: 149 AEKLFNEMPNKNVVSWNT----------MIDGYAQNGRIDSAMYLFEKMP--ERNVVSWN 196
Query: 138 TILAVLPAIWKNGEVRN-------------CQLIHGYGEKRGFNAF------DIHVSNCL 178
T++++L + E R +I G ++ + F D+ N +
Sbjct: 197 TVMSMLAQCGRIEEARRLFDRMPERDVISWTAMIAGLLDE-ALDLFERMPERDLPSWNTM 255
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLK 237
I + G + A KLF + + +KN++SWTT+I+G G +EA++ F RM G K
Sbjct: 256 ITGLIQNGDLRRARKLFNE--MPKKNVISWTTMITGCVQEGESEEALKIFSRMLSTNGAK 313
Query: 238 PNR 240
PN+
Sbjct: 314 PNQ 316
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 119/239 (49%), Gaps = 42/239 (17%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT 132
G + ++ +LFDE+ E +++TW +I+G +K G+I+ EA LF R+ A
Sbjct: 81 GRIMEARRLFDEMREPDVITWTTVISGYIK-CGMIE---------EARRLFDRVDA---- 126
Query: 133 EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSAS 192
+ + +T A++ ++ ++ + + + + ++ N +ID YA+ G I SA
Sbjct: 127 KKNVVTWTAMVGGYIRSNKISDAEKLFNEMPNKNVVSW-----NTMIDGYAQNGRIDSAM 181
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---SWR-----I 244
LFE + +N+VSW T++S A G +EA F+RM P R SW +
Sbjct: 182 YLFE--KMPERNVVSWNTVMSMLAQCGRIEEARRLFDRM------PERDVISWTAMIAGL 233
Query: 245 GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+E L F++M E D+ + +I L + G L +A ++ + +P + NV+ W T
Sbjct: 234 LDEALDLFERMPER-----DLPSWNTMITGLIQNGDLRRARKLFNEMPKK--NVISWTT 285
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 39/219 (17%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE- 84
T+ ++ C L+ G Q+H + SK +Q +V +AL +MY G L + K+FD+
Sbjct: 318 TFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDG 377
Query: 85 -LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
+R+LV+WN GII Y+ EA+ F+ M + +P ++T + +L
Sbjct: 378 MTSQRDLVSWN----------GIIAAYAHHGYGKEAINFFKEMRKSGF-KPDDVTYVGLL 426
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN-----------CLIDTYAKCGCIFSAS 192
A G V + G FD V + CL+D + G + A
Sbjct: 427 SACSHAGLV-----------EEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAF 475
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENF 228
E V W +++G +H +GK+A +
Sbjct: 476 GFIERLETKPSARV-WGALLAGCNVHANVKIGKQAAKKL 513
>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 986
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 147/275 (53%), Gaps = 26/275 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S T++ ++ C + LG +H + K G +S ++V+ AL M+V+ G L + LF
Sbjct: 513 NSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLF 572
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+++P+R+LV+WN II G V+ + N+ + +M +P +IT +
Sbjct: 573 NDMPKRDLVSWNTIIAGFVQ-----------HGKNQVAFDYFKMMQESGIKPDKITFTGL 621
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + + +H + F+ D+ V LI Y KCG I A ++F + +
Sbjct: 622 LNACASPEALTEGRRLHALITEAAFDC-DVLVGTGLISMYTKCGSIEDAHQVFH--KLPK 678
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN+ SWT++I+G+A HG GKEA+E F +MQ+ G+KP+ +G EEGL
Sbjct: 679 KNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHH 738
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
F M +E + P ++HYGC++D+ RAG L +A E
Sbjct: 739 FQSM-KEFNIEPRMEHYGCMVDLFGRAGLLNEAVE 772
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 146/290 (50%), Gaps = 28/290 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ ++ C + G +L+ + K G+ + ++V TAL +M++ G + D++K+F
Sbjct: 210 DKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVF 269
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D LP R+LVTW +ITGL +R R +A LF+RM E +P ++ +++
Sbjct: 270 DNLPTRDLVTWTSMITGL----------ARHGRFKQACNLFQRMEE-EGVQPDKVAFVSL 318
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + + +H ++ G++ +I+V ++ Y KCG + A ++F+ V
Sbjct: 319 LRACNHPEALEQGKKVHARMKEVGWDT-EIYVGTAILSMYTKCGSMEDALEVFD--LVKG 375
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKF 251
+N+VSWT +I+GFA HG EA F +M + G++PNR S + G +
Sbjct: 376 RNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQI 435
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
D ++ E D + L+ + + G L+ A V I Q NVV W
Sbjct: 436 QDHII-EAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQ--NVVAW 482
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 142/292 (48%), Gaps = 34/292 (11%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T+ ++ C + S G Q+ + G+ S V TAL MY G LKD+ ++F+++
Sbjct: 415 TFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKI 474
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
++N+V WN +IT Y + + + ALA F+ + E +P+ T ++L
Sbjct: 475 SKQNVVAWNAMIT----------AYVQHEQYDNALATFQALLK-EGIKPNSSTFTSILNV 523
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
+ + + +H K G + D+HVSN L+ + CG + SA LF D + +++L
Sbjct: 524 CKSSDSLELGKWVHFLIMKAGLES-DLHVSNALVSMFVNCGDLMSAKNLFND--MPKRDL 580
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDK 254
VSW TII+GF HG + A + F+ MQ+ G+KP++ G EG +
Sbjct: 581 VSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRLHAL 640
Query: 255 MVE---ECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ E +C+VL LI + + G +E A +V +P + NV W +
Sbjct: 641 ITEAAFDCDVLVGTG----LISMYTKCGSIEDAHQVFHKLPKK--NVYSWTS 686
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 143/289 (49%), Gaps = 32/289 (11%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
TYS L++ C+ G +++ K G Q +++ L +MY G + ++FD++
Sbjct: 112 TYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDM 171
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
E+++ +WN+ ++ GY + EA L +M + +P + T +++L A
Sbjct: 172 REKDVYSWNL----------LLGGYVQHGLYEEAFKLHEQMVQ-DSVKPDKRTFVSMLNA 220
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
V + ++ K G++ D+ V LI+ + KCG I A+K+F++ + ++L
Sbjct: 221 CADARNVDKGRELYNLILKAGWDT-DLFVGTALINMHIKCGDIGDATKVFDN--LPTRDL 277
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDK 254
V+WT++I+G A HG K+A F+RM++ G++P++ + E+G K +
Sbjct: 278 VTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGKKVHAR 337
Query: 255 MVEECEVLPDIKHY--GCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
M EV D + Y ++ + + G +E A EV + + NVV W
Sbjct: 338 MK---EVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGR--NVVSW 381
>gi|15240591|ref|NP_196831.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g13270, chloroplastic; Flags: Precursor
gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis thaliana]
gi|332004490|gb|AED91873.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 752
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 143/282 (50%), Gaps = 24/282 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
+DSF +S +++ C +L NLG Q+HA +K+G +S V V T L D Y+ + + +
Sbjct: 283 WDSFVFSVVLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRA 342
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F E+ E N V+W+ II+ GY +M++ EA+ F+ + + + + T +
Sbjct: 343 FQEIREPNDVSWSAIIS----------GYCQMSQFEEAVKTFKSLRSKNASILNSFTYTS 392
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+ A + +H KR + + LI Y+KCGC+ A+++FE S+D
Sbjct: 393 IFQACSVLADCNIGGQVHADAIKRSLIGSQ-YGESALITMYSKCGCLDDANEVFE--SMD 449
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
++V+WT ISG A +G EA+ FE+M G+KPN I E+G
Sbjct: 450 NPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKH 509
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
D M+ + V P I HY C+IDI R+G L++A + +P
Sbjct: 510 CLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALKFMKNMP 551
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 133/307 (43%), Gaps = 47/307 (15%)
Query: 19 PPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
PP S Y+ L+++ V + G Q+HA + G S+ + T + +MYV G+L +
Sbjct: 182 PP---SSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGA 238
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
++FD++ + V TG++ GY++ R+ +AL LF + E E
Sbjct: 239 KRVFDQMA----------VKKPVACTGLMVGYTQAGRARDALKLFVDLVT-EGVEWDSFV 287
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
VL A E+ + IH K G + ++ V L+D Y KC SA + F++
Sbjct: 288 FSVVLKACASLEELNLGKQIHACVAKLGLES-EVSVGTPLVDFYIKCSSFESACRAFQE- 345
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEE 258
+ N VSW+ IISG+ +EAV+ F+ ++ S+ + + +
Sbjct: 346 -IREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFT--------YTSIFQA 396
Query: 259 CEVLPDIK-----------------HYG--CLIDILERAGRLEQAEEVASGIPSQITNVV 299
C VL D YG LI + + G L+ A EV + + ++V
Sbjct: 397 CSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDN--PDIV 454
Query: 300 VWRTGFL 306
W T F+
Sbjct: 455 AW-TAFI 460
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 99/203 (48%), Gaps = 22/203 (10%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
+ +SFTY+ + + C L+ N+G Q+HA K Y +AL MY G L D+++
Sbjct: 384 ILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANE 443
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F+ + ++V WT I G++ ++EAL LF +M +C +P+ +T +
Sbjct: 444 VFESMDNPDIVA----------WTAFISGHAYYGNASEALRLFEKMVSCG-MKPNSVTFI 492
Query: 141 AVLPAIWKNGEV---RNC--QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
AVL A G V ++C ++ Y + +D C+ID YA+ G + A K
Sbjct: 493 AVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYD-----CMIDIYARSGLLDEALKFM 547
Query: 196 EDTSVDRKNLVSWTTIISGFAMH 218
++ + + +SW +SG H
Sbjct: 548 KNMPFE-PDAMSWKCFLSGCWTH 569
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 24/210 (11%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSSKLF 82
S++Y L C L + G LH ++G ++ V + + MY L+D+ KLF
Sbjct: 83 SYSYQCLFEACRELRSLSHGRLLHDRM-RMGIENPSVLLQNCVLQMYCECRSLEDADKLF 141
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI--TIL 140
DE+ E N V+ +I+ + GI+D +A+ LF M A PS + T+L
Sbjct: 142 DEMSELNAVSRTTMISAYAE-QGILD---------KAVGLFSGMLASGDKPPSSMYTTLL 191
Query: 141 AVL--PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
L P G + IH + + G + + + +++ Y KCG + A ++F+
Sbjct: 192 KSLVNPRALDFG-----RQIHAHVIRAGLCS-NTSIETGIVNMYVKCGWLVGAKRVFDQM 245
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENF 228
+V K V+ T ++ G+ G ++A++ F
Sbjct: 246 AV--KKPVACTGLMVGYTQAGRARDALKLF 273
>gi|297823163|ref|XP_002879464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325303|gb|EFH55723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 713
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 140/273 (51%), Gaps = 25/273 (9%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
+T ++ C + Y G QLH+ K+GF+ H++ TAL DMY G L D+ K FD
Sbjct: 312 YTIVGVLNACSDICYLVEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDC 371
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
L ER++ WT +I GY + + + EAL L+RRM P++ T+ +VL
Sbjct: 372 LQERDVAL----------WTSLISGYVQNSDNEEALILYRRMKTAGII-PNDPTMASVLK 420
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A + + +HG+ K GF ++ + + L Y KCG + + +F T K+
Sbjct: 421 ACSSLATLELGKQVHGHTIKHGF-GLEVPIGSALSTMYTKCGSLEDGNLVFRRTP--NKD 477
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFD 253
+VSW +ISG + +G G EA+E FE M G +P+ + E G +F
Sbjct: 478 VVSWNAMISGLSHNGQGDEALELFEEMLAEGTEPDDVTFVNIISACSHKGFVERGWSYFH 537
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
M ++ + P + HY C++D+L RAG+L++ +E
Sbjct: 538 MMSDQFGLDPKVDHYACMVDVLSRAGQLKETKE 570
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 110/215 (51%), Gaps = 14/215 (6%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
+ ++ ++ + Y LG Q+H + K G V ++ AL MY L ++ K+FD
Sbjct: 211 YVFTAVLSSLAATVYVGLGRQIHGITVKNGLLGFVALSNALVTMYSKCESLNEACKMFDS 270
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+RN +TW+ ++T GYS+ S EA+ LF RM + +PSE TI+ VL
Sbjct: 271 SGDRNSITWSAMVT----------GYSQNGESLEAIKLFSRMFSAG-IKPSEYTIVGVLN 319
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A + + +H + K GF + + L+D YAK GC+ A K F+ + ++
Sbjct: 320 ACSDICYLVEGKQLHSFLLKLGFERH-LFATTALVDMYAKAGCLADARKGFD--CLQERD 376
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+ WT++ISG+ + +EA+ + RM+ G+ PN
Sbjct: 377 VALWTSLISGYVQNSDNEEALILYRRMKTAGIIPN 411
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 116/243 (47%), Gaps = 22/243 (9%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
++Y++++ I + P T + +++ C +L+ LG Q+H K GF V
Sbjct: 397 LILYRRMKTAGIIPNDP--------TMASVLKACSSLATLELGKQVHGHTIKHGFGLEVP 448
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
+ +AL MY G L+D + +F P +++V+WN +I+GL S + +EAL
Sbjct: 449 IGSALSTMYTKCGSLEDGNLVFRRTPNKDVVSWNAMISGL----------SHNGQGDEAL 498
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLI 179
LF M A E TEP ++T + ++ A G V R H ++ G + H + C++
Sbjct: 499 ELFEEMLA-EGTEPDDVTFVNIISACSHKGFVERGWSYFHMMSDQFGLDPKVDHYA-CMV 556
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D ++ G + + E S+D L W ++S HG + V E++ +G + +
Sbjct: 557 DVLSRAGQLKETKEFIESASIDH-GLCLWRILLSACKNHGNCELGVYAGEKLMSLGSRES 615
Query: 240 RSW 242
++
Sbjct: 616 STY 618
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 100/225 (44%), Gaps = 25/225 (11%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L +++T + + + +L +G Q HA+ K+ +YV+T+L MY G
Sbjct: 117 LPNAYTLAGIFKAESSLQSCTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAG------- 169
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
L +V + W R + L + E S+
Sbjct: 170 ----LKYLYMVYYGF-------WLCYKKDVLRRQLKSSICFLEEK----EKESDSDYVFT 214
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
AVL ++ V + IHG K G F + +SN L+ Y+KC + A K+F D+S
Sbjct: 215 AVLSSLAATVYVGLGRQIHGITVKNGLLGF-VALSNALVTMYSKCESLNEACKMF-DSSG 272
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG 245
DR N ++W+ +++G++ +G EA++ F RM G+KP+ +G
Sbjct: 273 DR-NSITWSAMVTGYSQNGESLEAIKLFSRMFSAGIKPSEYTIVG 316
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 19/186 (10%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
+Y Q I+ S L + T+ R V G +HA + G +
Sbjct: 1 MYPSTFQTEINPFSHTSTLLKALTHHSQHRNLVA------GRAVHAQIIRTGTSTCTQHA 54
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
L + Y G L + +F+ + +++V+WN +ITG + GI + S+ + L
Sbjct: 55 NVLVNFYAKCGQLAKAHSIFNAIICKDVVSWNSLITGYSQNGGI-------SSSHTVMQL 107
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQL-IHGYGEKRGFNAF-DIHVSNCLID 180
FR M A + P+ T+ + A +++C + + ++F DI+V L+
Sbjct: 108 FREMRAQDIL-PNAYTLAGIFKA---ESSLQSCTVGRQAHALVVKMSSFGDIYVDTSLVG 163
Query: 181 TYAKCG 186
Y K G
Sbjct: 164 MYCKAG 169
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 142 VLPAIWKNGEVRNC---QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+L A+ + + RN + +H + G + H +N L++ YAKCG + A +F
Sbjct: 19 LLKALTHHSQHRNLVAGRAVHAQIIRTGTSTCTQH-ANVLVNFYAKCGQLAKAHSIF--N 75
Query: 199 SVDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKPN 239
++ K++VSW ++I+G++ +G ++ F M+ + PN
Sbjct: 76 AIICKDVVSWNSLITGYSQNGGISSSHTVMQLFREMRAQDILPN 119
>gi|225433758|ref|XP_002267783.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Vitis vinifera]
Length = 636
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 143/248 (57%), Gaps = 28/248 (11%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y+ LG ++D+ +F E+PER+ V+WN +I G V+ I Y+R ALALFR M
Sbjct: 332 YIRLGKIEDAKVVFQEMPERDAVSWNSMIAGYVQ----IKDYAR------ALALFREMEI 381
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
E ++IT+++VL A + G + + IH ++R + + ++SN L+D YAKCG +
Sbjct: 382 AN-VEATDITLISVLGACAETGALEIGRKIHLSLKQREYK-IEGYLSNALVDMYAKCGHL 439
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV--GLKPNRSWRIG- 245
A ++F + + K++ W +I A+HG +EA+ F M+ G +PNR IG
Sbjct: 440 NLAWEVFSELKM--KHISCWNAMIVSLAVHGYCEEALRLFSTMEMSVDGARPNRVTFIGV 497
Query: 246 ----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQI 295
+EG FF++MV E +++PDIKHYGC++D+L R G L++A + +P +
Sbjct: 498 LIACSHKGLVDEGRTFFNRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEAHHMIKTMPFE- 556
Query: 296 TNVVVWRT 303
N V+WRT
Sbjct: 557 ANSVLWRT 564
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 20/207 (9%)
Query: 33 TCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVT 92
C +G ++H + ++ Y++ AL DMY G L + ++F EL +++
Sbjct: 397 ACAETGALEIGRKIHLSLKQREYKIEGYLSNALVDMYAKCGHLNLAWEVFSELKMKHISC 456
Query: 93 WNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA-ACEYTEPSEITILAVLPAIWKNGE 151
WN +I L + GY EAL LF M + + P+ +T + VL A G
Sbjct: 457 WNAMIVSLA-----VHGY-----CEEALRLFSTMEMSVDGARPNRVTFIGVLIACSHKGL 506
Query: 152 VRNCQLIHGYGEKRGFNAF----DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
V + R N + DI C++D ++CG + A + + + N V
Sbjct: 507 VDEGRTFF----NRMVNEYKIMPDIKHYGCMVDLLSRCGLLKEAHHMIKTMPFE-ANSVL 561
Query: 208 WTTIISGFAMHGMGKEAVENFERMQKV 234
W T++ +H A E+F+++ K+
Sbjct: 562 WRTLLGACRVHHHVDLAEESFQQLGKM 588
>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
Length = 814
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 141/289 (48%), Gaps = 44/289 (15%)
Query: 46 LHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTG 105
+H K G +++ Y+ AL DMY +G +K S ++FD + +R++V+WN IIT
Sbjct: 341 IHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIIT------- 393
Query: 106 IIDGYSRMNRSNEALALFRRMAACEYT---------------EPSEITILAVLPAIWKNG 150
Y RS++AL L M E +P+ IT++ VLP
Sbjct: 394 ---SYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLS 450
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
+ + IH Y R A + V + L+D YAKCGC+ A ++F+ + +N+++W
Sbjct: 451 ALAKGKEIHAYA-IRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPI--RNVITWNV 507
Query: 211 IISGFAMHGMGKEAVENFERMQKVG-----LKPNRSWRIG-----------EEGLKFFDK 254
II + MHG GKE++E FE M G +KP I +EGL F K
Sbjct: 508 IIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHK 567
Query: 255 MVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
M E + P HY C++D++ RAG++E+A + + +PS V W +
Sbjct: 568 MKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSS 616
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 135/306 (44%), Gaps = 42/306 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHA-VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D T++ ++ C L G ++HA + +V +AL DMY + G ++ +
Sbjct: 215 DGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLV 274
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + +R + WN +I G Y++ +AL LF M A + T+ +
Sbjct: 275 FDSVLDRKIGLWNAMIAG----------YAQSEHDEKALMLFIEMEAAAGLYSNATTMSS 324
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
++PA + + + IHGY KRG + ++ N LID Y++ G I ++ ++F+ S++
Sbjct: 325 IVPAYVRCEGISRKEGIHGYVIKRGLET-NRYLQNALIDMYSRMGDIKTSKRIFD--SME 381
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEG-LKFFDKMVEECE 260
+++VSW TII+ + + G +A+ MQ++ K +E + F +
Sbjct: 382 DRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMT 441
Query: 261 VLP------------DIKHYG-------------CLIDILERAGRLEQAEEVASGIPSQI 295
VLP +I Y L+D+ + G L A V +P I
Sbjct: 442 VLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMP--I 499
Query: 296 TNVVVW 301
NV+ W
Sbjct: 500 RNVITW 505
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/220 (30%), Positives = 102/220 (46%), Gaps = 18/220 (8%)
Query: 24 SFTYSFLIRTCVTLSYPN---LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
SFT + C L + LG Q+H + G + N AL MY LG L D+
Sbjct: 113 SFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKG-HWRTFSNNALMAMYAKLGRLDDAKS 171
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
L +R+LVTWN +I+ +S+ R EAL +F R+ E +P +T
Sbjct: 172 LLVLFEDRDLVTWNSMISS----------FSQNERFMEAL-MFLRLMVLEGVKPDGVTFA 220
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+VLPA +R + IH Y + + V + L+D Y CG + S +F D+ +
Sbjct: 221 SVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVF-DSVL 279
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQ-KVGLKPN 239
DRK + W +I+G+A ++A+ F M+ GL N
Sbjct: 280 DRK-IGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSN 318
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 101/224 (45%), Gaps = 21/224 (9%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76
P P +S T ++ C +LS G ++HA + S V V +AL DMY G L
Sbjct: 431 PFKP--NSITLMTVLPGCASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLN 488
Query: 77 DSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA----CEYT 132
+ ++FD++P RN++TWNVII Y + E+L LF M A
Sbjct: 489 LARRVFDQMPIRNVITWNVIIM----------AYGMHGKGKESLELFEDMVAEGAKGGEV 538
Query: 133 EPSEITILAVLPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191
+P+E+T +A+ + +G V L H + G H + C++D + G + A
Sbjct: 539 KPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHYA-CIVDLVGRAGKVEEA 597
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQ 232
L + +W++++ ++ +G+ A EN ++Q
Sbjct: 598 YGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQ 641
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 107/231 (46%), Gaps = 38/231 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQS--HVYVNTALGDMYVSLGFLKDSSK 80
D+F + +++ + LG Q+HA K G+ S V ++ L +MY G L D+ K
Sbjct: 9 DNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYK 68
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD + ER+ V+WN II+ L R A+ FR M E EPS T++
Sbjct: 69 VFDRITERDQVSWNSIISALC----------RFEEWEVAIKAFRLMLM-EGFEPSSFTLV 117
Query: 141 AVLPA---------IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191
++ A +W ++ C G+ R F+ +N L+ YAK G + A
Sbjct: 118 SMALACSNLRKRDGLWLGKQIHGCCFRKGHW--RTFS------NNALMAMYAKLGRLDDA 169
Query: 192 SK---LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
LFED ++LV+W ++IS F+ + EA+ M G+KP+
Sbjct: 170 KSLLVLFED-----RDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPD 215
>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 658
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 85/289 (29%), Positives = 155/289 (53%), Gaps = 37/289 (12%)
Query: 47 HAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG------- 99
H+VF ++ ++ V N+ + YV +G ++ + +F ++PE+ +V+W +I+G
Sbjct: 192 HSVFEQMPLRNEVSWNSMISG-YVRIGDVRAAQSIFYQMPEKTVVSWTAMISGYATNGDL 250
Query: 100 --------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
+V W +I GY + ++AL +F M P + T++++L A
Sbjct: 251 KSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSA 310
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
G + + + I+ Y +K + I + N LID +AKCG + +A ++F S ++ +
Sbjct: 311 CAHLGSLEHGKWINSYIKKNKLH-LSIPLGNALIDMFAKCGDVENAKEVFHHMS--KRCI 367
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDK 254
++WTT++SG A++G +EA+ F++M G KP+ I EEG + FD+
Sbjct: 368 ITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQ 427
Query: 255 MVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
MV+E + P I+HYGC++D+L RAG+LE+A + + + N V+W T
Sbjct: 428 MVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVRFTARMHLK-PNAVIWAT 475
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 147/332 (44%), Gaps = 49/332 (14%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG-FLKDSSKL 81
+SFT++FL++ T G +H K+GF S V+V +L Y + L + ++
Sbjct: 73 NSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSLLGFYANCSENLGSAYRV 132
Query: 82 FDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEAL 120
F+E+PER++++WN +I+ +V W ++ G S+ A
Sbjct: 133 FEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGLSKAGNMELAH 192
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
++F +M +E++ +++ + G+VR Q I ++ ++ +I
Sbjct: 193 SVFEQMPL-----RNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVVSW-----TAMIS 242
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-LKPN 239
YA G + SA +F V KN+VSW +ISG+ + +A+ F M G +P+
Sbjct: 243 GYATNGDLKSAENIFNHMPV--KNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPD 300
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
++ I E G K+ + +++ ++ I LID+ + G +E A+EV
Sbjct: 301 QTTLISILSACAHLGSLEHG-KWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVF 359
Query: 289 SGIPSQITNVVVWRTGFLRLLINSYFFSPITL 320
+ + ++ W T L +N I L
Sbjct: 360 HHMSKRC--IITWTTMVSGLAVNGKCREAINL 389
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 90/204 (44%), Gaps = 22/204 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ C L G +++ K + + AL DM+ G ++++ ++F
Sbjct: 300 DQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVF 359
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ +R ++TW +++GL ++G R EA+ LF +M E T+P ++ +AV
Sbjct: 360 HHMSKRCIITWTTMVSGLA-----VNGKCR-----EAINLFDKM-CLEGTKPDDVIFIAV 408
Query: 143 LPAIWKNGEVRNC-----QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
L A G V Q++ +G K + C++D + G + A +
Sbjct: 409 LSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHY-----GCMVDLLGRAGKLEEAVRFTAR 463
Query: 198 TSVDRKNLVSWTTIISGFAMHGMG 221
+ + N V W T++ +HG G
Sbjct: 464 MHL-KPNAVIWATLLFCCKIHGNG 486
>gi|357153075|ref|XP_003576330.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g18840-like [Brachypodium distachyon]
Length = 535
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 93/323 (28%), Positives = 155/323 (47%), Gaps = 71/323 (21%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG--- 99
G +LH K+G + YV AL MY LG L D+ K+FD +P RN V+WN ++
Sbjct: 144 GMELHGCVLKLGCGADRYVQNALVSMYGKLGRLGDARKVFDGMPARNAVSWNALVAAHGD 203
Query: 100 -------------------------------------------------LVKWTGIIDGY 110
V W +I Y
Sbjct: 204 VGDSRGAERVSQEMPERSVSWWNAEITRHARVGDMEAAARVFREMPGRDAVSWNSLIGSY 263
Query: 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF 170
+++ + AL +FR M EP+E+T+++VL A + GE+ + +HGY +G A
Sbjct: 264 AKLGQCARALKVFREMQD-SGVEPTELTLVSVLGACTEIGELELGKGVHGYLSSKGVLA- 321
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
D +V N L+D YAKCG + A ++FE S +++ W +I G ++HG +EA+E F
Sbjct: 322 DGYVGNALVDMYAKCGSLELARQVFESMST--RDITCWNAMIVGLSVHGYSREALELFNV 379
Query: 231 MQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
M+ ++P+ +G +EG F M E+ +++P +KHYGC++D+L R G
Sbjct: 380 MR---VEPDHVTFLGVLIVCSHSGLVDEGRVXFRSMTEDYKIVPGVKHYGCMVDMLCRCG 436
Query: 280 RLEQAEEVASGIPSQITNVVVWR 302
++ +A ++ + +P + N V+W+
Sbjct: 437 KVAEAYQMLNYMPLK-ANSVLWK 458
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 90/215 (41%), Gaps = 25/215 (11%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
T ++ C + LG +H S G + YV AL DMY G L+ + ++F+
Sbjct: 289 LTLVSVLGACTEIGELELGKGVHGYLSSKGVLADGYVGNALVDMYAKCGSLELARQVFES 348
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL- 143
+ R++ WN +I GL + GYSR EAL LF M EP +T L VL
Sbjct: 349 MSTRDITCWNAMIVGLS-----VHGYSR-----EALELFNVM----RVEPDHVTFLGVLI 394
Query: 144 ----PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+ G V + Y G + C++D +CG + A ++
Sbjct: 395 VCSHSGLVDEGRVXFRSMTEDYKIVPGVKHY-----GCMVDMLCRCGKVAEAYQMLNYMP 449
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
+ + N V W +++ +HG A + F + ++
Sbjct: 450 L-KANSVLWKMVLAACRLHGHIHHANKAFHELHQL 483
>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 740
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 147/293 (50%), Gaps = 26/293 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D + + ++ C L N G Q+HA + Q H+YV +AL DMY L + +
Sbjct: 265 MDQYPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTV 324
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + ++N+V+ WT ++ GY + R+ EA+ +F M +P T+
Sbjct: 325 FDRMKQKNVVS----------WTAMVVGYGQTGRAGEAVKIFLDMQR-SGIDPDHYTLGQ 373
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+ A + HG G + I VSN L+ Y KCG I +++LF + +V
Sbjct: 374 AISACANISSLEEGSQFHGKAITAGLIHY-ITVSNSLVTLYGKCGDIDDSTRLFNEMNV- 431
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
++ VSWT ++S +A G EA++ F++M ++GLKP+ G E+G +
Sbjct: 432 -RDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQR 490
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+F+ M+ E ++P HY C+ID+ R+GR+E+A +G+P + + + W T
Sbjct: 491 YFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFR-PDAIGWTT 542
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 122/252 (48%), Gaps = 28/252 (11%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRTCVTLSYPN----LGTQLHAVFSKVGFQSHVYVNTALGD 67
+ +++ + F S + T + LS N LG Q+H K+GF+S++ V + L D
Sbjct: 120 VKAYNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLD 179
Query: 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITGL--------------------VKWTGII 107
MY +G + D+ K+F L +RN V +N ++ GL V W+ +I
Sbjct: 180 MYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMI 239
Query: 108 DGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF 167
G ++ EA+ FR M E + + +VLPA G + + + IH +
Sbjct: 240 KGLAQNGMEKEAIECFREM-KIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIRTNL 298
Query: 168 NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVEN 227
I+V + LID Y KC C+ A +F+ + +KN+VSWT ++ G+ G EAV+
Sbjct: 299 QDH-IYVGSALIDMYCKCKCLHYAKTVFD--RMKQKNVVSWTAMVVGYGQTGRAGEAVKI 355
Query: 228 FERMQKVGLKPN 239
F MQ+ G+ P+
Sbjct: 356 FLDMQRSGIDPD 367
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/201 (29%), Positives = 92/201 (45%), Gaps = 41/201 (20%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y G L + + F++LP+R+ VTWNV +I+GYS A+ + M
Sbjct: 79 YSKSGHLSEMERTFEKLPDRDGVTWNV----------LIEGYSLSGLVGAAVKAYNTMMK 128
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
+ + +T++ +L NG V + IHG K GF ++ + V + L+D Y+K GCI
Sbjct: 129 DFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESY-LLVGSPLLDMYSKVGCI 187
Query: 189 FSASKLFEDTSVDR-----------------------------KNLVSWTTIISGFAMHG 219
A K+F DR K+ VSW+ +I G A +G
Sbjct: 188 SDAKKVFYGLD-DRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQNG 246
Query: 220 MGKEAVENFERMQKVGLKPNR 240
M KEA+E F M+ GLK ++
Sbjct: 247 MEKEAIECFREMKIEGLKMDQ 267
>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
Length = 890
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 90/311 (28%), Positives = 155/311 (49%), Gaps = 37/311 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T+ +++ C G Q+HA SKVGF+S + TA+ +MY G + ++ ++F
Sbjct: 385 NKVTFMSILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVF 444
Query: 83 DELPERNLVTWNVIIT---------------------GLVKWTGIIDGYSRMNRSNEALA 121
++ +N+V W ++T +V W +I GY++ +
Sbjct: 445 SKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFE 504
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
L M E +P +TI+++L A + +L+H K G + D V+ LI
Sbjct: 505 LLSSMKV-EGFQPDRVTIISILEACGALSALERGKLVHAEAVKLGLES-DTVVATSLIGM 562
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR- 240
Y+KCG + A +F+ S ++ V+W +++G+ HG+G EAV+ F+RM K + PN
Sbjct: 563 YSKCGEVTEARTVFDKIS--NRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEI 620
Query: 241 --------SWRIG--EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
R G +EG + F M E+ + P +HYGC++D+L RAGRL++AEE
Sbjct: 621 TFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQR 680
Query: 291 IPSQITNVVVW 301
+P + ++ VW
Sbjct: 681 MPCE-PDISVW 690
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 115/223 (51%), Gaps = 19/223 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T+ +++ C S ++H V G ++ V V TAL MY G + + ++F
Sbjct: 178 NRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIF 237
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++ ERN+V+ WT II ++ + NEA L+ +M + P+ +T +++
Sbjct: 238 QKMKERNVVS----------WTAIIQANAQHRKLNEAFELYEKMLQAGIS-PNAVTFVSL 286
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + + + IH + +RG D+ V+N LI Y KC CI A + F+ S +
Sbjct: 287 LNSCNTPEALNRGRRIHSHISERGLET-DVVVANALITMYCKCNCIQDARETFDRMS--K 343
Query: 203 KNLVSWTTIISGFAMHG-MGKEAVEN----FERMQKVGLKPNR 240
++++SW+ +I+G+A G KE+++ ERM++ G+ PN+
Sbjct: 344 RDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNK 386
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/307 (26%), Positives = 145/307 (47%), Gaps = 34/307 (11%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
F +Y+++ Q I SP ++ T+ L+ +C T N G ++H+ S+ G ++ V
Sbjct: 265 FELYEKMLQAGI---SP-----NAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVV 316
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
V AL MY ++D+ + FD + +R++++W+ +I G + GY +E
Sbjct: 317 VANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQ-----SGYQDKESLDEVF 371
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
L RM E P+++T +++L A +G + + IH K GF + D + + +
Sbjct: 372 QLLERMRR-EGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFES-DRSLQTAIFN 429
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
YAKCG I+ A ++F + ++ KN+V+W ++++ + G A + F M +
Sbjct: 430 MYAKCGSIYEAEQVF--SKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVV--- 484
Query: 241 SWRIGEEGLKFFDKMVEECEVLPDIKHYG------CLIDILE--------RAGRLEQAEE 286
SW + G + + E+L +K G +I ILE G+L AE
Sbjct: 485 SWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERGKLVHAEA 544
Query: 287 VASGIPS 293
V G+ S
Sbjct: 545 VKLGLES 551
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 102/219 (46%), Gaps = 14/219 (6%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L +S TY +I C L G +H ++G +Y+ +L + Y G + +
Sbjct: 75 LVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQ 134
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F + R++VT W+ +I Y+ N +A F RM EP+ IT L
Sbjct: 135 VFRRMTLRDVVT----------WSSMIAAYAGNNHPAKAFDTFERMKDAN-IEPNRITFL 183
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
++L A + + IH + G D+ V+ LI Y+KCG I A ++F+ +
Sbjct: 184 SILKACNNYSMLEKAREIHTVVKASGMET-DVAVATALITMYSKCGEISLACEIFQ--KM 240
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+N+VSWT II A H EA E +E+M + G+ PN
Sbjct: 241 KERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPN 279
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 27/221 (12%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
V++ L + + P D T ++ C LS G +HA K+G +S V
Sbjct: 502 VFELLSSMKVEGFQP-----DRVTIISILEACGALSALERGKLVHAEAVKLGLESDTVVA 556
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
T+L MY G + ++ +FD++ R+ V WN ++ GY + EA+ L
Sbjct: 557 TSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLA----------GYGQHGIGPEAVDL 606
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLI-----HGYGEKRGFNAFDIHVSNC 177
F+RM E P+EIT AV+ A + G V+ + I + K G + C
Sbjct: 607 FKRMLK-ERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQHY-----GC 660
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218
++D + G + A + + + ++ W ++ H
Sbjct: 661 MVDLLGRAGRLQEAEEFIQRMPCE-PDISVWHALLGACKSH 700
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Query: 156 QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGF 215
+++H ++ G A DI++ N LI+ Y+K G + S ++F ++ +++V+W+++I+ +
Sbjct: 98 KMVHKQLDELGL-AIDIYLGNSLINFYSKFGDVASVEQVFRRMTL--RDVVTWSSMIAAY 154
Query: 216 AMHGMGKEAVENFERMQKVGLKPNR 240
A + +A + FERM+ ++PNR
Sbjct: 155 AGNNHPAKAFDTFERMKDANIEPNR 179
>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
Length = 803
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 146/304 (48%), Gaps = 34/304 (11%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L +S T + ++ CV + +H K G +V L DMY LG + + +
Sbjct: 315 LANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMR 374
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT-------- 132
+F ++ +R+LVTWN +IT GY +AL L +M E
Sbjct: 375 IFGKMEDRDLVTWNTMIT----------GYVFSEHHEDALLLLHKMQNLERKVSKGASRV 424
Query: 133 --EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190
+P+ IT++ +LP+ + + IH Y K A D+ V + L+D YAKCGC+
Sbjct: 425 SLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNL-ATDVAVGSALVDMYAKCGCLQM 483
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG----- 245
+ K+F+ + +KN+++W II + MHG G+EA++ M G+KPN I
Sbjct: 484 SRKVFD--QIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAAC 541
Query: 246 ------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVV 299
+EGL+ F M + V P HY C++D+L RAGR+++A ++ + +P
Sbjct: 542 SHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAG 601
Query: 300 VWRT 303
W +
Sbjct: 602 AWSS 605
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 137/302 (45%), Gaps = 39/302 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVSLGFLKDSSKL 81
D FT S ++ C L G +LHA K G + +V +AL DMY + + ++
Sbjct: 214 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRV 273
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + +R + WN +I G YS+ EAL LF M + T+
Sbjct: 274 FDGMFDRKIGLWNAMIAG----------YSQNEHDKEALLLFIGMEESAGLLANSTTMAG 323
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
V+PA ++G + IHG+ KRG + D V N L+D Y++ G I A ++F ++
Sbjct: 324 VVPACVRSGAFSRKEAIHGFVVKRGLDR-DRFVQNTLMDMYSRLGKIDIAMRIF--GKME 380
Query: 202 RKNLVSWTTIISGFAMHGMGKEA------VENFER-----MQKVGLKPNR---------- 240
++LV+W T+I+G+ ++A ++N ER +V LKPN
Sbjct: 381 DRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSC 440
Query: 241 -SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVV 299
+ +G + ++ + D+ L+D+ + G L+ + +V IP + NV+
Sbjct: 441 AALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK--NVI 497
Query: 300 VW 301
W
Sbjct: 498 TW 499
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 105/226 (46%), Gaps = 18/226 (7%)
Query: 24 SFTYSFLIRTCVTLSYPN---LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
SFT ++ C L P +G Q+HA + G + +NT + MY LG L S
Sbjct: 112 SFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVA-MYGKLGKLASSKV 170
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
L R+LVTWN +++ L + ++ EAL R M E EP E TI
Sbjct: 171 LLGSFGGRDLVTWNTVLSSLCQNEQLL----------EALEYLREMV-LEGVEPDEFTIS 219
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+VLPA +R + +H Y K G + V + L+D Y C + S ++F D
Sbjct: 220 SVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVF-DGMF 278
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQK-VGLKPNRSWRIG 245
DRK + W +I+G++ + KEA+ F M++ GL N + G
Sbjct: 279 DRK-IGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAG 323
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 121/285 (42%), Gaps = 47/285 (16%)
Query: 14 SHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG 73
S L P +S T ++ +C LS G ++HA K + V V +AL DMY G
Sbjct: 422 SRVSLKP--NSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCG 479
Query: 74 FLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE 133
L+ S K+FD++P++N++TWNVII Y EA+ L R M + +
Sbjct: 480 CLQMSRKVFDQIPQKNVITWNVIIM----------AYGMHGNGQEAIDLLRMMMV-QGVK 528
Query: 134 PSEITILAVLPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSAS 192
P+E+T ++V A +G V ++ + G H + C++D + G I A
Sbjct: 529 PNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYA-CVVDLLGRAGRIKEAY 587
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKPNRSWRIGEEGL 249
+L D +W++++ +H +G+ A +N + L+PN +
Sbjct: 588 QLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNL-----IQLEPNVA-------- 634
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
HY L +I AG ++A EV + Q
Sbjct: 635 ----------------SHYVLLANIYSSAGLWDKATEVRRNMKEQ 663
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 104/226 (46%), Gaps = 29/226 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQ-SHVYVNTALGDMYVSLGFLKDSSKL 81
D++ + L++ L LG Q+HA K G+ V V L ++Y G K+
Sbjct: 9 DNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKV 68
Query: 82 FDELPERNLVTWNVIITGLV---KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
FD + ERN V+WN +I+ L KW AL FR M E EPS T
Sbjct: 69 FDRISERNQVSWNSLISSLCSFEKW-------------EMALEAFRCMLD-ENVEPSSFT 114
Query: 139 ILAVLPAI----WKNGEVRNCQLIHGYGEKRG-FNAFDIHVSNCLIDTYAKCGCIFSASK 193
+++V+ A G + Q +H YG ++G N+F I N L+ Y K G + S+
Sbjct: 115 LVSVVTACSNLPMPEGLMMGKQ-VHAYGLRKGELNSFII---NTLVAMYGKLGKLASSKV 170
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
L S ++LV+W T++S + EA+E M G++P+
Sbjct: 171 LL--GSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 214
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 133 EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSAS 192
+P A+L A+ ++ + IH + K G+ + V+N L++ Y KCG +
Sbjct: 7 KPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVY 66
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
K+F+ S +N VSW ++IS + A+E F M ++P+
Sbjct: 67 KVFDRIS--ERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPS 111
>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g03580-like [Cucumis sativus]
Length = 895
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 145/281 (51%), Gaps = 25/281 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DS T+ L+ L+ N G +H K GF++ + + +L D+Y G + D K+F
Sbjct: 421 DSVTFVLLLSIFSQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVF 480
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ ++++WN +I V + G+ +N E P E T+L +
Sbjct: 481 SYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRT-----------EGLMPDEATVLGI 529
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LP R + IHGY K GF + ++ + N LI+ Y+KCG + + K+F+ +
Sbjct: 530 LPMCSLLAVRRQGKEIHGYIFKSGFES-NVPIGNALIEMYSKCGSLENCIKVFK--YMKE 586
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
K++V+WT +IS F M+G GK+A++ F+ M+ G+ P+ I +EGL+F
Sbjct: 587 KDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRF 646
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
FD+M + + P ++HY C++D+L R+G L QAEE +P
Sbjct: 647 FDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMP 687
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 112/217 (51%), Gaps = 16/217 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT S ++ C +L G +H V K+G V + L MY L+++ ++F
Sbjct: 221 DCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVF 280
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++ ++ VTWN +I G Y+++ R ++ LF M + P ++I +
Sbjct: 281 SKMAVKDSVTWNTMICG----------YAQLGRHEASVKLFMDMI--DGFVPDMLSITST 328
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A ++G+++ + +H Y GF D N LID YAKCG + +A ++F+ T
Sbjct: 329 IRACGQSGDLQVGKFVHKYLIGSGFEC-DTVACNILIDMYAKCGDLLAAQEVFDTTKC-- 385
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
K+ V+W ++I+G+ G KE +E+F +M K+ KP+
Sbjct: 386 KDSVTWNSLINGYTQSGYYKEGLESF-KMMKMERKPD 421
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 136/304 (44%), Gaps = 38/304 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FT+ +I +C + LG +H ++GF+S +Y+ AL DMY L ++ +F
Sbjct: 120 DAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVF 179
Query: 83 DELPERNLVTWNVIITGLVK---WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
+E+ R+ V+WN +I+G W +D Y + FR P T+
Sbjct: 180 EEMSNRDSVSWNSLISGYCSNGFWEDALDMYHK----------FRMTGMV----PDCFTM 225
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+VL A V+ +HG EK G A D+ + N L+ Y K + A ++F +
Sbjct: 226 SSVLLACGSLMAVKEGVAVHGVIEKIGI-AGDVIIGNGLLSMYFKFERLREARRVFSKMA 284
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----RSWR-IGEEGL---- 249
V K+ V+W T+I G+A G + +V+ F M G P+ + R G+ G
Sbjct: 285 V--KDSVTWNTMICGYAQLGRHEASVKLFMDMID-GFVPDMLSITSTIRACGQSGDLQVG 341
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLL 309
KF K + D LID+ + G L A+EV ++ + V W + L
Sbjct: 342 KFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFD--TTKCKDSVTWNS-----L 394
Query: 310 INSY 313
IN Y
Sbjct: 395 INGY 398
>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At3g23330-like [Cucumis
sativus]
Length = 712
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 150/280 (53%), Gaps = 25/280 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DSFT S ++ + G ++H + G + +YV ++L DMY + DS ++F
Sbjct: 238 DSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVF 297
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
L ER+ ++WN II G V+ G+ D E L FR+M + +P + ++
Sbjct: 298 TLLTERDGISWNSIIAGCVQ-NGLFD---------EGLRFFRQMLMAK-IKPKSYSFSSI 346
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+PA + + +HGY + GF+ +I +++ L+D YAKCG I +A ++F+ +
Sbjct: 347 MPACAHLTTLHLGKQLHGYITRNGFDE-NIFIASSLVDMYAKCGNIRTAKQIFDRMRL-- 403
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+++VSWT +I G A+HG +A+E FE+M+ G+KPN + +E K+
Sbjct: 404 RDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKY 463
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
F+ M + + P ++HY + D+L RAGRLE+A + G+
Sbjct: 464 FNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGM 503
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 115/238 (48%), Gaps = 26/238 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK-- 80
D + ++++C L NLG LH +VG +Y AL +MY L FL++S +
Sbjct: 105 DHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQR 164
Query: 81 -----LFDELPERNLVTWNVII---------------TGLVKWTGIIDGYSRMNRSNEAL 120
+FDE+ ER V + LV W II G +R E L
Sbjct: 165 LGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETL 224
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
+ R M +P T+ +VLP I +N ++ + IHG ++G +A DI+V++ LID
Sbjct: 225 RMIREMGGANL-KPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDA-DIYVASSLID 282
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
YAKC + + ++F T + ++ +SW +II+G +G+ E + F +M +KP
Sbjct: 283 MYAKCTRVADSCRVF--TLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKP 338
>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Vitis vinifera]
Length = 877
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 151/294 (51%), Gaps = 30/294 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLH--AVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
D FTY +++ C N G ++H + S++G S +V AL DMY G ++ + K
Sbjct: 476 DEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDS--FVGIALIDMYSKCGMMEKAEK 533
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
L D L E+ +V+WN II+ G+S +S EA F +M +P T
Sbjct: 534 LHDRLAEQTVVSWNAIIS----------GFSLQKQSEEAQKTFSKMLEMG-VDPDNFTYA 582
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+L V + IH K+ + D ++S+ L+D Y+KCG + +FE
Sbjct: 583 TILDTCANLVTVELGKQIHAQIIKKELQS-DAYISSTLVDMYSKCGNMQDFQLIFEKAP- 640
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
++ V+W ++ G+A HG+G+EA++ FE MQ +KPN + + E+GL
Sbjct: 641 -NRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGL 699
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+F M+ + P ++HY C++DI+ R+G++ +A E+ G+P + + V+WRT
Sbjct: 700 HYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFE-ADAVIWRT 752
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 146/320 (45%), Gaps = 49/320 (15%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T++ + R+C LS LG+QLH K F + V + TA DMY+ L D+ KLF+ L
Sbjct: 277 TFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSL 336
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
P NL ++N II GY+R ++ EAL +FR + + S + L
Sbjct: 337 PNHNLQSYNAIIV----------GYARSDKGIEALGMFRLL------QKSGLG----LDE 376
Query: 146 IWKNGEVRNCQLIHGYGEK--------RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
+ +G R C +I G E + +I V+N ++D Y KCG + A +FE+
Sbjct: 377 VSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEE 436
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGE 246
++ VSW II+ +G ++ + F M + G++P+ W+
Sbjct: 437 MV--SRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALN 494
Query: 247 EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFL 306
G++ +++++ L LID+ + G +E+AE++ + Q VV W
Sbjct: 495 CGMEIHNRIIKSRLGLDSFVGIA-LIDMYSKCGMMEKAEKLHDRLAEQ--TVVSWNA--- 548
Query: 307 RLLINSYFFSPITLNSQRLF 326
+I+ + + +Q+ F
Sbjct: 549 --IISGFSLQKQSEEAQKTF 566
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 103/219 (47%), Gaps = 14/219 (6%)
Query: 18 LPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD 77
+ +FD T++ ++++C +L G Q+H + K+GF V +AL DMY L
Sbjct: 168 MGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDC 227
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
S + F +PE+N V+W+ II G V+ + G L LF+ M S+
Sbjct: 228 SIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGG----------LELFKEMQKAG-VGVSQS 276
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
T +V + +R +HG+ K F D+ + +D Y KC + A KLF
Sbjct: 277 TFASVFRSCAGLSALRLGSQLHGHALKTDFGT-DVVIGTATLDMYMKCNNLSDAQKLF-- 333
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
S+ NL S+ II G+A G EA+ F +QK GL
Sbjct: 334 NSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGL 372
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 95/198 (47%), Gaps = 14/198 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FTY+ ++ TC L LG Q+HA K QS Y+++ L DMY G ++D +F
Sbjct: 577 DNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIF 636
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++ P R+ VTWN ++ GY++ EAL +F M E +P+ T LAV
Sbjct: 637 EKAPNRDFVTWNAMVC----------GYAQHGLGEEALKIFEYMQL-ENVKPNHATFLAV 685
Query: 143 LPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G V + H G + H S C++D + G + A +L E +
Sbjct: 686 LRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYS-CVVDIMGRSGQVSKALELIEGMPFE 744
Query: 202 RKNLVSWTTIISGFAMHG 219
+ V W T++S +HG
Sbjct: 745 -ADAVIWRTLLSICKIHG 761
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 67/221 (30%), Positives = 106/221 (47%), Gaps = 20/221 (9%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D + S R C + G Q+H + K QS++ V A+ DMY G L ++ +
Sbjct: 374 LDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLV 433
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+E+ R+ V+WN II + + + L+LF M EP E T +
Sbjct: 434 FEEMVSRDAVSWNAIIA----------AHEQNGNEEKTLSLFVWMLQ-SGMEPDEFTYGS 482
Query: 142 VLPAIWKNGEVRNCQL-IHG--YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
VL A + NC + IH + G ++F V LID Y+KCG + A KL +
Sbjct: 483 VLKAC-AGWQALNCGMEIHNRIIKSRLGLDSF---VGIALIDMYSKCGMMEKAEKLHDRL 538
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+ + +VSW IISGF++ +EA + F +M ++G+ P+
Sbjct: 539 A--EQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPD 577
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 104/237 (43%), Gaps = 25/237 (10%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T+S + + C G Q HA F+ V+V L MY+ L+ + K+FD +
Sbjct: 44 TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103
Query: 86 PERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALALFR 124
P+R+ V+WN ++ G +V W +I GY + + +F
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163
Query: 125 RMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK 184
+M T T VL + + IHG K GF+ D+ + L+D YAK
Sbjct: 164 QMGRMG-TVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDC-DVVTGSALLDMYAK 221
Query: 185 CGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
C + + + F S+ KN VSW+ II+G + + +E F+ MQK G+ ++S
Sbjct: 222 CKKLDCSIQFFH--SMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQS 276
>gi|357152605|ref|XP_003576175.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g12770-like [Brachypodium distachyon]
Length = 500
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/282 (31%), Positives = 144/282 (51%), Gaps = 24/282 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D + +R C L P LG LH + GF +V V++AL DMY G L +++++F
Sbjct: 102 DRYAVPAALRACAELQDPLLGAVLHGFAVQFGFLGNVVVSSALLDMYAKSGLLDNAARVF 161
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI-TILA 141
DE+PE++ V WN ++T Y+R + E L +FRR ++ ++ +
Sbjct: 162 DEMPEKDSVVWNCMVT----------AYARAGMAAETLEIFRRAQVEVVNMARDLRSVPS 211
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL A K GE+ + IHG + D+ + N LID YAKCG + ++ +F +
Sbjct: 212 VLNACGKEGELMKGREIHGRMVRCLAFDSDVPIGNALIDMYAKCGHVDASRAVF--AGML 269
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLK 250
+N+VSW+T+IS + +HG GKEA+ ++ M +KPN + +G
Sbjct: 270 ERNVVSWSTLISCYGVHGKGKEALRIYKEMLSQRVKPNGITFMSVLSSCSHSGLVTDGRM 329
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
F+ M + V P +HY ++DIL RAG +E+A + +P
Sbjct: 330 IFESMSKVHGVEPTAEHYASMVDILGRAGAIEEAVGLIRKMP 371
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 123/289 (42%), Gaps = 33/289 (11%)
Query: 28 SFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE 87
S L+R C G QLH G + T L +Y L + K+FD +P
Sbjct: 10 SGLLRRCAAAGALPAGAQLHVQAIVRGHLPQATLETDLVLLYCRCAALPCARKVFDAMPS 69
Query: 88 RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIW 147
++ +N+++ + AL L + A + P + A L A
Sbjct: 70 PSMHAYNILLAA--------------SPPRAALELLSGLIAAGF-RPDRYAVPAALRACA 114
Query: 148 KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
+ + ++HG+ + GF ++ VS+ L+D YAK G + +A+++F++ + K+ V
Sbjct: 115 ELQDPLLGAVLHGFAVQFGFLG-NVVVSSALLDMYAKSGLLDNAARVFDE--MPEKDSVV 171
Query: 208 WTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWR--------IGEE-----GLKFFDK 254
W +++ +A GM E +E F R Q + R R G+E G + +
Sbjct: 172 WNCMVTAYARAGMAAETLEIFRRAQVEVVNMARDLRSVPSVLNACGKEGELMKGREIHGR 231
Query: 255 MVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
MV D+ LID+ + G ++ + V +G+ + NVV W T
Sbjct: 232 MVRCLAFDSDVPIGNALIDMYAKCGHVDASRAVFAGMLER--NVVSWST 278
>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
Length = 989
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 149/292 (51%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ +S I C + N G Q+HA G+ + + AL +Y G +K++ F
Sbjct: 515 DNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEF 574
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+++ ++ ++WN G+I G+++ +AL +F +M + E S T +
Sbjct: 575 EKIDAKDSISWN----------GLISGFAQSGYCEDALKVFAQMNRAKL-EASFFTFGSA 623
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A ++ + IH KRGF++ DI VSN LI YAKCG I A + F +
Sbjct: 624 VSAAANIANIKQGKQIHAMIIKRGFDS-DIEVSNALITFYAKCGSIEDARREF--CEMPE 680
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN VSW +I+G++ HG G EAV FE+M++VG PN +G +GL +
Sbjct: 681 KNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGY 740
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ M +E ++P HY C++D++ RAG L +A + +P + + +WRT
Sbjct: 741 FESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIE-PDATIWRT 791
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 120/244 (49%), Gaps = 32/244 (13%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
F +++Q+Q L P + FTY ++RTC ++ +LG Q+H K GFQ +VY
Sbjct: 400 FRIFRQMQI------KGLIP--NQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVY 451
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
V + L DMY G L + + L E ++V+ WT +I GY++ N EAL
Sbjct: 452 VCSVLIDMYAKHGKLDTAHVILRTLTEDDVVS----------WTALISGYAQHNLFAEAL 501
Query: 121 ALFRRM-----AACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS 175
F+ M + S I+ A + A+ + ++ + GY E D+ +
Sbjct: 502 KHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSE-------DLSIG 554
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
N L+ YA+CG I A FE +D K+ +SW +ISGFA G ++A++ F +M +
Sbjct: 555 NALVSLYARCGRIKEAYLEFE--KIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAK 612
Query: 236 LKPN 239
L+ +
Sbjct: 613 LEAS 616
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 111/217 (51%), Gaps = 14/217 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + L+ C + G QLH+ K G S + V AL D+YV+ +K + ++F
Sbjct: 313 DCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMF 372
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
N+V WNV++ + +++ +E+ +FR+M + P++ T ++
Sbjct: 373 LTAQTENVVLWNVMLV----------AFGKLDNLSESFRIFRQMQI-KGLIPNQFTYPSI 421
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L G + + IH K GF F+++V + LID YAK G + +A + + D
Sbjct: 422 LRTCTSVGALDLGEQIHTQVIKTGFQ-FNVYVCSVLIDMYAKHGKLDTAHVILRTLTED- 479
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
++VSWT +ISG+A H + EA+++F+ M G++ +
Sbjct: 480 -DVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSD 515
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 132/281 (46%), Gaps = 27/281 (9%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
TY +L+ C+ +LH K+GF + + L D+Y +LG L K+F+++
Sbjct: 12 TYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDM 71
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
P R++ +W+ II+G ++ SN L LF M E P+EI+ +VL A
Sbjct: 72 PNRSVRSWDKIISGFME----------KKMSNRVLDLFSCMIE-ENVSPTEISFASVLRA 120
Query: 146 IWKNG-EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
+ +R + IH G I +SN LI YAK G I SA K+F++ K+
Sbjct: 121 CSGHRIGIRYAEQIHARIICHGLLCSPI-ISNPLIGLYAKNGLIISARKVFDNLCT--KD 177
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN----RSWRIGEEGLKFFDKMVEECE 260
VSW +ISGF+ +G +EA+ F M G+ P S G +K FD + E+
Sbjct: 178 SVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFD-VGEQLH 236
Query: 261 VL-----PDIKHYGC--LIDILERAGRLEQAEEVASGIPSQ 294
L ++ Y C L+ + R AE+V S + S+
Sbjct: 237 ALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSK 277
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/224 (28%), Positives = 109/224 (48%), Gaps = 19/224 (8%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76
P P +F S ++ C + ++G QLHA+ K G YV AL +Y +
Sbjct: 211 PTPYVFSS-----VLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFV 265
Query: 77 DSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE 136
+ K+F ++ ++ V++N +I+GL + G DG AL LF +M +Y +P
Sbjct: 266 SAEKVFSKMQSKDEVSFNSLISGLAQ-QGFSDG---------ALELFTKMKR-DYLKPDC 314
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
+T+ ++L A NG + + +H Y K G ++ D+ V L+D Y C I +A ++F
Sbjct: 315 VTVASLLSACASNGALCKGEQLHSYVIKAGISS-DMIVEGALLDLYVNCSDIKTAHEMF- 372
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+ +N+V W ++ F E+ F +MQ GL PN+
Sbjct: 373 -LTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQ 415
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 92/195 (47%), Gaps = 14/195 (7%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
FT+ + ++ G Q+HA+ K GF S + V+ AL Y G ++D+ + F E
Sbjct: 618 FTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCE 677
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+PE+N V+WN +IT GYS+ NEA+ LF +M P+ +T + VL
Sbjct: 678 MPEKNDVSWNAMIT----------GYSQHGYGNEAVNLFEKMKQVGEM-PNHVTFVGVLS 726
Query: 145 AIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
A G V + ++ G H + C++D ++ G + A K E+ ++
Sbjct: 727 ACSHVGLVTKGLGYFESMSKEHGLVPKPAHYA-CVVDLISRAGFLSRARKFIEEMPIEPD 785
Query: 204 NLVSWTTIISGFAMH 218
+ W T++S +H
Sbjct: 786 ATI-WRTLLSACTVH 799
>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
Length = 672
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/295 (31%), Positives = 157/295 (53%), Gaps = 31/295 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + ++ C LG Q+H+ + GF S++ + AL D+Y G ++ + +L
Sbjct: 206 DESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACELL 265
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ L +++++WN +I GY+ MN EAL LF+ M T P+++T+L++
Sbjct: 266 EGLSNKDVISWNT----------LIGGYTHMNLYKEALLLFQEMLRSGET-PNDVTMLSI 314
Query: 143 LPAIWKNGEVRNCQLIHGYGEKR-----GFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
LPA G + + IH Y +K+ NA + S LID YAKCG I +A ++ D
Sbjct: 315 LPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTS--LIDMYAKCGDIDAAPQV-SD 371
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------E 246
+S ++L +W +I GFAMHG A + F RM+K G++P+ +G +
Sbjct: 372 SSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLD 431
Query: 247 EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
G F M ++ + P ++HYGC+ID+L +G ++AEE+ + +P + + V+W
Sbjct: 432 LGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPME-PDGVIW 485
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/299 (28%), Positives = 142/299 (47%), Gaps = 39/299 (13%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
FT+ FL+++C G Q+H K+GF +YV+T+L MY G L+D+ K+FD
Sbjct: 76 FTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDR 135
Query: 85 LPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALALF 123
R++V++ +ITG +V W +I GY+ +AL LF
Sbjct: 136 SSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELF 195
Query: 124 RRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183
+ M +P E T+ V+ A ++G + + +H + GF + ++ + N LID Y+
Sbjct: 196 KEMMKTN-VKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGS-NLKIVNALIDLYS 253
Query: 184 KCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR--- 240
KCG + +A +L E S K+++SW T+I G+ + KEA+ F+ M + G PN
Sbjct: 254 KCGEVETACELLEGLS--NKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTM 311
Query: 241 -----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
+ IG + DK ++ V LID+ + G ++ A +V+
Sbjct: 312 LSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVS 370
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 124/291 (42%), Gaps = 60/291 (20%)
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F+ +PE N + WN++ G++ + AL L+ M + P+ T
Sbjct: 31 VFETIPEPNQLIWNIMFR----------GHALSSDPVSALKLYVVMISLGLL-PNFFTFP 79
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS- 199
+L + K+ + Q IHG+ K GF+ D++V LI YA+ G + A K+F+ +S
Sbjct: 80 FLLKSCAKSKTFKEGQQIHGHVLKLGFD-LDLYVHTSLISMYAQNGRLEDAQKVFDRSSH 138
Query: 200 ----------------------------VDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
+ K++VSW +ISG+A G K+A+E F+ M
Sbjct: 139 RDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEM 198
Query: 232 QKVGLKPNRSW------RIGEEGLKFFDKMVE----ECEVLPDIKHYGCLIDILERAGRL 281
K +KP+ S + G + V + ++K LID+ + G +
Sbjct: 199 MKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEV 258
Query: 282 EQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAAL 332
E A E+ G+ ++ +V+ W T LI Y + + L + L F L
Sbjct: 259 ETACELLEGLSNK--DVISWNT-----LIGGY--THMNLYKEALLLFQEML 300
>gi|225445120|ref|XP_002280513.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77170
[Vitis vinifera]
gi|297738768|emb|CBI28013.3| unnamed protein product [Vitis vinifera]
Length = 479
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 151/291 (51%), Gaps = 26/291 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DS+T +++ G Q+H+V + G + + Y + +Y G +++ K+F
Sbjct: 128 DSYTIPIVLKAVCQAFATGFGRQVHSVAIRHGLELNEYCESGFISVYSKAGEFQNAHKVF 187
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++ R L +WN II GL S+ R+ EA+ +F M C + EP E+T+++V
Sbjct: 188 EQNRFRKLGSWNAIIGGL----------SQGGRAKEAVTMFMEMRKCGF-EPDEVTMVSV 236
Query: 143 LPAIWKNGEVR-NCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
A G + QL + + D N L+D Y KCG + A ++F + +D
Sbjct: 237 TSACGSLGHLDLALQLHKCVYQAKTSERSDTLTLNSLVDMYGKCGRMDLAYRVF--SRMD 294
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
N+ SWT++I G+AMHG +A+E F M++ G++PN IG +EG
Sbjct: 295 EPNVSSWTSMIVGYAMHGQLYDALECFRCMREAGVRPNHVTFIGVLSACVHGGAVQEGKY 354
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+FD M ++P ++HYGC++D+L RAG LE+A ++ +P + NV+VW
Sbjct: 355 YFDMMTTAYGLVPRMQHYGCMVDLLGRAGLLEEARKMVERMPMK-ANVIVW 404
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 4/138 (2%)
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
+W II Y+R+ + AL+++ M+ + P TI VL A+ + + +H
Sbjct: 96 QWNNIIRSYTRLEAHHYALSIYIAMSRAGVS-PDSYTIPIVLKAVCQAFATGFGRQVHSV 154
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
+ G + + + I Y+K G +A K+FE + L SW II G + G
Sbjct: 155 AIRHGLE-LNEYCESGFISVYSKAGEFQNAHKVFEQNRF--RKLGSWNAIIGGLSQGGRA 211
Query: 222 KEAVENFERMQKVGLKPN 239
KEAV F M+K G +P+
Sbjct: 212 KEAVTMFMEMRKCGFEPD 229
>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Cucumis sativus]
gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Cucumis sativus]
Length = 667
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/299 (31%), Positives = 157/299 (52%), Gaps = 36/299 (12%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D FT ++R C L G ++HA K GF+ V ++L MY+ G L D K
Sbjct: 191 LPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEK 250
Query: 81 LFDELPERNLVTWNVIITGLVKW---TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
L +P R +V WN +I G + +++ Y+ M +A FR P +I
Sbjct: 251 LIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMK-----MAGFR---------PDKI 296
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
T ++VL A + + Q IH K G ++ + V + LI Y++ GC+ + K F
Sbjct: 297 TFVSVLSACSELATLGQGQQIHAEVIKAGASSV-LAVVSSLISMYSRSGCLEDSIKAF-- 353
Query: 198 TSVDRKN--LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRI 244
VDR+N +V W+++I+ + HG G+EA+E F +M+ + ++ N +
Sbjct: 354 --VDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGL 411
Query: 245 GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
E+G ++FD MV++ ++ P I+HY C++D+L RAGRLE+AE + +P Q + ++W+T
Sbjct: 412 KEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQ-PDGIIWKT 469
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 109/239 (45%), Gaps = 25/239 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +S L+++C+ L G Q+H++ G +++ L + Y LG K S LF
Sbjct: 61 DPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLF 120
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
+P RN++++N++I G + W +I G ++ + +AL+
Sbjct: 121 SNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALS 180
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF+ M + P E T+ +VL + Q +H K GF + V + L
Sbjct: 181 LFKEMYGLGFL-PDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSV-VGSSLAHM 238
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
Y K G + KL + + + +V+W T+I+G A +G +E + + M+ G +P++
Sbjct: 239 YIKSGSLSDGEKLIKSMPI--RTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDK 295
>gi|449467271|ref|XP_004151347.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
gi|449530724|ref|XP_004172343.1| PREDICTED: pentatricopeptide repeat-containing protein At2g42920,
chloroplastic-like [Cucumis sativus]
Length = 543
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 156/309 (50%), Gaps = 37/309 (11%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
TY + + L + G QLH K+G Q ++ + MY + GFL ++ ++F++
Sbjct: 125 LTYPSIFKAYSQLGLAHDGAQLHGRIIKLGLQFDPFIRNTILYMYATGGFLSEARRIFNQ 184
Query: 85 LPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALALF 123
E ++V+WN +I GL K W +I GY R EAL LF
Sbjct: 185 EMEFDVVSWNSMILGLAKCGEIDESRKLFDKMPVKNPISWNSMIGGYVRNGMFKEALKLF 244
Query: 124 RRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183
+M E +PSE T++++L A + G +R IH Y +K I V+ +ID Y
Sbjct: 245 IKMQE-ERIQPSEFTMVSLLNASAQIGALRQGVWIHEYIKKNNLQLNAIVVT-AIIDMYC 302
Query: 184 KCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN---- 239
KCG I +A ++FE + ++L SW ++I G A++G KEA+ F+ ++ LKP+
Sbjct: 303 KCGSIGNALQVFE--KIPCRSLSSWNSMIFGLAVNGCEKEAILVFKMLESSSLKPDCISF 360
Query: 240 -------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+ +EG++FF +M + P IKHY ++D++ RAG LE+AE+ +P
Sbjct: 361 MAVLTACNHGAMVDEGMEFFSRMKNTYRIEPSIKHYNLMVDMISRAGFLEEAEQFIKTMP 420
Query: 293 SQITNVVVW 301
+ + ++W
Sbjct: 421 IE-KDAIIW 428
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 129/309 (41%), Gaps = 57/309 (18%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVS-LGFLKDSSKLFDELPERNLVTWNVIITGLVKW 103
Q HA K G + + + S LG + + +F ++ NL +WN +I
Sbjct: 42 QFHAHLIKSGQAIESFAASRILAFCASPLGNMDYAYLVFLQMQNPNLFSWNTVI------ 95
Query: 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGE 163
G+S+ + AL LF M EP +T ++ A + G + +HG
Sbjct: 96 ----RGFSQSSNPQIALYLFIDMLVSSQVEPQRLTYPSIFKAYSQLGLAHDGAQLHGRII 151
Query: 164 KRG---------------------------FNA---FDIHVSNCLIDTYAKCGCIFSASK 193
K G FN FD+ N +I AKCG I + K
Sbjct: 152 KLGLQFDPFIRNTILYMYATGGFLSEARRIFNQEMEFDVVSWNSMILGLAKCGEIDESRK 211
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP---------NRSWRI 244
LF+ V KN +SW ++I G+ +GM KEA++ F +MQ+ ++P N S +I
Sbjct: 212 LFDKMPV--KNPISWNSMIGGYVRNGMFKEALKLFIKMQEERIQPSEFTMVSLLNASAQI 269
Query: 245 G--EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
G +G+ + + +++ + + +ID+ + G + A +V IP + ++ W
Sbjct: 270 GALRQGV-WIHEYIKKNNLQLNAIVVTAIIDMYCKCGSIGNALQVFEKIPCR--SLSSWN 326
Query: 303 TGFLRLLIN 311
+ L +N
Sbjct: 327 SMIFGLAVN 335
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 23/214 (10%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
FT L+ + G +H K Q + V TA+ DMY G + ++ ++F++
Sbjct: 257 FTMVSLLNASAQIGALRQGVWIHEYIKKNNLQLNAIVVTAIIDMYCKCGSIGNALQVFEK 316
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+P R+L +WN +I GL ++G + EA+ +F +M +P I+ +AVL
Sbjct: 317 IPCRSLSSWNSMIFGLA-----VNGCEK-----EAILVF-KMLESSSLKPDCISFMAVLT 365
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS----NCLIDTYAKCGCIFSASKLFEDTSV 200
A V R N + I S N ++D ++ G + A + + +
Sbjct: 366 ACNHGAMVDEGMEFF----SRMKNTYRIEPSIKHYNLMVDMISRAGFLEEAEQFIKTMPI 421
Query: 201 DRKNLVSWTTIISGFAMHG---MGKEAVENFERM 231
+ K+ + W ++S ++G M K A E +
Sbjct: 422 E-KDAIIWGCLLSACRIYGNTEMAKRAAEKVNEL 454
>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
Length = 708
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 145/275 (52%), Gaps = 31/275 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ ++ C L G ++HA GF +V V ++L DMY G + +S ++F
Sbjct: 321 DGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIF 380
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE-YTEPSEITILA 141
D +P +N V+ W+ ++ GY + + +FR+M + Y + + A
Sbjct: 381 DRMPIKNSVS----------WSALLGGYCQNGDFKSVIQIFRKMEKVDLYCFGTILRTCA 430
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A+ + EV +CQ I G + D+ V + L+D YAKCGCI A +F+ V
Sbjct: 431 GLAAVRQGKEV-HCQYIRKGGWR------DVIVESALVDLYAKCGCIEYAQTIFDQMPV- 482
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
+NL++W ++I GFA +G G+EA+ F +M K G+KP+ IG +EG +
Sbjct: 483 -RNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGRE 541
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAE 285
+F M ++ + I+HY C++D+L RAG LE+AE
Sbjct: 542 YFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAE 576
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 133/287 (46%), Gaps = 21/287 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++FT S +I+ C L LG H V GF S+ + +AL DM+ L D+ +LF
Sbjct: 219 NAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLF 278
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DEL E + + W II+ L +R + +EAL F M P T V
Sbjct: 279 DELLEPDAICWTSIISAL----------TRNDFFDEALRFFYSMQRDHGMCPDGFTFGTV 328
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G ++ + +H GF ++ V + L+D Y KCG + + ++F+ +
Sbjct: 329 LTACGNLGRLKQGKEVHAKVITTGFCG-NVVVESSLVDMYGKCGSVGESQRIFDRMPI-- 385
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVE-ECEV 261
KN VSW+ ++ G+ +G K ++ F +M+KV L + GL + E C+
Sbjct: 386 KNSVSWSALLGGYCQNGDFKSVIQIFRKMEKVDLYCFGTILRTCAGLAAVRQGKEVHCQY 445
Query: 262 L-----PDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ D+ L+D+ + G +E A+ + +P + N++ W +
Sbjct: 446 IRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMP--VRNLITWNS 490
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 138/302 (45%), Gaps = 44/302 (14%)
Query: 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP 86
Y+ L++TC + N G Q+HA K G + +V +L +Y LG + P
Sbjct: 121 YASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLG---------TDFP 171
Query: 87 ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI 146
E V + + ++ WT +I GY R+ + +L LF +M A EP+ T+ AV+ A
Sbjct: 172 ETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLA-YGVEPNAFTLSAVIKAC 230
Query: 147 WKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLV 206
+ G+++ ++ HG RGF++ + +++ LID + + + A +LF++ + + +
Sbjct: 231 SELGDLKLGRIFHGVVLGRGFDS-NYVIASALIDMHGRNCALDDARQLFDE--LLEPDAI 287
Query: 207 SWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIK 266
WT+IIS + EA L+FF M + + PD
Sbjct: 288 CWTSIISALTRNDFFDEA------------------------LRFFYSMQRDHGMCPDGF 323
Query: 267 HYGCLIDILERAGRLEQAEEVASGIPSQ--ITNVVVWRTGFLRLLINSYFFSPITLNSQR 324
+G ++ GRL+Q +EV + + + NVVV + L++ Y SQR
Sbjct: 324 TFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESS-----LVDMYGKCGSVGESQR 378
Query: 325 LF 326
+F
Sbjct: 379 IF 380
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 22/195 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D + + ++RTC L+ G ++H + + G V V +AL D+Y G ++ + +F
Sbjct: 418 DLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIF 477
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++P RNL+TWN +I G+++ R EAL +F +M E +P I+ + +
Sbjct: 478 DQMPVRNLITWN----------SMIGGFAQNGRGEEALRIFNQMVK-EGIKPDYISFIGI 526
Query: 143 LPAIWKNGEVRNCQ-----LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
L A G V + + YG K G + +C++D + G + A L E
Sbjct: 527 LFACSHRGLVDEGREYFISMTKDYGIKVGIEHY-----SCMVDLLGRAGLLEEAEILIE- 580
Query: 198 TSVDRKNLVSWTTII 212
TS R + W ++
Sbjct: 581 TSDFRDDSSLWAALL 595
>gi|357484833|ref|XP_003612704.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514039|gb|AES95662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 572
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 152/292 (52%), Gaps = 25/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FTY F+++ C L + G Q+H K+G + V V +L +MY G +K++ +F
Sbjct: 97 DKFTYPFVLKACSLLGVVDEGIQVHGHVFKMGLEGDVIVQNSLINMYGKCGEIKNACDVF 156
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + E+++ + W+ II ++ + NE L L +M++ E T++ V
Sbjct: 157 NGMDEKSVAS----------WSAIIGAHACVEMWNECLMLLGKMSSEGRCRVEESTLVNV 206
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + IHG R + ++ V LID Y K GC+ ++F++ S
Sbjct: 207 LSACTHLGSPDLGKCIHGI-LLRNISELNVVVKTSLIDMYVKSGCLEKGLRVFKNMS--E 263
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN S+T +ISG A+HG GKEA++ F M + GL P+ +G EEGL+
Sbjct: 264 KNRYSYTVMISGLAIHGRGKEALKVFSEMIEEGLAPDDVVYVGVFSACSHAGLVEEGLQC 323
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F M E ++ P ++HYGC++D+L R G L++A E+ + + N V+WR+
Sbjct: 324 FKSMQFEHKIEPTVQHYGCMVDLLGRFGMLKEAYELIKSMSIK-PNDVIWRS 374
>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
Length = 714
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 153/281 (54%), Gaps = 25/281 (8%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
++ C + + G LH V K+G V +L +MY LGFL +S+LF+E+P R+
Sbjct: 247 VVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRS 306
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
LV+WN ++ +I ++ + + + LF M P + T++A+L A
Sbjct: 307 LVSWNSMV--------VIHNHN--GYAEKGMDLFNLMKRAGIN-PDQATMVALLRACTDT 355
Query: 150 GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWT 209
G R + IH Y + GFNA DI ++ L++ YAK G + ++ +FE+ + ++ ++WT
Sbjct: 356 GLGRQAESIHAYIHRCGFNA-DIIIATALLNLYAKLGRLNASEDIFEE--IKDRDTIAWT 412
Query: 210 TIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKFFDKMVEE 258
+++G+A+H G+EA++ F+ M K G++ + + EEG K+F+ M E
Sbjct: 413 AMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEV 472
Query: 259 CEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVV 299
V P + HY C++D+L R+GRLE A E+ +P + ++ V
Sbjct: 473 YRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGV 513
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 143/293 (48%), Gaps = 30/293 (10%)
Query: 21 LFDSFTYS--FLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
L DS S F I +C ++SY + +HA K S ++ L MY LG+ +D+
Sbjct: 137 LADSIVQSLVFAISSCTSVSYC---SAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDA 193
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
+LFDE+P R+LV+WN +++GL S L F RM +P+E+T
Sbjct: 194 QRLFDEMPNRDLVSWNSLMSGL----------SGRGYLGACLNAFCRMRTESGRQPNEVT 243
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+L+V+ A G + + +HG K G + V N LI+ Y K G + +AS+LFE+
Sbjct: 244 LLSVVSACAXMGALDEGKSLHGVVVKLGMSG-KAKVVNSLINMYGKLGFLDAASQLFEEM 302
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG------EEGL--- 249
V ++LVSW +++ +G ++ ++ F M++ G+ P+++ + + GL
Sbjct: 303 PV--RSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQ 360
Query: 250 -KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ + C DI L+++ + GRL +E++ I + T + W
Sbjct: 361 AESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDT--IAW 411
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 39/221 (17%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T L+R C +HA + GF + + + TAL ++Y LG L S +F
Sbjct: 341 DQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIF 400
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+ +R+ + WT ++ GY+ EA+ LF M E E +T +
Sbjct: 401 EEIKDRDTIA----------WTAMLAGYAVHACGREAIKLFDLMVK-EGVEVDHVTFTHL 449
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDI------------HVSNCLIDTYAKCGCIFS 190
L A +G V + G F+I H S C++D + G +
Sbjct: 450 LSACSHSGLV-----------EEGKKYFEIMSEVYRVEPRLDHYS-CMVDLLGRSGRLED 497
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENF 228
A +L + ++ + V W ++ ++G +GKE E
Sbjct: 498 AYELIKSMPMEPSSGV-WGALLGACRVYGNVELGKEVAEQL 537
>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
Length = 814
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 151/294 (51%), Gaps = 30/294 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHA--VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
D FTY +++ C N G ++H + S++G S +V AL DMY G ++ + K
Sbjct: 413 DEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDS--FVGIALIDMYSKCGMMEKAEK 470
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
L D L E+ +V+WN II+ G+S +S EA F +M +P T
Sbjct: 471 LHDRLAEQTVVSWNAIIS----------GFSLQKQSEEAQKTFSKMLEMG-VDPDNFTYA 519
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+L V + IH K+ + D ++S+ L+D Y+KCG + +FE
Sbjct: 520 TILDTCANLVTVELGKQIHAQIIKKELQS-DAYISSTLVDMYSKCGNMQDFQLIFEKAP- 577
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
++ V+W ++ G+A HG+G+EA++ FE MQ +KPN + + E+GL
Sbjct: 578 -NRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLVEKGL 636
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+F M+ + P ++HY C++DI+ R+G++ +A E+ G+P + + V+WRT
Sbjct: 637 HYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFE-ADAVIWRT 689
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 95/198 (47%), Gaps = 14/198 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FTY+ ++ TC L LG Q+HA K QS Y+++ L DMY G ++D +F
Sbjct: 514 DNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNMQDFQLIF 573
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++ P R+ VTWN ++ GY++ EAL +F M E +P+ T LAV
Sbjct: 574 EKAPNRDFVTWNAMVC----------GYAQHGLGEEALKIFEYMQL-ENVKPNHATFLAV 622
Query: 143 LPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G V + H G + H S C++D + G + A +L E +
Sbjct: 623 LRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYS-CVVDIMGRSGQVSKALELIEGMPFE 681
Query: 202 RKNLVSWTTIISGFAMHG 219
+ V W T++S +HG
Sbjct: 682 -ADAVIWRTLLSXCKIHG 698
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 107/223 (47%), Gaps = 24/223 (10%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D + S R C + G Q+H + K QS++ V A+ DMY G L ++ +
Sbjct: 311 LDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLV 370
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+E+ R+ V+WN II + + + L+LF M EP E T +
Sbjct: 371 FEEMVSRDAVSWNAIIA----------AHEQNGNEEKTLSLFVWMLQ-SGMEPDEFTYGS 419
Query: 142 VLPAI--WKNGEVRNCQL-IHG--YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
VL A W + NC + IH + G ++F V LID Y+KCG + A KL +
Sbjct: 420 VLKACAGW---QALNCGMEIHNRIIKSRMGLDSF---VGIALIDMYSKCGMMEKAEKLHD 473
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+ + +VSW IISGF++ +EA + F +M ++G+ P+
Sbjct: 474 --RLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPD 514
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 83/382 (21%), Positives = 150/382 (39%), Gaps = 103/382 (26%)
Query: 18 LPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV------- 70
+ +FD T++ ++++C +L G Q+H + K+GF V +AL DMY
Sbjct: 152 MGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQND 211
Query: 71 ----SLGFLKDSSK-------------------------------------------LFD 83
L K+ K LF+
Sbjct: 212 DLRGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFN 271
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
LP NL ++N II GY+R ++ EAL +FR + + S + L
Sbjct: 272 SLPNHNLQSYNAIIV----------GYARSDKGIEALGMFRLL------QKSGLG----L 311
Query: 144 PAIWKNGEVRNCQLIHGYGEK--------RGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
+ +G R C +I G E + +I V+N ++D Y KCG + A +F
Sbjct: 312 DEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVF 371
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRI 244
E+ ++ VSW II+ +G ++ + F M + G++P+ W+
Sbjct: 372 EEMV--SRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQA 429
Query: 245 GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTG 304
G++ +++++ L LID+ + G +E+AE++ + Q VV W
Sbjct: 430 LNCGMEIHNRIIKSRMGLDSFVGIA-LIDMYSKCGMMEKAEKLHDRLAEQ--TVVSWNA- 485
Query: 305 FLRLLINSYFFSPITLNSQRLF 326
+I+ + + +Q+ F
Sbjct: 486 ----IISGFSLQKQSEEAQKTF 503
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 103/271 (38%), Gaps = 65/271 (23%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T+S + + C G Q HA F+ V+V L MY+ L + K+FD +
Sbjct: 44 TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGM 103
Query: 86 PERNLVTWNVIITGLV-----------------KWTGIIDGYS-RMNRSNEALALFRR-- 125
P+R+ V+WN ++ G G+++ + RM R +F R
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMG---TVFDRTT 160
Query: 126 ----MAACEYTEPS----EITILAV-------------LPAIWKNGEVRNCQLIHGYG-- 162
+ +C E +I LAV L ++ V+N L G
Sbjct: 161 FAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELF 220
Query: 163 ---EKRGFNAFDIH-------------VSNCLIDTYAKCGCIFSAS-KLFEDTSVDRKNL 205
+K G A +H + +D Y KC + S +LF S+ NL
Sbjct: 221 KEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLF--NSLPNHNL 278
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
S+ II G+A G EA+ F +QK GL
Sbjct: 279 QSYNAIIVGYARSDKGIEALGMFRLLQKSGL 309
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
+ V+NCLI Y KC + A K+F+ + +++ VSW ++ G+A G A + F+ M
Sbjct: 77 VFVTNCLIQMYIKCSDLGFAFKVFD--GMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAM 134
Query: 232 QKVGLKPNR--SWRIGEEGLKF----FDKMVEECEVLPD 264
G +R+G G F F +++ C L D
Sbjct: 135 PGTGCGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLED 173
>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 755
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 152/277 (54%), Gaps = 16/277 (5%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ +T + ++ C + +LG Q+H++ K+G+ S + + ++ +Y+ G+L ++ KLF
Sbjct: 265 NEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLF 324
Query: 83 DELPERNLVTWNVIITGLVKWTGII-DGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
+ + NLVTWN +I G K + D + + ALA+F+++ +P T +
Sbjct: 325 EGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSG-MKPDLFTFSS 383
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL + + IHG K G A D+ V L+ Y KCG I ASK F + +
Sbjct: 384 VLSVCSNLVALEQGEQIHGQIIKSGVLA-DVVVGTALVSMYNKCGSIDKASKAFLE--MP 440
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
+ ++SWT++I+GFA HG+ ++A++ FE M+ VG+KPN+ +G +E L
Sbjct: 441 SRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALY 500
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+F+ M ++ + P + H+ CLID+ R GR+E+A +V
Sbjct: 501 YFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDV 537
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 101/220 (45%), Gaps = 16/220 (7%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
+S Y L++ C+ + +H K GF ++V T L ++Y G ++ + K+
Sbjct: 62 IESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKV 121
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM-AACEYTEPSEITIL 140
FD LP RN+ W ++T GY + + AL LF +M A Y PS T+
Sbjct: 122 FDNLPRRNVNAWTTLLT----------GYVQNSHPLLALQLFIKMLEAGAY--PSNYTLG 169
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
VL A + + +H Y K + FD + N L Y+K + A K F+ +
Sbjct: 170 IVLNACSSLQSIEFGKQVHAYLIKYHID-FDTSIGNSLSSFYSKFRRLEFAIKAFK--II 226
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
K+++SWT++IS +G ++ F M G+KPN
Sbjct: 227 KEKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNE 266
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 107/233 (45%), Gaps = 23/233 (9%)
Query: 8 QQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGD 67
Q++Y P D FT+S ++ C L G Q+H K G + V V TAL
Sbjct: 367 QKLYRSGMKP-----DLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVS 421
Query: 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA 127
MY G + +SK F E+P R +++ WT +I G++R S +AL LF M
Sbjct: 422 MYNKCGSIDKASKAFLEMPSRTMIS----------WTSMITGFARHGLSQQALQLFEDMR 471
Query: 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDI--HVSNCLIDTYAKC 185
+P+++T + VL A G + + L + ++ +N + H + CLID Y +
Sbjct: 472 LVG-IKPNQVTFVGVLSACSHAG-LADEALYYFELMQKQYNIKPVMDHFA-CLIDMYLRL 528
Query: 186 GCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
G + A + + + N W+ +I+G H GK + + Q + LKP
Sbjct: 529 GRVEEAFDVVHKMNFE-PNETIWSMLIAGCRSH--GKSDLGFYAAEQLLKLKP 578
>gi|356529920|ref|XP_003533534.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g15300-like [Glycine max]
Length = 555
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/354 (28%), Positives = 168/354 (47%), Gaps = 73/354 (20%)
Query: 14 SHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTAL-------G 66
+H + P D+FT+ +++ C L + N G+ +H ++GF S+V V L G
Sbjct: 99 THRSVKP--DNFTFPLVLKACTKLFWVNTGSVVHGRVFRLGFGSNVVVRNTLLVFHAKCG 156
Query: 67 DMYVSLGFLKDSSK------------------------LFDELPERNLVTWNVIITG--- 99
D+ V+ DS K LFDE+P+R+LV+WNV+IT
Sbjct: 157 DLKVANDIFDDSDKGDVVAWSALIAGYAQRGDLSVARKLFDEMPKRDLVSWNVMITAYTK 216
Query: 100 ------------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE-PSEITIL 140
+V W ++ GY N + EAL LF M CE E P E+T+L
Sbjct: 217 HGEMECARRLFDEAPMKDVVSWNAMVGGYVLHNLNQEALELFDEM--CEVGECPDEVTML 274
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
++L A G+ + +H + + N L+D YAKCG I +F +
Sbjct: 275 SLLSACADLGDXG--EKVHAKIMELNKGKLSTLLGNALVDMYAKCGNIGKGVCVF--WLI 330
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
K++VSW ++I G A HG +E++ F MQ+ + P+ +G +EG
Sbjct: 331 RDKDMVSWNSVIGGLAFHGHAEESLGLFREMQRTKVCPDEITFVGVLAACSHTGNVDEGN 390
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++F M + ++ P+I+H GC++D+L RAG L++A + + + + N +VWR+
Sbjct: 391 RYFYLMKNKYKIEPNIRHCGCVVDMLARAGLLKEAFDFIASMKIE-PNAIVWRS 443
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 104/214 (48%), Gaps = 27/214 (12%)
Query: 41 NLGT--QLHAVF------SKVGFQSHVYVNTALGDM--YVSLGFLKDSSKLFDELPERNL 90
NLGT Q+HA+ S VGF + + TA+ + + + + ++F ++P+ +
Sbjct: 13 NLGTLRQIHALMIVNGFTSNVGFLRKLVLTTAMSMVGPAATTAVTQYAVQMFAQIPQPDT 72
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
WN I G S+ + A+AL+ +M +P T VL A K
Sbjct: 73 FMWNTYIR----------GSSQSHDPVHAVALYAQMTH-RSVKPDNFTFPLVLKACTKLF 121
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
V ++HG + GF + ++ V N L+ +AKCG + A+ +F+D+ D+ ++V+W+
Sbjct: 122 WVNTGSVVHGRVFRLGFGS-NVVVRNTLLVFHAKCGDLKVANDIFDDS--DKGDVVAWSA 178
Query: 211 IISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI 244
+I+G+A G A + F+ M K L SW +
Sbjct: 179 LIAGYAQRGDLSVARKLFDEMPKRDLV---SWNV 209
>gi|357130868|ref|XP_003567066.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Brachypodium distachyon]
Length = 433
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 150/296 (50%), Gaps = 28/296 (9%)
Query: 23 DSFTYSFLIRTCVTLSYP--NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
D +T+ ++ P +L Q HA +K G H + +AL Y G L + +
Sbjct: 83 DRYTFPLALKAAAQGEPPISSLRRQFHAAAAKRGLARHPFTESALISCYSKAGDLDAARR 142
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FDE P R L +WN II+GL S+ S E LALF +M C P ++T++
Sbjct: 143 VFDENPHRGLGSWNAIISGL----------SQAGESKEPLALFVKMRRCGVV-PDDLTMV 191
Query: 141 AVLPAIWKNGEVRNCQLIHGYG-EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+++ + G++ + +H + + + D+ +SN LID YAKCG A ++FE
Sbjct: 192 SLVSSCCAVGDIGLVEQLHKCMLQCKHSSRLDVTLSNALIDMYAKCGRTDLAGRVFERMP 251
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
+ +++ SWTT+I+G A HG + A++ F+ M+ G+ PNR + + G
Sbjct: 252 L--RDVSSWTTMITGLATHGEEQRALKKFDEMKSEGVPPNRVTMLAVLSACAHRGLVDTG 309
Query: 249 LKFFDKMVE-ECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ +M + E +V P ++HYGCL+D+L R G ++ A + NVV+W T
Sbjct: 310 MGLLKQMEDGEIKVAPTVEHYGCLVDLLGRVGWVDDARALVEHRMPMEANVVIWGT 365
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 91/221 (41%), Gaps = 27/221 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSH--VYVNTALGDMYVSLGFLKDSSK 80
D T L+ +C + L QLH + S V ++ AL DMY G + +
Sbjct: 186 DDLTMVSLVSSCCAVGDIGLVEQLHKCMLQCKHSSRLDVTLSNALIDMYAKCGRTDLAGR 245
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F+ +P R++ +W +ITGL + AL F M + E P+ +T+L
Sbjct: 246 VFERMPLRDVSSWTTMITGL----------ATHGEEQRALKKFDEMKS-EGVPPNRVTML 294
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS------NCLIDTYAKCGCIFSASKL 194
AVL A G V G G + +I V+ CL+D + G + A L
Sbjct: 295 AVLSACAHRGLVDT-----GMGLLKQMEDGEIKVAPTVEHYGCLVDLLGRVGWVDDARAL 349
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQ 232
E N+V W T++ HG +G+ A E + +
Sbjct: 350 VEHRMPMEANVVIWGTLLGACEKHGNVSVGEWAAERLQEAE 390
>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 604
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 106/372 (28%), Positives = 166/372 (44%), Gaps = 95/372 (25%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF--LKDSSK 80
D+FTY FL++ C S L +HA K GF ++V +L D Y G L +
Sbjct: 119 DNFTYPFLLKACTGPSSLPLVRMIHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMS 178
Query: 81 LFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEA 119
LF + ER++VTWN +I GLV+ W ++DGY++ + A
Sbjct: 179 LFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDEMPERDMVSWNTMLDGYAKAGEMDRA 238
Query: 120 LALFRRMA----------ACEYTEPSEITILAVL----PA----IW--------KNGEVR 153
LF RM C Y++ ++ + VL PA +W + G VR
Sbjct: 239 FELFERMPQRNIVSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEKGFVR 298
Query: 154 NCQLIHGYGEKRGFNAFD---------------------IHVS-------------NCLI 179
++G E+ G D IH S N I
Sbjct: 299 EATELYGKMEEAGLRPDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCGTKVLNAFI 358
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D YAKCGC+ +A +F + +K++VSW ++I GFAMHG G++A+E F RM G +P+
Sbjct: 359 DMYAKCGCLDAAFDVFSGM-MAKKDVVSWNSMIQGFAMHGHGEKALELFSRMVPEGFEPD 417
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
+G EG K+F M + ++P ++HYGC++D+L R G L++A +
Sbjct: 418 TYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHLKEAFTLL 477
Query: 289 SGIPSQITNVVV 300
+P + +++
Sbjct: 478 RSMPMEPNAIIL 489
>gi|297818474|ref|XP_002877120.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297322958|gb|EFH53379.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 399
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/283 (31%), Positives = 146/283 (51%), Gaps = 26/283 (9%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
T+ FLI C ++G Q+H K G F S +V T + +YV L D+ K+FD
Sbjct: 12 LTFYFLIVACFKACLFSVGKQIHCWVVKNGVFLSDGHVQTGILRIYVEDKVLLDAHKVFD 71
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
E+P+ ++V W+V++ +GY R +E L +FR M EP E ++ L
Sbjct: 72 EIPKPDVVKWDVLM----------NGYVRCGLGSEGLEVFREMLV-RGVEPDEFSVTTAL 120
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
A + G + + IH + +K+ + D+ V L+D YAKCGCI A ++FE S R+
Sbjct: 121 TACAQVGALAQGKWIHEFVKKKRWIESDVFVGTALVDMYAKCGCIEMAVEVFEKLS--RR 178
Query: 204 NLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNRSWRIG-----------EEGLKF 251
N+ SW +I G+A +G K+A+ +RM++ G+KP+ +G +EG
Sbjct: 179 NVFSWAALIGGYAAYGYAKKAMTCLDRMEREDGIKPDSVVLLGVLAACAHGGFLQEGRAM 238
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
M + P +HY C++D++ RAGRL+ A ++ +P +
Sbjct: 239 LGNMEARYGITPKHEHYSCIVDLMCRAGRLDDALDLIEKMPMK 281
>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Vitis vinifera]
Length = 633
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 145/275 (52%), Gaps = 31/275 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ ++ C L G ++HA GF +V V ++L DMY G + +S ++F
Sbjct: 262 DGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIF 321
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE-YTEPSEITILA 141
D +P +N V+ W+ ++ GY + + +FR+M + Y + + A
Sbjct: 322 DRMPIKNSVS----------WSALLGGYCQNGDFKSVIQIFRKMEKVDLYCFGTILRTCA 371
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A+ + EV +CQ I G + D+ V + L+D YAKCGCI A +F+ V
Sbjct: 372 GLAAVRQGKEV-HCQYIRKGGWR------DVIVESALVDLYAKCGCIEYAQTIFDQMPV- 423
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
+NL++W ++I GFA +G G+EA+ F +M K G+KP+ IG +EG +
Sbjct: 424 -RNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRGLVDEGRE 482
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAE 285
+F M ++ + I+HY C++D+L RAG LE+AE
Sbjct: 483 YFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAE 517
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 133/287 (46%), Gaps = 21/287 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++FT S +I+ C L LG H V GF S+ + +AL DM+ L D+ +LF
Sbjct: 160 NAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLF 219
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DEL E + + W II+ L +R + +EAL F M P T V
Sbjct: 220 DELLEPDAICWTSIISAL----------TRNDFFDEALRFFYSMQRDHGMCPDGFTFGTV 269
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G ++ + +H GF ++ V + L+D Y KCG + + ++F+ +
Sbjct: 270 LTACGNLGRLKQGKEVHAKVITTGFCG-NVVVESSLVDMYGKCGSVGESQRIFDRMPI-- 326
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVE-ECEV 261
KN VSW+ ++ G+ +G K ++ F +M+KV L + GL + E C+
Sbjct: 327 KNSVSWSALLGGYCQNGDFKSVIQIFRKMEKVDLYCFGTILRTCAGLAAVRQGKEVHCQY 386
Query: 262 L-----PDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ D+ L+D+ + G +E A+ + +P + N++ W +
Sbjct: 387 IRKGGWRDVIVESALVDLYAKCGCIEYAQTIFDQMP--VRNLITWNS 431
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 138/302 (45%), Gaps = 44/302 (14%)
Query: 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP 86
Y+ L++TC + N G Q+HA K G + +V +L +Y LG + P
Sbjct: 62 YASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLG---------TDFP 112
Query: 87 ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI 146
E V + + ++ WT +I GY R+ + +L LF +M A EP+ T+ AV+ A
Sbjct: 113 ETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYG-VEPNAFTLSAVIKAC 171
Query: 147 WKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLV 206
+ G+++ ++ HG RGF++ + +++ LID + + + A +LF++ + + +
Sbjct: 172 SELGDLKLGRIFHGVVLGRGFDS-NYVIASALIDMHGRNCALDDARQLFDE--LLEPDAI 228
Query: 207 SWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIK 266
WT+IIS + EA L+FF M + + PD
Sbjct: 229 CWTSIISALTRNDFFDEA------------------------LRFFYSMQRDHGMCPDGF 264
Query: 267 HYGCLIDILERAGRLEQAEEVASGIPSQ--ITNVVVWRTGFLRLLINSYFFSPITLNSQR 324
+G ++ GRL+Q +EV + + + NVVV + L++ Y SQR
Sbjct: 265 TFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESS-----LVDMYGKCGSVGESQR 319
Query: 325 LF 326
+F
Sbjct: 320 IF 321
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 92/195 (47%), Gaps = 22/195 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D + + ++RTC L+ G ++H + + G V V +AL D+Y G ++ + +F
Sbjct: 359 DLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKCGCIEYAQTIF 418
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++P RNL+TWN +I G+++ R EAL +F +M E +P I+ + +
Sbjct: 419 DQMPVRNLITWN----------SMIGGFAQNGRGEEALRIFNQMVK-EGIKPDYISFIGI 467
Query: 143 LPAIWKNGEVRNCQ-----LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
L A G V + + YG K G + +C++D + G + A L E
Sbjct: 468 LFACSHRGLVDEGREYFISMTKDYGIKVGIEHY-----SCMVDLLGRAGLLEEAEILIE- 521
Query: 198 TSVDRKNLVSWTTII 212
TS R + W ++
Sbjct: 522 TSDFRDDSSLWAALL 536
>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Brachypodium distachyon]
Length = 815
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/292 (30%), Positives = 148/292 (50%), Gaps = 27/292 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ +TY ++R C +L GTQ+HA K G Q+ V+ L DMY G + +F
Sbjct: 453 NKYTYVSVLRCCTSLMNLRFGTQVHACILKSGLQNDTDVSRMLVDMYAQSGCFTSACLVF 512
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++L ER+ +W VI++ GY++ + + + FR M E PS+ T+
Sbjct: 513 EQLKERDAFSWTVIMS----------GYAKTEEAEKVVEYFRSMLR-ENIRPSDATLAVS 561
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + + +H + K G+N+ VS L+D Y KCG I A LF ++ +
Sbjct: 562 LSVCSDMASLGSGLQLHSWAIKSGWNSSV--VSGALVDMYVKCGNIADAEMLFHES--ET 617
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
++ V+W TII G++ HG G +A++ F++M G +P+ +G EG K+
Sbjct: 618 RDQVAWNTIICGYSQHGHGYKALDAFKQMVDEGKRPDGITFVGVLSACSHAGLLNEGRKY 677
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F + + P ++HY C++DIL +AGRL +AE + + +P + +WRT
Sbjct: 678 FKSLSSIYGITPTMEHYACMVDILSKAGRLVEAESLINQMP-LAPDSSIWRT 728
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 111/228 (48%), Gaps = 16/228 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT + +++ C S+ Q+H K+ YV ++L + Y S G L + +
Sbjct: 150 NGFTLASVLKACSGGSHSKFTHQVHGQVVKLNGLDDPYVGSSLVEAYTSCGELDAAETVL 209
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
LPER+ V+WN +++GY+R + + ++ A E S+ T+ V
Sbjct: 210 LGLPERSDVSWN----------ALLNGYARHGDYRRVMIIIEKLVA-SGDEISKYTLPTV 258
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED-TSVD 201
L + G + Q +H KRG ++ +++CL++ Y++C SA + +E +D
Sbjct: 259 LKCCMELGLAKYGQSVHASVIKRGLETDNV-LNSCLVEMYSRC---LSAEEAYEVFIRID 314
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGL 249
++V + +IS F H M EA++ F +M +G+KPN +G G+
Sbjct: 315 EPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGV 362
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 98/199 (49%), Gaps = 14/199 (7%)
Query: 41 NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGL 100
NL +HA K GF V A+ +MYV +G ++D++ FD + E + +WN I++
Sbjct: 370 NLCRSVHAYIVKSGFAMLKGVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSAF 429
Query: 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHG 160
YS N + L +F++M ACE ++ T ++VL +R +H
Sbjct: 430 ---------YSGSN-CEQGLRIFKQM-ACEGFSANKYTYVSVLRCCTSLMNLRFGTQVHA 478
Query: 161 YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGM 220
K G D VS L+D YA+ GC SA +FE + ++ SWT I+SG+A
Sbjct: 479 CILKSGLQN-DTDVSRMLVDMYAQSGCFTSACLVFE--QLKERDAFSWTVIMSGYAKTEE 535
Query: 221 GKEAVENFERMQKVGLKPN 239
++ VE F M + ++P+
Sbjct: 536 AEKVVEYFRSMLRENIRPS 554
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 97/210 (46%), Gaps = 16/210 (7%)
Query: 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP 86
++ ++ C G +LHA + ++ +L +MY G L D+ ++FD +P
Sbjct: 53 HAAALQDCAVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMP 112
Query: 87 ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI 146
R++V WT +I ++ S++AL +F RM E P+ T+ +VL A
Sbjct: 113 HRDIVA----------WTAMISAHTAAGDSDQALDMFARMNQ-EGIAPNGFTLASVLKAC 161
Query: 147 WKNGEVRNCQLIHGYGEK-RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
+ +HG K G + D +V + L++ Y CG + +A + + ++
Sbjct: 162 SGGSHSKFTHQVHGQVVKLNGLD--DPYVGSSLVEAYTSCGELDAAETVL--LGLPERSD 217
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVG 235
VSW +++G+A HG + + E++ G
Sbjct: 218 VSWNALLNGYARHGDYRRVMIIIEKLVASG 247
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 98/216 (45%), Gaps = 14/216 (6%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
+T +++ C+ L G +HA K G ++ +N+ L +MY +++ ++F
Sbjct: 253 YTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEAYEVFIR 312
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ E ++V + +I + R + + EAL LF +M+ +P+ + +
Sbjct: 313 IDEPDVV----------HCSAMISCFDRHDMAWEALDLFVKMSGMG-VKPNHYIFVGIAG 361
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
+ G+ C+ +H Y K GF A V + +++ Y K G + A+ F+ + +
Sbjct: 362 VASRTGDANLCRSVHAYIVKSGF-AMLKGVGDAILNMYVKVGAVQDATVTFD--LIHEPD 418
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
SW TI+S F ++ + F++M G N+
Sbjct: 419 TFSWNTILSAFYSGSNCEQGLRIFKQMACEGFSANK 454
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 21/154 (13%)
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
D + + L++ Y KCG + A ++F+ + +++V+WT +IS G +A++ F R
Sbjct: 84 DTFLLDSLLNMYCKCGRLVDARRVFD--GMPHRDIVAWTAMISAHTAAGDSDQALDMFAR 141
Query: 231 MQKVGLKPN--------RSWRIGEEGLKFFDKM---VEECEVLPDIKHYGCLIDILERAG 279
M + G+ PN ++ G KF ++ V + L D L++ G
Sbjct: 142 MNQEGIAPNGFTLASVLKACSGGSHS-KFTHQVHGQVVKLNGLDDPYVGSSLVEAYTSCG 200
Query: 280 RLEQAEEVASGIPSQITNVVVWRTGFLRLLINSY 313
L+ AE V G+P + + V W L+N Y
Sbjct: 201 ELDAAETVLLGLPER--SDVSWNA-----LLNGY 227
>gi|357501421|ref|XP_003620999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124365545|gb|ABN09779.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355496014|gb|AES77217.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 601
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 164/322 (50%), Gaps = 42/322 (13%)
Query: 20 PLFDSFTYSFLIR-TCVTLSYPNLGTQLHA--VFSKVGFQSHVYVNTALGDMYVSLGFLK 76
+FD + L+ T V + Y G + A +F + + N + D YV +G +
Sbjct: 179 KVFDEMSVRSLVSWTAVIVGYARCGDMVEARKLFDGMVDRDVAAFNVMI-DGYVKMGRMD 237
Query: 77 DSSKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNR 115
+ LFD++ +N+++W ++ G ++ W +I GY + R
Sbjct: 238 LARDLFDKMRVKNVISWTSMVHGYSEDGDVDEARFLFDCMPEKNVLSWNAMIRGYCQNGR 297
Query: 116 SNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS 175
S++AL LF M E +E+T+++VLPA+ + +HG+ ++ + +HV
Sbjct: 298 SHDALKLFCEMRGNVDVEMNEVTVVSVLPAVADLSALDLGGWVHGFVQRNQLDG-SVHVC 356
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
N L+D YAKCG I A +FE+ + K+ SW +I+G+ ++G KEA+E F M + G
Sbjct: 357 NALVDMYAKCGEIGKAKLVFEEMT--EKDTGSWNALINGYGVNGCAKEALEVFAMMLREG 414
Query: 236 LKPNR-----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
+PN+ + EEG + F+ M E ++P I+HYGC+ID+L RAGRL++A
Sbjct: 415 FEPNQITMTSVLSACNHCGLVEEGRRCFEAM-ERFGIVPQIEHYGCMIDLLGRAGRLDEA 473
Query: 285 EEVASGIPSQITNVVVWRTGFL 306
E++ +P +++ T FL
Sbjct: 474 EKLIQAMPYDPNEIIL--TSFL 493
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/201 (28%), Positives = 85/201 (42%), Gaps = 53/201 (26%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
S+T++ +++ C G Q+H V K F +YV T+L DMYV G + + K+FD
Sbjct: 123 SYTFTLILKGCSVSDAKRQGFQIHGVVLKNWFCLDLYVGTSLVDMYVKFGDVGFARKVFD 182
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
E+ R+LV+ WT +I GY+R EA LF M
Sbjct: 183 EMSVRSLVS----------WTAVIVGYARCGDMVEARKLFDGMV---------------- 216
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
R AF N +ID Y K G + A LF+ V K
Sbjct: 217 --------------------DRDVAAF-----NVMIDGYVKMGRMDLARDLFDKMRV--K 249
Query: 204 NLVSWTTIISGFAMHGMGKEA 224
N++SWT+++ G++ G EA
Sbjct: 250 NVISWTSMVHGYSEDGDVDEA 270
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 87/200 (43%), Gaps = 38/200 (19%)
Query: 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
II+ + + + N L+ + + + PS T +L + R IHG K
Sbjct: 93 IINAHFSLRQFNHGFTLYNQFSKDCFFRPSSYTFTLILKGCSVSDAKRQGFQIHGVVLKN 152
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225
F D++V L+D Y K G + A K+F++ SV ++LVSWT +I G+A
Sbjct: 153 WF-CLDLYVGTSLVDMYVKFGDVGFARKVFDEMSV--RSLVSWTAVIVGYA--------- 200
Query: 226 ENFERMQKVGLKPNRSWRIGE--EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQ 283
R G+ E K FD MV+ D+ + +ID + GR++
Sbjct: 201 -----------------RCGDMVEARKLFDGMVDR-----DVAAFNVMIDGYVKMGRMDL 238
Query: 284 AEEVASGIPSQITNVVVWRT 303
A ++ + ++ NV+ W +
Sbjct: 239 ARDLFDKM--RVKNVISWTS 256
>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 156/301 (51%), Gaps = 29/301 (9%)
Query: 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF 74
H+ L P + T L+ C N G Q+H+ K+GF + V +L MY
Sbjct: 395 HTGLVP--NDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSN 452
Query: 75 LKDSSKLFDELPER-NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE 133
L D+ ++F+++ + ++V+WN ++T ++ N++ E L L + M A +
Sbjct: 453 LNDALQVFEDIGNKADIVSWNTLLTACLQ----------QNQAGEVLRLTKLMFA-SRIK 501
Query: 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASK 193
P +T+ VL + + IH + K G N DI VSN LI+ Y KCG + A K
Sbjct: 502 PDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLN-LDISVSNALINMYTKCGSLECARK 560
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-------- 245
+F+ S+ +++SW+++I G+A G GKEA E F M+ +G+KPN +G
Sbjct: 561 MFD--SIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHI 618
Query: 246 ---EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
EEGLK + M E+ + P +H C++D+L RAG L+ AE+ +P + +VVVW+
Sbjct: 619 GMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIKQMPF-VPDVVVWK 677
Query: 303 T 303
T
Sbjct: 678 T 678
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 102/217 (47%), Gaps = 13/217 (5%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ ++++C L L QLHA K F + + AL MY + D+ +F
Sbjct: 198 DHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVF 257
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+II L+ W +I G+S++ EAL FR M + +P+E +
Sbjct: 258 SR----------IIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSA 307
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
A K E + IHG K G + D+ L D YAKCG + SA +F +++
Sbjct: 308 FSACSKLLEPDCGRQIHGLCIKFGLGS-DLFAGCSLCDMYAKCGFLESARTVF--YHIEK 364
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+LV+W II+GFA KE+ F +M+ GL PN
Sbjct: 365 PDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPN 401
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 136/295 (46%), Gaps = 33/295 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F + C L P+ G Q+H + K G S ++ +L DMY GFL+ + +F
Sbjct: 300 NEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVF 359
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + +LV WN II G++ ++ + E+ + F +M P+++T+L++
Sbjct: 360 YHIEKPDLVAWNAIIA----------GFASVSNAKESSSFFSQMRHTGLV-PNDVTVLSL 408
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + + + +H Y K GFN DI V N L+ Y+KC + A ++FED ++
Sbjct: 409 LCACSEPVMLNHGIQVHSYIVKMGFN-LDIPVCNSLLSMYSKCSNLNDALQVFEDIG-NK 466
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR--------------SWRIGEEG 248
++VSW T+++ E + + M +KP+ S+ +G +
Sbjct: 467 ADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQI 526
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F + + + DI LI++ + G LE A ++ I + +++ W +
Sbjct: 527 HCF----IMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGN--PDIISWSS 575
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 102/218 (46%), Gaps = 18/218 (8%)
Query: 14 SHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG 73
S SPL S TY+ LI C +L G ++H +Q + + + MY G
Sbjct: 92 SSSPL----KSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCG 147
Query: 74 FLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE 133
LK++ +FD +P +N+V+ WT +I GYSR + A+ L+ +M +
Sbjct: 148 SLKEARNMFDSMPLKNVVS----------WTSMISGYSRYGEEDNAITLYVQMLRSGHI- 196
Query: 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASK 193
P T +++ + + + + +H + K F A D+ N LI Y K + A
Sbjct: 197 PDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGA-DLIAQNALISMYTKFSQMADAIN 255
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
+F + K+L+SW ++I+GF+ G EA+ +F M
Sbjct: 256 VFSRIII--KDLISWGSMIAGFSQLGYELEALCHFREM 291
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 12/155 (7%)
Query: 112 RMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD 171
+ N EAL F C + +T ++ A + + + IH + + D
Sbjct: 74 KKNLHREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQP-D 132
Query: 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
+ + N ++ Y KCG + A +F+ S+ KN+VSWT++ISG++ +G A+ + +M
Sbjct: 133 MILQNHILSMYGKCGSLKEARNMFD--SMPLKNVVSWTSMISGYSRYGEEDNAITLYVQM 190
Query: 232 QKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIK 266
+ G P+ F +V+ C L D K
Sbjct: 191 LRSGHIPDHFT---------FGSIVKSCSGLDDFK 216
>gi|334187520|ref|NP_001190262.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
gi|223635618|sp|P0C8Q7.1|PP369_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08305
gi|332003897|gb|AED91280.1| pentatricopeptide repeat (PPR) family protein [Arabidopsis
thaliana]
Length = 534
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 149/314 (47%), Gaps = 46/314 (14%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D TY FL+++ LS LG LH K G + +++ L MY S + K
Sbjct: 105 LPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARK 164
Query: 81 LFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEA 119
LFDE+P +NLVTWN I+ +V W+ +IDGY + N+A
Sbjct: 165 LFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKA 224
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIH------ 173
L +F +M ++ +E+T+++V+ A G + + +H Y D+H
Sbjct: 225 LEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRY-------ILDVHLPLTVI 277
Query: 174 VSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
+ LID YAKCG I A +F SV + + W II G A HG +E+++ F +M++
Sbjct: 278 LQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRE 337
Query: 234 VGLKPNR-----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLE 282
+ P+ + +E FF K ++E P +HY C++D+L RAG ++
Sbjct: 338 SKIDPDEITFLCLLAACSHGGLVKEAWHFF-KSLKESGAEPKSEHYACMVDVLSRAGLVK 396
Query: 283 QAEEVASGIPSQIT 296
A + S +P + T
Sbjct: 397 DAHDFISEMPIKPT 410
>gi|356573508|ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
mitochondrial-like [Glycine max]
Length = 629
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 152/313 (48%), Gaps = 37/313 (11%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D + C L NL Q+H K GF H V + D YV G + ++ ++
Sbjct: 111 LDGVALICALGACSKLGDSNLVPQMHVGVVKFGFLRHTKVLNGVMDGYVKCGLVGEARRV 170
Query: 82 FDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEAL 120
F+E+ E ++V+W V++ G+VK WT +I GY + EA
Sbjct: 171 FEEIEEPSVVSWTVVLEGVVKCEGVESGKVVFDEMPERNEVAWTVLIKGYVGSGFTKEAF 230
Query: 121 ALFRRMA-ACEYT-EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
L + M C + + IT+ +VL A ++G+V + +H Y K + V L
Sbjct: 231 LLLKEMVFGCGFGFGLNSITLCSVLSACSQSGDVSVGRWVHCYAVKAVGWDLGVMVGTSL 290
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
+D YAKCG I +A +F + R+N+V+W ++ G AMHGMGK VE F M + +KP
Sbjct: 291 VDMYAKCGRISAALMVFRH--MPRRNVVAWNAMLCGLAMHGMGKVVVEMFACMVE-EVKP 347
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ + E+G ++F + + P+I+HY C++D+L RAGRLE+AE++
Sbjct: 348 DAVTFMALLSSCSHSGLVEQGWQYFHDLERAYGIRPEIEHYACMVDLLGRAGRLEEAEDL 407
Query: 288 ASGIPSQITNVVV 300
+P VV+
Sbjct: 408 VKKLPIPPNEVVL 420
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 90/199 (45%), Gaps = 30/199 (15%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG--FQSHVYVNTALGDMYVSLGFLKDSSKL 81
+ + L+R C S G QLHA + G F ++ AL +Y S + KL
Sbjct: 12 ALIFRSLLRQCARASAVRPGEQLHAAATVSGLLFSPSSFLLNALLHLYASCPLPSHARKL 71
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDG---YSRMNRSN---EALALFRRMAACEYTEPS 135
FD +P + +V T L++ + +D Y +M + + +AL + AC S
Sbjct: 72 FDRIPHSH--KDSVDYTALIRCSHPLDALRFYLQMRQRALPLDGVALICALGACSKLGDS 129
Query: 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
+ + + + K G +R+ ++++G ++D Y KCG + A ++F
Sbjct: 130 NL-VPQMHVGVVKFGFLRHTKVLNG-----------------VMDGYVKCGLVGEARRVF 171
Query: 196 EDTSVDRKNLVSWTTIISG 214
E+ ++ ++VSWT ++ G
Sbjct: 172 EE--IEEPSVVSWTVVLEG 188
>gi|242054925|ref|XP_002456608.1| hypothetical protein SORBIDRAFT_03g039300 [Sorghum bicolor]
gi|241928583|gb|EES01728.1| hypothetical protein SORBIDRAFT_03g039300 [Sorghum bicolor]
Length = 458
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 149/302 (49%), Gaps = 36/302 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT+ ++R+ L P G QLHA +K+G S+V+V +AL D Y +G ++++ +
Sbjct: 40 NEFTFGTVLRSATALRAPRAGVQLHACAAKLGLCSNVFVGSALLDHYAKMGAMREAHGVL 99
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
D+ E N+V++ +I GL+K W +I G S+ S EA+
Sbjct: 100 DDTREPNVVSYTALIAGLLKNGMFDEADRLFRRMPERNVVSWNAMIGGCSQAGLSEEAVN 159
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M E P+E T VL ++ G + + +H K D+++ N L+
Sbjct: 160 LFLEMCR-EGVTPNESTFPCVLTSVANAGALGVGRSVHASAIKF-LGKLDVYIGNSLVSF 217
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YA+CG + + F+ ++RKN+VSW +I G+A +G G+EA++ + M+ GLKP+
Sbjct: 218 YARCGSLEDSVLAFK--KMNRKNVVSWNALICGYAQNGKGEEALDAYRMMRATGLKPDNV 275
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+G +EG F E + +HY C++D+L RA R + A+
Sbjct: 276 TLLGLLFGCNHAGLVDEGYALFKTTEMEQPGILKPEHYACVVDLLSRAKRFDNAKRFLEE 335
Query: 291 IP 292
+P
Sbjct: 336 LP 337
>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
Length = 637
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 152/281 (54%), Gaps = 25/281 (8%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
++ C + + G LH V K+G V +L +MY LGFL +S+LF+E+P R+
Sbjct: 170 VVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRS 229
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
LV+WN ++ +GY+ + + L +R P + T++A+L A
Sbjct: 230 LVSWNSMVV-----IHNHNGYA--EKGMDLFNLMKRAG----INPDQATMVALLRACTDT 278
Query: 150 GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWT 209
G R + IH Y + GFNA DI ++ L++ YAK G + ++ +FE+ + ++ ++WT
Sbjct: 279 GLGRQAESIHAYIHRCGFNA-DIIIATALLNLYAKLGRLNASEDIFEE--IKDRDRIAWT 335
Query: 210 TIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKFFDKMVEE 258
+++G+A+H G+EA++ F+ M K G++ + + EEG K+F+ M E
Sbjct: 336 AMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEV 395
Query: 259 CEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVV 299
V P + HY C++D+L R+GRLE A E+ +P + ++ V
Sbjct: 396 YRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGV 436
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 134/269 (49%), Gaps = 26/269 (9%)
Query: 29 FLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPER 88
F I +C ++SY + +HA K S ++ L MY LG+ +D+ +LFDE+P +
Sbjct: 70 FAISSCTSVSYC---SAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNK 126
Query: 89 NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148
+LV+WN +++GL S L F RM +P+E+T+L+V+ A
Sbjct: 127 DLVSWNSLMSGL----------SGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAD 176
Query: 149 NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSW 208
G + + +HG K G + V N LI+ Y K G + +AS+LFE+ V ++LVSW
Sbjct: 177 MGALDEGKSLHGVVVKLGMSG-KAKVVNSLINMYGKLGFLDAASQLFEEMPV--RSLVSW 233
Query: 209 TTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG------EEGL----KFFDKMVEE 258
+++ +G ++ ++ F M++ G+ P+++ + + GL + +
Sbjct: 234 NSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHR 293
Query: 259 CEVLPDIKHYGCLIDILERAGRLEQAEEV 287
C DI L+++ + GRL +E++
Sbjct: 294 CGFNADIIIATALLNLYAKLGRLNASEDI 322
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 39/221 (17%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T L+R C +HA + GF + + + TAL ++Y LG L S +F
Sbjct: 264 DQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIF 323
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+ +R+ + WT ++ GY+ EA+ LF M E E +T +
Sbjct: 324 EEIKDRDRIA----------WTAMLAGYAVHACGREAIKLFDLMVK-EGVEVDHVTFTHL 372
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDI------------HVSNCLIDTYAKCGCIFS 190
L A +G V + G F+I H S C++D + G +
Sbjct: 373 LSACSHSGLV-----------EEGKKYFEIMSEVYRVEPRLDHYS-CMVDLLGRSGRLED 420
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENF 228
A +L + ++ + V W ++ ++G +GKE E
Sbjct: 421 AYELIKSMPMEPSSGV-WGALLGACRVYGNVELGKEVAEQL 460
>gi|242049708|ref|XP_002462598.1| hypothetical protein SORBIDRAFT_02g028755 [Sorghum bicolor]
gi|241925975|gb|EER99119.1| hypothetical protein SORBIDRAFT_02g028755 [Sorghum bicolor]
Length = 655
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/314 (29%), Positives = 149/314 (47%), Gaps = 55/314 (17%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY-------------------- 69
L++ C S G QLH V K GF +H +V L Y
Sbjct: 283 LMKACARYSAITEGQQLHTVILKNGFDAHAFVQATLVHFYGCCGLIGLAQMAFKLSDKSH 342
Query: 70 -----------VSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNE 118
+ G + ++ +LFD++PER+ V+W+ +I+ GY + RS+
Sbjct: 343 TASWNALLAALLRKGLIHEARELFDDMPERDTVSWSTMIS----------GYVQTGRSDM 392
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
AL LF M EP+E+T+ + L AI +G + + IH + R D ++S L
Sbjct: 393 ALELFYSMLNTS-VEPNEVTLASALSAIADSGTLDQGKWIHDHIMNRPIQLTD-NLSAGL 450
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
ID YAK G + A + F S ++ W +I A+HG +++ F ++Q+ +KP
Sbjct: 451 IDMYAKRGSVADAVQFFNCASDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQLQRTSIKP 510
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
N IG +G +F+ M E + P IKHYGC++D+L RAG LE+AE++
Sbjct: 511 NSITFIGVLSACCHTGMVAKGKYYFEAMTREYGIQPTIKHYGCMVDLLGRAGYLEEAEQL 570
Query: 288 ASGIPSQITNVVVW 301
S +P + +VV+W
Sbjct: 571 VSMMPMK-ADVVIW 583
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 76/327 (23%), Positives = 137/327 (41%), Gaps = 61/327 (18%)
Query: 16 SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQS-HVYVNTALGDMYVSL-G 73
+PL P FL+ + + G QLHA+ +K G + + +V ++ Y L
Sbjct: 6 NPLAP--------FLVASLKRAARLRCGEQLHALAAKSGLLACNAFVRNSVLSFYSRLPS 57
Query: 74 FLKDSSKLFDELPE--RNLVTWNVIITGL-----------------------VKWTGIID 108
L + +LFDE P R+ N ++ L V +T ++
Sbjct: 58 SLASALQLFDETPAPLRDTAARNSVLAALTRAGHLDRAQRLLDEMPRVHRDAVSYTTLVT 117
Query: 109 GYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN 168
+R + A+A+FR M + E P+E+T+ + A + G +IHG+ KR +
Sbjct: 118 ALARAGHAGRAVAVFRGMLS-ENVVPNEVTLAGAIMAFARCGAPATVGMIHGFALKRALD 176
Query: 169 AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENF 228
F I +N L+ YA ++SA +F+ + +N V+W +++G+ M A E F
Sbjct: 177 GFVIVATN-LVHAYAGVLELYSARAMFD--GMTHRNAVTWNAMLNGYVKAEMIDMAAEVF 233
Query: 229 ERMQKVGLKPNRSW----------RIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERA 278
R+ + + SW + + +K + +MV E + H L+D+++
Sbjct: 234 WRIPE---RDEVSWLTLIDGYICADLISDAMKAYVQMVGE---VGANDHEVLLVDLMKAC 287
Query: 279 GRLEQAEEVASGIPSQITNVVVWRTGF 305
R E Q + V+ + GF
Sbjct: 288 ARYSAITE------GQQLHTVILKNGF 308
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 76/346 (21%), Positives = 127/346 (36%), Gaps = 65/346 (18%)
Query: 40 PNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG 99
P +H K V V T L Y + L + +FD + RN VTWN ++ G
Sbjct: 160 PATVGMIHGFALKRALDGFVIVATNLVHAYAGVLELYSARAMFDGMTHRNAVTWNAMLNG 219
Query: 100 LVK---------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
VK W +IDGY + ++A+ + +M E+
Sbjct: 220 YVKAEMIDMAAEVFWRIPERDEVSWLTLIDGYICADLISDAMKAYVQMVGEVGANDHEVL 279
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD------IHVSNC--------------- 177
++ ++ A + + Q +H K GF+A +H C
Sbjct: 280 LVDLMKACARYSAITEGQQLHTVILKNGFDAHAFVQATLVHFYGCCGLIGLAQMAFKLSD 339
Query: 178 ---------LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENF 228
L+ + G I A +LF+D + ++ VSW+T+ISG+ G A+E F
Sbjct: 340 KSHTASWNALLAALLRKGLIHEARELFDD--MPERDTVSWSTMISGYVQTGRSDMALELF 397
Query: 229 ERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILER 277
M ++PN ++G D ++ L D G LID+ +
Sbjct: 398 YSMLNTSVEPNEVTLASALSAIADSGTLDQGKWIHDHIMNRPIQLTDNLSAG-LIDMYAK 456
Query: 278 AGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQ 323
G + A + + + ++V W L I+ Y + L SQ
Sbjct: 457 RGSVADAVQFFNCASDKFSSVSPWNAMICSLAIHGYAHMSLDLFSQ 502
>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g33170-like [Cucumis sativus]
Length = 749
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 86/277 (31%), Positives = 152/277 (54%), Gaps = 16/277 (5%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ +T + ++ C + +LG Q+H++ K+G+ S + + ++ +Y+ G+L ++ KLF
Sbjct: 259 NEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEAQKLF 318
Query: 83 DELPERNLVTWNVIITGLVKWTGII-DGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
+ + NLVTWN +I G K + D + + ALA+F+++ +P T +
Sbjct: 319 EGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSG-MKPDLFTFSS 377
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL + + IHG K G A D+ V L+ Y KCG I ASK F + +
Sbjct: 378 VLSVCSNLVALEQGEQIHGQIIKSGVLA-DVVVGTALVSMYNKCGSIDKASKAFLE--MP 434
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
+ ++SWT++I+GFA HG+ ++A++ FE M+ VG+KPN+ +G +E L
Sbjct: 435 SRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALY 494
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+F+ M ++ + P + H+ CLID+ R GR+E+A +V
Sbjct: 495 YFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDV 531
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 16/219 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S Y L++ C+ + +H K GF ++V T L ++Y G ++ + K+F
Sbjct: 57 ESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVF 116
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM-AACEYTEPSEITILA 141
D LP RN+ W ++T GY + + AL LF +M A Y PS T+
Sbjct: 117 DNLPRRNVNAWTTLLT----------GYVQNSHPLLALQLFIKMLEAGAY--PSNYTLGI 164
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL A + + +H Y K + FD + N L Y+K + A K F+ +
Sbjct: 165 VLNACSSLQSIEFGKQVHAYLIKYHID-FDTSIGNSLSSFYSKFRRLEFAIKAFK--IIK 221
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
K+++SWT++IS +G ++ F M G+KPN
Sbjct: 222 EKDVISWTSVISSCCDNGQAARSLSFFMDMLSDGMKPNE 260
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 107/234 (45%), Gaps = 23/234 (9%)
Query: 8 QQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGD 67
Q++Y P D FT+S ++ C L G Q+H K G + V V TAL
Sbjct: 361 QKLYRSGMKP-----DLFTFSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVS 415
Query: 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA 127
MY G + +SK F E+P R +++ WT +I G++R S +AL LF M
Sbjct: 416 MYNKCGSIDKASKAFLEMPSRTMIS----------WTSMITGFARHGLSQQALQLFEDMR 465
Query: 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDI--HVSNCLIDTYAKC 185
+P+++T + VL A G + + L + ++ +N + H + CLID Y +
Sbjct: 466 LVG-IKPNQVTFVGVLSACSHAG-LADEALYYFELMQKQYNIKPVMDHFA-CLIDMYLRL 522
Query: 186 GCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
G + A + + + N W+ +I+G H GK + + Q + LKP
Sbjct: 523 GRVEEAFDVVHKMNFE-PNETIWSMLIAGCRSH--GKSDLGFYAAEQLLKLKPK 573
>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
Length = 549
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/295 (32%), Positives = 153/295 (51%), Gaps = 30/295 (10%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
FT + ++ + N G +H K+G+ S V V+ +L DMY ++D+ ++F+
Sbjct: 158 FTVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEM 217
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ E+++ +WN I + + + G DG L L RM +P +T+ VLP
Sbjct: 218 MREKDIFSWNSIXS-VHEQCGDHDG---------TLRLLDRMLGAG-IQPDLVTVTTVLP 266
Query: 145 AIWKNGEVRNCQLIHGYG-----EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
A + + + IHGY K G + D+ + N +ID YAKCG + A +FE
Sbjct: 267 ACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFE--R 324
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
+ K++ SW +I G+ MHG G EA+E F RM +V LKP+ +G +G
Sbjct: 325 MXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQG 384
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F +M + +V P I+HY C+ID+L RAG+L++A E+A +P + N VVWR
Sbjct: 385 RNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIE-ANPVVWRA 438
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 112/217 (51%), Gaps = 17/217 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ I+ C+ + ++H + K G + V++ +AL + Y+ G ++ + F
Sbjct: 58 DKFTFPCAIKACLDVLEIK---KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAF 114
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ELP R++V WN +++GY+++ + L FRRM E PS T+ +
Sbjct: 115 EELPIRDVVLWN----------AMVNGYAQIGQFEMVLETFRRMND-ESVVPSRFTVTGI 163
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L G++ N ++IHG+ K G+++ + VSN LID Y KC CI A ++FE +
Sbjct: 164 LSVFAVMGDLNNGRIIHGFAMKMGYDS-GVAVSNSLIDMYGKCKCIEDALEIFE--MMRE 220
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
K++ SW +I S G + +RM G++P+
Sbjct: 221 KDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPD 257
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 71/158 (44%), Gaps = 17/158 (10%)
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D E N+ +N II+G I +G+ E +++M E P + T
Sbjct: 17 DPTHEINVFAFNAIISGF-----ITNGFPE-----EGFEFYQKMRN-EGVMPDKFTFPCA 65
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A E++ IHG K G D+ + + L++ Y K G + A FE+ +
Sbjct: 66 IKACLDVLEIKK---IHGLLFKFGLE-LDVFIGSALVNCYLKFGLMEHAQVAFEELPI-- 119
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+++V W +++G+A G + +E F RM + P+R
Sbjct: 120 RDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSR 157
>gi|414871822|tpg|DAA50379.1| TPA: hypothetical protein ZEAMMB73_401482 [Zea mays]
Length = 522
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 144/319 (45%), Gaps = 38/319 (11%)
Query: 16 SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL 75
SP PP D ++ L+ L G LH + K+G YV A MY S G
Sbjct: 127 SPTPP--DRRSFPSLLAAYARLGRAGDGEALHGMALKLGLAGDAYVRNATIAMYASCGRA 184
Query: 76 KDSSKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMN 114
++ LF + PE ++V N +I L + W+ ++ Y+R
Sbjct: 185 DEALALFGQCPELDVVACNSVIVALARAGRVDEARSVFDAMPERTVATWSAMVSAYARAA 244
Query: 115 RSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHV 174
R +EALALF M A + EP+ +++VL G + +H Y ++ G A + V
Sbjct: 245 RCSEALALFSAMQA-DGMEPNANVLVSVLGCCASLGALVQGAWVHEYIDRHGV-AMNALV 302
Query: 175 SNCLIDTYAKCGCIFSASKLFEDT-SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
L+D Y KCG + A ++F+ S L SW +++ G A+HG +EAV F ++
Sbjct: 303 VTALVDMYCKCGSVDDARQVFDAARSQGLAKLSSWNSMMQGLAVHGQWREAVALFSELKS 362
Query: 234 VGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLE 282
GL P+ I +E F M E V P I+HYGCL+D L RAGRL
Sbjct: 363 YGLSPDNVTFIAVLTAYGHSGMPDEAQAAFASMSSEHGVEPGIEHYGCLVDALARAGRLR 422
Query: 283 QAEEVASGIPSQITNVVVW 301
+AE+ +P + +W
Sbjct: 423 EAEDAIRAMP-MAPDAAIW 440
>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g04840-like [Vitis vinifera]
Length = 677
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/350 (28%), Positives = 166/350 (47%), Gaps = 72/350 (20%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T F++++ L LG LH K+G + +V +L DMYV +G L +LF
Sbjct: 137 DRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLF 196
Query: 83 DELPERN----LVTWNVIITG--------------------------------------- 99
DE P+RN ++ WNV+I G
Sbjct: 197 DESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPERNAGSWNSLINGFVRNGDLD 256
Query: 100 -------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI 146
+V WT +I+G+S+ +AL++F RM E P+++T+++ L A
Sbjct: 257 RARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRMLE-EGVRPNDLTVVSALLAC 315
Query: 147 WKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLV 206
K G ++ + IH Y GF + + L+D YAKCG I SAS++F +T K+L+
Sbjct: 316 TKIGALQVGERIHNYLSSNGFQ-LNRGIGTALVDMYAKCGNIKSASRVFVETK--GKDLL 372
Query: 207 SWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKM 255
+W+ +I G+A+HG +A++ F +M+ G+ P+ + ++GL FF+ M
Sbjct: 373 TWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESM 432
Query: 256 VEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGF 305
+ + P +KHY ++D+L RAGRL++A +P + V+W F
Sbjct: 433 RLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPIN-PDFVIWGALF 481
>gi|77553484|gb|ABA96280.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125578286|gb|EAZ19432.1| hypothetical protein OsJ_34992 [Oryza sativa Japonica Group]
Length = 518
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/349 (29%), Positives = 164/349 (46%), Gaps = 73/349 (20%)
Query: 19 PPLFDSFTYSF--LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76
P L S +F R + + G +LH K+G YV AL MY G L
Sbjct: 105 PALLKSCARAFNHSSRASAASVFVSKGMELHCRVLKLGCGKDRYVRNALVSMYGKFGRLG 164
Query: 77 DSSKLFDELPERNLVT-------------------------------WNVIIT------- 98
D+ K FDE+P++N V+ WN I
Sbjct: 165 DARKAFDEMPDKNAVSWNALVGAHRAAADWMGADRVSQAMPVRNLSWWNAEIARNVRIGY 224
Query: 99 --------------GLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
V W +I GY+++ + +AL +F+ M +P+E+T++ VL
Sbjct: 225 MDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQALGIFQEMQE-NGIQPTELTLVLVLG 283
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A K G++ IH + +G A D V N LID YAKCG + A K+F+ S+ ++
Sbjct: 284 ACAKIGKLDLGTNIHRNLQNKGIVA-DGLVGNALIDMYAKCGMLDLAKKVFDRMSM--RD 340
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFD 253
+ W +I GF++HG +EA+E F+ M+ ++PN +G EG K+F+
Sbjct: 341 ITCWNAMIVGFSVHGCSREALELFDSMK---IEPNPVTFLGVLTACSHGGLVNEGRKYFN 397
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
M+E+ ++PD+KHYGC+ID+L R G++E+A + PS ++ V+W+
Sbjct: 398 SMIEDYRIVPDVKHYGCMIDMLCRYGKIEEAYLMIKENPSTASS-VLWK 445
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 101/251 (40%), Gaps = 38/251 (15%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
T ++ C + +LGT +H G + V AL DMY G L + K+FD
Sbjct: 276 LTLVLVLGACAKIGKLDLGTNIHRNLQNKGIVADGLVGNALIDMYAKCGMLDLAKKVFDR 335
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ R++ WN +I G + G SR EAL LF M EP+ +T L VL
Sbjct: 336 MSMRDITCWNAMIVGFS-----VHGCSR-----EALELFDSMK----IEPNPVTFLGVLT 381
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAF--------DIHVSNCLIDTYAKCGCIFSASKLFE 196
A G V ++ FN+ D+ C+ID + G I A + +
Sbjct: 382 ACSHGGLVNE--------GRKYFNSMIEDYRIVPDVKHYGCMIDMLCRYGKIEEAYLMIK 433
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMV 256
+ +++ W +++ +HG A F ++++ L N GL +
Sbjct: 434 ENPSTASSVL-WKMLLAACRVHGHIDLAYMFFHELRELILTDN-------GGLVTISNVY 485
Query: 257 EECEVLPDIKH 267
E + D++H
Sbjct: 486 AEAKRWDDVEH 496
>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
Length = 665
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/312 (30%), Positives = 152/312 (48%), Gaps = 37/312 (11%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
+ TY ++ C LG Q+H + G V AL DMY G + + LF+
Sbjct: 161 AVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFE 220
Query: 84 ELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALAL 122
+ R++ +W +I+GLV+ WT +IDGY ++ R +AL
Sbjct: 221 GMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALET 280
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
FR M C+ E T+++V+ A + G + + Y + G D+ V N LID Y
Sbjct: 281 FRYMQICK-VRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIK-MDVFVGNALIDMY 338
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW 242
+KCG I A +F+D + ++ +WT II G A++G G+EA++ F RM + P+
Sbjct: 339 SKCGSIERALDVFKD--MHNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRALQTPDEVT 396
Query: 243 RIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
+G ++G +FF M E + P + HYGCLID+L RAG+L++A + +
Sbjct: 397 FVGVLTACTHAGLVDKGREFFLSMTEAYNISPTVVHYGCLIDVLGRAGKLKEALDTIDKM 456
Query: 292 PSQITNVVVWRT 303
P + N +W T
Sbjct: 457 PMK-PNSTIWGT 467
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 93/220 (42%), Gaps = 16/220 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT ++ C L G ++G + V+V AL DMY G ++ + +F
Sbjct: 292 DEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVF 351
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++ R+ TW II GL ++G R EA+ +F RM T P E+T + V
Sbjct: 352 KDMHNRDKFTWTAIILGLA-----VNG-----RGEEAIDMFYRMLRALQT-PDEVTFVGV 400
Query: 143 LPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G V + + E + +H CLID + G + A + +
Sbjct: 401 LTACTHAGLVDKGREFFLSMTEAYNISPTVVHY-GCLIDVLGRAGKLKEALDTIDKMPM- 458
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
+ N W T+++ ++G + ER+ + L P+ S
Sbjct: 459 KPNSTIWGTLLASCRVYGNSEIGELAAERLLE--LDPDNS 496
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 16/189 (8%)
Query: 46 LHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG---LVK 102
+HA K G +S+ + ++L MY + G + ++ + TG V
Sbjct: 78 IHAHVVKFGMESNAHAASSLIVMYAARGDGAAARA---------VLEAACLATGGGAPVM 128
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
W +I G++R R + F M + +T ++VL A K ++ +H
Sbjct: 129 WNALISGHNRSGRFELSCCSFVDMVRAS-AMATAVTYVSVLSACGKGKDLLLGMQVHKRV 187
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
+ G D V N L+D YA+CG + +A LFE + +++ SWT++ISG G
Sbjct: 188 LESGVLP-DQRVENALVDMYAECGDMDAAWVLFEGMQM--RSMASWTSVISGLVRSGQVD 244
Query: 223 EAVENFERM 231
A + F+ M
Sbjct: 245 RARDLFDHM 253
>gi|147819809|emb|CAN60740.1| hypothetical protein VITISV_030210 [Vitis vinifera]
Length = 1033
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/314 (30%), Positives = 159/314 (50%), Gaps = 39/314 (12%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD F + ++R + L + VF ++ + V N+ + Y+ G ++ +S+L
Sbjct: 142 FDPFVGNSMVRMYIDFGEIELARR---VFDRMPNRDVVSWNSMIAG-YLKAGEIELASEL 197
Query: 82 FDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEAL 120
FDE+PER+LV+ N +I G +V WT +I Y + +AL
Sbjct: 198 FDEMPERDLVSCNAMIDGYGKCGRCELAEKVFETMSDKDVVTWTSMISAYVQNRCPMKAL 257
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LFR M + P I++VL AI G V + +H Y + + LID
Sbjct: 258 DLFREMLSLG-LRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALID 316
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
Y+KCG I +A +F S R+N+ W ++ISG A+HG+ +EA++ F M+++ ++PN
Sbjct: 317 MYSKCGYIENAYHVFRSIS-HRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNE 375
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
+G EEG +F+ M E+ +++P I+HYGC+ID+ RAGRLE A V
Sbjct: 376 ITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQ 435
Query: 290 GIPSQITNVVVWRT 303
+P + +++ W+
Sbjct: 436 NMPFE-ADLLAWKA 448
>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
mitochondrial-like [Cucumis sativus]
Length = 792
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/301 (31%), Positives = 156/301 (51%), Gaps = 29/301 (9%)
Query: 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF 74
H+ L P + T L+ C N G Q+H+ K+GF + V +L MY
Sbjct: 395 HTGLVP--NDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNLDIPVCNSLLSMYSKCSN 452
Query: 75 LKDSSKLFDELPER-NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE 133
L D+ ++F+++ + ++V+WN ++T ++ N++ E L L + M A +
Sbjct: 453 LNDALQVFEDIGNKADIVSWNTLLTACLQ----------QNQAGEVLRLTKLMFA-SRIK 501
Query: 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASK 193
P +T+ VL + + IH + K G N DI VSN LI+ Y KCG + A K
Sbjct: 502 PDHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLN-LDISVSNALINMYTKCGSLECARK 560
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-------- 245
+F+ S+ +++SW+++I G+A G GKEA E F M+ +G+KPN +G
Sbjct: 561 MFD--SIGNPDIISWSSLIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHI 618
Query: 246 ---EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
EEGLK + M E+ + P +H C++D+L RAG L+ AE+ +P + +VVVW+
Sbjct: 619 GMVEEGLKLYRTMQEDYRISPTKEHCSCMVDLLARAGCLDVAEDFIRQMPF-VPDVVVWK 677
Query: 303 T 303
T
Sbjct: 678 T 678
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 102/217 (47%), Gaps = 13/217 (5%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ ++++C L L QLHA K F + + AL MY + D+ +F
Sbjct: 198 DHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVF 257
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+II L+ W +I G+S++ EAL FR M + +P+E +
Sbjct: 258 SR----------IIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSA 307
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
A K E + IHG K G + D+ L D YAKCG + SA +F +++
Sbjct: 308 FSACSKLLEPDCGRQIHGLCIKFGLGS-DLFAGCSLCDMYAKCGFLESARTVF--YHIEK 364
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+LV+W II+GFA KE+ F +M+ GL PN
Sbjct: 365 PDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPN 401
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 136/295 (46%), Gaps = 33/295 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ F + C L P+ G Q+H + K G S ++ +L DMY GFL+ + +F
Sbjct: 300 NEFVFGSAFSACSKLLEPDCGRQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVF 359
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + +LV WN II G++ ++ + E+ + F +M P+++T+L++
Sbjct: 360 YHIEKPDLVAWNAIIA----------GFASVSNAKESSSFFSQMRHTGLV-PNDVTVLSL 408
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + + + +H Y K GFN DI V N L+ Y+KC + A ++FED ++
Sbjct: 409 LCACSEPVMLNHGIQVHSYIVKMGFN-LDIPVCNSLLSMYSKCSNLNDALQVFEDIG-NK 466
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR--------------SWRIGEEG 248
++VSW T+++ E + + M +KP+ S+ +G +
Sbjct: 467 ADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQIASYEVGSQI 526
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F + + + DI LI++ + G LE A ++ I + +++ W +
Sbjct: 527 HCF----IMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGN--PDIISWSS 575
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 102/218 (46%), Gaps = 18/218 (8%)
Query: 14 SHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG 73
S SPL S TY+ LI C +L G ++H +Q + + + MY G
Sbjct: 92 SSSPL----KSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCG 147
Query: 74 FLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE 133
LK++ +FD +P +N+V+ WT +I GYSR + A+ L+ +M +
Sbjct: 148 SLKEARNMFDSMPLKNVVS----------WTSMISGYSRYGEEDNAITLYVQMLRSGHI- 196
Query: 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASK 193
P T +++ + + + + +H + K F A D+ N LI Y K + A
Sbjct: 197 PDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFGA-DLIAQNALISMYTKFSQMADAIN 255
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
+F + K+L+SW ++I+GF+ G EA+ +F M
Sbjct: 256 VFSRIII--KDLISWGSMIAGFSQLGYELEALCHFREM 291
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 12/155 (7%)
Query: 112 RMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD 171
+ N EAL F C + +T ++ A + + + IH + + D
Sbjct: 74 KKNLHREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNYQP-D 132
Query: 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
+ + N ++ Y KCG + A +F+ S+ KN+VSWT++ISG++ +G A+ + +M
Sbjct: 133 MILQNHILSMYGKCGSLKEARNMFD--SMPLKNVVSWTSMISGYSRYGEEDNAITLYVQM 190
Query: 232 QKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIK 266
+ G P+ F +V+ C L D K
Sbjct: 191 LRSGHIPDHFT---------FGSIVKSCSGLDDFK 216
>gi|147771783|emb|CAN60259.1| hypothetical protein VITISV_007741 [Vitis vinifera]
Length = 602
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 157/313 (50%), Gaps = 41/313 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D S ++ C L + +H K G + +V++ L Y G L + + F
Sbjct: 191 DMVAVSTVVSACGLLGDLGVAKAMHCFIEKSGIEVDAFVSSTLISTYGECGSLDYAYRFF 250
Query: 83 DELPERNLVTWNVII---------------------TGLVKWTGIIDGYSRMNRSNEALA 121
E P +N+V WN +I +V W +I G++R+ + EAL
Sbjct: 251 QETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALT 310
Query: 122 LFRRMAACEYT--EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
F M E++ P+ +T+L+ L A +G + IH Y +K N D + + LI
Sbjct: 311 WFHEM---EFSGVSPNALTLLSTLSACASHGALDTGAWIHAYVDKNDMNR-DGSLDSSLI 366
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D Y+KCG I A ++FE+++ R++L +WT+I+ G AMHG G++A+ F +M++ ++P+
Sbjct: 367 DMYSKCGDIDKAVQIFEEST--RRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPD 424
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
+G ++G +F M + ++P ++HYG ++D+L R G L++A ++
Sbjct: 425 DVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVEHYGXMVDLLGRMGCLKEAYDLI 484
Query: 289 SGIPSQITNVVVW 301
G+P + N ++W
Sbjct: 485 MGMPME-ANEIIW 496
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 71/246 (28%), Positives = 111/246 (45%), Gaps = 41/246 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T+ +L++ V+ G ++HA + GF +V+ AL YV+ G + ++F
Sbjct: 90 NGHTFMYLLKALVSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVF 149
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ + GLV WT II Y + +AL LFR M T P + + V
Sbjct: 150 DEMRQP----------GLVLWTLIIRAYVCVTFPEKALELFRTMREVGLT-PDMVAVSTV 198
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT---- 198
+ A G++ + +H + EK G D VS+ LI TY +CG + A + F++T
Sbjct: 199 VSACGLLGDLGVAKAMHCFIEKSGIEV-DAFVSSTLISTYGECGSLDYAYRFFQETPMKN 257
Query: 199 ----------SVDRKNL---------------VSWTTIISGFAMHGMGKEAVENFERMQK 233
SV+ NL VSW ++I GFA G +EA+ F M+
Sbjct: 258 IVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEF 317
Query: 234 VGLKPN 239
G+ PN
Sbjct: 318 SGVSPN 323
>gi|356574078|ref|XP_003555179.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g56570-like [Glycine max]
Length = 598
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 148/280 (52%), Gaps = 28/280 (10%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
F++S R C ++ LG Q+HA K GF+S++ V ++ DMY ++ +LF
Sbjct: 215 FSFSIAARACASIGSGILGKQVHAEVVKHGFESNLPVMNSILDMYCKCHCESEAKRLFSV 274
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ ++ +TWN +I G S E+L +F RM + E P + + +
Sbjct: 275 MTHKDTITWNTLIAGFEALD-----------SRESLCIFSRMVS-EGLXPDCFSFTSAVG 322
Query: 145 AIWKNGEVRNC-QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
A N V C Q +HG + G + + + +SN LI YAKCG I + K+F + +
Sbjct: 323 AC-ANLAVLYCGQQLHGVIVRSGLDNY-LEISNALIYMYAKCGNIADSRKIF--SKMPCT 378
Query: 204 NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFF 252
NLVSWT++I+G+ HG GK+AVE F M + G+KP++ + +EGL++F
Sbjct: 379 NLVSWTSMINGYGDHGYGKDAVELFNEMIRSGIKPDKMVFMAVLSACSHAGLVDEGLRYF 438
Query: 253 DKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
M + PDI+ YGC++D+ RAGR+++A ++ +P
Sbjct: 439 RLMTSYYNITPDIEIYGCVVDLFGRAGRVKEAYQLIENMP 478
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 102/221 (46%), Gaps = 24/221 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D F+++ + C L+ G QLH V + G +++ ++ AL MY G + DS K+F
Sbjct: 313 DCFSFTSAVGACANLAVLYCGQQLHGVIVRSGLDNYLEISNALIYMYAKCGNIADSRKIF 372
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++P NLV+W +I+GY +A+ LF M +P ++ +AV
Sbjct: 373 SKMPCTNLVSWT----------SMINGYGDHGYGKDAVELFNEMIR-SGIKPDKMVFMAV 421
Query: 143 LPAIWKNGEV----RNCQLIHGYGEKRGFNAF-DIHVSNCLIDTYAKCGCIFSASKLFED 197
L A G V R +L+ Y +N DI + C++D + + G + A +L E+
Sbjct: 422 LSACSHAGLVDEGLRYFRLMTSY-----YNITPDIEIYGCVVDLFGRAGRVKEAYQLIEN 476
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
+ + W ++ +H + +V F ++ + +KP
Sbjct: 477 MPFNPDESI-WAALLGACKVH--NQPSVAKFAALRALDMKP 514
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 99/202 (49%), Gaps = 23/202 (11%)
Query: 43 GTQLHAVFSKVGFQ-SHVYVNTALGDMYVSLGFLKDSSKL-FDELPERNLVTWNVIITGL 100
G +H++ K+G Q S VYV+ +L DMY + D +++ FD++ + V W
Sbjct: 130 GQLVHSLAIKIGVQGSSVYVDNSLMDMYATCCDSMDRARMVFDDITTKTDVCW------- 182
Query: 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQL--- 157
T +I GY+ + L +FR+M + E +++ + A + + L
Sbjct: 183 ---TTLITGYTHRGDAYGGLRVFRQM----FLEEGALSLFSFSIAARACASIGSGILGKQ 235
Query: 158 IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAM 217
+H K GF + ++ V N ++D Y KC C A +LF + + K+ ++W T+I+GF
Sbjct: 236 VHAEVVKHGFES-NLPVMNSILDMYCKCHCESEAKRLF--SVMTHKDTITWNTLIAGFEA 292
Query: 218 HGMGKEAVENFERMQKVGLKPN 239
+E++ F RM GL P+
Sbjct: 293 LD-SRESLCIFSRMVSEGLXPD 313
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 35/160 (21%)
Query: 75 LKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134
+K+ LFD++P+RN+VTW +IT S +R+N A
Sbjct: 78 IKEPHALFDKMPQRNVVTWTAMIT------------SNNSRNNHMRA------------- 112
Query: 135 SEITILAVLPAIWKNG-EVRNC-QLIHGYGEKRGFNAFDIHVSNCLIDTYAK-CGCIFSA 191
+V P + ++G + +C QL+H K G ++V N L+D YA C + A
Sbjct: 113 -----WSVFPQMLRDGVKALSCGQLVHSLAIKIGVQGSSVYVDNSLMDMYATCCDSMDRA 167
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
+F+D + K V WTT+I+G+ G + F +M
Sbjct: 168 RMVFDDITT--KTDVCWTTLITGYTHRGDAYGGLRVFRQM 205
>gi|115486992|ref|NP_001065983.1| Os12g0114400 [Oryza sativa Japonica Group]
gi|113648490|dbj|BAF29002.1| Os12g0114400, partial [Oryza sativa Japonica Group]
Length = 504
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/349 (29%), Positives = 164/349 (46%), Gaps = 73/349 (20%)
Query: 19 PPLFDSFTYSF--LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76
P L S +F R + + G +LH K+G YV AL MY G L
Sbjct: 91 PALLKSCARAFNHSSRASAASVFVSKGMELHCRVLKLGCGKDRYVRNALVSMYGKFGRLG 150
Query: 77 DSSKLFDELPERNLVT-------------------------------WNVIIT------- 98
D+ K FDE+P++N V+ WN I
Sbjct: 151 DARKAFDEMPDKNAVSWNALVGAHRAAADWMGADRVSQAMPVRNLSWWNAEIARNVRIGY 210
Query: 99 --------------GLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
V W +I GY+++ + +AL +F+ M +P+E+T++ VL
Sbjct: 211 MDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQALGIFQEMQE-NGIQPTELTLVLVLG 269
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A K G++ IH + +G A D V N LID YAKCG + A K+F+ S+ ++
Sbjct: 270 ACAKIGKLDLGTNIHRNLQNKGIVA-DGLVGNALIDMYAKCGMLDLAKKVFDRMSM--RD 326
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFD 253
+ W +I GF++HG +EA+E F+ M+ ++PN +G EG K+F+
Sbjct: 327 ITCWNAMIVGFSVHGCSREALELFDSMK---IEPNPVTFLGVLTACSHGGLVNEGRKYFN 383
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
M+E+ ++PD+KHYGC+ID+L R G++E+A + PS ++ V+W+
Sbjct: 384 SMIEDYRIVPDVKHYGCMIDMLCRYGKIEEAYLMIKENPSTASS-VLWK 431
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/251 (24%), Positives = 101/251 (40%), Gaps = 38/251 (15%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
T ++ C + +LGT +H G + V AL DMY G L + K+FD
Sbjct: 262 LTLVLVLGACAKIGKLDLGTNIHRNLQNKGIVADGLVGNALIDMYAKCGMLDLAKKVFDR 321
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ R++ WN +I G + G SR EAL LF M EP+ +T L VL
Sbjct: 322 MSMRDITCWNAMIVGFS-----VHGCSR-----EALELFDSMK----IEPNPVTFLGVLT 367
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAF--------DIHVSNCLIDTYAKCGCIFSASKLFE 196
A G V ++ FN+ D+ C+ID + G I A + +
Sbjct: 368 ACSHGGLVNE--------GRKYFNSMIEDYRIVPDVKHYGCMIDMLCRYGKIEEAYLMIK 419
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMV 256
+ +++ W +++ +HG A F ++++ L N GL +
Sbjct: 420 ENPSTASSVL-WKMLLAACRVHGHIDLAYMFFHELRELILTDN-------GGLVTISNVY 471
Query: 257 EECEVLPDIKH 267
E + D++H
Sbjct: 472 AEAKRWDDVEH 482
>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 773
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 155/292 (53%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DSFT S ++ + G ++H + G + VYV ++L DMY + DS ++F
Sbjct: 299 DSFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVF 358
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
L ER+ ++WN II G V+ G+ D E L FR+M + +P + ++
Sbjct: 359 TLLTERDGISWNSIIAGCVQ-NGLFD---------EGLKFFRQMLMAK-IKPKSYSFSSI 407
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+PA + + +HGY + GF+ +I +++ L+D YAKCG I +A ++F+ +
Sbjct: 408 MPACAHLTTLHLGKQLHGYITRNGFDE-NIFIASSLVDMYAKCGNIRTARQIFDRMRL-- 464
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKF 251
+++VSWT +I G A+HG +A+E FE+M+ G++PN + +E K+
Sbjct: 465 RDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKY 524
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ M + + P ++HY + D+L RAGRLE+A + G+P T VW T
Sbjct: 525 FNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTG-SVWAT 575
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 88/159 (55%), Gaps = 14/159 (8%)
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
K+F+ +PE++LV+WN II G +R E L + R M +P T+
Sbjct: 255 KIFEMMPEKDLVSWNTIIA----------GNARNGLYGETLTMVREMGGANL-KPDSFTL 303
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+VLP I +N ++ + IHG ++G +A +++V++ LID YAKC + + ++F T
Sbjct: 304 SSVLPLIAENVDISKGKEIHGCSIRQGLDA-EVYVASSLIDMYAKCTRVVDSYRVF--TL 360
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
+ ++ +SW +II+G +G+ E ++ F +M +KP
Sbjct: 361 LTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKP 399
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 94/228 (41%), Gaps = 46/228 (20%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS---- 78
D + +++ C L NLG LH +VG +Y AL +MY L FLK S
Sbjct: 107 DHNVFPSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQR 166
Query: 79 ---SKLFDELPE--RNLVTWNVIITGLVKWTGIIDG--YSRMNRSNEALALFRRMAACEY 131
S++ DE+ E R++ T +V++ + I+ Y RS E A ++ +Y
Sbjct: 167 LGASQVLDEMTERTRSVRTASVLVGNQGRKVSDIEAFNYDVSCRSREFEA---QVLEIDY 223
Query: 132 TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191
SE E+ C L G++ I + + S
Sbjct: 224 KPRSEYR------------EMEACNL----GQQ--------------IKDISHSMSVDSV 253
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
K+FE + K+LVSW TII+G A +G+ E + M LKP+
Sbjct: 254 RKIFE--MMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPD 299
>gi|90657651|gb|ABD96949.1| hypothetical protein [Cleome spinosa]
Length = 639
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 155/310 (50%), Gaps = 37/310 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + C L +G ++H + + + AL DMY G + + +F
Sbjct: 215 DEATVVSTLSACSVLRNQEVGEEIHR-YVDAELEMTTKIGNALLDMYCKCGCVDKARAIF 273
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
DE+ +N++ W +++G +V WT +I+GY + N +EAL
Sbjct: 274 DEMGNKNVICWTSMVSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEALK 333
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LFR+M + P ++ +L + G + + +HGY + D V L+D
Sbjct: 334 LFRKMQI-QRLRPDNFILVTLLKGCAQTGALEQGKWLHGYIHENSIT-LDRVVGTALVDV 391
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCGC+ A ++F + + ++ SWT++I G A++GM +A++ F +M++ G +P+
Sbjct: 392 YAKCGCVEKALEVFYE--MKERDTASWTSVIYGLAVNGMTSKALDFFSQMEEAGFRPDDI 449
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
IG EEG ++FD M + ++ P +HY CLID+L RAG L++AE +
Sbjct: 450 TFIGVLTACNHGGLVEEGRRYFDSMTKTYKIQPKSEHYSCLIDLLCRAGLLDEAELLLEM 509
Query: 291 IPSQITNVVV 300
IP + +++VV
Sbjct: 510 IPIESSDIVV 519
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 139/272 (51%), Gaps = 28/272 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FT + + L G ++H K GF + V N+ +G MY +LG ++ + K+F
Sbjct: 115 DNFTLPPVFKAMGCLGKVVEGEKVHGYVVKSGFDACV-CNSVMG-MYGALGKMEVAKKVF 172
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+PER++V+WNV+I+ V G+ + +A+A+FRRM + E T+++
Sbjct: 173 DEIPERDVVSWNVLISSYV-------GHRKF---EDAIAVFRRMRRESNLKADEATVVST 222
Query: 143 LPA--IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
L A + +N EV + IH Y + + N L+D Y KCGC+ A +F++ +
Sbjct: 223 LSACSVLRNQEVG--EEIHRYVDAE--LEMTTKIGNALLDMYCKCGCVDKARAIFDE--M 276
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFER-------MQKVGLKPNRSWRIGEEGLKFFD 253
KN++ WT+++SG+A +G EA E FER + + + + +E LK F
Sbjct: 277 GNKNVICWTSMVSGYASNGSLDEARELFERSPVRDIVLWTAMINGYVQFNLFDEALKLFR 336
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAE 285
KM + + PD L+ + G LEQ +
Sbjct: 337 KMQIQ-RLRPDNFILVTLLKGCAQTGALEQGK 367
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 70/287 (24%), Positives = 132/287 (45%), Gaps = 39/287 (13%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
L+++C ++++ TQ+HA +VG Q ++ T + + F D S+ ER
Sbjct: 22 LLQSCESMAHL---TQIHAKIFRVGLQDNMDTLTKI------VLFCTDPSRGSIRYAER- 71
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
V V LV + +I ++ + L LF + + P T+ V A+
Sbjct: 72 -VLGFVQSPCLVMYNLMIKAVAKDENFRKVLVLFSELRK-QGLNPDNFTLPPVFKAMGCL 129
Query: 150 GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWT 209
G+V + +HGY K GF+A V N ++ Y G + A K+F++ + +++VSW
Sbjct: 130 GKVVEGEKVHGYVVKSGFDAC---VCNSVMGMYGALGKMEVAKKVFDE--IPERDVVSWN 184
Query: 210 TIISGFAMHGMGKEAVENFERMQK-VGLKPN--------------RSWRIGEEGLKFFDK 254
+IS + H ++A+ F RM++ LK + R+ +GEE ++ D
Sbjct: 185 VLISSYVGHRKFEDAIAVFRRMRRESNLKADEATVVSTLSACSVLRNQEVGEEIHRYVDA 244
Query: 255 MVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
E E+ I + L+D+ + G +++A + + ++ NV+ W
Sbjct: 245 ---ELEMTTKIGN--ALLDMYCKCGCVDKARAIFDEMGNK--NVICW 284
>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g13230, mitochondrial; Flags: Precursor
gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 822
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 150/292 (51%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT S ++ C LG QLH + KVGF +YV+ AL D+Y + + KLF
Sbjct: 347 NEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLF 406
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
EL +N V+WN +I GY + +A ++FR A +E+T +
Sbjct: 407 AELSSKNEVSWNTVIV----------GYENLGEGGKAFSMFRE-ALRNQVSVTEVTFSSA 455
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + +HG K NA + VSN LID YAKCG I A +F + ++
Sbjct: 456 LGACASLASMDLGVQVHGLAIKTN-NAKKVAVSNSLIDMYAKCGDIKFAQSVFNE--MET 512
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
++ SW +ISG++ HG+G++A+ + M+ KPN +G ++G +
Sbjct: 513 IDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQEC 572
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ M+ + + P ++HY C++ +L R+G+L++A ++ GIP + +V++WR
Sbjct: 573 FESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYE-PSVMIWRA 623
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 135/322 (41%), Gaps = 36/322 (11%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
+ S + P DS Y ++R C+ + P +H K G ++ L + YV
Sbjct: 37 LESSDSIIPGLDSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVK 96
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY 131
GF KD+ LFDE+PERN V++ + G I YSR++R L
Sbjct: 97 AGFDKDALNLFDEMPERNNVSFVTLAQGYA-CQDPIGLYSRLHREGHEL----------- 144
Query: 132 TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF--NAFDIHVSNCLIDTYAKCGCIF 189
P T L E+ C +H K G+ NAF V LI+ Y+ CG +
Sbjct: 145 -NPHVFTSFLKLFVSLDKAEI--CPWLHSPIVKLGYDSNAF---VGAALINAYSVCGSVD 198
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR----SWRIG 245
SA +FE + K++V W I+S + +G +++++ M+ G PN +
Sbjct: 199 SARTVFE--GILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKA 256
Query: 246 EEGLKFFD-------KMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNV 298
GL FD ++++ C VL G L+ + + G + A +V + +P +V
Sbjct: 257 SIGLGAFDFAKGVHGQILKTCYVLDPRVGVG-LLQLYTQLGDMSDAFKVFNEMPK--NDV 313
Query: 299 VVWRTGFLRLLINSYFFSPITL 320
V W R N + + L
Sbjct: 314 VPWSFMIARFCQNGFCNEAVDL 335
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 130/305 (42%), Gaps = 31/305 (10%)
Query: 9 QIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDM 68
+++ H P +F SF F V+L + LH+ K+G+ S+ +V AL +
Sbjct: 136 RLHREGHELNPHVFTSFLKLF-----VSLDKAEICPWLHSPIVKLGYDSNAFVGAALINA 190
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y G + + +F+ ++ +V W GI+ Y ++L L M
Sbjct: 191 YSVCGSVDSARTVFE----------GILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRM 240
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
+ P+ T L A G + +HG K + D V L+ Y + G +
Sbjct: 241 AGFM-PNNYTFDTALKASIGLGAFDFAKGVHGQILKTCY-VLDPRVGVGLLQLYTQLGDM 298
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-------- 240
A K+F + + + ++V W+ +I+ F +G EAV+ F RM++ + PN
Sbjct: 299 SDAFKVFNE--MPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILN 356
Query: 241 SWRIGE-EGL-KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNV 298
IG+ GL + +V + DI LID+ + +++ A ++ + + S+ N
Sbjct: 357 GCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSK--NE 414
Query: 299 VVWRT 303
V W T
Sbjct: 415 VSWNT 419
>gi|356534396|ref|XP_003535741.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g04780-like [Glycine max]
Length = 632
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/279 (34%), Positives = 148/279 (53%), Gaps = 34/279 (12%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
F+ FT S ++ C QLHA K S+ +V TAL +Y +KD+S++
Sbjct: 149 FNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVXTALLHVYAKCSSIKDASQM 208
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE-----PSE 136
F+ +PE+N VTW+ ++ G V+ +G+ +EAL LF + + S
Sbjct: 209 FESMPEKNAVTWSSMMAGYVQ-----NGF-----HDEALLLFHNAQLMGFDQDPFNISSA 258
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
++ A L + + +V H K GF + +I+V++ LID YAKCGCI A +FE
Sbjct: 259 VSACAGLATLVEGKQV------HAMSHKSGFGS-NIYVASSLIDMYAKCGCIREAYLVFE 311
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP---------NRSWRIG-- 245
V+ +++V W +ISGFA H + +EA+ FE+MQ+ G P N +G
Sbjct: 312 GF-VEVRSIVLWNAMISGFARHALAQEAMILFEKMQQRGFFPDDVTYVSVLNACSHMGLH 370
Query: 246 EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
EEG K+FD MV + + P + HY C+IDIL RAG +++A
Sbjct: 371 EEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVQKA 409
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 130/312 (41%), Gaps = 28/312 (8%)
Query: 29 FLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPER 88
+L++ C G HA ++G + + +T L +MY + + K DE+ +
Sbjct: 55 YLLQLCAKTGSSMGGRACHAQIIRIGLEMDILTSTMLINMYSKCSLVHSTRKKXDEMLVK 114
Query: 89 NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148
+L+ N I L + +AL L RM E T +E TI +VL
Sbjct: 115 SLILXNTRIGALTQNA----------EDRKALKLLIRMQR-EVTPFNEFTISSVLCNCAF 163
Query: 149 NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSW 208
+ C +H + K ++ + V L+ YAKC I AS++FE S+ KN V+W
Sbjct: 164 KCAILECMQLHAFSIKAAIDS-NCFVXTALLHVYAKCSSIKDASQMFE--SMPEKNAVTW 220
Query: 209 TTIISGFAMHGMGKEAVENFERMQKVGLKPN----RSWRIGEEGL------KFFDKMVEE 258
+++++G+ +G EA+ F Q +G + S GL K M +
Sbjct: 221 SSMMAGYVQNGFHDEALLLFHNAQLMGFDQDPFNISSAVSACAGLATLVEGKQVHAMSHK 280
Query: 259 CEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR---TGFLRLLINSYFF 315
+I LID+ + G + +A V G ++ ++V+W +GF R +
Sbjct: 281 SGFGSNIYVASSLIDMYAKCGCIREAYLVFEGFV-EVRSIVLWNAMISGFARHALAQEAM 339
Query: 316 SPITLNSQRLFF 327
QR FF
Sbjct: 340 ILFEKMQQRGFF 351
>gi|302142563|emb|CBI19766.3| unnamed protein product [Vitis vinifera]
Length = 494
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 164/337 (48%), Gaps = 78/337 (23%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T + I C +L G +LH+V K+G + V +L DMY G L+D+ ++F
Sbjct: 9 NGVTVTSGISACASLKALKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVF 68
Query: 83 DELPER-----------------------------------NLVTWNVIITGLVK----- 102
D + ++ N+VTWN +I+G ++
Sbjct: 69 DMILKKDVYTWNSMIGGYCQAGYCGKAYDLFIKMHESDVPPNVVTWNAMISGYIQNGDED 128
Query: 103 ---------------------WTGIIDGYSRMNRSNEALALFRRMAA-CEYTEPSEITIL 140
W +I GY + N+AL +FR+M + C P+ +T+L
Sbjct: 129 QAMDLFHRMEKDGLIKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSFC--IRPNSVTML 186
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
++LPA + + IHG +R + ++ V+NCLIDTYAK G I A +F+ +
Sbjct: 187 SILPACANLVAAKKVKEIHGCILRRNLGS-ELSVANCLIDTYAKSGNIVYAQTIFQ--GI 243
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
K+++SW ++I+G+ +HG A++ F++M K+G+KP+R + ++G
Sbjct: 244 SSKDIISWNSLIAGYVLHGCSDSALDLFDQMTKMGVKPSRGTFLSIIYAFSLSGMVDKGK 303
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
+ F M+E+ ++LP ++H+ +ID+L R+G+L +A E
Sbjct: 304 QVFSSMMEDYQILPGLEHHSAMIDLLGRSGKLGEAIE 340
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 91/219 (41%), Gaps = 24/219 (10%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
+++Q+Q I +S T ++ C L ++H + S + V
Sbjct: 169 IFRQMQSFCIRP--------NSVTMLSILPACANLVAAKKVKEIHGCILRRNLGSELSVA 220
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
L D Y G + + +F + +++++WN +I GY S+ AL L
Sbjct: 221 NCLIDTYAKSGNIVYAQTIFQGISSKDIISWNSLIA----------GYVLHGCSDSALDL 270
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEV-RNCQLIHGYGEK-RGFNAFDIHVSNCLID 180
F +M +PS T L+++ A +G V + Q+ E + + H + +ID
Sbjct: 271 FDQMTKMG-VKPSRGTFLSIIYAFSLSGMVDKGKQVFSSMMEDYQILPGLEHH--SAMID 327
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
+ G + A + ED +++ + + W +++ +HG
Sbjct: 328 LLGRSGKLGEAIEFIEDMAIEPDSCI-WAALLTASKIHG 365
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 55/107 (51%), Gaps = 3/107 (2%)
Query: 133 EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSAS 192
EP+ +T+ + + A ++ +H K G D+ V N LID Y+K G + A
Sbjct: 7 EPNGVTVTSGISACASLKALKKGMELHSVAVKIGC-VEDLLVGNSLIDMYSKSGELEDAR 65
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
++F+ + +K++ +W ++I G+ G +A + F +M + + PN
Sbjct: 66 RVFD--MILKKDVYTWNSMIGGYCQAGYCGKAYDLFIKMHESDVPPN 110
>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
mitochondrial-like [Vitis vinifera]
Length = 694
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 153/281 (54%), Gaps = 25/281 (8%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
++ C + + G LH V K+G V +L +MY LGFL +S+LF+E+P R+
Sbjct: 227 VVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRS 286
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
LV+WN ++ +I ++ + + + LF M P + T++A+L A
Sbjct: 287 LVSWNSMV--------VIHNHN--GYAEKGMDLFNLMKRAG-INPDQATMVALLRACTDT 335
Query: 150 GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWT 209
G R + IH Y + GFNA DI ++ L++ YAK G + ++ +FE+ + ++ ++WT
Sbjct: 336 GLGRQAESIHAYIHRCGFNA-DIIIATALLNLYAKLGRLNASEDIFEE--IKDRDRIAWT 392
Query: 210 TIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKFFDKMVEE 258
+++G+A+H G+EA++ F+ M K G++ + + EEG K+F+ M E
Sbjct: 393 AMLAGYAVHACGREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEV 452
Query: 259 CEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVV 299
V P + HY C++D+L R+GRLE A E+ +P + ++ V
Sbjct: 453 YRVEPRLDHYSCMVDLLGRSGRLEDAYELIKSMPMEPSSGV 493
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 134/269 (49%), Gaps = 26/269 (9%)
Query: 29 FLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPER 88
F I +C ++SY + +HA K S ++ L MY LG+ +D+ +LFDE+P +
Sbjct: 127 FAISSCTSVSYC---SAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNK 183
Query: 89 NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148
+LV+WN +++GL S L F RM +P+E+T+L+V+ A
Sbjct: 184 DLVSWNSLMSGL----------SGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAD 233
Query: 149 NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSW 208
G + + +HG K G + V N LI+ Y K G + +AS+LFE+ V ++LVSW
Sbjct: 234 MGALDEGKSLHGVVVKLGMSG-KAKVVNSLINMYGKLGFLDAASQLFEEMPV--RSLVSW 290
Query: 209 TTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG------EEGL----KFFDKMVEE 258
+++ +G ++ ++ F M++ G+ P+++ + + GL + +
Sbjct: 291 NSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHR 350
Query: 259 CEVLPDIKHYGCLIDILERAGRLEQAEEV 287
C DI L+++ + GRL +E++
Sbjct: 351 CGFNADIIIATALLNLYAKLGRLNASEDI 379
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 39/221 (17%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T L+R C +HA + GF + + + TAL ++Y LG L S +F
Sbjct: 321 DQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIF 380
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+ +R+ + WT ++ GY+ EA+ LF M E E +T +
Sbjct: 381 EEIKDRDRIA----------WTAMLAGYAVHACGREAIKLFDLMVK-EGVEVDHVTFTHL 429
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDI------------HVSNCLIDTYAKCGCIFS 190
L A +G V + G F+I H S C++D + G +
Sbjct: 430 LSACSHSGLV-----------EEGKKYFEIMSEVYRVEPRLDHYS-CMVDLLGRSGRLED 477
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENF 228
A +L + ++ + V W ++ ++G +GKE E
Sbjct: 478 AYELIKSMPMEPSSGV-WGALLGACRVYGNVELGKEVAEQL 517
>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
[Vitis vinifera]
gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
Length = 601
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 144/269 (53%), Gaps = 30/269 (11%)
Query: 59 VYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNE 118
VYV +AL DMY G+ D+ K+F+E+P RNLV+W +I GY + NR E
Sbjct: 240 VYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIA----------GYVQCNRYKE 289
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGE--KRGFNAFDIHVSN 176
AL +F+ M E EP++ T+ + L A + G + + +H Y + K G N+ +
Sbjct: 290 ALKVFQEMII-EGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNS---KLGT 345
Query: 177 CLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
L+D Y+KCGC+ A +FE + K++ WT +I+G AM G ++ F +M + +
Sbjct: 346 ALVDMYSKCGCVDEALLVFE--KLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRV 403
Query: 237 KPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAE 285
+PN +G +EGL+ F M+ + + P++ HYGC++D+L RAGRLE+A
Sbjct: 404 QPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAI 463
Query: 286 EVASGIPSQITNVVVWRTGFLRLLINSYF 314
+ +P + T VW F +I+ F
Sbjct: 464 KFIESMPMEPTP-GVWGALFSGCMIHKAF 491
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 157/325 (48%), Gaps = 31/325 (9%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
+ +H +P D T+ L++ L N Q +A K G +V +L +
Sbjct: 95 LRNHGVIP---DRHTFPLLLKAFSKLRNEN-PFQFYAHIVKFGLDFDAFVQNSLVSAFAH 150
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY 131
G++ S +LF E ++++V+W T +I+G R R+ EAL F M +
Sbjct: 151 CGYVDCSRRLFIETAKKDVVSW----------TALINGCLRNGRAVEALECFVEMRS-SG 199
Query: 132 TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191
E E+T+++VL A +V + +HG+ + G +D++V + L+D Y+KCG A
Sbjct: 200 VEVDEVTVVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDA 259
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS---------W 242
K+F + +NLVSW +I+G+ KEA++ F+ M G++PN+S
Sbjct: 260 VKVFNEMPT--RNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACA 317
Query: 243 RIG--EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
++G ++G ++ + V+ ++ + K L+D+ + G +++A V +P++ +V
Sbjct: 318 QLGSLDQG-RWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAK--DVYP 374
Query: 301 WRTGFLRLLINSYFFSPITLNSQRL 325
W L + S + L SQ +
Sbjct: 375 WTAMINGLAMRGDALSSLNLFSQMI 399
>gi|147864471|emb|CAN82639.1| hypothetical protein VITISV_028820 [Vitis vinifera]
Length = 871
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/301 (31%), Positives = 156/301 (51%), Gaps = 23/301 (7%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P F+ T+S + +LS LG Q+H KVG +V +L DMY G ++ +S
Sbjct: 226 PAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKAS 285
Query: 80 KLFDELPERNLV-----TWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134
+F LP + + + + + V W+ ++ GY + +AL F M C E
Sbjct: 286 VIFKHLPRESSMMNSEESCDDAVVESVSWSSMVSGYVQNGGFEDALKTFSSMI-CSQVEV 344
Query: 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
+ T+ +V+ A G + + +HGY +K G + D+ + + +ID Y KCG + A +
Sbjct: 345 DKFTLTSVVSACASAGVLELGRQVHGYIQKIG-HGLDVFLGSSIIDMYVKCGSLNDAWLI 403
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG--------- 245
F + + DR N+V WT++ISG A+HG G+EAV FE M G+ PN +G
Sbjct: 404 F-NQAKDR-NVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHAG 461
Query: 246 --EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE-VASGIPSQITNVVVWR 302
EEG K+F M E + P +H+ C++D+ RAGRL + +E + + S++++ VWR
Sbjct: 462 LLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSS--VWR 519
Query: 303 T 303
+
Sbjct: 520 S 520
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 106/244 (43%), Gaps = 37/244 (15%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT + ++ C + LG Q+H K+G V++ +++ DMYV G L D+ +F
Sbjct: 345 DKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDAWLIF 404
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++ +RN+V WT +I G + + EA+ LF M E P+E++ + V
Sbjct: 405 NQAKDRNVVL----------WTSMISGCALHGQGREAVRLFELMIN-EGITPNEVSFVGV 453
Query: 143 LPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G + C+ E G H + C++D Y + G + + + ++
Sbjct: 454 LTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFT-CMVDLYGRAGRLNEIKEFIHNNAIS 512
Query: 202 RKNLVSWTTIISGFAMHGM---------------------GKEAVENFERMQKVGLK--P 238
+ + V W + +S +H GK + + MQ+ G+K P
Sbjct: 513 KLSSV-WRSFLSSCRVHKNIEMGIWDLTFCFLAFVPLSKDGKRSAKIRSLMQQRGVKKNP 571
Query: 239 NRSW 242
++SW
Sbjct: 572 SQSW 575
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 107/248 (43%), Gaps = 45/248 (18%)
Query: 23 DSFTYSFLIRTCVT-LSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
+ FT S ++++C + ++ +G +H + G +N ++ D YV + KL
Sbjct: 96 NQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGVDLDAVLNNSILDYYVKCRCFGYAEKL 155
Query: 82 FDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEAL 120
F + E++ V+WN++++ ++ W +IDG R AL
Sbjct: 156 FGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVAL 215
Query: 121 ALFRRMAAC----EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN 176
L +M A S +LA ++ G+ + Q++ GF V N
Sbjct: 216 ELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGF------VRN 269
Query: 177 CLIDTYAKCGCIFSASKLFE-----------DTSVDRKNL--VSWTTIISGFAMHGMGKE 223
LID Y KCG + AS +F+ + S D + VSW++++SG+ +G ++
Sbjct: 270 SLIDMYCKCGEMEKASVIFKHLPRESSMMNSEESCDDAVVESVSWSSMVSGYVQNGGFED 329
Query: 224 AVENFERM 231
A++ F M
Sbjct: 330 ALKTFSSM 337
>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
Length = 601
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 144/269 (53%), Gaps = 30/269 (11%)
Query: 59 VYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNE 118
VYV +AL DMY G+ D+ K+F+E+P RNLV+W +I GY + NR E
Sbjct: 240 VYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIA----------GYVQCNRYKE 289
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGE--KRGFNAFDIHVSN 176
AL +F+ M E EP++ T+ + L A + G + + +H Y + K G N+ +
Sbjct: 290 ALKVFQEMII-EGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNS---KLGT 345
Query: 177 CLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
L+D Y+KCGC+ A +FE + K++ WT +I+G AM G ++ F +M + +
Sbjct: 346 ALVDMYSKCGCVDEALLVFE--KLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRV 403
Query: 237 KPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAE 285
+PN +G +EGL+ F M+ + + P++ HYGC++D+L RAGRLE+A
Sbjct: 404 QPNGVTFLGVLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAI 463
Query: 286 EVASGIPSQITNVVVWRTGFLRLLINSYF 314
+ +P + T VW F +I+ F
Sbjct: 464 KFIESMPMEPTP-GVWGALFSGCMIHKAF 491
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/325 (26%), Positives = 157/325 (48%), Gaps = 31/325 (9%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
+ +H +P D T+ L++ L N Q +A K G +V +L +
Sbjct: 95 LRNHGVIP---DRHTFPLLLKAFSKLRNEN-PFQFYAHIVKFGLDFDAFVQNSLVSAFAH 150
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY 131
G++ S +LF E ++++V+W T +I+G R R+ EAL F M +
Sbjct: 151 CGYVDCSRRLFIETAKKDVVSW----------TALINGCLRNGRAVEALECFVEMRS-SG 199
Query: 132 TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191
E E+TI++VL A +V + +HG+ + G +D++V + L+D Y+KCG A
Sbjct: 200 VEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDA 259
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS---------W 242
K+F + +NLVSW +I+G+ KEA++ F+ M G++PN+S
Sbjct: 260 VKVFNEMPT--RNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACA 317
Query: 243 RIG--EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
++G ++G ++ + V+ ++ + K L+D+ + G +++A V +P++ +V
Sbjct: 318 QLGSLDQG-RWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEALLVFEKLPAK--DVYP 374
Query: 301 WRTGFLRLLINSYFFSPITLNSQRL 325
W L + S + L SQ +
Sbjct: 375 WTAMINGLAMRGDALSSLNLFSQMI 399
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 121/294 (41%), Gaps = 53/294 (18%)
Query: 40 PNLGTQLHAV---FSKVGFQSHVYVNTAL-------GDMYVSLGFLKDSSK-------LF 82
P L T H++ F K G H+ T++ + L+ ++K LF
Sbjct: 2 PKLATLRHSILCCFHKCGTFDHLKQTTSILITSGLAHHTFFLSDILRSATKDLGYTLLLF 61
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D L + WN II G+S ++ L + R+ P T +
Sbjct: 62 DRLATPYIFLWNTIIR----------GFSASSQPQMVLVAYSRLRN-HGVIPDRHTFPLL 110
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFN-AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A K +RN Y F FD V N L+ +A CG + + +LF +T+
Sbjct: 111 LKAFSK---LRNENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETA-- 165
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN--------------RSWRIGEE 247
+K++VSWT +I+G +G EA+E F M+ G++ + R G
Sbjct: 166 KKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRW 225
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F+ VE V+ D+ L+D+ + G + A +V + +P++ N+V W
Sbjct: 226 VHGFY---VESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTR--NLVSW 274
>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Glycine max]
Length = 618
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 151/292 (51%), Gaps = 34/292 (11%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
F+ FT S ++ C QLHA K S+ +V TAL +Y +KD+S++
Sbjct: 142 FNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQM 201
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE-----PSE 136
F+ +PE+N VTW+ ++ G V+ +G+ EAL +FR + + S
Sbjct: 202 FESMPEKNAVTWSSMMAGYVQ-----NGFHE-----EALLIFRNAQLMGFDQDPFMISSA 251
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
++ A L + + +V H K GF + +I+VS+ LID YAKCGCI A +F+
Sbjct: 252 VSACAGLATLIEGKQV------HAISHKSGFGS-NIYVSSSLIDMYAKCGCIREAYLVFQ 304
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP---------NRSWRIG-- 245
++ +++V W +ISGFA H EA+ FE+MQ+ G P N +G
Sbjct: 305 GV-LEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGLH 363
Query: 246 EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITN 297
EEG K+FD MV + + P + HY C+IDIL RAG + +A ++ +P T+
Sbjct: 364 EEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLIERMPFNATS 415
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 100/211 (47%), Gaps = 14/211 (6%)
Query: 29 FLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPER 88
+L++ C G HA ++G + + + L +MY + + K F+E+P +
Sbjct: 48 YLLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVK 107
Query: 89 NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148
+LV+WN +I L + EAL L +M E T +E TI +VL
Sbjct: 108 SLVSWNTVIGALTQNA----------EDREALKLLIQMQR-EGTPFNEFTISSVLCNCAF 156
Query: 149 NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSW 208
+ C +H + K ++ + V L+ YAKC I AS++FE S+ KN V+W
Sbjct: 157 KCAILECMQLHAFSIKAAIDS-NCFVGTALLHVYAKCSSIKDASQMFE--SMPEKNAVTW 213
Query: 209 TTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+++++G+ +G +EA+ F Q +G +
Sbjct: 214 SSMMAGYVQNGFHEEALLIFRNAQLMGFDQD 244
>gi|357143748|ref|XP_003573036.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Brachypodium distachyon]
Length = 484
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/321 (30%), Positives = 162/321 (50%), Gaps = 43/321 (13%)
Query: 17 PLPPLFDSFTYSFLIRTCV-----TLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
P P + T ++ C L+ P L LHA+ K+ F ++ + T L Y++
Sbjct: 61 PAAPPPNDVTLLTVLSACAGDSSSALARP-LALSLHALAVKL-FPCNLLLCTCLARFYLA 118
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITGL---------------------VKWTGIIDGY 110
+ KLFD +P+R++VT+N +ITGL V WT +IDG
Sbjct: 119 SRLPHLAIKLFDSMPDRSVVTYNTMITGLMRNGLVAAAREVFDEMPAPDKVSWTALIDGC 178
Query: 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF 170
+ R +EA+ F M + EP +T++A + A + G + +H + +
Sbjct: 179 VKNGRHDEAIDCFHSMLR-DGVEPDYVTLVAAISACAEVGALGLGMWVHRFVVDKRLE-H 236
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
++ V+N LID YA+CG + A ++F + ++ +VSW ++I GFA +G +AVE+FE
Sbjct: 237 NVRVANSLIDMYARCGQVDFARQVF--GRIRKRTVVSWNSMIVGFAANGQYADAVEHFEA 294
Query: 231 MQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
M++ G KP+ G +EGL+++D M E + ++HYGC++D+L RAG
Sbjct: 295 MRREGFKPDTVTFTGVLTACSHAGLTDEGLRYYDAMRTEHGIAARMEHYGCVVDLLGRAG 354
Query: 280 RLEQAEEVASGIPSQITNVVV 300
RL +A V +P + VV+
Sbjct: 355 RLGEAMRVVESMPMRPNEVVL 375
>gi|297823557|ref|XP_002879661.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325500|gb|EFH55920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 500
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/329 (28%), Positives = 171/329 (51%), Gaps = 28/329 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD++ S +R+C + G+ H + K GF S VY+ ++L +Y G ++++ K+
Sbjct: 118 FDAYGLSSAVRSCGSNRDFRTGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVENAHKV 177
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F E+P+ N+V+ WT +I G+++ R + + L+ M ++P++ T A
Sbjct: 178 FAEMPDNNVVS----------WTAMISGFAQEWRVDICMKLYSEMRN-STSDPNDYTFTA 226
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+L A +G + + +H + G ++ +H+SN LI Y KCG + A ++F+ S
Sbjct: 227 LLSACTGSGALGQGRSVHCQTLQMGLKSY-LHISNSLISMYCKCGDLKDAFRIFDQFS-- 283
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQ-KVGLKPNRSWRIGE-----------EGL 249
K++VSW ++I+G+A +G+ +A+E FE M K G+KP+ +G EG
Sbjct: 284 NKDVVSWNSMIAGYAQYGLATQAIELFELMMPKSGIKPDAITYLGLLSSCRHAGLVIEGR 343
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLL 309
KFF+ M E + P++ HY CL+D+L R G L++A E+ +P + N V+W +
Sbjct: 344 KFFNLMAER-GLKPELNHYSCLVDLLGRFGLLQEALELIENMPMK-PNSVIWGSLLFSCR 401
Query: 310 INSYFFSPITLNSQRLFFFPAALYALTQI 338
++ + I +RL P Q+
Sbjct: 402 VHGDVWMGIRAAEERLILEPECAATHVQL 430
>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 1135
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 152/306 (49%), Gaps = 29/306 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++ T++ ++ CV + +H K GF YV AL DMY +G ++ S +F
Sbjct: 636 NATTFASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIF 695
Query: 83 DELPERNLVTWNVIITGLV---KWTGIIDGYSRMNR-----SNEALALFRRMAACEYTEP 134
+ +R++V+WN +ITG + ++ ++ M R ++ + + +P
Sbjct: 696 GRMNKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPF-KP 754
Query: 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
+ +T++ VLP + + IH Y K+ A D+ V + L+D YAKCGC+ AS++
Sbjct: 755 NSVTLMTVLPGCAALAALGKGKEIHAYAVKQKL-AMDVAVGSALVDMYAKCGCLNLASRV 813
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG------LKPNRSWRIG--- 245
F+ + +N+++W +I + MHG G+EA+E F M G ++PN I
Sbjct: 814 FDQMPI--RNVITWNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFA 871
Query: 246 --------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITN 297
+EGL F M V P HY CL+D+L R+GR+++A E+ + +PS +
Sbjct: 872 ACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNK 931
Query: 298 VVVWRT 303
V W +
Sbjct: 932 VDAWSS 937
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 131/308 (42%), Gaps = 44/308 (14%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVSLGFLKDSSKL 81
D T + ++ C L +G ++H + G + +V TAL DMY + K +
Sbjct: 533 DGVTLASVLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLV 592
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + R + WN ++ GY+R ++AL LF M + P+ T +
Sbjct: 593 FDGVVRRTVAVWN----------ALLAGYARNEFDDQALRLFVEMISESEFCPNATTFAS 642
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VLPA + + + IHGY KRGF D +V N L+D Y++ G + + +F ++
Sbjct: 643 VLPACVRCKVFSDKEGIHGYIVKRGFGK-DKYVQNALMDMYSRMGRVEISKTIF--GRMN 699
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEE---GLKFFDKMVEE 258
++++VSW T+I+G + G +A+ MQ+ + + E G+ F V
Sbjct: 700 KRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTL 759
Query: 259 CEVLP-------------------------DIKHYGCLIDILERAGRLEQAEEVASGIPS 293
VLP D+ L+D+ + G L A V +P
Sbjct: 760 MTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMP- 818
Query: 294 QITNVVVW 301
I NV+ W
Sbjct: 819 -IRNVITW 825
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 19/208 (9%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76
P P +S T ++ C L+ G ++HA K V V +AL DMY G L
Sbjct: 751 PFKP--NSVTLMTVLPGCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLN 808
Query: 77 DSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC-----EY 131
+S++FD++P RN++TWNV+I Y + EAL LFR M A E
Sbjct: 809 LASRVFDQMPIRNVITWNVLIM----------AYGMHGKGEEALELFRIMTAGGGSNREV 858
Query: 132 TEPSEITILAVLPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190
P+E+T +A+ A +G V L H G H + CL+D + G +
Sbjct: 859 IRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYA-CLVDLLGRSGRVKE 917
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMH 218
A +L + + +W++++ +H
Sbjct: 918 AYELINTMPSNLNKVDAWSSLLGACRIH 945
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 107/220 (48%), Gaps = 18/220 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQ--SHVYVNTALGDMYVSLGFLKDSSK 80
D+F + +++ + LG Q+HA K G S V V +L +MY G L + +
Sbjct: 329 DNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQ 388
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD++P+R+ V+WN +I L R +L LFR M + E +P+ T++
Sbjct: 389 VFDDIPDRDHVSWNSMIATLC----------RFEEWELSLHLFRLMLS-ENVDPTSFTLV 437
Query: 141 AVLPAIWK-NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+V A G VR + +H Y + G + +N L+ YA+ G + A LF
Sbjct: 438 SVAHACSHVRGGVRLGKQVHAYTLRNG--DLRTYTNNALVTMYARLGRVNDAKALF--GV 493
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D K+LVSW T+IS + + +EA+ M G++P+
Sbjct: 494 FDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPD 533
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 14/190 (7%)
Query: 42 LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV 101
LG Q+HA + G Y N AL MY LG + D+ LF ++LV+WN +I+ L
Sbjct: 452 LGKQVHAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSL- 509
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
S+ +R EAL ++ + + P +T+ +VLPA + +R + IH Y
Sbjct: 510 ---------SQNDRFEEAL-MYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIHCY 559
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
+ G + V L+D Y C +F+ V R+ + W +++G+A +
Sbjct: 560 ALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFD--GVVRRTVAVWNALLAGYARNEFD 617
Query: 222 KEAVENFERM 231
+A+ F M
Sbjct: 618 DQALRLFVEM 627
>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
Length = 913
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/320 (29%), Positives = 163/320 (50%), Gaps = 38/320 (11%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQ--SH 58
LV++++++ P D FT++ L++ C L P G Q+HA + GF S+
Sbjct: 406 LLVFREMRRRRRRHEDQHQP--DEFTFASLLKACGGLGAPREGAQVHAAMAASGFSTASN 463
Query: 59 VYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNE 118
+ AL DMYV G L + ++F+ L +N + +WT ++ G+++ + E
Sbjct: 464 AILAGALVDMYVKCGRLPVAMQVFERLERKNAI----------QWTTVVVGHAQEGQVME 513
Query: 119 ALALFRRMAACEYTEPSEI--TILAVLP--AIWKNGEVRNCQLIHGYGEKRGFNAFDIHV 174
AL LFRR + + +I+ VL A+ + G + +H YG K D+
Sbjct: 514 ALELFRRFWRSGARADAHVLSSIVGVLADFALVEQG-----RQVHCYGVKSPAGT-DVSA 567
Query: 175 SNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
N ++D Y KCG A ++F + + +N+VSWTT+I+G HG+G+EAV FE M+
Sbjct: 568 GNSIVDMYLKCGLPDEAERMFRE--IPARNVVSWTTMINGLGKHGLGREAVAMFEEMRAG 625
Query: 235 GLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQ 283
G++P+ + +E ++F + + V P +HY C++D+L RAG L +
Sbjct: 626 GVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELRE 685
Query: 284 AEEVASGIPSQITNVVVWRT 303
A ++ +P + T V VW+T
Sbjct: 686 ARDLIRTMPMEPT-VGVWQT 704
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/298 (25%), Positives = 134/298 (44%), Gaps = 31/298 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ +T S ++ C G +H + + G++ H V ++L +Y G + D+ ++F
Sbjct: 318 NEYTLSASLKACCVTEDMGAGVGIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVF 377
Query: 83 DELP-ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC-----EYTEPSE 136
D R L TWN +I+ GY+ +AL +FR M + +P E
Sbjct: 378 DCAGLGRGLATWNAMIS----------GYAHAGHGRDALLVFREMRRRRRRHEDQHQPDE 427
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN-AFDIHVSNCLIDTYAKCGCIFSASKLF 195
T ++L A G R +H GF+ A + ++ L+D Y KCG + A ++F
Sbjct: 428 FTFASLLKACGGLGAPREGAQVHAAMAASGFSTASNAILAGALVDMYVKCGRLPVAMQVF 487
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKM 255
E ++RKN + WTT++ G A G EA+E F R + G + + G+ +
Sbjct: 488 E--RLERKNAIQWTTVVVGHAQEGQVMEALELFRRFWRSGARADAHVLSSIVGVLADFAL 545
Query: 256 VEECEVL----------PDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
VE+ + D+ ++D+ + G ++AE + IP++ NVV W T
Sbjct: 546 VEQGRQVHCYGVKSPAGTDVSAGNSIVDMYLKCGLPDEAERMFREIPAR--NVVSWTT 601
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 98/215 (45%), Gaps = 12/215 (5%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76
P P+ + L+R S G QLH +K+GF S + L DMY G L
Sbjct: 210 PTNPMERRKMIADLLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELD 269
Query: 77 DSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE 136
+ ++F + +RN+V+W ++ G ++ + L L M A P+E
Sbjct: 270 MAGEVFGGMRDRNVVSWTALMVGFLQ----------HGDATGCLRLLGEMRAASEAAPNE 319
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
T+ A L A ++ IHG + G+ + V++ L+ Y+K G I A ++F+
Sbjct: 320 YTLSASLKACCVTEDMGAGVGIHGLCVRTGYEEHYV-VASSLVLLYSKGGRIGDARRVFD 378
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
+ R L +W +ISG+A G G++A+ F M
Sbjct: 379 CAGLGR-GLATWNAMISGYAHAGHGRDALLVFREM 412
>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
Length = 795
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 142/274 (51%), Gaps = 25/274 (9%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
L+ C G +HA + F HV + TAL +MY +G ++ S K+F ++ ++
Sbjct: 329 LLTACAQTESSLFGRSVHAYVVRRHFLPHVVLETALLEMYGKVGKVESSEKIFGQITDKT 388
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
LV+WN +I Y M EA+ALF + + P T+ V+PA
Sbjct: 389 LVSWN----------NMIAAYMYMEMYQEAIALFLELLN-QPLYPDYFTMTTVVPAFVLL 437
Query: 150 GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWT 209
G +R C+ +H Y K G+ + + N ++ YA+CG I ++ ++F+ + K+++SW
Sbjct: 438 GSIRQCKQMHSYIVKLGYGDSTL-IMNAVMHMYARCGNIVASREIFD--KMPGKDVISWN 494
Query: 210 TIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEE 258
TII G+A+HG GK A+E F+ M+ G++PN S + EG K F+ M +E
Sbjct: 495 TIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTACSVSGLEAEGWKEFNSMQQE 554
Query: 259 CEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
++P I+HYGC+ D+L RAG L + +P
Sbjct: 555 YGMIPQIEHYGCMTDLLGRAGELREVLRFIENMP 588
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 137/315 (43%), Gaps = 30/315 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ +++ C G HA K+G + VY +L +Y LG + D+ ++F
Sbjct: 119 DRFTFPVVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVF 178
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +P R++V+WN ++DGY ALA FR M + ++A
Sbjct: 179 DGMPARDIVSWNT----------MVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAA 228
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + + IHGY + G D+ V L+D Y KCG +F A +F +
Sbjct: 229 LAACCLESALALGREIHGYAIRHGLEQ-DVKVGTSLVDMYCKCGNVFFAENVFAKMPL-- 285
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP------NRSWRIGEEGLKFFDKMV 256
+ +V+W +I G+A++ +A + F +M+ G + N + F + V
Sbjct: 286 RTVVTWNCMIGGYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSV 345
Query: 257 EECEV----LPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINS 312
V LP + L+++ + G++E +E++ I + +V W +I +
Sbjct: 346 HAYVVRRHFLPHVVLETALLEMYGKVGKVESSEKIFGQITDK--TLVSWNN-----MIAA 398
Query: 313 YFFSPITLNSQRLFF 327
Y + + + LF
Sbjct: 399 YMYMEMYQEAIALFL 413
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 13/136 (9%)
Query: 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF 74
+ PL P D FT + ++ V L Q+H+ K+G+ + A+ MY G
Sbjct: 417 NQPLYP--DYFTMTTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGN 474
Query: 75 LKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134
+ S ++FD++P +++++WN II GY+ + AL +F M C EP
Sbjct: 475 IVASREIFDKMPGKDVISWNTIII----------GYAIHGQGKIALEMFDEM-KCSGMEP 523
Query: 135 SEITILAVLPAIWKNG 150
+E T ++VL A +G
Sbjct: 524 NESTFVSVLTACSVSG 539
>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
Length = 695
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 155/310 (50%), Gaps = 37/310 (11%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
S T ++ C + +L ++H S+ + + + AL + Y + G + + ++F
Sbjct: 236 SVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFR 295
Query: 84 ELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALAL 122
+ R++++W I+ G V+ WT +IDGY R NE+L +
Sbjct: 296 SMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEI 355
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
FR M + P E T+++VL A G + + I Y +K D+ V N LID Y
Sbjct: 356 FREMQSAGMI-PDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKN-DVVVGNALIDMY 413
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW 242
KCGC A K+F D +D+++ +WT ++ G A +G G+EA++ F +MQ + ++P+
Sbjct: 414 FKCGCSEKAQKVFHD--MDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDIT 471
Query: 243 RIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
+G ++ KFF KM + + P + HYGC++D+L RAG +++A E+ +
Sbjct: 472 YLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKM 531
Query: 292 PSQITNVVVW 301
P N +VW
Sbjct: 532 PMN-PNSIVW 540
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 146/319 (45%), Gaps = 40/319 (12%)
Query: 23 DSFTYSFLI----RTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
DS T+ FL+ R L+ G +LH K G S++YV AL MY G + +
Sbjct: 133 DSHTFPFLLNGLKRDGGALA---CGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMA 189
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
+FD + ++ +WN++I+ GY+RM E++ L M P+ +T
Sbjct: 190 RGVFDRRCKEDVFSWNLMIS----------GYNRMKEYEESIELLVEMER-NLVSPTSVT 238
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+L VL A K + C+ +H Y + + + N L++ YA CG + A ++F
Sbjct: 239 LLLVLSACSKVKDKDLCKRVHEYVSECKTEP-SLRLENALVNAYAACGEMDIAVRIFR-- 295
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG----------EEG 248
S+ ++++SWT+I+ G+ G K A F++M ++ SW I E
Sbjct: 296 SMKARDVISWTSIVKGYVERGNLKLARTYFDQMP---VRDRISWTIMIDGYLRAGCFNES 352
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI-PSQITNVVVWRTGFLR 307
L+ F +M + ++PD ++ G LE E + + I ++I N VV
Sbjct: 353 LEIFREM-QSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNA--- 408
Query: 308 LLINSYFFSPITLNSQRLF 326
LI+ YF + +Q++F
Sbjct: 409 -LIDMYFKCGCSEKAQKVF 426
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 113/242 (46%), Gaps = 27/242 (11%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT 132
G + + KLF ++PE ++V WN +I G+S+++ E + L+ M E
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWN----------NMIKGWSKVDCDGEGVRLYLNMLK-EGV 130
Query: 133 EPSEITILAVLPAIWKNGEVRNC-QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191
P T +L + ++G C + +H + K G + +++V N L+ Y+ CG + A
Sbjct: 131 TPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGS-NLYVQNALVKMYSLCGLMDMA 189
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP---------NRSW 242
+F+ ++++ SW +ISG+ +E++E M++ + P +
Sbjct: 190 RGVFDRRC--KEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACS 247
Query: 243 RIGEEGL-KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
++ ++ L K + V EC+ P ++ L++ G ++ A + + ++ +V+ W
Sbjct: 248 KVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKAR--DVISW 305
Query: 302 RT 303
+
Sbjct: 306 TS 307
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 86/199 (43%), Gaps = 18/199 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT ++ C L +G + K ++ V V AL DMY G + + K+F
Sbjct: 367 DEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVF 426
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++ +R+ TW ++ GL + + EA+ +F +M +P +IT L V
Sbjct: 427 HDMDQRDKFTWTAMVVGL----------ANNGQGQEAIKVFFQMQDMS-IQPDDITYLGV 475
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFD---IHVSNCLIDTYAKCGCIFSASKLFEDTS 199
L A +G V + + + R + + +H C++D + G + A ++
Sbjct: 476 LSACNHSGMVDQARKF--FAKMRSDHRIEPSLVHYG-CMVDMLGRAGLVKEAYEILRKMP 532
Query: 200 VDRKNLVSWTTIISGFAMH 218
++ ++V W ++ +H
Sbjct: 533 MNPNSIV-WGALLGASRLH 550
>gi|359490816|ref|XP_002271825.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g13600-like [Vitis vinifera]
Length = 702
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 146/315 (46%), Gaps = 42/315 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DSFT ++ C ++ G ++HA G + +V AL +MY LK + F
Sbjct: 276 DSFTLGSVLAACADMASLRRGKEVHAQAVVRGLHWNTFVGGALVEMYSKCEDLKAAQLAF 335
Query: 83 DELPERNLVTWNVIITG-------------------------LVKWTGIIDGYSRMNRSN 117
D + ER+ TWNV+I+G + W GII G+ +
Sbjct: 336 DGVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGHVENGHNE 395
Query: 118 EALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
AL LF M P T+ +LPA + + + +H + ++G+ D+H+
Sbjct: 396 LALRLFTEMQTSSL-RPDIYTVGIILPACARLATIARGKQVHAHSIRQGYE-LDVHIGAA 453
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
L+D YAKCG I A +++ + NLVS +++ +AMHG G E + F M G +
Sbjct: 454 LVDMYAKCGSIKHAMQVY--NRISNPNLVSQNAMLTAYAMHGHGDEGIALFRNMLGNGFR 511
Query: 238 PNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
P+ + E G +FFD M V P +KHY C++D+L RAGRL++A E
Sbjct: 512 PDHVTFLSVLSSCVHAGAVETGHEFFDLMTYY-NVTPSLKHYTCIVDLLSRAGRLDEAYE 570
Query: 287 VASGIPSQITNVVVW 301
+ IP + + V+W
Sbjct: 571 LVKKIPRK-PDSVMW 584
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 118/237 (49%), Gaps = 37/237 (15%)
Query: 13 HSH-SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
H+H S L DS TY+ L+ +C TL NLG Q+HA K GF H +V T L MY
Sbjct: 50 HTHLSLLDKQIDSSTYASLLESCRTL---NLGKQVHAHTLKTGFHGHEFVETKLLQMYGR 106
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY 131
G L D++ +F ++P+RNL +W I++ + GY EAL+LF ++
Sbjct: 107 FGCLDDANLVFVKMPQRNLYSWTAILS-----VHVDHGYFE-----EALSLFEKL----- 151
Query: 132 TEPSEITI-LAVLPAIWK-NGEVRNCQL---IHGYGEKR------------GFNAFDIHV 174
+ +I + V P + K G +R +L +HG KR GF+ ++
Sbjct: 152 -QLDDIGLEFFVFPVVLKLCGGLRVLELGRQLHGVVIKRCADMGSALKIFSGFSVKNVVS 210
Query: 175 SNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
N +I Y + G + A +LF+ + K+ +SW ++ISG+A + + EA+ F +
Sbjct: 211 YNTMIVGYCENGNVEKAKELFDQMELVGKDTISWNSMISGYADNLLFDEALSMFRDL 267
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 123/288 (42%), Gaps = 38/288 (13%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAV--------------FSKVGFQSHVYVNTALGDMYV 70
F + +++ C L LG QLH V FS ++ V NT + Y
Sbjct: 161 FVFPVVLKLCGGLRVLELGRQLHGVVIKRCADMGSALKIFSGFSVKNVVSYNTMIVG-YC 219
Query: 71 SLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE 130
G ++ + +LFD++ ++ + W +I GY+ +EAL++FR + E
Sbjct: 220 ENGNVEKAKELFDQME--------LVGKDTISWNSMISGYADNLLFDEALSMFRDLLMEE 271
Query: 131 YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190
E T+ +VL A +R + +H RG + ++ V L++ Y+KC + +
Sbjct: 272 GIEADSFTLGSVLAACADMASLRRGKEVHAQAVVRGLH-WNTFVGGALVEMYSKCEDLKA 330
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-RSWR------ 243
A F+ V ++ +W +ISG+A + ++M+ G +PN +W
Sbjct: 331 AQLAFD--GVTERDTATWNVLISGYACCNQLENIQNLIQKMKGDGFEPNVYTWNGIISGH 388
Query: 244 ----IGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
E L+ F +M + + PDI G ++ R + + ++V
Sbjct: 389 VENGHNELALRLFTEM-QTSSLRPDIYTVGIILPACARLATIARGKQV 435
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 158 IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAM 217
+H + K GF+ + V L+ Y + GC+ A+ +F + ++NL SWT I+S
Sbjct: 81 VHAHTLKTGFHGHEF-VETKLLQMYGRFGCLDDANLVF--VKMPQRNLYSWTAILSVHVD 137
Query: 218 HGMGKEAVENFERMQ--KVGLK 237
HG +EA+ FE++Q +GL+
Sbjct: 138 HGYFEEALSLFEKLQLDDIGLE 159
>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 607
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/304 (31%), Positives = 142/304 (46%), Gaps = 40/304 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++FT+ LIR C QLHA K GF Y L +Y + G L D+ ++F
Sbjct: 102 NAFTFPSLIRAC---KLEEEAKQLHAHVLKFGFGGDTYALNNLIHVYFAFGSLDDARRVF 158
Query: 83 DELPERNLVTWNVIITGL----------------------VKWTGIIDGYSRMNRSNEAL 120
+ + N+V+W +++G V W +I + + NR EA
Sbjct: 159 CTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAF 218
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
ALFRRM + E +L A G + IH Y EK G D ++ +ID
Sbjct: 219 ALFRRMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGI-VLDSKLATTIID 277
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
Y KCGC+ A +F V R + SW +I GFAMHG G++A+ F+ M++ +
Sbjct: 278 MYCKCGCLDKAFHVFCGLKVKR--VSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPD 335
Query: 241 SWR------------IGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
S + EEG +F MV+ + P +HYGC++D+L RAGRLE+A++V
Sbjct: 336 SITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAKKVI 395
Query: 289 SGIP 292
+P
Sbjct: 396 DEMP 399
>gi|118488304|gb|ABK95971.1| unknown [Populus trichocarpa]
Length = 749
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 154/286 (53%), Gaps = 25/286 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T +++ C +P +H V + G +++ V +AL D Y ++ + ++F
Sbjct: 350 DEVTLVNILQICKYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVF 409
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ R++V+W+ +I+G ++ + +EA+A+++ M + +P+ ITI+ +
Sbjct: 410 ARMRRRDVVSWSTMISG----------FAHCGKPDEAIAVYQEMDR-DLVKPNVITIINL 458
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A E++ + HG ++GF A ++ V ++D Y+KCG I ++ + F+ ++
Sbjct: 459 LEACSVTAELKRSKWAHGVAIRQGF-ASEVTVGTAVVDMYSKCGEILASRRAFDQLAL-- 515
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN+V+W+ +I+ + M+G+ EA+ F M++ GLKPN + EEGL
Sbjct: 516 KNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSL 575
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITN 297
F MV+E + P +HY C++D+L RAG+L+ A EV +P + N
Sbjct: 576 FKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMPDNLKN 621
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 107/208 (51%), Gaps = 14/208 (6%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T +I+ C L + G LH K GF + V +L MYV ++ + +LFDE+
Sbjct: 151 TMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVDAD-MECARELFDEM 209
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
E++++ W+V+I G ++W L +FR+M EP + +++VL A
Sbjct: 210 HEKDVIAWSVMIGGYLQW----------EEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKA 259
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
+ +V +L+HG RGF+ D+ V N LID Y+KC SA K+F + S ++N
Sbjct: 260 CASSRDVCTGRLVHGLVIHRGFDC-DLFVENSLIDMYSKCKDAGSAFKVFNEIS--QRNN 316
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQK 233
VSW +++SGF ++ EA M+K
Sbjct: 317 VSWNSMLSGFVLNENYSEAQSLISSMRK 344
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 148/331 (44%), Gaps = 38/331 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +++ C + G +H + GF ++V +L DMY + K+F
Sbjct: 249 DGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVF 308
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+ +RN V+WN +++G V + + YS EA +L M E E E+T++ +
Sbjct: 309 NEISQRNNVSWNSMLSGFV----LNENYS------EAQSLISSMRK-ERVETDEVTLVNI 357
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L +C+ IH +RG A ++ V + LID YAKC I A ++F + R
Sbjct: 358 LQICKYFVHPFHCKSIHCVMIRRGSEANEL-VLSALIDAYAKCYLIEIAWEVF--ARMRR 414
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVL 262
+++VSW+T+ISGFA G EA+ ++ M + +KPN + ++E C V
Sbjct: 415 RDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPN---------VITIINLLEACSVT 465
Query: 263 PDIKHYGCLIDILERAGRLEQAEEVASGIP-----SQITNVVVWRTGFLRLLIN-----S 312
++K + R G A EV G S+ ++ R F +L + S
Sbjct: 466 AELKRSKWAHGVAIRQGF---ASEVTVGTAVVDMYSKCGEILASRRAFDQLALKNIVTWS 522
Query: 313 YFFSPITLNSQRLFFFPAALYALTQILGFKP 343
+ +N L AL+A + G KP
Sbjct: 523 AMIAAYGMNG--LAHEALALFAEMKRHGLKP 551
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 106/226 (46%), Gaps = 27/226 (11%)
Query: 16 SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL 75
S PP+ ++++ LS+ + G LHA K GF S + ++ Y+ G
Sbjct: 49 SVFPPILKAWSF---------LSHRH-GKSLHACLIKQGFDSFTSIGNSIMGFYIRCGDF 98
Query: 76 KDSSKLFDELPE-RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134
+ +F+ + R+ V+WN++I G + ++ G +N +A F EP
Sbjct: 99 DIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAGLWWF--TNARVAGF---------EP 147
Query: 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
+ T++ V+ A G + ++HGY K GF A V N L+ Y + A +L
Sbjct: 148 NISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAIS-SVQNSLLSMYVDAD-MECAREL 205
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPN 239
F++ + K++++W+ +I G+ + ++ F +M V G++P+
Sbjct: 206 FDE--MHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPD 249
>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 580
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 155/292 (53%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S+T+ F+++ C L G +LH+ KVG + L +Y + G + + +F
Sbjct: 106 NSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMF 165
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+PE + +W+ +++ GY++ ++ EAL LFR M A E T+ +V
Sbjct: 166 DEMPEPDSASWSTMVS----------GYAQNGQAVEALKLFREMQA-ENVSSDAFTLASV 214
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ G + + +H Y +K G D+ + L+ Y+KCG + +A K+F+ +
Sbjct: 215 VGVCGDLGALDLGKWVHSYMDKEGVK-IDVVLGTALVGMYSKCGSLDNALKVFQGMA--E 271
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKF 251
+++ +W+T+I+G+A+HG G++A++ F+ M++ PN + E+G +
Sbjct: 272 RDVTAWSTMIAGYAIHGHGEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQI 331
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ M E ++ P IKHYGC++D+ RAG + A + +P + NVV+WRT
Sbjct: 332 FETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIE-PNVVLWRT 382
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 55/208 (26%), Positives = 92/208 (44%), Gaps = 13/208 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FT + ++ C L +LG +H+ K G + V + TAL MY G L ++ K+F
Sbjct: 207 DAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVF 266
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ ER++ W+ +I GY+ +AL LF M + T P+ +T +V
Sbjct: 267 QGMAERDVTAWSTMIA----------GYAIHGHGEKALQLFDAMKRSK-TIPNCVTFTSV 315
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A +G V I I C++D + + G + A K + ++
Sbjct: 316 LSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMVDLFCRAGMVGHAHKFIQTMPIE- 374
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFER 230
N+V W T++ HG K+ E+ R
Sbjct: 375 PNVVLWRTLLGACKTHGY-KDLGEHISR 401
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 98/214 (45%), Gaps = 16/214 (7%)
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
L W II GYS + A+AL+R M C + P+ T VL A K + Q +H
Sbjct: 72 LFMWNTIIRGYSISDSPITAIALYRDMFLCGIS-PNSYTFGFVLKACCKLLRLCEGQELH 130
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
K G + F+ + N LI YA CGC+ A +F++ + + SW+T++SG+A +G
Sbjct: 131 SQIVKVGLD-FETPLVNGLIKLYAACGCMDYACVMFDE--MPEPDSASWSTMVSGYAQNG 187
Query: 220 MGKEAVENFERMQKVGLKPNRSWRIGEEGL----------KFFDKMVEECEVLPDIKHYG 269
EA++ F MQ + + G+ K+ +++ V D+
Sbjct: 188 QAVEALKLFREMQAENVSSDAFTLASVVGVCGDLGALDLGKWVHSYMDKEGVKIDVVLGT 247
Query: 270 CLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
L+ + + G L+ A +V G+ + +V W T
Sbjct: 248 ALVGMYSKCGSLDNALKVFQGMAER--DVTAWST 279
>gi|147781801|emb|CAN65443.1| hypothetical protein VITISV_011420 [Vitis vinifera]
Length = 485
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 152/292 (52%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T L+ C L G LH+ ++G ++ VN A+ DMY ++ + ++F
Sbjct: 10 DEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDENLSVNNAILDMYCKCDDIESAQEVF 69
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + E+++++W +++GL K GY + E+LALFR+M EP EIT++ V
Sbjct: 70 NRIREKDVLSWTSMLSGLAK-----SGYFQ-----ESLALFRKMQL-HKIEPDEITLVGV 118
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + G + + IH +K N D+ + L+D YAKCG I A ++F V
Sbjct: 119 LSACAQTGALDQGKYIHLLIDKFEINC-DLVLETALVDMYAKCGSIDLALQVFRRMRV-- 175
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+N+ +W +I G AMHG G++A+ F++M+ L P+ I +EGL
Sbjct: 176 RNVFTWNAMIGGLAMHGHGEDAISLFDQMEXDKLMPDDVTFIALLCACSHAGLVDEGLAM 235
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F M + ++ P ++HYGC++D+L RA +++ A +P + N V+W T
Sbjct: 236 FQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIK-ANSVLWAT 286
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 109/209 (52%), Gaps = 17/209 (8%)
Query: 126 MAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC 185
M + P E+T+++++PA + G + +L+H Y ++ G + ++ V+N ++D Y KC
Sbjct: 1 MTKLDNLRPDEVTMVSLVPACAQLGNLERGKLLHSYSKELGLDE-NLSVNNAILDMYCKC 59
Query: 186 GCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG 245
I SA ++F + K+++SWT+++SG A G +E++ F +MQ ++P+ +G
Sbjct: 60 DDIESAQEVF--NRIREKDVLSWTSMLSGLAKSGYFQESLALFRKMQLHKIEPDEITLVG 117
Query: 246 -----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
++G K+ ++++ E+ D+ L+D+ + G ++ A +V + +
Sbjct: 118 VLSACAQTGALDQG-KYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRM--R 174
Query: 295 ITNVVVWRTGFLRLLINSYFFSPITLNSQ 323
+ NV W L ++ + I+L Q
Sbjct: 175 VRNVFTWNAMIGGLAMHGHGEDAISLFDQ 203
>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
mitochondrial-like [Brachypodium distachyon]
Length = 652
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 136/248 (54%), Gaps = 26/248 (10%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y G + D+ K+FDE+PER++ WN ++TG Y + R EAL LF M
Sbjct: 298 YAQFGLMDDARKVFDEMPERDVFPWNALMTG----------YVQCKRGKEALRLFHDMQE 347
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
EP +IT++ +L A + G + +H Y ++R + + + L+D Y+KCG I
Sbjct: 348 A-MVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRV-SLSVMLGTNLVDMYSKCGNI 405
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG--- 245
A ++F++ + KN ++WT +ISG A HG A++ F+RM ++GL+P+ IG
Sbjct: 406 EKAIRVFKE--IPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGVLS 463
Query: 246 --------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITN 297
+EG +FF MV + + +KHY C++D+L RAG L++AE + + +P + +
Sbjct: 464 ACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPME-PD 522
Query: 298 VVVWRTGF 305
VVW F
Sbjct: 523 AVVWGALF 530
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 142/324 (43%), Gaps = 64/324 (19%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ FL++ C L N G + +GF + V+V A + ++ KLF
Sbjct: 119 DHLTFPFLLKACARLQERNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARKLF 178
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D R+LV+WN +I GY R EAL +F RM P E+T++ V
Sbjct: 179 DGSHVRDLVSWNT----------LIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGV 228
Query: 143 LPAIWKNGEVRNCQL---IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+ + ++R+ +L +HGY E G + + N ++D Y KCG + A +FE
Sbjct: 229 VSG---SAQLRDLELGRRLHGYVESHGVRC-TVRLMNVVMDMYIKCGDLERAKSVFE--G 282
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW-------RIGEEGLKFF 252
+D+K +VSWTT+I G+A G+ +A + F+ M + + P + + G+E L+ F
Sbjct: 283 IDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGYVQCKRGKEALRLF 342
Query: 253 DKMVEECEVLPD----------------------IKHY-------------GCLIDILER 277
M +E V PD + HY L+D+ +
Sbjct: 343 HDM-QEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSK 401
Query: 278 AGRLEQAEEVASGIPSQITNVVVW 301
G +E+A V IP + N + W
Sbjct: 402 CGNIEKAIRVFKEIPEK--NALTW 423
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 97/227 (42%), Gaps = 30/227 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T L+ C L +G +H + V + T L DMY G ++ + ++F
Sbjct: 353 DDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSKCGNIEKAIRVF 412
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E+PE+N +TW +I+GL + ++ A+ F+RM +P EIT + V
Sbjct: 413 KEIPEKNALTWTAMISGL----------ANHGHADVAIKYFQRMIELGL-QPDEITFIGV 461
Query: 143 LPAIWKNGEVRNCQ-----LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
L A G V+ Q ++ Y +R + +C++D + G + A L
Sbjct: 462 LSACCHAGLVKEGQEFFSLMVSKYHLERKMKHY-----SCMVDLLGRAGYLDEAEHLVNT 516
Query: 198 TSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKPNRS 241
++ + V W + MHG +G++A M+ V L P S
Sbjct: 517 MPME-PDAVVWGALFFACRMHGNITLGEKAA-----MKLVELDPGDS 557
>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g40405
gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 612
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 160/324 (49%), Gaps = 39/324 (12%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
+ S + L P D++T +FL++ C L G Q+H + + GF + +V T L +Y
Sbjct: 98 LSSGNDLKP--DNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAE 155
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGY 110
LG L K+F+ +P + V ++T + W +I GY
Sbjct: 156 LGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGY 215
Query: 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF 170
+++ S EAL +F M E + + + +++VL A + G + + H Y E+
Sbjct: 216 AQVGESREALNVFHLMQL-EGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIK-I 273
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
+ ++ L+D YAKCG + A ++F ++ KN+ +W++ ++G AM+G G++ +E F
Sbjct: 274 TVRLATTLVDLYAKCGDMEKAMEVF--WGMEEKNVYTWSSALNGLAMNGFGEKCLELFSL 331
Query: 231 MQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
M++ G+ PN + +EG + FD M E + P ++HYGCL+D+ RAG
Sbjct: 332 MKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAG 391
Query: 280 RLEQAEEVASGIPSQITNVVVWRT 303
RLE A + +P + + VW +
Sbjct: 392 RLEDAVSIIQQMPMK-PHAAVWSS 414
>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 151/291 (51%), Gaps = 30/291 (10%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
FT +++ C ++ G Q H K G+++ +Y TAL DMY GF D+ K FD
Sbjct: 315 FTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDF 374
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
L E +LV WT II GY + ++ EAL+++ RM + P+E+T+ +VL
Sbjct: 375 LLEPDLVL----------WTSIIAGYVQNGKNEEALSMYGRMQMRKIL-PNELTMASVLK 423
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A + + IH K G ++ + + L YAKCG + +F + +++
Sbjct: 424 ACSNLAALEQGKQIHARTIKYGLGP-ELSIRSALSTMYAKCGSLEEGVLIFR--RMLQRD 480
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKFFD 253
+VSW +ISG + +G G+EA+E FE M+ G KP+ I + G +F+
Sbjct: 481 IVSWNAMISGLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACSHMGIVKRGWAYFN 540
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITN--VVVWR 302
M +E ++P ++HY C++D+L RAG+L +A+E I S I + + +WR
Sbjct: 541 MMFDEFCLVPRVEHYACMVDVLSRAGKLNEAKEF---IESAIIDHGMCLWR 588
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/218 (32%), Positives = 108/218 (49%), Gaps = 14/218 (6%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
+ F ++ ++ V + + G Q+H V K G V V AL MY G L S L
Sbjct: 211 LNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNLNYSLML 270
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+ ++N +TW+ +IT GYS+ S++AL LF +M + PSE T++
Sbjct: 271 FEMCSDKNAITWSALIT----------GYSQAGDSHKALKLFSKMHYAGFV-PSEFTLVG 319
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL A + + HGY K G+ I+ + L+D YAK G A K F+ +
Sbjct: 320 VLKACSDVAAIEEGKQTHGYLLKSGYET-QIYTATALVDMYAKFGFTGDARKGFD--FLL 376
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+LV WT+II+G+ +G +EA+ + RMQ + PN
Sbjct: 377 EPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPN 414
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 106/215 (49%), Gaps = 19/215 (8%)
Query: 36 TLSYPNLGT-----QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
T + NLG Q+H + K V+V ++L + Y +G + ++ KLFD +PERNL
Sbjct: 119 TAAALNLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNL 178
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
V+ WT +I GY+ + EAL +F M E +E +VL A+
Sbjct: 179 VS----------WTTMISGYASKQMAKEALGVFGLMRLVE-GNLNEFVFTSVLSALVCPE 227
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
V + + +H K G F + V N L+ YAKCG + + LFE S KN ++W+
Sbjct: 228 FVDSGKQVHCVVVKNGVLEF-VSVLNALVTMYAKCGNLNYSLMLFEMCS--DKNAITWSA 284
Query: 211 IISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG 245
+I+G++ G +A++ F +M G P+ +G
Sbjct: 285 LITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVG 319
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 103/233 (44%), Gaps = 34/233 (14%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L + T + +++ C L+ G Q+HA K G + + +AL MY G L++
Sbjct: 412 LPNELTMASVLKACSNLAALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVL 471
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F + +R++V+WN +I+GL + +G+ R EAL LF M E T+P IT +
Sbjct: 472 IFRRMLQRDIVSWNAMISGLSQ-----NGHGR-----EALELFEEM-RLEGTKPDHITFV 520
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN-----------CLIDTYAKCGCIF 189
VL A G V KRG+ F++ C++D ++ G +
Sbjct: 521 TVLSACSHMGIV-----------KRGWAYFNMMFDEFCLVPRVEHYACMVDVLSRAGKLN 569
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW 242
A + E +D + W ++ H + E++ ++G + + ++
Sbjct: 570 EAKEFIESAIIDH-GMCLWRILLPACRNHCNYELGAYAGEKLMELGSRESSAY 621
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 152 VRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTI 211
++ Q++H + K + + +++N LI YAKCG + A +FE+ + KN+VS+ +
Sbjct: 23 LKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAKLVFEN--LKHKNVVSYNCL 80
Query: 212 ISGFAMHGMGKE--AVENFERMQKVGLKPN 239
I G + +G +E F RM + P+
Sbjct: 81 IHGLSHNGSKGSNFVLELFRRMIANNILPD 110
>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g16860-like [Vitis vinifera]
Length = 852
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 144/253 (56%), Gaps = 26/253 (10%)
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELP--ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNE 118
V AL DMY K + +FD +P +R++VTW V+I G ++ +NE
Sbjct: 411 VINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLI----------GGNAQHGEANE 460
Query: 119 ALALFRRMAACE-YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
AL LF +M + + P+ TI L A + G +R + IH Y + F + + V+NC
Sbjct: 461 ALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANC 520
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
LID Y+K G + +A +F++ + ++N VSWT++++G+ MHG G+EA++ F MQKVGL
Sbjct: 521 LIDMYSKSGDVDAARVVFDN--MHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLV 578
Query: 238 PN-----------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
P+ + ++G+ +F+ M ++ V+P +HY C++D+L RAGRL++A E
Sbjct: 579 PDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAME 638
Query: 287 VASGIPSQITNVV 299
+ G+P + T V
Sbjct: 639 LIRGMPMKPTPAV 651
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 134/275 (48%), Gaps = 22/275 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +T+ F+++ C + G +HAV GF+ +V+V L MY G +++ ++F
Sbjct: 125 DHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVF 184
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ ER + LV W I+ Y + S A+ +F RM P ++++ V
Sbjct: 185 DEMRERG-------VGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNV 237
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LPA G + +HGY + G D+ V N ++D YAKCG + A+K+FE V
Sbjct: 238 LPACASVGAWSRGKQVHGYALRSGLFE-DVFVGNAVVDMYAKCGMMEEANKVFERMKV-- 294
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-RSWR----------IGEEGLKF 251
K++VSW +++G++ G +A+ FE++++ ++ N +W +G E L
Sbjct: 295 KDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDV 354
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
F +M C P++ L+ AG L +E
Sbjct: 355 FRQM-RLCGSEPNVVTLVSLLSGCALAGTLLHGKE 388
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 123/248 (49%), Gaps = 36/248 (14%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ + ++ C ++ + G Q+H + G V+V A+ DMY G +++++K+F
Sbjct: 230 DAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVF 289
Query: 83 DELPERNLVTWNVIITG-------------------------LVKWTGIIDGYSRMNRSN 117
+ + +++V+WN ++TG +V W+ +I GY++
Sbjct: 290 ERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGF 349
Query: 118 EALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN------AFD 171
EAL +FR+M C +EP+ +T++++L G + + + H + K N D
Sbjct: 350 EALDVFRQMRLCG-SEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDD 408
Query: 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
+ V N LID Y+KC +A +F+ +++V+WT +I G A HG EA+E F +M
Sbjct: 409 LMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQM 468
Query: 232 QKVGLKPN 239
L+P+
Sbjct: 469 ----LQPD 472
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 15/194 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHV-YVNTALGDMYVSLGFLKDSSKL 81
++FT S + C L G Q+HA + F+S + +V L DMY G + + +
Sbjct: 478 NAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVV 537
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + +RN V+W ++T GY R EAL +F M P +T +
Sbjct: 538 FDNMHQRNGVSWTSLMT----------GYGMHGRGEEALQIFYEMQKVGLV-PDGVTFVV 586
Query: 142 VLPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
VL A +G V + +G + G H + C++D ++ G + A +L +
Sbjct: 587 VLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYA-CMVDLLSRAGRLDEAMELIRGMPM 645
Query: 201 DRKNLVSWTTIISG 214
V W ++S
Sbjct: 646 KPTPAV-WVALLSA 658
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 55/256 (21%), Positives = 93/256 (36%), Gaps = 43/256 (16%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN------TALGDMYV 70
P PPL T+ F + T L Q ++ S + V T + MY+
Sbjct: 10 PKPPLLFLTTFFFSTASSTTDLTSTLFHQCKSLASAELIHQQLLVQGLPHDPTHIISMYL 69
Query: 71 SLGFLKDSSKLFDEL-PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC 129
+ + + L P + V W W +I + + L L+RRM
Sbjct: 70 TFNSPAKALSVLRRLHPSSHTVFW---------WNQLIRRSVHLGFLEDVLQLYRRMQRL 120
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
+ P T VL A + R +H GF +++ V N L+ Y +CG
Sbjct: 121 GW-RPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFE-WNVFVGNGLVSMYGRCGAWE 178
Query: 190 SASKLFEDT-SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEG 248
+A ++F++ +LVSW +I++ + G A
Sbjct: 179 NARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRA------------------------ 214
Query: 249 LKFFDKMVEECEVLPD 264
+K F++M E+ + PD
Sbjct: 215 MKMFERMTEDLGIRPD 230
>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g15930
gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 155/310 (50%), Gaps = 37/310 (11%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
S T ++ C + +L ++H S+ + + + AL + Y + G + + ++F
Sbjct: 236 SVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFR 295
Query: 84 ELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALAL 122
+ R++++W I+ G V+ WT +IDGY R NE+L +
Sbjct: 296 SMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEI 355
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
FR M + P E T+++VL A G + + I Y +K D+ V N LID Y
Sbjct: 356 FREMQSAGMI-PDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKN-DVVVGNALIDMY 413
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW 242
KCGC A K+F D +D+++ +WT ++ G A +G G+EA++ F +MQ + ++P+
Sbjct: 414 FKCGCSEKAQKVFHD--MDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDIT 471
Query: 243 RIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
+G ++ KFF KM + + P + HYGC++D+L RAG +++A E+ +
Sbjct: 472 YLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKM 531
Query: 292 PSQITNVVVW 301
P N +VW
Sbjct: 532 PMN-PNSIVW 540
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 146/319 (45%), Gaps = 40/319 (12%)
Query: 23 DSFTYSFLI----RTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
DS T+ FL+ R L+ G +LH K G S++YV AL MY G + +
Sbjct: 133 DSHTFPFLLNGLKRDGGALA---CGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMA 189
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
+FD + ++ +WN++I+ GY+RM E++ L M P+ +T
Sbjct: 190 RGVFDRRCKEDVFSWNLMIS----------GYNRMKEYEESIELLVEMER-NLVSPTSVT 238
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+L VL A K + C+ +H Y + + + N L++ YA CG + A ++F
Sbjct: 239 LLLVLSACSKVKDKDLCKRVHEYVSECKTEP-SLRLENALVNAYAACGEMDIAVRIFR-- 295
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG----------EEG 248
S+ ++++SWT+I+ G+ G K A F++M ++ SW I E
Sbjct: 296 SMKARDVISWTSIVKGYVERGNLKLARTYFDQMP---VRDRISWTIMIDGYLRAGCFNES 352
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI-PSQITNVVVWRTGFLR 307
L+ F +M + ++PD ++ G LE E + + I ++I N VV
Sbjct: 353 LEIFREM-QSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNA--- 408
Query: 308 LLINSYFFSPITLNSQRLF 326
LI+ YF + +Q++F
Sbjct: 409 -LIDMYFKCGCSEKAQKVF 426
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 113/242 (46%), Gaps = 27/242 (11%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT 132
G + + KLF ++PE ++V WN +I G+S+++ E + L+ M E
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWN----------NMIKGWSKVDCDGEGVRLYLNMLK-EGV 130
Query: 133 EPSEITILAVLPAIWKNGEVRNC-QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191
P T +L + ++G C + +H + K G + +++V N L+ Y+ CG + A
Sbjct: 131 TPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGS-NLYVQNALVKMYSLCGLMDMA 189
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP---------NRSW 242
+F+ ++++ SW +ISG+ +E++E M++ + P +
Sbjct: 190 RGVFDRRC--KEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACS 247
Query: 243 RIGEEGL-KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
++ ++ L K + V EC+ P ++ L++ G ++ A + + ++ +V+ W
Sbjct: 248 KVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKAR--DVISW 305
Query: 302 RT 303
+
Sbjct: 306 TS 307
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 86/199 (43%), Gaps = 18/199 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT ++ C L +G + K ++ V V AL DMY G + + K+F
Sbjct: 367 DEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVF 426
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++ +R+ TW ++ GL + + EA+ +F +M +P +IT L V
Sbjct: 427 HDMDQRDKFTWTAMVVGL----------ANNGQGQEAIKVFFQMQDMS-IQPDDITYLGV 475
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFD---IHVSNCLIDTYAKCGCIFSASKLFEDTS 199
L A +G V + + + R + + +H C++D + G + A ++
Sbjct: 476 LSACNHSGMVDQARKF--FAKMRSDHRIEPSLVHYG-CMVDMLGRAGLVKEAYEILRKMP 532
Query: 200 VDRKNLVSWTTIISGFAMH 218
++ ++V W ++ +H
Sbjct: 533 MNPNSIV-WGALLGASRLH 550
>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
Length = 651
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 151/295 (51%), Gaps = 38/295 (12%)
Query: 42 LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE-RNLVTWNVIITGL 100
LG+ +HA+ K G ++V AL Y G + ++FDELP R+++TWN ++ G
Sbjct: 164 LGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGY 223
Query: 101 VK---------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
V+ W+ ++ GY + AL +FR M + P++ +
Sbjct: 224 VRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVE-QGVRPNQAAV 282
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+ L A + G + + + +H ++ G ++V L+D YAKCGC+ A ++F+
Sbjct: 283 VTALSAAARLGLLEHGKFVHNVVQRSGMPVC-MNVGAALVDMYAKCGCVAVAREVFD--G 339
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
+ R+++ +W +I G A HG+G++AVE FER GL P +G EG
Sbjct: 340 MRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEG 399
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++F +VE+ + P+++HYGC++D+L RAG + +A E+ G+ + V+W T
Sbjct: 400 RRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGM-HIAPDPVLWGT 453
>gi|115484703|ref|NP_001067495.1| Os11g0213500 [Oryza sativa Japonica Group]
gi|77549336|gb|ABA92133.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113644717|dbj|BAF27858.1| Os11g0213500 [Oryza sativa Japonica Group]
gi|125576589|gb|EAZ17811.1| hypothetical protein OsJ_33354 [Oryza sativa Japonica Group]
Length = 470
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 147/289 (50%), Gaps = 34/289 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D ++ ++R C L LG +H ++G +V V AL DMY GFL D+ ++F
Sbjct: 102 DGYSVPAVVRACAELPDAVLGGVIHGFAVRLGLMGNVVVAAALLDMYAKAGFLDDAVRVF 161
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ ER+ V WN ++ GY+R R+ E +F R + + + L
Sbjct: 162 DEMTERDAVVWNCMVA----------GYARAGRAVETFEIFSR---AQVEAVNMVNGLQA 208
Query: 143 LPAIW----KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+P++ K GE+ + IHG + DI V N LI+ YAKCG + + +F +
Sbjct: 209 VPSVLNICAKEGELMKGREIHGRMVRCLAFDSDIAVGNALINMYAKCGRVNVSQAVF--S 266
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW-------------RIG 245
+ ++++VSW+T+I +++HG G++A++ + M G+KPN W +
Sbjct: 267 GMQQRDVVSWSTMIHSYSIHGKGEQALKVYMEMLSEGVKPN--WITFTSVLSSCSHSGLV 324
Query: 246 EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
EG K F+ M + V P +HY C++D+L RAG +E+A + +P +
Sbjct: 325 TEGRKIFESMTKVHGVHPAAEHYACMVDLLGRAGAIEEAVGLIRKMPME 373
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 75/304 (24%), Positives = 130/304 (42%), Gaps = 48/304 (15%)
Query: 28 SFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE 87
S L+R C G Q HA G+ + T L MY G + + ++FD +
Sbjct: 10 SGLLRRCAAAGAVRPGEQAHARAVVGGWLPDATLETDLVLMYCRCGERRRARRVFDGMRA 69
Query: 88 RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC-----EYTEPSEITILAV 142
++ +NV++ + +A+ +F R+ A Y+ P+ + A
Sbjct: 70 PSMHAYNVLLAA--------------SPPRDAMEVFSRLLASGLRPDGYSVPAVVRACAE 115
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LP G +IHG+ + G ++ V+ L+D YAK G + A ++F++ +
Sbjct: 116 LPDAVLGG------VIHGFAVRLGLMG-NVVVAAALLDMYAKAGFLDDAVRVFDEMT--E 166
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFER-----------MQKVGLKPNRSWRIGE--EGL 249
++ V W +++G+A G E E F R +Q V N + GE +G
Sbjct: 167 RDAVVWNCMVAGYARAGRAVETFEIFSRAQVEAVNMVNGLQAVPSVLNICAKEGELMKGR 226
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLL 309
+ +MV DI LI++ + GR+ ++ V SG+ Q +VV W T +
Sbjct: 227 EIHGRMVRCLAFDSDIAVGNALINMYAKCGRVNVSQAVFSGM--QQRDVVSWST-----M 279
Query: 310 INSY 313
I+SY
Sbjct: 280 IHSY 283
>gi|359492699|ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g19720-like [Vitis vinifera]
Length = 1545
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 164/337 (48%), Gaps = 78/337 (23%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T + I C +L G +LH+V K+G + V +L DMY G L+D+ ++F
Sbjct: 355 NGVTVTSGISACASLKALKKGMELHSVAVKIGCVEDLLVGNSLIDMYSKSGELEDARRVF 414
Query: 83 DELPER-----------------------------------NLVTWNVIITGLVK----- 102
D + ++ N+VTWN +I+G ++
Sbjct: 415 DMILKKDVYTWNSMIGGYCQAGYCGKAYDLFIKMHESDVPPNVVTWNAMISGYIQNGDED 474
Query: 103 ---------------------WTGIIDGYSRMNRSNEALALFRRMAA-CEYTEPSEITIL 140
W +I GY + N+AL +FR+M + C P+ +T+L
Sbjct: 475 QAMDLFHRMEKDGLIKRDTASWNSLIAGYLQNGHKNKALGIFRQMQSFC--IRPNSVTML 532
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
++LPA + + IHG +R + ++ V+NCLIDTYAK G I A +F+ +
Sbjct: 533 SILPACANLVAAKKVKEIHGCILRRNLGS-ELSVANCLIDTYAKSGNIVYAQTIFQ--GI 589
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
K+++SW ++I+G+ +HG A++ F++M K+G+KP+R + ++G
Sbjct: 590 SSKDIISWNSLIAGYVLHGCSDSALDLFDQMTKMGVKPSRGTFLSIIYAFSLSGMVDKGK 649
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
+ F M+E+ ++LP ++H+ +ID+L R+G+L +A E
Sbjct: 650 QVFSSMMEDYQILPGLEHHSAMIDLLGRSGKLGEAIE 686
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 136/275 (49%), Gaps = 31/275 (11%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGF--QSHVYVNTALGDMYVSLGFLKDSSKLFD 83
TY L+++C+ LG +LHA ++G + + +V T L MY G L ++ K+F
Sbjct: 87 TYMQLLQSCIDQGSAELGRKLHA---RIGLLEEMNPFVETKLVSMYAKCGSLGEARKVFG 143
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
E+ ERNL W+ +I YSR E + F M + P E + +L
Sbjct: 144 EMRERNLYA----------WSAMIGAYSREQMWREVVQHFFFMME-DGIVPDEFLLPKIL 192
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
A G+ +LIH + G N F+I VSN ++ YAKCG + A + FE+ +D +
Sbjct: 193 QACGNCGDAETGKLIHSLVIRCGMN-FNIRVSNSILAVYAKCGRLSCARRFFEN--MDYR 249
Query: 204 NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-SWRI----------GEEGLKFF 252
+ VSW +II+G+ G +++ + FE+MQ+ G++P +W I ++ ++
Sbjct: 250 DRVSWNSIITGYCQKGELEKSHQLFEKMQEEGIEPGLVTWNILINSYSQSGKCDDAMELM 309
Query: 253 DKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
KM E ++PD+ + +I + R QA E+
Sbjct: 310 KKM-ESFRIVPDVFTWTSMISGFAQNNRRSQALEL 343
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 113/277 (40%), Gaps = 64/277 (23%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D F +++ C G +H++ + G ++ V+ ++ +Y G L + + F
Sbjct: 184 DEFLLPKILQACGNCGDAETGKLIHSLVIRCGMNFNIRVSNSILAVYAKCGRLSCARRFF 243
Query: 83 DELPERNLVTWNVIIT-------------------------GLVKW-------------- 103
+ + R+ V+WN IIT GLV W
Sbjct: 244 ENMDYRDRVSWNSIITGYCQKGELEKSHQLFEKMQEEGIEPGLVTWNILINSYSQSGKCD 303
Query: 104 ---------------------TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
T +I G+++ NR ++AL LFR M EP+ +T+ +
Sbjct: 304 DAMELMKKMESFRIVPDVFTWTSMISGFAQNNRRSQALELFREMLLAG-IEPNGVTVTSG 362
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A ++ +H K G D+ V N LID Y+K G + A ++F+ + +
Sbjct: 363 ISACASLKALKKGMELHSVAVKIGC-VEDLLVGNSLIDMYSKSGELEDARRVFD--MILK 419
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
K++ +W ++I G+ G +A + F +M + + PN
Sbjct: 420 KDVYTWNSMIGGYCQAGYCGKAYDLFIKMHESDVPPN 456
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 91/219 (41%), Gaps = 24/219 (10%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
+++Q+Q I +S T ++ C L ++H + S + V
Sbjct: 515 IFRQMQSFCIRP--------NSVTMLSILPACANLVAAKKVKEIHGCILRRNLGSELSVA 566
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
L D Y G + + +F + +++++WN +I GY S+ AL L
Sbjct: 567 NCLIDTYAKSGNIVYAQTIFQGISSKDIISWNSLIA----------GYVLHGCSDSALDL 616
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEV-RNCQLIHGYGEK-RGFNAFDIHVSNCLID 180
F +M +PS T L+++ A +G V + Q+ E + + H + +ID
Sbjct: 617 FDQMTKMG-VKPSRGTFLSIIYAFSLSGMVDKGKQVFSSMMEDYQILPGLEHH--SAMID 673
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
+ G + A + ED +++ + + W +++ +HG
Sbjct: 674 LLGRSGKLGEAIEFIEDMAIEPDSCI-WAALLTASKIHG 711
>gi|357141789|ref|XP_003572348.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
chloroplastic-like [Brachypodium distachyon]
Length = 555
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 134/253 (52%), Gaps = 35/253 (13%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYS 111
G L + K+FDE+P RNLV+WN ++ G +V WT +I GY+
Sbjct: 224 GLLPLARKMFDEMPVRNLVSWNTMVRGYAVNGEMNDARELFDRMPEKDVVSWTCMISGYA 283
Query: 112 RMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN-AF 170
+ E L LFR M + P+E+T+++VL A + + H + +K
Sbjct: 284 QARCYTETLELFRAMQSESNVLPNEVTMVSVLSACAHLTALEEGRWAHAFIDKHKMVLDS 343
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
+ ++ LID Y+KCG A K+F S+D+KN+ +W +I+G A++G + +++ FE+
Sbjct: 344 EFNLGAALIDMYSKCGRTDLAVKIFH--SLDQKNVSAWNALITGLAVNGDVRSSIDVFEQ 401
Query: 231 MQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
M++ G KPN +G +EG + F M C V P+ KHYGC++D+L RAG
Sbjct: 402 MRRSGEKPNGITFVGVLTACAHGGLVDEGRRCFQSMASTCGVQPEAKHYGCMVDMLGRAG 461
Query: 280 RLEQAEEVASGIP 292
LE+AEE+ +P
Sbjct: 462 LLEEAEELIRSMP 474
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/263 (25%), Positives = 107/263 (40%), Gaps = 73/263 (27%)
Query: 23 DSFTYSFLIRTCVTL-SYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D FT+ L+++ L S+P G Q+HA + G V+V L MY + + ++
Sbjct: 77 DRFTFPSLLKSASRLASFPRTGAQVHAQAVRRGLLVDVFVVNTLLAMYAAFRDTRSMREV 136
Query: 82 FDELPE-RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
FD +LVTWN ++ G VK I EA +F +M
Sbjct: 137 FDSCAGVADLVTWNTMLGGYVKCGEI----------GEARRVFEQMPQ------------ 174
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS-NCLIDTYAKCGCIFSASKLFEDTS 199
+NG VS + ++ YA G + A ++F++
Sbjct: 175 -------RNG-----------------------VSWSAMVGAYAGAGELDVAREMFDEMP 204
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI--------GE--EGL 249
+N+VSW ++I+GFA HG+ A + F+ M L SW GE +
Sbjct: 205 AIGRNVVSWNSMITGFARHGLLPLARKMFDEMPVRNLV---SWNTMVRGYAVNGEMNDAR 261
Query: 250 KFFDKMVEECEVLPDIKHYGCLI 272
+ FD+M E+ D+ + C+I
Sbjct: 262 ELFDRMPEK-----DVVSWTCMI 279
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 77/201 (38%), Gaps = 25/201 (12%)
Query: 4 YKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSK--VGFQSHVYV 61
Y + +++ S L + T ++ C L+ G HA K + S +
Sbjct: 288 YTETLELFRAMQSESNVLPNEVTMVSVLSACAHLTALEEGRWAHAFIDKHKMVLDSEFNL 347
Query: 62 NTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGI---IDGYSRMNRSNE 118
AL DMY G + K+F L ++N+ WN +ITGL + ID + +M RS E
Sbjct: 348 GAALIDMYSKCGRTDLAVKIFHSLDQKNVSAWNALITGLAVNGDVRSSIDVFEQMRRSGE 407
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNG---EVRNCQLIHGYGEKRGFNAFDIHVS 175
+P+ IT + VL A G E R C G H
Sbjct: 408 --------------KPNGITFVGVLTACAHGGLVDEGRRC--FQSMASTCGVQPEAKHY- 450
Query: 176 NCLIDTYAKCGCIFSASKLFE 196
C++D + G + A +L
Sbjct: 451 GCMVDMLGRAGLLEEAEELIR 471
>gi|297848882|ref|XP_002892322.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
gi|297338164|gb|EFH68581.1| hypothetical protein ARALYDRAFT_311694 [Arabidopsis lyrata subsp.
lyrata]
Length = 1329
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 96/341 (28%), Positives = 161/341 (47%), Gaps = 70/341 (20%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
S+TYS L++ S G L A K GF HV + T L Y + G ++++ K+FD
Sbjct: 878 SYTYSSLVQASAFAS--GFGESLQAHIWKFGFGFHVQIQTTLIGFYSASGRIREARKVFD 935
Query: 84 ELPER-------------------------------NLVTWNVIITG------------- 99
E+PER N TWN +I G
Sbjct: 936 EMPERDDVTWTTMVSAYRQVLDMDSANSLANQMPEKNEATWNCLIDGYTRLGNLELAESL 995
Query: 100 --------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGE 151
++ WT +I+GYSR R EA+A+F +M E P E+T+ V+ A G
Sbjct: 996 FNQMPVKDIISWTTMINGYSRNKRYREAIAVFYKMME-EGIIPDEVTMSTVISACAHLGV 1054
Query: 152 VRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTI 211
+ + +H Y + GF D+++ + L+D Y+KCG + A +F ++ +KNL W +I
Sbjct: 1055 LEIGKEVHMYTVQNGF-VLDVYIGSALVDMYSKCGSLERALLVF--FNLPKKNLFCWNSI 1111
Query: 212 ISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECE 260
I G A HG +EA++ F +M+ +KPN + EEG + + M+++
Sbjct: 1112 IEGLAAHGFAQEALKMFAKMEMESVKPNTVTFVSVFTACTHAGLVEEGRRIYRSMIDDYS 1171
Query: 261 VLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
++ +++HYGC++ + +AG + +A E+ + + N V+W
Sbjct: 1172 IVSNVEHYGCMVHLFSKAGLIYEALELIGSMEFE-PNAVIW 1211
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 96/201 (47%), Gaps = 22/201 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T S +I C L +G ++H + GF VY+ +AL DMY G L+ + +F
Sbjct: 1038 DEVTMSTVISACAHLGVLEIGKEVHMYTVQNGFVLDVYIGSALVDMYSKCGSLERALLVF 1097
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
LP++NL WN II GL G+++ EAL +F +M E +P+ +T ++V
Sbjct: 1098 FNLPKKNLFCWNSIIEGLAA-----HGFAQ-----EALKMFAKMEM-ESVKPNTVTFVSV 1146
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN-----CLIDTYAKCGCIFSASKLFED 197
A G V + I+ + + + I VSN C++ ++K G I+ A +L
Sbjct: 1147 FTACTHAGLVEEGRRIY----RSMIDDYSI-VSNVEHYGCMVHLFSKAGLIYEALELIGS 1201
Query: 198 TSVDRKNLVSWTTIISGFAMH 218
+ N V W ++ G +H
Sbjct: 1202 MEFE-PNAVIWGALLDGCRIH 1221
>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 741
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 143/271 (52%), Gaps = 29/271 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ C LG Q+H GF S++ + AL D+Y G L+ + LF
Sbjct: 265 DESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLF 324
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ LP +++++WN +I GY+ MN EAL LF+ M T P+++T+L++
Sbjct: 325 ERLPYKDVISWNTLI----------GGYTHMNLYKEALLLFQEMLRSGET-PNDVTMLSI 373
Query: 143 LPAIWKNGEVRNCQLIHGYGEKR---GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
LPA G + + IH Y +KR NA + S LID YAKCG I +A ++F S
Sbjct: 374 LPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTS--LIDMYAKCGDIEAAHQVF--NS 429
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
+ K+L SW +I GFAMHG + + F RM+K+G++P+ +G + G
Sbjct: 430 ILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLG 489
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
F M ++ ++ P ++HYGC+ID+L +G
Sbjct: 490 RHIFRTMTQDYKMTPKLEHYGCMIDLLGHSG 520
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 149/306 (48%), Gaps = 41/306 (13%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L +S+T+ F++++C G Q+H K+G +YV+T+L MYV G L+D+ K
Sbjct: 131 LPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHK 190
Query: 81 LFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEA 119
+FD+ P R++V++ +I G +V W +I GY+ EA
Sbjct: 191 VFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEA 250
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
L LF+ M P E T++ V+ A ++G + + +H + + GF + ++ + N LI
Sbjct: 251 LELFKDMMKTN-VRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGS-NLKIVNALI 308
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D Y+KCG + +A LFE + K+++SW T+I G+ + KEA+ F+ M + G PN
Sbjct: 309 DLYSKCGELETACGLFE--RLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 366
Query: 240 R--------------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAE 285
+ IG + DK ++ ++ LID+ + G +E A
Sbjct: 367 DVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLR--TSLIDMYAKCGDIEAAH 424
Query: 286 EVASGI 291
+V + I
Sbjct: 425 QVFNSI 430
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 83/345 (24%), Positives = 141/345 (40%), Gaps = 66/345 (19%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV-SLGF--LKDSSKLFDELP 86
L+ C TL + +HA K+G + Y + L + + S F L + +F +
Sbjct: 39 LLHNCKTLQSLRI---IHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQ 95
Query: 87 ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI 146
E NL+ WN + G ++ + AL L+ M + P+ T VL +
Sbjct: 96 EPNLLIWNTMFRG----------HALSSDPVSALKLYVCMISLGLL-PNSYTFPFVLKSC 144
Query: 147 WKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT-------- 198
K+ + Q IHG+ K G + D++V LI Y + G + A K+F+ +
Sbjct: 145 AKSKAFKEGQQIHGHVLKLGCD-LDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSY 203
Query: 199 ---------------------SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
+ K++VSW +ISG+A G KEA+E F+ M K ++
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 263
Query: 238 PNRSWRI------GEEGLKFFDKMV----EECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
P+ S + + G + V ++ ++K LID+ + G LE A +
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 323
Query: 288 ASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAAL 332
+P + +V+ W T LI Y + + L + L F L
Sbjct: 324 FERLPYK--DVISWNT-----LIGGY--THMNLYKEALLLFQEML 359
>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
Length = 813
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 147/282 (52%), Gaps = 26/282 (9%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
+R C +L + +G QLHA+ +K G + + +L MY G + + LFDE+ ++
Sbjct: 347 LRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDT 406
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
V+++ +++ GY + R+ EA +F++M AC EP T+++++PA
Sbjct: 407 VSYSALVS----------GYVQNGRAEEAFLVFKKMQACN-VEPDAATMVSLIPACSHLA 455
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
+++ + HG RG A + + N LID YAKCG I + ++F + +++VSW T
Sbjct: 456 ALQHGRCSHGSVIIRGL-ASETSICNALIDMYAKCGRIDLSRQVF--NMMPSRDIVSWNT 512
Query: 211 IISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGE-----------EGLKFFDKMVEEC 259
+I+G+ +HG+GKEA F M +G P+ I EG +F M
Sbjct: 513 MIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGY 572
Query: 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ P ++HY C++D+L R G L++A E +P + +V VW
Sbjct: 573 GLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLR-ADVRVW 613
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 127/272 (46%), Gaps = 43/272 (15%)
Query: 51 SKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGY 110
SK V + TAL DMY G L + ++FD +P RN VTW + +I G+
Sbjct: 265 SKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTW----------SALIGGF 314
Query: 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF 170
+R +A LF+ M A S +I + L A +R + +H K G +A
Sbjct: 315 VLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHA- 373
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
D+ N L+ YAK G I A LF++ +V K+ VS++ ++SG+ +G +EA F++
Sbjct: 374 DLTAGNSLLSMYAKAGLIDQAIALFDEMAV--KDTVSYSALVSGYVQNGRAEEAFLVFKK 431
Query: 231 MQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGC-------------------L 271
MQ ++P+ + + ++ C L ++H C L
Sbjct: 432 MQACNVEPDAATMV---------SLIPACSHLAALQHGRCSHGSVIIRGLASETSICNAL 482
Query: 272 IDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
ID+ + GR++ + +V + +PS+ ++V W T
Sbjct: 483 IDMYAKCGRIDLSRQVFNMMPSR--DIVSWNT 512
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 130/287 (45%), Gaps = 41/287 (14%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+++T+ F ++ C L+ + G +H G Q+ ++V+TAL DMYV L D++ +F
Sbjct: 124 NNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIF 183
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALA-LFRRMAACEYTEPSEITILA 141
+P R+LV WN ++ GY+ + A+A L P+ T++A
Sbjct: 184 ATMPARDLVAWNAMLA----------GYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVA 233
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAF---------DIHVSNCLIDTYAKCGCIFSAS 192
+LP + + G + +H Y + ++ + + L+D YAKCG + A
Sbjct: 234 LLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYAR 293
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG---LKPNR--------- 240
++F+ ++ +N V+W+ +I GF + +A F+ M G L P
Sbjct: 294 RVFD--AMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACA 351
Query: 241 ---SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
R+GE+ ++ + V D+ L+ + +AG ++QA
Sbjct: 352 SLDHLRMGEQ----LHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 394
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 108/255 (42%), Gaps = 36/255 (14%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
+++ G L + LFD++P ++ T+N +I S + + L L+RRM
Sbjct: 67 HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSS--------SSPTAAADGLHLYRRMLR 118
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
P+ T L A + + IH + G A D+ VS L+D Y KC C+
Sbjct: 119 -HRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQA-DLFVSTALLDMYVKCACL 176
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENF--ERMQKVGLKPNRSWRIG- 245
A+ +F ++ ++LV+W +++G+A HGM AV + +MQ L+PN S +
Sbjct: 177 PDAAHIF--ATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVAL 234
Query: 246 ----------EEGLKFFDKMVEEC--------EVLPDIKHYG-CLIDILERAGRLEQAEE 286
+G + C L D G L+D+ + G L A
Sbjct: 235 LPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARR 294
Query: 287 VASGIPSQITNVVVW 301
V +P++ N V W
Sbjct: 295 VFDAMPAR--NEVTW 307
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 115/292 (39%), Gaps = 56/292 (19%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
FLV+K++Q + D+ T LI C L+ G H G S
Sbjct: 426 FLVFKKMQACNVEP--------DAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETS 477
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
+ AL DMY G + S ++F+ +P R++V+WN +I GY EA
Sbjct: 478 ICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIA----------GYGIHGLGKEAT 527
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQ-----LIHGYGEKRGFNAFDIHVS 175
ALF M + P +T + +L A +G V + + HGYG +
Sbjct: 528 ALFLEMNNLGF-PPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYI---- 582
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
C++D ++ G + A + + + R ++ W ++ ++ +N + +KV
Sbjct: 583 -CMVDLLSRGGFLDEAYEFIQSMPL-RADVRVWVALLGACRVY-------KNIDLGKKVS 633
Query: 236 LKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+G EG F VL L +I AGR ++A EV
Sbjct: 634 ---RMIQELGPEGTGNF--------VL--------LSNIYSAAGRFDEAAEV 666
>gi|296089078|emb|CBI38781.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 150/296 (50%), Gaps = 30/296 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++TY F++ C L LG + H K GF S ++V AL Y + G + +F
Sbjct: 110 DNYTYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVF 169
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE R++VTWN+ +I+ + S +A L M + P E+T++++
Sbjct: 170 DESTVRDVVTWNI----------MINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSL 219
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIH----VSNCLIDTYAKCGCIFSASKLFEDT 198
+PA + G + + +H Y ++ + F+I+ + L+D YAKCG I A ++F
Sbjct: 220 VPACAQLGNLERGKFLHSYSKE--LDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRM 277
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EE 247
V +N+ +W +I G AMHG G++A+ F++M+ L P+ I +E
Sbjct: 278 RV--RNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDE 335
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
GL F M + ++ P ++HYGC++D+L RA +++ A +P + N V+W T
Sbjct: 336 GLAMFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIK-ANSVLWAT 390
>gi|224132434|ref|XP_002328268.1| predicted protein [Populus trichocarpa]
gi|222837783|gb|EEE76148.1| predicted protein [Populus trichocarpa]
Length = 749
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 154/286 (53%), Gaps = 25/286 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T +++ C +P +H V + G +++ V +AL D Y ++ + ++F
Sbjct: 350 DEVTLVNILQICKYFVHPFHCKSIHCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVF 409
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ R++V+W+ +I+G ++ + +EA+A+++ M + +P+ ITI+ +
Sbjct: 410 ARMRRRDVVSWSTMISG----------FAHCGKPDEAIAVYQEMDR-DLVKPNVITIINL 458
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A E++ + HG ++GF A ++ V ++D Y+KCG I ++ + F+ ++
Sbjct: 459 LEACSVTAELKRSKWAHGVAIRQGF-ASEVTVGTAVVDMYSKCGEILASRRAFDQLAL-- 515
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN+V+W+ +I+ + M+G+ EA+ F M++ GLKPN + EEGL
Sbjct: 516 KNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVLAACSHGGLVEEGLSL 575
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITN 297
F MV+E + P +HY C++D+L RAG+L+ A EV +P + N
Sbjct: 576 FKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMPHNLKN 621
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 107/208 (51%), Gaps = 14/208 (6%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T +I+ C L + G LH K GF + V +L MYV ++ + +LFDE+
Sbjct: 151 TMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVDAD-MECARELFDEM 209
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
E++++ W+V+I G ++W L +FR+M EP + +++VL A
Sbjct: 210 HEKDVIAWSVMIGGYLQW----------EEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKA 259
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
+ +V +L+HG RGF+ D+ V N LID Y+KC SA K+F + S ++N
Sbjct: 260 CASSRDVCTGRLVHGLVIHRGFDC-DLFVENSLIDMYSKCKDAGSAFKVFNEIS--QRNN 316
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQK 233
VSW +++SGF ++ EA M+K
Sbjct: 317 VSWNSMLSGFVLNENYSEAQSLISSMRK 344
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 148/331 (44%), Gaps = 38/331 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +++ C + G +H + GF ++V +L DMY + K+F
Sbjct: 249 DGVVMVSVLKACASSRDVCTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVF 308
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+ +RN V+WN +++G V + + YS EA +L M E E E+T++ +
Sbjct: 309 NEISQRNNVSWNSMLSGFV----LNENYS------EAQSLISSMRK-ERVETDEVTLVNI 357
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L +C+ IH +RG A ++ V + LID YAKC I A ++F + R
Sbjct: 358 LQICKYFVHPFHCKSIHCVMIRRGSEANEL-VLSALIDAYAKCYLIEIAWEVF--ARMRR 414
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVL 262
+++VSW+T+ISGFA G EA+ ++ M + +KPN + ++E C V
Sbjct: 415 RDVVSWSTMISGFAHCGKPDEAIAVYQEMDRDLVKPN---------VITIINLLEACSVT 465
Query: 263 PDIKHYGCLIDILERAGRLEQAEEVASGIP-----SQITNVVVWRTGFLRLLIN-----S 312
++K + R G A EV G S+ ++ R F +L + S
Sbjct: 466 AELKRSKWAHGVAIRQGF---ASEVTVGTAVVDMYSKCGEILASRRAFDQLALKNIVTWS 522
Query: 313 YFFSPITLNSQRLFFFPAALYALTQILGFKP 343
+ +N L AL+A + G KP
Sbjct: 523 AMIAAYGMNG--LAHEALALFAEMKRHGLKP 551
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 106/226 (46%), Gaps = 27/226 (11%)
Query: 16 SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL 75
S PP+ ++++ LS+ + G LHA K GF S + ++ Y+ G
Sbjct: 49 SVFPPILKAWSF---------LSHRH-GKSLHACLIKQGFDSFTSIGNSIMGFYIRCGDF 98
Query: 76 KDSSKLFDELPE-RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134
+ +F+ + R+ V+WN++I G + ++ G +N +A F EP
Sbjct: 99 DIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAGLWWF--TNARVAGF---------EP 147
Query: 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
+ T++ V+ A G + ++HGY K GF A V N L+ Y + A +L
Sbjct: 148 NISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAIS-SVQNSLLSMYVDAD-MECAREL 205
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPN 239
F++ + K++++W+ +I G+ + ++ F +M V G++P+
Sbjct: 206 FDE--MHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPD 249
>gi|224097410|ref|XP_002310922.1| predicted protein [Populus trichocarpa]
gi|222850742|gb|EEE88289.1| predicted protein [Populus trichocarpa]
Length = 554
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 105/353 (29%), Positives = 176/353 (49%), Gaps = 53/353 (15%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHA-VFSKVGFQSHVYVNTALGDMYVSL-----GFLK 76
D+ TYSFL+ C + G Q+H+ V + + S+V++ + L + Y ++ L
Sbjct: 125 DAHTYSFLLAACTSSLSLREGQQVHSKVLTNGYYSSNVFLMSKLVNFYAAVVGGEGAALA 184
Query: 77 DSSKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNR 115
+ K+FD++ ERN+V WN ++ G +V WT +I GY++ +
Sbjct: 185 SARKVFDDMSERNVVCWNSMLAGYMRRGNLDGARRIFYEMPERNVVSWTTMISGYAKNGK 244
Query: 116 SNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR--GFNA-FDI 172
+AL LF +M E ++ +LA L A + G+++ IH Y + G N +
Sbjct: 245 CKQALNLFDQMRKAG-VELDQVVLLAALTACAELGDLKMGMWIHSYIQDTFVGSNQRVLV 303
Query: 173 HVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQ 232
++N LI YA CG I A ++F + ++ VSWT++I+ FA G + +E F MQ
Sbjct: 304 SLNNALIHMYASCGMIDEAYEVFR--WMPERSAVSWTSLITAFAKQGYAQAVLEIFRSMQ 361
Query: 233 KVGL---KPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERA 278
++G +P+ IG +EG + F M++ + P I+HYGC++D+L RA
Sbjct: 362 RLGTSEARPDGITFIGVLCACSHAGLVDEGRQLFKDMIQRWGIKPRIEHYGCMVDLLSRA 421
Query: 279 GRLEQAEEVASGIPSQITNVVVWRT--GFLRLLINSYFFSPITLNSQRLFFFP 329
G L++A+E+ + +P + N VW G R N+ S L SQ+L P
Sbjct: 422 GFLDEAQELIATMPVKPNN-AVWGALLGGCRFYRNAELAS---LVSQKLVAEP 470
>gi|10178273|emb|CAC08331.1| putative protein [Arabidopsis thaliana]
Length = 1280
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 149/314 (47%), Gaps = 46/314 (14%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D TY FL+++ LS LG LH K G + +++ L MY S + K
Sbjct: 851 LPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARK 910
Query: 81 LFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEA 119
LFDE+P +NLVTWN I+ +V W+ +IDGY + N+A
Sbjct: 911 LFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKA 970
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIH------ 173
L +F +M ++ +E+T+++V+ A G + + +H Y D+H
Sbjct: 971 LEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRY-------ILDVHLPLTVI 1023
Query: 174 VSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
+ LID YAKCG I A +F SV + + W II G A HG +E+++ F +M++
Sbjct: 1024 LQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRE 1083
Query: 234 VGLKPNR-----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLE 282
+ P+ + +E FF K ++E P +HY C++D+L RAG ++
Sbjct: 1084 SKIDPDEITFLCLLAACSHGGLVKEAWHFF-KSLKESGAEPKSEHYACMVDVLSRAGLVK 1142
Query: 283 QAEEVASGIPSQIT 296
A + S +P + T
Sbjct: 1143 DAHDFISEMPIKPT 1156
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 75/171 (43%), Gaps = 12/171 (7%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL--ALFRRMAACE 130
G + ++S +FD + E L N + +++ S+ N S+ L A + M C
Sbjct: 155 GLVDEASSVFDRVREMGLCVPNAYT-----YNCLLEAISKSNSSSVELVEARLKEMRDCG 209
Query: 131 YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190
+ + T+ VL G+ + RG+ D H+S L+ ++ K G +
Sbjct: 210 F-HFDKFTLTPVLQVYCNTGKSERALSVFNEILSRGW--LDEHISTILVVSFCKWGQVDK 266
Query: 191 ASKLFE--DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
A +L E + R N ++ +I GF +A + FE+M+++G+ +
Sbjct: 267 AFELIEMLEERDIRLNYKTYCVLIHGFVKESRIDKAFQLFEKMRRMGMNAD 317
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 85/230 (36%), Gaps = 26/230 (11%)
Query: 54 GFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRM 113
GF+ + T L G D+ K D+ V + +V T IDG +
Sbjct: 539 GFEPWIKHTTFLVKKLCENGRAVDACKYLDD------VAGEGFLGHMVASTAAIDGLIKN 592
Query: 114 NRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIH 173
+ L LFR + A + P I ++ A+ K ++ +G +
Sbjct: 593 EGVDRGLELFRDICANGHC-PDVIAYHVLIKALCKACRTMEADILFNEMVSKGLKP-TVA 650
Query: 174 VSNCLIDTYAKCGCIFSASKLFEDTSVDRKN--LVSWTTIISGFAMHGMGKEAVENFERM 231
N +ID + K G I D KN ++++T++I G G EA+ + M
Sbjct: 651 TYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASGRPSEAIFRWNEM 710
Query: 232 QKVGLKPNR-------------SWRIGEEGLKFFDKMVEECEVLPDIKHY 268
+ PNR W E L +F +M EE E+ PD Y
Sbjct: 711 KGKDCYPNRITFMALIQGLCKCGW--SGEALVYFREM-EEKEMEPDSAVY 757
>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 868
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 153/311 (49%), Gaps = 37/311 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T+ ++R C G Q+HA SKVGF+ + TA+ +MY G + ++ ++F
Sbjct: 363 NKVTFMSILRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVF 422
Query: 83 DELPERNLVTWNVIIT---------------------GLVKWTGIIDGYSRMNRSNEALA 121
++ +N+V W ++ +V W +I GY++ +
Sbjct: 423 SKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFE 482
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
L M A E +P +T++ +L A + +L+H K G + D V+ LI
Sbjct: 483 LLSSMKA-EGFQPDRVTVITILEACGALAGLERGKLVHAEAVKLGLES-DTVVATSLIGM 540
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR- 240
Y+KCG + A +F+ S ++ V+W +++G+ HG G EAV+ F+RM K + PN
Sbjct: 541 YSKCGQVAEARTVFDKMS--NRDTVAWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEI 598
Query: 241 --------SWRIG--EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
R G +EG + F M E+ ++ P +HYGC++D+L RAGRL++AEE
Sbjct: 599 TLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQS 658
Query: 291 IPSQITNVVVW 301
+P + ++ VW
Sbjct: 659 MPCE-PDISVW 668
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 146/310 (47%), Gaps = 40/310 (12%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
F +Y+Q+ Q I SP ++ T+ L+ +C T N G ++H+ S+ G ++ +
Sbjct: 243 FELYEQMLQAGI---SP-----NAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMI 294
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
V AL MY ++++ ++FD + +R++++W+ +I G + GY +E
Sbjct: 295 VANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQ-----SGYKDKESIDEVF 349
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
L RM E P+++T +++L A +G + + IH K GF D + + +
Sbjct: 350 QLLERMRR-EGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFE-LDRSLQTAIFN 407
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
YAKCG I+ A ++F + + KN+V+WT+ +S + G A + F M P R
Sbjct: 408 MYAKCGSIYEAEQVF--SKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEM------PTR 459
Query: 241 ---SWRIGEEGLKFFDKMVEECEVLPDIKHYG------CLIDILE--------RAGRLEQ 283
SW + G +V+ E+L +K G +I ILE G+L
Sbjct: 460 NVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERGKLVH 519
Query: 284 AEEVASGIPS 293
AE V G+ S
Sbjct: 520 AEAVKLGLES 529
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 151/304 (49%), Gaps = 34/304 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T+ +++ C S G ++H + +G ++ V V TAL MY G + + ++F
Sbjct: 156 NRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVF 215
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++ ERN+V+ WT II ++ + NEA L+ +M + P+ +T +++
Sbjct: 216 HKMTERNVVS----------WTAIIQANAQHRKLNEAFELYEQMLQAGIS-PNAVTFVSL 264
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + + + IH + +RG D+ V+N LI Y KC + A ++F+ S +
Sbjct: 265 LNSCNTPEALNRGRRIHSHISERGLET-DMIVANALITMYCKCNSVQEAREIFDRMS--K 321
Query: 203 KNLVSWTTIISGFAMHG-MGKEAVEN----FERMQKVGLKPNRSWRIG-----------E 246
++++SW+ +I+G+A G KE+++ ERM++ G+ PN+ + E
Sbjct: 322 RDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALE 381
Query: 247 EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFL 306
+G + ++ + L D + ++ + G + +AE+V S + ++ NVV W T FL
Sbjct: 382 QGRQIHAELSKVGFEL-DRSLQTAIFNMYAKCGSIYEAEQVFSKMANK--NVVAW-TSFL 437
Query: 307 RLLI 310
+ I
Sbjct: 438 SMYI 441
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 14/219 (6%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L +S TY +I C G +H ++G + +Y+ +L + Y + + +
Sbjct: 53 LVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQ 112
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F + R++VT W+ +I Y+ N +A F RM EP+ IT L
Sbjct: 113 VFRRMTLRDVVT----------WSSMIAAYAGNNHPAKAFDTFERMTDAN-IEPNRITFL 161
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
++L A + + IH + G D+ V+ LI Y+KCG I A ++F +
Sbjct: 162 SILKACNNYSILEKGRKIHTIVKAMGMET-DVAVATALITMYSKCGEISVACEVFHKMT- 219
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+N+VSWT II A H EA E +E+M + G+ PN
Sbjct: 220 -ERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPN 257
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 80/157 (50%), Gaps = 17/157 (10%)
Query: 156 QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGF 215
+++H ++ G DI++ N LI+ Y+K + SA ++F ++ +++V+W+++I+ +
Sbjct: 76 KMVHKQLDELGVE-IDIYLGNSLINFYSKFEDVASAEQVFRRMTL--RDVVTWSSMIAAY 132
Query: 216 AMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKFFDKMVEECEVLPD 264
A + +A + FERM ++PNR ++ I E+G K +V+ + D
Sbjct: 133 AGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKIH-TIVKAMGMETD 191
Query: 265 IKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ LI + + G + A EV + + NVV W
Sbjct: 192 VAVATALITMYSKCGEISVACEVFHKMTER--NVVSW 226
>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 145/273 (53%), Gaps = 25/273 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++T++ +I++C L G +H GF S VYV TAL Y G L ++ K+F
Sbjct: 110 SNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVF 169
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++ +R++VTWN +I GY + + EA+ LF RM EP+ T ++V
Sbjct: 170 DKMRDRSVVTWN----------SMISGYEQNGFAKEAIRLFDRMKEIG-VEPNSATFVSV 218
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G +H Y G + ++ + LI+ Y +CG + A ++F+ S+
Sbjct: 219 LSACAHLGAFILGCWVHEYAVGNGLD-LNVVLGTSLINMYTRCGNVSKAREVFD--SMKE 275
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+N+V+WT +ISG+ +G G +AVE F M++ GL PN + EG +
Sbjct: 276 RNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRV 335
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
F+ M EE ++P+++H+ CL+D+L RAG L++A
Sbjct: 336 FESMREEYRLVPEVEHHVCLVDMLGRAGLLDEA 368
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 142/306 (46%), Gaps = 36/306 (11%)
Query: 6 QLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTAL 65
+++Q + H HSP Y+ L++ L L Q+HA G+ ++ T L
Sbjct: 2 EIKQHHKHPHSP--------AYNLLLQAGPRL---KLLHQVHAHVIVSGYGCSRFLLTKL 50
Query: 66 GDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRR 125
++ + G + + ++F +P + + + T L++ T +S +L + R
Sbjct: 51 LNLACAAGSISYTRQIFLIVPNPD----SFLFTSLIRSTSKFHNFSVY-----SLYFYTR 101
Query: 126 MAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC 185
M PS T +V+ + +R+ ++IHG+ GF + D++V L+ Y KC
Sbjct: 102 MVLSN-VAPSNYTFTSVIKSCADLVALRHGRIIHGHVLVNGFGS-DVYVQTALMSFYGKC 159
Query: 186 GCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG 245
G + +A K+F D DR ++V+W ++ISG+ +G KEA+ F+RM+++G++PN + +
Sbjct: 160 GVLCNARKVF-DKMRDR-SVVTWNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATFVS 217
Query: 246 E-EGLKFFDKMVEECEVLPDIKHYG---------CLIDILERAGRLEQAEEVASGIPSQI 295
+ C V G LI++ R G + +A EV + +
Sbjct: 218 VLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKER- 276
Query: 296 TNVVVW 301
NVV W
Sbjct: 277 -NVVAW 281
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/270 (24%), Positives = 107/270 (39%), Gaps = 48/270 (17%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S T+ ++ C L LG +H G +V + T+L +MY G + + ++F
Sbjct: 211 NSATFVSVLSACAHLGAFILGCWVHEYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVF 270
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + ERN+V WT +I GY ++A+ LF M P+ IT +AV
Sbjct: 271 DSMKERNVVA----------WTAMISGYGTNGYGSQAVELFHEMRR-NGLLPNSITFVAV 319
Query: 143 LPAIWKNGEVRNCQLI--HGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
L A G V + + E R + HV CL+D + G + A ++
Sbjct: 320 LSACAHAGLVNEGRRVFESMREEYRLVPEVEHHV--CLVDMLGRAGLLDEAYNFIKEIHE 377
Query: 201 DRKNLVSWTTIISGFAMH---GMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVE 257
+ + WT ++ MH G+G + E ++ +P
Sbjct: 378 EPAPAI-WTAMLGACKMHKNFGLGAQVAE-----HRLASEPG------------------ 413
Query: 258 ECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ HY L +I AGR++Q E V
Sbjct: 414 ------NPAHYVILSNIYALAGRMDQVEMV 437
>gi|296086445|emb|CBI32034.3| unnamed protein product [Vitis vinifera]
Length = 593
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 151/293 (51%), Gaps = 39/293 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ F+++ C L + G Q+HA K+GF S VY+N +L Y + L + +F
Sbjct: 127 DKHTFPFVLKACAYLFALSEGEQIHAQILKLGFDSDVYINNSLVHFYATCDRLDFAKGVF 186
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + ER+LV+WNV +ID + R + AL LF M ++ EP TI ++
Sbjct: 187 DRMSERSLVSWNV----------VIDAFVRFGEFDAALNLFGEMQ--KFFEPDGYTIQSI 234
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
A G G D+ ++ L+D Y KCG + A +LF + +
Sbjct: 235 ANACA------------GMGSLSLGIVNDVLLNTSLVDMYCKCGSLELALQLFH--RMPK 280
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNRSWRIG-----------EEGLK 250
+++ SW ++I GF+ HG A+E F M + L PN +G EG +
Sbjct: 281 RDVTSWNSMILGFSTHGEVAAALEYFGCMVRTEKLMPNAITFVGVLSACNHGGLVSEGRR 340
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+FD MV E ++ P+++HYGCL+D+L RAG +++A +V S +P + ++V+WR+
Sbjct: 341 YFDVMVTEYKIKPELEHYGCLVDLLARAGLIDEALDVVSNMPMR-PDLVIWRS 392
>gi|449448934|ref|XP_004142220.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37320-like [Cucumis sativus]
gi|449502632|ref|XP_004161699.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g37320-like [Cucumis sativus]
Length = 524
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 157/294 (53%), Gaps = 32/294 (10%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
F++ S ++ C + G Q H+V + GF ++VYV ++L +Y G L ++ ++
Sbjct: 128 FNANDISSVLSLCNSQRNLRGGIQYHSVAIRTGFIANVYVGSSLVSLYGKCGELSNAYRV 187
Query: 82 FDELPERNLVTWNVIITGL-VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
FDE+P RN+V+W II G V+W ++N E +RMA +P+E T +
Sbjct: 188 FDEMPVRNVVSWTAIIAGFAVEW--------QVNMCLELFQEMKRMA----LQPNEFTFV 235
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+L A +G + + +H K GF+++ +HV+N LI Y KCG + A +FE V
Sbjct: 236 TILTACTGSGALGVGRSLHCQTVKMGFHSY-LHVANALISMYCKCGALNFALYIFEAMEV 294
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG------------LKPNRSWRIGEEG 248
K+ VSW ++I+G+A HG+ A++ F+ M+K L R EEG
Sbjct: 295 --KDTVSWNSMIAGYAQHGLSLRAIDLFKAMRKQKQVEADAITFLGVLSSCRHAGFVEEG 352
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQIT-NVVVW 301
+F+ MV E + P++ HY C+ID+L RAG L++A+ +P IT N +VW
Sbjct: 353 RHYFNLMV-ELGLKPELDHYSCVIDLLGRAGLLKEAQNFIEKMP--ITPNSIVW 403
>gi|326506208|dbj|BAJ86422.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 582
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 148/314 (47%), Gaps = 37/314 (11%)
Query: 23 DSFTYSFLIRTCV-TLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D Y+ + C +YP QLH +K G SH V L Y G L D+ K+
Sbjct: 74 DPIAYALALARCARERAYP-AAAQLHGHAAKRGAASHRRVRNGLIHAYSVCGMLFDARKV 132
Query: 82 FDELPERNLVTWNVIITGL---------------------VKWTGIIDGYSRMNRSNEAL 120
FD PE +++ WN ++ G V W +I EA+
Sbjct: 133 FDHGPEVDMIAWNCLLRGYAQGRDTGALREFFAQMPARDSVSWNTVIAWCVANGEHEEAV 192
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
A+FR M A +P +T+++V+ AI G + H Y ++ D +S+ LI+
Sbjct: 193 AVFREMLASNECQPDRVTLVSVISAIAYLGALAQGLWAHAYVCRKEIE-VDEKLSSALIN 251
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
Y+KCG I A +FE++ R ++ +W +++GF G + A+E F RM+ G PN+
Sbjct: 252 MYSKCGFIEGAVYVFENSCALR-SVDTWNAMLAGFTASGCSERALELFTRMESSGFVPNK 310
Query: 241 --------SWRIG---EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
+ G EEG+ +F++M + PDI HYGC++D+ RAG E+AEE+
Sbjct: 311 ITFNTLLNACSHGGFVEEGIGYFERMTNSSSIEPDIAHYGCMVDLFCRAGLFEKAEEMIQ 370
Query: 290 GIPSQITNVVVWRT 303
+P + + VW+
Sbjct: 371 MMPME-PDAAVWKA 383
>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
Length = 611
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 146/293 (49%), Gaps = 28/293 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSH--VYVNTALGDMYVSLGFLKDSSK 80
D F++S I C L G ++H + + G + H V V TAL +MY G L+++ K
Sbjct: 133 DKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARK 192
Query: 81 LFDELP-ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
+FD + + + V WN +I Y++ R +AL L+R M P + T
Sbjct: 193 VFDSIRHDADSVCWNAMIAA----------YAQHGRGKQALDLYRSMHDTTDLAPKQGTF 242
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+ V+ + ++ + IH F+A ++ VSN L+ Y KCGC+ A +F S
Sbjct: 243 VTVIDVCAELSALKQGRAIHARVRATNFDA-NLLVSNALVHMYGKCGCLDEALDVFH--S 299
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
+ K+ +SW TIIS +A HG +A+ ++ M G+KP +G +G
Sbjct: 300 MKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADG 359
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
L +F +M ++ + P + H+GC+ID+L R GRL +AE V +P Q N V W
Sbjct: 360 LDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQ-ANAVQW 411
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 17/196 (8%)
Query: 41 NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGL 100
+ G ++H G +V V TA+ MY G L D+ F+EL +N VTWN ++T
Sbjct: 48 DQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMT-- 105
Query: 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYT---EPSEITILAVLPAIWKNGEVRNCQL 157
Y R EAL LFR M CE + P + + + A ++ +
Sbjct: 106 --------NYKLDGRDREALELFREM--CERSRSARPDKFSFSIAIEACSNLEDLEQGRE 155
Query: 158 IHGYGEKRGFNAF-DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFA 216
IH + G D+ V L++ Y+KCG + A K+F+ D + V W +I+ +A
Sbjct: 156 IHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARKVFDSIRHD-ADSVCWNAMIAAYA 214
Query: 217 MHGMGKEAVENFERMQ 232
HG GK+A++ + M
Sbjct: 215 QHGRGKQALDLYRSMH 230
>gi|449506393|ref|XP_004162737.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Cucumis sativus]
Length = 614
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 159/294 (54%), Gaps = 28/294 (9%)
Query: 21 LFDSFTYSFLIRTCVTLSYP-NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
L D +T + + ++L+Y +LG QLH+V ++GF+ Y + L +Y +G L+ +
Sbjct: 261 LPDCYTLPIVFKA-LSLAYAFDLGLQLHSVAIRLGFEFDQYSESGLISLYSKIGDLECAC 319
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
K+F++ R L +WN II GL S+ R+ EA+ +F ++ EP + TI
Sbjct: 320 KVFEQNHNRKLGSWNAIIAGL----------SQGGRAKEAVNMFIKLRQSG-LEPDDFTI 368
Query: 140 LAVLPAIWKNGEVRNCQLIHGYG-EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
++V A G + +H + + + +I + N LID Y KCG + A K+F +
Sbjct: 369 VSVTSACGSLGNLELSLQMHKFVFQVKVTGKSNILMLNSLIDMYGKCGRMDLAMKVF--S 426
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EE 247
++ +N+ SWT++I G+AMHG K+A+ENF+ M++ G+ PN+ +G E
Sbjct: 427 NMGHRNVSSWTSLIVGYAMHGQVKQALENFQFMREAGVPPNQVTFVGVLSACVHGGMINE 486
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
G +FD M P + HYGC++D+L +AG LE+A + +P + N ++W
Sbjct: 487 GKHYFDMMKNVYGFKPQLPHYGCMVDLLSKAGLLEEARRMIEEMPMK-ANSIIW 539
>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 615
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/292 (31%), Positives = 149/292 (51%), Gaps = 28/292 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSH--VYVNTALGDMYVSLGFLKDSSK 80
D T ++ C L LG ++ A F H V++ AL DMY+ G + +
Sbjct: 235 DRMTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQ 294
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
LF +P +NLV+WN +I+GL G+ EAL +FRRM +P +T++
Sbjct: 295 LFHLMPVKNLVSWNSMISGLAH-QGLF---------KEALHMFRRMQTMGL-KPDSVTLV 343
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
VL + G++ + +H Y +K A D +V+N L+D YAKCG I A +F+ ++
Sbjct: 344 GVLNSCANLGDLELGKWVHSYIDKNHMKA-DGYVANALVDMYAKCGSIDQAFMVFQ--AM 400
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
K++ S+T +I GFAMHG A+ F M ++G++P+ +G EEG
Sbjct: 401 KCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSACSHAGLLEEGR 460
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ F M + P +HYGC++D+L RAG + +AE + +P + + VW
Sbjct: 461 RHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAFTNKMPI-VPDASVW 511
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 143/295 (48%), Gaps = 35/295 (11%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
F +Y+Q+ I + SP D++T +L++ C Q+HA K G S+++
Sbjct: 123 FSLYRQMLLIGL---SP-----DTYTLPYLLKACSQSHAFIEALQIHAHSIKTGLSSNLF 174
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
V L Y GF++ K+FD+ P W+ L+ WT +I YS+M +EA+
Sbjct: 175 VKNTLMRFYAVSGFIEAVEKVFDQGPH-----WD-----LISWTTLIQAYSKMGYPSEAI 224
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF-DIHVSNCLI 179
A F RM +T++ VL A + G+ + I Y + F+ D+ + N L+
Sbjct: 225 AAFFRMNC----TADRMTLVVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNALL 280
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP- 238
D Y KCG A +LF V KNLVSW ++ISG A G+ KEA+ F RMQ +GLKP
Sbjct: 281 DMYLKCGQPHLARQLFHLMPV--KNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPD 338
Query: 239 --------NRSWRIGEEGL-KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
N +G+ L K+ +++ + D L+D+ + G ++QA
Sbjct: 339 SVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGSIDQA 393
>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
Length = 813
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 147/282 (52%), Gaps = 26/282 (9%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
+R C +L + +G QLHA+ +K G + + +L MY G + + LFDE+ ++
Sbjct: 347 LRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDT 406
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
V+++ +++ GY + R+ EA +F++M AC EP T+++++PA
Sbjct: 407 VSYSALVS----------GYVQNGRAEEAFLVFKKMQACN-VEPDAATMVSLIPACSHLA 455
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
+++ + HG RG A + + N LID YAKCG I + ++F + +++VSW T
Sbjct: 456 ALQHGRCSHGSVIIRGL-ASETSICNALIDMYAKCGRIDLSRQVF--NMMPSRDIVSWNT 512
Query: 211 IISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGE-----------EGLKFFDKMVEEC 259
+I+G+ +HG+GKEA F M +G P+ I EG +F M
Sbjct: 513 MIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGY 572
Query: 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ P ++HY C++D+L R G L++A E +P + +V VW
Sbjct: 573 GLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLR-ADVRVW 613
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 137/297 (46%), Gaps = 53/297 (17%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
+++ IR C+ +PN SK V + TAL DMY G L + ++FD +
Sbjct: 250 VHAYCIRACL---HPNRN-------SKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAM 299
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
P RN VTW + +I G+ +R +A LF+ M A S +I + L A
Sbjct: 300 PARNEVTW----------SALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRA 349
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
+R + +H K G +A D+ N L+ YAK G I A LF++ +V K+
Sbjct: 350 CASLDHLRMGEQLHALLAKSGVHA-DLTAGNSLLSMYAKAGLIDQAIALFDEMAV--KDT 406
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDI 265
VS++ ++SG+ +G +EA F++MQ ++P+ + + ++ C L +
Sbjct: 407 VSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMV---------SLIPACSHLAAL 457
Query: 266 KHYGC-------------------LIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+H C LID+ + GR++ + +V + +PS+ ++V W T
Sbjct: 458 QHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR--DIVSWNT 512
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 129/287 (44%), Gaps = 41/287 (14%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+++T+ F ++ C L+ + G +H G Q+ ++V+TAL DMYV L D++ +F
Sbjct: 124 NNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIF 183
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALA-LFRRMAACEYTEPSEITILA 141
+P R+LV WN ++ GY+ + A+A L P+ T++A
Sbjct: 184 ATMPARDLVAWNAMLA----------GYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVA 233
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFN---------AFDIHVSNCLIDTYAKCGCIFSAS 192
+LP + + G + +H Y + + + + L+D YAKCG + A
Sbjct: 234 LLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYAR 293
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG---LKPNR--------- 240
++F+ ++ +N V+W+ +I GF + +A F+ M G L P
Sbjct: 294 RVFD--AMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACA 351
Query: 241 ---SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
R+GE+ ++ + V D+ L+ + +AG ++QA
Sbjct: 352 SLDHLRMGEQ----LHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 394
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 108/255 (42%), Gaps = 36/255 (14%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
+++ G L + LFD++P ++ T+N +I S + + L L+RRM
Sbjct: 67 HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSS--------SSPTAAADGLHLYRRMLR 118
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
P+ T L A + + IH + G A D+ VS L+D Y KC C+
Sbjct: 119 -HRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQA-DLFVSTALLDMYVKCACL 176
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENF--ERMQKVGLKPNRSWRIG- 245
A+ +F ++ ++LV+W +++G+A HGM AV + +MQ L+PN S +
Sbjct: 177 PDAAHIF--ATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVAL 234
Query: 246 ----------EEGLKFFDKMVEEC--------EVLPDIKHYG-CLIDILERAGRLEQAEE 286
+G + C L D G L+D+ + G L A
Sbjct: 235 LPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARR 294
Query: 287 VASGIPSQITNVVVW 301
V +P++ N V W
Sbjct: 295 VFDAMPAR--NEVTW 307
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 115/292 (39%), Gaps = 56/292 (19%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
FLV+K++Q + D+ T LI C L+ G H G S
Sbjct: 426 FLVFKKMQACNVEP--------DAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETS 477
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
+ AL DMY G + S ++F+ +P R++V+WN +I GY EA
Sbjct: 478 ICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIA----------GYGIHGLGKEAT 527
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQ-----LIHGYGEKRGFNAFDIHVS 175
ALF M + P +T + +L A +G V + + HGYG +
Sbjct: 528 ALFLEMNNLGF-PPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYI---- 582
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
C++D ++ G + A + + + R ++ W ++ ++ +N + +KV
Sbjct: 583 -CMVDLLSRGGFLDEAYEFIQSMPL-RADVRVWVALLGACRVY-------KNIDLGKKVS 633
Query: 236 LKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+G EG F VL L +I AGR ++A EV
Sbjct: 634 ---RMIQELGPEGTGNF--------VL--------LSNIYSAAGRFDEAAEV 666
>gi|15227389|ref|NP_179312.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|4584344|gb|AAD25139.1| putative selenium-binding protein [Arabidopsis thaliana]
gi|330251504|gb|AEC06598.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 156/315 (49%), Gaps = 36/315 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T L+R C P +H V + G++S+ ++L D Y S + D+ +
Sbjct: 327 DEVTVVSLLRVCKFFEQPLPCKSIHGVIIRRGYESNEVALSSLIDAYTSCSLVDDAGTVL 386
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + +++V+ + +I+GL + RS+EA+++F M P+ IT++++
Sbjct: 387 DSMTYKDVVSCSTMISGL----------AHAGRSDEAISIFCHM----RDTPNAITVISL 432
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + ++R + HG +R DI V ++D YAKCG I A + F+ +
Sbjct: 433 LNACSVSADLRTSKWAHGIAIRRSLAINDISVGTSIVDAYAKCGAIEMARRTFD--QITE 490
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN++SWT IIS +A++G+ +A+ F+ M++ G PN + ++GL
Sbjct: 491 KNIISWTVIISAYAINGLPDKALALFDEMKQKGYTPNAVTYLAALSACNHGGLVKKGLMI 550
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQI-TNVVVW-------RT 303
F MVEE + P ++HY C++D+L RAG ++ A E+ +P + W R
Sbjct: 551 FKSMVEE-DHKPSLQHYSCIVDMLSRAGEIDTAVELIKNLPEDVKAGASAWGAILSGCRN 609
Query: 304 GFLRLLINSYFFSPI 318
F +L+I S + +
Sbjct: 610 RFKKLIITSEVVAEV 624
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 15/206 (7%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T +I C +L + G ++H + GF V ++ MY L + KLFDE+
Sbjct: 129 TLVLVIHACRSLWFD--GEKIHGYVIRSGFCGISSVQNSILCMYADSDSLS-ARKLFDEM 185
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
ER++++W+V+I V+ + G L LF+ M TEP +T+ +VL A
Sbjct: 186 SERDVISWSVVIRSYVQSKEPVVG----------LKLFKEMVHEAKTEPDCVTVTSVLKA 235
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
++ + +HG+ +RGF+ D+ V N LID Y+K + SA ++F++T+ +N+
Sbjct: 236 CTVMEDIDVGRSVHGFSIRRGFDLADVFVCNSLIDMYSKGFDVDSAFRVFDETTC--RNI 293
Query: 206 VSWTTIISGFAMHGMGKEAVENFERM 231
VSW +I++GF + EA+E F M
Sbjct: 294 VSWNSILAGFVHNQRYDEALEMFHLM 319
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 97/219 (44%), Gaps = 47/219 (21%)
Query: 49 VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIID 108
VF S ++ ++ D Y+ G L + FD + R+ V+WNVI+ GL+ +
Sbjct: 51 VFKACAKLSWLFQGNSIADFYMKCGDLCSGLREFDCMNSRDSVSWNVIVFGLLDY----- 105
Query: 109 GYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA---IWKNGEVRNCQLIHGYGEKR 165
G+ E L F ++ + EP+ T++ V+ A +W +GE IHGY +
Sbjct: 106 GFEE-----EGLWWFSKLRVWGF-EPNTSTLVLVIHACRSLWFDGE-----KIHGYVIRS 154
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225
GF V N ++ YA + SA KLF++ S ++++SW+ +I + KE V
Sbjct: 155 GFCGIS-SVQNSILCMYADSDSL-SARKLFDEMS--ERDVISWSVVIRSYV---QSKEPV 207
Query: 226 ENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPD 264
GLK F +MV E + PD
Sbjct: 208 ---------------------VGLKLFKEMVHEAKTEPD 225
>gi|449435366|ref|XP_004135466.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 91/295 (30%), Positives = 157/295 (53%), Gaps = 29/295 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ FL++ C + + G Q HA K+G VYV +L +Y S G L + K+F
Sbjct: 125 DKHTFPFLLKACAYVFALSEGRQAHAQIFKLGLDLDVYVGNSLIHLYASCGCLSMALKVF 184
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+++P R+LV+WNV +ID Y + AL LF M EP T+ ++
Sbjct: 185 EKMPLRSLVSWNV----------MIDAYVQSGLFENALKLFVEMQ--NSFEPDGYTMQSI 232
Query: 143 LPAIWKNGEVRNCQLIHGYGEKR--GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+ A G + H Y ++ G A D+ +++ L+D Y+KCG + A ++FE ++
Sbjct: 233 VSACAGIGALSLGMWAHAYVLRKASGAMAGDVLINSSLVDMYSKCGSLRMAQQVFE--TM 290
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNRSWRIG-----------EEG 248
+ +L SW ++I AMHG G+ A++ F R+ ++ PN +G +G
Sbjct: 291 PKHDLNSWNSMILALAMHGRGQAALQCFSRLVEMEKFLPNSVTFVGVLSACNHGGMVADG 350
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
K+FD MV + ++ P ++HYGCL+D+L R+G +++A E+ + + + + V+WR+
Sbjct: 351 RKYFDMMVNDYKIEPRLEHYGCLVDLLSRSGFIDEALELVANMHIK-PDAVIWRS 404
>gi|23617093|dbj|BAC20776.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
Length = 681
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 151/295 (51%), Gaps = 38/295 (12%)
Query: 42 LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE-RNLVTWNVIITGL 100
LG+ +HA+ K G ++V AL Y G + ++FDELP R+++TWN ++ G
Sbjct: 164 LGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGY 223
Query: 101 VK---------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
V+ W+ ++ GY + AL +FR M + P++ +
Sbjct: 224 VRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVE-QGVRPNQAAV 282
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+ L A + G + + + +H ++ G ++V L+D YAKCGC+ A ++F+
Sbjct: 283 VTALSAAARLGLLEHGKFVHNVVQRSGMPVC-MNVGAALVDMYAKCGCVAVAREVFD--G 339
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
+ R+++ +W +I G A HG+G++AVE FER GL P +G EG
Sbjct: 340 MRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEG 399
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++F +VE+ + P+++HYGC++D+L RAG + +A E+ G+ + V+W T
Sbjct: 400 RRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGM-HIAPDPVLWGT 453
>gi|356498879|ref|XP_003518275.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Glycine max]
Length = 754
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 148/274 (54%), Gaps = 16/274 (5%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT + + C + LGTQ+ ++ K G++S++ V +L +Y+ GF+ ++ + F
Sbjct: 265 NEFTLTSALSQCCEIPSLELGTQVCSLCIKFGYESNLRVRNSLLYLYLKSGFIVEAHRFF 324
Query: 83 DELPERNLVTWNVIITGLVKWTGII-DGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
+ + + ++VTWN +I G + + D S R +EAL +F ++ +P T+ +
Sbjct: 325 NRMDDVSMVTWNAMIAGHAQMMELTKDNLSACQRGSEALKIFSKLNQ-SGMKPDLFTLSS 383
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL + + + IH K GF + D+ VS LI Y KCG I ASK F + S
Sbjct: 384 VLSVCSRMLAIEQGEQIHAQTIKTGFLS-DVIVSTSLISMYNKCGSIERASKAFLEMST- 441
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
+ +++WT++I+GF+ HGM ++A+ FE M G++PN +G + L
Sbjct: 442 -RTMIAWTSMITGFSQHGMSQQALHIFEDMSLAGVRPNTVTFVGVLSACSHAGMVSQALN 500
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
+F+ M ++ ++ P + HY C++D+ R GRLEQA
Sbjct: 501 YFEIMQKKYKIKPVMDHYECMVDMFVRLGRLEQA 534
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 96/199 (48%), Gaps = 17/199 (8%)
Query: 43 GTQL-HAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV 101
GTQ+ H K G + +V + L ++Y G ++D+ ++F+ +P RN+V W ++ G V
Sbjct: 82 GTQIVHGHVMKTGCHDNFFVMSFLVNVYAKCGNMEDARRVFENMPRRNVVAWTTLMVGFV 141
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMA-ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHG 160
+ + + A+ +F+ M A Y PS T+ AVL A ++ H
Sbjct: 142 QNS----------QPKHAIHVFQEMLYAGSY--PSIYTLSAVLHACSSLQSLKLGDQFHA 189
Query: 161 YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGM 220
Y K + FD V + L Y+KCG + A K F + + KN++SWT+ +S +G
Sbjct: 190 YIIKYHLD-FDTSVGSALCSLYSKCGRLEDALKAF--SRIREKNVISWTSAVSACGDNGA 246
Query: 221 GKEAVENFERMQKVGLKPN 239
+ + F M +KPN
Sbjct: 247 PVKGLRLFVEMISEDIKPN 265
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 125/294 (42%), Gaps = 49/294 (16%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
+T S ++ C +L LG Q HA K V +AL +Y G L+D+ K F
Sbjct: 166 YTLSAVLHACSSLQSLKLGDQFHAYIIKYHLDFDTSVGSALCSLYSKCGRLEDALKAFSR 225
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL- 143
+ E+N+++W ++ + G L LF M + E +P+E T+ + L
Sbjct: 226 IREKNVISWTSAVSACGDNGAPVKG----------LRLFVEMIS-EDIKPNEFTLTSALS 274
Query: 144 -----PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
P++ +V C L +G + ++ V N L+ Y K G I A + F
Sbjct: 275 QCCEIPSLELGTQV--CSLCIKFGYES-----NLRVRNSLLYLYLKSGFIVEAHRFF--N 325
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEE 258
+D ++V+W +I+G A M + +N Q+ G E LK F K+ +
Sbjct: 326 RMDDVSMVTWNAMIAGHAQ--MMELTKDNLSACQR-----------GSEALKIFSKL-NQ 371
Query: 259 CEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINS 312
+ PD+ ++ + R +EQ E++ + +TGFL +I S
Sbjct: 372 SGMKPDLFTLSSVLSVCSRMLAIEQGEQI---------HAQTIKTGFLSDVIVS 416
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 96/219 (43%), Gaps = 20/219 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT S ++ C + G Q+HA K GF S V V+T+L MY G ++ +SK F
Sbjct: 377 DLFTLSSVLSVCSRMLAIEQGEQIHAQTIKTGFLSDVIVSTSLISMYNKCGSIERASKAF 436
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E+ R ++ WT +I G+S+ S +AL +F M+ P+ +T + V
Sbjct: 437 LEMSTRTMIA----------WTSMITGFSQHGMSQQALHIFEDMSLAG-VRPNTVTFVGV 485
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G V +K+ + C++D + + G + A + + +
Sbjct: 486 LSACSHAGMVSQALNYFEIMQKKYKIKPVMDHYECMVDMFVRLGRLEQALNFIKKMNYEP 545
Query: 203 KNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKP 238
+ W+ I+G HG +G A E Q + LKP
Sbjct: 546 SEFI-WSNFIAGCRSHGNLELGFYASE-----QLLSLKP 578
>gi|115470713|ref|NP_001058955.1| Os07g0163900 [Oryza sativa Japonica Group]
gi|113610491|dbj|BAF20869.1| Os07g0163900 [Oryza sativa Japonica Group]
Length = 664
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 151/295 (51%), Gaps = 38/295 (12%)
Query: 42 LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE-RNLVTWNVIITGL 100
LG+ +HA+ K G ++V AL Y G + ++FDELP R+++TWN ++ G
Sbjct: 164 LGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMRRVFDELPRVRDVLTWNEVLAGY 223
Query: 101 VK---------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
V+ W+ ++ GY + AL +FR M + P++ +
Sbjct: 224 VRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVE-QGVRPNQAAV 282
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+ L A + G + + + +H ++ G ++V L+D YAKCGC+ A ++F+
Sbjct: 283 VTALSAAARLGLLEHGKFVHNVVQRSGMPVC-MNVGAALVDMYAKCGCVAVAREVFD--G 339
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
+ R+++ +W +I G A HG+G++AVE FER GL P +G EG
Sbjct: 340 MRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTNVTFVGVLNGCSRSGLVAEG 399
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++F +VE+ + P+++HYGC++D+L RAG + +A E+ G+ + V+W T
Sbjct: 400 RRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIEGM-HIAPDPVLWGT 453
>gi|218546775|sp|Q9SII7.2|PP159_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17210
Length = 736
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 156/315 (49%), Gaps = 36/315 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T L+R C P +H V + G++S+ ++L D Y S + D+ +
Sbjct: 348 DEVTVVSLLRVCKFFEQPLPCKSIHGVIIRRGYESNEVALSSLIDAYTSCSLVDDAGTVL 407
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + +++V+ + +I+GL + RS+EA+++F M P+ IT++++
Sbjct: 408 DSMTYKDVVSCSTMISGL----------AHAGRSDEAISIFCHM----RDTPNAITVISL 453
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + ++R + HG +R DI V ++D YAKCG I A + F+ +
Sbjct: 454 LNACSVSADLRTSKWAHGIAIRRSLAINDISVGTSIVDAYAKCGAIEMARRTFD--QITE 511
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN++SWT IIS +A++G+ +A+ F+ M++ G PN + ++GL
Sbjct: 512 KNIISWTVIISAYAINGLPDKALALFDEMKQKGYTPNAVTYLAALSACNHGGLVKKGLMI 571
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQI-TNVVVW-------RT 303
F MVEE + P ++HY C++D+L RAG ++ A E+ +P + W R
Sbjct: 572 FKSMVEE-DHKPSLQHYSCIVDMLSRAGEIDTAVELIKNLPEDVKAGASAWGAILSGCRN 630
Query: 304 GFLRLLINSYFFSPI 318
F +L+I S + +
Sbjct: 631 RFKKLIITSEVVAEV 645
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 15/206 (7%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T +I C +L + G ++H + GF V ++ MY L + KLFDE+
Sbjct: 150 TLVLVIHACRSLWFD--GEKIHGYVIRSGFCGISSVQNSILCMYADSDSLS-ARKLFDEM 206
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
ER++++W+V+I V+ + G L LF+ M TEP +T+ +VL A
Sbjct: 207 SERDVISWSVVIRSYVQSKEPVVG----------LKLFKEMVHEAKTEPDCVTVTSVLKA 256
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
++ + +HG+ +RGF+ D+ V N LID Y+K + SA ++F++T+ +N+
Sbjct: 257 CTVMEDIDVGRSVHGFSIRRGFDLADVFVCNSLIDMYSKGFDVDSAFRVFDETTC--RNI 314
Query: 206 VSWTTIISGFAMHGMGKEAVENFERM 231
VSW +I++GF + EA+E F M
Sbjct: 315 VSWNSILAGFVHNQRYDEALEMFHLM 340
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 118/264 (44%), Gaps = 54/264 (20%)
Query: 4 YKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNT 63
Y ++Q+ + + P F + + + C LS+ G + A K GF+S V V
Sbjct: 34 YSEIQRAGVQFNDP-------FVFPIVFKACAKLSWLFQGRCIQASLLKRGFESFVSVGN 86
Query: 64 ALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALF 123
++ D Y+ G L + FD + R+ V+WNVI+ GL+ + G+ E L F
Sbjct: 87 SIADFYMKCGDLCSGLREFDCMNSRDSVSWNVIVFGLLDY-----GF-----EEEGLWWF 136
Query: 124 RRMAACEYTEPSEITILAVLPA---IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
++ + EP+ T++ V+ A +W +GE IHGY + GF V N ++
Sbjct: 137 SKLRVWGF-EPNTSTLVLVIHACRSLWFDGE-----KIHGYVIRSGFCGIS-SVQNSILC 189
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
YA + SA KLF++ S ++++SW+ +I + KE V
Sbjct: 190 MYADSDSL-SARKLFDEMS--ERDVISWSVVIRSYV---QSKEPV--------------- 228
Query: 241 SWRIGEEGLKFFDKMVEECEVLPD 264
GLK F +MV E + PD
Sbjct: 229 ------VGLKLFKEMVHEAKTEPD 246
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 16/140 (11%)
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
KW ++ GYS + R A ++ +P I V A K + + I
Sbjct: 26 KWREVVSGYSEIQR-----------AGVQFNDPFVFPI--VFKACAKLSWLFQGRCIQAS 72
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
KRGF +F + V N + D Y KCG + S + F+ ++ ++ VSW I+ G +G
Sbjct: 73 LLKRGFESF-VSVGNSIADFYMKCGDLCSGLREFD--CMNSRDSVSWNVIVFGLLDYGFE 129
Query: 222 KEAVENFERMQKVGLKPNRS 241
+E + F +++ G +PN S
Sbjct: 130 EEGLWWFSKLRVWGFEPNTS 149
>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
Length = 687
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 147/282 (52%), Gaps = 26/282 (9%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
+R C +L + +G QLHA+ +K G + + +L MY G + + LFDE+ ++
Sbjct: 232 LRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDT 291
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
V+++ +++ GY + R+ EA +F++M AC EP T+++++PA
Sbjct: 292 VSYSALVS----------GYVQNGRAEEAFLVFKKMQACN-VEPDAATMVSLIPACSHLA 340
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
+++ + HG RG A + + N LID YAKCG I + ++F + +++VSW T
Sbjct: 341 ALQHGRCSHGSVIIRGL-ASETSICNALIDMYAKCGRIDLSRQVF--NMMPSRDIVSWNT 397
Query: 211 IISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGE-----------EGLKFFDKMVEEC 259
+I+G+ +HG+GKEA F M +G P+ I EG +F M
Sbjct: 398 MIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGY 457
Query: 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ P ++HY C++D+L R G L++A E +P + +V VW
Sbjct: 458 GLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLR-ADVRVW 498
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 137/297 (46%), Gaps = 53/297 (17%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
+++ IR C+ +PN SK V + TAL DMY G L + ++FD +
Sbjct: 135 VHAYCIRACL---HPNRN-------SKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAM 184
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
P RN VTW + +I G+ +R +A LF+ M A S +I + L A
Sbjct: 185 PARNEVTW----------SALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRA 234
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
+R + +H K G +A D+ N L+ YAK G I A LF++ +V K+
Sbjct: 235 CASLDHLRMGEQLHALLAKSGVHA-DLTAGNSLLSMYAKAGLIDQAIALFDEMAV--KDT 291
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDI 265
VS++ ++SG+ +G +EA F++MQ ++P+ + + ++ C L +
Sbjct: 292 VSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMV---------SLIPACSHLAAL 342
Query: 266 KHYGC-------------------LIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+H C LID+ + GR++ + +V + +PS+ ++V W T
Sbjct: 343 QHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR--DIVSWNT 397
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 129/287 (44%), Gaps = 41/287 (14%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+++T+ F ++ C L+ + G +H G Q+ ++V+TAL DMYV L D++ +F
Sbjct: 9 NNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIF 68
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALA-LFRRMAACEYTEPSEITILA 141
+P R+LV WN ++ GY+ + A+A L P+ T++A
Sbjct: 69 ATMPARDLVAWNAMLA----------GYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVA 118
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFN---------AFDIHVSNCLIDTYAKCGCIFSAS 192
+LP + + G + +H Y + + + + L+D YAKCG + A
Sbjct: 119 LLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYAR 178
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG---LKPNR--------- 240
++F+ ++ +N V+W+ +I GF + +A F+ M G L P
Sbjct: 179 RVFD--AMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACA 236
Query: 241 ---SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
R+GE+ ++ + V D+ L+ + +AG ++QA
Sbjct: 237 SLDHLRMGEQ----LHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 279
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 115/292 (39%), Gaps = 56/292 (19%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
FLV+K++Q + D+ T LI C L+ G H G S
Sbjct: 311 FLVFKKMQACNVEP--------DAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETS 362
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
+ AL DMY G + S ++F+ +P R++V+WN +I GY EA
Sbjct: 363 ICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIA----------GYGIHGLGKEAT 412
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQ-----LIHGYGEKRGFNAFDIHVS 175
ALF M + P +T + +L A +G V + + HGYG +
Sbjct: 413 ALFLEMNNLGF-PPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYI---- 467
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
C++D ++ G + A + + + R ++ W ++ ++ +N + +KV
Sbjct: 468 -CMVDLLSRGGFLDEAYEFIQSMPL-RADVRVWVALLGACRVY-------KNIDLGKKVS 518
Query: 236 LKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+G EG F VL L +I AGR ++A EV
Sbjct: 519 ---RMIQELGPEGTGNF--------VL--------LSNIYSAAGRFDEAAEV 551
>gi|413943789|gb|AFW76438.1| hypothetical protein ZEAMMB73_890738 [Zea mays]
Length = 529
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 90/302 (29%), Positives = 149/302 (49%), Gaps = 37/302 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + C NLG ++H+ V F + V AL DMY G+L+++ K+F
Sbjct: 146 DRVTLVTAVTACSRAGDLNLGRRIHSYMDGV-FGFSLPVANALLDMYTKNGYLEEAVKMF 204
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
+++PERN+++W ++++G L+ WT +I+ + EAL
Sbjct: 205 EQMPERNIISWTILVSGYGIAGQLDKARVFFYQCTQKDLILWTSMINACVQHGSFEEALI 264
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LFR M + EP + T++ +L G + + IH Y E R D + LI+
Sbjct: 265 LFRDMQL-QRVEPDKFTVVTLLTCCANIGALDQGEWIHQYAESRNMK-IDAVLGTALIEM 322
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
Y+KCG + + ++F + K+ +WT II G A +G +A+E FE MQ+ KP+
Sbjct: 323 YSKCGHVDKSLQIF--GRMQGKDAAAWTAIICGLATNGQASKALELFEEMQRSKTKPDGI 380
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
IG +EG ++F M E + P I+HY CL+++L AG L +AE++ +
Sbjct: 381 TFIGVLSACCHGGLVDEGQRYFQAMKEVYHIEPRIEHYSCLVNLLGHAGLLYEAEKLITD 440
Query: 291 IP 292
+P
Sbjct: 441 MP 442
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 105/197 (53%), Gaps = 15/197 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DS+TY F++R T+ G ++HA K GF+ Y +L +MY LG + ++F
Sbjct: 45 DSYTYPFVLRAIGTMKLSVEGRKVHAAAVKTGFRWDAYTACSLMEMYTMLGRADSARRVF 104
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+P+R LV WN+++ Y R R A+AL +M + T P +T++
Sbjct: 105 DEMPQRFLVLWNMMMR----------CYIRCGRFTAAVALAVQMESGGAT-PDRVTLVTA 153
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A + G++ + IH Y + G F + V+N L+D Y K G + A K+FE +
Sbjct: 154 VTACSRAGDLNLGRRIHSYMD--GVFGFSLPVANALLDMYTKNGYLEEAVKMFE--QMPE 209
Query: 203 KNLVSWTTIISGFAMHG 219
+N++SWT ++SG+ + G
Sbjct: 210 RNIISWTILVSGYGIAG 226
>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/260 (32%), Positives = 142/260 (54%), Gaps = 26/260 (10%)
Query: 46 LHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTG 105
+ A F+++ V V LG + G + + +LFD +P+R+ V WN ++TG
Sbjct: 178 VRAAFAEIVSPDVVCVTAMLGALSAG-GDVDTARELFDGMPQRDHVAWNAMLTG------ 230
Query: 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
Y R+ RS EAL LF M SE+T+++VL A + G + +H Y R
Sbjct: 231 ----YVRVGRSREALGLFDEMQKAGVA-VSEVTLVSVLTACAQMGALERGMWVHSYVCSR 285
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225
G + + L+D Y+KCG + + ++FE ++ +N+ +WT+ +SG AM+GMG+E +
Sbjct: 286 GMR-VSVTLGTALVDMYSKCGVVTMSMEVFE--TMRERNIYTWTSALSGLAMNGMGEECL 342
Query: 226 ENFERMQKVGLKPN--------RSWRIG---EEGLKFFDKMVEECEVLPDIKHYGCLIDI 274
E F+RM+ G++PN R + EEG FD M ++ +V P ++HYGC++D+
Sbjct: 343 ELFKRMESAGMEPNGVTFVAVLRGCSVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMVDL 402
Query: 275 LERAGRLEQAEEVASGIPSQ 294
RAGRL+ A + + +P +
Sbjct: 403 YGRAGRLDDAVDFINSMPVE 422
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 90/213 (42%), Gaps = 21/213 (9%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T ++ C + G +H+ G + V + TAL DMY G + S ++F+ +
Sbjct: 258 TLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGVVTMSMEVFETM 317
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
ERN+ TW ++GL ++G E L LF+RM + EP+ +T +AVL
Sbjct: 318 RERNIYTWTSALSGLA-----MNGM-----GEECLELFKRMESAGM-EPNGVTFVAVLRG 366
Query: 146 IWKNG---EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
G E R C +K + H C++D Y + G + A V+
Sbjct: 367 CSVAGLVEEGRAC--FDSMKDKHKVEPWLEHY-GCMVDLYGRAGRLDDAVDFINSMPVEP 423
Query: 203 KNLVSWTTIISGFAMHG---MGKEAVENFERMQ 232
V W +++ +H +GK A+ ++
Sbjct: 424 HEGV-WGALLNASRIHNNVDLGKHAMHKLTEIE 455
>gi|224139652|ref|XP_002323212.1| predicted protein [Populus trichocarpa]
gi|222867842|gb|EEF04973.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 147/291 (50%), Gaps = 27/291 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FT+SF ++ C + ++H + G++ V V T L Y G ++ + +F
Sbjct: 109 DTFTFSFTLKACERIKALKKCEEVHGSIIRTGYERDVVVCTGLVRCYGRNGCVEIARMVF 168
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +PER+LV WN +I+ YS+ EAL ++ M E T++ +
Sbjct: 169 DNMPERDLVAWNAMISC----------YSQAGYHQEALRVYDYMRN-ENVGVDGFTLVGL 217
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + G + +H ++G ++ V N LID YAKCG + A ++F D
Sbjct: 218 LSSCSHVGALNMGVKLHRIASEKGL-LRNVFVGNALIDMYAKCGSLDGALEVFNGMPRD- 275
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+W ++I GF +HG G EA+ F +M + G++PN +G EEG++F
Sbjct: 276 --AFTWNSMIVGFGVHGFGDEAIYFFNQMLEAGVRPNSIAFLGLLCGCSHQGLVEEGVEF 333
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
F +M + V P IKHYGC++D+ RAG+LE+A E+ P Q + V+WR
Sbjct: 334 FHQMSSKFNVKPGIKHYGCIVDMYGRAGKLEKALEIIGDSPWQ-DDPVLWR 383
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 114/250 (45%), Gaps = 18/250 (7%)
Query: 56 QSHVYVNTALGDMYVSLGFLKDSS-KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMN 114
Q+HV VN +S L + + LP + +++ W II G+++
Sbjct: 29 QAHVIVNGLQNHPAISNSILNFCAVSISGSLPYAQHLFRHILNPQTQAWNSIIRGFAQSP 88
Query: 115 RSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHV 174
+A+ + RM + P T L A + ++ C+ +HG + G+ D+ V
Sbjct: 89 SPVQAIFYYNRMLFDSVSGPDTFTFSFTLKACERIKALKKCEEVHGSIIRTGYER-DVVV 147
Query: 175 SNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK- 233
L+ Y + GC+ A +F++ + ++LV+W +IS ++ G +EA+ ++ M+
Sbjct: 148 CTGLVRCYGRNGCVEIARMVFDN--MPERDLVAWNAMISCYSQAGYHQEALRVYDYMRNE 205
Query: 234 ---------VGLKPNRSWRIG--EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLE 282
VGL + S +G G+K ++ E +L ++ LID+ + G L+
Sbjct: 206 NVGVDGFTLVGLLSSCS-HVGALNMGVKLH-RIASEKGLLRNVFVGNALIDMYAKCGSLD 263
Query: 283 QAEEVASGIP 292
A EV +G+P
Sbjct: 264 GALEVFNGMP 273
>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g23330
gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 715
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 153/295 (51%), Gaps = 32/295 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DSFT S ++ G ++H + G S VY+ ++L DMY ++DS ++F
Sbjct: 241 DSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVF 300
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
L R+ ++WN ++ G Y + R NEAL LFR+M + +P + +V
Sbjct: 301 SRLYCRDGISWNSLVAG----------YVQNGRYNEALRLFRQMVTAK-VKPGAVAFSSV 349
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+PA + + +HGY + GF + +I +++ L+D Y+KCG I +A K+F DR
Sbjct: 350 IPACAHLATLHLGKQLHGYVLRGGFGS-NIFIASALVDMYSKCGNIKAARKIF-----DR 403
Query: 203 KNL---VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
N+ VSWT II G A+HG G EAV FE M++ G+KPN+ + +E
Sbjct: 404 MNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEA 463
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+F+ M + + +++HY + D+L RAG+LE+A S + + T VW T
Sbjct: 464 WGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTG-SVWST 517
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 111/242 (45%), Gaps = 30/242 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL---GFLKDSS 79
D + ++++C + G +H ++G +Y AL +MY L G
Sbjct: 104 DHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVG 163
Query: 80 KLFDELPERNLVTWNVIITG-----------------------LVKWTGIIDGYSRMNRS 116
+FDE+P+R + + + +V + II GY++
Sbjct: 164 NVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMY 223
Query: 117 NEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN 176
+AL + R M + +P T+ +VLP + +V + IHGY ++G ++ D+++ +
Sbjct: 224 EDALRMVREMGTTDL-KPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDS-DVYIGS 281
Query: 177 CLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
L+D YAK I + ++F + + ++ +SW ++++G+ +G EA+ F +M +
Sbjct: 282 SLVDMYAKSARIEDSERVF--SRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKV 339
Query: 237 KP 238
KP
Sbjct: 340 KP 341
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 100/215 (46%), Gaps = 21/215 (9%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
+ +S +I C L+ +LG QLH + GF S++++ +AL DMY G +K + K+FD
Sbjct: 343 AVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFD 402
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
+ NV+ V WT II G++ +EA++LF M + +P+++ +AVL
Sbjct: 403 RM--------NVLDE--VSWTAIIMGHALHGHGHEAVSLFEEMKR-QGVKPNQVAFVAVL 451
Query: 144 PAIWKNGEVRNC-QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
A G V + + G N H + + D + G + A V+
Sbjct: 452 TACSHVGLVDEAWGYFNSMTKVYGLNQELEHYA-AVADLLGRAGKLEEAYNFISKMCVEP 510
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
V W+T++S ++H +N E +KV K
Sbjct: 511 TGSV-WSTLLSSCSVH-------KNLELAEKVAEK 537
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 124/306 (40%), Gaps = 61/306 (19%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
LI+ + + QLHA F + SH + + +Y +L L ++ LF L
Sbjct: 11 LIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVI-SIYTNLKLLHEALLLFKTLKSPP 69
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
++ W +I ++ + ++ALA F M A P +VL +
Sbjct: 70 VLAWK----------SVIRCFTDQSLFSKALASFVEMRASGRC-PDHNVFPSVLKSCTMM 118
Query: 150 GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK---CGCIFSASKLF----------- 195
++R + +HG+ + G + D++ N L++ YAK G S +F
Sbjct: 119 MDLRFGESVHGFIVRLGMDC-DLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSG 177
Query: 196 -EDTSVD-------------------RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
ED + RK++VS+ TII+G+A GM ++A+ M
Sbjct: 178 DEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTD 237
Query: 236 LKPNRSWRIGEEGLKFFDKMVEECE------------VLPDIKHYGCLIDILERAGRLEQ 283
LKP+ S+ + L F + V+ + + D+ L+D+ ++ R+E
Sbjct: 238 LKPD-SFTLSSV-LPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIED 295
Query: 284 AEEVAS 289
+E V S
Sbjct: 296 SERVFS 301
>gi|449435190|ref|XP_004135378.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g77170-like [Cucumis sativus]
Length = 609
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 159/294 (54%), Gaps = 28/294 (9%)
Query: 21 LFDSFTYSFLIRTCVTLSYP-NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
L D +T + + ++L+Y +LG QLH+V ++GF+ Y + L +Y +G L+ +
Sbjct: 256 LPDCYTLPIVFKA-LSLAYAFDLGLQLHSVAIRLGFEFDQYSESGLISLYSKIGDLECAC 314
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
K+F++ R L +WN II GL S+ R+ EA+ +F ++ EP + TI
Sbjct: 315 KVFEQNHNRKLGSWNAIIAGL----------SQGGRAKEAVNMFIKLRQSG-LEPDDFTI 363
Query: 140 LAVLPAIWKNGEVRNCQLIHGYG-EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
++V A G + +H + + + +I + N LID Y KCG + A K+F +
Sbjct: 364 VSVTSACGSLGNLELSLQMHKFVFQVKVTGKSNILMLNSLIDMYGKCGRMDLAMKVF--S 421
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EE 247
++ +N+ SWT++I G+AMHG K+A+ENF+ M++ G+ PN+ +G E
Sbjct: 422 NMGHRNVSSWTSLIVGYAMHGQVKQALENFQFMREAGVPPNQVTFVGVLSACVHGGMINE 481
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
G +FD M P + HYGC++D+L +AG LE+A + +P + N ++W
Sbjct: 482 GKHYFDMMKNVYGFKPQLPHYGCMVDLLSKAGLLEEARRMIEEMPMK-ANSIIW 534
>gi|357164322|ref|XP_003580018.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g38010-like [Brachypodium distachyon]
Length = 593
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 145/278 (52%), Gaps = 25/278 (8%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T + ++ C L G +H + + + V A+ DMYV L + ++FD L
Sbjct: 213 TLACVLVACGRLGAARAGKAVHGWYLRRESDLKLIVGNAVLDMYVKCEKLDLARRVFDRL 272
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
R++++W ++I+GLV+ ++AL +F M +P ++ + VL A
Sbjct: 273 LVRDVISWTIMISGLVQ----------CKLPSKALEVFNEMQKSR-VKPDKVVLSTVLSA 321
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
G + + + +H Y E++G +D+HV L+D YAKCGC+ ++ +F + KNL
Sbjct: 322 CTSLGALESGRWVHEYIERKGIE-WDVHVGTSLVDMYAKCGCLETSLSIFRKMPL--KNL 378
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKFFDK 254
SW +I+GFA+HG G+EA+E+F+RM GL PN + +EGL+ F+
Sbjct: 379 SSWNALINGFALHGHGREALEHFDRMVASGLAPNEVSFIIVLGACCHSGLVQEGLQLFES 438
Query: 255 MVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
M ++ P +HYG ++D+L RAG + +A V +P
Sbjct: 439 MKNSYKLSPWEEHYGSVVDLLGRAGLIHEAYSVTKAMP 476
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 141/312 (45%), Gaps = 42/312 (13%)
Query: 19 PPLFDSFTYSFLIRTCVTLSYPNL------GTQLHAVFSKVGFQSHVYVNTALGDMYVSL 72
P D +T ++ C L G Q+HAV K GF + V AL +Y
Sbjct: 102 PRRPDGYTLPATLKACARLGAGGDDGGLREGRQVHAVAEKGGFLGRLPVRNALVTLYGVC 161
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT 132
G D+ ++FDE+ R++V+ WT ++ + R R EAL L +M
Sbjct: 162 GECGDARRVFDEMASRDVVS----------WTALVSAFVRGGRFAEALVLVGQMDVV--- 208
Query: 133 EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSAS 192
P+E T+ VL A + G R + +HG+ +R + + V N ++D Y KC + A
Sbjct: 209 -PNEGTLACVLVACGRLGAARAGKAVHGWYLRRESD-LKLIVGNAVLDMYVKCEKLDLAR 266
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------S 241
++F+ V ++++SWT +ISG + +A+E F MQK +KP++ S
Sbjct: 267 RVFDRLLV--RDVISWTIMISGLVQCKLPSKALEVFNEMQKSRVKPDKVVLSTVLSACTS 324
Query: 242 WRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
E G ++ + +E + D+ L+D+ + G LE + + +P + N+ W
Sbjct: 325 LGALESG-RWVHEYIERKGIEWDVHVGTSLVDMYAKCGCLETSLSIFRKMP--LKNLSSW 381
Query: 302 RTGFLRLLINSY 313
LIN +
Sbjct: 382 NA-----LINGF 388
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 89/197 (45%), Gaps = 14/197 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D S ++ C +L G +H + G + V+V T+L DMY G L+ S +F
Sbjct: 311 DKVVLSTVLSACTSLGALESGRWVHEYIERKGIEWDVHVGTSLVDMYAKCGCLETSLSIF 370
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++P +NL +WN +I G + G+ R EAL F RM A P+E++ + V
Sbjct: 371 RKMPLKNLSSWNALINGFA-----LHGHGR-----EALEHFDRMVASGLA-PNEVSFIIV 419
Query: 143 LPAIWKNGEVR-NCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A +G V+ QL + ++ H + ++D + G I A + + +
Sbjct: 420 LGACCHSGLVQEGLQLFESMKNSYKLSPWEEHYGS-VVDLLGRAGLIHEAYSVTKAMPM- 477
Query: 202 RKNLVSWTTIISGFAMH 218
R + +W ++S H
Sbjct: 478 RPAVFTWGALLSACQAH 494
>gi|357477567|ref|XP_003609069.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355510124|gb|AES91266.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 611
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 101/355 (28%), Positives = 164/355 (46%), Gaps = 72/355 (20%)
Query: 2 LVYKQLQQIYIHSHSPL------------PPLF-DSFTYSFLIRTCVTLSYPNL-GTQLH 47
+Y L + HS +PL P L DSF+++F ++ G QLH
Sbjct: 77 FMYNTLIRSLSHSSTPLSSLQPFIQLLRHPTLLPDSFSFAFTLKGIANDGCSKRQGIQLH 136
Query: 48 AVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK----- 102
+ + GF H++V T L MY G + + K+FDE+ + N+V WN ++T +
Sbjct: 137 SHAFRHGFDDHIFVGTTLISMYAECGCYEYARKVFDEMSQPNVVAWNAVVTACFRCGMWR 196
Query: 103 -----------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
W+ +I G+++ ++A F+ + + PSE+++
Sbjct: 197 VLGVSFGWREVVFCEMKMRDDASWSTMIVGFAKSGSFHDAFGFFKELLR-DRNRPSEVSL 255
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
VL A + G +++HG+ EK GF + V+N LIDTY+KCG +
Sbjct: 256 TGVLSACAQAGAFEFGKILHGFMEKAGFLCI-VSVNNALIDTYSKCG------------N 302
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
VD LV ++ AMHG EA+ F M++ G++P+ I E+G
Sbjct: 303 VDMAKLVFNISL----AMHGRADEAIRVFHEMEESGVRPDGVTFISLLYACSHSGLVEQG 358
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F KM + P I+HYGC++D+ RA RL++A E +P + NV++WRT
Sbjct: 359 CALFSKMRNFYGIEPAIEHYGCMVDLYGRAARLQKAYEFIRQMPI-LPNVIIWRT 412
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 78/193 (40%), Gaps = 32/193 (16%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
++ C G LH K GF V VN AL D Y G + D +KL
Sbjct: 258 VLSACAQAGAFEFGKILHGFMEKAGFLCIVSVNNALIDTYSKCGNV-DMAKL-------- 308
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
+N+ + + R++EA+ +F M P +T +++L A +
Sbjct: 309 --VFNISL-------------AMHGRADEAIRVFHEMEE-SGVRPDGVTFISLLYACSHS 352
Query: 150 GEV-RNCQLIHGYGEKRGFNAFDIHVSN--CLIDTYAKCGCIFSASKLFEDTSVDRKNLV 206
G V + C L + + R F + + + C++D Y + + A + + N++
Sbjct: 353 GLVEQGCAL---FSKMRNFYGIEPAIEHYGCMVDLYGRAARLQKAYEFIRQMPI-LPNVI 408
Query: 207 SWTTIISGFAMHG 219
W T++ ++HG
Sbjct: 409 IWRTLLGACSIHG 421
>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
Length = 695
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 156/292 (53%), Gaps = 28/292 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ C + LG Q+H+ GF S++ + AL D+Y+ G ++ + LF
Sbjct: 219 DESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLF 278
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ L +++++WN +I GY+ MN EAL LF+ M + P+++T+L++
Sbjct: 279 EGLSYKDVISWNT----------LIGGYTHMNLYKEALLLFQEMLRSGES-PNDVTMLSI 327
Query: 143 LPAIWKNGEVRNCQLIHGYGEKR--GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
LPA G + + IH Y KR G H ++ LID YAKCG I +A ++F+ S+
Sbjct: 328 LPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTS-LIDMYAKCGDIEAAQQVFD--SI 384
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
++L SW +I GFAMHG A + F RM+K ++P+ +G + G
Sbjct: 385 LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGR 444
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F M E+ ++ P ++HYGC+ID+L +G ++AEE+ + + + + V+W
Sbjct: 445 HIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEME-PDGVIW 495
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 149/306 (48%), Gaps = 41/306 (13%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L + +T+ FL+++C G Q+H K+G+ +YV+T+L MYV G L+D+ K
Sbjct: 85 LPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARK 144
Query: 81 LFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEA 119
+FD+ R++V++ +ITG +V W +I GY+ + EA
Sbjct: 145 VFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEA 204
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
L LF+ M P E T+++V+ A ++ + + +H + + GF + ++ + N LI
Sbjct: 205 LELFKEMMKTN-VRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGS-NLKIVNALI 262
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D Y KCG + +A LFE S K+++SW T+I G+ + KEA+ F+ M + G PN
Sbjct: 263 DLYIKCGEVETACGLFEGLSY--KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPN 320
Query: 240 R--------------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAE 285
+ IG + +K ++ V H LID+ + G +E A+
Sbjct: 321 DVTMLSILPACAHLGAIEIGRWIHVYINKRLK--GVANASSHRTSLIDMYAKCGDIEAAQ 378
Query: 286 EVASGI 291
+V I
Sbjct: 379 QVFDSI 384
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 135/330 (40%), Gaps = 65/330 (19%)
Query: 46 LHAVFSKVGFQSHVYVNTALGDMYV---SLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
+HA K G + Y + L + V L + +F+ + E NL+ WN +
Sbjct: 6 IHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFR---- 61
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
G++ + AL L+ M + P+ T +L + K+ R Q IHG+
Sbjct: 62 ------GHALSSDPVSALYLYVCMISLGLL-PNCYTFPFLLKSCAKSKAFREGQQIHGHV 114
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS----------------------- 199
K G++ D++V LI Y + G + A K+F+ +S
Sbjct: 115 LKLGYD-LDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASA 173
Query: 200 ------VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-------- 245
+ K++VSW +ISG+A G KEA+E F+ M K ++P+ S +
Sbjct: 174 QKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQS 233
Query: 246 ---EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
E G + +++ ++K LID+ + G +E A + G+ + +V+ W
Sbjct: 234 ASIELGRQVH-SWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYK--DVISWN 290
Query: 303 TGFLRLLINSYFFSPITLNSQRLFFFPAAL 332
T LI Y + + L + L F L
Sbjct: 291 T-----LIGGY--THMNLYKEALLLFQEML 313
>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
Length = 736
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 142/262 (54%), Gaps = 25/262 (9%)
Query: 42 LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV 101
LG + + G S++ + L DMYV G L+++S LF+++ ++N+V+WNV+I
Sbjct: 279 LGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMI---- 334
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
GY+ M+ EAL LFRRM +P+++T L++LPA G + + +H Y
Sbjct: 335 ------GGYTHMSCYKEALGLFRRMMQSN-IDPNDVTFLSILPACANLGALDLGKWVHAY 387
Query: 162 GEKRGFNAFD-IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGM 220
+K + + + + LID YAKCG + A ++F+ ++ K+L +W +ISGFAMHG
Sbjct: 388 VDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFD--CMNTKSLATWNAMISGFAMHGH 445
Query: 221 GKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYG 269
A+ F RM G P+ +G G ++F M+++ +V P + HYG
Sbjct: 446 TDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYG 505
Query: 270 CLIDILERAGRLEQAEEVASGI 291
C+ID+ RAG ++AE + +
Sbjct: 506 CMIDLFGRAGLFDEAETLVKNM 527
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 123/239 (51%), Gaps = 26/239 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ +T+ + ++C + + G Q+HA K+G + + +V+T+L +MY G L ++ +F
Sbjct: 127 NEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVF 186
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
D+ R+ V++ +ITG +V W +I GY++ R EA+A
Sbjct: 187 DKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMA 246
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNG-EVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
F M + T P+ T+L+VL A ++G ++ + + E RG + +I + N LID
Sbjct: 247 FFEEMRRAKVT-PNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGS-NIRLVNGLID 304
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
Y KCG + AS LFE + KN+VSW +I G+ KEA+ F RM + + PN
Sbjct: 305 MYVKCGDLEEASNLFE--KIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPN 361
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 84/331 (25%), Positives = 134/331 (40%), Gaps = 65/331 (19%)
Query: 17 PLPP--LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQ-SHVYVNTALGDMYVS-L 72
P PP L L+ C TL Q+H+ K G +H ++ + VS
Sbjct: 19 PSPPYKLVHDHPSLTLLSNCKTLQTLK---QIHSQIIKTGLHNTHFALSKLIEFCAVSPH 75
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT 132
G L + LF + N V WN +I GL S AL + M + T
Sbjct: 76 GDLSYALSLFKTIRNPNHVIWNHMIRGL----------SSSESPFLALEYYVHMIS-SGT 124
Query: 133 EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF--NAFDIHVSNCLIDTYAKCGCIFS 190
EP+E T ++ + K + +H + K G NAF +H S LI+ YA+ G + +
Sbjct: 125 EPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAF-VHTS--LINMYAQNGELVN 181
Query: 191 ASKLFEDTS-----------------------------VDRKNLVSWTTIISGFAMHGMG 221
A +F+ +S + +++VSW +ISG+A G
Sbjct: 182 ARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRV 241
Query: 222 KEAVENFERMQKVGLKPNRSWRI------GEEGL-----KFFDKMVEECEVLPDIKHYGC 270
+EA+ FE M++ + PN S + + G + +E+ + +I+
Sbjct: 242 EEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNG 301
Query: 271 LIDILERAGRLEQAEEVASGIPSQITNVVVW 301
LID+ + G LE+A + I Q NVV W
Sbjct: 302 LIDMYVKCGDLEEASNLFEKI--QDKNVVSW 330
>gi|224090799|ref|XP_002309086.1| predicted protein [Populus trichocarpa]
gi|222855062|gb|EEE92609.1| predicted protein [Populus trichocarpa]
Length = 555
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 98/301 (32%), Positives = 150/301 (49%), Gaps = 32/301 (10%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L FT S ++ + G +H K+GF S V V AL DMY + D+ +
Sbjct: 158 LMSKFTVSGVLSVFAGRGDFDNGRLVHGFMIKMGFDSCVSVCNALIDMYGKCRCVVDALE 217
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F+ + E+++ +WN I++ + + L LF RM + + +TI
Sbjct: 218 IFETMNEKDIFSWNSILSA----------NELCSDHDGTLRLFDRMLG-DGVQLDLVTIT 266
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGF-------NAFDIHVSNCLIDTYAKCGCIFSASK 193
+LPA + + + IHGY GF N +++ N L+D YAKCG + A
Sbjct: 267 TILPACSHLAALVHGREIHGYMIVNGFVKDGESENMYNLQTINALMDMYAKCGSMRDAGM 326
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-------- 245
+F + S ++ SW +I G+ MHG G EA+ F M K GLKPN +G
Sbjct: 327 VFYNMS--NRDTASWNIMIMGYGMHGYGNEALYMFSDMCKSGLKPNEITFVGVLLACSHA 384
Query: 246 ---EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
+G+KF +M + V+P I+HY C+ID+L RAG+LE+A ++A +P Q TN VVWR
Sbjct: 385 GFISQGIKFLGEMELKHGVVPTIQHYTCVIDMLGRAGQLEEAYKLAVTMPIQ-TNPVVWR 443
Query: 303 T 303
Sbjct: 444 A 444
Score = 107 bits (268), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 117/217 (53%), Gaps = 14/217 (6%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D +T+ LI+ + ++H + K+G +YV ++L Y+ +K++ +
Sbjct: 57 LPDKYTFPCLIKGLCEVMEVFQVKKIHGLVRKLGLDLDMYVGSSLVSSYLKSELMKEARE 116
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
LFDE+P+R++V WN +++GY+++ R +EAL + R M+ E S+ T+
Sbjct: 117 LFDEIPDRDVVLWN----------SMVNGYAQIGRFDEALGVCREMSQ-EGVLMSKFTVS 165
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
VL G+ N +L+HG+ K GF++ + V N LID Y KC C+ A ++FE ++
Sbjct: 166 GVLSVFAGRGDFDNGRLVHGFMIKMGFDSC-VSVCNALIDMYGKCRCVVDALEIFE--TM 222
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
+ K++ SW +I+S + + F+RM G++
Sbjct: 223 NEKDIFSWNSILSANELCSDHDGTLRLFDRMLGDGVQ 259
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 36/59 (61%)
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
YAKC + A + T+ +N+ ++ +ISGF ++G+ ++ + +E M++ G+ P++
Sbjct: 2 YAKCNQMNQALLVLNRTADYARNVFAYNALISGFVLNGLPQDGLGAYEEMRQAGVLPDK 60
>gi|125533803|gb|EAY80351.1| hypothetical protein OsI_35522 [Oryza sativa Indica Group]
Length = 470
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 147/289 (50%), Gaps = 34/289 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D ++ ++R C L LG +H ++G +V V AL DMY GFL D+ ++F
Sbjct: 102 DGYSVPAVVRACSELPDAVLGGVIHGFAVRLGLMGNVVVAAALLDMYAKAGFLDDAVRVF 161
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ ER+ V WN ++ GY+R R+ E +F R + + + L
Sbjct: 162 DEMTERDAVVWNCMVA----------GYARAGRAVETFEIFSR---AQVEAVNMVNGLQA 208
Query: 143 LPAIW----KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+P++ K GE+ + IHG + DI V N LI+ YAKCG + + +F +
Sbjct: 209 VPSVLNICAKEGELMKGREIHGRMVRCLAFDSDIAVGNALINMYAKCGRVNVSQAVF--S 266
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW-------------RIG 245
+ ++++VSW+T+I +++HG G++A++ + M G+KPN W +
Sbjct: 267 GMQQRDVVSWSTMIHSYSIHGKGEQALKVYMEMLSEGVKPN--WITFTSVLSSCSHSGLV 324
Query: 246 EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
EG K F+ M + V P +HY C++D+L RAG +E+A + +P +
Sbjct: 325 TEGRKIFESMTKVHGVHPAAEHYACMVDLLGRAGAIEEAVGLIRKMPME 373
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 74/304 (24%), Positives = 130/304 (42%), Gaps = 48/304 (15%)
Query: 28 SFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE 87
S L+R C G Q HA G+ + T L MY G + + ++FD +
Sbjct: 10 SGLLRRCAVAGAVRPGEQAHARAVVGGWLPDATLETDLVLMYCRCGERRRARRVFDGMRA 69
Query: 88 RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC-----EYTEPSEITILAV 142
++ +NV++ + +A+ +F R+ A Y+ P+ + +
Sbjct: 70 PSMHAYNVLLAA--------------SPPRDAMEVFSRLLASGLRPDGYSVPAVVRACSE 115
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LP G +IHG+ + G ++ V+ L+D YAK G + A ++F++ +
Sbjct: 116 LPDAVLGG------VIHGFAVRLGLMG-NVVVAAALLDMYAKAGFLDDAVRVFDEMT--E 166
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFER-----------MQKVGLKPNRSWRIGE--EGL 249
++ V W +++G+A G E E F R +Q V N + GE +G
Sbjct: 167 RDAVVWNCMVAGYARAGRAVETFEIFSRAQVEAVNMVNGLQAVPSVLNICAKEGELMKGR 226
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLL 309
+ +MV DI LI++ + GR+ ++ V SG+ Q +VV W T +
Sbjct: 227 EIHGRMVRCLAFDSDIAVGNALINMYAKCGRVNVSQAVFSGM--QQRDVVSWST-----M 279
Query: 310 INSY 313
I+SY
Sbjct: 280 IHSY 283
>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
wallichii]
Length = 710
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 156/292 (53%), Gaps = 28/292 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ C + LG Q+H+ GF S++ + AL D+Y+ G ++ + LF
Sbjct: 234 DESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLF 293
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ L +++++WN +I GY+ MN EAL LF+ M + P+++T+L++
Sbjct: 294 EGLSYKDVISWNT----------LIGGYTHMNLYKEALLLFQEMLRSGES-PNDVTMLSI 342
Query: 143 LPAIWKNGEVRNCQLIHGYGEKR--GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
LPA G + + IH Y KR G H ++ LID YAKCG I +A ++F+ S+
Sbjct: 343 LPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTS-LIDMYAKCGDIEAAQQVFD--SI 399
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
++L SW +I GFAMHG A + F RM+K ++P+ +G + G
Sbjct: 400 LNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGR 459
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F M E+ ++ P ++HYGC+ID+L +G ++AEE+ + + + + V+W
Sbjct: 460 HIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTMEME-PDGVIW 510
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 87/306 (28%), Positives = 149/306 (48%), Gaps = 41/306 (13%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L + +T+ FL+++C G Q+H K+G+ +YV+T+L MYV G L+D+ K
Sbjct: 100 LPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARK 159
Query: 81 LFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEA 119
+FD+ R++V++ +ITG +V W +I GY+ + EA
Sbjct: 160 VFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEA 219
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
L LF+ M P E T+++V+ A ++ + + +H + + GF + ++ + N LI
Sbjct: 220 LELFKEMMKTN-VRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGS-NLKIVNALI 277
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D Y KCG + +A LFE S K+++SW T+I G+ + KEA+ F+ M + G PN
Sbjct: 278 DLYIKCGEVETACGLFEGLSY--KDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPN 335
Query: 240 R--------------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAE 285
+ IG + +K ++ V H LID+ + G +E A+
Sbjct: 336 DVTMLSILPACAHLGAIEIGRWIHVYINKRLK--GVANASSHRTSLIDMYAKCGDIEAAQ 393
Query: 286 EVASGI 291
+V I
Sbjct: 394 QVFDSI 399
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 141/346 (40%), Gaps = 68/346 (19%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV---SLGFLKDSSKLFDELP 86
L+ C TL + +HA K G + Y + L + V L + +F+ +
Sbjct: 8 LLHNCKTLQSLRM---IHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQ 64
Query: 87 ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI 146
E NL+ WN + G++ + AL L+ M + P+ T +L +
Sbjct: 65 EPNLLIWNTMFR----------GHALSSDPVSALYLYVCMISLGLL-PNCYTFPFLLKSC 113
Query: 147 WKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS------- 199
K+ R Q IHG+ K G++ D++V LI Y + G + A K+F+ +S
Sbjct: 114 AKSKAFREGQQIHGHVLKLGYD-LDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSY 172
Query: 200 ----------------------VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
+ K++VSW +ISG+A G KEA+E F+ M K ++
Sbjct: 173 TALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVR 232
Query: 238 PNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
P+ S + E G + +++ ++K LID+ + G +E A
Sbjct: 233 PDESTMVSVVSACAQSASIELGRQVH-SWIDDHGFGSNLKIVNALIDLYIKCGEVETACG 291
Query: 287 VASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAAL 332
+ G+ + +V+ W T LI Y + + L + L F L
Sbjct: 292 LFEGLSYK--DVISWNT-----LIGGY--THMNLYKEALLLFQEML 328
>gi|357490167|ref|XP_003615371.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355516706|gb|AES98329.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 765
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 150/274 (54%), Gaps = 16/274 (5%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ +T + + C + LG Q+HA+ +K+G++S++ V +L +Y+ G + ++ +LF
Sbjct: 278 NEYTLTSALSQCCEVKCLELGIQVHALCTKLGYESNLRVRNSLLYLYLKCGCIVEAQRLF 337
Query: 83 DELPERNLVTWNVIITGLVKWTGII-DGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
+ + NLVTWN +I G + + D S + EAL LF ++ +P T +
Sbjct: 338 KGMNDVNLVTWNAMIAGHAQMMELSKDNLSAYQKGIEALNLFSKLNR-SGMKPDPFTFSS 396
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL K + + IH K GF + D+ V + +I+ Y KCG I ASK+F + S+
Sbjct: 397 VLSVCSKMMALEQGEQIHARTIKTGFLS-DVVVGSSMINMYNKCGSIERASKVFLEMSI- 454
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
+ ++ WTT+I+GFA HG K+A+ FE M+ VG++PN +G E
Sbjct: 455 -RTMILWTTMITGFAQHGWSKQALNLFEDMKLVGIRPNLVTFVGVLSACGSAGMVNEAFN 513
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
+F+ M +E ++ P + HY CL+D+L R G++++A
Sbjct: 514 YFEIMQKEYKIKPVMDHYVCLVDMLVRLGQVQEA 547
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 96/230 (41%), Gaps = 42/230 (18%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+S ++ C + G Q+HA K GF S V V +++ +MY G ++ +SK+F
Sbjct: 390 DPFTFSSVLSVCSKMMALEQGEQIHARTIKTGFLSDVVVGSSMINMYNKCGSIERASKVF 449
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E+ R ++ W +ITG + G+S+ +AL LF M P+ +T + V
Sbjct: 450 LEMSIRTMILWTTMITGFAQ-----HGWSK-----QALNLFEDMKLVG-IRPNLVTFVGV 498
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN-----------CLIDTYAKCGCIFSA 191
L A G V FN F+I CL+D + G + A
Sbjct: 499 LSACGSAGMVN-----------EAFNYFEIMQKEYKIKPVMDHYVCLVDMLVRLGQVQEA 547
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKP 238
L + + W+ +I G G +G +A E + LKP
Sbjct: 548 FDLIKKMDYKASEFI-WSNLIVGCLSQGNLELGCDAAEKL-----LSLKP 591
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 90/220 (40%), Gaps = 14/220 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DS Y L++ C+ + +H K G ++++ L +Y G ++ + ++F
Sbjct: 72 DSSFYPPLLQQCLENCSFSSTQIIHCHIVKTGSHEDPFLSSFLVTVYAKCGRMECAQQVF 131
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + RN V WT ++ GY + + A+ LF M PS T+
Sbjct: 132 DHMNRRNAVA----------WTNLMKGYVQNSMPKHAIHLFEEMLLHSECYPSNYTLAIA 181
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A ++ + +H Y K + FD + N L Y KCG L +
Sbjct: 182 LNACTSLHSLKLGEQLHAYIIKYHVD-FDTSIGNALCSLYTKCGGKLEVG-LTAFRRIKE 239
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERM--QKVGLKPNR 240
K+++SWT IS G + V F M +V ++PN
Sbjct: 240 KDVISWTAAISACGEKGEAMKGVRVFVEMLLDEVQVQPNE 279
>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Vitis vinifera]
Length = 896
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 149/315 (47%), Gaps = 45/315 (14%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L ++ T + ++ CV + +H K+GF+ YV AL DMY +G + S
Sbjct: 397 LPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISET 456
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT-------- 132
+FD + R+ V+WN +ITG Y R + AL L M E T
Sbjct: 457 IFDSMEVRDRVSWNTMITG----------YVLSGRYSNALVLLHEMQRMENTKDVKKDDN 506
Query: 133 --------EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK 184
+P+ IT++ VLP + + IH Y R A DI V + L+D YAK
Sbjct: 507 DDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYA-IRNMLASDITVGSALVDMYAK 565
Query: 185 CGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM-QKVG----LKPN 239
CGC+ + ++F + + KN+++W +I MHG G+EA+E F+ M + G KPN
Sbjct: 566 CGCLNLSRRVFNE--MPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPN 623
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
I EGL F +M + V P HY C++D+L RAG+LE+A E+
Sbjct: 624 EVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELV 683
Query: 289 SGIPSQITNVVVWRT 303
+ +P++ V W +
Sbjct: 684 NTMPAEFDKVGAWSS 698
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 108/222 (48%), Gaps = 18/222 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPN---LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
SFT + C L + LG QLH +VG Q + N AL MY LG + DS
Sbjct: 192 LSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQK-TFTNNALMAMYAKLGRVDDS 250
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
LF+ +R++V+WN +I+ +S+ +R +EALA FR M E E +T
Sbjct: 251 KALFESFVDRDMVSWNTMIS----------SFSQSDRFSEALAFFRLM-VLEGVELDGVT 299
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
I +VLPA + + IH Y + + V + L+D Y C + S ++F+
Sbjct: 300 IASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHI 359
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPN 239
R L W +ISG+A +G+ ++A+ F M KV GL PN
Sbjct: 360 LGRRIEL--WNAMISGYARNGLDEKALILFIEMIKVAGLLPN 399
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 105/214 (49%), Gaps = 14/214 (6%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHA-VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
D T + ++ C L ++G ++HA V + +V +AL DMY + ++ +
Sbjct: 295 LDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRR 354
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD + R + WN +I+G Y+R +AL LF M P+ T+
Sbjct: 355 VFDHILGRRIELWNAMISG----------YARNGLDEKALILFIEMIKVAGLLPNTTTMA 404
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+V+PA N + IHGY K GF D +V N L+D Y++ G + + +F+ S+
Sbjct: 405 SVMPACVHCEAFSNKESIHGYAVKLGFKE-DRYVQNALMDMYSRMGKMDISETIFD--SM 461
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
+ ++ VSW T+I+G+ + G A+ MQ++
Sbjct: 462 EVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRM 495
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 69/223 (30%), Positives = 106/223 (47%), Gaps = 27/223 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKL 81
D+F + +++ L G Q+HA K G+ S V V L +MY G + D K+
Sbjct: 91 DNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKV 150
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + +R+ V+WN I L R + +AL FR M E E S T+++
Sbjct: 151 FDRITDRDQVSWNSFIAALC----------RFEKWEQALEAFRAMQM-ENMELSSFTLVS 199
Query: 142 VLPAIWKNGEVRNCQL---IHGY----GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
V A G + +L +HGY G+++ F +N L+ YAK G + + L
Sbjct: 200 VALACSNLGVMHGLRLGKQLHGYSLRVGDQKTF------TNNALMAMYAKLGRVDDSKAL 253
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
FE + VDR ++VSW T+IS F+ EA+ F M G++
Sbjct: 254 FE-SFVDR-DMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVE 294
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/231 (24%), Positives = 102/231 (44%), Gaps = 26/231 (11%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76
P P ++ T ++ C L+ G ++HA + S + V +AL DMY G L
Sbjct: 513 PYKP--NAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLN 570
Query: 77 DSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA----CEYT 132
S ++F+E+P +N++TWNV+I + EAL LF+ M A
Sbjct: 571 LSRRVFNEMPNKNVITWNVLIMAC----------GMHGKGEEALELFKNMVAEAGRGGEA 620
Query: 133 EPSEITILAVLPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191
+P+E+T + V A +G + L + G H + C++D + G + A
Sbjct: 621 KPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYA-CVVDLLGRAGQLEEA 679
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKPN 239
+L + + +W++++ +H +G+ A +N + L+PN
Sbjct: 680 YELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNL-----LHLEPN 725
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 3/130 (2%)
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
W + +R N EA++ + M P AVL A+ +++ + IH
Sbjct: 60 WVDALRSRTRSNDFREAISTYIEMTV-SGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAA 118
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
K G+ + + V+N L++ Y KCG I K+F D DR + VSW + I+ +
Sbjct: 119 VKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVF-DRITDR-DQVSWNSFIAALCRFEKWE 176
Query: 223 EAVENFERMQ 232
+A+E F MQ
Sbjct: 177 QALEAFRAMQ 186
>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
Length = 746
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 135/254 (53%), Gaps = 25/254 (9%)
Query: 59 VYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNE 118
+ A+ DMY + + + K+FD LP+R++V+WN +ITG Y + +NE
Sbjct: 305 IIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITG----------YMQNGLANE 354
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
A+ ++ M E +P + T ++VLPA G ++ +H K G N D++V+ CL
Sbjct: 355 AIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLN-LDVYVTTCL 413
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
ID YAKCG + A LFE + R++ W II+G +HG G +A+ F +MQ+ +KP
Sbjct: 414 IDLYAKCGKLVEAMFLFE--HMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKP 471
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ + ++G FFD M ++P KHY C++D+L RAG+L++A E
Sbjct: 472 DHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEF 531
Query: 288 ASGIPSQITNVVVW 301
+P + + VW
Sbjct: 532 IQSMPIK-PDSAVW 544
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/313 (25%), Positives = 148/313 (47%), Gaps = 28/313 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ T S ++ CV L L +H K G ++V AL D+Y LG L ++ +F
Sbjct: 167 DAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVF 226
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ R+LVTWN II+ + + A+ LF M P +T++++
Sbjct: 227 GGMALRDLVTWNSIIS----------ANEQGGKVAAAVELFHGMMESGVC-PDVLTLVSL 275
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
A+ + G+ + +H Y +RG++ DI N ++D YAK I +A K+F++ +
Sbjct: 276 ASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDN--LPD 333
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQK-VGLKPNRSWRIG-----------EEGLK 250
+++VSW T+I+G+ +G+ EA+ + M GLKP + + ++G++
Sbjct: 334 RDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMR 393
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLI 310
++ L D+ CLID+ + G+L +A + +P + T W L +
Sbjct: 394 MHALSIKTGLNL-DVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTG--PWNAIIAGLGV 450
Query: 311 NSYFFSPITLNSQ 323
+ + ++L SQ
Sbjct: 451 HGHGAKALSLFSQ 463
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/323 (27%), Positives = 154/323 (47%), Gaps = 40/323 (12%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFL 75
PL P DSFT+ L+R P QLHA ++G +V+ + +L Y+ G +
Sbjct: 64 PLRP--DSFTFPPLVRAA---PGPASAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRV 118
Query: 76 KDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS 135
++ ++FDE+PER++ WN +++GL + T R+ +A+ L RM E
Sbjct: 119 AEAYRVFDEMPERDVPAWNAMLSGLCRNT----------RAADAVTLLGRMVG-EGVAGD 167
Query: 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
+T+ +VLP G+ ++H Y K G + ++ V N LID Y K G + A +F
Sbjct: 168 AVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSG-ELFVCNALIDVYGKLGMLTEAHWVF 226
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN------RSWRIGEEGL 249
++ ++LV+W +IIS G AVE F M + G+ P+ + + + G
Sbjct: 227 GGMAL--RDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGD 284
Query: 250 KFFDKMVEECEV------LPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ K V C V + DI ++D+ + +++ A++V +P + +VV W T
Sbjct: 285 ELGAKSV-HCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDR--DVVSWNT 341
Query: 304 GFLRLLINSYFFSPITLNSQRLF 326
LI Y + + + R++
Sbjct: 342 -----LITGYMQNGLANEAIRIY 359
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 100/236 (42%), Gaps = 49/236 (20%)
Query: 12 IHSHSPLPPLFDSF-----TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALG 66
+H+H L P+ +F YS+L G ++HA+ K G VYV T L
Sbjct: 362 MHNHEGLKPIQGTFVSVLPAYSYL-------GGLQQGMRMHALSIKTGLNLDVYVTTCLI 414
Query: 67 DMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM 126
D+Y G L ++ LF+ +P R+ WN II GL G+ +AL+LF +M
Sbjct: 415 DLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGL----GV------HGHGAKALSLFSQM 464
Query: 127 AACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS----------- 175
E +P +T +++L A G V +G + FD+ +
Sbjct: 465 QQ-EEIKPDHVTFVSLLAACSHAGLV-----------DQGRSFFDLMQTVYGIVPIAKHY 512
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENF 228
C++D + G + A + + + + V W ++ +HG MGK A +N
Sbjct: 513 TCMVDMLGRAGQLDEAFEFIQSMPIKPDSAV-WGALLGACRIHGNVEMGKVASQNL 567
>gi|242096420|ref|XP_002438700.1| hypothetical protein SORBIDRAFT_10g024650 [Sorghum bicolor]
gi|241916923|gb|EER90067.1| hypothetical protein SORBIDRAFT_10g024650 [Sorghum bicolor]
Length = 431
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 96/307 (31%), Positives = 148/307 (48%), Gaps = 28/307 (9%)
Query: 8 QQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGD 67
+ + + SP+ P + TY+ L++ CV LG ++HA GF+ Y+ T L
Sbjct: 21 KAVSLLCRSPVCP--GAGTYALLLQECVNRRDVRLGKRIHARMVATGFRCSAYIATKLLI 78
Query: 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA 127
YV +G L + KLFD +P+R++V WN +I+G + G + R A+ LF M
Sbjct: 79 FYVKIGDLGCAQKLFDGMPQRSVVAWNAVISGCAR-GGSAEAQER------AVELFDAMR 131
Query: 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK--RGFNAFDIHVSNCLIDTYAKC 185
A E P + T +VL A + + + + +HG K G N F ++ L+D Y KC
Sbjct: 132 A-EGLAPDQFTFASVLCACARLAALGHGRRVHGVAVKCDVGGNVF---ANSALVDMYLKC 187
Query: 186 GCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG 245
C A ++F + +N+ WT +ISG G EA+ F+RM GL+PN +
Sbjct: 188 SCPGDAHRVF--AAAPERNVTMWTAVISGHGQQGRVAEALALFDRMAADGLRPNDVTFLA 245
Query: 246 -----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
+EGL+ F M E + P HY ++D+L R GRL A E+ +P
Sbjct: 246 VLSACAHGGLVDEGLRRFSSMSMEYGLTPRGPHYAAVVDMLARVGRLHDAYELVKNLPDC 305
Query: 295 ITNVVVW 301
+ VVW
Sbjct: 306 QEHSVVW 312
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 101/215 (46%), Gaps = 17/215 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT++ ++ C L+ G ++H V K +V+ N+AL DMY+ D+ ++F
Sbjct: 138 DQFTFASVLCACARLAALGHGRRVHGVAVKCDVGGNVFANSALVDMYLKCSCPGDAHRVF 197
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
PERN+ WT +I G+ + R EALALF RMAA + P+++T LAV
Sbjct: 198 AAAPERNVTM----------WTAVISGHGQQGRVAEALALFDRMAA-DGLRPNDVTFLAV 246
Query: 143 LPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G V + + G H + ++D A+ G + A +L ++
Sbjct: 247 LSACAHGGLVDEGLRRFSSMSMEYGLTPRGPHYAA-VVDMLARVGRLHDAYELVKNLPDC 305
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVE----NFERMQ 232
+++ V W I+ HG E VE F R+Q
Sbjct: 306 QEHSVVWGAILGACRKHGGDVELVELAARRFFRLQ 340
>gi|224127716|ref|XP_002320145.1| predicted protein [Populus trichocarpa]
gi|222860918|gb|EEE98460.1| predicted protein [Populus trichocarpa]
Length = 548
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 149/275 (54%), Gaps = 30/275 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+S ++ +C TL NLG Q+H + K+ F V V + L DMY + D+ K F
Sbjct: 195 DGFTFSSMLNSCGTLGSCNLGRQIHGLSIKLSFDLDVLVASGLVDMYAKSENIDDARKAF 254
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + RN+V+WN ++ G Y R+ EA+ L M E P EIT+ ++
Sbjct: 255 DGMAARNVVSWNTMVVG----------YGRLGDGGEAMKLLIGMFQ-EDLRPDEITLASI 303
Query: 143 LPAIWKNGEVRNCQL--IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+ + + + +C++ ++ Y K GF+AF + ++N LI+ Y+K G I A + F +V
Sbjct: 304 IRSC--SSALTSCEIMQVNAYVLKNGFHAF-LSIANALINAYSKGGSIAMALQCF--NTV 358
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGL 249
+LV+WT++I +A H + K +++ FE M G+ P++ + EGL
Sbjct: 359 LEPDLVTWTSLIGAYAFHSLPKNSIDTFEEMLADGVWPDQIVFLEVLSACSHAGLVNEGL 418
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
+F M ++ +LP ++HY CLID+L RAG L++A
Sbjct: 419 HYFSLM-KDYHILPGLEHYTCLIDLLGRAGLLDEA 452
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 113/219 (51%), Gaps = 14/219 (6%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD+ T + L+R C+ L+ +G +LH K+GF + +VN+AL D+Y G +K++ +
Sbjct: 93 FDAITLNGLLRACLELNDVEIGRELHCFIVKLGFAVNSFVNSALVDLYGKCGLVKEARRA 152
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FDE+ R+LV WNV+++ Y+ + EA F+ M E T +
Sbjct: 153 FDEVYCRDLVLWNVMLS----------CYAMNCLAEEASGFFKLMQE-ENFMTDGFTFSS 201
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+L + G + IHG K F+ D+ V++ L+D YAK I A K F+ +
Sbjct: 202 MLNSCGTLGSCNLGRQIHGLSIKLSFD-LDVLVASGLVDMYAKSENIDDARKAFDGMAA- 259
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+N+VSW T++ G+ G G EA++ M + L+P+
Sbjct: 260 -RNVVSWNTMVVGYGRLGDGGEAMKLLIGMFQEDLRPDE 297
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 130/288 (45%), Gaps = 41/288 (14%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G Q+H+ K+GF + + + + ++Y+ + +LFDE+ RN+VTWN +I GLV
Sbjct: 7 GKQVHSHVIKLGFCNVLSLQNQILNVYIKCKDFNYAHRLFDEMHVRNVVTWNTVICGLVD 66
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
G + FR+M + IT+ +L A + +V + +H +
Sbjct: 67 ----CRGSDYESSVYMGFCYFRKMLL-DKVGFDAITLNGLLRACLELNDVEIGRELHCFI 121
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
K GF A + V++ L+D Y KCG + A + F++ ++LV W ++S +AM+ + +
Sbjct: 122 VKLGF-AVNSFVNSALVDLYGKCGLVKEARRAFDEVYC--RDLVLWNVMLSCYAMNCLAE 178
Query: 223 EAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLP------------------- 263
EA F+ MQ+ +G F M+ C L
Sbjct: 179 EASGFFKLMQEENFMT--------DGFT-FSSMLNSCGTLGSCNLGRQIHGLSIKLSFDL 229
Query: 264 DIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT---GFLRL 308
D+ L+D+ ++ ++ A + G+ ++ NVV W T G+ RL
Sbjct: 230 DVLVASGLVDMYAKSENIDDARKAFDGMAAR--NVVSWNTMVVGYGRL 275
>gi|449492842|ref|XP_004159118.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05750, chloroplastic-like [Cucumis sativus]
Length = 525
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 153/317 (48%), Gaps = 47/317 (14%)
Query: 23 DSFTYSFLIRTCVTLSYPNL--GTQLHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSS 79
+ T+ L+ C + + LH K G + HV V TAL DMY L +
Sbjct: 91 NHITFITLLSACADFPSESFFFASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHAR 150
Query: 80 KLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNE 118
K+F L +N V+WN ++ G ++ WT +I+G + S +
Sbjct: 151 KVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQ 210
Query: 119 ALALFRRM----AACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHV 174
AL F +M A +Y ++I+AVL A G + +H + + F +I +
Sbjct: 211 ALECFHQMQRSGVAADY-----VSIIAVLAACADLGALTLGLWVHRFVMPQEFKD-NIKI 264
Query: 175 SNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
SN LID Y++CGCI A ++F + ++ LVSW +II GFA++G E++E F MQK
Sbjct: 265 SNSLIDMYSRCGCIEFARQVF--VKMAKRTLVSWNSIIVGFAVNGFADESLEFFXAMQKE 322
Query: 235 GLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQ 283
G KP+ G +GL+ FD M ++ P I+HYGC++D+ RAGRLE
Sbjct: 323 GFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLED 382
Query: 284 AEEVASGIPSQITNVVV 300
A + +P + VV+
Sbjct: 383 ALNMIEEMPMKPNEVVL 399
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 116/288 (40%), Gaps = 56/288 (19%)
Query: 97 ITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI--WKNGEVRN 154
+ +V WT + Y R + +EA A F RM EP+ IT + +L A + +
Sbjct: 54 VDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAG-VEPNHITFITLLSACADFPSESFFF 112
Query: 155 CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR------------ 202
+HGY K G + + V LID Y+KC + A K+F + V
Sbjct: 113 ASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFM 172
Query: 203 -----------------KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN------ 239
++ +SWT +I+G HG ++A+E F +MQ+ G+ +
Sbjct: 173 RNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIA 232
Query: 240 ---RSWRIGEEGLKFF-DKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQI 295
+G L + + V E +IK LID+ R G +E A +V + +
Sbjct: 233 VLAACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKR- 291
Query: 296 TNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAALYALTQILGFKP 343
+V W + + +N + + L FF A Q GFKP
Sbjct: 292 -TLVSWNSIIVGFAVNGF-------ADESLEFFXA-----MQKEGFKP 326
>gi|225444117|ref|XP_002266487.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 553
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 146/305 (47%), Gaps = 37/305 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D + + C + G ++H KVG + + ++ AL +Y G + + LF
Sbjct: 172 DHISMVIVFSACGKIGGTEFGKEVHGYVIKVGIRPALSLSNALLGVYTKCGEMDAAQSLF 231
Query: 83 DELPE-RNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEAL 120
E+ R++V+ ++ G LV W +I Y + +A+
Sbjct: 232 VEMAAMRDVVSHTILFNGYVDMGSIDLARGIFDQMSVKDLVSWNSMIHAYVKAKHPKKAI 291
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LFR+M E EP E T+++VL A +++N +L H + + D+ V LID
Sbjct: 292 ELFRKMEN-EMVEPDETTMVSVLAACASLADLQNGRLAHRFIIQNNPRQ-DLFVGTALID 349
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
YAKCG + A F +D +++ +WTT I G A HG G +A+ F M+K G+KPN+
Sbjct: 350 MYAKCGSLEEAMVTF--YKMDSRDVFTWTTAIEGLANHGHGDKALSLFTEMEKQGIKPNQ 407
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
+ + +EG F +MVE ++ P I+H GCL+DIL RAG L QAEE
Sbjct: 408 ATFVSVLMACSRSGLVKEGCLLFKRMVEAYQIQPKIEHLGCLLDILSRAGLLHQAEEFIK 467
Query: 290 GIPSQ 294
+P +
Sbjct: 468 LMPPK 472
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/332 (24%), Positives = 140/332 (42%), Gaps = 74/332 (22%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +TY +++ C + + G ++HA +K G S VYV AL +Y S G + D+ +LF
Sbjct: 73 DKYTYPAMLKACWRMGSLSKGKEVHAHVTKTGLDSDVYVGNALLHLYGSTGQVTDARRLF 132
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +P R+L +WN ++ Y+ + + E L LF+RM E I+++ V
Sbjct: 133 DGMPHRDLASWNT----------LLGAYN--DNAVEVLVLFKRMMY-EGIGGDHISMVIV 179
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
A K G + +HGY K G + +SN L+ Y KCG + +A LF + + R
Sbjct: 180 FSACGKIGGTEFGKEVHGYVIKVGIRP-ALSLSNALLGVYTKCGEMDAAQSLFVEMAAMR 238
Query: 203 ------------------------------KNLVSWTTIISGFAMHGMGKEAVENFERMQ 232
K+LVSW ++I + K+A+E F +M+
Sbjct: 239 DVVSHTILFNGYVDMGSIDLARGIFDQMSVKDLVSWNSMIHAYVKAKHPKKAIELFRKME 298
Query: 233 KVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKH-------------------YGCLID 273
++P+ + + ++ C L D+++ LID
Sbjct: 299 NEMVEPDETTMV---------SVLAACASLADLQNGRLAHRFIIQNNPRQDLFVGTALID 349
Query: 274 ILERAGRLEQAEEVASGIPSQITNVVVWRTGF 305
+ + G LE+A + S+ +V W T
Sbjct: 350 MYAKCGSLEEAMVTFYKMDSR--DVFTWTTAI 379
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 97/218 (44%), Gaps = 17/218 (7%)
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
K+FD++ + + T I W +I +SR A+ ++ + P + T
Sbjct: 20 KVFDQVLTQTITT--AFIHATPTWNCLIRAFSRSPTPITAILIYNHFIKGRFVFPDKYTY 77
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
A+L A W+ G + + +H + K G ++ D++V N L+ Y G + A +LF+
Sbjct: 78 PAMLKACWRMGSLSKGKEVHAHVTKTGLDS-DVYVGNALLHLYGSTGQVTDARRLFD--G 134
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI------GEEGLKFFD 253
+ ++L SW T++ + + + E + F+RM G+ + + G+ G F
Sbjct: 135 MPHRDLASWNTLLGAYNDNAV--EVLVLFKRMMYEGIGGDHISMVIVFSACGKIGGTEFG 192
Query: 254 KMVE----ECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
K V + + P + L+ + + G ++ A+ +
Sbjct: 193 KEVHGYVIKVGIRPALSLSNALLGVYTKCGEMDAAQSL 230
>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
Length = 665
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 157/342 (45%), Gaps = 68/342 (19%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTA-----------------L 65
+ FTY L + C G Q+HA K G V++ +A L
Sbjct: 129 NKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRML 188
Query: 66 G--------------DMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK--------- 102
G D Y+ G ++ + +LF + ++N+ +WNV+++G+ K
Sbjct: 189 GEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARE 248
Query: 103 ------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
W+ +IDGY + EAL +F M E P + + +VL A G
Sbjct: 249 LFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQR-EEIRPRKFVLSSVLAACANLG 307
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
+ + IH Y N+FD + L+D YAKCG + A +FE +++K + +W
Sbjct: 308 ALDQGRWIHAYVNNNS-NSFDAVLGTALVDMYAKCGRLDMAWDVFE--KMEKKEVFTWNA 364
Query: 211 IISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEEC 259
+I G MHG ++A+E F +MQK +PN +G +EGL+ F+ M E
Sbjct: 365 MICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRIFNSMEEVY 424
Query: 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ P ++HYGC++D+L RAG L +AEEV +P + + VW
Sbjct: 425 GIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPME-PSAAVW 465
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 28/226 (12%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
F S ++ C L + G +HA + + TAL DMY G L + +F++
Sbjct: 294 FVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEK 353
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ ++ + TWN +I GL R+ +A+ LF +M ++ P+ IT+L VL
Sbjct: 354 MEKKEVFTWNAMICGL----------GMHGRAEDAIELFFKMQKQKF-RPNGITLLGVLS 402
Query: 145 AIWKNGEVRNCQLIHG-----YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
A +G V I YG + G + C++D + G + A ++
Sbjct: 403 ACAHSGMVDEGLRIFNSMEEVYGIEPGMEHY-----GCVVDLLGRAGLLGEAEEVMYSMP 457
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV--GLKPNRSWR 243
++ V W ++ HG VE ER+ K+ L+P S R
Sbjct: 458 MEPSAAV-WGALLGACRKHG----DVELGERVGKILLELEPQNSGR 498
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 100/232 (43%), Gaps = 52/232 (22%)
Query: 45 QLHAVFSKVG-FQSHVYVNTALGDMYVSLGF--LKDSSKLFDELPERNLVTWNVIITGLV 101
Q+HAV + G FQ H YV+ L Y + F L + K+F+ +P N+ +N+II G +
Sbjct: 48 QVHAVALRTGHFQDH-YVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCL 106
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
+ N +A+ + +M + P++ T + A +H +
Sbjct: 107 Q----------NNEPCKAICCYYKMMIA-HARPNKFTYPTLFKACTAAEAAEEGVQVHAH 155
Query: 162 GEKRGFNAFDIHVS-------------------------------NCLIDTYAKCGCIFS 190
K+G + D+H+ N +ID Y KCG + +
Sbjct: 156 VIKQGLSG-DVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEA 214
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW 242
A +LF S++ KN+ SW ++SG A GM +EA E F M++ K SW
Sbjct: 215 AKELF--WSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKE---KNEISW 261
>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
Length = 698
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 147/282 (52%), Gaps = 26/282 (9%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
+R C +L + +G QLHA+ +K G + + +L MY G + + LFDE+ ++
Sbjct: 232 LRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDT 291
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
V+++ +++ GY + R+ EA +F++M AC EP T+++++PA
Sbjct: 292 VSYSALVS----------GYVQNGRAEEAFLVFKKMQACN-VEPDAATMVSLIPACSHLA 340
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
+++ + HG RG A + + N LID YAKCG I + ++F + +++VSW T
Sbjct: 341 ALQHGRCSHGSVIIRGL-ASETSICNALIDMYAKCGRIDLSRQVF--NMMPSRDIVSWNT 397
Query: 211 IISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGE-----------EGLKFFDKMVEEC 259
+I+G+ +HG+GKEA F M +G P+ I EG +F M
Sbjct: 398 MIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGY 457
Query: 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ P ++HY C++D+L R G L++A E +P + +V VW
Sbjct: 458 GLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLR-ADVRVW 498
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 80/297 (26%), Positives = 137/297 (46%), Gaps = 53/297 (17%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
+++ IR C+ +PN SK V + TAL DMY G L + ++FD +
Sbjct: 135 VHAYCIRACL---HPNRN-------SKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAM 184
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
P RN VTW + +I G+ +R +A LF+ M A S +I + L A
Sbjct: 185 PARNEVTW----------SALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRA 234
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
+R + +H K G +A D+ N L+ YAK G I A LF++ +V K+
Sbjct: 235 CASLDHLRMGEQLHALLAKSGVHA-DLTAGNSLLSMYAKAGLIDQAIALFDEMAV--KDT 291
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDI 265
VS++ ++SG+ +G +EA F++MQ ++P+ + + ++ C L +
Sbjct: 292 VSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMV---------SLIPACSHLAAL 342
Query: 266 KHYGC-------------------LIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+H C LID+ + GR++ + +V + +PS+ ++V W T
Sbjct: 343 QHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSR--DIVSWNT 397
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 129/287 (44%), Gaps = 41/287 (14%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+++T+ F ++ C L+ + G +H G Q+ ++V+TAL DMYV L D++ +F
Sbjct: 9 NNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIF 68
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALA-LFRRMAACEYTEPSEITILA 141
+P R+LV WN ++ GY+ + A+A L P+ T++A
Sbjct: 69 ATMPARDLVAWNAMLA----------GYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVA 118
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFN---------AFDIHVSNCLIDTYAKCGCIFSAS 192
+LP + + G + +H Y + + + + L+D YAKCG + A
Sbjct: 119 LLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYAR 178
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG---LKPNR--------- 240
++F+ ++ +N V+W+ +I GF + +A F+ M G L P
Sbjct: 179 RVFD--AMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACA 236
Query: 241 ---SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
R+GE+ ++ + V D+ L+ + +AG ++QA
Sbjct: 237 SLDHLRMGEQ----LHALLAKSGVHADLTAGNSLLSMYAKAGLIDQA 279
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 70/292 (23%), Positives = 115/292 (39%), Gaps = 56/292 (19%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
FLV+K++Q + D+ T LI C L+ G H G S
Sbjct: 311 FLVFKKMQACNVEP--------DAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETS 362
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
+ AL DMY G + S ++F+ +P R++V+WN +I GY EA
Sbjct: 363 ICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIA----------GYGIHGLGKEAT 412
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQ-----LIHGYGEKRGFNAFDIHVS 175
ALF M + P +T + +L A +G V + + HGYG +
Sbjct: 413 ALFLEMNNLGF-PPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYI---- 467
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
C++D ++ G + A + + + R ++ W ++ ++ +N + +KV
Sbjct: 468 -CMVDLLSRGGFLDEAYEFIQSMPL-RADVRVWVALLGACRVY-------KNIDLGKKV- 517
Query: 236 LKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+G EG F VL L +I AGR ++A EV
Sbjct: 518 --SRMIQELGPEGTGNF--------VL--------LSNIYSAAGRFDEAAEV 551
>gi|125583346|gb|EAZ24277.1| hypothetical protein OsJ_08028 [Oryza sativa Japonica Group]
Length = 613
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 149/292 (51%), Gaps = 24/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DS+T+ F+ + C L G QL K+GFQ + +L Y G + + F
Sbjct: 137 DSYTFPFVFKACAQLGALQEGRQLQGHLVKLGFQRDEHSQNSLISFYGKCGEADLARRAF 196
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+++ + T W+ ++ Y+R R E + F M + P E ++++
Sbjct: 197 EQMEDDEQTT--------ASWSALLAAYTRAGRWAECVESFGAMVRAGW-RPDESSMVSA 247
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + IH R + +S L+D YAKCGCI +A+ +F+ ++D
Sbjct: 248 LSACAHLGAHDVGRSIH-CALLRNTARLNTFMSTSLVDMYAKCGCIENAAAVFD--AMDD 304
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN +++ ++SG A+HG G++A+E F+ M + G +P+ + +G EEGL+
Sbjct: 305 KNAWTYSAMVSGLALHGDGRKALEVFDAMVREGHRPDAAVYVGVLNACSRAGLLEEGLRC 364
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
FD+M E ++ P+ +HYGC++D++ RAGRL+ A + +P+ T+ WR+
Sbjct: 365 FDRMRLEHKLTPNAQHYGCMVDLMARAGRLDDARALIGSMPTGPTD-TAWRS 415
>gi|125540774|gb|EAY87169.1| hypothetical protein OsI_08570 [Oryza sativa Indica Group]
Length = 613
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/292 (29%), Positives = 149/292 (51%), Gaps = 24/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DS+T+ F+ + C L G QL K+GFQ + +L Y G + + F
Sbjct: 137 DSYTFPFVFKACAQLGALQEGRQLQGHLVKLGFQRDEHSQNSLISFYGKCGEADLARRAF 196
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+++ + T W+ ++ Y+R R E + F M + P E ++++
Sbjct: 197 EQMEDDEQTT--------ASWSALLAAYTRAGRWAECVESFGAMVRAGW-RPDESSMVSA 247
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + IH R + +S L+D YAKCGCI +A+ +F+ ++D
Sbjct: 248 LSACAHLGAHDVGRSIH-CALLRNTARLNTFMSTSLVDMYAKCGCIENAAAVFD--AMDD 304
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN +++ ++SG A+HG G++A+E F+ M + G +P+ + +G EEGL+
Sbjct: 305 KNAWTYSAMVSGLALHGDGRKALEVFDAMVREGHRPDAAVYVGVLNACSRAGLLEEGLRC 364
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
FD+M E ++ P+ +HYGC++D++ RAGRL+ A + +P+ T+ WR+
Sbjct: 365 FDRMRLEHKLTPNAQHYGCMVDLMARAGRLDDARALIGNMPTGPTD-TAWRS 415
>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
Length = 562
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 90/297 (30%), Positives = 154/297 (51%), Gaps = 32/297 (10%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D FT ++R C L G Q+HA K G++ ++ V ++L MY+ G L + K
Sbjct: 86 LPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEK 145
Query: 81 LFDELPERNLVTWNVIITGLVK---WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
+ + RN+V WN +I G + + G++D Y+ M S P +I
Sbjct: 146 VIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSG--------------LRPDKI 191
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
T+++V+ + + + Q IH K G N+ + V + LI Y+KCGC+ + K D
Sbjct: 192 TLVSVISSSAELATLFQGQQIHAEAIKAGANS-AVAVLSSLISMYSKCGCLEDSMKALLD 250
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGE 246
+ + V W+++I+ + HG G+EAV FE+M++ GL N + E
Sbjct: 251 --CEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVTFLSLLYACSHNGLKE 308
Query: 247 EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+G+ FF MVE+ + P ++HY C++D+L R+G L++AE + +P + +VV+W+T
Sbjct: 309 KGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLE-ADVVIWKT 364
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 14/172 (8%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
+V G L + K+FDE+ ERN+ TWN +++GL+++ +G L LFR M
Sbjct: 33 HVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENG----------LFLFREMHE 82
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
+ P E T+ +VL + +H Y K G+ F++ V + L Y K G +
Sbjct: 83 LGFL-PDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYE-FNLVVGSSLAHMYMKSGSL 140
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
K+ + + +N+V+W T+I+G A +G + ++ + M+ GL+P++
Sbjct: 141 GEGEKVIKAMRI--RNVVAWNTLIAGNAQNGHFEGVLDLYNMMKMSGLRPDK 190
>gi|449434194|ref|XP_004134881.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Cucumis sativus]
Length = 436
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 98/315 (31%), Positives = 159/315 (50%), Gaps = 41/315 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DSF+ F+++ C + + ++ LHA +K+GF +HV+V T+L YV F + + +F
Sbjct: 55 DSFSILFMLKACASSNNLSILHHLHAHITKLGFTTHVFVATSLLHSYVLHSF-QLARLVF 113
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
DE+P +N VTWN +I+G L W+ +I Y AL
Sbjct: 114 DEMPHKNSVTWNTMISGYSKAGDVHTARQLFDRMPSRDLASWSAMIAAYINNRNYRGALL 173
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGE--VRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
LF+ M P ++ ++L G + + +HG+ K + ++ + L+
Sbjct: 174 LFQDMII-NGINPDQMAAGSILNGCAHMGSLGLLAGKSVHGFVVKNRWE-LNLELGTVLV 231
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D YAKCG + A ++F S +N+ +WT +I G A HG KEA+ FE M+ G++PN
Sbjct: 232 DMYAKCGFLKYACQIFNLMS--ERNVRTWTALICGLAHHGCCKEALVLFETMRHEGVEPN 289
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
G +EG K+F+ M+EEC + I+HYGC +D+L R+G LE+A V
Sbjct: 290 EFTFTGVLSACVHAGLVQEGRKYFN-MIEECGLEIRIQHYGCFVDLLGRSGLLEEAYGVI 348
Query: 289 SGIPSQITNVVVWRT 303
+ + NV+VW +
Sbjct: 349 KSMRLE-PNVIVWSS 362
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 85/198 (42%), Gaps = 15/198 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNL--GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
D ++ C + L G +H K ++ ++ + T L DMY GFLK + +
Sbjct: 186 DQMAAGSILNGCAHMGSLGLLAGKSVHGFVVKNRWELNLELGTVLVDMYAKCGFLKYACQ 245
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F+ + ERN+ TW +I GL + EAL LF M E EP+E T
Sbjct: 246 IFNLMSERNVRTWTALICGL----------AHHGCCKEALVLFETMRH-EGVEPNEFTFT 294
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
VL A G V+ + E+ G I C +D + G + A + + +
Sbjct: 295 GVLSACVHAGLVQEGRKYFNMIEECGLE-IRIQHYGCFVDLLGRSGLLEEAYGVIKSMRL 353
Query: 201 DRKNLVSWTTIISGFAMH 218
+ N++ W++++S H
Sbjct: 354 E-PNVIVWSSLLSACKQH 370
>gi|225432514|ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
mitochondrial [Vitis vinifera]
Length = 694
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 144/264 (54%), Gaps = 26/264 (9%)
Query: 52 KVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYS 111
++G + HV AL +V G ++ + +LFDE+PER++ +W + +I GYS
Sbjct: 375 ELGSKDHVSSWNALISGFVRNGMIEQARQLFDEMPERDVFSW----------SSMISGYS 424
Query: 112 RMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD 171
+ + + AL LF M A +P+EIT+++V AI G + + H Y D
Sbjct: 425 QNEQPDLALQLFHEMVA-GGVQPNEITMVSVFSAIATLGTLMEGRWAHEYILSNSIPLND 483
Query: 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS-WTTIISGFAMHGMGKEAVENFER 230
+++ LID YAKCG I A +LF + DR + VS W II G AMHG +++ F +
Sbjct: 484 -NLNAALIDMYAKCGSITIALQLFYEIQ-DRVSSVSPWNAIICGLAMHGHANVSLKLFSQ 541
Query: 231 MQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
+Q+V +KPN IG + G K+F M + P+IKHYGC+ID+L RAG
Sbjct: 542 LQRVRIKPNSITFIGVLSACCHAGLVDTGEKYFKGMKNLYNIEPNIKHYGCMIDLLGRAG 601
Query: 280 RLEQAEEVASGIPSQITNVVVWRT 303
RL++A E+ +P + +VV+W T
Sbjct: 602 RLKEAAEMIRKMPMK-ADVVIWGT 624
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 119/242 (49%), Gaps = 35/242 (14%)
Query: 21 LFDSFTYSFLIRTCVTLS-----YPNLG-----TQLHAVFSKVGFQSHVYVNTALGDMYV 70
+F ++ +I VTL+ Y ++G LHA+ K+G ++ V T L MY
Sbjct: 171 VFKDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLVHMYC 230
Query: 71 SLGFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDG 109
L ++ LFDE+PERN+VTWNV++ G +V W IIDG
Sbjct: 231 VCSSLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLFERIPAKDVVSWGTIIDG 290
Query: 110 YSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNA 169
Y ++ R EAL ++R M P+E+ I+ ++ A + V Q HG + GF+
Sbjct: 291 YVQIERLGEALRMYRSMLRTG-VGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDC 349
Query: 170 FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFE 229
+D + +I YA CG I A FE S D ++ SW +ISGF +GM ++A + F+
Sbjct: 350 YDF-IQATIIHFYAACGEINLAFLQFELGSKD--HVSSWNALISGFVRNGMIEQARQLFD 406
Query: 230 RM 231
M
Sbjct: 407 EM 408
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 71/302 (23%), Positives = 140/302 (46%), Gaps = 40/302 (13%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
+++C +L + G Q+H++ K G S+++V +L YV + ++ LFD +
Sbjct: 59 LKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFDTCSVLDP 118
Query: 91 VTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALALFRRMAAC 129
V+ N+++ G VK +T ++ G ++ N EA+ +F+ M
Sbjct: 119 VSCNIMLAGYVKSGSLDNARHLFEKMPIKGCVSYTTMVMGLAQNNCWLEAIGVFKDMRFA 178
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
P+E+T+ +V+ A G + NC+++H K G A +I +N L+ Y C +
Sbjct: 179 GVI-PNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATN-LVHMYCVCSSLG 236
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGL 249
+A LF++ + +N+V+W +++G++ G+ A + FER+ K SW +G
Sbjct: 237 NARVLFDE--IPERNVVTWNVMLNGYSKSGLVDLARDLFERIPA---KDVVSWGTIIDGY 291
Query: 250 KFFDKMVEECEVLPDIKHYGC------LIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+++ E + + G ++D++ GR E Q + ++ RT
Sbjct: 292 VQIERLGEALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSE------GQQFHGIIVRT 345
Query: 304 GF 305
GF
Sbjct: 346 GF 347
>gi|357150199|ref|XP_003575376.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g33350-like [Brachypodium distachyon]
Length = 523
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 92/314 (29%), Positives = 155/314 (49%), Gaps = 38/314 (12%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P + F Y ++R + L +H+ K GF ++ + T+L D Y G + D+
Sbjct: 109 PAPNQFVYPLVLRAACAIGV-QLVRSIHSHACKSGFHAYDVIRTSLLDGYSRYGMMLDAR 167
Query: 80 KLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNE 118
KLFD L ERN+++W +++G + W +I G ++ E
Sbjct: 168 KLFDGLTERNVISWTALVSGYARAGKIGDAIVLFDRMPERDVAAWNAMITGCTQNGLFVE 227
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
A+ + RM E + + T+ VL A G ++ +++HGY R F V N L
Sbjct: 228 AVGICSRMVD-EGFQLNGTTVSCVLSACGHLGMLKIGKVVHGYA-WRSCVGFGSSVVNGL 285
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
ID Y KCG + A +F++ S ++L +W ++I+ A+HG K A+ F+ M+ G++P
Sbjct: 286 IDMYGKCGNLKEARWMFDEFS--DRSLTTWNSLINCLALHGHSKSAIAVFDEMRDEGIEP 343
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ +G +EGL +F M +E + P+I+HYGC++D+L RAGR E A V
Sbjct: 344 DVVTFVGLLNACTHGGFVDEGLTYFKLMCDELRIEPEIEHYGCIVDLLGRAGRFEDAMNV 403
Query: 288 ASGIPSQITNVVVW 301
+ + Q + V+W
Sbjct: 404 INDMKVQ-PDEVIW 416
>gi|297724409|ref|NP_001174568.1| Os06g0114366 [Oryza sativa Japonica Group]
gi|218197444|gb|EEC79871.1| hypothetical protein OsI_21372 [Oryza sativa Indica Group]
gi|255676656|dbj|BAH93296.1| Os06g0114366 [Oryza sativa Japonica Group]
Length = 509
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 148/274 (54%), Gaps = 32/274 (11%)
Query: 42 LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP-ERNLVTWNVIITGL 100
LG + H ++ V AL DMY G + + F +P ++N+V+WN +++
Sbjct: 171 LGREAHRRVAERKVAMDVVAWNALVDMYAKCGDAAAAHRWFRRMPVKKNVVSWNTMMSA- 229
Query: 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHG 160
++R EALALF+ M A P + T +A L A + G + + +H
Sbjct: 230 ---------FARAGELEEALALFQEMQAAA-VRPDDATFVAALGACAQLGALDTGRWLHA 279
Query: 161 YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGM 220
Y + G +A + V N L+D YAKCG + A+++F+ + R+++ ++T++I G AMHG
Sbjct: 280 YMGRMGHSADGV-VGNALLDMYAKCGAVDQATEVFDGMA--RRDVYTYTSMILGLAMHGR 336
Query: 221 GKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYG 269
G++A+ F MQ+ G+ PN +G EEGL+ + M E P I+HYG
Sbjct: 337 GEDALSLFAGMQRAGVTPNEVTLLGVLTACCHAGLVEEGLQQLNAMPE-----PRIEHYG 391
Query: 270 CLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
C++D+L RAGRL++AEE+ + +P ++ ++W +
Sbjct: 392 CVVDMLGRAGRLDKAEELIAAMPVH-SDALIWSS 424
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 94/212 (44%), Gaps = 23/212 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ + C L + G LHA ++G + V AL DMY G + ++++F
Sbjct: 254 DDATFVAALGACAQLGALDTGRWLHAYMGRMGHSADGVVGNALLDMYAKCGAVDQATEVF 313
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + R++ T+ +I GL + R +AL+LF M T P+E+T+L V
Sbjct: 314 DGMARRDVYTYTSMILGL----------AMHGRGEDALSLFAGMQRAGVT-PNEVTLLGV 362
Query: 143 LPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G V Q ++ E R I C++D + G + A +L V
Sbjct: 363 LTACCHAGLVEEGLQQLNAMPEPR------IEHYGCVVDMLGRAGRLDKAEELIAAMPVH 416
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
L+ W+++++ HG VE ER+ +
Sbjct: 417 SDALI-WSSLLAACRAHG----DVERAERVMR 443
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 127/291 (43%), Gaps = 27/291 (9%)
Query: 52 KVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE-RNLVTWNVIITGLVKWTGIIDGY 110
K+G V L ++Y++ G L + L D P R++V+ ++T G+
Sbjct: 78 KLGLDRRRAVRDGLVELYLARGELASARALVDGFPAGRDVVSCTAMVT----------GH 127
Query: 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF 170
+R +EA+ LF MA + A A + G++ + H +R A
Sbjct: 128 ARHGFLDEAVVLFFAMADDRCVAIDAVAAAAAFSACAQIGDLALGREAHRRVAERKV-AM 186
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
D+ N L+D YAKCG +A + F V +KN+VSW T++S FA G +EA+ F+
Sbjct: 187 DVVAWNALVDMYAKCGDAAAAHRWFRRMPV-KKNVVSWNTMMSAFARAGELEEALALFQE 245
Query: 231 MQKVGLKPNRSWRIGEEG----LKFFDKMVEECEVLPDIKHYG------CLIDILERAGR 280
MQ ++P+ + + G L D + + H L+D+ + G
Sbjct: 246 MQAAAVRPDDATFVAALGACAQLGALDTGRWLHAYMGRMGHSADGVVGNALLDMYAKCGA 305
Query: 281 LEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITL--NSQRLFFFP 329
++QA EV G+ + +V + + L L ++ ++L QR P
Sbjct: 306 VDQATEVFDGMARR--DVYTYTSMILGLAMHGRGEDALSLFAGMQRAGVTP 354
>gi|52076160|dbj|BAD46673.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 678
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 151/302 (50%), Gaps = 35/302 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T L+ C L P+ G +H V + G+ VN +L Y L + ++F
Sbjct: 255 DDATLCILVDACAELPDPSTGFAIHKVVVQSGWNGIPEVNNSLISFYTKFSLLDCAVQIF 314
Query: 83 DELPERNLVTWNVII---------------------TGLVKWTGIIDGYSRMNRSNEALA 121
+ + R +WN +I T ++ WT +I G++R + ++EALA
Sbjct: 315 ESMKTRTTASWNSLIDAHARFGYIEQAALLFESAPETNIISWTAMIGGFARNSLTSEALA 374
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
F +M EY +P + T AVL A + + +++H + GF ++ ++V+N L+D
Sbjct: 375 HFVKMLTQEYIQPDDFTFGAVLHACASAPCLASGRMVHSCAFQGGFASY-LYVANNLVDM 433
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG + A+ +F+ ++ +K+LVSW T++ GFA++G+ KEA+E +E M + P+
Sbjct: 434 YAKCGDVEGANNVFD--AIHQKDLVSWNTMLFGFAINGLPKEALEVYEIMTYHNVSPDEV 491
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
G E+G FF+ M+ V P +H C++D+ R+G + +A E+
Sbjct: 492 TFTGLLTACSHSGLLEQGRAFFESMMSVHGVQPKPEHLSCVLDMYARSGNIAKAIEMMEQ 551
Query: 291 IP 292
P
Sbjct: 552 YP 553
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 33/199 (16%)
Query: 5 KQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTA 64
K L Q YI D FT+ ++ C + G +H+ + GF S++YV
Sbjct: 378 KMLTQEYIQP--------DDFTFGAVLHACASAPCLASGRMVHSCAFQGGFASYLYVANN 429
Query: 65 LGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFR 124
L DMY G ++ ++ +FD + +++LV+WN ++ G I+G + EAL ++
Sbjct: 430 LVDMYAKCGDVEGANNVFDAIHQKDLVSWNTMLFGFA-----INGLPK-----EALEVYE 479
Query: 125 RMAACEYTEPSEITILAVLPAIWKNGEVRNCQL-------IHGYGEKRGFNAFDIHVSNC 177
M P E+T +L A +G + + +HG K H+S C
Sbjct: 480 IMTY-HNVSPDEVTFTGLLTACSHSGLLEQGRAFFESMMSVHGVQPKPE------HLS-C 531
Query: 178 LIDTYAKCGCIFSASKLFE 196
++D YA+ G I A ++ E
Sbjct: 532 VLDMYARSGNIAKAIEMME 550
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 80/318 (25%), Positives = 124/318 (38%), Gaps = 77/318 (24%)
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGL-------------------- 100
V AL MY D+++ F E+PERN ++W ++
Sbjct: 161 VGNALVSMYAKCARAADAARAFREMPERNALSWCSLLHAFVVSGHMELAHELFDEMPSKS 220
Query: 101 -VKWTGIIDGYSRMNRSNEALALFRRM-----------------AACEYTEPSEITILAV 142
V W ++ G+SR + + LALF +M A E +PS T A+
Sbjct: 221 NVAWNTLLMGHSRSGNAKQCLALFNQMWMSGLTCDDATLCILVDACAELPDPS--TGFAI 278
Query: 143 LPAIWKNG-----EVRNCQLIHGYGEKRGFNAFDIHVS-------------NCLIDTYAK 184
+ ++G EV N LI Y + F+ D V N LID +A+
Sbjct: 279 HKVVVQSGWNGIPEVNN-SLISFYTK---FSLLDCAVQIFESMKTRTTASWNSLIDAHAR 334
Query: 185 CGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM-QKVGLKPNR--- 240
G I A+ LFE S N++SWT +I GFA + + EA+ +F +M + ++P+
Sbjct: 335 FGYIEQAALLFE--SAPETNIISWTAMIGGFARNSLTSEALAHFVKMLTQEYIQPDDFTF 392
Query: 241 ---SWRIGEEGLKFFDKMVEECEVLPDIKHY----GCLIDILERAGRLEQAEEVASGIPS 293
+MV C Y L+D+ + G +E A V I
Sbjct: 393 GAVLHACASAPCLASGRMVHSCAFQGGFASYLYVANNLVDMYAKCGDVEGANNVFDAIHQ 452
Query: 294 QITNVVVWRTGFLRLLIN 311
+ ++V W T IN
Sbjct: 453 K--DLVSWNTMLFGFAIN 468
>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 639
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 111/378 (29%), Positives = 165/378 (43%), Gaps = 103/378 (27%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFS---KVGFQSHVYVNTALGDMYVSLGFLK 76
P DSFTYSFLI+ LS L T L AV S K+G YV AL D Y G
Sbjct: 150 PQRDSFTYSFLIKA---LSSSGL-TPLRAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFL 205
Query: 77 DSSK-------------------------------LFDELPERNLVTWNVIITG------ 99
D+SK +FDE+P+++ V+WN ++ G
Sbjct: 206 DASKVFEEMPRRDTVSWNSAMAAMVRQGEVASARRMFDEMPDKDTVSWNTVLDGYTKAGK 265
Query: 100 ---------------LVKWTGIIDGYSRMNRSNEALALFRRM------------AACE-- 130
+V W+ ++ GY + A +F +M +AC
Sbjct: 266 MEDAFELFQCMPERNVVSWSTVVSGYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQN 325
Query: 131 ---------YTEPSEITI-------LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHV 174
+T+ E + +++L A ++G + + IH Y R HV
Sbjct: 326 GLVEEAGRLFTQMKEAAVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGR-STHV 384
Query: 175 SNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
N +ID + KCGC+ A +F DT + K+ VSW TII GFAMHG G +A++ F +M+
Sbjct: 385 CNAMIDMFCKCGCVNRADYVF-DTEIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQ 443
Query: 235 GLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQ 283
G +P+ I EEG + F M + ++P I+HYGC+ID+L R G +E+
Sbjct: 444 GFRPDAVTMINVLSACTHMGFVEEGRQHFSNMERDYGIVPQIEHYGCMIDLLGRGGLIEE 503
Query: 284 AEEVASGIPSQITNVVVW 301
A + +P N V+W
Sbjct: 504 AVGLIKSMPWD-PNEVIW 520
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 33/133 (24%)
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
D +V N LID Y+K G ASK+FE+ + R++ VSW + ++ G V + R
Sbjct: 187 DTYVGNALIDAYSKNGGFLDASKVFEE--MPRRDTVSWNSAMAAMVRQG----EVASARR 240
Query: 231 MQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
M FD+M ++ D + ++D +AG++E A E+
Sbjct: 241 M--------------------FDEMPDK-----DTVSWNTVLDGYTKAGKMEDAFELFQC 275
Query: 291 IPSQITNVVVWRT 303
+P + NVV W T
Sbjct: 276 MPER--NVVSWST 286
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 77/190 (40%), Gaps = 13/190 (6%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD-ELPER 88
++ C LG ++H +V A+ DM+ G + + +FD E+ E+
Sbjct: 353 ILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNAMIDMFCKCGCVNRADYVFDTEIAEK 412
Query: 89 NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148
+ V+WN II G++ ++AL F +M + P +T++ VL A
Sbjct: 413 DSVSWNT----------IIGGFAMHGHGDKALDFFAQMKLQGF-RPDAVTMINVLSACTH 461
Query: 149 NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSW 208
G V + E+ I C+ID + G I A L + D N V W
Sbjct: 462 MGFVEEGRQHFSNMERDYGIVPQIEHYGCMIDLLGRGGLIEEAVGLIKSMPWD-PNEVIW 520
Query: 209 TTIISGFAMH 218
+++S +H
Sbjct: 521 GSLLSACRLH 530
>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Glycine max]
Length = 780
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 139/280 (49%), Gaps = 36/280 (12%)
Query: 54 GFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK----------- 102
GF H+ +N A+ DMYV G + D+ LF+++ E+++V+W ++ G K
Sbjct: 304 GFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIF 363
Query: 103 ----------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEV 152
W +I Y + + AL+LF M + +P E+T++ L A + G +
Sbjct: 364 DAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAI 423
Query: 153 RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTII 212
IH Y +K N + H++ L+D YAKCG + A ++F +V+RK++ W+ +I
Sbjct: 424 DFGHWIHVYIKKHDIN-LNCHLATSLLDMYAKCGNLNKAMEVFH--AVERKDVYVWSAMI 480
Query: 213 SGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKFFDKMVEECEV 261
AM+G GK A++ F M + +KPN + EG + F++M +
Sbjct: 481 GALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGI 540
Query: 262 LPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+P I+HY C++DI RAG LE+A +P T VW
Sbjct: 541 VPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPT-AAVW 579
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 118/231 (51%), Gaps = 21/231 (9%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
FL++ + +HS S P + FT+ FL + L +LG+ LH + K S ++
Sbjct: 157 FLIFLHM----LHSCSEFP---NKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLSSDLF 209
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
+ +L + Y S G + ++F +P +++V+WN +I+ ++ ++AL
Sbjct: 210 ILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWN----------AMINAFALGGLPDKAL 259
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LF+ M + +P+ IT+++VL A K ++ + I Y E GF I ++N ++D
Sbjct: 260 LLFQEMEM-KDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLI-LNNAMLD 317
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
Y KCGCI A LF S K++VSWTT++ G A G EA F+ M
Sbjct: 318 MYVKCGCINDAKDLFNKMS--EKDIVSWTTMLDGHAKLGNYDEAHCIFDAM 366
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 90/197 (45%), Gaps = 15/197 (7%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYV--SLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
Q+HA + Y + L Y S L + +F+++P+ NL WN +I G
Sbjct: 90 QIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIRG--- 146
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
Y+ + ++ +F M P++ T + A + + ++HG
Sbjct: 147 -------YASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMV 199
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
K ++ D+ + N LI+ Y G A ++F T++ K++VSW +I+ FA+ G+
Sbjct: 200 IKASLSS-DLFILNSLINFYGSSGAPDLAHRVF--TNMPGKDVVSWNAMINAFALGGLPD 256
Query: 223 EAVENFERMQKVGLKPN 239
+A+ F+ M+ +KPN
Sbjct: 257 KALLLFQEMEMKDVKPN 273
Score = 44.3 bits (103), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 70/179 (39%), Gaps = 12/179 (6%)
Query: 41 NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGL 100
+ G +H K + ++ T+L DMY G L + ++F + +++ W+ +I L
Sbjct: 424 DFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGAL 483
Query: 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHG 160
+ + AL LF M Y +P+ +T +L A G V + +
Sbjct: 484 AMY----------GQGKAALDLFSSMLE-AYIKPNAVTFTNILCACNHAGLVNEGEQLFE 532
Query: 161 YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
E I C++D + + G + A+ E + V W ++ + HG
Sbjct: 533 QMEPLYGIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAV-WGALLGACSRHG 590
>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 658
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 92/299 (30%), Positives = 151/299 (50%), Gaps = 39/299 (13%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHA-VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
SFT+S L++ C ++ NLG Q HA F GF VYV + DMYV G + + K+F
Sbjct: 150 SFTFSALLKACGSMGDLNLGRQFHAQTFRLRGF-CFVYVGNTMIDMYVKCGSIVCARKVF 208
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
DE+PER++++W +I +V WT ++ G+++ + EAL
Sbjct: 209 DEMPERDVISWTELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALE 268
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD-IHVSNCLID 180
F RM E+T+ + A + G + +K G++ D + + + LID
Sbjct: 269 YFDRMEK-SGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALID 327
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM-QKVGLKPN 239
Y+KCG + A +F S++ KN+ S++++I G A HG +EA++ F M + +KPN
Sbjct: 328 MYSKCGNVEEAVNVF--VSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPN 385
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+G ++G + F M + V P HY C++D+L RAGRL++A E+
Sbjct: 386 TVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALEL 444
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 103/236 (43%), Gaps = 44/236 (18%)
Query: 34 CVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTW 93
C+ L N Q+H + G Y+ T L LG D P R V
Sbjct: 60 CINL---NQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVP------MDPYPRR--VIE 108
Query: 94 NVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVR 153
V WT +I GY+ + +EA+A++ M E T P T A+L A G++
Sbjct: 109 PVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEIT-PVSFTFSALLKACGSMGDLN 167
Query: 154 NCQLIHGYGEK-RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT-------------- 198
+ H + RGF F ++V N +ID Y KCG I A K+F++
Sbjct: 168 LGRQFHAQTFRLRGF-CF-VYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAA 225
Query: 199 ---------------SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
S+ K++V+WT +++GFA + +EA+E F+RM+K G++ +
Sbjct: 226 YARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIRAD 281
>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Brachypodium distachyon]
Length = 600
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 107/375 (28%), Positives = 164/375 (43%), Gaps = 97/375 (25%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P DSFTYSFLI+ + L +H+ K+G YV AL D Y G D+S
Sbjct: 116 PHRDSFTYSFLIKALSSAGVAPL-RAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFSDAS 174
Query: 80 KLFDELPERNLVT-------------------------------WNVIITG--------- 99
K+F+E+P R++V+ WN ++ G
Sbjct: 175 KVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRMFDEMLEKDTVSWNTLLDGYTKAGDVEE 234
Query: 100 ------------LVKWTGIIDGYSRMNRSNEALALFRRM------------AACE----- 130
+V W+ ++ GY + A +F +M +AC
Sbjct: 235 AFKLFQCMPERNVVSWSTVVSGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGLV 294
Query: 131 ------YTEPSEITI-------LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
+T+ E ++ +++L A ++G + + IH Y R HV N
Sbjct: 295 EEAGKLFTQMKEASVELDVAAVVSILAACAESGSLALGKRIHRYVRTRQLGR-STHVCNA 353
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
LID + KCGCI A +F DT + K+ VSW TII GFAMHG G +A++ F +M+ G
Sbjct: 354 LIDMFCKCGCINRADYVF-DTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFC 412
Query: 238 PNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
P+ I EEG ++F M + V+P I+HYGC+ID+L R G +++A +
Sbjct: 413 PDAVTMINVLSACTHMGFVEEGRRYFANMERDYGVVPQIEHYGCMIDLLGRGGLIKEAVD 472
Query: 287 VASGIPSQITNVVVW 301
+ +P N V+W
Sbjct: 473 LIKSMPWD-PNEVIW 486
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 77/190 (40%), Gaps = 13/190 (6%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD-ELPER 88
++ C LG ++H +V AL DM+ G + + +FD E+ E+
Sbjct: 319 ILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNALIDMFCKCGCINRADYVFDTEIVEK 378
Query: 89 NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148
+ V+WN II G++ ++AL F +M + P +T++ VL A
Sbjct: 379 DSVSWNT----------IIGGFAMHGHGDKALDFFAQMKLQGFC-PDAVTMINVLSACTH 427
Query: 149 NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSW 208
G V + E+ I C+ID + G I A L + D N V W
Sbjct: 428 MGFVEEGRRYFANMERDYGVVPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWD-PNEVIW 486
Query: 209 TTIISGFAMH 218
+++S +H
Sbjct: 487 GSLLSACRLH 496
>gi|359481906|ref|XP_003632690.1| PREDICTED: pentatricopeptide repeat-containing protein At2g35030,
mitochondrial-like [Vitis vinifera]
Length = 635
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 131/242 (54%), Gaps = 33/242 (13%)
Query: 75 LKDSSKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRM 113
L ++ LF+ +PER+L +WN +ITGL++ WT +I G +
Sbjct: 255 LDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNEMPKKNVISWTTMITGCVQE 314
Query: 114 NRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIH 173
S EAL +F RM + +P++ T ++VL A + Q +H K +
Sbjct: 315 GESEEALKIFSRMLSTNGAKPNQGTFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFV 374
Query: 174 VSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
VS LI+ Y+KCG + +A K+F+D +++LVSW II+ +A HG GKEA+ F+ M+K
Sbjct: 375 VS-ALINMYSKCGELGTARKMFDDGMTSQRDLVSWNGIIAAYAHHGYGKEAINFFKEMRK 433
Query: 234 VGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLE 282
G KP+ +G EEGLK+FD++V++ +L HY CL+D+ RAGRL+
Sbjct: 434 SGFKPDDVTYVGLLSACSHAGLVEEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLK 493
Query: 283 QA 284
+A
Sbjct: 494 EA 495
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 116/271 (42%), Gaps = 58/271 (21%)
Query: 21 LFDSFTYSFLIR-TCVTLSYPNLGT--QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD 77
LFD +I T V Y G + +F +V + +V TA+ Y+ + D
Sbjct: 74 LFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGYIRSNKISD 133
Query: 78 SSKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRS 116
+ KLF+E+P +N+V+WN +I G +V W ++ ++ R
Sbjct: 134 AEKLFNEMPNKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSWNTVMSMLAQCGRI 193
Query: 117 NEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQL----------------IHG 160
EA LF RM E I+ A++ + KNG + +L I G
Sbjct: 194 EEARRLFDRMP-----ERDVISWTAMIAGLSKNGRIDEARLLFDRMPERNVVSWNAMITG 248
Query: 161 YGEK----RGFNAF------DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
Y + + F D+ N +I + G + A KLF + + +KN++SWTT
Sbjct: 249 YAQNLRLDEALDLFERMPERDLPSWNTMITGLIQNGDLRRARKLFNE--MPKKNVISWTT 306
Query: 211 IISGFAMHGMGKEAVENFERMQKV-GLKPNR 240
+I+G G +EA++ F RM G KPN+
Sbjct: 307 MITGCVQEGESEEALKIFSRMLSTNGAKPNQ 337
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 120/260 (46%), Gaps = 48/260 (18%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVK----------------------WTGIIDGY 110
G + ++ +LFDE+ E +++TW +I+G +K WT ++ GY
Sbjct: 66 GRIMEARRLFDEMREPDVITWTTVISGYIKCGMIEEARRLFDRVDAKKNVVTWTAMVGGY 125
Query: 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF 170
R N+ ++A LF M + ++ ++ +NG + + + +R ++
Sbjct: 126 IRSNKISDAEKLFNEMP-----NKNVVSWNTMIDGYAQNGRIDSAMYLFEKMPERNVVSW 180
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
N ++ A+CG I A +LF+ + ++++SWT +I+G + +G EA F+R
Sbjct: 181 -----NTVMSMLAQCGRIEEARRLFD--RMPERDVISWTAMIAGLSKNGRIDEARLLFDR 233
Query: 231 MQKVGLKPNRSWRIG-------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQ 283
M + + + G +E L F++M E D+ + +I L + G L +
Sbjct: 234 MPERNVVSWNAMITGYAQNLRLDEALDLFERMPER-----DLPSWNTMITGLIQNGDLRR 288
Query: 284 AEEVASGIPSQITNVVVWRT 303
A ++ + +P + NV+ W T
Sbjct: 289 ARKLFNEMPKK--NVISWTT 306
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 39/219 (17%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE- 84
T+ ++ C L+ G Q+H + SK +Q +V +AL +MY G L + K+FD+
Sbjct: 339 TFVSVLGACSNLAGLGEGQQVHQIISKTVYQDSTFVVSALINMYSKCGELGTARKMFDDG 398
Query: 85 -LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
+R+LV+WN GII Y+ EA+ F+ M + +P ++T + +L
Sbjct: 399 MTSQRDLVSWN----------GIIAAYAHHGYGKEAINFFKEMRKSGF-KPDDVTYVGLL 447
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN-----------CLIDTYAKCGCIFSAS 192
A G V + G FD V + CL+D + G + A
Sbjct: 448 SACSHAGLV-----------EEGLKYFDELVKDRSILVREDHYACLVDLCGRAGRLKEAF 496
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENF 228
E V W +++G +H +GK+A +
Sbjct: 497 GFIERLETKPSARV-WGALLAGCNVHANVKIGKQAAKKL 534
>gi|357116863|ref|XP_003560196.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Brachypodium distachyon]
Length = 528
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 139/273 (50%), Gaps = 27/273 (9%)
Query: 41 NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG-FLKDSSKLFDELPERNLVTWNVIITG 99
L + H G V AL DMY G LP +N+V+WN +I
Sbjct: 171 GLARETHRRVLDAGVALDVVACNALIDMYAKCGDAAAARRCFRRMLPAKNVVSWNTMIAA 230
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
+R + EAL+ FR M P + T +AVL A G + + +H
Sbjct: 231 C----------ARSGDTREALSWFREMQRSGCVRPDDATFVAVLGACADLGALDAGRWVH 280
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
Y R A + V N L+D YAKCG + A ++F+ ++ R+++ ++T++ISG AMHG
Sbjct: 281 AYMMGRHTKA--VVVGNALLDMYAKCGAVDGAKEVFD--AMPRRDVYTYTSMISGLAMHG 336
Query: 220 MGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHY 268
G+EA+ M++ G++PN +G EEGL F+ + E V P I+HY
Sbjct: 337 RGQEALALLADMRRAGVRPNAVTFLGVLSACCHAGLVEEGLLHFNAIPESLGVAPGIEHY 396
Query: 269 GCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
GC++D+L RAGRL++AEE+ + +P++ + ++W
Sbjct: 397 GCVVDMLGRAGRLDEAEELVARMPAR-PDALIW 428
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 87/200 (43%), Gaps = 26/200 (13%)
Query: 46 LHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE-LPERNLVTWNVIITGLVKWT 104
LHA K+G V L +Y++ G + LF+ P+ +V WT
Sbjct: 77 LHAHVVKLGCLDRRRVRDGLVALYLACGQGAVARALFERGAPD------------VVSWT 124
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN-GEVRNCQLIHGYGE 163
++ G++R+ EA ALF MA + A + G R
Sbjct: 125 AMVTGHTRLGLFEEAAALFLAMADGVAVDAVAAAAAFAACAGAGDLGLARETH------- 177
Query: 164 KRGFN---AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGM 220
+R + A D+ N LID YAKCG +A++ + KN+VSW T+I+ A G
Sbjct: 178 RRVLDAGVALDVVACNALIDMYAKCG-DAAAARRCFRRMLPAKNVVSWNTMIAACARSGD 236
Query: 221 GKEAVENFERMQKVG-LKPN 239
+EA+ F MQ+ G ++P+
Sbjct: 237 TREALSWFREMQRSGCVRPD 256
>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 616
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 98/311 (31%), Positives = 150/311 (48%), Gaps = 40/311 (12%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
SFT+S L L P+LG+QLH GF + +YV + MYV G L + K+FD
Sbjct: 112 SFTFSALFSL---LKNPSLGSQLHLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFD 168
Query: 84 ELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALAL 122
E+P R++VTW +I +V WT ++ GYS+ +AL
Sbjct: 169 EMPHRDVVTWTELIVAYARSGDMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQF 228
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF-NAFDIHVSNCLIDT 181
FR+M EIT++ + A + G I E F + ++ V + LID
Sbjct: 229 FRKMREAGVVT-DEITLVGAISACAQLGVSGYADWIREIAESSRFGSGSNVFVGSALIDM 287
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
Y+KCG + A +F+ + N+ S++++I GFA+HG + A++ F M + G+KPN
Sbjct: 288 YSKCGNVEEAYNVFK--GMKEMNVFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHV 345
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+G E+G + F M E V P HY C+ D+L RAG LE+A ++
Sbjct: 346 TFVGLFTACSHAGMVEQGQQLFGAMKECYGVSPTADHYACMADLLGRAGHLEKALQLVQT 405
Query: 291 IPSQITNVVVW 301
+P + N VW
Sbjct: 406 MPME-PNGGVW 415
>gi|357494311|ref|XP_003617444.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518779|gb|AET00403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 542
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 97/337 (28%), Positives = 167/337 (49%), Gaps = 55/337 (16%)
Query: 2 LVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYV 61
++Y Q+Q Y+ TY + + L + + G QLH K+G Q+ ++
Sbjct: 118 MLYSQIQPQYL-------------TYPSVFKAYAQLGHAHYGAQLHGRVVKLGLQNDQFI 164
Query: 62 NTALGDMYVSLGFLKDSSKLFD----ELPERNLVTWNVIITGLVK--------------- 102
+ MY + G + ++ ++FD EL + ++V N +I G K
Sbjct: 165 CNTIIYMYANGGLMSEARRVFDGKKLELYDHDVVAINSMIMGYAKCGEIDESRNLFDDMI 224
Query: 103 ------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQ 156
W +I GY R + EAL LF +M E E SE T++++L A G +++ +
Sbjct: 225 TRTSVSWNSMISGYVRNGKLMEALELFNKMQV-EGFEVSEFTMVSLLNACAHLGALQHGK 283
Query: 157 LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFA 216
+H Y ++ F ++ V +ID Y KCG + +A ++FE + R+ L W +II G A
Sbjct: 284 WVHDYIKRNHFE-LNVIVVTAIIDMYCKCGSVENAVEVFE--TCPRRGLSCWNSIIIGLA 340
Query: 217 MHGMGKEAVENFERMQKVGL-KPNRSWRIG-----------EEGLKFFDKMVEECEVLPD 264
M+G +EA E F +++ L KP+ IG + +F+ M+ + E+ P
Sbjct: 341 MNGHEREAFEFFSKLESSKLLKPDSVSFIGVLTACKHLGAINKARDYFELMMNKYEIEPS 400
Query: 265 IKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
IKHY C++D+L +AG LE+AEE+ G+P + + ++W
Sbjct: 401 IKHYTCIVDVLGQAGLLEEAEELIKGMPLK-PDAIIW 436
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 66/285 (23%), Positives = 111/285 (38%), Gaps = 59/285 (20%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT 132
G + + KLF +P NL +WN II +SR + A++LF M +
Sbjct: 75 GNINYAYKLFVRMPNPNLYSWNTIIR----------AFSRSSTPQFAISLFVDMLYSQ-I 123
Query: 133 EPSEITILAVLPAIWKNGEVRNCQLIHGY------------------------------- 161
+P +T +V A + G +HG
Sbjct: 124 QPQYLTYPSVFKAYAQLGHAHYGAQLHGRVVKLGLQNDQFICNTIIYMYANGGLMSEARR 183
Query: 162 ---GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218
G+K D+ N +I YAKCG I + LF+D + + VSW ++ISG+ +
Sbjct: 184 VFDGKKLELYDHDVVAINSMIMGYAKCGEIDESRNLFDD--MITRTSVSWNSMISGYVRN 241
Query: 219 GMGKEAVENFERMQKVGLKP---------NRSWRIGE-EGLKFFDKMVEECEVLPDIKHY 268
G EA+E F +MQ G + N +G + K+ ++ ++
Sbjct: 242 GKLMEALELFNKMQVEGFEVSEFTMVSLLNACAHLGALQHGKWVHDYIKRNHFELNVIVV 301
Query: 269 GCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSY 313
+ID+ + G +E A EV P + + W + + L +N +
Sbjct: 302 TAIIDMYCKCGSVENAVEVFETCPRR--GLSCWNSIIIGLAMNGH 344
>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
Length = 575
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 160/322 (49%), Gaps = 48/322 (14%)
Query: 29 FLIRTCVTLSYPNLGTQLHAVFSKVGF----QSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
+RT + +Y G A ++ F + V++ + YV+ G + ++ ++FD
Sbjct: 75 LFVRTALVEAYAKAG---RADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAEARRVFDG 131
Query: 85 LPERNLVTWNVIITGLV---------------------KWTGIIDGYSRMNRSNEALALF 123
+ ER++V+WN +I G W+ ++ Y++ RS +AL L+
Sbjct: 132 MRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELW 191
Query: 124 RRM-AACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
R M AAC P T+++VL A G + +H + E G D+ + LID Y
Sbjct: 192 REMRAAC--VNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVE-LDVKLGTALIDMY 248
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW 242
AKCG I ++ ++F V K++++W+++I G A HG G +A+ F RM GL+PN
Sbjct: 249 AKCGDIENSVRVFHSMPV--KDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVT 306
Query: 243 RIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
IG +G K+F M V P ++HYGC++D+L R+G +E+A+++ +
Sbjct: 307 FIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDM 366
Query: 292 PSQITNVVVWRT--GFLRLLIN 311
P + + V+WR G R+ N
Sbjct: 367 PFE-PDAVIWRALLGACRIYKN 387
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 92/197 (46%), Gaps = 26/197 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ C + +G ++H G + V + TAL DMY G +++S ++F
Sbjct: 202 DCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDIENSVRVF 261
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+P ++++TW+ +I GL G+ ++AL+LF RM + E +P+E+T + V
Sbjct: 262 HSMPVKDVLTWSSMIIGLAN-----HGF-----GHDALSLFSRMLS-EGLQPNEVTFIGV 310
Query: 143 LPAIWKNGEVRNCQ-------LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
L + G V + + ++HG K + C++D + G I A +L
Sbjct: 311 LISCTHLGLVSDGKKYFSSMSVVHGVTPK-------VQHYGCMVDLLGRSGHIEEAKQLI 363
Query: 196 EDTSVDRKNLVSWTTII 212
D + + V W ++
Sbjct: 364 RDMPFE-PDAVIWRALL 379
>gi|224074129|ref|XP_002304264.1| predicted protein [Populus trichocarpa]
gi|222841696|gb|EEE79243.1| predicted protein [Populus trichocarpa]
Length = 499
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 157/293 (53%), Gaps = 26/293 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D + SF+IR + + G Q+HA G QS + T L D+Y ++ K+F
Sbjct: 23 DPVSLSFVIRCYIRICSLIGGEQVHARILSDGHQSDSLLLTNLMDLYSLCDKGSEACKVF 82
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY-TEPSEITILA 141
DE+ +R+ + WNV+I+ Y R R+ + L +F M + E EP ++T L
Sbjct: 83 DEMRQRDTIAWNVLISC----------YMRNRRTRDVLVIFDGMLSGELGCEPDDVTCLL 132
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+L A G + + +HG+ +RG++ ++ N LI Y++ G + A +F+ +
Sbjct: 133 LLQACANLGALEFGEKVHGHIVERGYDNA-TNLCNSLIAMYSQFGNLDKAFGVFK--GMH 189
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
KN+V+W+ IISG AM+G G+EA+ FE M K+G+ P+ G ++G+
Sbjct: 190 NKNVVTWSAIISGLAMNGYGREAIGAFEEMLKMGVLPDDLTFTGVLSACSNCGLVDKGMI 249
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F +M +E ++P+I HYGC++D+L RAG+L QA ++ + + + +WRT
Sbjct: 250 IFARMSKEFGIVPNIHHYGCMVDLLGRAGQLHQAYQLIMSMRVK-PDSTIWRT 301
>gi|449443656|ref|XP_004139593.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05750,
chloroplastic-like [Cucumis sativus]
Length = 525
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 153/317 (48%), Gaps = 47/317 (14%)
Query: 23 DSFTYSFLIRTCVTLSYPNL--GTQLHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSS 79
+ T+ L+ C + + LH K G + HV V TAL DMY L +
Sbjct: 91 NHITFITLLSACADFPSESFFFASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHAR 150
Query: 80 KLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNE 118
K+F L +N V+WN ++ G ++ WT +I+G + S +
Sbjct: 151 KVFYNLGVKNSVSWNTMLNGFMRNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQ 210
Query: 119 ALALFRRM----AACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHV 174
AL F +M A +Y ++I+AVL A G + +H + + F +I +
Sbjct: 211 ALECFHQMQRSGVAADY-----VSIIAVLAACADLGALTLGLWVHRFVMPQEFKD-NIKI 264
Query: 175 SNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
SN LID Y++CGCI A ++F + ++ LVSW +II GFA++G E++E F MQK
Sbjct: 265 SNSLIDMYSRCGCIEFARQVF--VKMAKRTLVSWNSIIVGFAVNGFADESLEFFYAMQKE 322
Query: 235 GLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQ 283
G KP+ G +GL+ FD M ++ P I+HYGC++D+ RAGRLE
Sbjct: 323 GFKPDGVSYTGALTACSHAGLVNKGLELFDNMKSVHKITPRIEHYGCIVDLYGRAGRLED 382
Query: 284 AEEVASGIPSQITNVVV 300
A + +P + VV+
Sbjct: 383 ALNMIEEMPMKPNEVVL 399
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 73/288 (25%), Positives = 118/288 (40%), Gaps = 56/288 (19%)
Query: 97 ITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI--WKNGEVRN 154
+ +V WT + Y R + +EA A F RM EP+ IT + +L A + +
Sbjct: 54 VDPIVLWTSSLARYCRNGQLSEAAAEFTRMRLAG-VEPNHITFITLLSACADFPSESFFF 112
Query: 155 CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR------------ 202
+HGY K G + + V LID Y+KC + A K+F + V
Sbjct: 113 ASSLHGYACKYGLDTGHVMVGTALIDMYSKCAQLGHARKVFYNLGVKNSVSWNTMLNGFM 172
Query: 203 -----------------KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN------ 239
++ +SWT +I+G HG ++A+E F +MQ+ G+ +
Sbjct: 173 RNGEIELAIQLFDEMPTRDAISWTALINGLLKHGYSEQALECFHQMQRSGVAADYVSIIA 232
Query: 240 ---RSWRIGEEGLKFF-DKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQI 295
+G L + + V E +IK LID+ R G +E A +V + +
Sbjct: 233 VLAACADLGALTLGLWVHRFVMPQEFKDNIKISNSLIDMYSRCGCIEFARQVFVKMAKR- 291
Query: 296 TNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAALYALTQILGFKP 343
+V W + + +N + + L FF YA+ Q GFKP
Sbjct: 292 -TLVSWNSIIVGFAVNGF-------ADESLEFF----YAM-QKEGFKP 326
>gi|125606358|gb|EAZ45394.1| hypothetical protein OsJ_30043 [Oryza sativa Japonica Group]
Length = 494
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 151/302 (50%), Gaps = 35/302 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T L+ C L P+ G +H V + G+ VN +L Y L + ++F
Sbjct: 71 DDATLCILVDACAELPDPSTGFAIHKVVVQSGWNGIPEVNNSLISFYTKFSLLDCAVQIF 130
Query: 83 DELPERNLVTWNVII---------------------TGLVKWTGIIDGYSRMNRSNEALA 121
+ + R +WN +I T ++ WT +I G++R + ++EALA
Sbjct: 131 ESMKTRTTASWNSLIDAHARFGYIEQAALLFESAPETNIISWTAMIGGFARNSLTSEALA 190
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
F +M EY +P + T AVL A + + +++H + GF ++ ++V+N L+D
Sbjct: 191 HFVKMLTQEYIQPDDFTFGAVLHACASAPCLASGRMVHSCAFQGGFASY-LYVANNLVDM 249
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG + A+ +F+ ++ +K+LVSW T++ GFA++G+ KEA+E +E M + P+
Sbjct: 250 YAKCGDVEGANNVFD--AIHQKDLVSWNTMLFGFAINGLPKEALEVYEIMTYHNVSPDEV 307
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
G E+G FF+ M+ V P +H C++D+ R+G + +A E+
Sbjct: 308 TFTGLLTACSHSGLLEQGRAFFESMMSVHGVQPKPEHLSCVLDMYARSGNIAKAIEMMEQ 367
Query: 291 IP 292
P
Sbjct: 368 YP 369
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 87/193 (45%), Gaps = 21/193 (10%)
Query: 5 KQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTA 64
K L Q YI D FT+ ++ C + G +H+ + GF S++YV
Sbjct: 194 KMLTQEYIQP--------DDFTFGAVLHACASAPCLASGRMVHSCAFQGGFASYLYVANN 245
Query: 65 LGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFR 124
L DMY G ++ ++ +FD + +++LV+WN ++ G I+G + EAL ++
Sbjct: 246 LVDMYAKCGDVEGANNVFDAIHQKDLVSWNTMLFGFA-----INGLPK-----EALEVYE 295
Query: 125 RMAACEYTEPSEITILAVLPAIWKNGEVRNCQ-LIHGYGEKRGFNAFDIHVSNCLIDTYA 183
M P E+T +L A +G + + G H+S C++D YA
Sbjct: 296 IMTY-HNVSPDEVTFTGLLTACSHSGLLEQGRAFFESMMSVHGVQPKPEHLS-CVLDMYA 353
Query: 184 KCGCIFSASKLFE 196
+ G I A ++ E
Sbjct: 354 RSGNIAKAIEMME 366
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 119/289 (41%), Gaps = 66/289 (22%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM-- 126
+V G ++ + +LFDE+P ++ V WN ++ G+SR + + LALF +M
Sbjct: 16 FVVSGHMELAHELFDEMPSKSNVAWNTLLM----------GHSRSGNAKQCLALFNQMWM 65
Query: 127 ---------------AACEYTEPSEITILAVLPAIWKNG-----EVRNCQLIHGYGEKRG 166
A E +PS T A+ + ++G EV N LI Y +
Sbjct: 66 SGLTCDDATLCILVDACAELPDPS--TGFAIHKVVVQSGWNGIPEVNN-SLISFYTK--- 119
Query: 167 FNAFDIHVS-------------NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIIS 213
F+ D V N LID +A+ G I A+ LFE S N++SWT +I
Sbjct: 120 FSLLDCAVQIFESMKTRTTASWNSLIDAHARFGYIEQAALLFE--SAPETNIISWTAMIG 177
Query: 214 GFAMHGMGKEAVENFERM-QKVGLKPNR------SWRIGEEGLKFFDKMVEECEVLPDIK 266
GFA + + EA+ +F +M + ++P+ +MV C
Sbjct: 178 GFARNSLTSEALAHFVKMLTQEYIQPDDFTFGAVLHACASAPCLASGRMVHSCAFQGGFA 237
Query: 267 HY----GCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLIN 311
Y L+D+ + G +E A V I + ++V W T IN
Sbjct: 238 SYLYVANNLVDMYAKCGDVEGANNVFDAIHQK--DLVSWNTMLFGFAIN 284
>gi|242037745|ref|XP_002466267.1| hypothetical protein SORBIDRAFT_01g004770 [Sorghum bicolor]
gi|241920121|gb|EER93265.1| hypothetical protein SORBIDRAFT_01g004770 [Sorghum bicolor]
Length = 537
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 145/294 (49%), Gaps = 40/294 (13%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVII----- 97
G +HA+ G V+V+T L +Y G L S +LFD +P ++ V+WN ++
Sbjct: 142 GKMVHALIVTSGIVPDVFVSTELIRLYGEYGELLVSRRLFDAMPVKSTVSWNAMVHQYIR 201
Query: 98 ----------------TGLVKWTGIIDGYSRMNRSNEALALFRRM---AACEYTEPSEIT 138
+V W II GY + R EAL LFR+M ++C P+ T
Sbjct: 202 HSNVGDAYELFLAMPKRDVVSWNTIIAGYCLIGRFMEALELFRQMMSPSSCP-VHPNGPT 260
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
I VL A G + +H Y ++ N D + LID YAKCG I A ++FE
Sbjct: 261 ISTVLAACAGAGCLETGIWVHAYIDRNRMND-DGSLDRSLIDMYAKCGSIEKALQVFEKA 319
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EE 247
+++L SWTT+I G AMHG +A+ F MQ G++P+ +G +E
Sbjct: 320 P-GKRDLYSWTTVICGLAMHGKAADALRMFGMMQDNGIRPDDVTLVGVLNACAHGGLVDE 378
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
GL F + E+ + P I+HYGC+ID+L R GRL++A + + + N V+W
Sbjct: 379 GLHHFYSL-EKYAITPKIEHYGCVIDLLGRVGRLQEAYSIIRTMRMK-PNAVIW 430
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 113/255 (44%), Gaps = 60/255 (23%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQ-------LHAVFSKVGF-QSHVYVNTALGDMYVSLGFL 75
+ + + L+R +LS P G + +H + K G + ++ TAL Y +LG
Sbjct: 5 TLSSTALLRLIKSLS-PAAGPRAHLAAAAIHGLLFKEGLLHAGSHLPTALLSAYAALGRP 63
Query: 76 KDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA------- 128
+ + LFDE+P+ GLV T + ++ ++ +ALA+F M A
Sbjct: 64 RHARDLFDEMPD----------PGLVTRTAMARAHAASGQTAQALAVFGDMLADGVLPDN 113
Query: 129 ---------CEYTE--PSEITILA-------VLPAIWKNGEVRNC----QLIHGYGE--- 163
C T P+ + + A V I +G V + +LI YGE
Sbjct: 114 VALAVALAACHGTGSFPAALGMAAARRPGKMVHALIVTSGIVPDVFVSTELIRLYGEYGE 173
Query: 164 ----KRGFNAFDIHVS---NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFA 216
+R F+A + + N ++ Y + + A +LF ++ ++++VSW TII+G+
Sbjct: 174 LLVSRRLFDAMPVKSTVSWNAMVHQYIRHSNVGDAYELF--LAMPKRDVVSWNTIIAGYC 231
Query: 217 MHGMGKEAVENFERM 231
+ G EA+E F +M
Sbjct: 232 LIGRFMEALELFRQM 246
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 98/239 (41%), Gaps = 24/239 (10%)
Query: 8 QQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGD 67
+Q+ S P+ P + T S ++ C G +HA + ++ +L D
Sbjct: 244 RQMMSPSSCPVHP--NGPTISTVLAACAGAGCLETGIWVHAYIDRNRMNDDGSLDRSLID 301
Query: 68 MYVSLGFLKDSSKLFDELP-ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM 126
MY G ++ + ++F++ P +R+L +W +I GL + ++ +AL +F M
Sbjct: 302 MYAKCGSIEKALQVFEKAPGKRDLYSWTTVICGL----------AMHGKAADALRMFGMM 351
Query: 127 AACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG 186
P ++T++ VL A G V L H Y ++ I C+ID + G
Sbjct: 352 QD-NGIRPDDVTLVGVLNACAHGGLVDE-GLHHFYSLEKYAITPKIEHYGCVIDLLGRVG 409
Query: 187 CIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKPNRSW 242
+ A + + + N V W ++ +H +G+ A R L P+ W
Sbjct: 410 RLQEAYSIIRTMRM-KPNAVIWGAFLNACKVHSNVELGEIAAAELTR-----LDPDDPW 462
>gi|125526069|gb|EAY74183.1| hypothetical protein OsI_02067 [Oryza sativa Indica Group]
Length = 657
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 94/305 (30%), Positives = 146/305 (47%), Gaps = 36/305 (11%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
L++ C S + G QLH V K GF +H +V L Y S F+ S F + +
Sbjct: 282 LVKACSRHSAVSEGQQLHTVILKNGFDAHAFVQATLIHYYGSCDFIDHSQMQFKLSDKSH 341
Query: 90 LVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALALFRRMAA 128
+ +WN ++ L++ W+ +I GY + SN AL +F M
Sbjct: 342 VASWNALMASLLRRNLVHEARQLFDDMPERDTISWSTLISGYVQSGNSNMALQIFCSMLD 401
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
EP+EIT+ + L A+ +G + + IH Y R D +S LI+ YAKCG I
Sbjct: 402 AG-VEPNEITLASALSAVANSGTLGQARWIHDYIISRSIQLTD-KLSAGLINVYAKCGSI 459
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNRSWRIG-- 245
A +LF ++ W +II A+HG ++E F ++Q +KPN +G
Sbjct: 460 AEAVQLFNHVKDKSISVSPWNSIICNLAIHGYVNMSLELFSQLQSTTNIKPNSITYLGVL 519
Query: 246 ---------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQIT 296
EG + F+ M ++ + P+IKHYGC++D+L RAG LE+AE + +P +
Sbjct: 520 NACCHAGMVAEGKRQFESMRQQYGIQPEIKHYGCMVDLLCRAGYLEEAELLIKTMPMK-A 578
Query: 297 NVVVW 301
+VV W
Sbjct: 579 DVVAW 583
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/341 (21%), Positives = 132/341 (38%), Gaps = 69/341 (20%)
Query: 47 HAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK---- 102
H V + G V V T L Y ++ + + +F+ +P+RN VTWN ++ VK
Sbjct: 166 HGVAVRRGLDGFVIVATNLVHAYGAVSQVPSARSIFELMPDRNTVTWNTMLNCYVKAGMI 225
Query: 103 -----------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
W +IDGY + +AL + M +E+ ++ ++ A
Sbjct: 226 NMAAEVFGVIPERDEVSWLTMIDGYMCADFLLQALRTYVAMVGTVGIRANEVILVGLVKA 285
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC-------------------- 185
++ V Q +H K GF+A V LI Y C
Sbjct: 286 CSRHSAVSEGQQLHTVILKNGFDAHAF-VQATLIHYYGSCDFIDHSQMQFKLSDKSHVAS 344
Query: 186 -----------GCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
+ A +LF+D + ++ +SW+T+ISG+ G A++ F M
Sbjct: 345 WNALMASLLRRNLVHEARQLFDD--MPERDTISWSTLISGYVQSGNSNMALQIFCSMLDA 402
Query: 235 GLKPNR------------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLE 282
G++PN S +G + D ++ L D G LI++ + G +
Sbjct: 403 GVEPNEITLASALSAVANSGTLG-QARWIHDYIISRSIQLTDKLSAG-LINVYAKCGSIA 460
Query: 283 QAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQ 323
+A ++ + + + +V W + L I+ Y + L SQ
Sbjct: 461 EAVQLFNHVKDKSISVSPWNSIICNLAIHGYVNMSLELFSQ 501
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 115/265 (43%), Gaps = 50/265 (18%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYV----SLGFLKDSS 79
F S L LS+ G QLHA+ +K G S+++V +L Y SL +
Sbjct: 12 FLVSSLKSAAARLSH---GEQLHALAAKSGLLTSNLFVRNSLLAFYSRVAPSLAY----- 63
Query: 80 KLFDELPE--RNLVTWNVIITGL---------------------VKWTGIIDGYSRMNRS 116
LFDE+P R+ N++++ L V +T +I SR
Sbjct: 64 HLFDEIPPLLRDATAHNILLSALARAGRLERAQCLLAEMPQRDAVSFTTVISALSRSGHP 123
Query: 117 NEALALFRRMAACEYTEPSEITILAVLPAI-WKNGEVRNCQLIHGYGEKRGFNAFDIHVS 175
ALA+FR M E +P+E+T+ VL A+ +G HG +RG + F I +
Sbjct: 124 ERALAVFRDMLT-EAVQPNEVTLAEVLTAMACDHGAPAPVGAAHGVAVRRGLDGFVIVAT 182
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
N L+ Y + SA +FE + +N V+W T+++ + GM A E F G
Sbjct: 183 N-LVHAYGAVSQVPSARSIFE--LMPDRNTVTWNTMLNCYVKAGMINMAAEVF------G 233
Query: 236 LKPNR---SWRIGEEGLKFFDKMVE 257
+ P R SW +G D +++
Sbjct: 234 VIPERDEVSWLTMIDGYMCADFLLQ 258
>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
[Vitis vinifera]
gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
Length = 618
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 93/291 (31%), Positives = 149/291 (51%), Gaps = 27/291 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ C L LG+ + + + +V +AL MY G L + ++F
Sbjct: 226 DEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFVGSALIGMYGKCGDLSSARRVF 285
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + ++++VTWN +ITG Y++ S+EA+ LF M P +IT++ V
Sbjct: 286 DRMVKKDVVTWNAMITG----------YAQNGVSDEAIILFSGMRE-SGVNPDKITLVGV 334
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + + + Y +RG DI+VS LID YAKCG + A ++FED + +
Sbjct: 335 LSACASIGALDFGKWLDTYASERGLQN-DIYVSTALIDMYAKCGSLDDALRVFED--MPQ 391
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVG--LKPNRSWRIG-----------EEGL 249
KN VSW +IS A HG +E++ F+RM K G ++PN IG +EG
Sbjct: 392 KNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHAGLVDEGR 451
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
+ FD M ++P I+H+ C++D+L RAG + +A + +P + VV+
Sbjct: 452 QLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPDEVVL 502
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/293 (29%), Positives = 145/293 (49%), Gaps = 30/293 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++FTY F+ C L N G H+ K G + +V +L MY G L + ++F
Sbjct: 125 NNFTYPFVFIACANLLVLNHGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVF 184
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ E++LV+WN +I+ GYSRM + +A+ LF M + EP E+T++++
Sbjct: 185 DEISEKDLVSWNSMIS----------GYSRMGYAGDAVGLFGEMRDAGF-EPDEMTLVSI 233
Query: 143 LPAIWKNGEVRNCQLIHGY--GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
L A G++ I G+ + N+F V + LI Y KCG + SA ++F+ +
Sbjct: 234 LGACGDLGDLGLGSWIEGFVVENEMDLNSF---VGSALIGMYGKCGDLSSARRVFD--RM 288
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGL----------K 250
+K++V+W +I+G+A +G+ EA+ F M++ G+ P++ +G K
Sbjct: 289 VKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVGVLSACASIGALDFGK 348
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ D E + DI LID+ + G L+ A V +P + N V W
Sbjct: 349 WLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQK--NEVSWNA 399
>gi|15221226|ref|NP_177580.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169846|sp|Q9CA73.1|PP119_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g74400
gi|12324820|gb|AAG52382.1|AC011765_34 hypothetical protein; 20273-21661 [Arabidopsis thaliana]
gi|332197466|gb|AEE35587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 462
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 158/310 (50%), Gaps = 32/310 (10%)
Query: 13 HSHSPLPPLFDSFTYSFLIRTCVTLSYPNL-GTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
H P DSF+ F I+ +L G Q+HA+ K+GF + + + T+L Y S
Sbjct: 53 HRFRQSPSFVDSFSVLFAIKVSSAQKASSLDGRQIHALVRKLGFNAVIQIQTSLVGFYSS 112
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY 131
+G + + ++FDE PE+ +V WT +I Y+ S EA+ LF+RM A E
Sbjct: 113 VGDVDYARQVFDETPEKQ---------NIVLWTAMISAYTENENSVEAIELFKRMEA-EK 162
Query: 132 TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN-AFDIHVSNCLIDTYAKCGCIFS 190
E + + L A G V+ + I+ KR A D+ + N L++ Y K G
Sbjct: 163 IELDGVIVTVALSACADLGAVQMGEEIYSRSIKRKRRLAMDLTLRNSLLNMYVKSGETEK 222
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG------LKPNRSWRI 244
A KLF+++ RK++ ++T++I G+A++G +E++E F++M+ + + PN I
Sbjct: 223 ARKLFDESM--RKDVTTYTSMIFGYALNGQAQESLELFKKMKTIDQSQDTVITPNDVTFI 280
Query: 245 G-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPS 293
G EEG + F M+ + + P H+GC++D+ R+G L+ A E + +P
Sbjct: 281 GVLMACSHSGLVEEGKRHFKSMIMDYNLKPREAHFGCMVDLFCRSGHLKDAHEFINQMPI 340
Query: 294 QITNVVVWRT 303
+ N V+WRT
Sbjct: 341 K-PNTVIWRT 349
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 93/210 (44%), Gaps = 28/210 (13%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHA--VFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
D + + C L +G ++++ + K + + +L +MYV G + +
Sbjct: 165 LDGVIVTVALSACADLGAVQMGEEIYSRSIKRKRRLAMDLTLRNSLLNMYVKSGETEKAR 224
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE-----P 134
KLFDE +++ T+ T +I GY+ ++ E+L LF++M + ++ P
Sbjct: 225 KLFDESMRKDVTTY----------TSMIFGYALNGQAQESLELFKKMKTIDQSQDTVITP 274
Query: 135 SEITILAVLPAIWKNGEVRNCQ-----LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
+++T + VL A +G V + +I Y K F C++D + + G +
Sbjct: 275 NDVTFIGVLMACSHSGLVEEGKRHFKSMIMDYNLKPREAHF-----GCMVDLFCRSGHLK 329
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
A + + + N V W T++ ++HG
Sbjct: 330 DAHEFINQMPI-KPNTVIWRTLLGACSLHG 358
>gi|224031691|gb|ACN34921.1| unknown [Zea mays]
gi|414879789|tpg|DAA56920.1| TPA: tetratricopeptide-like helical [Zea mays]
Length = 460
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 149/304 (49%), Gaps = 38/304 (12%)
Query: 23 DSFTYSFLIRTCVTLSY--PNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
+ FT+ ++R+ L P +G QLHA +K+G S+V+V +AL D Y +G + ++ +
Sbjct: 40 NEFTFGTVLRSATALRVRAPRVGVQLHACAAKLGLCSNVFVGSALLDHYAKMGAMTEAQR 99
Query: 81 LFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEA 119
D+ E N+V++ +I GL+K W +I GYS+ EA
Sbjct: 100 ALDDTREPNVVSYTALIAGLLKNGMFDEADRLFRRMPERNVVSWNAMIGGYSQAGLGEEA 159
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
+ LF M + P+E T VL ++ G + + IH K D+++ N L+
Sbjct: 160 VNLFLEMCRGGVS-PNESTFPCVLTSVASAGTLGVGRSIHASAIKF-LGKLDVYIGNSLV 217
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
YA+CG + + F+ ++RKN+VSW +I G+A +G G+EA++ + M+ GLKP+
Sbjct: 218 SFYARCGSLEDSVLAFK--KINRKNVVSWNALICGYAQNGKGEEALDAYRMMRATGLKPD 275
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
+G +EG F E + +HY C++D+L RA R ++A
Sbjct: 276 NVTLLGLLFGCNHTGLVDEGYALFKTAEREQPGILKPEHYACVVDLLSRAKRFDEARRFL 335
Query: 289 SGIP 292
+P
Sbjct: 336 EELP 339
>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 620
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 95/290 (32%), Positives = 148/290 (51%), Gaps = 26/290 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DS T L+ C Y LG LH K G S V V + MY+ G ++ +LF
Sbjct: 152 DSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLF 211
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+P + L+TWN +I+ GYS+ + + L LF +M + P T+++V
Sbjct: 212 DEMPVKGLITWNAVIS----------GYSQNGLAYDVLELFEQMKSSGVC-PDPFTLVSV 260
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + G + Q + E GF A ++ +SN LI YA+CG + A +F+ V
Sbjct: 261 LSSCAHLGAKKIGQEVGELVEANGF-APNVFLSNALISMYARCGNLAKARAVFDIMPV-- 317
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS-----------WRIGEEGLKF 251
K+LVSWT +I + MHGMG+ + F+ M K G++P+ + + ++GL+
Sbjct: 318 KSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLEL 377
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F M E ++ P +HY CL+D+L RAGRL++A E +P + + VW
Sbjct: 378 FRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVE-PDGAVW 426
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 149/293 (50%), Gaps = 32/293 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+F++ F++++C +LS P G QLH + G ++ +V TAL MY G ++D+ K+F
Sbjct: 49 DAFSFPFILKSCASLSLPVSGQQLHCHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVF 108
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E P + + V + +I GY+ ++ ++A +FRRM + S +TIL +
Sbjct: 109 EENPHSSQLG--------VCYNALISGYTANSKVSDAAFMFRRMKETGVSVDS-VTILGL 159
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+P + + +HG K G + ++ V N I Y KCG + S +LF++ V
Sbjct: 160 VPLCTVPEYLWLGRSLHGECVKGGTYS-EVAVLNSFITMYMKCGSVESGRRLFDEMPV-- 216
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN--------------RSWRIGEEG 248
K L++W +ISG++ +G+ + +E FE+M+ G+ P+ + +IG+E
Sbjct: 217 KGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQE- 275
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
++VE P++ LI + R G L +A V +P + ++V W
Sbjct: 276 ---VGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMP--VKSLVSW 323
>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 808
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 85/312 (27%), Positives = 153/312 (49%), Gaps = 37/312 (11%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D ++ C LS G +H + ++G +S+V + AL MY G + D+ KL
Sbjct: 302 LDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKL 361
Query: 82 FDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEAL 120
F+ + ++WN +I+G +V W+ +I GY++ + +E L
Sbjct: 362 FNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETL 421
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
ALF M + P E +++V+ A + + +H Y K G ++ + L+D
Sbjct: 422 ALFHEMQLGQ-IRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKV-NVILGTTLLD 479
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN- 239
Y KCGC+ +A ++F ++ K + SW +I G A++G+ + +++ F M+ G+ PN
Sbjct: 480 MYMKCGCVENALEVF--NGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNE 537
Query: 240 ----------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
R + +EG F M+E+ + P++KHYGC++D+L RAG L +AE++
Sbjct: 538 ITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIE 597
Query: 290 GIPSQITNVVVW 301
+P +V W
Sbjct: 598 SMP-MAPDVATW 608
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 95/413 (23%), Positives = 165/413 (39%), Gaps = 109/413 (26%)
Query: 3 VYKQLQQIYIHSHSPLPPLF------------DSFTYSFLIRTCVTLSYPNLGTQLHAVF 50
++ + + YI S+S L D++TY +++ C G ++H
Sbjct: 108 MWNTMMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACAVRLLEFGGKEIHDHV 167
Query: 51 SKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE-------------------------- 84
KVGF S VYV L +MY G ++D+ KLFDE
Sbjct: 168 LKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAK 227
Query: 85 -----LPERNLVTWNVIIT---------------------GLVKWTGIIDGYSRMNRSNE 118
+P+RN+V N +I +V W+ +I GY + E
Sbjct: 228 LIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEE 287
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
AL +F M A E+ +++VL A V+ ++IHG + G ++ +++ N L
Sbjct: 288 ALVMFIEMNA-NGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESY-VNLQNAL 345
Query: 179 IDTYAKCGCIFSASKLFEDT-------------------SVDR----------KNLVSWT 209
I Y+ G I A KLF + SV++ K++VSW+
Sbjct: 346 IHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWS 405
Query: 210 TIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEE 258
+ISG+A H E + F MQ ++P+ + + ++G K+ + +
Sbjct: 406 AVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQG-KWVHAYIRK 464
Query: 259 CEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLIN 311
+ ++ L+D+ + G +E A EV +G+ + V W + L +N
Sbjct: 465 NGLKVNVILGTTLLDMYMKCGCVENALEVFNGMEEK--GVSSWNALIIGLAVN 515
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 129/290 (44%), Gaps = 52/290 (17%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQ---SHVYVNTALGDMYVSLGFLKD 77
L +F + + +TLS L T LH + F S + + + D + + LK
Sbjct: 25 LKSTFNHKPTFKPTITLSI--LETHLHNCHNLKQFNRILSQMILTGFISDTFAASRLLKF 82
Query: 78 SS-----------KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM 126
S+ ++FD + N WN ++ Y + N + +AL L++ M
Sbjct: 83 STDSPFIGLDYSLQIFDRIENSNGFMWNTMMRA----------YIQSNSAEKALLLYKLM 132
Query: 127 AACE-----YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
YT P + AV + E IH + K GF++ D++V N LI+
Sbjct: 133 VKNNVGPDNYTYPLVVQACAVRLLEFGGKE------IHDHVLKVGFDS-DVYVQNTLINM 185
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YA CG + A KLF+++ V + VSW +I++G+ G +EA F++M + + + S
Sbjct: 186 YAVCGNMRDARKLFDESPV--LDSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNS 243
Query: 242 W-----RIGE--EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
++G+ E K F++M E+ D+ + LI E+ G E+A
Sbjct: 244 MIVLLGKMGQVMEAWKLFNEMDEK-----DMVSWSALISGYEQNGMYEEA 288
>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
Length = 614
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 89/292 (30%), Positives = 155/292 (53%), Gaps = 26/292 (8%)
Query: 7 LQQIYIHS---HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNT 63
L+ I ++S H + P D++ + +++ C + G ++H+ K+GF S+ V
Sbjct: 119 LEAIQLYSRMLHESILP--DNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRL 176
Query: 64 ALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALF 123
+ ++Y G L D+ ++F+E+PE +V+ V WT +IDG+ R +N AL F
Sbjct: 177 RIMELYGKCGELGDARRVFEEMPE------DVVAKDTVCWTAMIDGFVRNEETNRALEAF 230
Query: 124 RRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183
R M E P+E TI+ VL A + G + + +H Y K ++ V N LI+ Y+
Sbjct: 231 RGMQG-ENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIE-LNLFVGNALINMYS 288
Query: 184 KCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWR 243
+CG I A +F++ + ++++++ T+ISG +M+G ++A+E F M L+P
Sbjct: 289 RCGSIDEAQTVFDE--MKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTF 346
Query: 244 IG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
+G + G + F M + V P I+HYGC++D+L R GRLE+A
Sbjct: 347 VGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEA 398
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/211 (23%), Positives = 94/211 (44%), Gaps = 17/211 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT ++ C L +G +H+ K + +++V AL +MY G + ++ +F
Sbjct: 241 NEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVF 300
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ +R+++T+N +I+GL S +S +A+ LFR M P+ +T + V
Sbjct: 301 DEMKDRDVITYNTMISGL----------SMNGKSRQAIELFRVMVG-RRLRPTNVTFVGV 349
Query: 143 LPAIWKNGEVR-NCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G V ++ H I C++D + G + A L +
Sbjct: 350 LNACSHGGLVDFGFEIFHSMARDYRVEP-QIEHYGCMVDLLGRVGRLEEAYDLIRTMKMT 408
Query: 202 RKNLVSWTTIISGFAMHG---MGKEAVENFE 229
+++ T++S MH +G++ + E
Sbjct: 409 PDHIM-LGTLLSACKMHKNLELGEQVAKELE 438
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
+T +IDG+ EA+ L+ RM E P + ++L A +R + +H
Sbjct: 105 YTALIDGFVSSGNYLEAIQLYSRMLH-ESILPDNYLMASILKACGSQLALREGREVHSRA 163
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD--RKNLVSWTTIISGFAMHGM 220
K GF++ + V +++ Y KCG + A ++FE+ D K+ V WT +I GF +
Sbjct: 164 LKLGFSSNRL-VRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEE 222
Query: 221 GKEAVENFERMQKVGLKPN 239
A+E F MQ ++PN
Sbjct: 223 TNRALEAFRGMQGENVRPN 241
>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g37570 [Vitis vinifera]
Length = 561
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 97/366 (26%), Positives = 157/366 (42%), Gaps = 97/366 (26%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY------------- 69
D FTY LI+ C + G H + G V+V T+L D+Y
Sbjct: 122 DKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVF 181
Query: 70 ------------------VSLGFLKDSSKLFDELPERNLVTWNVIITGLVK--------- 102
S L ++ KLFDE+PE+N V+WN II+G VK
Sbjct: 182 DEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARK 241
Query: 103 -------------------------------------------WTGIIDGYSRMNRSNEA 119
W+ +I GY + + NEA
Sbjct: 242 MFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALISGYVQNGQPNEA 301
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
+ +F M + +P E +++++ A + G + + + Y K + HV LI
Sbjct: 302 VKIFLEMCS-RNVKPDEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALI 360
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D AKCG + A+KLFE+ + +++L+S+ +++ G ++HG G +AV F RM GL P+
Sbjct: 361 DMNAKCGSMDRATKLFEE--MPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPD 418
Query: 240 ---------RSWRIG--EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
R G +EG +F+ M + ++P HY C++D+L RAGRL++A E+
Sbjct: 419 DVAFTVILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELL 478
Query: 289 SGIPSQ 294
+P +
Sbjct: 479 KSMPVE 484
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 129/297 (43%), Gaps = 40/297 (13%)
Query: 18 LPPL--FDSFT-YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF 74
LP L FD+ + S L++ C T S Q+HA + G ++ + + SL
Sbjct: 16 LPTLRSFDTTSSISTLLKACTTTSTLE---QVHARIIRKGLHQDHFIISQFLTLCNSLSN 72
Query: 75 LKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134
++ +F+ + + V WN I GYS + ++LF RM + P
Sbjct: 73 FSYTTSVFNGVSSPSTVLWNTY----------IKGYSENYSVSLTVSLFIRMKRSDAV-P 121
Query: 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
+ T +++ A K V+ HG + G D+ V LID Y KCG I A K+
Sbjct: 122 DKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGG-DVFVMTSLIDLYGKCGEILCARKV 180
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW--------RIGE 246
F++ + +N+VSWT +I+G+A EA + F+ M + K SW + G+
Sbjct: 181 FDE--MGERNVVSWTAMIAGYASFSDLVEARKLFDEMPE---KNAVSWNAIISGYVKCGD 235
Query: 247 --EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
K FD+M ++ + +ID ++G + A V P + +VV W
Sbjct: 236 LRSARKMFDEMPHR-----NVVSFTTMIDGYAKSGDMASARFVFEEAPER--DVVAW 285
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 80/198 (40%), Gaps = 15/198 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSH-VYVNTALGDMYVSLGFLKDSSKL 81
D F L+ C + L + K H +V AL DM G + ++KL
Sbjct: 316 DEFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKL 375
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+E+P+R+L+++ ++ GL S +A++LF RM E P ++
Sbjct: 376 FEEMPKRDLISYCSMMQGL----------SIHGCGPQAVSLFSRMLN-EGLTPDDVAFTV 424
Query: 142 VLPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+L A + G V C H + C++D + G + A +L + V
Sbjct: 425 ILTACSRAGLVDEGCYYFESMKTDYSIVPSPDHYA-CMVDLLGRAGRLKEAYELLKSMPV 483
Query: 201 DRKNLVSWTTIISGFAMH 218
+ + +W ++ +H
Sbjct: 484 E-PHAGAWGALLGACKLH 500
>gi|242082329|ref|XP_002445933.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
gi|241942283|gb|EES15428.1| hypothetical protein SORBIDRAFT_07g028280 [Sorghum bicolor]
Length = 498
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 82/255 (32%), Positives = 136/255 (53%), Gaps = 39/255 (15%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYS 111
G L + K+FDE+P RN+V+WN ++ G +V WT +I GY+
Sbjct: 238 GLLPLARKMFDEMPIRNIVSWNAMLRGYAMNGEMDVARELFDVMPEKDVVSWTCMISGYA 297
Query: 112 RMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF---N 168
+ R + L LFR M + P+E+T+++VL A + + H + +K N
Sbjct: 298 QAGRYAQTLELFRTMQSHGDIRPNEVTMVSVLSACAHLTALEEGRWAHVFIDKHKMVLDN 357
Query: 169 AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENF 228
F++ + LID YAKCG A+K+F S+D+KN+ +W +I+G A++ + ++ F
Sbjct: 358 EFNLGAA--LIDMYAKCGRTDLATKIFH--SLDQKNVSAWNALITGLAVNSDARRCIDVF 413
Query: 229 ERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILER 277
E+M+ KP+ + +EG ++F M C V P++KHYGC++D+L R
Sbjct: 414 EQMKMSEEKPDDITFVSVLTACAHAGLVDEGRQYFQSMSSACGVQPELKHYGCMVDLLGR 473
Query: 278 AGRLEQAEEVASGIP 292
AG L++AEE+ G+P
Sbjct: 474 AGLLDEAEELIRGMP 488
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/273 (20%), Positives = 108/273 (39%), Gaps = 59/273 (21%)
Query: 21 LFDSFTYSFLIRTCVTLS-YPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
L D FT+ L+++ LS +P G Q++A ++ GF + +V +L MY +
Sbjct: 89 LPDHFTFPPLVKSASRLSSFPRTGAQVYAQAARRGFLADTFVVNSLLAMYAAFRDTASMR 148
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
+F+ E + +V W ++ GY+
Sbjct: 149 AVFESCAE---------VADVVSWNTVVFGYA---------------------------- 171
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
K GE+ N + + R ++ + ++ YA G + A ++F+
Sbjct: 172 --------KCGEIGNARRVFDEMPHRNGVSWSV-----MVGAYAAAGELDVAREMFDRMP 218
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKF---FDKMV 256
+N+++W +++GF HG+ A + F+ M ++ SW G D
Sbjct: 219 AIGRNIITWNLMVTGFGRHGLLPLARKMFDEMP---IRNIVSWNAMLRGYAMNGEMDVAR 275
Query: 257 EECEVLP--DIKHYGCLIDILERAGRLEQAEEV 287
E +V+P D+ + C+I +AGR Q E+
Sbjct: 276 ELFDVMPEKDVVSWTCMISGYAQAGRYAQTLEL 308
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 80/199 (40%), Gaps = 25/199 (12%)
Query: 4 YKQLQQIY--IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSK--VGFQSHV 59
Y Q +++ + SH + P + T ++ C L+ G H K + +
Sbjct: 302 YAQTLELFRTMQSHGDIRP--NEVTMVSVLSACAHLTALEEGRWAHVFIDKHKMVLDNEF 359
Query: 60 YVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGI---IDGYSRMNRS 116
+ AL DMY G ++K+F L ++N+ WN +ITGL + ID + +M S
Sbjct: 360 NLGAALIDMYAKCGRTDLATKIFHSLDQKNVSAWNALITGLAVNSDARRCIDVFEQMKMS 419
Query: 117 NEALALFRRMAACEYTEPSEITILAVLPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVS 175
E +P +IT ++VL A G V Q G ++
Sbjct: 420 EE--------------KPDDITFVSVLTACAHAGLVDEGRQYFQSMSSACGVQP-ELKHY 464
Query: 176 NCLIDTYAKCGCIFSASKL 194
C++D + G + A +L
Sbjct: 465 GCMVDLLGRAGLLDEAEEL 483
>gi|226501952|ref|NP_001151797.1| tetratricopeptide-like helical [Zea mays]
gi|195649749|gb|ACG44342.1| tetratricopeptide-like helical [Zea mays]
Length = 460
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 149/304 (49%), Gaps = 38/304 (12%)
Query: 23 DSFTYSFLIRTCVTLSY--PNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
+ FT+ ++R+ L P +G QLHA +K+G S+V+V +AL D Y +G + ++ +
Sbjct: 40 NEFTFGTVLRSATALRVRAPRVGVQLHACAAKLGLCSNVFVGSALLDHYAKMGAMTEAQR 99
Query: 81 LFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEA 119
D+ E N+V++ +I GL+K W +I GYS+ EA
Sbjct: 100 ALDDTREPNVVSYTALIAGLLKNGMFDEADRLFRRMPERNVVSWNAMIGGYSQAGLGEEA 159
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
+ LF M + P+E T VL ++ G + + IH K D+++ N L+
Sbjct: 160 VNLFLEMCRGGVS-PNESTFPCVLTSVASAGTLGVGRSIHASAIKF-LGKLDVYIGNSLV 217
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
YA+CG + + F+ ++RKN+VSW +I G+A +G G+EA++ + M+ GLKP+
Sbjct: 218 SFYARCGSLEDSVLAFK--KINRKNVVSWNALICGYAQNGKGEEALDAYRMMRATGLKPD 275
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
+G +EG F E + +HY C++D+L RA R ++A
Sbjct: 276 NLTLLGLLFGCNHTGLVDEGYALFKTAEREQPGILKPEHYACVVDLLSRAKRFDEARRFL 335
Query: 289 SGIP 292
+P
Sbjct: 336 EELP 339
>gi|242065790|ref|XP_002454184.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
gi|241934015|gb|EES07160.1| hypothetical protein SORBIDRAFT_04g026300 [Sorghum bicolor]
Length = 530
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 97/314 (30%), Positives = 155/314 (49%), Gaps = 38/314 (12%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P + F Y ++R + + +H+ K GF H + T++ D Y G + D+
Sbjct: 116 PAPNQFVYPLVLRAASGVGV-GIVKSIHSHACKSGFCGHDIIRTSVLDGYSRHGMMADAR 174
Query: 80 KLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNE 118
KLFD L ERN+V+W +++G + W II G S+ E
Sbjct: 175 KLFDGLTERNVVSWTALVSGYARAGKVGDAIVLFERMPERDVAAWNAIIAGCSQNGLFVE 234
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
A+ +F RM + P+ T+ VL A G ++ +LIH Y R F V N L
Sbjct: 235 AVGIFGRMVGAGF-RPNATTVSCVLSACGHLGMLKIGKLIHCYA-WRTCVGFGSSVLNGL 292
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
ID Y KCG + A +F++ S DR +L +W ++I+ A+HG K A+ F M+ G++P
Sbjct: 293 IDMYGKCGNLEGARWIFDEVS-DR-SLTTWNSLINCLALHGHSKCAISVFNEMRGEGVEP 350
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ +G +EG+++F+ M E + P+I+HYGC+ID+L RAGR + A V
Sbjct: 351 DVVTFVGLLNACTHGGFVDEGIRYFELMQHEHGIEPEIEHYGCIIDLLGRAGRFQDALNV 410
Query: 288 ASGIPSQITNVVVW 301
S + + + V+W
Sbjct: 411 ISDMRIE-ADEVMW 423
>gi|357447289|ref|XP_003593920.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482968|gb|AES64171.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 801
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 142/273 (52%), Gaps = 26/273 (9%)
Query: 42 LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV 101
LG LH K+GF ++ V TAL DMY G + + K+FD + E+++V WN +I
Sbjct: 229 LGKSLHGYCIKIGFCCNLNVVTALIDMYAKTGCIYLARKVFDGVVEKDVVLWNCLI---- 284
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
Y+R EA+AL + M E +P+ T++ +L +G ++ + +
Sbjct: 285 ------KNYARSCLVEEAVALLQSMRQ-EGVKPNSSTLVGLLSVYSASGSMQGVRYVTSL 337
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
E+ D+ + L+D YAKCG + A ++FE ++ K++ SWT +ISG +HG
Sbjct: 338 IEEEKLE-LDVILGTALVDVYAKCGFLDEAMEIFE--RMENKDVKSWTAVISGHGIHGQA 394
Query: 222 KEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGC 270
A+ F RM+ G +PN + EG++FF +MV+E P ++HYGC
Sbjct: 395 INAISLFNRMENEGFRPNEITFLAILTACSHGGLVTEGVEFFKRMVQEHGFSPWVEHYGC 454
Query: 271 LIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
LID+L RAG L +A E+ +P + + WRT
Sbjct: 455 LIDLLGRAGMLHEAFELIKSLPIK-GDATSWRT 486
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 139/277 (50%), Gaps = 25/277 (9%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D F++ +++ C G +H + K G + V +N + Y G + D+ K+
Sbjct: 107 LDPFSFIAVMKACGRSFEVGFGRGVHGIVVKSGNRFFVDLNNTILQFYCVCGRIDDARKV 166
Query: 82 FDELPERN-LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
FDE PERN LV+WN+++ G V ++ YS + LF + C S T L
Sbjct: 167 FDECPERNDLVSWNILMGGCV----LVSDYSFV------FDLFLKR-GCSGIRASVATTL 215
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
++L A G + +HGY K GF +++V LID YAK GCI+ A K+F+ V
Sbjct: 216 SLLSAAGDIGSFVLGKSLHGYCIKIGF-CCNLNVVTALIDMYAKTGCIYLARKVFD--GV 272
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG----------EEGLK 250
K++V W +I +A + +EAV + M++ G+KPN S +G +G++
Sbjct: 273 VEKDVVLWNCLIKNYARSCLVEEAVALLQSMRQEGVKPNSSTLVGLLSVYSASGSMQGVR 332
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ ++EE ++ D+ L+D+ + G L++A E+
Sbjct: 333 YVTSLIEEEKLELDVILGTALVDVYAKCGFLDEAMEI 369
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMA-ACEYTEPSEITILAVLPAIWKNGEVRNCQLI 158
L + ++ GYS N SN+AL +F ++ + +P + +AV+ A ++ EV + +
Sbjct: 74 LFMYNTMLRGYSVSNSSNKALPIFNKLRNSGNGLDP--FSFIAVMKACGRSFEVGFGRGV 131
Query: 159 HGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISG 214
HG K G N F + ++N ++ Y CG I A K+F D +R +LVSW ++ G
Sbjct: 132 HGIVVKSG-NRFFVDLNNTILQFYCVCGRIDDARKVF-DECPERNDLVSWNILMGG 185
>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g66520-like [Glycine max]
Length = 622
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 96/290 (33%), Positives = 151/290 (52%), Gaps = 38/290 (13%)
Query: 44 TQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG---- 99
++HAV KVG +++V+V AL MY G + +S K+F +R+L +WN +I
Sbjct: 137 VRIHAV--KVGLENNVFVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVGS 194
Query: 100 -----------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+V W+ II GY ++ EAL F +M +P+E T+++
Sbjct: 195 GNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQIG-PKPNEYTLVSA 253
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + + IH Y K G + + +ID YAKCG I SAS++F + V +
Sbjct: 254 LAACSNLVALDQGKWIHAYIGK-GEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQ 312
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
K + W +I GFAMHGM EA+ FE+M+ + PN+ I EEG +
Sbjct: 313 KVWL-WNAMIGGFAMHGMPNEAINVFEQMKVEKISPNKVTFIALLNACSHGYMVEEGKLY 371
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F MV + + P+I+HYGC++D+L R+G L++AE++ S +P +V +W
Sbjct: 372 FRLMVSDYAITPEIEHYGCMVDLLSRSGLLKEAEDMISSMP-MAPDVAIW 420
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 121/308 (39%), Gaps = 56/308 (18%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSH-VYVNTALGDMYVSLGFLKDSSK 80
F S YS L+ + Q HA SH V N L + L + K
Sbjct: 11 FHSDHYSRLVSLIDSCKSMQQIKQTHAQLITTALISHPVSANKLLK--LAACASLSYAHK 68
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRS-NEALALFRRMAACEYTEPSEITI 139
LFD++P+ +L +N +I +S S + +L +FR + P+ +
Sbjct: 69 LFDQIPQPDLFIYNTMIK----------AHSLSPHSCHNSLIVFRSLTQDLGLFPNRYSF 118
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+ A V+ + + + K G ++ V N LI Y K G + + K+F+ +
Sbjct: 119 VFAFSACGNGLGVQEGEQVRIHAVKVGLEN-NVFVVNALIGMYGKWGLVGESQKVFQ-WA 176
Query: 200 VDR------------------------------KNLVSWTTIISGFAMHGMGKEAVENFE 229
VDR +++VSW+TII+G+ G EA++ F
Sbjct: 177 VDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRERDVVSWSTIIAGYVQVGCFMEALDFFH 236
Query: 230 RMQKVGLKPNR----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
+M ++G KPN S + + K+ + + E+ + + +ID+ + G
Sbjct: 237 KMLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYAKCG 296
Query: 280 RLEQAEEV 287
+E A V
Sbjct: 297 EIESASRV 304
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 114/288 (39%), Gaps = 65/288 (22%)
Query: 11 YIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV 70
+ H + P + +T + C L + G +HA K + + + ++ DMY
Sbjct: 234 FFHKMLQIGPKPNEYTLVSALAACSNLVALDQGKWIHAYIGKGEIKMNERLLASIIDMYA 293
Query: 71 SLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE 130
G ++ +S++F E + V W W +I G++ NEA+ +F +M E
Sbjct: 294 KCGEIESASRVFFEHKVKQKV-W--------LWNAMIGGFAMHGMPNEAINVFEQMKV-E 343
Query: 131 YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN-----------CLI 179
P+++T +A+L A C HGY + G F + VS+ C++
Sbjct: 344 KISPNKVTFIALLNA---------CS--HGYMVEEGKLYFRLMVSDYAITPEIEHYGCMV 392
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D ++ G + A ++++S + A+ G A ++ M+
Sbjct: 393 DLLSRSGLLKEA-----------EDMISSMPMAPDVAIWGALLNACRIYKDME------- 434
Query: 240 RSWRIGEEGLKFFDKMVEECEVLPDIKHYGC---LIDILERAGRLEQA 284
R +RIG + M D H GC L +I +GR +A
Sbjct: 435 RGYRIG----RIIKGM--------DPNHIGCHVLLSNIYSTSGRWNEA 470
>gi|125564403|gb|EAZ09783.1| hypothetical protein OsI_32071 [Oryza sativa Indica Group]
Length = 628
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 87/302 (28%), Positives = 150/302 (49%), Gaps = 35/302 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T L+ C L P+ G +H V + G+ VN +L Y L + ++F
Sbjct: 205 DDATLCILVDACAELPDPSTGFAIHKVVVQSGWNGIPEVNNSLISFYTKFSLLDCAVQIF 264
Query: 83 DELPERNLVTWNVII---------------------TGLVKWTGIIDGYSRMNRSNEALA 121
+ + R +WN +I T ++ WT +I G++R ++EALA
Sbjct: 265 ESMKTRTTASWNSLIDAHARFGYIEQAALLFESAPETNIISWTAMIGGFARNGLTSEALA 324
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
F +M EY +P + T AVL A + + +++H + GF ++ ++V+N L+D
Sbjct: 325 HFVKMLTQEYIQPDDFTFGAVLHACASAPCLASGRMVHSCAFQGGFASY-LYVANNLVDM 383
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG + A+ +F+ ++ +K+LVSW T++ GFA++G+ KEA+E +E M + P+
Sbjct: 384 YAKCGDVEGANNVFD--AIHQKDLVSWNTMLFGFAINGLPKEALEVYEIMTYHNVSPDEV 441
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
G E+G FF+ M+ V P +H C++D+ R+G + +A E+
Sbjct: 442 TFTGLLTACSHSGLLEQGRAFFESMMSVHGVQPKPEHLSCVLDMYARSGNIAKAIEMMEQ 501
Query: 291 IP 292
P
Sbjct: 502 YP 503
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 33/199 (16%)
Query: 5 KQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTA 64
K L Q YI D FT+ ++ C + G +H+ + GF S++YV
Sbjct: 328 KMLTQEYIQP--------DDFTFGAVLHACASAPCLASGRMVHSCAFQGGFASYLYVANN 379
Query: 65 LGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFR 124
L DMY G ++ ++ +FD + +++LV+WN ++ G I+G + EAL ++
Sbjct: 380 LVDMYAKCGDVEGANNVFDAIHQKDLVSWNTMLFGFA-----INGLPK-----EALEVYE 429
Query: 125 RMAACEYTEPSEITILAVLPAIWKNGEVRNCQL-------IHGYGEKRGFNAFDIHVSNC 177
M P E+T +L A +G + + +HG K H+S C
Sbjct: 430 IMTY-HNVSPDEVTFTGLLTACSHSGLLEQGRAFFESMMSVHGVQPKPE------HLS-C 481
Query: 178 LIDTYAKCGCIFSASKLFE 196
++D YA+ G I A ++ E
Sbjct: 482 VLDMYARSGNIAKAIEMME 500
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/318 (25%), Positives = 125/318 (39%), Gaps = 77/318 (24%)
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGL-------------------- 100
V AL MY D+++ F E+PERN ++W ++
Sbjct: 111 VGNALVSMYAKCARAADAARAFREMPERNALSWCSLLHAFVVSGHMELAHELFDEMPSKS 170
Query: 101 -VKWTGIIDGYSRMNRSNEALALFRRM-----------------AACEYTEPSEITILAV 142
V W ++ G+SR + + LALF +M A E +PS T A+
Sbjct: 171 NVAWNTLLMGHSRSGNAKQCLALFNQMWMSGLTCDDATLCILVDACAELPDPS--TGFAI 228
Query: 143 LPAIWKNG-----EVRNCQLIHGYGEKRGFNAFDIHVS-------------NCLIDTYAK 184
+ ++G EV N LI Y + F+ D V N LID +A+
Sbjct: 229 HKVVVQSGWNGIPEVNN-SLISFYTK---FSLLDCAVQIFESMKTRTTASWNSLIDAHAR 284
Query: 185 CGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM-QKVGLKPNR--- 240
G I A+ LFE S N++SWT +I GFA +G+ EA+ +F +M + ++P+
Sbjct: 285 FGYIEQAALLFE--SAPETNIISWTAMIGGFARNGLTSEALAHFVKMLTQEYIQPDDFTF 342
Query: 241 ---SWRIGEEGLKFFDKMVEECEVLPDIKHY----GCLIDILERAGRLEQAEEVASGIPS 293
+MV C Y L+D+ + G +E A V I
Sbjct: 343 GAVLHACASAPCLASGRMVHSCAFQGGFASYLYVANNLVDMYAKCGDVEGANNVFDAIHQ 402
Query: 294 QITNVVVWRTGFLRLLIN 311
+ ++V W T IN
Sbjct: 403 K--DLVSWNTMLFGFAIN 418
>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Brachypodium distachyon]
Length = 808
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 149/282 (52%), Gaps = 26/282 (9%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
+R C LS LG QLHA+ +K G + + +L MY G + ++ LFD++
Sbjct: 342 LRACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQM----- 396
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
++ V ++ ++ GY + +++EA +FR+M AC +P T+++++PA
Sbjct: 397 -----VVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACN-VQPDVATMVSLIPACSHLA 450
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
+++ + HG RG A + + N LID YAKCG I + ++F+ + +++VSW T
Sbjct: 451 ALQHGKCGHGSVIVRGI-ASETSICNALIDMYAKCGRIDLSRQIFD--VMPARDIVSWNT 507
Query: 211 IISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEEC 259
+I+G+ +HG+GKEA F M+ +P+ I EG ++F M +
Sbjct: 508 MIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKY 567
Query: 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ P ++HY ++D+L R G L++A + G+P + +V VW
Sbjct: 568 GITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLK-ADVRVW 608
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 112/221 (50%), Gaps = 19/221 (8%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P +++T+ F+++ C L +H ++ G + ++V+TAL D+Y + ++
Sbjct: 125 PQPNNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAA 184
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
+F +P R++V WN ++ GY+ + ++ +A M + P+ T+
Sbjct: 185 TVFRRMPARDVVAWNAMLA----------GYALHGKYSDTIACLLLMQ--DDHAPNASTL 232
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD----IHVSNCLIDTYAKCGCIFSASKLF 195
+A+LP + ++G + + +H Y R + D + V L+D YAKCG + AS++F
Sbjct: 233 VALLPLLAQHGALSQGRAVHAY-SVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVF 291
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
E +V +N V+W+ ++ GF + G EA F+ M GL
Sbjct: 292 EAMAV--RNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGL 330
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 114/288 (39%), Gaps = 48/288 (16%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
F V++++Q + D T LI C L+ G H G S
Sbjct: 421 FRVFRKMQACNVQP--------DVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETS 472
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
+ AL DMY G + S ++FD +P R++V+WN +I GY EA
Sbjct: 473 ICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIA----------GYGIHGLGKEAT 522
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQL-IHGYGEKRGFNAFDIHVSNCLI 179
ALF M + EP ++T + ++ A +G V + H K G H ++
Sbjct: 523 ALFLDMKH-QACEPDDVTFICLISACSHSGLVTEGKRWFHMMAHKYGITPRMEHYIG-MV 580
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D A+ G + A + + + + ++ W ++ +H +N + ++V +
Sbjct: 581 DLLARGGFLDEAYQFIQGMPL-KADVRVWGALLGACRVH-------KNIDLGKQVS---S 629
Query: 240 RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
++G EG F VL L +I AGR ++A EV
Sbjct: 630 MIQQLGPEGTGNF--------VL--------LSNIFSAAGRFDEAAEV 661
>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 786
Score = 144 bits (362), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 100/330 (30%), Positives = 155/330 (46%), Gaps = 60/330 (18%)
Query: 16 SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQ-SHVYVN------------ 62
S L P D FT + ++ C L +G Q+H+ GF S + +N
Sbjct: 273 SMLSP--DRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGV 330
Query: 63 --------------------TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
TAL D Y+ LG + ++ +FD L +R++V W
Sbjct: 331 ETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAW--------- 381
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
T +I GY + EA+ LFR M E P+ T+ A+L + + + IHG
Sbjct: 382 -TAMIVGYEQHGLYGEAINLFRSMVG-EEQRPNSYTLAAMLSVASSLASLGHGKQIHGSA 439
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
K G + + VSN LI YAK G I SAS+ F+ +R + VSWT++I A HG +
Sbjct: 440 VKSG-EIYSVSVSNALITMYAKAGSITSASRAFDLIRCER-DTVSWTSMIIALAQHGHAE 497
Query: 223 EAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCL 271
EA+E FE M GL+P+ +G +G ++FD M + +++P + HY C+
Sbjct: 498 EALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACM 557
Query: 272 IDILERAGRLEQAEEVASGIPSQITNVVVW 301
+D+ RAG L++A+E +P + +VV W
Sbjct: 558 VDLFGRAGLLQEAQEFIEKMPIE-PDVVTW 586
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 113/264 (42%), Gaps = 33/264 (12%)
Query: 30 LIRTCVTLSYPNLGTQL-HAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPER 88
L++ V S QL H K G VY+ L ++Y G+ + KLFDE+P R
Sbjct: 19 LLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLR 78
Query: 89 NLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALALFRRMA 127
+WN +++ K WT +I GY + + ++A+ + M
Sbjct: 79 TAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMM 138
Query: 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC 187
E EPS+ T+ VL ++ + + +H + K G ++ VSN L++ YAKCG
Sbjct: 139 R-EGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRG-NVSVSNSLLNMYAKCGD 196
Query: 188 IFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGE- 246
A +F+ V K++ SW +I+ G A+ FE+M + + S G
Sbjct: 197 PMMAKVVFDRMVV--KDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYN 254
Query: 247 ------EGLKFFDKMVEECEVLPD 264
L F KM+ + + PD
Sbjct: 255 QRGYDLRALDMFSKMLRDSMLSPD 278
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 109/267 (40%), Gaps = 53/267 (19%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
FT + ++ + G ++H+ K+G + +V V+ +L +MY G + +FD
Sbjct: 147 FTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDR 206
Query: 85 LPERNLVTWNVIIT---------------------GLVKWTGIIDGYSRMNRSNEALALF 123
+ +++ +WN +I +V W +I GY++ AL +F
Sbjct: 207 MVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMF 266
Query: 124 RRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183
+M P T+ +VL A ++ + IH + GF+ I V N LI Y+
Sbjct: 267 SKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGI-VLNALISMYS 325
Query: 184 KCGCIFSASKLFED-------------------------------TSVDRKNLVSWTTII 212
+CG + +A +L E S+ +++V+WT +I
Sbjct: 326 RCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMI 385
Query: 213 SGFAMHGMGKEAVENFERMQKVGLKPN 239
G+ HG+ EA+ F M +PN
Sbjct: 386 VGYEQHGLYGEAINLFRSMVGEEQRPN 412
>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Cucumis sativus]
Length = 681
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 153/295 (51%), Gaps = 30/295 (10%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P DSF+++ LI LS VF ++ ++ V N A+ + Y+ G +
Sbjct: 207 PEKDSFSWTILIDG---LSKSGKLEAARDVFDRMPIRNSVSWN-AMINGYMKAGDSNTAK 262
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
+LFD++PER+LVTWN +ITG Y R + +AL LF M E P+ TI
Sbjct: 263 ELFDQMPERSLVTWNSMITG----------YERNKQFTKALKLFEVMLR-EDISPNYTTI 311
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
L + A + + +H Y K GF D + LI+ Y+KCG + SA ++F S
Sbjct: 312 LGAVSAASGMVSLGTGRWVHSYIVKSGFKT-DGVLGTLLIEMYSKCGSVKSALRVFR--S 368
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
+ +K L WT++I G MHG+ ++ +E F+ M + GLKP+ IG E+
Sbjct: 369 IPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDA 428
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++F M + + P I+HYGCLID+L RAG LE+A++ +P + N V+W +
Sbjct: 429 HRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIK-ANKVIWTS 482
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 95/317 (29%), Positives = 146/317 (46%), Gaps = 62/317 (19%)
Query: 13 HSHSP-LPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
HS P LPP F ++ C T N QLHA+ K +H V++ L +Y
Sbjct: 8 HSLQPFLPP-----NLHFPLQNCGTEREAN---QLHALSIKTASLNHPSVSSRLLALYAD 59
Query: 72 --LGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC 129
+ L+ + LFD + E LV+WN++I Y RSN+A+ALF ++ C
Sbjct: 60 PRINNLQYAHSLFDWIQEPTLVSWNLLIKC----------YIENQRSNDAIALFCKL-LC 108
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
++ P T+ VL + G ++ + IHG K GF D V + L+ Y+KCG I
Sbjct: 109 DFV-PDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGF-GVDKFVLSSLVSMYSKCGEIE 166
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGL 249
K+F+ ++ K++VSW ++I G+A G + A+E FE M + K + SW I
Sbjct: 167 LCRKVFD--RMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPE---KDSFSWTI----- 216
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLL 309
LID L ++G+LE A +V +P I N V W +
Sbjct: 217 ---------------------LIDGLSKSGKLEAARDVFDRMP--IRNSVSWNA-----M 248
Query: 310 INSYFFSPITLNSQRLF 326
IN Y + + ++ LF
Sbjct: 249 INGYMKAGDSNTAKELF 265
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 110/226 (48%), Gaps = 28/226 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DSFT +++ C L G Q+H + K+GF +V ++L MY G ++ K+F
Sbjct: 113 DSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVF 172
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + ++++V+WN +IDGY+R AL +F M E + +
Sbjct: 173 DRMEDKDVVSWN----------SLIDGYARCGEIELALEMFEEMP-----EKDSFSWTIL 217
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS---NCLIDTYAKCGCIFSASKLFEDTS 199
+ + K+G++ + + F+ I S N +I+ Y K G +A +LF+
Sbjct: 218 IDGLSKSGKLEAARDV--------FDRMPIRNSVSWNAMINGYMKAGDSNTAKELFD--Q 267
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG 245
+ ++LV+W ++I+G+ + +A++ FE M + + PN + +G
Sbjct: 268 MPERSLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILG 313
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 85/194 (43%), Gaps = 25/194 (12%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G +H+ K GF++ + T L +MY G +K + ++F +P++ L W +I GL
Sbjct: 327 GRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGL-G 385
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQ-----L 157
G+++ + L LF M +P IT + VL A G + +
Sbjct: 386 MHGLVE---------QTLELFDEMCRTGL-KPHAITFIGVLNACSHAGFAEDAHRYFKMM 435
Query: 158 IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAM 217
+ YG K + CLID + G + A E + + N V WT+++SG
Sbjct: 436 TYDYGIKPSIEHY-----GCLIDVLCRAGHLEEAKDTIERMPI-KANKVIWTSLLSGSRK 489
Query: 218 HG---MGKEAVENF 228
HG MG+ A ++
Sbjct: 490 HGNIRMGEYAAQHL 503
>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Vitis vinifera]
Length = 735
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 145/290 (50%), Gaps = 25/290 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D ++ C +S ++ +H K GF+ + V L D Y G L S ++F
Sbjct: 260 DPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVF 319
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + ER++++WN II Y++ S E++ +F RM + +T+ AV
Sbjct: 320 DGMAERDVISWNSIIAV----------YAQNGMSTESMEIFHRMVKDGEINYNAVTLSAV 369
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A +G R + IH K G + ++ V +ID Y KCG + A K F+ +
Sbjct: 370 LLACAHSGSQRLGKCIHDQVIKMGLES-NVFVGTSIIDMYCKCGKVEMARKAFD--RMRE 426
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN+ SW+ +++G+ MHG KEA+E F M G+KPN + EEG +
Sbjct: 427 KNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHW 486
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F M E +V P ++HYGC++D+L RAG L++A ++ G+ + + VVW
Sbjct: 487 FKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLR-PDFVVW 535
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 117/217 (53%), Gaps = 20/217 (9%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T+ I++C L + G Q H GF+ ++V++AL DMY G L+D+ LFDE+
Sbjct: 154 TFPCAIKSCSALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEI 213
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE-------IT 138
RN+V+ WT +I GY + + ++ AL LF+ E + I
Sbjct: 214 SHRNIVS----------WTSMITGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIA 263
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+++VL A + E + +HG+ KRGF D+ V N L+D YAKCG + + ++F+
Sbjct: 264 MVSVLSACSRVSEKSITEGVHGFLIKRGFEG-DLGVENTLMDAYAKCGELGVSRRVFDGM 322
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
+ ++++SW +II+ +A +GM E++E F RM K G
Sbjct: 323 A--ERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDG 357
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 90/202 (44%), Gaps = 22/202 (10%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
+++ T S ++ C LG +H K+G +S+V+V T++ DMY G ++ + K
Sbjct: 361 YNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKA 420
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + E+N+ +W+ ++ GY + EAL +F M +P+ IT ++
Sbjct: 421 FDRMREKNVKSWSAMVA----------GYGMHGHAKEALEVFYEMNMAG-VKPNYITFVS 469
Query: 142 VLPAIWKNGEVRNC-----QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
VL A G + + H + + G + C++D + G + A L +
Sbjct: 470 VLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHY-----GCMVDLLGRAGYLKEAFDLIK 524
Query: 197 DTSVDRKNLVSWTTIISGFAMH 218
+ R + V W ++ MH
Sbjct: 525 GMKL-RPDFVVWGALLGACRMH 545
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 98 TGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY-----TEPSEITILAVLPAIWKNGEV 152
T + W +I +R S EAL F M T P I + L + +
Sbjct: 115 TNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQA 174
Query: 153 RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTII 212
LI G+ D+ VS+ L+D Y+KCG + A LF++ S +N+VSWT++I
Sbjct: 175 HQQALIFGFEP-------DLFVSSALVDMYSKCGELRDARTLFDEIS--HRNIVSWTSMI 225
Query: 213 SGF 215
+G+
Sbjct: 226 TGY 228
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 33/130 (25%)
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEEC 259
VD+ N+ SW ++I+ A G EA+ F M+K+ LKPNRS F ++ C
Sbjct: 112 VDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRS---------TFPCAIKSC 162
Query: 260 EVL-------------------PDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
L PD+ L+D+ + G L A + I + N+V
Sbjct: 163 SALLDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHR--NIVS 220
Query: 301 WR---TGFLR 307
W TG+++
Sbjct: 221 WTSMITGYVQ 230
>gi|414864686|tpg|DAA43243.1| TPA: hypothetical protein ZEAMMB73_488594 [Zea mays]
Length = 484
Score = 144 bits (362), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 145/281 (51%), Gaps = 25/281 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++ T L+ C G +HA + F HV + TAL +MY ++G ++ S K+F
Sbjct: 11 EAVTAINLLAACGQTESSLYGRSVHAYVVRRHFLPHVVLETALLEMYGNVGKVESSEKIF 70
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++ E+ +VTWN +I Y M EA+ALF + + P T+ V
Sbjct: 71 GQMTEKTVVTWN----------NMIAAYIYMEMYQEAIALFLELLN-QPLYPDYFTMTTV 119
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+PA G +R C+ +H Y K G+ + + N ++ YA+CG I ++ ++F+ +
Sbjct: 120 VPAFVLLGSLRQCRQMHSYIIKLGYGDSTL-IMNAVMHMYARCGDIVASREIFD--KMPG 176
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
K+++SW TII G+A+HG GK A+E F+ M+ G++PN S + EG K
Sbjct: 177 KDVISWNTIIIGYAIHGQGKTALEMFDEMKCNGIEPNESTFVSVLTACSVSGLETEGWKE 236
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
F+ M E ++P I+HYGC+ D+L RAG L + +P
Sbjct: 237 FNSMQHEYGMVPQIEHYGCMTDLLGRAGDLREVLRFIENMP 277
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 13/136 (9%)
Query: 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF 74
+ PL P D FT + ++ V L Q+H+ K+G+ + A+ MY G
Sbjct: 106 NQPLYP--DYFTMTTVVPAFVLLGSLRQCRQMHSYIIKLGYGDSTLIMNAVMHMYARCGD 163
Query: 75 LKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134
+ S ++FD++P +++++WN II GY+ + AL +F M C EP
Sbjct: 164 IVASREIFDKMPGKDVISWNTIII----------GYAIHGQGKTALEMFDEM-KCNGIEP 212
Query: 135 SEITILAVLPAIWKNG 150
+E T ++VL A +G
Sbjct: 213 NESTFVSVLTACSVSG 228
>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
Length = 673
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 154/293 (52%), Gaps = 30/293 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ C LG Q+H+ GF S++ + AL D+Y G ++ + LF
Sbjct: 197 DEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLF 256
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ L +++V+WN +I GY+ MN EAL LF+ M + P+++TI+++
Sbjct: 257 EGLSCKDVVSWNTLI----------GGYTHMNLYKEALLLFQEMLRSGES-PNDVTIVSI 305
Query: 143 LPAIWKNGEVRNCQLIHGYGEKR---GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
LPA G + + IH Y +K+ NA + S LID YAKCG I +A ++F S
Sbjct: 306 LPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLRTS--LIDMYAKCGDIEAAHQVF--NS 361
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
+ K+L SW +I GFAMHG + F RM+K G++P+ +G + G
Sbjct: 362 MLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLG 421
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
F M ++ ++ P ++HYGC+ID+L +G ++A+E+ +P + + V+W
Sbjct: 422 RHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPME-PDGVIW 473
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 89/302 (29%), Positives = 148/302 (49%), Gaps = 41/302 (13%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L +S+T+ FL+++C G Q+H K+G++ +YV+T+L MY G L+D+ K
Sbjct: 63 LPNSYTFPFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHK 122
Query: 81 LFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEA 119
+FD R++V++ +ITG +V W +I GY+ EA
Sbjct: 123 VFDRSSHRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEA 182
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
L LF+ M P E T++ VL A ++ V + +H + + GF + ++ + N LI
Sbjct: 183 LELFKEMMKTN-VRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGS-NLKIVNALI 240
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D Y+KCG + +A LFE S K++VSW T+I G+ + KEA+ F+ M + G PN
Sbjct: 241 DLYSKCGQVETACGLFEGLSC--KDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPN 298
Query: 240 R--------------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAE 285
+ IG + DK +++ P ++ LID+ + G +E A
Sbjct: 299 DVTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLR--TSLIDMYAKCGDIEAAH 356
Query: 286 EV 287
+V
Sbjct: 357 QV 358
>gi|147856499|emb|CAN78640.1| hypothetical protein VITISV_031739 [Vitis vinifera]
Length = 954
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 158/314 (50%), Gaps = 45/314 (14%)
Query: 28 SFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE 87
+ ++ V L+ + G +H K GF+++++V +L +Y G + + LF E+
Sbjct: 275 AVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKT 334
Query: 88 RNLVTWNVIITG-----------------------------LVKWTGIIDGYSRMNRSNE 118
+N+V+WN +I+ +V W+ +I G++ + E
Sbjct: 335 KNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEE 394
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
AL LFRRM + + + +TI +VL + + + IHG+ R +I V N L
Sbjct: 395 ALELFRRMQLAK-VKANSVTIASVLSVCAELAALHLGREIHGH-VVRSLMDGNILVGNGL 452
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
I+ Y K G + +FE ++ K+L+SW T+++G+ +HG+G+ A+ F++M K G +P
Sbjct: 453 INMYTKSGSFKEGNLVFE--KIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEP 510
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ + EG + FDKM++E V P ++HY C++D+L RAG L++A +V
Sbjct: 511 DGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKV 570
Query: 288 ASGIPSQITNVVVW 301
+P + N VW
Sbjct: 571 VKSMPVE-PNACVW 583
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 122/273 (44%), Gaps = 44/273 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ +IR C + L +H ++GFQ +++V L MY +G + D+ K+F
Sbjct: 134 DGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVF 193
Query: 83 DELPERNLVTWNVIITG-------------------------LVKWTGIIDGYSRMNRSN 117
+ + R+ V+WN +++G LV WT ++ ++R +
Sbjct: 194 ERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHV 253
Query: 118 EALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
E + LF RM +E + VL ++IHGY K GF + + V N
Sbjct: 254 ETMELFGRMRMRGIGATAE-ALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENY-LFVKNS 311
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-- 235
LI Y K G + +A LF + KN+VSW +IS +A G EA F +++K
Sbjct: 312 LICLYGKHGNVNAARILF--LEIKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEY 369
Query: 236 --LKPN-RSWRI----------GEEGLKFFDKM 255
++PN SW GEE L+ F +M
Sbjct: 370 PMVRPNVVSWSAVIGGFASKGQGEEALELFRRM 402
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 85/196 (43%), Gaps = 12/196 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S T + ++ C L+ +LG ++H + ++ V L +MY G K+ + +F
Sbjct: 410 NSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVF 469
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+++ ++L++WN ++ GY A+ F +M + EP +T +AV
Sbjct: 470 EKIENKDLISWNTMVA----------GYGIHGLGENAIRTFDQMIKDGF-EPDGVTFVAV 518
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G V + + K + C++D + G + ASK+ + V+
Sbjct: 519 LSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVE- 577
Query: 203 KNLVSWTTIISGFAMH 218
N W +++ MH
Sbjct: 578 PNACVWGALLNSCRMH 593
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDR-KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
++ YA G + A ++FE + ++ NL+ W +I+ HG +EA+E + RM+K+G+
Sbjct: 72 VVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGV 131
Query: 237 KPN 239
+
Sbjct: 132 SAD 134
>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
Length = 532
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/306 (31%), Positives = 154/306 (50%), Gaps = 38/306 (12%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L +++T+SF++R C S L + HA K+G++S+ +V L +Y + ++ + K
Sbjct: 107 LPNNYTFSFVLRACTDNSPVGLAS--HAQVIKLGWESYDFVLNGLIHLYANWSSVEAARK 164
Query: 81 LFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEA 119
LFD R+++TW +I G VK W+ +I GY M EA
Sbjct: 165 LFDVSTCRDVITWTALINGYVKSGHVEFARELFDQMPERNEVSWSAMITGYVHMGMFREA 224
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
L LF + P+ I+ L A G + + + IH Y ++ G D + L+
Sbjct: 225 LELFNDLQLTGL-RPNHAGIVGALTACSYLGSLDHGRWIHAYVDRNG-TELDRVLGTALV 282
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D YAKCGCI A +FE + K+ ++T++ISG A HG +A++ F RMQ + PN
Sbjct: 283 DMYAKCGCIEIACSVFE--KMPDKDAFAFTSLISGLANHGQSADAIQLFGRMQSEKVIPN 340
Query: 240 R---------SWRIG--EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
R+G +EGL+ F+ M + P ++HYGC++D+L RAG LE+A+ +
Sbjct: 341 EVTFICVLSACSRMGLVDEGLRIFNCMSVVYGIEPGVQHYGCMVDLLGRAGLLEEAKRLV 400
Query: 289 SGIPSQ 294
+P +
Sbjct: 401 REMPME 406
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 84/195 (43%), Gaps = 43/195 (22%)
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM------------- 126
KLF LP R WN II V+ N + AL+L++ M
Sbjct: 65 KLFLSLPHRTTFIWNTIIRIFVE----------KNENATALSLYKNMLQTGFLPNNYTFS 114
Query: 127 ---AACEYTEPSEITILA-VLPAIWKNGEVRNCQLIHGYGEKRGFNA----FDIHVSNC- 177
AC P + A V+ W++ + LIH Y A FD VS C
Sbjct: 115 FVLRACTDNSPVGLASHAQVIKLGWESYDFVLNGLIHLYANWSSVEAARKLFD--VSTCR 172
Query: 178 -------LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
LI+ Y K G + A +LF+ + +N VSW+ +I+G+ GM +EA+E F
Sbjct: 173 DVITWTALINGYVKSGHVEFARELFD--QMPERNEVSWSAMITGYVHMGMFREALELFND 230
Query: 231 MQKVGLKPNRSWRIG 245
+Q GL+PN + +G
Sbjct: 231 LQLTGLRPNHAGIVG 245
>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 599
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 148/289 (51%), Gaps = 25/289 (8%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
++T++ +I+ C LS LG ++H+ G+ S +YV AL +Y +K + K+FD
Sbjct: 125 NYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFD 184
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
+P+R ++ WN +I+ GY + E++ LF M + +P TI+++L
Sbjct: 185 AMPQRTIIAWNSLIS----------GYDQNGLPQESIGLFHLMMESGF-QPDSATIVSLL 233
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
+ + G + +H Y + GF+ ++ + LI+ Y +CG + A ++F+ S+ +
Sbjct: 234 SSCSQLGALDFGCWLHDYADGNGFD-LNVVLGTSLINMYTRCGNVSKAREVFD--SMKER 290
Query: 204 NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFF 252
N+V+WT +ISG+ MHG G++A+E F M+ G +PN + ++G + F
Sbjct: 291 NVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVF 350
Query: 253 DKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
M E ++P ++H C++D+ RAG L A + + VW
Sbjct: 351 SSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVW 399
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 117/271 (43%), Gaps = 49/271 (18%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DS T L+ +C L + G LH GF +V + T+L +MY G + + ++F
Sbjct: 225 DSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVF 284
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + ERN+VTW +I+G + GY R +A+ LF M A P+ IT +AV
Sbjct: 285 DSMKERNVVTWTAMISGYG-----MHGYGR-----QAMELFTEMRAYG-PRPNNITFVAV 333
Query: 143 LPAIWKNGEVRNCQLI-----HGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
L A +G + + + + YG G + + C++D + + G + A + +
Sbjct: 334 LSACAHSGLIDDGRRVFSSMKEAYGLVPG-----VEHNVCMVDMFGRAGLLNDAYQFIKK 388
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVE 257
WT+++ MH NF+ +G+K + E L
Sbjct: 389 FIPKEPGPAVWTSMLGACRMH-------RNFD----LGVK------VAEHVL-------- 423
Query: 258 ECEVLPD-IKHYGCLIDILERAGRLEQAEEV 287
V P+ HY L +I AGR+++ E V
Sbjct: 424 --SVEPENPGHYVMLSNIYALAGRMDRVEMV 452
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 135/321 (42%), Gaps = 55/321 (17%)
Query: 6 QLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGT--QLHAVFSKVGFQSHVYVNT 63
+LQ + P+ FD+ ++S + + S P L Q+HA G + T
Sbjct: 5 KLQTQQLAFQHPVTRNFDTQSHS-PVHEALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLT 63
Query: 64 ALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDG---YSRMNRSNEAL 120
L + + G + + +LF +P + ++ ++ K+ ID Y RM
Sbjct: 64 KLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRM------- 116
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LF YT S I A L A+ E+ + ++ GYG D++V LI
Sbjct: 117 -LFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGS-------DMYVQAALIA 168
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
YAK + A K+F+ ++ ++ +++W ++ISG+ +G+ +E++ F M + G +P+
Sbjct: 169 LYAKASDMKVAKKVFD--AMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDS 226
Query: 241 SWRIGEEGLKFFDKMVEECEVLPDIKHYGC--------------------LIDILERAGR 280
+ + ++ C L + +GC LI++ R G
Sbjct: 227 ATIV---------SLLSSCSQLGALD-FGCWLHDYADGNGFDLNVVLGTSLINMYTRCGN 276
Query: 281 LEQAEEVASGIPSQITNVVVW 301
+ +A EV + + NVV W
Sbjct: 277 VSKAREVFDSMKER--NVVTW 295
>gi|414586383|tpg|DAA36954.1| TPA: hypothetical protein ZEAMMB73_991125 [Zea mays]
Length = 1021
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 158/295 (53%), Gaps = 31/295 (10%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALG----DMYVSLGFLKDSS 79
+FT++ ++ C +G Q+H K + +T+LG +Y+ L+D++
Sbjct: 627 NFTFTSILSGCTRPVSSVIGKQVHCYTLKSAILNQ---DTSLGISLVGIYLKCKLLEDAN 683
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
KL +E+P+ LV+WT I GY++ S ++L +F RM + + E T
Sbjct: 684 KLLEEVPDHK---------NLVEWTATISGYAQNGYSVQSLVMFWRMRSYD-VRSDEATF 733
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+VL A + + + + IHG K GF +++ S L+D Y+KCG + S+ ++F++
Sbjct: 734 TSVLKACSEMAALTDGKEIHGLIVKSGFVSYETATS-ALMDMYSKCGDVISSFEIFKELK 792
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
+R+N++ W ++I GFA +G EA+ F++MQ+ +KP+ +G EG
Sbjct: 793 -NRQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQIKPDDVTLLGVLIACSHAGLISEG 851
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
L FFD M + ++P + HY CLID+L R G L++A+EV +P + + V+W T
Sbjct: 852 LHFFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQKAQEVIDQLPFR-ADGVIWAT 905
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 106/211 (50%), Gaps = 14/211 (6%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T++ ++ ++ + G Q+HA K G ++V+V ++L ++YV G + D+ K+FD
Sbjct: 326 TFASILSAAANMTAFDEGRQIHATAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFS 385
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
E+N+V WN I+ G V+ E + +F+ M + E + T ++VL A
Sbjct: 386 TEKNIVMWNAILYGFVQ----------NELQEETIQMFQYMRRADL-EADDFTFVSVLGA 434
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
+ + +H K G +A D+ V+N ++D Y+K G I A LF V K+
Sbjct: 435 CINLYSLDLGRQVHCITIKNGMDA-DLFVANAMLDMYSKLGAIDVAKALFSLIPV--KDS 491
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
VSW +I G A + EA+ +RM+ G+
Sbjct: 492 VSWNALIVGLAHNEEEGEAINMLKRMKFYGI 522
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 104/220 (47%), Gaps = 20/220 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ ++ C+ L +LG Q+H + K G + ++V A+ DMY LG + + LF
Sbjct: 424 DDFTFVSVLGACINLYSLDLGRQVHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKALF 483
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA--ACEYTEPSEITIL 140
+P ++ V+WN +I GL + EA+ + +RM E S T +
Sbjct: 484 SLIPVKDSVSWNALIVGL----------AHNEEEGEAINMLKRMKFYGIALDEVSFATAI 533
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIH-VSNCLIDTYAKCGCIFSASKLFEDTS 199
IW + + IH K +N H V + LID Y+K G + S+ K+
Sbjct: 534 NACSNIWA---IETGKQIHSASIK--YNVCSNHAVGSSLIDLYSKFGDVESSRKVL--AH 586
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
VD ++V +I+G + EA+E F+++ K G KP+
Sbjct: 587 VDASSIVPINALITGLVQNNREDEAIELFQQVLKDGFKPS 626
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 102/216 (47%), Gaps = 20/216 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T++ +++ C ++ G ++H + K GF S+ +AL DMY G + S ++F
Sbjct: 729 DEATFTSVLKACSEMAALTDGKEIHGLIVKSGFVSYETATSALMDMYSKCGDVISSFEIF 788
Query: 83 DELPER-NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
EL R N++ WN +I G K +GY +NEAL LF++M + +P ++T+L
Sbjct: 789 KELKNRQNIMPWNSMIVGFAK-----NGY-----ANEALLLFQKMQESQ-IKPDDVTLLG 837
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN--CLIDTYAKCGCIFSASKLFEDTS 199
VL A G + + +H + V + CLID + G + A ++ +
Sbjct: 838 VLIACSHAGLIS--EGLHFFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQKAQEVIDQLP 895
Query: 200 VDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQ 232
R + V W T ++ MH GK A + M+
Sbjct: 896 F-RADGVIWATYLAACQMHKDEERGKVAAKKLVEME 930
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 86/219 (39%), Gaps = 49/219 (22%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D F + ++ C L G Q+H K GF S V+ L DMY G + D+ ++F
Sbjct: 156 DQFGIAVVLSACSRLGALEHGRQVHCDVLKSGFCSSVFCQAGLVDMYAKCGEVDDARRMF 215
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + + WT +I GY R+ R +ALALF RM + P ++T + +
Sbjct: 216 D----------GIACPDTICWTSMIAGYHRVGRYQQALALFSRMEKMG-SVPDQVTCVTI 264
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
I T A G + A L + +
Sbjct: 265 ------------------------------------ISTLASMGRLGDARTLLK--RIRM 286
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
+ V+W +I+ ++ G+ E ++ M+K GL P RS
Sbjct: 287 TSTVAWNAVIASYSQSGLDSEVFGLYKDMKKQGLMPTRS 325
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 80/170 (47%), Gaps = 14/170 (8%)
Query: 70 VSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC 129
S+G L D+ L + + V WN +I YS+ +E L++ M
Sbjct: 269 ASMGRLGDARTLLKRIRMTSTVAWNAVIAS----------YSQSGLDSEVFGLYKDMKK- 317
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
+ P+ T ++L A + IH K G +A ++ V + LI+ Y K GCI
Sbjct: 318 QGLMPTRSTFASILSAAANMTAFDEGRQIHATAVKHGLDA-NVFVGSSLINLYVKHGCIS 376
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
A K+F+ ++ KN+V W I+ GF + + +E ++ F+ M++ L+ +
Sbjct: 377 DAKKVFDFST--EKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEAD 424
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 70/135 (51%), Gaps = 3/135 (2%)
Query: 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
++ ++R + L F+R+ + P + I VL A + G + + + +H K
Sbjct: 127 VLSCHARSGSPRDVLDAFQRIRCSIGSTPDQFGIAVVLSACSRLGALEHGRQVHCDVLKS 186
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225
GF + + L+D YAKCG + A ++F+ + + + WT++I+G+ G ++A+
Sbjct: 187 GFCS-SVFCQAGLVDMYAKCGEVDDARRMFDGIAC--PDTICWTSMIAGYHRVGRYQQAL 243
Query: 226 ENFERMQKVGLKPNR 240
F RM+K+G P++
Sbjct: 244 ALFSRMEKMGSVPDQ 258
>gi|357141490|ref|XP_003572243.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g47530-like [Brachypodium distachyon]
Length = 884
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/293 (30%), Positives = 152/293 (51%), Gaps = 28/293 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++F+ + L++ C TLS+ QLHA G + T+L Y G + K+F
Sbjct: 410 NAFSLAILLKPCRTLSH---ARQLHANVVIEGHLRDSLLATSLMRSYAICGVGDCARKVF 466
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY-TEPSEITILA 141
DE+ ++ V WNV+IT Y+R R+ + L LF M E +P E+T +
Sbjct: 467 DEMVMKDTVAWNVLITC----------YARNKRTKDTLWLFDEMRRGESEVKPDEVTCIL 516
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+L A G + + I Y + G+ ++ V N +I Y +CGC+ A ++F T
Sbjct: 517 LLQACTSLGALDFGEQIWEYAVEHGYGC-ELKVRNSVITMYTRCGCVEKAYQVFCHTP-- 573
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
+K++V+W+ +I G A +G G++A+ FE M + G+ P+ G +EG +
Sbjct: 574 QKSVVTWSAMIMGLAANGFGEDAISAFEEMSRSGVVPDGQTFTGVLSACSHSGLVDEGFR 633
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
FFD M E +++P+++HYGC++D++ RAG L++A E+ + +WRT
Sbjct: 634 FFDMMRYEYKMMPNVRHYGCIVDLMGRAGLLDEAYELVVKEMKVAPDATIWRT 686
>gi|347954494|gb|AEP33747.1| chloroplast biogenesis 19, partial [Brassica oleracea]
Length = 485
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/263 (34%), Positives = 148/263 (56%), Gaps = 26/263 (9%)
Query: 49 VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIID 108
VF +V ++ V NT + D Y+ G + D++K+FDE+PER+L++W +I G VK G+ +
Sbjct: 120 VFDRVEDKNSVTWNTMI-DGYMRSGRVDDAAKVFDEMPERDLISWTAMINGFVK-KGLHE 177
Query: 109 GYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN 168
EALA FR M +P + ++A L A G + +H + + F
Sbjct: 178 ---------EALAWFREMQVSG-VKPDYVAVIAALAACANLGALSFGLWVHRFVVSQDFK 227
Query: 169 AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENF 228
++ VSN LID Y +CGC+ A ++F++ ++++ +VSW ++I GFA +G E++ F
Sbjct: 228 N-NVRVSNSLIDLYCRCGCVEFARQVFDE--MEKRTVVSWNSVIVGFAANGHAHESLVYF 284
Query: 229 ERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILER 277
RMQ+ KP+ G EEG+++F+ M + + P I+HYGCL+D+ R
Sbjct: 285 RRMQEERFKPDAVTFTGALTACSHVGLVEEGVRYFEAMKRDYRISPRIEHYGCLVDLYSR 344
Query: 278 AGRLEQAEEVASGIPSQITNVVV 300
AGRLE+A +V +P + VV+
Sbjct: 345 AGRLEEALKVVESMPMKPNEVVI 367
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 99/206 (48%), Gaps = 15/206 (7%)
Query: 41 NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGL 100
+ G +H F+++V V+ +L D+Y G ++ + ++FDE+ +R +V+WN +I
Sbjct: 212 SFGLWVHRFVVSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFDEMEKRTVVSWNSVIV-- 269
Query: 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHG 160
G++ ++E+L FRRM E +P +T L A G V + +
Sbjct: 270 --------GFAANGHAHESLVYFRRMQE-ERFKPDAVTFTGALTACSHVGLVEE-GVRYF 319
Query: 161 YGEKRGFN-AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
KR + + I CL+D Y++ G + A K+ E + + N V ++++ HG
Sbjct: 320 EAMKRDYRISPRIEHYGCLVDLYSRAGRLEEALKVVESMPM-KPNEVVIGSLLAACRTHG 378
Query: 220 MGKEAVEN-FERMQKVGLKPNRSWRI 244
E E +R+ ++ +K + ++ I
Sbjct: 379 NDTELAERMMKRLSELKVKGHSNYVI 404
>gi|30017569|gb|AAP12991.1| hypothetical protein [Oryza sativa Japonica Group]
gi|40539031|gb|AAR87288.1| putative PPR repeat containing protein [Oryza sativa Japonica
Group]
gi|108711017|gb|ABF98812.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 676
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 150/304 (49%), Gaps = 38/304 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVF-SKVGFQSH-VYVNTALGDMYVSLGFLKDSSK 80
D +T L+ C L LG +H V ++G + ++ AL DMY G + + +
Sbjct: 228 DQYTAVALLACCGRLKKAVLGRSVHGVVVRRIGVADRGLILSNALLDMYAKCGEMNTAMR 287
Query: 81 LFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEA 119
+FDE ER+ ++WN ++ G ++ W ++ GY+R +
Sbjct: 288 VFDEAGERDGISWNTMVAGFANAGLLDLASKYFGEAPARDIISWNALLAGYARYEEFSAT 347
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
+ LF M A P ++T + ++ A+ G + + + +HG+ K D +++ L+
Sbjct: 348 MILFHDMLASSVI-PDKVTAVTLISAVAGKGTLNSARSVHGWVVKE-HGTQDSFLASALV 405
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D Y KCG I A +FE +VD K++ WT +ISG A HG G A++ F +MQ G +PN
Sbjct: 406 DMYCKCGSIKLAYAVFEK-AVD-KDVTLWTAMISGLAFHGHGDVALDLFWKMQAEGTEPN 463
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
+ +EG K FD + + + P ++H+GC++D+L R+GRL A ++A
Sbjct: 464 GVTLVAVLSACSHAGLFDEGCKIFDTLKQRFNIEPGVEHFGCMVDLLARSGRLSDAVDLA 523
Query: 289 SGIP 292
+P
Sbjct: 524 RRMP 527
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/279 (26%), Positives = 125/279 (44%), Gaps = 35/279 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ L+++ V ++G Q+HA G S VY+ +L MY+ G ++ + +F
Sbjct: 128 DEQTFLSLLKS-VDAERRSVGKQVHAHVVVTGLHSRVYLRNSLIKMYLDAGDVEAAEAMF 186
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
P + V+ N++++G VK S +AL FR MA+ + T +A+
Sbjct: 187 RCAPTADAVSCNIMLSGYVKG----------GCSGKALRFFRGMAS-RGIGVDQYTAVAL 235
Query: 143 LPAIWKNGEVRNCQLIHGYGEKR-GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L + + + +HG +R G + +SN L+D YAKCG + +A ++F++
Sbjct: 236 LACCGRLKKAVLGRSVHGVVVRRIGVADRGLILSNALLDMYAKCGEMNTAMRVFDEAG-- 293
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---SWRIGEEG---------- 248
++ +SW T+++GFA G+ A + F G P R SW G
Sbjct: 294 ERDGISWNTMVAGFANAGLLDLASKYF------GEAPARDIISWNALLAGYARYEEFSAT 347
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ F M+ V+PD LI + G L A V
Sbjct: 348 MILFHDMLAS-SVIPDKVTAVTLISAVAGKGTLNSARSV 385
>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
Length = 922
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 164/327 (50%), Gaps = 43/327 (13%)
Query: 7 LQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALG 66
LQ+++ S + P S T F C + GTQ+H++ KVG Q + + AL
Sbjct: 407 LQELH---RSGMLPSLSSLTSIFF--ACSNIVALETGTQVHSLAVKVGCQFNSFACNALI 461
Query: 67 DMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK---------------------WTG 105
MY ++ + ++F + +++V+WN + LV+ WT
Sbjct: 462 TMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTT 521
Query: 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
II Y+ +SNEA+ F+ M CE+ P+ + +L G + Q IH K
Sbjct: 522 IISAYAHAEQSNEAMGAFKTMF-CEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKL 580
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225
G ++ ++ V+N LI Y KCGC S ++F+ ++ +++ +W TII+G+A HG+G+EA+
Sbjct: 581 GMDS-ELIVANALISMYFKCGCADS-RRIFD--LMEERDIFTWNTIITGYAQHGLGREAI 636
Query: 226 ENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDI 274
+ ++ M+ G+ PN +G +EG KFF M ++ + P +HY C++D+
Sbjct: 637 KMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDL 696
Query: 275 LERAGRLEQAEEVASGIPSQITNVVVW 301
L R G ++ AE+ +P + + V+W
Sbjct: 697 LGRTGDVQGAEQFIYDMPIE-PDTVIW 722
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 102/232 (43%), Gaps = 33/232 (14%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ +T+S +I LS+ AV+ + +S + TAL G + D+ LF
Sbjct: 290 NEYTWSTMI---AALSHGGRIDAAIAVYERDPVKS-IACRTALITGLAQCGRIDDARILF 345
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
+++PE +V+WN +ITG + W G+I GY++ RS EAL
Sbjct: 346 EQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALG 405
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRG--FNAFDIHVSNCLI 179
L + + PS ++ ++ A + +H K G FN+F N LI
Sbjct: 406 LLQELHRSGML-PSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSF---ACNALI 461
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
Y KC + A ++F + + K++VSW + ++ + + EA F+ M
Sbjct: 462 TMYGKCRNMEYARQVF--SRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM 511
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 83/353 (23%), Positives = 143/353 (40%), Gaps = 68/353 (19%)
Query: 1 FLVYKQLQQIYIHSHSP--LPPLFDSFTYSFLIRTCVTLS-YPNLGTQLHA--VFSKVGF 55
+ + + Y H+ P L+D+ + + + LS Y LG L A VF +
Sbjct: 65 IIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGYGRLGRVLEARRVFDGMLE 124
Query: 56 QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG---------------- 99
++ V N A+ YV G + + +LFD +P R++ +WN ++TG
Sbjct: 125 RNTVAWN-AMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEK 183
Query: 100 -----LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRN 154
LV WT +I GY R+ +A +F +M E P + + L A+ G +
Sbjct: 184 MPERNLVSWTVMISGYGRIENHGKAWDIFCKMHR-EGLLPDQSNFASALSAVKGLGNLDV 242
Query: 155 CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF-SASKLFEDTSVDRKNLVSWTTIIS 213
+ + K GF D+ + +++ Y++ + +A K FE S+ +N +W+T+I+
Sbjct: 243 LESLRVLALKTGFER-DVVIGTAILNVYSRDTSVLDTAIKFFE--SMIERNEYTWSTMIA 299
Query: 214 GFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLID 273
+ G A+ +ER P +S I LI
Sbjct: 300 ALSHGGRIDAAIAVYER------DPVKS-----------------------IACRTALIT 330
Query: 274 ILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLF 326
L + GR++ A + IP I VV W LI Y + + ++ LF
Sbjct: 331 GLAQCGRIDDARILFEQIPEPI--VVSWNA-----LITGYMQNGMVNEAKELF 376
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 39/194 (20%)
Query: 72 LGFLKDSSKLFDELPERNLVTWNVI-------------------ITGLVKWTGII--DGY 110
LG + ++ ++FD +P R+++ WN + I+G TG I GY
Sbjct: 47 LGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGY 106
Query: 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF 170
R+ R EA +F M E + + A++ +NG++ +R F+A
Sbjct: 107 GRLGRVLEARRVFDGM-----LERNTVAWNAMISCYVQNGDITMA--------RRLFDAM 153
Query: 171 ---DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVEN 227
D+ N ++ Y + A LFE + +NLVSWT +ISG+ +A +
Sbjct: 154 PSRDVSSWNSMLTGYCHSLQMVDARNLFE--KMPERNLVSWTVMISGYGRIENHGKAWDI 211
Query: 228 FERMQKVGLKPNRS 241
F +M + GL P++S
Sbjct: 212 FCKMHREGLLPDQS 225
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 106/236 (44%), Gaps = 36/236 (15%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
+H LP D ++ + L ++ L + K GF+ V + TA+ ++Y
Sbjct: 215 MHREGLLP---DQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSR 271
Query: 72 LGFLKDSS-KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE 130
+ D++ K F+ + ERN TW+ +I L S R + A+A++ R
Sbjct: 272 DTSVLDTAIKFFESMIERNEYTWSTMIAAL----------SHGGRIDAAIAVYER----- 316
Query: 131 YTEP--SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD--IHVS-NCLIDTYAKC 185
+P S A++ + + G + + +++ F I VS N LI Y +
Sbjct: 317 --DPVKSIACRTALITGLAQCGRIDDARIL--------FEQIPEPIVVSWNALITGYMQN 366
Query: 186 GCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
G + A +LF+ +N +SW +I+G+A +G +EA+ + + + G+ P+ S
Sbjct: 367 GMVNEAKELFDKMPF--RNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLS 420
>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
Length = 922
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 93/327 (28%), Positives = 164/327 (50%), Gaps = 43/327 (13%)
Query: 7 LQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALG 66
LQ+++ S + P S T F C + GTQ+H++ KVG Q + + AL
Sbjct: 407 LQELH---RSGMLPSLSSLTSIFF--ACSNIVALETGTQVHSLAVKVGCQFNSFACNALI 461
Query: 67 DMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK---------------------WTG 105
MY ++ + ++F + +++V+WN + LV+ WT
Sbjct: 462 TMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTT 521
Query: 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
II Y+ +SNEA+ F+ M CE+ P+ + +L G + Q IH K
Sbjct: 522 IISAYAHAEQSNEAMGAFKTMF-CEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKL 580
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225
G ++ ++ V+N LI Y KCGC S ++F+ ++ +++ +W TII+G+A HG+G+EA+
Sbjct: 581 GMDS-ELIVANALISMYFKCGCADS-RRIFD--LMEERDIFTWNTIITGYAQHGLGREAI 636
Query: 226 ENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDI 274
+ ++ M+ G+ PN +G +EG KFF M ++ + P +HY C++D+
Sbjct: 637 KMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDL 696
Query: 275 LERAGRLEQAEEVASGIPSQITNVVVW 301
L R G ++ AE+ +P + + V+W
Sbjct: 697 LGRTGDVQGAEQFIYDMPIE-PDTVIW 722
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 102/232 (43%), Gaps = 33/232 (14%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ +T+S +I LS+ AV+ + +S + TAL G + D+ LF
Sbjct: 290 NEYTWSTMI---AALSHGGRIDAAIAVYERDPVKS-IACRTALITGLAQCGRIDDARILF 345
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
+++PE +V+WN +ITG + W G+I GY++ RS EAL
Sbjct: 346 EQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALG 405
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRG--FNAFDIHVSNCLI 179
L + + PS ++ ++ A + +H K G FN+F N LI
Sbjct: 406 LLQELHRSGML-PSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSF---ACNALI 461
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
Y KC + A ++F + + K++VSW + ++ + + EA F+ M
Sbjct: 462 TMYGKCRNMEYARQVF--SRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNM 511
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 83/353 (23%), Positives = 143/353 (40%), Gaps = 68/353 (19%)
Query: 1 FLVYKQLQQIYIHSHSP--LPPLFDSFTYSFLIRTCVTLS-YPNLGTQLHA--VFSKVGF 55
+ + + Y H+ P L+D+ + + + LS Y LG L A VF +
Sbjct: 65 IIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGYGRLGRVLEARRVFDGMLE 124
Query: 56 QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG---------------- 99
++ V N A+ YV G + + +LFD +P R++ +WN ++TG
Sbjct: 125 RNTVAWN-AMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEK 183
Query: 100 -----LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRN 154
LV WT +I GY R+ +A +F +M E P + + L A+ G +
Sbjct: 184 MPERNLVSWTVMISGYGRIENHGKAWDIFCKMHR-EGLLPDQSNFASALSAVKGLGNLDV 242
Query: 155 CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF-SASKLFEDTSVDRKNLVSWTTIIS 213
+ + K GF D+ + +++ Y++ + +A K FE S+ +N +W+T+I+
Sbjct: 243 LESLRVLALKTGFER-DVVIGTAILNVYSRDTSVLDTAIKFFE--SMIERNEYTWSTMIA 299
Query: 214 GFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLID 273
+ G A+ +ER P +S I LI
Sbjct: 300 ALSHGGRIDAAIAVYER------DPVKS-----------------------IACRTALIT 330
Query: 274 ILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLF 326
L + GR++ A + IP I VV W LI Y + + ++ LF
Sbjct: 331 GLAQCGRIDDARILFEQIPEPI--VVSWNA-----LITGYMQNGMVNEAKELF 376
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 87/194 (44%), Gaps = 39/194 (20%)
Query: 72 LGFLKDSSKLFDELPERNLVTWNVI-------------------ITGLVKWTGII--DGY 110
LG + ++ ++FD +P R+++ WN + I+G TG I GY
Sbjct: 47 LGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLSGY 106
Query: 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF 170
R+ R EA +F M E + + A++ +NG++ +R F+A
Sbjct: 107 GRLGRVLEARRVFDGM-----LERNTVAWNAMISCYVQNGDITMA--------RRLFDAM 153
Query: 171 ---DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVEN 227
D+ N ++ Y + A LFE + +NLVSWT +ISG+ +A +
Sbjct: 154 PSRDVSSWNSMLTGYCHSLQMVDARNLFE--KMPERNLVSWTVMISGYGRIENHGKAWDI 211
Query: 228 FERMQKVGLKPNRS 241
F +M + GL P++S
Sbjct: 212 FCKMHREGLLPDQS 225
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 106/236 (44%), Gaps = 36/236 (15%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
+H LP D ++ + L ++ L + K GF+ V + TA+ ++Y
Sbjct: 215 MHREGLLP---DQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSR 271
Query: 72 LGFLKDSS-KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE 130
+ D++ K F+ + ERN TW+ +I L S R + A+A++ R
Sbjct: 272 DTSVLDTAIKFFESMIERNEYTWSTMIAAL----------SHGGRIDAAIAVYER----- 316
Query: 131 YTEP--SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD--IHVS-NCLIDTYAKC 185
+P S A++ + + G + + +++ F I VS N LI Y +
Sbjct: 317 --DPVKSIACRTALITGLAQCGRIDDARIL--------FEQIPEPIVVSWNALITGYMQN 366
Query: 186 GCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
G + A +LF+ +N +SW +I+G+A +G +EA+ + + + G+ P+ S
Sbjct: 367 GMVNEAKELFDKMPF--RNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLS 420
>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
Length = 559
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 148/291 (50%), Gaps = 25/291 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FTY L + C +L G Q+H K G + ++V +L +MY G ++ S +F
Sbjct: 84 DNFTYPALFKACASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKCGKIELSCSVF 143
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + R++ +W+ II ++ + +E L++F M+ P E +++V
Sbjct: 144 EHMDRRDVASWSAIIA----------AHASLGMWSECLSVFGEMSREGSCRPEESILVSV 193
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + + H R ++ V LID Y KCGCI LF+ + +
Sbjct: 194 LSACTHLGALDLGRCTH-VTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQ--RMVK 250
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN +S++ +I+G AMHG G EA++ F M + GLKP+ +G +EGL+
Sbjct: 251 KNQLSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQC 310
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
F++M E + P I+HYGC++ ++ RAG L +A E +P + N VVWR
Sbjct: 311 FNRMKLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMPIK-PNEVVWR 360
>gi|297744484|emb|CBI37746.3| unnamed protein product [Vitis vinifera]
Length = 2090
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 152/286 (53%), Gaps = 25/286 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T L+++C P +H++ + G++ + +V +L D Y ++ + KLF
Sbjct: 337 DEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLF 396
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D L ++ V+W+ +I G ++ + +EA+ALF+ M + +P+ +TIL++
Sbjct: 397 DRLKTKDTVSWSAMIAG----------FNHCGKPDEAIALFQEMNQAQ-EKPNGVTILSL 445
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + +++ + HG +RG A ++ V ++D YAKCG I + K F+ +
Sbjct: 446 LEAFSVSADLKRSKWAHGIAIRRGLAA-EVAVGTAILDMYAKCGEIGLSRKAFDQ--IPE 502
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN+VSW +I+ M+G+ ++A+ M+ GLKPN + EEGL F
Sbjct: 503 KNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVLSACSHGGLVEEGLSF 562
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITN 297
F+ MV++ V P ++HY C++D+L RAG+L A + +P ++ +
Sbjct: 563 FENMVQDHGVEPGLEHYSCMVDMLSRAGKLNSAMNLIEKMPERMRD 608
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 113/235 (48%), Gaps = 14/235 (5%)
Query: 5 KQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTA 64
K Q+++ S D T +++ C ++G +H V G ++V +
Sbjct: 218 KMALQLFLEMTSNASIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNS 277
Query: 65 LGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFR 124
+ DMY + + K F+E+P RN V+WN II+GLV R + +EAL+LF
Sbjct: 278 IIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLV----------RTEKHSEALSLFY 327
Query: 125 RMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK 184
M + E+T++ +L + + C+ IH + G+ + V N LID Y+K
Sbjct: 328 SMGKAGF-RADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYE-LNEFVINSLIDAYSK 385
Query: 185 CGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
C I A KLF+ + K+ VSW+ +I+GF G EA+ F+ M + KPN
Sbjct: 386 CDLIELAWKLFD--RLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPN 438
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 102/215 (47%), Gaps = 14/215 (6%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T I C +L G ++H + GF V +L MY ++ + +LFDE+
Sbjct: 138 TLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYAD-NDMERAEELFDEM 196
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
ER++++W+V +I GY + + AL LF M + E IT+++VL A
Sbjct: 197 CERDVISWSV----------MIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKA 246
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
G++ + +HG RG + +D+ V N +ID Y+KC SA K F + +N
Sbjct: 247 CANTGDISMGRSVHGVVICRGLD-YDLFVGNSIIDMYSKCDDHESAFKAFNEMPC--RNT 303
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
VSW +IISG EA+ F M K G + +
Sbjct: 304 VSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADE 338
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 87/187 (46%), Gaps = 17/187 (9%)
Query: 46 LHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTG 105
L A S GF S ++ D Y+ G L + +FD + R+ V+WN+
Sbjct: 57 LKACSSLPGFDSLTSTGNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNI---------- 106
Query: 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
+I G+ S++ L FR+ + EP+ T++ + A G + +HGY +
Sbjct: 107 MIHGHLSRGASDKGLWWFRQARVIAF-EPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRS 165
Query: 166 GFNAFDI-HVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
GF DI V N L+ YA + A +LF++ ++++SW+ +I G+ G K A
Sbjct: 166 GF--LDIPSVQNSLLSMYAD-NDMERAEELFDEMC--ERDVISWSVMIGGYVQTGEAKMA 220
Query: 225 VENFERM 231
++ F M
Sbjct: 221 LQLFLEM 227
>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Cucumis sativus]
Length = 663
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 148/289 (51%), Gaps = 25/289 (8%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
++T++ +I+ C LS LG ++H+ G+ S +YV AL +Y +K + K+FD
Sbjct: 189 NYTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFD 248
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
+P+R ++ WN +I+ GY + E++ LF M + +P TI+++L
Sbjct: 249 AMPQRTIIAWNSLIS----------GYDQNGLPQESIGLFHLMMESGF-QPDSATIVSLL 297
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
+ + G + +H Y + GF+ ++ + LI+ Y +CG + A ++F+ S+ +
Sbjct: 298 SSCSQLGALDFGCWLHDYADGNGFD-LNVVLGTSLINMYTRCGNVSKAREVFD--SMKER 354
Query: 204 NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFF 252
N+V+WT +ISG+ MHG G++A+E F M+ G +PN + ++G + F
Sbjct: 355 NVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVF 414
Query: 253 DKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
M E ++P ++H C++D+ RAG L A + + VW
Sbjct: 415 SSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVW 463
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 117/271 (43%), Gaps = 49/271 (18%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DS T L+ +C L + G LH GF +V + T+L +MY G + + ++F
Sbjct: 289 DSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVF 348
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + ERN+VTW +I+G + GY R +A+ LF M A P+ IT +AV
Sbjct: 349 DSMKERNVVTWTAMISGYG-----MHGYGR-----QAMELFTEMRAYG-PRPNNITFVAV 397
Query: 143 LPAIWKNGEVRNCQLI-----HGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
L A +G + + + + YG G + + C++D + + G + A + +
Sbjct: 398 LSACAHSGLIDDGRRVFSSMKEAYGLVPG-----VEHNVCMVDMFGRAGLLNDAYQFIKK 452
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVE 257
WT+++ MH NF+ +G+K + E L
Sbjct: 453 FIPKEPGPAVWTSMLGACRMH-------RNFD----LGVK------VAEHVL-------- 487
Query: 258 ECEVLPD-IKHYGCLIDILERAGRLEQAEEV 287
V P+ HY L +I AGR+++ E V
Sbjct: 488 --SVEPENPGHYVMLSNIYALAGRMDRVEMV 516
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/321 (22%), Positives = 135/321 (42%), Gaps = 55/321 (17%)
Query: 6 QLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGT--QLHAVFSKVGFQSHVYVNT 63
+LQ + P+ FD+ ++S + + S P L Q+HA G + T
Sbjct: 69 KLQTQQLAFQHPVTRNFDTQSHS-PVHEALLRSGPRLRNLQQVHAHIIVSGLHRSRSLLT 127
Query: 64 ALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDG---YSRMNRSNEAL 120
L + + G + + +LF +P + ++ ++ K+ ID Y RM
Sbjct: 128 KLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRM------- 180
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LF YT S I A L A+ E+ + ++ GYG D++V LI
Sbjct: 181 -LFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMVCGYGS-------DMYVQAALIA 232
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
YAK + A K+F+ ++ ++ +++W ++ISG+ +G+ +E++ F M + G +P+
Sbjct: 233 LYAKASDMKVAKKVFD--AMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQPDS 290
Query: 241 SWRIGEEGLKFFDKMVEECEVLPDIKHYGC--------------------LIDILERAGR 280
+ + ++ C L + +GC LI++ R G
Sbjct: 291 ATIV---------SLLSSCSQLGALD-FGCWLHDYADGNGFDLNVVLGTSLINMYTRCGN 340
Query: 281 LEQAEEVASGIPSQITNVVVW 301
+ +A EV + + NVV W
Sbjct: 341 VSKAREVFDSMKER--NVVTW 359
>gi|359481497|ref|XP_002273989.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g37320-like [Vitis vinifera]
Length = 510
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/337 (28%), Positives = 164/337 (48%), Gaps = 42/337 (12%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
+ D+ S + C + G Q H + + GF +VYV + L Y G L + +
Sbjct: 110 IVDASALSHALSLCASSRSLKSGVQFHCLAIRTGFVGNVYVGSCLISFYSKCGELCHAYR 169
Query: 81 LFDELPERNLVTWNVIITGLVK-W--TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
+F+E+P +N+V+W II G + W G ++ YSRM S +P+++
Sbjct: 170 VFEEMPVKNVVSWTAIIAGFAQEWLVDGCLELYSRMRNST--------------LKPNDL 215
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
T +L G + + H + GF+++ +HV+N LI Y KCG + A +FE
Sbjct: 216 TFTCLLSTCTGGGSLGRGRSAHCQTIEMGFDSY-VHVANALISMYCKCGNVEDAYYIFE- 273
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGE 246
+D K++VSW ++I+G A HG+ +A++ FE M+K LKP+ R + +
Sbjct: 274 -RMDGKDIVSWNSMIAGHAQHGLAVQAIDLFEEMKKQKLKPDAITFLGVLSSCRHVGLVK 332
Query: 247 EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFL 306
+G +F+ MVE V P++ H+ C++D+L RAG LE+A + +P N ++W +
Sbjct: 333 QGQFYFNSMVEH-GVKPELDHFACVVDLLGRAGLLEEARDFIVKMPIH-PNAIIWGSLLS 390
Query: 307 RLLINSYFFSPITLNSQRLFFFP---------AALYA 334
++ + I RL P A+LYA
Sbjct: 391 SCRLHGSVWLGIEAAENRLLLEPECAATHLQLASLYA 427
>gi|359482518|ref|XP_002279880.2| PREDICTED: uncharacterized protein LOC100266920 [Vitis vinifera]
Length = 1753
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 158/314 (50%), Gaps = 45/314 (14%)
Query: 28 SFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE 87
+ ++ V L+ + G +H K GF+++++V +L +Y G + + LF E+
Sbjct: 1113 AVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKT 1172
Query: 88 RNLVTWNVIITG-----------------------------LVKWTGIIDGYSRMNRSNE 118
+N+V+WN +I+ +V W+ +I G++ + E
Sbjct: 1173 KNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEE 1232
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
AL LFRRM + + + +TI +VL + + + IHG+ R +I V N L
Sbjct: 1233 ALELFRRMQLAK-VKANSVTIASVLSVCAELAALHLGREIHGH-VVRSLMDGNILVGNGL 1290
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
I+ Y K G + +FE ++ K+L+SW T+++G+ +HG+G+ A+ F++M K G +P
Sbjct: 1291 INMYTKSGSFKEGNLVFE--KIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEP 1348
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ + EG + FDKM++E V P ++HY C++D+L RAG L++A +V
Sbjct: 1349 DGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKV 1408
Query: 288 ASGIPSQITNVVVW 301
+P + N VW
Sbjct: 1409 VKSMPVE-PNACVW 1421
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 123/273 (45%), Gaps = 44/273 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ +IR C + L +H ++GFQ +++V L MY +G + D+ K+F
Sbjct: 972 DGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVF 1031
Query: 83 DELPERNLVTWNVIITG-------------------------LVKWTGIIDGYSRMNRSN 117
+ + R+ V+WN +++G LV WT ++ ++R +
Sbjct: 1032 ERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHV 1091
Query: 118 EALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
E + LF RM +E + VL ++IHGY K GF + + V N
Sbjct: 1092 ETMELFGRMRMRGIGATAE-ALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENY-LFVKNS 1149
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-- 235
LI Y K G + +A LF + + KN+VSW +IS +A G EA F +++K
Sbjct: 1150 LICLYGKHGNVNAARILFLE--IKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEY 1207
Query: 236 --LKPN-RSWRI----------GEEGLKFFDKM 255
++PN SW GEE L+ F +M
Sbjct: 1208 PMVRPNVVSWSAVIGGFASKGQGEEALELFRRM 1240
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 85/196 (43%), Gaps = 12/196 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S T + ++ C L+ +LG ++H + ++ V L +MY G K+ + +F
Sbjct: 1248 NSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVF 1307
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+++ ++L++WN ++ GY A+ F +M + EP +T +AV
Sbjct: 1308 EKIENKDLISWNTMVA----------GYGIHGLGENAIRTFDQMIKDGF-EPDGVTFVAV 1356
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G V + + K + C++D + G + ASK+ + V+
Sbjct: 1357 LSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVE- 1415
Query: 203 KNLVSWTTIISGFAMH 218
N W +++ MH
Sbjct: 1416 PNACVWGALLNSCRMH 1431
Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDR-KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
++ YA G + A ++FE + ++ NL+ W +I+ HG +EA+E + RM+K+G+
Sbjct: 910 VVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGV 969
Query: 237 KPN 239
+
Sbjct: 970 SAD 972
>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g34400-like [Glycine max]
Length = 608
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/291 (31%), Positives = 148/291 (50%), Gaps = 27/291 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D + ++ C L LG + + G + Y+ +AL MY G L + ++F
Sbjct: 217 DEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRIF 276
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + R+++TWN +I+G Y++ ++EA++LF M TE ++IT+ AV
Sbjct: 277 DGMAARDVITWNAVISG----------YAQNGMADEAISLFHAMKEDCVTE-NKITLTAV 325
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + + I Y +RGF DI V+ LID YAKCG + SA ++F++ + +
Sbjct: 326 LSACATIGALDLGKQIDEYASQRGFQ-HDIFVATALIDMYAKCGSLASAQRVFKE--MPQ 382
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERM--QKVGLKPNRSWRIG-----------EEGL 249
KN SW +IS A HG KEA+ F+ M + G +PN +G EG
Sbjct: 383 KNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSACVHAGLVNEGY 442
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
+ FD M ++P I+HY C++D+L RAG L +A ++ +P + V +
Sbjct: 443 RLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEKPDKVTL 493
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 137/279 (49%), Gaps = 25/279 (8%)
Query: 33 TCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVT 92
+C L+ + H++ K+ S + +L MY G + + K+FDE+P R+LV+
Sbjct: 125 SCANLAVLSPARAAHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVS 184
Query: 93 WNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEV 152
WN +I GY++ + EA+ +F M + EP E+++++VL A + G++
Sbjct: 185 WNSMIA----------GYAKAGCAREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDL 234
Query: 153 RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTII 212
+ + G+ +RG + ++ + LI YAKCG + SA ++F+ + +++++W +I
Sbjct: 235 ELGRWVEGFVVERGMT-LNSYIGSALISMYAKCGDLGSARRIFDGMAA--RDVITWNAVI 291
Query: 213 SGFAMHGMGKEAVENFERMQKVGLKPNR---------SWRIGEEGL-KFFDKMVEECEVL 262
SG+A +GM EA+ F M++ + N+ IG L K D+ +
Sbjct: 292 SGYAQNGMADEAISLFHAMKEDCVTENKITLTAVLSACATIGALDLGKQIDEYASQRGFQ 351
Query: 263 PDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
DI LID+ + G L A+ V +P + N W
Sbjct: 352 HDIFVATALIDMYAKCGSLASAQRVFKEMPQK--NEASW 388
>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 874
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/304 (28%), Positives = 149/304 (49%), Gaps = 26/304 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S T S ++ CV +H+ K GF+ YV AL DMY +G ++ + +F
Sbjct: 389 NSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIF 448
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE-------PS 135
+ +++V+WN +ITG V D + ++ A R +Y + P+
Sbjct: 449 GSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPN 508
Query: 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
+T++ VLP + + IH Y K+ + D+ V + L+D YAKCGC+ + +F
Sbjct: 509 SVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSK-DVAVGSALVDMYAKCGCLNLSRTVF 567
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-----LKPNRSWRIG----- 245
E SV +N+++W +I + MHG G+EA++ F RM + G ++PN I
Sbjct: 568 EQMSV--RNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASL 625
Query: 246 ------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVV 299
+EGL F M + + P HY CL+D+L R+G++E+A + +PS + V
Sbjct: 626 SHSGMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVD 685
Query: 300 VWRT 303
W +
Sbjct: 686 AWSS 689
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 108/224 (48%), Gaps = 20/224 (8%)
Query: 18 LPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD 77
+PP D+F + +++ + NLG QLHA K G V +L +MY G +
Sbjct: 81 VPP--DNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLVNMYGKCGDIDA 138
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
+ ++FDE+ R+ V+WN +I+ R A+ LFR M E P+
Sbjct: 139 ARRVFDEITNRDDVSWN----------SMINAACRFEEWELAVHLFRLM-LLENVGPTSF 187
Query: 138 TILAVLPAIWK--NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
T+++V A NG + Q +H + + G + +N L+ YAK G ++ A LF
Sbjct: 188 TLVSVAHACSNLINGLLLGKQ-VHAFVLRNG--DWRTFTNNALVTMYAKLGRVYEAKTLF 244
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+ D K+LVSW TIIS + + +EA+ M + G++PN
Sbjct: 245 D--VFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPN 286
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/220 (27%), Positives = 99/220 (45%), Gaps = 21/220 (9%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76
PL P +S T ++ C L+ G ++HA K V V +AL DMY G L
Sbjct: 504 PLKP--NSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLN 561
Query: 77 DSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA----CEYT 132
S +F+++ RN++TWNV+I Y + EAL LFRRM
Sbjct: 562 LSRTVFEQMSVRNVITWNVLIM----------AYGMHGKGEEALKLFRRMVEEGDNNREI 611
Query: 133 EPSEITILAVLPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191
P+E+T +A+ ++ +G V L + K G H + CL+D + G I A
Sbjct: 612 RPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIEPTSDHYA-CLVDLLGRSGQIEEA 670
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENF 228
L + + K + +W++++ +H +G+ A +N
Sbjct: 671 YNLIKTMPSNMKKVDAWSSLLGACKIHQNLEIGEIAAKNL 710
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 99/212 (46%), Gaps = 14/212 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHA-VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
+ T + ++ C L G ++HA V + +V AL DMY + + +
Sbjct: 286 NGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLV 345
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + R + WN +I G Y R EA+ LF M P+ +T+ +
Sbjct: 346 FDGMFRRTIAVWNAMIAG----------YVRNEFDYEAIELFVEMVFELGLSPNSVTLSS 395
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VLPA + + + IH K GF D +V N L+D Y++ G I A +F S++
Sbjct: 396 VLPACVRCESFLDKEGIHSCVVKWGFEK-DKYVQNALMDMYSRMGRIEIARSIF--GSMN 452
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
RK++VSW T+I+G+ + G +A+ MQ+
Sbjct: 453 RKDIVSWNTMITGYVVCGRHDDALNLLHDMQR 484
>gi|224141397|ref|XP_002324059.1| predicted protein [Populus trichocarpa]
gi|222867061|gb|EEF04192.1| predicted protein [Populus trichocarpa]
Length = 505
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 94/295 (31%), Positives = 155/295 (52%), Gaps = 31/295 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++FT+ F+++ C T G Q+HA K G VYVN L +Y S + D+ K+F
Sbjct: 118 NNFTFPFVLKACATCLALEEGKQVHADIFKFGLDCDVYVNNNLVHLYGSCKRIWDACKVF 177
Query: 83 DELPERNLVTWNVIITGLVK--WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
DE+P R++V+WN +IT V+ W G +A+ F +M + EP+E T++
Sbjct: 178 DEMPVRSIVSWNSVITACVQNLWLG------------DAIWNFVKMKDFGF-EPNETTMV 224
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+L + G + + IH +RG + + L+D YAK G + A +F+ +
Sbjct: 225 IMLSLCAQIGNLSLGRWIHSQVIERGM-TLNCQLGTALVDMYAKSGDLGYAKLVFD--RM 281
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQK-VGLKPNRSWRIG-----------EEG 248
++KN+ +W+ +I G A HG GKE +E F +M++ V + PN +G +EG
Sbjct: 282 EKKNVWTWSAMILGLAQHGFGKEGLELFLKMKESVSICPNYVTFLGVLCACSHAGLVDEG 341
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++F +M + P + HYG ++DIL RAG LE+A +P Q + ++WRT
Sbjct: 342 FRYFYEMEHRHGIRPMVIHYGAMVDILGRAGNLEEAYNFLMDVPFQ-PDPILWRT 395
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 16/222 (7%)
Query: 97 ITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQ 156
+ L W +I GY+ + A+ +F RM E P+ T VL A + +
Sbjct: 81 LDSLPPWNFLIRGYASGDAPKNAIRVFHRMRK-EGVGPNNFTFPFVLKACATCLALEEGK 139
Query: 157 LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFA 216
+H K G + D++V+N L+ Y C I+ A K+F++ V +++VSW ++I+
Sbjct: 140 QVHADIFKFGLDC-DVYVNNNLVHLYGSCKRIWDACKVFDEMPV--RSIVSWNSVITACV 196
Query: 217 MHGMGKEAVENFERMQKVGLKPNRS---------WRIGEEGL-KFFDKMVEECEVLPDIK 266
+ +A+ NF +M+ G +PN + +IG L ++ V E + + +
Sbjct: 197 QNLWLGDAIWNFVKMKDFGFEPNETTMVIMLSLCAQIGNLSLGRWIHSQVIERGMTLNCQ 256
Query: 267 HYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRL 308
L+D+ ++G L A+ V + + NV W L L
Sbjct: 257 LGTALVDMYAKSGDLGYAKLVFDRMEKK--NVWTWSAMILGL 296
>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
Length = 708
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/314 (28%), Positives = 158/314 (50%), Gaps = 45/314 (14%)
Query: 28 SFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE 87
+ ++ V L+ + G +H K GF+++++V +L +Y G + + LF E+
Sbjct: 275 AVVLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKT 334
Query: 88 RNLVTWNVIITG-----------------------------LVKWTGIIDGYSRMNRSNE 118
+N+V+WN +I+ +V W+ +I G++ + E
Sbjct: 335 KNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEE 394
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
AL LFRRM + + + +TI +VL + + + IHG+ R +I V N L
Sbjct: 395 ALELFRRMQLAK-VKANSVTIASVLSVCAELAALHLGREIHGH-VVRSLMDGNILVGNGL 452
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
I+ Y K G + +FE ++ K+L+SW T+++G+ +HG+G+ A+ F++M K G +P
Sbjct: 453 INMYTKSGSFKEGNLVFEK--IENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEP 510
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ + EG + FDKM++E V P ++HY C++D+L RAG L++A +V
Sbjct: 511 DGVTFVAVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKV 570
Query: 288 ASGIPSQITNVVVW 301
+P + N VW
Sbjct: 571 VKSMPVE-PNACVW 583
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 123/273 (45%), Gaps = 44/273 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ +IR C + L +H ++GFQ +++V L MY +G + D+ K+F
Sbjct: 134 DGFTFPLVIRACALMGSRKLCRSVHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVF 193
Query: 83 DELPERNLVTWNVIITG-------------------------LVKWTGIIDGYSRMNRSN 117
+ + R+ V+WN +++G LV WT ++ ++R +
Sbjct: 194 ERMAVRSCVSWNTMVSGYALNYDCHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHV 253
Query: 118 EALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
E + LF RM +E + VL ++IHGY K GF + + V N
Sbjct: 254 ETMELFGRMRMRGIGATAE-ALAVVLSVSVDLAAFDEGKVIHGYVVKGGFENY-LFVKNS 311
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-- 235
LI Y K G + +A LF + + KN+VSW +IS +A G EA F +++K
Sbjct: 312 LICLYGKHGNVNAARILFLE--IKTKNIVSWNALISSYADLGWCDEAFAIFLQLEKTDEY 369
Query: 236 --LKPN-RSWRI----------GEEGLKFFDKM 255
++PN SW GEE L+ F +M
Sbjct: 370 PMVRPNVVSWSAVIGGFASKGQGEEALELFRRM 402
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 85/196 (43%), Gaps = 12/196 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S T + ++ C L+ +LG ++H + ++ V L +MY G K+ + +F
Sbjct: 410 NSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVF 469
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+++ ++L++WN ++ GY A+ F +M + EP +T +AV
Sbjct: 470 EKIENKDLISWNTMVA----------GYGIHGLGENAIRTFDQMIKDGF-EPDGVTFVAV 518
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G V + + K + C++D + G + ASK+ + V+
Sbjct: 519 LSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPVE- 577
Query: 203 KNLVSWTTIISGFAMH 218
N W +++ MH
Sbjct: 578 PNACVWGALLNSCRMH 593
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDR-KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
++ YA G + A ++FE + ++ NL+ W +I+ HG +EA+E + RM+K+G+
Sbjct: 72 VVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANVAHGYCEEALEIYCRMRKLGV 131
Query: 237 KPN 239
+
Sbjct: 132 SAD 134
>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
Length = 1113
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 149/292 (51%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT+S + C LS P +G Q+ K G S+ V ++ M+V ++D+ + F
Sbjct: 372 NHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAF 431
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ L E+NLV++N +DG R +A L + E S T ++
Sbjct: 432 ESLSEKNLVSYNT----------FLDGTCRNLNFEQAFKLLSEITERELG-VSAFTFASL 480
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + G +R + IH K G + + V N LI Y+KCG I +AS++F ++
Sbjct: 481 LSGVANVGSIRKGEQIHSQVVKLGLSC-NQPVCNALISMYSKCGSIDTASRVF--NFMEN 537
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+N++SWT++I+GFA HG +E F +M + G+KPN + EG +
Sbjct: 538 RNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRH 597
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ M E+ ++ P ++HY C++D+L RAG L A E + +P Q +V+VWRT
Sbjct: 598 FNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQ-ADVLVWRT 648
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 90/195 (46%), Gaps = 17/195 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL---GFLKDSS 79
D FT S + C L +LG QLH+ + G V +L DMY G + D
Sbjct: 268 DKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDV--ECSLVDMYAKCSADGSVDDCR 325
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
K+FD + + ++++W +ITG +K N + EA+ LF M + EP+ T
Sbjct: 326 KVFDRMEDHSVMSWTALITGYMK---------NCNLATEAINLFSEMITQGHVEPNHFTF 376
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+ A + R + + G KRG A + V+N +I + K + A + FE S
Sbjct: 377 SSAFKACGNLSDPRVGKQVLGQAFKRGL-ASNSSVANSVISMFVKSDRMEDAQRAFE--S 433
Query: 200 VDRKNLVSWTTIISG 214
+ KNLVS+ T + G
Sbjct: 434 LSEKNLVSYNTFLDG 448
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 111/227 (48%), Gaps = 29/227 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVS-LGFLKDSSK 80
+ + Y+ +IR C + +G K G F+S V V +L DM+V +++ K
Sbjct: 165 NDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYK 224
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD++ E N+VTW ++IT ++ G+ R EA+ F M + E + T+
Sbjct: 225 VFDKMSELNVVTWTLMITRCMQM-----GFPR-----EAIRFFLDMVLSGF-ESDKFTLS 273
Query: 141 AVLPAIWKNGEVRNCQL---IHGYGEKRGFNAFDIHVSNCLIDTYAKC---GCIFSASKL 194
+V A E+ N L +H + + G D+ S L+D YAKC G + K+
Sbjct: 274 SVFSAC---AELENLSLGKQLHSWAIRSGL-VDDVECS--LVDMYAKCSADGSVDDCRKV 327
Query: 195 FEDTSVDRKNLVSWTTIISGFAMH-GMGKEAVENFERMQKVG-LKPN 239
F+ ++ +++SWT +I+G+ + + EA+ F M G ++PN
Sbjct: 328 FD--RMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPN 372
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 89/203 (43%), Gaps = 28/203 (13%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
+FT++ L+ + G Q+H+ K+G + V AL MY G + +S++F+
Sbjct: 474 AFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFN 533
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
+ RN+++W +ITG K I L F +M E +P+E+T +A+L
Sbjct: 534 FMENRNVISWTSMITGFAKHGFAI----------RVLETFNQMIE-EGVKPNEVTYVAIL 582
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNAF--------DIHVSNCLIDTYAKCGCIFSASKLF 195
A G V G+ R FN+ + C++D + G + A + F
Sbjct: 583 SACSHVGLVS-----EGW---RHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFE-F 633
Query: 196 EDTSVDRKNLVSWTTIISGFAMH 218
+T + +++ W T + +H
Sbjct: 634 INTMPFQADVLVWRTFLGACRVH 656
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 19/224 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
DS T+S L+++C+ LG +HA + + + +L +Y G + +
Sbjct: 60 MDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDV 119
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE----PSEI 137
F+ + R +V V W+ ++ Y R +A+ +F E+ E P++
Sbjct: 120 FETM--RRFGKRDV-----VSWSAMMACYGNNGRELDAIKVF-----VEFLELGLVPNDY 167
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF-SASKLFE 196
AV+ A + V ++ G+ K G D+ V LID + K F +A K+F+
Sbjct: 168 CYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFD 227
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
S N+V+WT +I+ G +EA+ F M G + ++
Sbjct: 228 KMS--ELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDK 269
>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g02330-like [Glycine max]
Length = 852
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/299 (28%), Positives = 151/299 (50%), Gaps = 28/299 (9%)
Query: 16 SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL 75
S + P D FTY +++ C N GT++H K G +V +AL DMY G L
Sbjct: 435 STMEP--DDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGML 492
Query: 76 KDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS 135
++ K+ L E+ V+WN II+ G+S +S A F +M P
Sbjct: 493 MEAEKIHARLEEKTTVSWNSIIS----------GFSSQKQSENAQRYFSQMLEMGII-PD 541
Query: 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
T VL + + IH K ++ D+++++ L+D Y+KCG + + +F
Sbjct: 542 NYTYATVLDVCANMATIELGKQIHAQILKLQLHS-DVYIASTLVDMYSKCGNMQDSRLMF 600
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG---------- 245
E +++ V+W+ +I +A HG+G++A+ FE MQ + +KPN + I
Sbjct: 601 EKAP--KRDYVTWSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACAHMGY 658
Query: 246 -EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++GL +F KM+ + P ++HY C++D+L R+G++ +A ++ +P + + V+WRT
Sbjct: 659 VDKGLHYFQKMLSHYGLDPQMEHYSCMVDLLGRSGQVNEALKLIESMPFEADD-VIWRT 716
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 112/228 (49%), Gaps = 15/228 (6%)
Query: 9 QIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDM 68
+I++ S P D T++ +++ C + LG Q+H + ++GF++ V +AL DM
Sbjct: 124 EIFVRMRSLKIP-HDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDM 182
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y L D+ ++F E+PERNLV W+ +I GY + +R E L LF+ M
Sbjct: 183 YSKCKKLDDAFRVFREMPERNLVCWSAVIA----------GYVQNDRFIEGLKLFKDMLK 232
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
S+ T +V + + +HG+ K F A+D + +D YAKC +
Sbjct: 233 VGMG-VSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDF-AYDSIIGTATLDMYAKCERM 290
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
F A K+F ++ S+ II G+A G +A++ F+ +Q+ L
Sbjct: 291 FDAWKVF--NTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNL 336
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 99/218 (45%), Gaps = 14/218 (6%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD + S + C + G QLH + K G ++ V + DMY G L ++ +
Sbjct: 338 FDEISLSGALTACSVIKRHLEGIQLHGLAVKCGLGFNICVANTILDMYGKCGALMEACLI 397
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+E+ R+ V+WN II + I+ + L+LF M EP + T +
Sbjct: 398 FEEMERRDAVSWNAIIAAHEQNEEIV----------KTLSLFVSMLR-STMEPDDFTYGS 446
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
V+ A + IHG K G D V + L+D Y KCG + A K+ ++
Sbjct: 447 VVKACAGQQALNYGTEIHGRIIKSGM-GLDWFVGSALVDMYGKCGMLMEAEKIH--ARLE 503
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
K VSW +IISGF+ + A F +M ++G+ P+
Sbjct: 504 EKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPD 541
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 109/239 (45%), Gaps = 27/239 (11%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
T+S +++ C L N G Q+H GF +YV L Y + + K+FD
Sbjct: 7 LTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDR 66
Query: 85 LPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALALF 123
+P+R++++WN +I G +V W ++ Y + +++ +F
Sbjct: 67 MPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIF 126
Query: 124 RRMAACEYTEPSEITILAVLPAIWKNGEVRNCQL-IHGYGEKRGFNAFDIHVSNCLIDTY 182
RM + + P + AV+ E L +H + GF D+ + L+D Y
Sbjct: 127 VRMRSLKI--PHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFEN-DVVTGSALVDMY 183
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
+KC + A ++F + + +NLV W+ +I+G+ + E ++ F+ M KVG+ ++S
Sbjct: 184 SKCKKLDDAFRVFRE--MPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQS 240
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 104/221 (47%), Gaps = 18/221 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++TY+ ++ C ++ LG Q+HA K+ S VY+ + L DMY G ++DS +F
Sbjct: 541 DNYTYATVLDVCANMATIELGKQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMF 600
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++ P+R+ VTW+ +I Y+ +A+ LF M +P+ ++V
Sbjct: 601 EKAPKRDYVTWSAMIC----------AYAYHGLGEKAINLFEEMQLLN-VKPNHTIFISV 649
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN--CLIDTYAKCGCIFSASKLFEDTSV 200
L A G V + +H + + D + + C++D + G + A KL E
Sbjct: 650 LRACAHMGYVD--KGLHYFQKMLSHYGLDPQMEHYSCMVDLLGRSGQVNEALKLIESMPF 707
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
+ +++ W T++S M G + A + F + + L P S
Sbjct: 708 EADDVI-WRTLLSNCKMQGNVEVAEKAFNSL--LQLDPQDS 745
>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 865
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 155/310 (50%), Gaps = 40/310 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T S ++ C L G ++H + G +++V +AL +Y ++++ +F
Sbjct: 264 NPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVF 323
Query: 83 DELPERNLVTWNVIITGLVK-------------------------WTGIIDGYSRMNRSN 117
D +P R++V+WN ++T K W +I G RS
Sbjct: 324 DLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSE 383
Query: 118 EALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
EA+ +FR+M + +P+EITI ++LPA + +R + IH Y R + D+ +
Sbjct: 384 EAVEMFRKMQKMGF-KPNEITISSILPACSFSENLRMGKEIHCY-VFRHWKVGDLTSTTA 441
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
L+ YAKCG + + +F+ + RK++V+W T+I AMHG GKEA+ F++M ++
Sbjct: 442 LLYMYAKCGDLNLSRNVFD--MMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQ 499
Query: 238 PNR-----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
PN R+ EEG++ F+ M + V PD HY C++DI RAGRL +A +
Sbjct: 500 PNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYK 559
Query: 287 VASGIPSQIT 296
G+P + T
Sbjct: 560 FIQGMPMEPT 569
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 105/228 (46%), Gaps = 45/228 (19%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
++H ++ G S V+V AL Y ++ + ++FD+L R++V+W + + VK
Sbjct: 185 EVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKC- 243
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
G+ R + + +FR M +P+ +T+ ++LPA + ++++ + IHG+ +
Sbjct: 244 ----GFPR-----KGMDVFREMGW-SGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVR 293
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE---------------------------- 196
G ++ V + L+ YAKC + A +F+
Sbjct: 294 HGM-VVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFS 352
Query: 197 ---DTSVD--RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
S D R + +W +I G +G +EAVE F +MQK+G KPN
Sbjct: 353 LFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPN 400
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 14/170 (8%)
Query: 70 VSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC 129
+++G + +LFD +P+ + T + +I+ L + SNEA+ ++ +
Sbjct: 109 LNVGDFNRARQLFDNIPQPDPTTCSTLISAL----------TTHGLSNEAIKIYSSLQE- 157
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
+P LA A +G+ + +H + G + D+ V N LI Y KC C+
Sbjct: 158 RGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMS-DVFVGNALIHAYGKCKCVE 216
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
A ++F+D V +++VSWT++ S + G ++ ++ F M G+KPN
Sbjct: 217 GARRVFDDLVV--RDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPN 264
>gi|15233645|ref|NP_195514.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213618|sp|Q9SZK1.1|PP355_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g38010
gi|4467107|emb|CAB37541.1| putative protein [Arabidopsis thaliana]
gi|7270784|emb|CAB80466.1| putative protein [Arabidopsis thaliana]
gi|332661463|gb|AEE86863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 136/264 (51%), Gaps = 25/264 (9%)
Query: 41 NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGL 100
+LG +H + K + AL DMYV L D+ ++F EL +++ V+WN +I+GL
Sbjct: 221 SLGKGIHGLILKRASLISLETGNALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGL 280
Query: 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHG 160
V RS EA+ LF M +P + +VL A G V + + +H
Sbjct: 281 V----------HCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHGRWVHE 330
Query: 161 YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGM 220
Y G +D H+ ++D YAKCG I +A ++F + KN+ +W ++ G A+HG
Sbjct: 331 YILTAGIK-WDTHIGTAIVDMYAKCGYIETALEIF--NGIRSKNVFTWNALLGGLAIHGH 387
Query: 221 GKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKM-VEECEVLPDIKHY 268
G E++ FE M K+G KPN + +EG ++F KM E + P ++HY
Sbjct: 388 GLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGRRYFHKMKSREYNLFPKLEHY 447
Query: 269 GCLIDILERAGRLEQAEEVASGIP 292
GC+ID+L RAG L++A E+ +P
Sbjct: 448 GCMIDLLCRAGLLDEALELVKAMP 471
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 156/332 (46%), Gaps = 42/332 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ + + C S G Q+H + +K+GF +YV +L Y G +++ K+F
Sbjct: 105 DMFTFPPVFKACGKFSGIREGKQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVF 164
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E+P R++V+ WTGII G++R EAL F +M EP+ T + V
Sbjct: 165 GEMPVRDVVS----------WTGIITGFTRTGLYKEALDTFSKMD----VEPNLATYVCV 210
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + + G + + IHG KR + + N LID Y KC + A ++F + +++
Sbjct: 211 LVSSGRVGCLSLGKGIHGLILKRA-SLISLETGNALIDMYVKCEQLSDAMRVFGE--LEK 267
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQ-KVGLKPN----RSWRIGEEGLKFFD--KM 255
K+ VSW ++ISG KEA++ F MQ G+KP+ S L D +
Sbjct: 268 KDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHGRW 327
Query: 256 VEECEVLPDIK---HYG-CLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLIN 311
V E + IK H G ++D+ + G +E A E+ +GI S+ NV W L I+
Sbjct: 328 VHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSK--NVFTWNALLGGLAIH 385
Query: 312 SYFFSPITLNSQRLFFFPAALYALTQILGFKP 343
+ + L +F + LGFKP
Sbjct: 386 GHGL-------ESLRYFEEMVK-----LGFKP 405
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASK 193
P T V A K +R + IHG K GF DI+V N L+ Y CG +A K
Sbjct: 104 PDMFTFPPVFKACGKFSGIREGKQIHGIVTKMGFYD-DIYVQNSLVHFYGVCGESRNACK 162
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+F + V +++VSWT II+GF G+ KEA++ F +M ++PN
Sbjct: 163 VFGEMPV--RDVVSWTGIITGFTRTGLYKEALDTFSKMD---VEPN 203
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 14/190 (7%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
+ + S + P D + ++ C +L + G +H G + ++ TA+ DMY
Sbjct: 296 MQTSSGIKP--DGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAK 353
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY 131
G+++ + ++F+ + +N+ TWN ++ GL I G+ E+L F M +
Sbjct: 354 CGYIETALEIFNGIRSKNVFTWNALLGGLA-----IHGHGL-----ESLRYFEEMVKLGF 403
Query: 132 TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF-DIHVSNCLIDTYAKCGCIFS 190
+P+ +T LA L A G V + + R +N F + C+ID + G +
Sbjct: 404 -KPNLVTFLAALNACCHTGLVDEGRRYFHKMKSREYNLFPKLEHYGCMIDLLCRAGLLDE 462
Query: 191 ASKLFEDTSV 200
A +L + V
Sbjct: 463 ALELVKAMPV 472
>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15130-like [Glycine max]
Length = 586
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 154/298 (51%), Gaps = 35/298 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQ--SHVYVNTALGDMYVSLGFLKDSSK 80
D +TYS ++ C G Q+HA + GF + V AL D+YV + ++ K
Sbjct: 104 DGYTYSSSLKACSCADAAGEGMQIHAALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARK 163
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI--T 138
+FD + E+++++W+ +I G Y++ + EA+ LFR + + + +
Sbjct: 164 VFDRIEEKSVMSWSTLILG----------YAQEDNLKEAMDLFRELRESRHRMDGFVLSS 213
Query: 139 ILAVLP--AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
I+ V A+ + G + +H Y K + ++ V+N ++D Y KCG A LF
Sbjct: 214 IIGVFADFALLEQG-----KQMHAYTIKVPYGLLEMSVANSVLDMYMKCGLTVEADALFR 268
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG----------- 245
+ +N+VSWT +I+G+ HG+G +AVE F MQ+ G++P+ +
Sbjct: 269 EML--ERNVVSWTVMITGYGKHGIGNKAVELFNEMQENGIEPDSVTYLAVLSACSHSGLI 326
Query: 246 EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+EG K+F + ++ P ++HY C++D+L R GRL++A+ + +P + NV +W+T
Sbjct: 327 KEGKKYFSILCSNQKIKPKVEHYACMVDLLGRGGRLKEAKNLIEKMPLK-PNVGIWQT 383
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 104/218 (47%), Gaps = 22/218 (10%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
+ +S + ++ C + G Q+H V K+GF V ++ DMY G + ++++
Sbjct: 1 MSESRLLNKILNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAAR 60
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM-----AACEYTEPS 135
+F+ LP RN+++WN +I GY+ EAL LFR M YT S
Sbjct: 61 VFNTLPVRNVISWNAMIA----------GYTNERNGEEALNLFREMREKGEVPDGYTYSS 110
Query: 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
+ + A + ++ + HG+ V+ L+D Y KC + A K+F
Sbjct: 111 SLKACSCADAAGEGMQIHAALIRHGFP-----YLAQSAVAGALVDLYVKCRRMAEARKVF 165
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
+ ++ K+++SW+T+I G+A KEA++ F +++
Sbjct: 166 D--RIEEKSVMSWSTLILGYAQEDNLKEAMDLFRELRE 201
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 17/158 (10%)
Query: 158 IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAM 217
+HG EK GF+ + V N +ID Y+KCG + A+++F V +N++SW +I+G+
Sbjct: 26 VHGVVEKLGFDVIXV-VGNSMIDMYSKCGMVGEAARVFNTLPV--RNVISWNAMIAGYTN 82
Query: 218 HGMGKEAVENFERMQKVG-----------LKPNRSWRIGEEGLKFFDKMVEEC-EVLPDI 265
G+EA+ F M++ G LK EG++ ++ L
Sbjct: 83 ERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGEGMQIHAALIRHGFPYLAQS 142
Query: 266 KHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
G L+D+ + R+ +A +V I + +V+ W T
Sbjct: 143 AVAGALVDLYVKCRRMAEARKVFDRIEEK--SVMSWST 178
>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
lyrata]
Length = 1111
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 158/324 (48%), Gaps = 39/324 (12%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
+ S + L P D++T +FL++ C L G Q+H + + GF + +V T L +Y
Sbjct: 106 LSSGNGLKP--DNYTVNFLVQACTGLGMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAE 163
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGY 110
LG L K+F+ + + V ++T + W +I GY
Sbjct: 164 LGCLDSCHKVFNSVSYPDFVCRTAMVTACARCGDVAFARKLFEGMPEKDPIAWNAMISGY 223
Query: 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF 170
+++ S EAL LF M E + + +++++VL A + G + + H Y E+
Sbjct: 224 AQVGESREALNLFHLMQ-LEGVKVNGVSMISVLSACTQLGALDQGRWAHSYIERNKIK-I 281
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
+ + L+D YAKCG + A ++F ++ KN+ +W++ ++G AM+G G++ ++ F
Sbjct: 282 TVRLGTTLVDLYAKCGDMDKAMEVF--WGMEEKNVYTWSSALNGLAMNGFGEKCLKLFSL 339
Query: 231 MQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
M++ G+ PN + +EG K FD M E + P + HYGCL+D+ RAG
Sbjct: 340 MKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQLDHYGCLVDLYARAG 399
Query: 280 RLEQAEEVASGIPSQITNVVVWRT 303
RLE A + +P + + VW +
Sbjct: 400 RLEDAVSIIQQMPMK-AHAAVWSS 422
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 145/289 (50%), Gaps = 27/289 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T+ +I CV G +H + K G V V AL ++Y G L S KLF
Sbjct: 636 NEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLF 695
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++L +NLV+WN +I ++ G+ + E LA F M+ +P + T LAV
Sbjct: 696 EDLSVKNLVSWNTMIVIHLQ-NGL---------AEEGLAYF-NMSRWVGLKPDQATFLAV 744
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF-EDTSVD 201
L G VR Q IHG GFNA + ++ L+D YAK G + +S +F E TS D
Sbjct: 745 LRVCEDIGVVRLSQGIHGLIMFCGFNA-NTCITTALLDLYAKLGRLEDSSTVFLEITSPD 803
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLK 250
++WT +++ +A HG G++A+++FE M GL P+ + EEG
Sbjct: 804 S---MAWTAMLAAYATHGYGRDAIKHFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRY 860
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVV 299
+F+ M + + P + HY C++D++ R+G L+ A + +P + ++ V
Sbjct: 861 YFETMSKRYRIEPRLDHYSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGV 909
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 92/191 (48%), Gaps = 17/191 (8%)
Query: 108 DGYSRMNRSNEALALFRRMAACEYT-EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRG 166
DG + + E L+ RM E P+E+T L+++ A G IHG K G
Sbjct: 611 DGRGYLGKCFEVLS---RMMRSEVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSG 667
Query: 167 FNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVE 226
++ V N L++ Y K G + S+ KLFED SV KNLVSW T+I +G+ +E +
Sbjct: 668 V-LEEVKVVNALMNLYGKTGDLISSCKLFEDLSV--KNLVSWNTMIVIHLQNGLAEEGLA 724
Query: 227 NFERMQKVGLKPNRS-----WRIGEE-GLKFFDKMVEECEVLPDIKHYGC----LIDILE 276
F + VGLKP+++ R+ E+ G+ + + + C L+D+
Sbjct: 725 YFNMSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYA 784
Query: 277 RAGRLEQAEEV 287
+ GRLE + V
Sbjct: 785 KLGRLEDSSTV 795
>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Brachypodium distachyon]
Length = 646
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 151/292 (51%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DSFT S ++ + G +LH ++ GF V+V ++L DMY + S K+F
Sbjct: 172 DSFTLSSVLPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVF 231
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D LP R+ + WN ++ G + G +D EAL LFRRM +P +T ++
Sbjct: 232 DNLPVRDAILWNSMLAGCAQ-NGSVD---------EALGLFRRMLH-SGIKPMPVTFSSL 280
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+PA + + +H Y + GF+ ++ +S+ LID Y KCG + A ++F+ +
Sbjct: 281 IPACGNLASLLLGKQLHAYVIRGGFDG-NVFISSSLIDMYCKCGNVSIARRIFD--RIQS 337
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
++VSWT +I G A+HG +EA+ F+RM+ LKPN + ++G K+
Sbjct: 338 PDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKY 397
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ M + ++P ++H+ L D L R G+LE+A SG+ + T VW T
Sbjct: 398 FNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPT-ASVWST 448
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 109/222 (49%), Gaps = 28/222 (12%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG--------------FLK 76
+++C L LG LHA+ + G + + AL ++Y L L+
Sbjct: 65 LKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLE 124
Query: 77 DSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE 136
K+FDE+PE+++V+WN ++ G + R EAL L R M + +P
Sbjct: 125 SVRKVFDEMPEKDVVSWNTLVLGCAE----------SGRHGEALGLVREMWR-DGCKPDS 173
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
T+ +VLP + +VR +HG+ + GF+ D+ V + LID YA C + K+F+
Sbjct: 174 FTLSSVLPIFAEGADVRRGMELHGFATRNGFHD-DVFVGSSLIDMYANCTRTDYSVKVFD 232
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
+ V ++ + W ++++G A +G EA+ F RM G+KP
Sbjct: 233 NLPV--RDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKP 272
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 72/138 (52%), Gaps = 13/138 (9%)
Query: 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF 74
HS + P+ T+S LI C L+ LG QLHA + GF +V+++++L DMY G
Sbjct: 267 HSGIKPM--PVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGN 324
Query: 75 LKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134
+ + ++FD + ++V+ WT +I G++ + EAL LF RM +P
Sbjct: 325 VSIARRIFDRIQSPDIVS----------WTAMIMGHALHGPAREALVLFDRMELGNL-KP 373
Query: 135 SEITILAVLPAIWKNGEV 152
+ IT LAVL A G V
Sbjct: 374 NHITFLAVLTACSHAGLV 391
>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 491
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 104/375 (27%), Positives = 160/375 (42%), Gaps = 97/375 (25%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P DSFTYSFLI+ + +H+ K+G +V AL D Y G D+
Sbjct: 2 PRRDSFTYSFLIKALSAAGVAPV-RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDAR 60
Query: 80 K-------------------------------LFDELPERNLVTWNVIITG--------- 99
K LFDE+PE++ V+WN I+ G
Sbjct: 61 KVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEA 120
Query: 100 ------------LVKWTGIIDGYSRMNRSNEALALFRRM------------AACEY---- 131
+V W+ ++ GY + A +F +M +AC
Sbjct: 121 AFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLV 180
Query: 132 --------------TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
E ++++L A ++G + + IH Y KR HV N
Sbjct: 181 DEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGR-STHVCNA 239
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
LID + KCGC+ A +F DT +K+ VSW +II GFAMHG G +A+E F +M++ G
Sbjct: 240 LIDMFCKCGCVNRADYVF-DTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFN 298
Query: 238 PNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
P+ I +EG + F M + ++P I+HYGC+ID+L R G +++A +
Sbjct: 299 PDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVD 358
Query: 287 VASGIPSQITNVVVW 301
+ +P + N V+W
Sbjct: 359 LIKSMPWE-PNEVIW 372
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 15/191 (7%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD-ELPER 88
++ C +LG ++H K +V AL DM+ G + + +FD E ++
Sbjct: 205 ILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQK 264
Query: 89 NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148
+ V+WN II G++ ++AL LF +M + P +T++ VL A
Sbjct: 265 DSVSWN----------SIIGGFAMHGHGDKALELFAQMKQQGFN-PDAVTMINVLSACTH 313
Query: 149 NGEVRNCQLIHGYGEKRGFNAF-DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
G V + H +R + I C+ID + G I A L + + N V
Sbjct: 314 MGFVDEGRR-HFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWE-PNEVI 371
Query: 208 WTTIISGFAMH 218
W +++S +H
Sbjct: 372 WGSLLSACRLH 382
>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
Length = 734
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/265 (32%), Positives = 142/265 (53%), Gaps = 25/265 (9%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
++ C L + G ++H + ++G S+V V AL MY + +S +FDEL R
Sbjct: 269 LQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQ 328
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
V+WN +I G + +G S +A+ LF RM E +P T+++V+PA+
Sbjct: 329 VSWNAMILGCAQ-----NGCS-----EDAVRLFTRMQ-LENVKPDSFTLVSVIPALADIS 377
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
+ + IHGY + + D++V LID YAKCG + A LF S +++++W
Sbjct: 378 DPLQARWIHGYSIRLHLDQ-DVYVLTALIDMYAKCGRVNIARILF--NSARERHVITWNA 434
Query: 211 IISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEEC 259
+I G+ HG GK AVE FE M+ +G+ PN + + +EG ++F M E+
Sbjct: 435 MIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDY 494
Query: 260 EVLPDIKHYGCLIDILERAGRLEQA 284
+ P ++HYG ++D+L RAG+L++A
Sbjct: 495 GLEPGMEHYGTMVDLLGRAGKLDEA 519
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 110/223 (49%), Gaps = 15/223 (6%)
Query: 14 SHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG 73
S + PP+ +FT L++ C G +HA + G S TAL +MY
Sbjct: 51 SSAGAPPVLRTFTS--LLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCR 108
Query: 74 FLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE 133
D+ ++FD +P R+ V WN ++ G + +G +RM A+ + RM E
Sbjct: 109 RPADARRVFDRMPVRDRVAWNALVAGYAR-----NGLARM-----AMEMVVRMQEEEGER 158
Query: 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASK 193
P IT+++VLPA + C+ H + + G ++V+ ++D Y KCG I +A
Sbjct: 159 PDSITLVSVLPACANARALAACREAHAFAIRSGLEEL-VNVATAILDAYCKCGDIRAARV 217
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
+F+ + KN VSW +I G+A +G +EA+ F RM + G+
Sbjct: 218 VFD--WMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGV 258
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 57/130 (43%), Gaps = 11/130 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DSFT +I +S P +H ++ VYV TAL DMY G + + LF
Sbjct: 362 DSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILF 421
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ ER+++TWN +I GY A+ LF M + P+E T L+V
Sbjct: 422 NSARERHVITWN----------AMIHGYGSHGFGKAAVELFEEMKSIGIV-PNETTFLSV 470
Query: 143 LPAIWKNGEV 152
L A G V
Sbjct: 471 LSACSHAGLV 480
>gi|15226463|ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090
gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis thaliana]
gi|330252028|gb|AEC07122.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 597
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 144/290 (49%), Gaps = 35/290 (12%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
F+ F+++ L+ CV L Q H GF S+V ++ ++ D Y G ++ + +
Sbjct: 177 FNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRC 236
Query: 82 FDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEAL 120
FDE+ +++ W +I+G K WT +I GY R N AL
Sbjct: 237 FDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRAL 296
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LFR+M A +P + T + L A +R+ + IHGY + I +S+ LID
Sbjct: 297 DLFRKMIALG-VKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISS-LID 354
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
Y+K G + ++ ++F D+ + V W T+IS A HG+G +A+ + M K ++PNR
Sbjct: 355 MYSKSGSLEASERVFRICD-DKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNR 413
Query: 241 SWRI-----------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
+ + EEGL++F+ M + ++PD +HY CLID+L RAG
Sbjct: 414 TTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAG 463
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 144/339 (42%), Gaps = 72/339 (21%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSSKLFDELPER 88
L++ C G +H GF+ + ++ L MY+ G D+ K+FD++ R
Sbjct: 52 LLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLR 111
Query: 89 NLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALAL---FR 124
NL +WN +++G VK W ++ GY++ +EAL FR
Sbjct: 112 NLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFR 171
Query: 125 R-------------MAACEYTEPSEITILA---VLPAIWKNGEVRNCQLIHGYGE----- 163
R + AC + ++ A VL A + + V +C +I Y +
Sbjct: 172 RSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQME 231
Query: 164 --KRGFNAF---DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218
KR F+ DIH+ LI YAK G + +A KLF + KN VSWT +I+G+
Sbjct: 232 SAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLF--CEMPEKNPVSWTALIAGYVRQ 289
Query: 219 GMGKEAVENFERMQKVGLKPNR--------------SWRIGEEGLKFFDKMVEECEVLPD 264
G G A++ F +M +G+KP + S R G+E + + V P+
Sbjct: 290 GSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRT----NVRPN 345
Query: 265 IKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
LID+ ++G LE +E V I + V W T
Sbjct: 346 AIVISSLIDMYSKSGSLEASERVFR-ICDDKHDCVFWNT 383
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 45/221 (20%), Positives = 92/221 (41%), Gaps = 18/221 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT+S + +++ G ++H + + + V ++L DMY G L+ S ++F
Sbjct: 310 EQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVF 369
Query: 83 DELPER-NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
++ + V WN +I+ L ++ ++AL + M +P+ T++
Sbjct: 370 RICDDKHDCVFWNTMISAL----------AQHGLGHKALRMLDDMIKFR-VQPNRTTLVV 418
Query: 142 VLPAIWKNGEVRN-CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+L A +G V + + G H + CLID + GC + E+
Sbjct: 419 ILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYA-CLIDLLGRAGCFKELMRKIEEMPF 477
Query: 201 DRKNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKP 238
+ + W I+ +HG +GK+A + ++ P
Sbjct: 478 EPDKHI-WNAILGVCRIHGNEELGKKAADELIKLDPESSAP 517
>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
Length = 770
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 87/277 (31%), Positives = 154/277 (55%), Gaps = 18/277 (6%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L + FT + ++ C T NLG Q+ A K+G Q+++ V + +Y+ G ++ +
Sbjct: 278 LPNEFTLTSVMSLCGTRLDLNLGKQVQAFCFKIGCQTNIPVKNSTMYLYLRKGETDEAMR 337
Query: 81 LFDELPERNLVTWNVIITGLVKW--TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
F+E+ + +++TWN +I+G + T D ++R +R +AL +FR + +P T
Sbjct: 338 FFEEMDDVSIITWNAMISGYAQIMETAKDDLHAR-SRGFQALKVFRNLKR-SAMKPDLFT 395
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
++L + + IH K GF + D+ V++ L++ Y KCGCI A+K F +
Sbjct: 396 FSSILSVCSSMMALEQGEQIHAQTIKTGFLS-DVVVNSALVNMYNKCGCIEDATKAFVEM 454
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR----------SWR-IGEE 247
S+ + LV+WT++ISG++ HG +EA++ FE M+ G++PN S+ + E+
Sbjct: 455 SI--RTLVTWTSMISGYSQHGRPQEAIQLFEDMRFAGVRPNEITFVCVLSACSYAGLAEK 512
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
+FD M EE ++ P + HYGC++D+ R GRL+ A
Sbjct: 513 AEHYFDMMKEEYKIEPIVDHYGCMVDMFVRLGRLDDA 549
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 95/195 (48%), Gaps = 18/195 (9%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
S Y L+ CV LH K G + ++V T+L + Y+ G +D+ LFD
Sbjct: 78 SAMYVPLLHVCVETGSLGGARALHGHMVKTGTSADMFVATSLVNAYMRCGASQDARSLFD 137
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM-AACEYTEPSEITILAV 142
++PE+N+VTW +IT GY+ ++ EAL +F M A Y PS T+ A+
Sbjct: 138 QMPEKNVVTWTALIT----------GYTVNSQLLEALEVFVEMLEAGRY--PSHYTLGAM 185
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDI-HVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A + +HGY K + A I + N L YAK G + SA + F V
Sbjct: 186 LNACSASNNADLGSQVHGYTIK--YRALSITSIGNSLCRMYAKSGSLESAMRAFR--MVP 241
Query: 202 RKNLVSWTTIISGFA 216
KN+++WTT+IS A
Sbjct: 242 DKNVITWTTMISACA 256
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 107/225 (47%), Gaps = 20/225 (8%)
Query: 16 SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL 75
S + P D FT+S ++ C ++ G Q+HA K GF S V VN+AL +MY G +
Sbjct: 387 SAMKP--DLFTFSSILSVCSSMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCI 444
Query: 76 KDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS 135
+D++K F E+ R LVTW +I+ GYS+ R EA+ LF M P+
Sbjct: 445 EDATKAFVEMSIRTLVTWTSMIS----------GYSQHGRPQEAIQLFEDMRFAG-VRPN 493
Query: 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN--CLIDTYAKCGCIFSASK 193
EIT + VL A G + H + + + V + C++D + + G + A
Sbjct: 494 EITFVCVLSACSYAGLAEKAE--HYFDMMKEEYKIEPIVDHYGCMVDMFVRLGRLDDAFA 551
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
T + N W+++++G HG + A +R+ + L+P
Sbjct: 552 FIRRTGFE-PNEAIWSSLVAGCRSHGNMELAFYAADRL--IELRP 593
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 118 EALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
EA+A+ R E + +L + G + + +HG+ K G +A D+ V+
Sbjct: 65 EAMAMLR-----EGKTVQSAMYVPLLHVCVETGSLGGARALHGHMVKTGTSA-DMFVATS 118
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
L++ Y +CG A LF+ + KN+V+WT +I+G+ ++ EA+E F M + G
Sbjct: 119 LVNAYMRCGASQDARSLFD--QMPEKNVVTWTALITGYTVNSQLLEALEVFVEMLEAGRY 176
Query: 238 PN 239
P+
Sbjct: 177 PS 178
>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/291 (30%), Positives = 147/291 (50%), Gaps = 27/291 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ C L LG + + + + Y+ +AL DMY G L + ++F
Sbjct: 228 DEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVF 287
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +P +++VTWN IIT GY++ SNEA+ LF M P +T++ V
Sbjct: 288 DSMPNKDVVTWNAIIT----------GYAQNGASNEAIVLFNGMREAG-PHPDRVTMIEV 336
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + + + + ++G D++V++ LID YAKCG + A ++FE S+
Sbjct: 337 LSACSTIGALDLGKWVETHASEKGLQ-HDVYVASALIDMYAKCGSLDDAVRVFE--SMPH 393
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVG--LKPNRSWRIG-----------EEGL 249
KN VSW +IS A HG +EA+ F RM K ++PN IG +EG
Sbjct: 394 KNEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGR 453
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
+ F+ M ++P ++HY C++D+ RAG L +A ++ +P + +V+
Sbjct: 454 QLFESMNLSFGLVPKVEHYSCMVDLCARAGLLYEAWDLIKKMPGKPDEIVL 504
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 145/291 (49%), Gaps = 26/291 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++FTY FL C + G H + K G YVN +L MY G + + K+F
Sbjct: 127 NNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVF 186
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ +R+LV+WN +I+ GYS+M + EA+ LF M E EP E+T+++V
Sbjct: 187 DEMGDRDLVSWNSMIS----------GYSKMGFTKEAIGLFMEMRE-EGFEPDEMTLVSV 235
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G++ + + G+ ++ + ++ + LID Y KCG + SA ++F+ S+
Sbjct: 236 LGACGDLGDLGLGRWVEGFVLEKKMEV-NSYMGSALIDMYGKCGDLISARRVFD--SMPN 292
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---------SWRIGEEGL-KFF 252
K++V+W II+G+A +G EA+ F M++ G P+R IG L K+
Sbjct: 293 KDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIEVLSACSTIGALDLGKWV 352
Query: 253 DKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ E + D+ LID+ + G L+ A V +P + N V W
Sbjct: 353 ETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHK--NEVSWNA 401
>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
Length = 604
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/311 (29%), Positives = 153/311 (49%), Gaps = 47/311 (15%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
F+ +++ C L + G Q+H K +V ++ MY+ G ++ + ++FD
Sbjct: 110 FSIPSVLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDR 169
Query: 85 LPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALALF 123
+P R++V+WN +I G LV +IDGY + E L+L
Sbjct: 170 MPNRDVVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGK-----EMLSLG 224
Query: 124 RRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183
R P I++VL AI G V + +H Y + + LID Y+
Sbjct: 225 LR--------PDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALIDMYS 276
Query: 184 KCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWR 243
KCG I +A +F S R+N+ W ++ISG A+HG+ +EA++ F M+++ ++PN
Sbjct: 277 KCGYIENAYHVFRSIS-HRRNIGDWNSMISGLAIHGLAREALDIFVEMERMDIEPNEITF 335
Query: 244 IG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+G EEG +F+ M E+ +++P I+HYGC+ID+ RAGRLE A V +P
Sbjct: 336 LGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGVIQNMP 395
Query: 293 SQITNVVVWRT 303
+ +++ W+
Sbjct: 396 FE-ADLLAWKA 405
>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
Length = 716
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 154/314 (49%), Gaps = 41/314 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D + S ++ L P +G Q+H K G +V +AL DMY + S +F
Sbjct: 209 DGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVF 268
Query: 83 DELPERNLVTWNVIITGL-----------------------VKWTGIIDGYSRMNRSNEA 119
+E+ E ++ N ++TGL V WT +I S+ + EA
Sbjct: 269 NEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEA 328
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRG-FNAFDIHVSNCL 178
L LFR M E +P+ +TI +LPA + + + H + + G FN D++V + L
Sbjct: 329 LELFREMQI-EGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFN--DVYVGSAL 385
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
ID YAKCG + AS+L D +R NLVSW ++++G+AMHG EA+ FE MQ+ G KP
Sbjct: 386 IDMYAKCGRML-ASRLCFDMMPNR-NLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKP 443
Query: 239 NR-----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ + EEG +FD M V ++HY C++ +L R+GRLE+A +
Sbjct: 444 DHVSFTCVLSACTQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAM 503
Query: 288 ASGIPSQITNVVVW 301
+P + + VW
Sbjct: 504 IKQMPFE-PDSCVW 516
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 120/275 (43%), Gaps = 62/275 (22%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLH--AVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
DS +I+TC LS G Q+H A+ S +G S V ++L MYV LKD+
Sbjct: 73 DSRVLPTVIKTCAALSALQTGKQMHCFALVSGLGLDSVVL--SSLLHMYVQFDHLKDARN 130
Query: 81 LFDELPERNLVTWNVIIT-------------------------GLVKWTGIIDGYSRMNR 115
+FD+LP+ +VT + +I+ LV W G+I G++R
Sbjct: 131 VFDKLPQPGVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGS 190
Query: 116 SNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS 175
+A+ +F+ M E +P ++ +VLPA+ IH Y K+G D V
Sbjct: 191 YLDAVLMFQNMHL-EGLKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGP-DKFVV 248
Query: 176 NCLIDTYAKCGCIFSASKLFED-------------TSVDRK------------------N 204
+ LID Y KC C S +F + T + R N
Sbjct: 249 SALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLN 308
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+VSWT++I+ + +G EA+E F MQ G+KPN
Sbjct: 309 VVSWTSMIASCSQNGKDMEALELFREMQIEGVKPN 343
>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 881
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/309 (28%), Positives = 156/309 (50%), Gaps = 30/309 (9%)
Query: 16 SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL 75
S + P D +T+ +++ C N G ++H K G +V +A+ DMY G L
Sbjct: 467 STMEP--DDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGML 524
Query: 76 KDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS 135
++ K+ + L ER V+WN II+ G+S + AL+ F RM P
Sbjct: 525 VEAEKIHERLEERTTVSWNSIIS----------GFSSEKQGENALSYFSRMLQVGVI-PD 573
Query: 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
T VL V + IHG K ++ D+++++ ++D Y+KCG + + +F
Sbjct: 574 NFTYATVLDICANLATVELGKQIHGQILKLQLHS-DVYIASTIVDMYSKCGNMQDSRIMF 632
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG---------- 245
E +++ V+W+ +I +A HG+G++A++ FE MQ +KPN + I
Sbjct: 633 EKAP--KRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTIFISVLRACAHMGF 690
Query: 246 -EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT- 303
++GL +F +M + P ++HY C++D+L R+G++ +A E+ +P + + V+WRT
Sbjct: 691 VDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQVNEALELIESMPFEADD-VIWRTL 749
Query: 304 -GFLRLLIN 311
G RL N
Sbjct: 750 LGICRLQGN 758
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 109/237 (45%), Gaps = 22/237 (9%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
+++ LQ+ Y+ FD + S + C + G QLH + K G ++ V
Sbjct: 359 IFRSLQKSYLD--------FDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVA 410
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
+ DMY G L ++ +FD++ ++ V+WN II + + E LAL
Sbjct: 411 NTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIA----------AHEQNEHVEETLAL 460
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
F M EP + T +V+ A + +HG K G D V + +ID Y
Sbjct: 461 FVSMLR-STMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGM-GLDWFVGSAIIDMY 518
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
KCG + A K+ E ++ + VSW +IISGF+ G+ A+ F RM +VG+ P+
Sbjct: 519 CKCGMLVEAEKIHE--RLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPD 573
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/211 (29%), Positives = 94/211 (44%), Gaps = 14/211 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T++ +++ C + LG Q+H + ++GF S V TAL DMY + L + +F
Sbjct: 169 DYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIF 228
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E+PERN V W+ +I GY R +R E L L++ M E S+ T +
Sbjct: 229 CEMPERNSVCWSAVIA----------GYVRNDRFTEGLKLYKVMLD-EGMGVSQATFASA 277
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ +H Y K F +D V +D YAKC + A K+F +
Sbjct: 278 FRSCAGLSAFELGTQLHAYALKTNF-GYDNIVGTATLDMYAKCDRMVDARKVF--NTFPN 334
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
S +I G+A EA+E F +QK
Sbjct: 335 PTRQSHNALIVGYARQDQVLEALEIFRSLQK 365
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 103/238 (43%), Gaps = 25/238 (10%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
T+S + + C L N G Q HA + GF V+V+ L Y L + +FD+
Sbjct: 39 LTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDK 98
Query: 85 LPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALALF 123
+P+R++++WN +I G +V W ++ Y + +++ +F
Sbjct: 99 MPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIF 158
Query: 124 RRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183
+M E + T VL A + +H + GF++ D+ L+D Y+
Sbjct: 159 TKMRLLE-IQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFDS-DVVTGTALVDMYS 216
Query: 184 KCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
C + A +F + +N V W+ +I+G+ + E ++ ++ M G+ +++
Sbjct: 217 TCKKLDHAFNIF--CEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQA 272
>gi|225435933|ref|XP_002267829.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g14170-like [Vitis vinifera]
Length = 455
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 160/310 (51%), Gaps = 28/310 (9%)
Query: 2 LVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYV 61
L +K + H PP D FT ++R C LG +H + ++G + ++V
Sbjct: 90 LPHKSIDLFLQMRHFNQPP--DVFTLPLVLRACAASGSVKLGVSVHGLCVEMGMEKSLFV 147
Query: 62 NTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALA 121
+AL MYV+ G + D+ LFDE+PER+ V WT ++ GY++ AL+
Sbjct: 148 ASALVFMYVTFGKVLDARVLFDEMPERDAVL----------WTAMLAGYAQHEEPMLALS 197
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
+FR+M + + ++++L A + G +++ + +HG+ +R A +++ N L+
Sbjct: 198 VFRQMVSAGVALDG-VVMISLLLACGQLGWLKHGKSVHGWITRRCL-ALGLNLGNALVYF 255
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
Y KC + + LF+ + ++++SW++II G+ + G A++ F+RM+ G+KPN
Sbjct: 256 YVKCAALGYSYNLFD--KMPERDVISWSSIILGYGLSGNVDIALDLFDRMRVAGVKPNDV 313
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+G E +F+ M++E V P++KHY C++D L RAG LE AE
Sbjct: 314 TFLGALSACTHTGMVERAHTYFE-MMKEYGVAPELKHYACMVDCLGRAGMLEDAERFIEE 372
Query: 291 IPSQITNVVV 300
+P + V+
Sbjct: 373 MPVEADGAVL 382
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 95/199 (47%), Gaps = 17/199 (8%)
Query: 40 PNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS-KLFDELPERNLVTWNVIIT 98
P LHA + +V +++ L MY LG L S +F +P RN+ +WN+
Sbjct: 24 PTHLRHLHARLLRTSLYDNVILSSKLLLMYSQLGKLSPHSLSVFLHMPHRNIYSWNI--- 80
Query: 99 GLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI-TILAVLPAIWKNGEVRNCQL 157
II +SR + ++++ LF +M + +P ++ T+ VL A +G V+
Sbjct: 81 -------IIGEFSRSHLPHKSIDLFLQMR--HFNQPPDVFTLPLVLRACAASGSVKLGVS 131
Query: 158 IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAM 217
+HG + G + V++ L+ Y G + A LF++ + ++ V WT +++G+A
Sbjct: 132 VHGLCVEMGMEK-SLFVASALVFMYVTFGKVLDARVLFDE--MPERDAVLWTAMLAGYAQ 188
Query: 218 HGMGKEAVENFERMQKVGL 236
H A+ F +M G+
Sbjct: 189 HEEPMLALSVFRQMVSAGV 207
>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
Length = 644
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/307 (31%), Positives = 158/307 (51%), Gaps = 44/307 (14%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAV--FSKVGFQSHVYVNTALGDMYVSLGFLKD 77
P D T++ ++ Y G +AV F K+ Q+ V NT + YV G +K+
Sbjct: 256 PKRDVITWNTMMA-----GYAQCGDVENAVELFEKMPEQNLVSWNTMIAG-YVQNGSVKE 309
Query: 78 SSKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRS 116
+ KLF +PERN+++WN +I+G +V W +I GYS+ ++
Sbjct: 310 AFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQA 369
Query: 117 NEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN 176
AL LF +M + +P+ T VLPA + H + GF + D+ V N
Sbjct: 370 ENALKLFGQMQMVD-MKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQS-DVLVGN 427
Query: 177 CLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
L+ YAKCG I A K+F+ + +++ S + +I G+A++G KE++E FE+MQ GL
Sbjct: 428 TLVGMYAKCGSIEDARKVFD--RMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGL 485
Query: 237 KPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAE 285
KP+R +G +EG ++FD M + P ++HYGC+ID+L RAG ++A
Sbjct: 486 KPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEAN 545
Query: 286 EVASGIP 292
++ + +P
Sbjct: 546 DLINKMP 552
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 118/244 (48%), Gaps = 48/244 (19%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT++ ++ C L LG + H K GF+S+V+V L DMY G ++ + +LF
Sbjct: 165 NHFTFASILPACTDLEV--LG-EFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELF 221
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
D++P+R++V+WN +I G V+ W ++ GY++ A+
Sbjct: 222 DKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVE 281
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS------ 175
LF +M E + ++ ++ +NG V K F F I
Sbjct: 282 LFEKM-----PEQNLVSWNTMIAGYVQNGSV-----------KEAFKLFQIMPERNVISW 325
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
N +I +A+ G + A KLF+ ++ N+VSW +I+G++ +G + A++ F +MQ V
Sbjct: 326 NAVISGFAQNGQVEEALKLFK--TMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVD 383
Query: 236 LKPN 239
+KPN
Sbjct: 384 MKPN 387
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 77/294 (26%), Positives = 141/294 (47%), Gaps = 44/294 (14%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSH-VYVNTALGDMYVSLGFLKDSSKLF 82
S TY L++ C+ LHA + F+ + + L +YV LG L ++ ++F
Sbjct: 64 SSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRVF 123
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+P +N+V+ WT +I Y+R EAL F M +P+ T ++
Sbjct: 124 DEMPVKNVVS----------WTAMIAAYARHEHGQEALGFFYEMQDVG-IQPNHFTFASI 172
Query: 143 LPAIWKNGEVRNCQLIHGYGE------KRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
LPA C + GE K GF + ++ V N L+D YAK GCI A +LF+
Sbjct: 173 LPA---------CTDLEVLGEFHDEIVKGGFES-NVFVGNGLVDMYAKRGCIEFARELFD 222
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-------EEGL 249
+ ++++VSW +I+G+ +G+ ++A++ F+ + K + + G E +
Sbjct: 223 --KMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAV 280
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ F+KM E+ ++ + +I + G +++A ++ +P + NV+ W
Sbjct: 281 ELFEKMPEQ-----NLVSWNTMIAGYVQNGSVKEAFKLFQIMPER--NVISWNA 327
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 108/233 (46%), Gaps = 25/233 (10%)
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
G++ + R EAL + + M P T ++L + + +L+H + +
Sbjct: 34 GLVKSLCKQGRLREALHILQDMVE-NGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQ 92
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
F DI + N L+ Y K G + A ++F++ V KN+VSWT +I+ +A H G+EA
Sbjct: 93 TQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPV--KNVVSWTAMIAAYARHEHGQEA 150
Query: 225 VENFERMQKVGLKPNR--------SWRIGEEGLKFFDKMVE---ECEVLPDIKHYGCLID 273
+ F MQ VG++PN + E +F D++V+ E V L+D
Sbjct: 151 LGFFYEMQDVGIQPNHFTFASILPACTDLEVLGEFHDEIVKGGFESNVFVG----NGLVD 206
Query: 274 ILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLF 326
+ + G +E A E+ +P + +VV W +I Y + + ++ +LF
Sbjct: 207 MYAKRGCIEFARELFDKMPQR--DVVSWNA-----MIAGYVQNGLIEDALKLF 252
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 91/206 (44%), Gaps = 38/206 (18%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T++ ++ C L+ G + H V + GFQS V V L MY G ++D+ K+FD +
Sbjct: 390 TFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRM 449
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT--EPSEITILAVL 143
+++ + + +I G I+G S+ E+L LF +M ++T +P +T + VL
Sbjct: 450 RQQDSASLSAMIVGYA-----INGCSK-----ESLELFEQM---QFTGLKPDRVTFVGVL 496
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNAFDI-----HVS------NCLIDTYAKCGCIFSAS 192
A G V G FDI H++ C+ID + GC A+
Sbjct: 497 SACCHAGLV-----------DEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEAN 545
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMH 218
L + + + W +++S H
Sbjct: 546 DLINKMPI-KPDADMWGSLLSACRTH 570
>gi|357511639|ref|XP_003626108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240992|gb|ABD32850.1| Pentatricopeptide repeat [Medicago truncatula]
gi|355501123|gb|AES82326.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 417
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 100/314 (31%), Positives = 162/314 (51%), Gaps = 45/314 (14%)
Query: 9 QIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDM 68
Q+Y H P+ D+F F +++ L LHA K+GF SH +++T L +
Sbjct: 23 QLYSKMHRNGVPI-DTFCILFTLKSSTRLPII---HHLHAHIIKLGFTSHFHISTCLLNS 78
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTGII 107
YV L FL D+ LFDE+P+R+ VTWN +I G +V W +I
Sbjct: 79 YVFLSFL-DACILFDEMPQRDTVTWNTMILGYSRLEDVKKARQLFDEMPHRDIVSWCNMI 137
Query: 108 DGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA---IWKNGEVRNCQLIHGYGEK 164
Y + ++L LFRRM E +P ++ VL + ++G + + +HGY K
Sbjct: 138 SAYLNVGSYMQSLYLFRRMLFVEGIKPDQVIACLVLSGCAHVERHG-LLGGKSVHGYIVK 196
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
G+ ++ + L++ YAK G + +A+ + E +D +++ SWT +I G G KEA
Sbjct: 197 NGWE-LNVEIGAALVNMYAKGGVLRNAAMVLE--LMDERDVTSWTLMICGAVRCGFNKEA 253
Query: 225 VENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLID 273
+ FE+MQ G+KPN G E+G ++F KM+EEC + P ++HY CL+
Sbjct: 254 LVVFEKMQMDGVKPNELTFTGVLSACAHGGFVEDGRRYF-KMIEECGLKPRVQHYACLVY 312
Query: 274 ILERAGRLEQAEEV 287
++ ++G LE+A E+
Sbjct: 313 LIGKSGMLEEAYEI 326
>gi|356534289|ref|XP_003535689.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g43790-like [Glycine max]
Length = 591
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 157/308 (50%), Gaps = 22/308 (7%)
Query: 11 YIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHA-VFSKVGFQSHVYVNTALGDMY 69
+I +H L P +SFT+ L + C + + G LHA V + +V +L + Y
Sbjct: 93 HILTHKTLQP--NSFTFPSLFKACASHPWLQHGPPLHAHVLKFLQPPYDPFVQNSLLNFY 150
Query: 70 VSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIID---GYSRMNRSNEALALFRRM 126
G L S LFD++ E +L TWN ++ + + + + S EAL LF M
Sbjct: 151 AKYGKLCVSRYLFDQISEPDLATWNTMLAAYAQSASHVSYSTSFEDADMSLEALHLFCDM 210
Query: 127 AACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG 186
+ +P+E+T++A++ A G + HGY + + V L+D Y+KCG
Sbjct: 211 QLSQ-IKPNEVTLVALISACSNLGALSQGAWAHGYVLRNNLK-LNRFVGTALVDMYSKCG 268
Query: 187 CIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG- 245
C+ A +LF++ S DR + +I GFA+HG G +A+E + M+ L P+ + +
Sbjct: 269 CLNLACQLFDELS-DRDTFC-YNAMIGGFAVHGHGNQALELYRNMKLEDLVPDGATIVVT 326
Query: 246 ----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQI 295
EEGL+ F+ M + P ++HYGCLID+L RAGRL++AEE +P +
Sbjct: 327 MFACSHGGLVEEGLEIFESMKGVHGMEPKLEHYGCLIDLLGRAGRLKEAEERLQDMPMK- 385
Query: 296 TNVVVWRT 303
N ++WR+
Sbjct: 386 PNAILWRS 393
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 52/223 (23%), Positives = 90/223 (40%), Gaps = 43/223 (19%)
Query: 41 NLGT--QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK--------LFDELPERNL 90
NL T Q+HA G Y Y+S L SSK +F+ +P L
Sbjct: 17 NLNTLKQVHAQMLTTGLSFQTY--------YLS-HLLNTSSKFASTYAFTIFNHIPNPTL 67
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
+N +I+ L + I + A +L+ + + +P+ T ++ A +
Sbjct: 68 FLYNTLISSLTHHSDQI---------HLAFSLYNHILTHKTLQPNSFTFPSLFKACASHP 118
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
+++ +H + K +D V N L++ YAK G + + LF+ S +L +W T
Sbjct: 119 WLQHGPPLHAHVLKFLQPPYDPFVQNSLLNFYAKYGKLCVSRYLFDQIS--EPDLATWNT 176
Query: 211 IISGFAMHG-------------MGKEAVENFERMQKVGLKPNR 240
+++ +A M EA+ F MQ +KPN
Sbjct: 177 MLAAYAQSASHVSYSTSFEDADMSLEALHLFCDMQLSQIKPNE 219
>gi|242084708|ref|XP_002442779.1| hypothetical protein SORBIDRAFT_08g002705 [Sorghum bicolor]
gi|241943472|gb|EES16617.1| hypothetical protein SORBIDRAFT_08g002705 [Sorghum bicolor]
Length = 560
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/335 (26%), Positives = 161/335 (48%), Gaps = 71/335 (21%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG--- 99
G +LH K+G YV AL MY G L ++ K FDE+P +N V+WN ++
Sbjct: 173 GAELHCRVLKLGCGQDRYVQNALVSMYGQFGRLGEARKAFDEMPVKNAVSWNALVVAHGV 232
Query: 100 -------------------------------------------------LVKWTGIIDGY 110
++ W +I GY
Sbjct: 233 SGDLQGAERVSQATPERNISWWNSEIMRNVRLGDLVEAARIFRDMPERDVISWNSLISGY 292
Query: 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF 170
+++ + AL +FR M + EP+E+T+++ L A + GE+ + IH Y + +G A
Sbjct: 293 AKLGMYSRALDVFRDMWKND-IEPTELTVVSALGACAEVGELELGRGIHDYLKSKGIEA- 350
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
D +V N L+D YAKCG + A ++F+ S+ K++ W T+I G ++HG +A++ F+
Sbjct: 351 DGYVGNALVDMYAKCGNLKLARQVFDSMSI--KDVTCWNTMIVGLSVHGHSHDALKLFDL 408
Query: 231 MQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
M ++P+ +G EG +F M+E+ +++P +KHYGC+I++L R G
Sbjct: 409 MN---IEPDHVTFLGVLTACSHSGLLNEGRVYFKSMIEDYKIVPSMKHYGCIINMLCRYG 465
Query: 280 RLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYF 314
++ +A ++ + +P + N V+W+ ++ +F
Sbjct: 466 KVHEAYQMINDMPVK-ANSVLWKMVMAACRVHGHF 499
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 25/207 (12%)
Query: 33 TCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVT 92
C + LG +H G ++ YV AL DMY G LK + ++FD + +++
Sbjct: 326 ACAEVGELELGRGIHDYLKSKGIEADGYVGNALVDMYAKCGNLKLARQVFDSMSIKDVTC 385
Query: 93 WNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA-----IW 147
WN +I GL S S++AL LF M EP +T L VL A +
Sbjct: 386 WNTMIVGL----------SVHGHSHDALKLFDLM----NIEPDHVTFLGVLTACSHSGLL 431
Query: 148 KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
G V +I Y + C+I+ + G + A ++ D V + N V
Sbjct: 432 NEGRVYFKSMIEDYKIVPSMKHY-----GCIINMLCRYGKVHEAYQMINDMPV-KANSVL 485
Query: 208 WTTIISGFAMHGMGKEAVENFERMQKV 234
W +++ +HG A RM ++
Sbjct: 486 WKMVMAACRVHGHFDIADRAVHRMHEL 512
>gi|224098357|ref|XP_002311156.1| predicted protein [Populus trichocarpa]
gi|222850976|gb|EEE88523.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 97/298 (32%), Positives = 151/298 (50%), Gaps = 29/298 (9%)
Query: 16 SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL 75
S L P +S T L+ L+ + G+ +H K GF+S +V TAL DMY G L
Sbjct: 184 SELNP--NSGTMVGLLPAFALLNDLDQGSCIHGKIIKCGFESECHVKTALIDMYAKCGSL 241
Query: 76 KDSSKLFDELPER-NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134
+ LF R + V+WNV+I G + ID +S F +M E +P
Sbjct: 242 SGAEFLFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSA----------FCQMK-LENIQP 290
Query: 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
+ +TI+ VLPA+ +R +H Y + GF + V NCLID YAKCG + + K+
Sbjct: 291 NIVTIVTVLPAVAHLSALRAGMTLHAYVIRMGFQS-KTPVGNCLIDMYAKCGWLDHSEKI 349
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWR 243
F + + K+ VSW +++G+A+HG G A+E F RMQ ++ + R
Sbjct: 350 FHE--MKNKDTVSWNVMLAGYAVHGRGSCAIELFSRMQDSEIRLDSFSFINVLSACRHAG 407
Query: 244 IGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ EG K FD M ++ ++ PD++HY C+ D+L RAG + ++ +P + + VW
Sbjct: 408 LIGEGRKIFDSMSKQHQLEPDLEHYACMADLLGRAGLFNEVLDLIKSMPME-PDAGVW 464
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/280 (27%), Positives = 121/280 (43%), Gaps = 53/280 (18%)
Query: 33 TCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVT 92
C +S LG +H K + V TAL MY GF + LF+ +P +++VT
Sbjct: 98 ACAEVSSLKLGKSMHCCAVKANVDLDISVGTALVSMYAKCGFFALALTLFNRMPCKDVVT 157
Query: 93 WNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEV 152
WN +I+GY+++ AL +F ++ E P+ T++ +LPA ++
Sbjct: 158 WNA----------MINGYAQIGEPFPALEMFHKLQLSELN-PNSGTMVGLLPAFALLNDL 206
Query: 153 RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTII 212
IHG K GF + + HV LID YAKCG + A LF T RK+ VSW +I
Sbjct: 207 DQGSCIHGKIIKCGFES-ECHVKTALIDMYAKCGSLSGAEFLFHRTGC-RKDEVSWNVMI 264
Query: 213 SGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYG--- 269
+G+ G +A F +M+ ++PN +V VLP + H
Sbjct: 265 AGYMHSGHAIDAFSAFCQMKLENIQPN---------------IVTIVTVLPAVAHLSALR 309
Query: 270 ----------------------CLIDILERAGRLEQAEEV 287
CLID+ + G L+ +E++
Sbjct: 310 AGMTLHAYVIRMGFQSKTPVGNCLIDMYAKCGWLDHSEKI 349
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 118/254 (46%), Gaps = 26/254 (10%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
GT++H + G S V V T + MY G + + +LF E+ R+LV W+ II V+
Sbjct: 7 GTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAAFVQ 66
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
GY + EAL+LFR M E + +++ +L+ LPA + ++ + +H
Sbjct: 67 -----SGYPQ-----EALSLFRSMQN-EGLQANKVILLSSLPACAEVSSLKLGKSMHCCA 115
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
K + DI V L+ YAKCG A LF K++V+W +I+G+A G
Sbjct: 116 VKANVD-LDISVGTALVSMYAKCGFFALALTLFNRMPC--KDVVTWNAMINGYAQIGEPF 172
Query: 223 EAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCL 271
A+E F ++Q L PN +G ++G K++ +C + L
Sbjct: 173 PALEMFHKLQLSELNPNSGTMVGLLPAFALLNDLDQGSCIHGKII-KCGFESECHVKTAL 231
Query: 272 IDILERAGRLEQAE 285
ID+ + G L AE
Sbjct: 232 IDMYAKCGSLSGAE 245
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 95/244 (38%), Gaps = 38/244 (15%)
Query: 37 LSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVI 96
LS G LHA ++GFQS V L DMY G+L S K+F E+ ++ V+WNV+
Sbjct: 305 LSALRAGMTLHAYVIRMGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEMKNKDTVSWNVM 364
Query: 97 ITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQ 156
+ GY+ R + A+ LF RM E S + + VL A G + +
Sbjct: 365 LA----------GYAVHGRGSCAIELFSRMQDSEIRLDS-FSFINVLSACRHAGLIGEGR 413
Query: 157 LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFA 216
I K+ D+ C+ D + G L + ++ V W ++
Sbjct: 414 KIFDSMSKQHQLEPDLEHYACMADLLGRAGLFNEVLDLIKSMPMEPDAGV-WGALLGAST 472
Query: 217 MHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILE 276
MH + ++ E L DK+ + ++ HY L +
Sbjct: 473 MH---------------------SNVQLAEFALHHLDKLEHK-----NLTHYAALSNTYA 506
Query: 277 RAGR 280
R+GR
Sbjct: 507 RSGR 510
>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1176
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 147/292 (50%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ + I C ++ G Q+HA G+ V + AL ++Y G ++++ F
Sbjct: 445 DNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSF 504
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+ ++ +TWN G++ G+++ EAL +F RM + + T ++
Sbjct: 505 EEIEHKDEITWN----------GLVSGFAQSGLHEEALKVFMRMDQ-SGVKHNVFTFVSA 553
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A E++ + IH K G ++F+ V N LI Y KCG A F + S
Sbjct: 554 LSASANLAEIKQGKQIHARVIKTG-HSFETEVGNALISLYGKCGSFEDAKMEFSEMS--E 610
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+N VSW TII+ + HG G EA++ F++M+K G+KPN IG EEGL +
Sbjct: 611 RNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSY 670
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F M +E + P HY C+IDI RAG+L++A++ +P + +VWRT
Sbjct: 671 FKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPI-AADAMVWRT 721
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 117/217 (53%), Gaps = 14/217 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FTY ++RTC +LG Q+H++ K GF+S +YV+ L DMY G+L+ + ++
Sbjct: 344 NQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVL 403
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ L E+++V+ WT +I GY + +ALA F+ M C P I + +
Sbjct: 404 EMLKEKDVVS----------WTSMIAGYVQHECCKDALAAFKEMQKCGIW-PDNIGLASA 452
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ +R IH G++ D+ + N L++ YA+CG I A FE+ ++
Sbjct: 453 ISGCAGINAMRQGLQIHARIYVSGYSG-DVSIWNALVNLYARCGRIREAFSSFEE--IEH 509
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
K+ ++W ++SGFA G+ +EA++ F RM + G+K N
Sbjct: 510 KDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHN 546
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 132/279 (47%), Gaps = 26/279 (9%)
Query: 16 SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL 75
S L P D T S L+ C +L GTQLH+ K G S + +L D+YV G +
Sbjct: 238 SGLSP--DCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDV 295
Query: 76 KDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS 135
+ + +F+ N+V WN+++ + ++N ++ LF +M A P+
Sbjct: 296 ETALVIFNSSDRTNVVLWNLMLV----------AFGQINDLAKSFELFCQMQAAG-IRPN 344
Query: 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
+ T +L E+ + IH K GF + D++VS LID Y+K G + A ++
Sbjct: 345 QFTYPCILRTCTCTREIDLGEQIHSLSVKTGFES-DMYVSGVLIDMYSKYGWLEKARRVL 403
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP-NRSWRIGEEGLKFFDK 254
E + K++VSWT++I+G+ H K+A+ F+ MQK G+ P N G +
Sbjct: 404 E--MLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINA 461
Query: 255 MVEECEVLP---------DIKHYGCLIDILERAGRLEQA 284
M + ++ D+ + L+++ R GR+ +A
Sbjct: 462 MRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREA 500
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 141/313 (45%), Gaps = 42/313 (13%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
+Y+Q+ + + P P + S ++ +C G +HA K GF S ++V
Sbjct: 130 LYRQMHRAGV---VPTP-----YVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVG 181
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
A+ +Y+ G + + ++F ++P R+ VT+N +I+ G+++ AL +
Sbjct: 182 NAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLIS----------GHAQCGHGEHALEI 231
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
F M + P +TI ++L A G+++ +H Y K G ++ D + L+D Y
Sbjct: 232 FEEMQFSGLS-PDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISS-DYIMEGSLLDLY 289
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN--- 239
KCG + +A +F S DR N+V W ++ F ++ E F +MQ G++PN
Sbjct: 290 VKCGDVETALVIF--NSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFT 347
Query: 240 -----------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
R +GE+ K E D+ G LID+ + G LE+A V
Sbjct: 348 YPCILRTCTCTREIDLGEQIHSLSVKTGFE----SDMYVSGVLIDMYSKYGWLEKARRVL 403
Query: 289 SGIPSQITNVVVW 301
+ + +VV W
Sbjct: 404 EMLKEK--DVVSW 414
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 123/276 (44%), Gaps = 44/276 (15%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
++HA G + V L D+Y G + + ++F+EL R+ V+ W
Sbjct: 63 EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVS----------WV 112
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
++ GY++ EAL L+R+M P+ + +VL + K +LIH G K
Sbjct: 113 AMLSGYAQNGLGEEALGLYRQMHRAGVV-PTPYVLSSVLSSCTKAELFAQGRLIHAQGYK 171
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
GF + +I V N +I Y +CG A ++F D + ++ V++ T+ISG A G G+ A
Sbjct: 172 HGFCS-EIFVGNAVITLYLRCGSFRLAERVFCD--MPHRDTVTFNTLISGHAQCGHGEHA 228
Query: 225 VENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKH----------------- 267
+E FE MQ GL P+ ++ C L D++
Sbjct: 229 LEIFEEMQFSGLSPD---------CVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDY 279
Query: 268 --YGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
G L+D+ + G +E A + + S TNVV+W
Sbjct: 280 IMEGSLLDLYVKCGDVETALVIFN--SSDRTNVVLW 313
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 85/195 (43%), Gaps = 14/195 (7%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
FT+ + L+ G Q+HA K G V AL +Y G +D+ F E
Sbjct: 548 FTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSE 607
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ ERN V+WN IIT S+ R EAL LF +M E +P+++T + VL
Sbjct: 608 MSERNEVSWNTIITSC----------SQHGRGLEALDLFDQMKK-EGIKPNDVTFIGVLA 656
Query: 145 AIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
A G V ++ G H + C+ID + + G + A K E+ +
Sbjct: 657 ACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYA-CVIDIFGRAGQLDRAKKFIEEMPIAAD 715
Query: 204 NLVSWTTIISGFAMH 218
+V W T++S +H
Sbjct: 716 AMV-WRTLLSACKVH 729
>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 734
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 85/265 (32%), Positives = 141/265 (53%), Gaps = 25/265 (9%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
++ C L + G ++H + ++G S+V V AL MY + +S +FDEL R
Sbjct: 269 LQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQ 328
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
V+WN +I G ++ S +A+ LF RM E +P T+++V+PA+
Sbjct: 329 VSWNAMILGC----------AQNGCSEDAVRLFTRMQ-LENVKPDSFTLVSVIPALADIS 377
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
+ + IHGY + + D++V LID YAKCG + A LF S +++++W
Sbjct: 378 DPLQARWIHGYSIRLHLDQ-DVYVLTALIDMYAKCGRVNIARILF--NSARERHVITWNA 434
Query: 211 IISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEEC 259
+I G+ HG GK AVE FE M+ +G+ PN + + +EG ++F M E+
Sbjct: 435 MIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDY 494
Query: 260 EVLPDIKHYGCLIDILERAGRLEQA 284
+ P ++HYG ++D+L RAG+L++A
Sbjct: 495 GLEPGMEHYGTMVDLLGRAGKLDEA 519
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 110/223 (49%), Gaps = 15/223 (6%)
Query: 14 SHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG 73
S + PP+ +FT L++ C G +HA + G S TAL +MY
Sbjct: 51 SSAGAPPVLRTFTS--LLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCR 108
Query: 74 FLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE 133
D+ ++FD +P R+ V WN ++ G + +G +RM A+ + RM E
Sbjct: 109 RPADARRVFDRMPVRDRVAWNALVAGYAR-----NGLARM-----AMEMVVRMQEEEGER 158
Query: 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASK 193
P IT+++VLPA + C+ H + + G ++V+ ++D Y KCG I +A
Sbjct: 159 PDSITLVSVLPACANARALAACREAHAFAIRSGLEEL-VNVATAILDAYCKCGDIRAARV 217
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
+F+ + KN VSW +I G+A +G +EA+ F RM + G+
Sbjct: 218 VFD--WMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGV 258
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 57/130 (43%), Gaps = 11/130 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DSFT +I +S P +H ++ VYV TAL DMY G + + LF
Sbjct: 362 DSFTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILF 421
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ ER+++TWN +I GY A+ LF M + P+E T L+V
Sbjct: 422 NSARERHVITWN----------AMIHGYGSHGFGKAAVELFEEMKSIGIV-PNETTFLSV 470
Query: 143 LPAIWKNGEV 152
L A G V
Sbjct: 471 LSACSHAGLV 480
>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 834
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 149/290 (51%), Gaps = 27/290 (9%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
T+ L+R +L+ L Q+H + K G ++ +AL D+Y + LKDS +FDE
Sbjct: 455 LTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDE 514
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ ++LV WN + GY + + + EAL LF + P E T ++
Sbjct: 515 MKVKDLVIWNSMFA----------GYVQQSENEEALNLFLELQLSR-ERPDEFTFANMVT 563
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A V+ Q H KRG + +++N L+D YAKCG A K F+ S ++
Sbjct: 564 AAGNLASVQLGQEFHCQLLKRGLEC-NPYITNALLDMYAKCGSPEDAHKAFD--SAASRD 620
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFD 253
+V W ++IS +A HG GK+A++ E+M G++PN +G E+GLK F+
Sbjct: 621 VVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFE 680
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
M+ + P+ +HY C++ +L RAGRL +A E+ +P++ +VWR+
Sbjct: 681 LML-RFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTK-PAAIVWRS 728
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 102/195 (52%), Gaps = 14/195 (7%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
QL + K GF VYV T L D Y+ G + + +FD LPE++ VTW +I+G VK
Sbjct: 169 QLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVK-- 226
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
M RS +L LF ++ + P + VL A + + IH + +
Sbjct: 227 --------MGRSYVSLQLFYQLME-DNVVPDGYILSTVLSACSILPFLEGGKQIHAHILR 277
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
G D + N LID+Y KCG + +A KLF + KN++SWTT++SG+ + + KEA
Sbjct: 278 YGLE-MDASLMNVLIDSYVKCGRVIAAHKLF--NGMPNKNIISWTTLLSGYKQNALHKEA 334
Query: 225 VENFERMQKVGLKPN 239
+E F M K GLKP+
Sbjct: 335 MELFTSMSKFGLKPD 349
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 139/308 (45%), Gaps = 42/308 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D + S ++ +C +L GTQ+HA K + YV +L DMY L D+ K+F
Sbjct: 349 DMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVF 408
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRS---NEALALFRRMAACEYTEPSEITI 139
D ++V +N +I+GYSR+ +EAL +FR M PS +T
Sbjct: 409 DIFAAADVVLFN----------AMIEGYSRLGTQWELHEALNIFRDMRF-RLIRPSLLTF 457
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+++L A + + IHG K G N DI + LID Y+ C C+ + +F++
Sbjct: 458 VSLLRASASLTSLGLSKQIHGLMFKYGLN-LDIFAGSALIDVYSNCYCLKDSRLVFDEMK 516
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR--------------SWRIG 245
V K+LV W ++ +G+ +EA+ F +Q +P+ S ++G
Sbjct: 517 V--KDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLG 574
Query: 246 EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGF 305
+E K EC P I + L+D+ + G E A + S+ +VV W +
Sbjct: 575 QEFHCQLLKRGLECN--PYITN--ALLDMYAKCGSPEDAHKAFDSAASR--DVVCWNS-- 626
Query: 306 LRLLINSY 313
+I+SY
Sbjct: 627 ---VISSY 631
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 108/244 (44%), Gaps = 29/244 (11%)
Query: 4 YKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNT 63
Y LQ Y + P D + S ++ C L + G Q+HA + G + +
Sbjct: 231 YVSLQLFYQLMEDNVVP--DGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMN 288
Query: 64 ALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALF 123
L D YV G + + KLF+ +P +N+++ WT ++ GY + EA+ LF
Sbjct: 289 VLIDSYVKCGRVIAAHKLFNGMPNKNIIS----------WTTLLSGYKQNALHKEAMELF 338
Query: 124 RRMAAC-----EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
M+ Y S +T A L A+ +V H Y K D +V+N L
Sbjct: 339 TSMSKFGLKPDMYACSSILTSCASLHALGFGTQV------HAYTIKANLGN-DSYVTNSL 391
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG---KEAVENFERMQKVG 235
ID YAKC C+ A K+F+ + ++V + +I G++ G EA+ F M+
Sbjct: 392 IDMYAKCDCLTDARKVFDIFAA--ADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRL 449
Query: 236 LKPN 239
++P+
Sbjct: 450 IRPS 453
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 113/290 (38%), Gaps = 64/290 (22%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT++ ++ L+ LG + H K G + + Y+ AL DMY G +D+ K F
Sbjct: 554 DEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAF 613
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D R++V WN +I+ Y+ +AL + +M + E EP+ IT + V
Sbjct: 614 DSAASRDVVCWNSVIS----------SYANHGEGKKALQMLEKMMS-EGIEPNYITFVGV 662
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN----CLIDTYAKCGCIFSASKLFEDT 198
L A G V + G + F I C++ + G + A +L E
Sbjct: 663 LSACSHAGLVED-----GLKQFELMLRFGIEPETEHYVCMVSLLGRAGRLNKARELIEKM 717
Query: 199 SVDRKNLVSWTTIISG----------------------------------FAMHGMGKEA 224
+V W +++SG +A GM EA
Sbjct: 718 PTKPAAIV-WRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEA 776
Query: 225 VENFERMQKVGL--KPNRSW-RIGEEGLKFFDKMVEEC------EVLPDI 265
+ ERM+ G+ +P RSW I +E F K C EVL D+
Sbjct: 777 KKVRERMKVEGVVKEPGRSWIGINKEVHIFLSKDKSHCKANQIYEVLDDL 826
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 140/334 (41%), Gaps = 67/334 (20%)
Query: 37 LSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVI 96
L Y N+ +H G + Y++ L ++Y G + + K+F+++PERNLV+W+ +
Sbjct: 60 LHYQNV---VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTM 116
Query: 97 ITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQ 156
++ GI + E+L +F P+E + + + A C
Sbjct: 117 VSA-CNHHGIYE---------ESLVVFLEFWRTRKDSPNEYILSSFIQA---------CS 157
Query: 157 LIHGYGE-----------KRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
+ G G K GF+ D++V LID Y K G I A +F+ ++ K+
Sbjct: 158 GLDGRGRWMVFQLQSFLVKSGFDR-DVYVGTLLIDFYLKDGNIDYARLVFD--ALPEKST 214
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLP-- 263
V+WTT+ISG G +++ F ++ + + P+ ++ C +LP
Sbjct: 215 VTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDG---------YILSTVLSACSILPFL 265
Query: 264 --------DIKHYG---------CLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFL 306
I YG LID + GR+ A ++ +G+P++ N++ W T
Sbjct: 266 EGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNK--NIISWTTLLS 323
Query: 307 RLLINSYFFSPITL-NSQRLFFFPAALYALTQIL 339
N+ + L S F +YA + IL
Sbjct: 324 GYKQNALHKEAMELFTSMSKFGLKPDMYACSSIL 357
>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 586
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 150/315 (47%), Gaps = 40/315 (12%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
+ SH P D FT L+ C L LG +HA K S++ + AL DMYV
Sbjct: 155 MRSHGLEP---DDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVK 211
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGY 110
LK + K+FD E++ V+WN II G +V W +I GY
Sbjct: 212 CNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGY 271
Query: 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF 170
++ LF RM A E +P ++TI+ ++ A+ + G + + IHG K
Sbjct: 272 AQNGDYVTVKCLFTRMFA-ENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKM-LTKI 329
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
+ + LID Y KCG I A +F + K++ +WTT+I+GFA HG G +A+E F
Sbjct: 330 EAFSGSALIDMYCKCGSIERAFVIF--NQIPEKDVTTWTTMITGFAFHGFGNKALELFSV 387
Query: 231 MQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
MQ KPN + +EGLK F M + + P ++HYGCL+D+L R+G
Sbjct: 388 MQ-AETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSG 446
Query: 280 RLEQAEEVASGIPSQ 294
RL A V +P +
Sbjct: 447 RLLDAIGVIEKMPME 461
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 14/172 (8%)
Query: 60 YVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEA 119
Y+ +L YV G + + +LFDE+ +RN+V++N +I G K I+
Sbjct: 99 YLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILG----------I 148
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
L LF M + EP + T+L +L + GE + + +H EK + ++ + N L+
Sbjct: 149 LELFHDMRS-HGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEK-SIGSSNLILYNALL 206
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
D Y KC + A K+F+ K+ VSW TII+G+A G + A + F ++
Sbjct: 207 DMYVKCNELKLARKVFDGPM--EKDTVSWNTIIAGYAKVGELELACDLFNQI 256
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 7/125 (5%)
Query: 116 SNE-ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHV 174
SNE A ++R M T P T L +L EV+ IH + G + + ++
Sbjct: 45 SNEKAFTIYRSMLQ-NGTYPDRQTFLYLLQTTKFVAEVKQ---IHCHALVFGLLSKEEYL 100
Query: 175 SNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
N LI Y GC A +LF++ S DR N+VS+ T+I GFA G +E F M+
Sbjct: 101 RNSLIKRYVDNGCFECARQLFDEMS-DR-NVVSYNTMILGFAKVGNILGILELFHDMRSH 158
Query: 235 GLKPN 239
GL+P+
Sbjct: 159 GLEPD 163
>gi|302142752|emb|CBI19955.3| unnamed protein product [Vitis vinifera]
Length = 488
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 148/271 (54%), Gaps = 36/271 (13%)
Query: 47 HAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG------- 99
H+VF ++ ++ V N+ + YV +G ++ + +F ++PE+ +V+W +I+G
Sbjct: 128 HSVFEQMPLRNEVSWNSMISG-YVRIGDVRAAQSIFYQMPEKTVVSWTAMISGYATNGDL 186
Query: 100 --------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
+V W +I GY + ++AL +F M P + T++++L A
Sbjct: 187 KSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSA 246
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
G + + + I+ Y +K + I + N LID +AKCG + +A ++F S ++ +
Sbjct: 247 CAHLGSLEHGKWINSYIKKNKLH-LSIPLGNALIDMFAKCGDVENAKEVFHHMS--KRCI 303
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDK 254
++WTT++SG A++G +EA+ F++M G KP+ I EEG + FD+
Sbjct: 304 ITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQ 363
Query: 255 MVEECEVLPDIKHYGCLIDILERAGRLEQAE 285
MV+E + P I+HYGC++D+L RAG+LE+A+
Sbjct: 364 MVQEFGIKPRIEHYGCMVDLLGRAGKLEEAK 394
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 147/332 (44%), Gaps = 49/332 (14%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG-FLKDSSKL 81
+SFT++FL++ T G +H K+GF S V+V +L Y + L + ++
Sbjct: 9 NSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSLLGFYANCSENLGSAYRV 68
Query: 82 FDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEAL 120
F+E+PER++++WN +I+ +V W ++ G S+ A
Sbjct: 69 FEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGLSKAGNMELAH 128
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
++F +M +E++ +++ + G+VR Q I ++ ++ +I
Sbjct: 129 SVFEQMPL-----RNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVVSW-----TAMIS 178
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-LKPN 239
YA G + SA +F V KN+VSW +ISG+ + +A+ F M G +P+
Sbjct: 179 GYATNGDLKSAENIFNHMPV--KNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPD 236
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
++ I E G K+ + +++ ++ I LID+ + G +E A+EV
Sbjct: 237 QTTLISILSACAHLGSLEHG-KWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVF 295
Query: 289 SGIPSQITNVVVWRTGFLRLLINSYFFSPITL 320
+ + ++ W T L +N I L
Sbjct: 296 HHMSKRC--IITWTTMVSGLAVNGKCREAINL 325
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 100/224 (44%), Gaps = 34/224 (15%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ C L G +++ K + + AL DM+ G ++++ ++F
Sbjct: 236 DQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVF 295
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ +R ++TW +++GL ++G R EA+ LF +M E T+P ++ +AV
Sbjct: 296 HHMSKRCIITWTTMVSGLA-----VNGKCR-----EAINLFDKMCL-EGTKPDDVIFIAV 344
Query: 143 LPAIWKNGEVRNC-----QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
L A G V Q++ +G K + C++D + G KL E
Sbjct: 345 LSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHY-----GCMVDLLGRAG------KLEEA 393
Query: 198 TSVDRK-NLVSWTTIISGFAMHGMGKEAVENF------ERMQKV 234
+D++ + S+ T++S + E V +F +RM+KV
Sbjct: 394 KIMDQEPSNPSYLTLVSNLSASFGRWEDVLSFRVAMRQQRMEKV 437
>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
Length = 643
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 148/278 (53%), Gaps = 37/278 (13%)
Query: 49 VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK------ 102
VF ++ + + NT + + Y +G + ++ +LFDE+PERNLV+WN +++G VK
Sbjct: 88 VFDRMVCRDVISWNTII-NGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKCGNVEE 146
Query: 103 ---------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIW 147
W ++ Y++ + NEALALF +M A +P+E T++++L A
Sbjct: 147 AFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVG-VKPTEATVVSLLSACA 205
Query: 148 KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
G + +H Y I V L+D YAKCG I A+++F +++ K++++
Sbjct: 206 HLGALDKGLHLHTYINDNRIEVNSI-VGTALVDMYAKCGKISLATQVF--NAMESKDVLA 262
Query: 208 WTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMV 256
W TII+G A+HG KEA + F+ M++ ++PN + +EG K D M
Sbjct: 263 WNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCMS 322
Query: 257 EECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
+ P ++HY C+ID+L RAG LE+A E+ +P +
Sbjct: 323 SSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPME 360
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 142/317 (44%), Gaps = 49/317 (15%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
TY F+I+ C S G +H K GF+ Y+ +L +Y + L + +LF
Sbjct: 1 MTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSL 60
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+R++V+WN +I G VK + G++RM +F RM + I+ ++
Sbjct: 61 CSDRDVVSWNAMIDGYVKRGEM--GHTRM--------VFDRMVCRDV-----ISWNTIIN 105
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
G++ + + +R ++ N ++ + KCG + A LF + ++
Sbjct: 106 GYAIVGKIDEAKRLFDEMPERNLVSW-----NSMLSGFVKCGNVEEAFGLFSEMPC--RD 158
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFF- 252
+VSW ++++ +A G EA+ F++M+ VG+KP + + ++GL
Sbjct: 159 VVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHT 218
Query: 253 ---DKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLL 309
D +E ++ L+D+ + G++ A +V + + S+ +V+ W T +
Sbjct: 219 YINDNRIEVNSIVGT-----ALVDMYAKCGKISLATQVFNAMESK--DVLAWNTIIAGMA 271
Query: 310 INSYFFSPITLNSQRLF 326
I+ + +Q+LF
Sbjct: 272 IHGH-----VKEAQQLF 283
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 100/228 (43%), Gaps = 34/228 (14%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T L+ C L + G LH + + + V TAL DMY G + ++++F+ +
Sbjct: 196 TVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAM 255
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
++++ WN II G+ I G+ + EA LF+ M EP++IT +A+L A
Sbjct: 256 ESKDVLAWNTIIAGMA-----IHGHVK-----EAQQLFKEMKEAS-VEPNDITFVAMLSA 304
Query: 146 IWKNGEVRNCQ-----LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
G V Q + YG + +D C+ID A+ G + A +L +
Sbjct: 305 CSHAGMVDEGQKLLDCMSSSYGIEPKVEHYD-----CVIDLLARAGLLEEAMELIGTMPM 359
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-----LKPNRSWR 243
+ N + ++ G +HG NFE + VG L+P S R
Sbjct: 360 E-PNPSALGALLGGCRIHG-------NFELGEMVGKRLINLQPCHSGR 399
>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
Length = 1175
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 147/292 (50%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ + I C ++ G Q+HA G+ V + AL ++Y G ++++ F
Sbjct: 445 DNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSF 504
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+ ++ +TWN G++ G+++ EAL +F RM + + T ++
Sbjct: 505 EEIEHKDEITWN----------GLVSGFAQSGLHEEALKVFMRMDQ-SGVKHNVFTFVSA 553
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A E++ + IH K G ++F+ V N LI Y KCG A F + S
Sbjct: 554 LSASANLAEIKQGKQIHARVIKTG-HSFETEVGNALISLYGKCGSFEDAKMEFSEMS--E 610
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+N VSW TII+ + HG G EA++ F++M+K G+KPN IG EEGL +
Sbjct: 611 RNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHVGLVEEGLSY 670
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F M +E + P HY C+IDI RAG+L++A++ +P + +VWRT
Sbjct: 671 FKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPI-AADAMVWRT 721
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 117/217 (53%), Gaps = 14/217 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FTY ++RTC +LG Q+H++ K GF+S +YV+ L DMY G+L+ + ++
Sbjct: 344 NQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVL 403
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ L E+++V+ WT +I GY + +ALA F+ M C P I + +
Sbjct: 404 EMLKEKDVVS----------WTSMIAGYVQHECCKDALAAFKEMQKCGIW-PDNIGLASA 452
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ +R IH G++ D+ + N L++ YA+CG I A FE+ ++
Sbjct: 453 ISGCAGINAMRQGLQIHARIYVSGYSG-DVSIWNALVNLYARCGRIREAFSSFEE--IEH 509
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
K+ ++W ++SGFA G+ +EA++ F RM + G+K N
Sbjct: 510 KDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHN 546
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 132/279 (47%), Gaps = 26/279 (9%)
Query: 16 SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL 75
S L P D T S L+ C +L GTQLH+ K G S + +L D+YV G +
Sbjct: 238 SGLSP--DCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDV 295
Query: 76 KDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS 135
+ + +F+ N+V WN+++ + ++N ++ LF +M A P+
Sbjct: 296 ETALVIFNSSDRTNVVLWNLMLV----------AFGQINDLAKSFELFCQMQAAG-IRPN 344
Query: 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
+ T +L E+ + IH K GF + D++VS LID Y+K G + A ++
Sbjct: 345 QFTYPCILRTCTCTREIDLGEQIHSLSVKTGFES-DMYVSGVLIDMYSKYGWLEKARRVL 403
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP-NRSWRIGEEGLKFFDK 254
E + K++VSWT++I+G+ H K+A+ F+ MQK G+ P N G +
Sbjct: 404 E--MLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINA 461
Query: 255 MVEECEVLP---------DIKHYGCLIDILERAGRLEQA 284
M + ++ D+ + L+++ R GR+ +A
Sbjct: 462 MRQGLQIHARIYVSGYSGDVSIWNALVNLYARCGRIREA 500
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 141/313 (45%), Gaps = 42/313 (13%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
+Y+Q+ + + P P + S ++ +C G +HA K GF S ++V
Sbjct: 130 LYRQMHRAGV---VPTP-----YVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVG 181
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
A+ +Y+ G + + ++F ++P R+ VT+N +I+ G+++ AL +
Sbjct: 182 NAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLIS----------GHAQCGHGEHALEI 231
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
F M + P +TI ++L A G+++ +H Y K G ++ D + L+D Y
Sbjct: 232 FEEMQFSGLS-PDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISS-DYIMEGSLLDLY 289
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN--- 239
KCG + +A +F S DR N+V W ++ F ++ E F +MQ G++PN
Sbjct: 290 VKCGDVETALVIF--NSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFT 347
Query: 240 -----------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
R +GE+ K E D+ G LID+ + G LE+A V
Sbjct: 348 YPCILRTCTCTREIDLGEQIHSLSVKTGFE----SDMYVSGVLIDMYSKYGWLEKARRVL 403
Query: 289 SGIPSQITNVVVW 301
+ + +VV W
Sbjct: 404 EMLKEK--DVVSW 414
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 123/276 (44%), Gaps = 44/276 (15%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
++HA G + V L D+Y G + + ++F+EL R+ V+ W
Sbjct: 63 EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVS----------WV 112
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
++ GY++ EAL L+R+M P+ + +VL + K +LIH G K
Sbjct: 113 AMLSGYAQNGLGEEALGLYRQMHRAGVV-PTPYVLSSVLSSCTKAELFAQGRLIHAQGYK 171
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
GF + +I V N +I Y +CG A ++F D + ++ V++ T+ISG A G G+ A
Sbjct: 172 HGFCS-EIFVGNAVITLYLRCGSFRLAERVFCD--MPHRDTVTFNTLISGHAQCGHGEHA 228
Query: 225 VENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKH----------------- 267
+E FE MQ GL P+ ++ C L D++
Sbjct: 229 LEIFEEMQFSGLSPD---------CVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDY 279
Query: 268 --YGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
G L+D+ + G +E A + + S TNVV+W
Sbjct: 280 IMEGSLLDLYVKCGDVETALVIFN--SSDRTNVVLW 313
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 85/195 (43%), Gaps = 14/195 (7%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
FT+ + L+ G Q+HA K G V AL +Y G +D+ F E
Sbjct: 548 FTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSE 607
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ ERN V+WN IIT S+ R EAL LF +M E +P+++T + VL
Sbjct: 608 MSERNEVSWNTIITSC----------SQHGRGLEALDLFDQMKK-EGIKPNDVTFIGVLA 656
Query: 145 AIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
A G V ++ G H + C+ID + + G + A K E+ +
Sbjct: 657 ACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYA-CVIDIFGRAGQLDRAKKFIEEMPIAAD 715
Query: 204 NLVSWTTIISGFAMH 218
+V W T++S +H
Sbjct: 716 AMV-WRTLLSACKVH 729
>gi|356518777|ref|XP_003528054.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29230-like [Glycine max]
Length = 737
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 147/293 (50%), Gaps = 40/293 (13%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG----- 99
Q+H V VG + +V +N AL D Y G S +F +PERN+V+W ++
Sbjct: 123 QVHGVAVIVGMEWNVILNNALIDAYGKCGEPNLSFSVFCYMPERNVVSWTSMVVAYTRAC 182
Query: 100 ----------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
V WT ++ G+ R +EA +F++M E PS T ++V+
Sbjct: 183 RLDEACRVFKDMPVKNTVSWTALLTGFVRNGGCDEAFDVFKQMLE-EGVRPSAPTFVSVI 241
Query: 144 PAIWKNGEVRNCQLIHGY---GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
A + + + +HG G+K G N F+++V N LID YAKCG + SA LFE +
Sbjct: 242 DACAQEALIGRGKQVHGQIIRGDKSG-NLFNVYVCNALIDMYAKCGDMKSAENLFEMAPM 300
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
+++V+W T+I+GFA +G G+E++ F RM + ++PN +G EGL
Sbjct: 301 --RDVVTWNTLITGFAQNGHGEESLAVFRRMIEAKVEPNHVTFLGVLSGCNHAGLDNEGL 358
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITN-VVVW 301
+ D M + V P +HY LID+L R RL +A + +P I N + VW
Sbjct: 359 QLVDLMERQYGVKPKAEHYALLIDLLGRRNRLMEAMSLIEKVPDGIKNHIAVW 411
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 103/236 (43%), Gaps = 28/236 (11%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVF---SKVGFQS 57
F V+KQ+ + + +P T+ +I C + G Q+H K G
Sbjct: 219 FDVFKQMLEEGVRPSAP--------TFVSVIDACAQEALIGRGKQVHGQIIRGDKSGNLF 270
Query: 58 HVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSN 117
+VYV AL DMY G +K + LF+ P R++VTWN +IT G+++
Sbjct: 271 NVYVCNALIDMYAKCGDMKSAENLFEMAPMRDVVTWNTLIT----------GFAQNGHGE 320
Query: 118 EALALFRRMAACEYTEPSEITILAVLPAIWKNG-EVRNCQLIHGYGEKRGFNAFDIHVSN 176
E+LA+FRRM + EP+ +T L VL G + QL+ + G H +
Sbjct: 321 ESLAVFRRMIEAK-VEPNHVTFLGVLSGCNHAGLDNEGLQLVDLMERQYGVKPKAEHYA- 378
Query: 177 CLIDTYAKCGCIFSASKLFEDTSVDRKNLVS-WTTIISGFAMHG---MGKEAVENF 228
LID + + A L E KN ++ W ++ +HG + ++A E
Sbjct: 379 LLIDLLGRRNRLMEAMSLIEKVPDGIKNHIAVWGAVLGACRVHGNLDLARKAAEKL 434
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 80/321 (24%), Positives = 129/321 (40%), Gaps = 69/321 (21%)
Query: 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP 86
YSFLI C+T L +H K ++ L D Y G + + K F +LP
Sbjct: 13 YSFLISKCITARRVKLANAVHGHLIKTALFFDAFLANGLIDAYSKCGCEESAHKTFGDLP 72
Query: 87 ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI 146
+ +WN +I+ K TG D EA LF +M + +
Sbjct: 73 NKTTRSWNTLISFYSK-TGFFD---------EAHNLFDKMPQRNVVSYNSLI-------- 114
Query: 147 WKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG---------C---------- 187
+G ++ + +HG G +++ ++N LID Y KCG C
Sbjct: 115 --SGNLQWLRQVHGVAVIVGME-WNVILNNALIDAYGKCGEPNLSFSVFCYMPERNVVSW 171
Query: 188 ------------IFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
+ A ++F+D V KN VSWT +++GF +G EA + F++M + G
Sbjct: 172 TSMVVAYTRACRLDEACRVFKDMPV--KNTVSWTALLTGFVRNGGCDEAFDVFKQMLEEG 229
Query: 236 LKPNRSWRI------GEEGLKFFDKMVEECEVLPD-----IKHYGC--LIDILERAGRLE 282
++P+ + +E L K V + D Y C LID+ + G ++
Sbjct: 230 VRPSAPTFVSVIDACAQEALIGRGKQVHGQIIRGDKSGNLFNVYVCNALIDMYAKCGDMK 289
Query: 283 QAEEVASGIPSQITNVVVWRT 303
AE + P + +VV W T
Sbjct: 290 SAENLFEMAP--MRDVVTWNT 308
>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g27610-like [Vitis vinifera]
Length = 866
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 95/294 (32%), Positives = 163/294 (55%), Gaps = 33/294 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FTYS ++ +S +Q+HA+ K +++ V TAL D Y +G +++K+F
Sbjct: 395 NHFTYSTILTANAAVS----PSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIF 450
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + E+++V W+ +++G Y++M A+ +F ++A E EP+E T +V
Sbjct: 451 ELIDEKDIVAWSAMLSG----------YAQMGDIEGAVKIFLQLAK-EGVEPNEFTFSSV 499
Query: 143 LPAIWK-NGEVRNCQLIHGYGEKRGF-NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
L A V + H K GF NA + VS+ L+ YAK G I SA+++F+ V
Sbjct: 500 LNACAAPTASVEQGKQFHSCSIKSGFSNA--LCVSSALVTMYAKRGNIESANEVFK-RQV 556
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
DR +LVSW ++ISG+A HG GK++++ FE M+ L+ + IG EG
Sbjct: 557 DR-DLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQ 615
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++FD MV++ ++P ++HY C++D+ RAG LE+A ++ + +P +WRT
Sbjct: 616 RYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFP-AGATIWRT 668
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 113/215 (52%), Gaps = 14/215 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D + S +++ C L +G Q+H K GF V V T+L DMY+ ++D ++F
Sbjct: 91 DGSSLSCVLKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVF 150
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ +N+V+ WT ++ GY + + +AL LF +M E +P+ T AV
Sbjct: 151 DEMRVKNVVS----------WTSLLAGYRQNGLNEQALKLFSQM-QLEGIKPNPFTFAAV 199
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + +G V +H K G ++ I V N +++ Y+K + A +F+ S++
Sbjct: 200 LGGLAADGAVEKGVQVHTMVIKSGLDS-TIFVGNSMVNMYSKSLMVSDAKAVFD--SMEN 256
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
+N VSW ++I+GF +G+ EA E F RM+ G+K
Sbjct: 257 RNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVK 291
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 114/239 (47%), Gaps = 26/239 (10%)
Query: 5 KQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTA 64
K Q+ + P P FT++ ++ G Q+H + K G S ++V +
Sbjct: 179 KLFSQMQLEGIKPNP-----FTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNS 233
Query: 65 LGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFR 124
+ +MY + D+ +FD + RN V+WN +I G V T +D EA LF
Sbjct: 234 MVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFV--TNGLD--------LEAFELFY 283
Query: 125 RM--AACEYTEPSEITILAVLPAIWKNGEVR--NCQLIHGYGEKRGFNAFDIHVSNCLID 180
RM + T+ T++ + I + + +CQ+I K G + FD+++ L+
Sbjct: 284 RMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVI-----KNGSD-FDLNIKTALMV 337
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
Y+KC I A KLF +N+VSWT IISG+ +G A+ F +M++ G++PN
Sbjct: 338 AYSKCSEIDDAFKLFCMMH-GVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPN 395
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 92/168 (54%), Gaps = 26/168 (15%)
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALF---RRMAACEYTEP 134
S +LFDE P++ GL + ++ +SR +++ EAL LF RR + T+
Sbjct: 45 SQQLFDETPQQ----------GLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGS--PTDG 92
Query: 135 SEIT-ILAVLPAIWKN--GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191
S ++ +L V ++ G+ +CQ I K GF D+ V L+D Y K +
Sbjct: 93 SSLSCVLKVCGCLFDRIVGKQVHCQCI-----KCGF-VEDVSVGTSLVDMYMKTESVEDG 146
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
++F++ V KN+VSWT++++G+ +G+ ++A++ F +MQ G+KPN
Sbjct: 147 ERVFDEMRV--KNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPN 192
>gi|242033621|ref|XP_002464205.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor]
gi|241918059|gb|EER91203.1| hypothetical protein SORBIDRAFT_01g014070 [Sorghum bicolor]
Length = 521
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/319 (30%), Positives = 139/319 (43%), Gaps = 38/319 (11%)
Query: 16 SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL 75
SP PP + T L+ L G LH + K+G YV A MY S
Sbjct: 126 SPTPP--ERRTLPSLLAAYARLGRAGDGAALHGMALKLGLAGDAYVRNATIAMYASCARA 183
Query: 76 KDSSKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMN 114
++ LF + PE + V N I L + W+ ++ Y+R
Sbjct: 184 DEALALFGQCPEFDAVACNSAIVALARAGRVDEARAVFDGMPERTVATWSAMVSAYARAA 243
Query: 115 RSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHV 174
R EALALF M A + EP+ +++VL G + +H Y ++ G A + V
Sbjct: 244 RCGEALALFSAMQA-DGVEPNANVLVSVLGCCASLGALDQGAWVHAYIDRHGV-AMNALV 301
Query: 175 SNCLIDTYAKCGCIFSASKLFEDT-SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
L+D Y KCG + A ++F+ S L SW +++ G A+HG +EAV F ++
Sbjct: 302 VTALVDMYCKCGSVDDARQVFDAARSQGSAKLSSWNSMMQGLAVHGQWREAVALFSELRS 361
Query: 234 VGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLE 282
GL P+ I +E F M E V P I+HYGCL+D L RAGRL
Sbjct: 362 YGLSPDNVTFIAVLTAYGHAGMPDEAQAAFASMATEHSVEPGIEHYGCLVDALARAGRLR 421
Query: 283 QAEEVASGIPSQITNVVVW 301
+AE+ +P + VW
Sbjct: 422 EAEDAIRSMP-MAPDAAVW 439
>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
Length = 921
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 108/375 (28%), Positives = 163/375 (43%), Gaps = 97/375 (25%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P DSFTYSFLI+ + +H+ K+G +V AL D Y G D+
Sbjct: 432 PRRDSFTYSFLIKALSAAGVAPV-RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDAR 490
Query: 80 K-------------------------------LFDELPERNLVTWNVIITG--------- 99
K LFDE+PE++ V+WN I+ G
Sbjct: 491 KVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEA 550
Query: 100 ------------LVKWTGIIDGYSRMNRSNEALALFRRM------------AAC------ 129
+V W+ ++ GY + A +F +M +AC
Sbjct: 551 AFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLV 610
Query: 130 --------EYTEPS-EITILAV---LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
+ E S E+ + AV L A ++G + + IH Y KR HV N
Sbjct: 611 DEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNL-GRSTHVCNA 669
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
LID + KCGC+ A +F DT +K+ VSW +II GFAMHG G +A+E F +M++ G
Sbjct: 670 LIDMFCKCGCVNRADYVF-DTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFN 728
Query: 238 PNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
P+ I +EG + F M + ++P I+HYGC+ID+L R G +++A +
Sbjct: 729 PDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVD 788
Query: 287 VASGIPSQITNVVVW 301
+ +P + N V+W
Sbjct: 789 LIKSMPWE-PNEVIW 802
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 15/191 (7%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD-ELPER 88
++ C +LG ++H K +V AL DM+ G + + +FD E ++
Sbjct: 635 ILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQK 694
Query: 89 NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148
+ V+WN II G++ ++AL LF +M + P +T++ VL A
Sbjct: 695 DSVSWN----------SIIGGFAMHGHGDKALELFAQMKQQGFN-PDAVTMINVLSACTH 743
Query: 149 NGEVRNCQLIHGYGEKRGFNAF-DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
G V + H +R + I C+ID + G I A L + + N V
Sbjct: 744 MGFVDEGRR-HFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWE-PNEVI 801
Query: 208 WTTIISGFAMH 218
W +++S +H
Sbjct: 802 WGSLLSACRLH 812
>gi|125587880|gb|EAZ28544.1| hypothetical protein OsJ_12524 [Oryza sativa Japonica Group]
Length = 559
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 87/304 (28%), Positives = 150/304 (49%), Gaps = 38/304 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVF-SKVGFQSH-VYVNTALGDMYVSLGFLKDSSK 80
D +T L+ C L LG +H V ++G + ++ AL DMY G + + +
Sbjct: 111 DQYTAVALLACCGRLKKAVLGRSVHGVVVRRIGVADRGLILSNALLDMYAKCGEMNTAMR 170
Query: 81 LFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEA 119
+FDE ER+ ++WN ++ G ++ W ++ GY+R +
Sbjct: 171 VFDEAGERDGISWNTMVAGFANAGLLDLASKYFGEAPARDIISWNALLAGYARYEEFSAT 230
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
+ LF M A P ++T + ++ A+ G + + + +HG+ K D +++ L+
Sbjct: 231 MILFHDMLASSVI-PDKVTAVTLISAVAGKGTLNSARSVHGWVVKE-HGTQDSFLASALV 288
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D Y KCG I A +FE +VD K++ WT +ISG A HG G A++ F +MQ G +PN
Sbjct: 289 DMYCKCGSIKLAYAVFE-KAVD-KDVTLWTAMISGLAFHGHGDVALDLFWKMQAEGTEPN 346
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
+ +EG K FD + + + P ++H+GC++D+L R+GRL A ++A
Sbjct: 347 GVTLVAVLSACSHAGLFDEGCKIFDTLKQRFNIEPGVEHFGCMVDLLARSGRLSDAVDLA 406
Query: 289 SGIP 292
+P
Sbjct: 407 RRMP 410
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 101/199 (50%), Gaps = 15/199 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ L+++ V ++G Q+HA G S VY+ +L MY+ G ++ + +F
Sbjct: 11 DEQTFLSLLKS-VDAERRSVGKQVHAHVVVTGLHSRVYLRNSLIKMYLDAGDVEAAEAMF 69
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
P + V+ N++++G VK S +AL FR MA+ + T +A+
Sbjct: 70 RCAPTADAVSCNIMLSGYVKG----------GCSGKALRFFRGMAS-RGIGVDQYTAVAL 118
Query: 143 LPAIWKNGEVRNCQLIHGYGEKR-GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L + + + +HG +R G + +SN L+D YAKCG + +A ++F++
Sbjct: 119 LACCGRLKKAVLGRSVHGVVVRRIGVADRGLILSNALLDMYAKCGEMNTAMRVFDEAG-- 176
Query: 202 RKNLVSWTTIISGFAMHGM 220
++ +SW T+++GFA G+
Sbjct: 177 ERDGISWNTMVAGFANAGL 195
>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Glycine max]
Length = 563
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/317 (31%), Positives = 157/317 (49%), Gaps = 36/317 (11%)
Query: 4 YKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF-------Q 56
Y+ L+ SH + P + T + C + G +H K G+
Sbjct: 187 YEALKVFEDMSHWNVEP--NEITMVNALIACAHSRDIDTGRWVHQRIRKAGYDPFMSTSN 244
Query: 57 SHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRS 116
S++ + TA+ +MY G LK + LF+++P+RN+V+WN +I+ Y++ R
Sbjct: 245 SNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWN----------SMINAYNQYERH 294
Query: 117 NEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN 176
EAL LF M P + T L+VL + Q +H Y K G A DI ++
Sbjct: 295 QEALDLFFDMWT-SGVYPDKATFLSVLSVCAHQCALALGQTVHAYLLKTGI-ATDISLAT 352
Query: 177 CLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK-VG 235
L+D YAK G + +A K+F +S+ +K++V WT++I+G AMHG G EA+ F+ MQ+
Sbjct: 353 ALLDMYAKTGELGNAQKIF--SSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTMQEDSS 410
Query: 236 LKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
L P+ IG EE K F M E ++P +HYGC++D+L RAG +A
Sbjct: 411 LVPDHITYIGVLFACSHVGLVEEAKKHFRLMTEMYGMVPGREHYGCMVDLLSRAGHFREA 470
Query: 285 EEVASGIPSQITNVVVW 301
E + + Q N+ +W
Sbjct: 471 ERLMETMTVQ-PNIAIW 486
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 157/324 (48%), Gaps = 49/324 (15%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
L+Y+Q+ + + +SP D FT+ F+++ C ++ + G +H+ K GF++ Y
Sbjct: 89 MLLYRQMIE---NGYSP-----DHFTFPFVLKACCVIADQDCGKCIHSCIVKSGFEADAY 140
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
T L MYVS +K K+FD +P+ N+V WT +I GY + N+ EAL
Sbjct: 141 TATGLLHMYVSCADMKSGLKVFDNIPKWNVVA----------WTCLIAGYVKNNQPYEAL 190
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF------DIHV 174
+F M+ EP+EIT++ L A + ++ + +H K G++ F +I +
Sbjct: 191 KVFEDMSHWN-VEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGYDPFMSTSNSNIIL 249
Query: 175 SNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
+ +++ YAKCG + A LF + ++N+VSW ++I+ + + +EA++ F M
Sbjct: 250 ATAILEMYAKCGRLKIARDLF--NKMPQRNIVSWNSMINAYNQYERHQEALDLFFDMWTS 307
Query: 235 GLKPNRSWRIGEEGLKFFDKMVEECE---------------VLPDIKHYGCLIDILERAG 279
G+ P+++ L +C + DI L+D+ + G
Sbjct: 308 GVYPDKA-----TFLSVLSVCAHQCALALGQTVHAYLLKTGIATDISLATALLDMYAKTG 362
Query: 280 RLEQAEEVASGIPSQITNVVVWRT 303
L A+++ S + Q +VV+W +
Sbjct: 363 ELGNAQKIFSSL--QKKDVVMWTS 384
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 21/201 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ ++ C LG +HA K G + + + TAL DMY G L ++ K+F
Sbjct: 312 DKATFLSVLSVCAHQCALALGQTVHAYLLKTGIATDISLATALLDMYAKTGELGNAQKIF 371
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
L ++++V WT +I+G + NEAL++F+ M P IT + V
Sbjct: 372 SSLQKKDVVM----------WTSMINGLAMHGHGNEALSMFQTMQEDSSLVPDHITYIGV 421
Query: 143 LPAIWKNGEVRNCQ-----LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
L A G V + + YG G + C++D ++ G A +L E
Sbjct: 422 LFACSHVGLVEEAKKHFRLMTEMYGMVPGREHY-----GCMVDLLSRAGHFREAERLMET 476
Query: 198 TSVDRKNLVSWTTIISGFAMH 218
+V + N+ W +++G +H
Sbjct: 477 MTV-QPNIAIWGALLNGCQIH 496
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 113/264 (42%), Gaps = 40/264 (15%)
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY 131
+ F DS F ++ +LV + + W +I G+ + ++ L+R+M Y
Sbjct: 43 IDFCVDSE--FGDINYADLVLRQIHNPSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGY 100
Query: 132 TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191
+ P T VL A + + IH K GF A D + + L+ Y C + S
Sbjct: 101 S-PDHFTFPFVLKACCVIADQDCGKCIHSCIVKSGFEA-DAYTATGLLHMYVSCADMKSG 158
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR----------- 240
K+F++ + + N+V+WT +I+G+ + EA++ FE M ++PN
Sbjct: 159 LKVFDN--IPKWNVVAWTCLIAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIACA 216
Query: 241 --------SW---RIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
W RI + G F +L ++++ + GRL+ A ++ +
Sbjct: 217 HSRDIDTGRWVHQRIRKAGYDPFMSTSNSNIILAT-----AILEMYAKCGRLKIARDLFN 271
Query: 290 GIPSQITNVVVWRTGFLRLLINSY 313
+P + N+V W + +IN+Y
Sbjct: 272 KMPQR--NIVSWNS-----MINAY 288
>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 804
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 149/281 (53%), Gaps = 25/281 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D TY+ ++ C G ++HA +K G S V AL +MY G +KD+ ++F
Sbjct: 330 DRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDARQVF 389
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +P+R++V+ WT ++ Y+ ++ E+ F++M + + ++IT + V
Sbjct: 390 DRMPKRDVVS----------WTTLLGRYADCDQVVESFTTFKQMLQ-QGVKANKITYMCV 438
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A ++ + IH K G A D+ V+N L+ Y KCG + A ++FE S+
Sbjct: 439 LKACSNPVALKWGKEIHAEVVKAGLLA-DLAVTNALMSMYFKCGSVEDAIRVFEGMSM-- 495
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKF 251
+++V+W T+I G +G G EA++ +E M+ G++PN R + EEG +
Sbjct: 496 RDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQ 555
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
F M ++ ++P KHY C++DIL RAG L +AE+V IP
Sbjct: 556 FAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIP 596
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 150/313 (47%), Gaps = 32/313 (10%)
Query: 11 YIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV 70
Y+H P DS+ Y L+++CV +G Q+H + G + +VY+ L +Y
Sbjct: 18 YLHRKGPQ---VDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYA 74
Query: 71 SLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE 130
G + ++ +LFD+ +++V+WNV+I+ GY+ + EA LF M E
Sbjct: 75 HCGSVNEARQLFDKFSNKSVVSWNVMIS----------GYAHRGLAQEAFNLFTLMQQ-E 123
Query: 131 YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190
EP + T +++L A + + IH + G A D V N LI YAKCG +
Sbjct: 124 RLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGL-ANDTTVGNALISMYAKCGSVRD 182
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---------- 240
A ++F+ ++ ++ VSWTT+ +A G G+E+++ + M + ++P+R
Sbjct: 183 ARRVFD--AMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSAC 240
Query: 241 -SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVV 299
S E+G + +VE E D++ L + + G + A EV + + +V+
Sbjct: 241 GSLAALEKGKQIHAHIVES-EYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYR--DVI 297
Query: 300 VWRTGFLRLLINS 312
W T +R ++S
Sbjct: 298 AWNT-MIRGFVDS 309
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 137/289 (47%), Gaps = 26/289 (8%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
TY ++ C +L+ G Q+HA + + S V V+TAL MY+ G KD+ ++F+
Sbjct: 231 ITYMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFEC 290
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
L R+++ WN +I G V +G ++ EA F RM E P T VL
Sbjct: 291 LSYRDVIAWNTMIRGFVD-SGQLE---------EAHGTFHRMLE-EGVAPDRATYTTVLS 339
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A + G + + IH K G + D+ N LI+ Y+K G + A ++F+ + +++
Sbjct: 340 ACARPGGLARGKEIHARAAKDGLVS-DVRFGNALINMYSKAGSMKDARQVFD--RMPKRD 396
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR----------SWRIGEEGLKFFDK 254
+VSWTT++ +A E+ F++M + G+K N+ S + + K
Sbjct: 397 VVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHA 456
Query: 255 MVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
V + +L D+ L+ + + G +E A V G+ + +VV W T
Sbjct: 457 EVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGM--SMRDVVTWNT 503
>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 1004
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 146/291 (50%), Gaps = 28/291 (9%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
+T+ ++ +C L + G Q+HA K + +V TAL DMY +L+D+ F+
Sbjct: 517 YTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNR 576
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
L R+L TW VIIT Y++ N+ +AL FR+M E +P+E T+ L
Sbjct: 577 LSVRDLFTWTVIITN----------YAQTNQGEKALNYFRQMQQ-EGVKPNEFTLAGCLS 625
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
+ Q +H K G + D+ V + L+D YAKCGC+ A LFE ++ R++
Sbjct: 626 GCSSLASLEGGQQLHSMVFKSG-HVSDMFVGSALVDMYAKCGCMEEAEALFE--ALIRRD 682
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFD 253
++W TII G+A +G G +A+ F M G+ P+ G EEG + F+
Sbjct: 683 TIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFN 742
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP-SQITNVVVWRT 303
M + + P + H C++DIL R G+ ++ E+ + SQ N ++W T
Sbjct: 743 SMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQ--NALIWET 791
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 118/247 (47%), Gaps = 24/247 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT + +++ C G +H++ K G++ + ++ L DMY G D+ +F
Sbjct: 313 NEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVF 372
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + ++V W+ +IT L + +S E++ LF M + T P++ TI ++
Sbjct: 373 KTIKKPDIVVWSALITCL----------DQQGQSEESIKLFHLMRLGD-TLPNQYTICSL 421
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G ++ Q IH K GF D+ VSN L+ Y K GC+ +KL+E + VDR
Sbjct: 422 LSAATNTGNLQYGQSIHACVWKYGFET-DVAVSNALVTMYMKNGCVHDGTKLYE-SMVDR 479
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVL 262
+L+SW +SG GM + F M + G PN + F ++ C L
Sbjct: 480 -DLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPN---------MYTFISILGSCSCL 529
Query: 263 PDIKHYG 269
D+ HYG
Sbjct: 530 FDV-HYG 535
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 136/293 (46%), Gaps = 26/293 (8%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L + +T L+ G +HA K GF++ V V+ AL MY+ G + D +K
Sbjct: 412 LPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTK 471
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
L++ + +R+L++WN ++GL G+ D L +F M E P+ T +
Sbjct: 472 LYESMVDRDLISWNAYLSGLHD-CGMYD---------RPLTIFYHMLE-EGFIPNMYTFI 520
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
++L + +V + +H + K + + V LID YAKC + A F SV
Sbjct: 521 SILGSCSCLFDVHYGRQVHAHIIKNQLDDNNF-VCTALIDMYAKCMYLEDADVAFNRLSV 579
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR----------SWRIGEEGLK 250
++L +WT II+ +A G++A+ F +MQ+ G+KPN S EG +
Sbjct: 580 --RDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQ 637
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
MV + + D+ L+D+ + G +E+AE + + + T + W T
Sbjct: 638 QLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDT--IAWNT 688
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 110/218 (50%), Gaps = 14/218 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT + ++ C +LG Q+HA K+G ++V +AL D+Y G ++ +SK+F
Sbjct: 212 NEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMF 271
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+PE+N VTWNV +++GY++ L LF M + + +E T+ V
Sbjct: 272 IGMPEQNDVTWNV----------LLNGYAQRGDVTGVLKLFCSMMELD-VKCNEFTLTTV 320
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + ++ Q+IH K G+ + + L+D Y+KCG A +F+ ++ +
Sbjct: 321 LKGCANSKNLKQGQVIHSLIIKCGYEGNEF-IGCGLVDMYSKCGLAIDAIGVFK--TIKK 377
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
++V W+ +I+ G +E+++ F M+ PN+
Sbjct: 378 PDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQ 415
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 103/240 (42%), Gaps = 39/240 (16%)
Query: 4 YKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNT 63
++Q+QQ + P + FT + + C +L+ G QLH++ K G S ++V +
Sbjct: 605 FRQMQQ------EGVKP--NEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGS 656
Query: 64 ALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALF 123
AL DMY G ++++ LF+ L R+ + WN II GY++ + N+AL F
Sbjct: 657 ALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIIC----------GYAQNGQGNKALTAF 706
Query: 124 RRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF--DIHVS------ 175
R M E P +T +L A G V K FN+ D +S
Sbjct: 707 RMMLD-EGISPDGVTFTGILSACSHQGLVEE--------GKEHFNSMYRDFGISPTVDHC 757
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQ 232
C++D + G + + + L+ W T++ MH +G++A +Q
Sbjct: 758 ACMVDILGRVGKFDELEDFIQKMQLSQNALI-WETVLGASKMHNNLVLGEKAANKLFELQ 816
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 107/216 (49%), Gaps = 18/216 (8%)
Query: 27 YSFLIRTCVTLSYPNLGTQLHAVFSK--VGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
YS ++R C + + +H + K + SH++V +L ++Y + + + +
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWV--SLVNVYAKCRYSAYARLVLAK 172
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+P+R++V+W +I GLV +G+ +N+++ LF+ M E P+E T+ L
Sbjct: 173 MPDRDVVSWTALIQGLVA-----EGF-----ANDSIYLFQEMQN-EGIMPNEFTLATGLK 221
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A + + +H K G D+ V + L+D YAKCG I ASK+F + +N
Sbjct: 222 ACSLCMALDLGKQMHAQAFKLGL-LLDLFVGSALVDLYAKCGEIELASKMF--IGMPEQN 278
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
V+W +++G+A G ++ F M ++ +K N
Sbjct: 279 DVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNE 314
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 20/166 (12%)
Query: 158 IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAM 217
IHG K N D H+ L++ YAKC +SA + +++VSWT +I G
Sbjct: 134 IHGLIVKDVINP-DSHLWVSLVNVYAKCR--YSAYARLVLAKMPDRDVVSWTALIQGLVA 190
Query: 218 HGMGKEAVENFERMQKVGLKPNR----------SWRIGEEGLKFFDKMVEECEVLPDIKH 267
G +++ F+ MQ G+ PN S + + K + +L D+
Sbjct: 191 EGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFV 250
Query: 268 YGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSY 313
L+D+ + G +E A ++ G+P Q N V W +L+N Y
Sbjct: 251 GSALVDLYAKCGEIELASKMFIGMPEQ--NDVTW-----NVLLNGY 289
>gi|356519586|ref|XP_003528453.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g33760-like [Glycine max]
Length = 582
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/302 (30%), Positives = 157/302 (51%), Gaps = 35/302 (11%)
Query: 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF 74
HS + P ++T++ +I+ C LS LGT +H+ G+ S+ +V AL Y
Sbjct: 101 HSRIVP--STYTFTSVIKACADLSLLRLGTIVHSHVFVSGYASNSFVQAALVTFYAKSCT 158
Query: 75 LKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134
+ + K+FDE+P+R+++ WN +I+ GY + ++EA+ +F +M EP
Sbjct: 159 PRVARKVFDEMPQRSIIAWNSMIS----------GYEQNGLASEAVEVFNKMRE-SGGEP 207
Query: 135 SEITILAVLPAIWKNGEVR-NCQL---IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190
T ++VL A + G + C L I G G + ++ ++ L++ +++CG +
Sbjct: 208 DSATFVSVLSACSQLGSLDLGCWLHECIVGTGIR-----MNVVLATSLVNMFSRCGDVGR 262
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG----- 245
A +F+ S++ N+VSWT +ISG+ MHG G EA+E F RM+ G+ PNR +
Sbjct: 263 ARAVFD--SMNEGNVVSWTAMISGYGMHGYGVEAMEVFHRMKACGVVPNRVTYVAVLSAC 320
Query: 246 ------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVV 299
EG F M +E V+P ++H+ C++D+ R G L +A + G+ S+
Sbjct: 321 AHAGLINEGRLVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVRGLSSEELVPA 380
Query: 300 VW 301
VW
Sbjct: 381 VW 382
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 94/214 (43%), Gaps = 24/214 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DS T+ ++ C L +LG LH G + +V + T+L +M+ G + + +F
Sbjct: 208 DSATFVSVLSACSQLGSLDLGCWLHECIVGTGIRMNVVLATSLVNMFSRCGDVGRARAVF 267
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + E N+V+W T +I GY EA+ +F RM AC P+ +T +AV
Sbjct: 268 DSMNEGNVVSW----------TAMISGYGMHGYGVEAMEVFHRMKACGVV-PNRVTYVAV 316
Query: 143 LPAIWKNGEVRNCQLIHG-----YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
L A G + +L+ YG G + HV C++D + + G + A +
Sbjct: 317 LSACAHAGLINEGRLVFASMKQEYGVVPGV---EHHV--CMVDMFGRGGLLNEAYQFVRG 371
Query: 198 TSVDRKNLVSWTTIISGFAMH---GMGKEAVENF 228
S + WT ++ MH +G E EN
Sbjct: 372 LSSEELVPAVWTAMLGACKMHKNFDLGVEVAENL 405
>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/315 (32%), Positives = 150/315 (47%), Gaps = 40/315 (12%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
+ SH P D FT L+ C L LG +HA K S++ + AL DMYV
Sbjct: 220 MRSHGLEP---DDFTMLGLLLLCGQLGETKLGKSVHAQIEKSIGSSNLILYNALLDMYVK 276
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGY 110
LK + K+FD E++ V+WN II G +V W +I GY
Sbjct: 277 CNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPTRDIVSWNSLISGY 336
Query: 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF 170
++ LF RM A E +P ++TI+ ++ A+ + G + + IHG K
Sbjct: 337 AQNGDYVTVKCLFTRMFA-ENVKPDKVTIVNLISAVAEMGALDQGRWIHGLAVKM-LTKI 394
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
+ + LID Y KCG I A +F + K++ +WTT+I+GFA HG G +A+E F
Sbjct: 395 EAFSGSALIDMYCKCGSIERAFVIF--NQIPEKDVTTWTTMITGFAFHGFGNKALELFSV 452
Query: 231 MQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
MQ KPN + +EGLK F M + + P ++HYGCL+D+L R+G
Sbjct: 453 MQ-AETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGCLVDLLCRSG 511
Query: 280 RLEQAEEVASGIPSQ 294
RL A V +P +
Sbjct: 512 RLLDAIGVIEKMPME 526
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 14/172 (8%)
Query: 60 YVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEA 119
Y+ +L YV G + + +LFDE+ +RN+V++N +I G K I+
Sbjct: 164 YLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVGNILG----------I 213
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
L LF M + EP + T+L +L + GE + + +H EK + ++ + N L+
Sbjct: 214 LELFHDMRS-HGLEPDDFTMLGLLLLCGQLGETKLGKSVHAQIEK-SIGSSNLILYNALL 271
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
D Y KC + A K+F+ K+ VSW TII+G+A G + A + F ++
Sbjct: 272 DMYVKCNELKLARKVFDGPM--EKDTVSWNTIIAGYAKVGELELACDLFNQI 321
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 62/125 (49%), Gaps = 7/125 (5%)
Query: 116 SNE-ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHV 174
SNE A ++R M T P T L +L EV+ IH + G + + ++
Sbjct: 110 SNEKAFTIYRSMLQ-NGTYPDRQTFLYLLQTTKFVAEVKQ---IHCHALVFGLLSKEEYL 165
Query: 175 SNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
N LI Y GC A +LF++ S DR N+VS+ T+I GFA G +E F M+
Sbjct: 166 RNSLIKRYVDNGCFECARQLFDEMS-DR-NVVSYNTMILGFAKVGNILGILELFHDMRSH 223
Query: 235 GLKPN 239
GL+P+
Sbjct: 224 GLEPD 228
>gi|413938708|gb|AFW73259.1| hypothetical protein ZEAMMB73_606431 [Zea mays]
Length = 488
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/294 (31%), Positives = 147/294 (50%), Gaps = 40/294 (13%)
Query: 45 QLHAVFSKVGFQ---SHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV 101
Q+HA+ K G SHV T+L Y LG + D+ K+FD + +R +VTWNV++ L+
Sbjct: 82 QIHALLVKSGGSRAVSHVQAFTSLIRAYARLGRVCDARKVFDGMADRTVVTWNVLLDALI 141
Query: 102 K---------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+ W II G++R + A+ LF M P E T++
Sbjct: 142 RDGDLDAAWEVFVKMPQRNAVSWNTIISGFARNGWAPVAVDLFIEMTVAYGLAPDEATMV 201
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+ A+ G + + HGY +R F+ D + L+ Y +CG + +A F SV
Sbjct: 202 GFVSAVRDIGLLAIGKSAHGYVLRREFS-LDGPLGVALVSMYTRCGSMGAAHSCF--LSV 258
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
KN+ WT++I+GFA HG + A+ F M++VG++PN + +EG
Sbjct: 259 TTKNVEHWTSLIAGFAAHGQPENALRLFVEMRQVGIEPNGVTFVAVLSACSHGGLVDEGF 318
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
K+FD M + P I+HYGCL+D+L RAG L++A +AS +P V+W +
Sbjct: 319 KYFDLM-RSMGIRPMIQHYGCLVDLLGRAGFLKEAFNLASNLPED-PGFVIWSS 370
>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
Length = 871
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 143/253 (56%), Gaps = 26/253 (10%)
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELP--ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNE 118
V AL DMY K + +FD +P +R++VTW V+I G ++ +NE
Sbjct: 430 VINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLI----------GGNAQHGEANE 479
Query: 119 ALALFRRMAACE-YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
AL LF +M + + P+ TI L A + G +R + IH Y + F + + V+NC
Sbjct: 480 ALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANC 539
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
LID Y+K G + +A +F++ + ++N VSWT++++G+ MHG G+EA++ F MQKV L
Sbjct: 540 LIDMYSKSGDVDAARVVFDN--MHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLV 597
Query: 238 PN-----------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
P+ + ++G+ +F+ M ++ V+P +HY C++D+L RAGRL++A E
Sbjct: 598 PDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAME 657
Query: 287 VASGIPSQITNVV 299
+ G+P + T V
Sbjct: 658 LIRGMPMKPTPAV 670
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 135/276 (48%), Gaps = 22/276 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +T+ F+++ C + G +HAV GF+ +V+V L MY G +++ ++F
Sbjct: 144 DHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVF 203
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ ER + LV W I+ Y + S A+ +F RM P ++++ V
Sbjct: 204 DEMRERG-------VGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNV 256
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LPA G + +HGY + G D+ V N ++D YAKCG + A+K+FE V
Sbjct: 257 LPACASVGAWSRGKQVHGYALRSGLFE-DVFVGNAVVDMYAKCGMMEEANKVFERMKV-- 313
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-RSWR----------IGEEGLKF 251
K++VSW +++G++ G +A+ FE++++ ++ N +W +G E L
Sbjct: 314 KDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDV 373
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
F +M+ C P++ L+ AG L +E
Sbjct: 374 FRQML-LCGSEPNVVTLVSLLSGCASAGTLLHGKET 408
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 123/248 (49%), Gaps = 36/248 (14%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ + ++ C ++ + G Q+H + G V+V A+ DMY G +++++K+F
Sbjct: 249 DAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVF 308
Query: 83 DELPERNLVTWNVIITG-------------------------LVKWTGIIDGYSRMNRSN 117
+ + +++V+WN ++TG +V W+ +I GY++
Sbjct: 309 ERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGF 368
Query: 118 EALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN------AFD 171
EAL +FR+M C +EP+ +T++++L G + + + H + K N D
Sbjct: 369 EALDVFRQMLLCG-SEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDD 427
Query: 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
+ V N LID Y+KC +A +F+ +++V+WT +I G A HG EA+E F +M
Sbjct: 428 LMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQM 487
Query: 232 QKVGLKPN 239
L+P+
Sbjct: 488 ----LQPD 491
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 15/194 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHV-YVNTALGDMYVSLGFLKDSSKL 81
++FT S + C L G Q+HA + F+S + +V L DMY G + + +
Sbjct: 497 NAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVV 556
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + +RN V+W ++T GY R EAL +F M P +T +
Sbjct: 557 FDNMHQRNGVSWTSLMT----------GYGMHGRGEEALQIFYEMQKVXLV-PDGVTFVV 605
Query: 142 VLPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
VL A +G V + +G + G H + C++D ++ G + A +L +
Sbjct: 606 VLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYA-CMVDLLSRAGRLDEAMELIRGMPM 664
Query: 201 DRKNLVSWTTIISG 214
V W ++S
Sbjct: 665 KPTPAV-WVALLSA 677
>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g29760, chloroplastic; Flags: Precursor
gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 738
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 148/295 (50%), Gaps = 35/295 (11%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
++ C + G Q+ + + ++ + A+ DMY G ++D+ +LFD + E++
Sbjct: 238 VLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKD 297
Query: 90 LVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALALFRRMAA 128
VTW ++ G +V W +I Y + + NEAL +F +
Sbjct: 298 NVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQL 357
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
+ + ++IT+++ L A + G + + IH Y +K G + HV++ LI Y+KCG +
Sbjct: 358 QKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIR-MNFHVTSALIHMYSKCGDL 416
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN--------- 239
+ ++F SV+++++ W+ +I G AMHG G EAV+ F +MQ+ +KPN
Sbjct: 417 EKSREVF--NSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFC 474
Query: 240 --RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+ +E F +M ++P+ KHY C++D+L R+G LE+A + +P
Sbjct: 475 ACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMP 529
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 109/198 (55%), Gaps = 20/198 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ +T+ FLI+ +S +LG LH + K S V+V +L Y S G L + K+F
Sbjct: 130 NKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVF 189
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ E+++V+WN +I G V+ ++AL LF++M + E + S +T++ V
Sbjct: 190 TTIKEKDVVSWNSMINGFVQ----------KGSPDKALELFKKMES-EDVKASHVTMVGV 238
Query: 143 LPAIWKNGEVRNCQL---IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
L A K +RN + + Y E+ N ++ ++N ++D Y KCG I A +LF+ +
Sbjct: 239 LSACAK---IRNLEFGRQVCSYIEENRVNV-NLTLANAMLDMYTKCGSIEDAKRLFD--A 292
Query: 200 VDRKNLVSWTTIISGFAM 217
++ K+ V+WTT++ G+A+
Sbjct: 293 MEEKDNVTWTTMLDGYAI 310
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 128/286 (44%), Gaps = 30/286 (10%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV--SLGFLKDSSKLFDELPE 87
LI CV+L Q H + G S Y + L M S L+ + K+FDE+P+
Sbjct: 36 LIERCVSLRQLK---QTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPK 92
Query: 88 RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIW 147
N WN +I Y+ ++ F M + P++ T ++ A
Sbjct: 93 PNSFAWNTLIRA----------YASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAA 142
Query: 148 KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
+ + Q +HG K + D+ V+N LI Y CG + SA K+F T++ K++VS
Sbjct: 143 EVSSLSLGQSLHGMAVKSAVGS-DVFVANSLIHCYFSCGDLDSACKVF--TTIKEKDVVS 199
Query: 208 WTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGE-------EGLKFFDKM---VE 257
W ++I+GF G +A+E F++M+ +K + +G L+F ++ +E
Sbjct: 200 WNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIE 259
Query: 258 ECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
E V ++ ++D+ + G +E A+ + + + + V W T
Sbjct: 260 ENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEK--DNVTWTT 303
>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
[Vitis vinifera]
gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 147/273 (53%), Gaps = 23/273 (8%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T + ++ C +L G LH + +S V V TAL DMY + S ++F +
Sbjct: 327 TLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKT 386
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
++ WN II+G + +G SR +A+ LF++M E +P++ T+ ++LPA
Sbjct: 387 SKQRTAPWNAIISGCIH-----NGLSR-----KAIELFKQMLM-EAVDPNDATLNSLLPA 435
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
+++ + +HGY + GF + I V+ LID Y+KCG + SA +F K++
Sbjct: 436 YAFLTDLQQARNMHGYLIRSGFLS-RIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDI 494
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKFFDK 254
++W+ II+G+ MHG G+ A+ F++M + G+KPN + +EGL F
Sbjct: 495 ITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKF 554
Query: 255 MVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
M+E+ ++ HY C+ID+L RAGRLE+A E+
Sbjct: 555 MLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYEL 587
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 127/249 (51%), Gaps = 23/249 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++TY F+I+ C P +G +HA GF S +V +L MY++ G ++ + ++F
Sbjct: 122 DNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVF 181
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + ER LV+WN +I+GY + EAL +F M + EP T+++V
Sbjct: 182 DLMRERTLVSWNT----------MINGYFKNGCVKEALMVFDWMIG-KGIEPDCATVVSV 230
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LP E+ + +H E + DI V N L+D YAKCG + A +F + +D+
Sbjct: 231 LPVCSYLKELEVGRRVHALVEVKNLGE-DISVWNSLLDMYAKCGNMDEAQMIFYE--MDK 287
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVL 262
+++VSWTT+++G+ ++G + A+ + MQ +KPN ++ C L
Sbjct: 288 RDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPN---------FVTLASVLSACASL 338
Query: 263 PDIKHYGCL 271
+KH CL
Sbjct: 339 YSLKHGRCL 347
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 135/289 (46%), Gaps = 24/289 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ C L +G ++HA+ + V +L DMY G + ++ +F
Sbjct: 223 DCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIF 282
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E+ +R++V+W ++ G I++G +R + L +M E +P+ +T+ +V
Sbjct: 283 YEMDKRDVVSWTTMMNGY-----ILNGDAR------SALLLCQMMQFESVKPNFVTLASV 331
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A +++ + +HG+ ++ + ++ V LID YAKC + + ++F TS R
Sbjct: 332 LSACASLYSLKHGRCLHGWAIRQKLES-EVIVETALIDMYAKCNNVNLSFRVFSKTSKQR 390
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS----------WRIGEEGLKFF 252
W IISG +G+ ++A+E F++M + PN + + + +
Sbjct: 391 T--APWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNM 448
Query: 253 DKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ L I+ LIDI + G LE A + +GIP + +++ W
Sbjct: 449 HGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITW 497
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 136/305 (44%), Gaps = 37/305 (12%)
Query: 27 YSFLIRTCVTL-SYPNLGTQLHAVFSKVGFQSHVYVN---TALGDMYVSLGFLKDSSKLF 82
Y L++ C + S PN Q+HA +G S Y + ++L Y G + KLF
Sbjct: 21 YQSLLQRCTSRKSIPNT-KQIHAHTITLGLLSSPYSHHLLSSLAAAYAMFGCAPHARKLF 79
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DEL +L +WN +I Y+ S +AL LF +M A P T V
Sbjct: 80 DELRNPSLFSWN----------AMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFV 129
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A LIH GF++ D V N L+ Y CG + A ++F+ +
Sbjct: 130 IKACGDYLLPEMGALIHARTVMSGFDS-DAFVQNSLMAMYMNCGEMEVARRVFD--LMRE 186
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+ LVSW T+I+G+ +G KEA+ F+ M G++P+ + + E G +
Sbjct: 187 RTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRV 246
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLIN 311
+VE + DI + L+D+ + G +++A+ + + + +VV W T ++N
Sbjct: 247 H-ALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKR--DVVSWTT-----MMN 298
Query: 312 SYFFS 316
Y +
Sbjct: 299 GYILN 303
>gi|147799847|emb|CAN66059.1| hypothetical protein VITISV_017037 [Vitis vinifera]
Length = 546
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/350 (28%), Positives = 156/350 (44%), Gaps = 80/350 (22%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY------------- 69
D FTY LI+ C + G H + G V+V T+L D+Y
Sbjct: 122 DKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGGDVFVMTSLIDLYGKCGEILCARKVF 181
Query: 70 ------------------VSLGFLKDSSKLFDELPERNLVTWNVIITGLVK--------- 102
S L ++ KLFDE+PE+N V+WN II+G VK
Sbjct: 182 DEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNAVSWNAIISGYVKCGDLRSARK 241
Query: 103 ------------WTGIIDGYSRMNRSNEAL---------------ALFRRMAACEYTEPS 135
+T +IDGY++ A AL R+ A +P
Sbjct: 242 MFDEMPHRNVVSFTTMIDGYAKSGDMASARFVFEEAPERDVVAWSALIFRVCAEWNVKPD 301
Query: 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
E +++++ A + G + + + Y K + HV LID AKCG + A+KLF
Sbjct: 302 EFIMVSLMSACSQMGSLELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLF 361
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN---------RSWRIG- 245
E+ + +++L+S+ +++ G ++HG G +AV F RM GL P+ R G
Sbjct: 362 EE--MPKRDLISYCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGL 419
Query: 246 -EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
+EG +F+ M + ++P HY C++D+L RAGRL++A E+ +P +
Sbjct: 420 VDEGCYYFESMKTDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVE 469
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 131/304 (43%), Gaps = 40/304 (13%)
Query: 18 LPPL--FDSFT-YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF 74
LP L FD+ + S L++ C T S Q+HA + G ++ + + SL
Sbjct: 16 LPTLRSFDTTSSISTLLKACTTTSTLE---QVHARIIRKGLHQDHFLISQFLTLCNSLSN 72
Query: 75 LKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134
++ +F+ + + V WN I GYS + ++LF RM + P
Sbjct: 73 FSYTTSVFNGVSSPSTVLWNTY----------IKGYSENYSVSLTVSLFIRMKRSDAV-P 121
Query: 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194
+ T +++ A K V+ HG + G D+ V LID Y KCG I A K+
Sbjct: 122 DKFTYPSLIKACSKVCGVKEGVAFHGSAVRCGVGG-DVFVMTSLIDLYGKCGEILCARKV 180
Query: 195 FEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW--------RIGE 246
F++ + +N+VSWT +I+G+A EA + F+ M + K SW + G+
Sbjct: 181 FDE--MGERNVVSWTAMIAGYASFSDLVEARKLFDEMPE---KNAVSWNAIISGYVKCGD 235
Query: 247 --EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTG 304
K FD+M ++ + +ID ++G + A V P + +VV W
Sbjct: 236 LRSARKMFDEMPHR-----NVVSFTTMIDGYAKSGDMASARFVFEEAPER--DVVAWSAL 288
Query: 305 FLRL 308
R+
Sbjct: 289 IFRV 292
>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 989
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/291 (31%), Positives = 146/291 (50%), Gaps = 28/291 (9%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
+T+ ++ +C L + G Q+HA K + +V TAL DMY +L+D+ F+
Sbjct: 517 YTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNR 576
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
L R+L TW VIIT Y++ N+ +AL FR+M E +P+E T+ L
Sbjct: 577 LSVRDLFTWTVIITN----------YAQTNQGEKALNYFRQMQQ-EGVKPNEFTLAGCLS 625
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
+ Q +H K G + D+ V + L+D YAKCGC+ A LFE ++ R++
Sbjct: 626 GCSSLASLEGGQQLHSMVFKSG-HVSDMFVGSALVDMYAKCGCMEEAEALFE--ALIRRD 682
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFD 253
++W TII G+A +G G +A+ F M G+ P+ G EEG + F+
Sbjct: 683 TIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFN 742
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP-SQITNVVVWRT 303
M + + P + H C++DIL R G+ ++ E+ + SQ N ++W T
Sbjct: 743 SMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQLSQ--NALIWET 791
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 118/247 (47%), Gaps = 24/247 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT + +++ C G +H++ K G++ + ++ L DMY G D+ +F
Sbjct: 313 NEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVF 372
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + ++V W+ +IT L + +S E++ LF M + T P++ TI ++
Sbjct: 373 KTIKKPDIVVWSALITCL----------DQQGQSEESIKLFHLMRLGD-TLPNQYTICSL 421
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G ++ Q IH K GF D+ VSN L+ Y K GC+ +KL+E + VDR
Sbjct: 422 LSAATNTGNLQYGQSIHACVWKYGFET-DVAVSNALVTMYMKNGCVHDGTKLYE-SMVDR 479
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVL 262
+L+SW +SG GM + F M + G PN + F ++ C L
Sbjct: 480 -DLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPN---------MYTFISILGSCSCL 529
Query: 263 PDIKHYG 269
D+ HYG
Sbjct: 530 FDV-HYG 535
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 136/293 (46%), Gaps = 26/293 (8%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L + +T L+ G +HA K GF++ V V+ AL MY+ G + D +K
Sbjct: 412 LPNQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTK 471
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
L++ + +R+L++WN ++GL G+ D L +F M E P+ T +
Sbjct: 472 LYESMVDRDLISWNAYLSGLHD-CGMYD---------RPLTIFYHMLE-EGFIPNMYTFI 520
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
++L + +V + +H + K + + V LID YAKC + A F SV
Sbjct: 521 SILGSCSCLFDVHYGRQVHAHIIKNQLDDNNF-VCTALIDMYAKCMYLEDADVAFNRLSV 579
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR----------SWRIGEEGLK 250
++L +WT II+ +A G++A+ F +MQ+ G+KPN S EG +
Sbjct: 580 --RDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQ 637
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
MV + + D+ L+D+ + G +E+AE + + + T + W T
Sbjct: 638 QLHSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDT--IAWNT 688
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 110/218 (50%), Gaps = 14/218 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT + ++ C +LG Q+HA K+G ++V +AL D+Y G ++ +SK+F
Sbjct: 212 NEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMF 271
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+PE+N VTWNV +++GY++ L LF M + + +E T+ V
Sbjct: 272 IGMPEQNDVTWNV----------LLNGYAQRGDVTGVLKLFCSMMELD-VKCNEFTLTTV 320
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + ++ Q+IH K G+ + + L+D Y+KCG A +F+ ++ +
Sbjct: 321 LKGCANSKNLKQGQVIHSLIIKCGYEGNEF-IGCGLVDMYSKCGLAIDAIGVFK--TIKK 377
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
++V W+ +I+ G +E+++ F M+ PN+
Sbjct: 378 PDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQ 415
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 103/240 (42%), Gaps = 39/240 (16%)
Query: 4 YKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNT 63
++Q+QQ + P + FT + + C +L+ G QLH++ K G S ++V +
Sbjct: 605 FRQMQQ------EGVKP--NEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGS 656
Query: 64 ALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALF 123
AL DMY G ++++ LF+ L R+ + WN II GY++ + N+AL F
Sbjct: 657 ALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIIC----------GYAQNGQGNKALTAF 706
Query: 124 RRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF--DIHVS------ 175
R M E P +T +L A G V K FN+ D +S
Sbjct: 707 RMMLD-EGISPDGVTFTGILSACSHQGLVEE--------GKEHFNSMYRDFGISPTVDHC 757
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQ 232
C++D + G + + + L+ W T++ MH +G++A +Q
Sbjct: 758 ACMVDILGRVGKFDELEDFIQKMQLSQNALI-WETVLGASKMHNNLVLGEKAANKLFELQ 816
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 107/216 (49%), Gaps = 18/216 (8%)
Query: 27 YSFLIRTCVTLSYPNLGTQLHAVFSK--VGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
YS ++R C + + +H + K + SH++V +L ++Y + + + +
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWV--SLVNVYAKCRYSAYARLVLAK 172
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+P+R++V+W +I GLV +G+ +N+++ LF+ M E P+E T+ L
Sbjct: 173 MPDRDVVSWTALIQGLVA-----EGF-----ANDSIYLFQEMQN-EGIMPNEFTLATGLK 221
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A + + +H K G D+ V + L+D YAKCG I ASK+F + +N
Sbjct: 222 ACSLCMALDLGKQMHAQAFKLGL-LLDLFVGSALVDLYAKCGEIELASKMF--IGMPEQN 278
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
V+W +++G+A G ++ F M ++ +K N
Sbjct: 279 DVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNE 314
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 20/166 (12%)
Query: 158 IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAM 217
IHG K N D H+ L++ YAKC +SA + +++VSWT +I G
Sbjct: 134 IHGLIVKDVINP-DSHLWVSLVNVYAKCR--YSAYARLVLAKMPDRDVVSWTALIQGLVA 190
Query: 218 HGMGKEAVENFERMQKVGLKPNR----------SWRIGEEGLKFFDKMVEECEVLPDIKH 267
G +++ F+ MQ G+ PN S + + K + +L D+
Sbjct: 191 EGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFV 250
Query: 268 YGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSY 313
L+D+ + G +E A ++ G+P Q N V W +L+N Y
Sbjct: 251 GSALVDLYAKCGEIELASKMFIGMPEQ--NDVTW-----NVLLNGY 289
>gi|115436706|ref|NP_001043111.1| Os01g0390600 [Oryza sativa Japonica Group]
gi|21328171|dbj|BAC00748.1| pentatricopeptide (PPR) repeat-containing-like protein [Oryza
sativa Japonica Group]
gi|113532642|dbj|BAF05025.1| Os01g0390600 [Oryza sativa Japonica Group]
Length = 657
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 146/305 (47%), Gaps = 36/305 (11%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
L++ C S + G QLH V K GF +H +V L Y S F+ + F + +
Sbjct: 282 LVKACSRHSAVSEGQQLHTVILKNGFDAHAFVQATLIHYYGSCDFIDHAQMQFKLSDKSH 341
Query: 90 LVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALALFRRMAA 128
+ +WN ++ L++ W+ +I GY + SN AL +F M
Sbjct: 342 VASWNALMASLLRRNLVHEARQLFDDMPERDTISWSTLISGYVQSGNSNMALQIFCSMLD 401
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
EP+EIT+ + L A+ +G + + IH Y R D +S LI+ YAKCG I
Sbjct: 402 AG-VEPNEITLASALSAVANSGTLGQARWIHDYIISRSIQLTD-KLSAGLINVYAKCGSI 459
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-LKPNRSWRIG-- 245
A +LF ++ W +II A+HG ++E F ++Q +KPN +G
Sbjct: 460 AEAVQLFNHVKDKSISVSPWNSIICNLAIHGYVNMSLELFSQLQSTTHIKPNSITYLGVL 519
Query: 246 ---------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQIT 296
EG + F+ M ++ + P+IKHYGC++D+L RAG LE+AE + +P +
Sbjct: 520 NACCHAGMVAEGKRQFESMRQQYGIQPEIKHYGCMVDLLCRAGYLEEAELLIKTMPMK-A 578
Query: 297 NVVVW 301
+VV W
Sbjct: 579 DVVAW 583
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 133/339 (39%), Gaps = 65/339 (19%)
Query: 47 HAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK---- 102
H V + G V V T L Y ++ + + +F+ +P+RN VTWN ++ VK
Sbjct: 166 HGVAVRRGLDGFVIVATNLVHAYGAVSQVPSARSIFELMPDRNTVTWNTMLNCYVKAGMI 225
Query: 103 -----------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
W +IDGY + +AL + M +E+ ++ ++ A
Sbjct: 226 NMAAEVFGVIPERDEVSWLTMIDGYMCADFLLQALRTYVAMVGTVGIRANEVILVGLVKA 285
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT------- 198
++ V Q +H K GF+A V LI Y C I A F+ +
Sbjct: 286 CSRHSAVSEGQQLHTVILKNGFDAHAF-VQATLIHYYGSCDFIDHAQMQFKLSDKSHVAS 344
Query: 199 ------SVDRKNLV----------------SWTTIISGFAMHGMGKEAVENFERMQKVGL 236
S+ R+NLV SW+T+ISG+ G A++ F M G+
Sbjct: 345 WNALMASLLRRNLVHEARQLFDDMPERDTISWSTLISGYVQSGNSNMALQIFCSMLDAGV 404
Query: 237 KPNR------------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
+PN S +G + D ++ L D G LI++ + G + +A
Sbjct: 405 EPNEITLASALSAVANSGTLG-QARWIHDYIISRSIQLTDKLSAG-LINVYAKCGSIAEA 462
Query: 285 EEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQ 323
++ + + + +V W + L I+ Y + L SQ
Sbjct: 463 VQLFNHVKDKSISVSPWNSIICNLAIHGYVNMSLELFSQ 501
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 115/265 (43%), Gaps = 50/265 (18%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYV----SLGFLKDSS 79
F S L LS+ G QLHA+ +K G S+++V +L Y SL +
Sbjct: 12 FLVSSLKSAAARLSH---GEQLHALAAKSGLLTSNLFVRNSLLAFYSRVAPSLAY----- 63
Query: 80 KLFDELPE--RNLVTWNVIITGL---------------------VKWTGIIDGYSRMNRS 116
LFDE+P R+ N++++ L V +T +I SR
Sbjct: 64 HLFDEIPPLLRDATAHNILLSALARAGRLERAQCLLAEMPQRDAVSFTTVISALSRSGHP 123
Query: 117 NEALALFRRMAACEYTEPSEITILAVLPAI-WKNGEVRNCQLIHGYGEKRGFNAFDIHVS 175
ALA+FR M E +P+E+T+ VL A+ +G HG +RG + F I +
Sbjct: 124 ERALAVFRDMLT-EAVQPNEVTLAEVLTAMACDHGAPAPVGAAHGVAVRRGLDGFVIVAT 182
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
N L+ Y + SA +FE + +N V+W T+++ + GM A E F G
Sbjct: 183 N-LVHAYGAVSQVPSARSIFE--LMPDRNTVTWNTMLNCYVKAGMINMAAEVF------G 233
Query: 236 LKPNR---SWRIGEEGLKFFDKMVE 257
+ P R SW +G D +++
Sbjct: 234 VIPERDEVSWLTMIDGYMCADFLLQ 258
>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
Length = 980
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 147/275 (53%), Gaps = 26/275 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DS T++ ++ C + LG + ++ + GF+S +++ AL M+V+ G L + LF
Sbjct: 507 DSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLF 566
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+++PER+LV+WN II G V+ + N+ + +M +P +IT +
Sbjct: 567 NDMPERDLVSWNTIIAGFVQ-----------HGENQFAFDYFKMMQESGVKPDQITFTGL 615
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + + +H + + D+ V LI Y KCG I A +F + + +
Sbjct: 616 LNACASPEALTEGRRLHALITEAALDC-DVVVGTGLISMYTKCGSIDDAHLVFHN--LPK 672
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN+ SWT++I+G+A HG GKEA+E F +MQ+ G+KP+ +G +EGL
Sbjct: 673 KNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHH 732
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
F+ M ++ + P ++HYGC++D+ RAG L +A E
Sbjct: 733 FESM-KDFNIEPRMEHYGCMVDLFGRAGLLHEAVE 766
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 146/290 (50%), Gaps = 28/290 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +T+ +++ C + G +L ++ G+ + ++V TAL +M++ G + D+ K+F
Sbjct: 204 DKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVF 263
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ LP R+L+TW +ITGL +R + +A LF+ M E +P ++ +++
Sbjct: 264 NNLPRRDLITWTSMITGL----------ARHRQFKQACNLFQVMEE-EGVQPDKVAFVSL 312
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + + +H ++ G + +I+V L+ Y KCG + A ++F V
Sbjct: 313 LKACNHPEALEQGKRVHARMKEVGLDT-EIYVGTALLSMYTKCGSMEDALEVF--NLVKG 369
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+N+VSWT +I+GFA HG +EA F +M + G++PNR + ++G +
Sbjct: 370 RNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQI 429
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
D++++ + D + L+ + + G L A V I Q NVV W
Sbjct: 430 HDRIIKAGYITDD-RVRTALLSMYAKCGSLMDARNVFERISKQ--NVVAW 476
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 133/289 (46%), Gaps = 28/289 (9%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T+ ++ C S G Q+H K G+ + V TAL MY G L D+ +F+ +
Sbjct: 409 TFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERI 468
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
++N+V WN +IT Y + + + A+A F+ + E +P T ++L
Sbjct: 469 SKQNVVAWNAMIT----------AYVQHEKYDNAVATFQALLK-EGIKPDSSTFTSILNV 517
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
+ + + + GF + D+H+ N L+ + CG + SA LF D + ++L
Sbjct: 518 CKSPDALELGKWVQSLIIRAGFES-DLHIRNALVSMFVNCGDLMSAMNLFND--MPERDL 574
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDK 254
VSW TII+GF HG + A + F+ MQ+ G+KP++ G EG +
Sbjct: 575 VSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASPEALTEGRRLH-A 633
Query: 255 MVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++ E + D+ LI + + G ++ A V +P + NV W +
Sbjct: 634 LITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKK--NVYSWTS 680
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 145/297 (48%), Gaps = 48/297 (16%)
Query: 26 TYSFLIRTCVTLSYPNLGT----QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
TYS L++ C+ + NLG H FSK+ Q +++ L MY G + ++
Sbjct: 106 TYSSLLQLCI--KHKNLGDGERIHNHIKFSKI--QPDIFMWNMLISMYAKCGNTNSAKQI 161
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FDE+P++++ +WN+++ GY + R EA L +M + +P + T +
Sbjct: 162 FDEMPDKDVYSWNLLLG----------GYVQHRRYEEAFRLHEQMVQ-DGVKPDKYTFVY 210
Query: 142 VLPA------IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
+L A + K GE+ + L G+ D+ V LI+ + KCG + A K+F
Sbjct: 211 MLNACADAKNVDKGGELFSLILNAGWDT-------DLFVGTALINMHIKCGGVDDALKVF 263
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG---------- 245
++ R++L++WT++I+G A H K+A F+ M++ G++P++ +
Sbjct: 264 --NNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEA 321
Query: 246 -EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
E+G + +M +E + +I L+ + + G +E A EV + + + NVV W
Sbjct: 322 LEQGKRVHARM-KEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGR--NVVSW 375
>gi|449459276|ref|XP_004147372.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g04780-like [Cucumis sativus]
Length = 502
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 142/273 (52%), Gaps = 24/273 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +T + + V + LG +LH K+GF +V V + + D Y G + D+ K+F
Sbjct: 107 DHYTLPQMFKASVGIGDAYLGKRLHCWTIKLGFVGYVVVGSTVLDFYAKCGIVGDARKVF 166
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++ ++ V+WN +I+ GY R +AL F+RM E +TI +V
Sbjct: 167 DDMIFKDTVSWNSMIS----------GYGRAGVYMDALDCFKRMLL-EGANMDFMTIPSV 215
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G++R + IH K A D+ V N LID Y+KCG + ++ K+F + S R
Sbjct: 216 LNACGGEGDLRKGKEIHCLVLKSPVFAADVAVGNSLIDMYSKCGSLLNSEKVFWNMS--R 273
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
N+V+WTT+IS + HG G++++ F +M+ G++PN EG +
Sbjct: 274 LNIVTWTTMISCYGAHGKGEKSLVLFNKMKDCGIQPNSVTLTAILASCSHAGYINEGWRI 333
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
F ++ + +V P ++HY C +D+L R G L++A
Sbjct: 334 FQSIISDNKVEPTVEHYACAVDLLSRFGFLKEA 366
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 133/289 (46%), Gaps = 29/289 (10%)
Query: 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP 86
+SF++R+C Q HA GF H+ + T L +Y GFL D+ +FD++
Sbjct: 10 FSFVLRSCAQSYAIAQAKQAHAQILIHGFLPHLTLLTDLLLVYCKCGFLHDARNVFDKMA 69
Query: 87 ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI 146
RN+ +WN++I V + D +N NE FR + P T+ + A
Sbjct: 70 HRNMHSWNILIASYVHNSFYFDA---LNVFNE----FRHLGFL----PDHYTLPQMFKAS 118
Query: 147 WKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLV 206
G+ + +H + K GF + + V + ++D YAKCG + A K+F+D K+ V
Sbjct: 119 VGIGDAYLGKRLHCWTIKLGFVGYVV-VGSTVLDFYAKCGIVGDARKVFDDMIF--KDTV 175
Query: 207 SWTTIISGFAMHGMGKEAVENFERMQKVGLK------PNRSWRIGEEGLKFFDKMVEECE 260
SW ++ISG+ G+ +A++ F+RM G P+ G EG K + C
Sbjct: 176 SWNSMISGYGRAGVYMDALDCFKRMLLEGANMDFMTIPSVLNACGGEGDLRKGKEI-HCL 234
Query: 261 VL------PDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
VL D+ LID+ + G L +E+V + N+V W T
Sbjct: 235 VLKSPVFAADVAVGNSLIDMYSKCGSLLNSEKVFWNMSR--LNIVTWTT 281
>gi|125570503|gb|EAZ12018.1| hypothetical protein OsJ_01900 [Oryza sativa Japonica Group]
Length = 657
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 146/305 (47%), Gaps = 36/305 (11%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
L++ C S + G QLH V K GF +H +V L Y S F+ + F + +
Sbjct: 282 LVKACSRHSAVSEGQQLHTVILKNGFDAHAFVQATLIHYYGSCDFIDHAQMQFKLSDKSH 341
Query: 90 LVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALALFRRMAA 128
+ +WN ++ L++ W+ +I GY + SN AL +F M
Sbjct: 342 VASWNALMASLLRRNLVHEARQLFDDMPERDTISWSTLISGYVQSGNSNMALQIFCSMLD 401
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
EP+EIT+ + L A+ +G + + IH Y R D +S LI+ YAKCG I
Sbjct: 402 AG-VEPNEITLASALSAVANSGTLGQARWIHDYIISRSIQLTD-KLSAGLINVYAKCGSI 459
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-LKPNRSWRIG-- 245
A +LF ++ W +II A+HG ++E F ++Q +KPN +G
Sbjct: 460 AEAVQLFNHVKDKSISVSPWNSIICNLAIHGYVNMSLELFSQLQSTTHIKPNSITYLGVL 519
Query: 246 ---------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQIT 296
EG + F+ M ++ + P+IKHYGC++D+L RAG LE+AE + +P +
Sbjct: 520 NACCHAGMVAEGKRQFESMRQQYGIQPEIKHYGCMVDLLCRAGYLEEAELLIKTMPMK-A 578
Query: 297 NVVVW 301
+VV W
Sbjct: 579 DVVAW 583
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/339 (23%), Positives = 133/339 (39%), Gaps = 65/339 (19%)
Query: 47 HAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK---- 102
H V + G V V T L Y ++ + + +F+ +P+RN VTWN ++ VK
Sbjct: 166 HGVAVRRGLDGFVIVATNLVHAYGAVSQVPSARSIFELMPDRNTVTWNTMLNCYVKAGMI 225
Query: 103 -----------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
W +IDGY + +AL + M +E+ ++ ++ A
Sbjct: 226 NMAAEVFGVIPERDEVSWLTMIDGYMCADFLLQALRTYVAMVGTVGIRANEVILVGLVKA 285
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT------- 198
++ V Q +H K GF+A V LI Y C I A F+ +
Sbjct: 286 CSRHSAVSEGQQLHTVILKNGFDAHAF-VQATLIHYYGSCDFIDHAQMQFKLSDKSHVAS 344
Query: 199 ------SVDRKNLV----------------SWTTIISGFAMHGMGKEAVENFERMQKVGL 236
S+ R+NLV SW+T+ISG+ G A++ F M G+
Sbjct: 345 WNALMASLLRRNLVHEARQLFDDMPERDTISWSTLISGYVQSGNSNMALQIFCSMLDAGV 404
Query: 237 KPNR------------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
+PN S +G + D ++ L D G LI++ + G + +A
Sbjct: 405 EPNEITLASALSAVANSGTLG-QARWIHDYIISRSIQLTDKLSAG-LINVYAKCGSIAEA 462
Query: 285 EEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQ 323
++ + + + +V W + L I+ Y + L SQ
Sbjct: 463 VQLFNHVKDKSISVSPWNSIICNLAIHGYVNMSLELFSQ 501
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 74/265 (27%), Positives = 115/265 (43%), Gaps = 50/265 (18%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYV----SLGFLKDSS 79
F S L LS+ G QLHA+ +K G S+++V +L Y SL +
Sbjct: 12 FLVSSLKSAAARLSH---GEQLHALAAKSGLLTSNLFVRNSLLAFYSRVAPSLAY----- 63
Query: 80 KLFDELPE--RNLVTWNVIITGL---------------------VKWTGIIDGYSRMNRS 116
LFDE+P R+ N++++ L V +T +I SR
Sbjct: 64 HLFDEIPPLLRDATAQNILLSALARAGRLERAQCLLAEMPQRDAVSFTTVISALSRSGHP 123
Query: 117 NEALALFRRMAACEYTEPSEITILAVLPAI-WKNGEVRNCQLIHGYGEKRGFNAFDIHVS 175
ALA+FR M E +P+E+T+ VL A+ +G HG +RG + F I +
Sbjct: 124 ERALAVFRDMLT-EAVQPNEVTLAEVLTAMACDHGAPAPVGAAHGVAVRRGLDGFVIVAT 182
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
N L+ Y + SA +FE + +N V+W T+++ + GM A E F G
Sbjct: 183 N-LVHAYGAVSQVPSARSIFE--LMPDRNTVTWNTMLNCYVKAGMINMAAEVF------G 233
Query: 236 LKPNR---SWRIGEEGLKFFDKMVE 257
+ P R SW +G D +++
Sbjct: 234 VIPERDEVSWLTMIDGYMCADFLLQ 258
>gi|356574121|ref|XP_003555200.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g08305-like [Glycine max]
Length = 548
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 151/305 (49%), Gaps = 33/305 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D TY FL++ L G +HA K G +S ++ +L MY + G + K+F
Sbjct: 113 DYLTYPFLVKASARLLNQETGVSVHAHIIKTGHESDRFIQNSLIHMYAACGNSMWAQKVF 172
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
D + ++N+V+WN ++ G K W+ +IDGY + +EA+A
Sbjct: 173 DSIQQKNVVSWNSMLDGYAKCGEMVMAQKAFESMSEKDVRSWSSLIDGYVKAGEYSEAMA 232
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
+F +M + + +E+T+++V A G + ++I+ Y G + + L+D
Sbjct: 233 IFEKMQSAG-PKANEVTMVSVSCACAHMGALEKGRMIYKYIVDNGL-PLTLVLQTSLVDM 290
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG I A +F S + +++ W +I G A HG+ +E+++ F+ MQ VG+ P+
Sbjct: 291 YAKCGAIEEALLIFRRVSKSQTDVLIWNAVIGGLATHGLVEESLKLFKEMQIVGICPDEV 350
Query: 242 WRI------GEEGLK----FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
+ GL FF + + +C + P +HY C++D+L RAG+L A + +
Sbjct: 351 TYLCLLAACAHGGLVKEAWFFFESLSKCGMTPTSEHYACMVDVLARAGQLTTAYQFICQM 410
Query: 292 PSQIT 296
P++ T
Sbjct: 411 PTEPT 415
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 133/306 (43%), Gaps = 65/306 (21%)
Query: 45 QLHAVFSKVG------FQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIIT 98
QLHAV G F S + +AL + G + S ++F +L + +WN II
Sbjct: 32 QLHAVVISCGLSQDDPFISKILCFSALSNS----GDINYSYRVFSQLSSPTIFSWNTII- 86
Query: 99 GLVKWTGIIDGYSRMNRSNEALALFRRM----AACEY-TEP----------SEITILAVL 143
GYS ++L++F +M A +Y T P ++ T ++V
Sbjct: 87 ---------RGYSNSKNPIQSLSIFLKMLRLGVAPDYLTYPFLVKASARLLNQETGVSVH 137
Query: 144 PAIWKNGE-----VRNCQLIHGYG-------EKRGFNAF---DIHVSNCLIDTYAKCGCI 188
I K G ++N LIH Y ++ F++ ++ N ++D YAKCG +
Sbjct: 138 AHIIKTGHESDRFIQN-SLIHMYAACGNSMWAQKVFDSIQQKNVVSWNSMLDGYAKCGEM 196
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG--- 245
A K FE S+ K++ SW+++I G+ G EA+ FE+MQ G K N +
Sbjct: 197 VMAQKAFE--SMSEKDVRSWSSLIDGYVKAGEYSEAMAIFEKMQSAGPKANEVTMVSVSC 254
Query: 246 --------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITN 297
E+G + +V+ L + L+D+ + G +E+A + + T+
Sbjct: 255 ACAHMGALEKGRMIYKYIVDNGLPLTLVLQTS-LVDMYAKCGAIEEALLIFRRVSKSQTD 313
Query: 298 VVVWRT 303
V++W
Sbjct: 314 VLIWNA 319
>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
Length = 697
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 133/252 (52%), Gaps = 26/252 (10%)
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
+N L DMY G L + ++F+ + ER++V+W T +I GY+R S+ ++
Sbjct: 261 LNNCLLDMYSKSGNLNSAIQVFETMGERSVVSW----------TSMIAGYAREGLSDMSV 310
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LF M E P+ IT+ +LPA + Q IHG+ + GF + D HV+N L+D
Sbjct: 311 RLFHEMEK-EDLFPNSITMACILPACASLAALERGQEIHGHILRNGF-SLDRHVANALVD 368
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
Y KCG + A LF+ + K+LVSWT +I+G+ MHG G EA+ F M+ G++P+
Sbjct: 369 MYLKCGALGLARLLFD--MIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDE 426
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
I +EG FF+ M C + P +HY C++D+L RAG L +A +
Sbjct: 427 VSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIK 486
Query: 290 GIPSQITNVVVW 301
+P + + +W
Sbjct: 487 MMPIE-PDATIW 497
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 122/255 (47%), Gaps = 51/255 (20%)
Query: 14 SHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG 73
+ SP P L + TY +++ C L G ++H++ + + + L MYV+ G
Sbjct: 92 NQSPKPDL-ELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCG 150
Query: 74 FLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE 133
L++ ++FD++ + WN+++ +GY+++ E+L+LF+RM
Sbjct: 151 DLREGRRIFDKVANEKVFLWNLLM----------NGYAKIGNFRESLSLFKRM------- 193
Query: 134 PSEITILAVLPAIWKNGEVRNCQLI-----------HGYGEKRGFNAFD----------- 171
E+ I V A E+ + +I +G EK G + F+
Sbjct: 194 -RELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEK-GLDLFEQMLLLGINTDL 251
Query: 172 -------IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
+ ++NCL+D Y+K G + SA ++FE ++ +++VSWT++I+G+A G+ +
Sbjct: 252 ATMVSVELTLNNCLLDMYSKSGNLNSAIQVFE--TMGERSVVSWTSMIAGYAREGLSDMS 309
Query: 225 VENFERMQKVGLKPN 239
V F M+K L PN
Sbjct: 310 VRLFHEMEKEDLFPN 324
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 34/203 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S T + ++ C +L+ G ++H + GF +V AL DMY+ G L + LF
Sbjct: 324 NSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLF 383
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +PE++LV+W V+I GY +EA+A F M EP E++ +++
Sbjct: 384 DMIPEKDLVSWTVMIA----------GYGMHGYGSEAIAAFNEMRN-SGIEPDEVSFISI 432
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN-----------CLIDTYAKCGCIFSA 191
L A +G + G+ F++ +N C++D A+ G + A
Sbjct: 433 LYACSHSGLL-----------DEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKA 481
Query: 192 SKLFEDTSVDRKNLVSWTTIISG 214
K + ++ + W ++ G
Sbjct: 482 YKFIKMMPIEPDATI-WGALLCG 503
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 67/137 (48%), Gaps = 26/137 (18%)
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGL 249
SA KLF++ + ++++SW ++ISG+ +G+ ++ ++ FE+M +G+ + + + E
Sbjct: 203 SARKLFDE--LGDRDVISWNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVE-- 258
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLL 309
+ CL+D+ ++G L A +V + + +VV W + +
Sbjct: 259 ---------------LTLNNCLLDMYSKSGNLNSAIQVFETMGER--SVVSWTS-----M 296
Query: 310 INSYFFSPITLNSQRLF 326
I Y ++ S RLF
Sbjct: 297 IAGYAREGLSDMSVRLF 313
>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
Length = 676
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 147/273 (53%), Gaps = 23/273 (8%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T + ++ C +L G LH + +S V V TAL DMY + S ++F +
Sbjct: 327 TLASVLSACASLYSLKHGRCLHGWAIRQKLESEVIVETALIDMYAKCNNVNLSFRVFSKX 386
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
++ WN II+G + +G SR +A+ LF++M E +P++ T+ ++LPA
Sbjct: 387 SKQRTAPWNAIISGCIH-----NGLSR-----KAIELFKQMLM-EAVDPNDATLNSLLPA 435
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
+++ + +HGY + GF + I V+ LID Y+KCG + SA +F K++
Sbjct: 436 YAFLTDLQQARNMHGYLIRSGFLS-RIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDI 494
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKFFDK 254
++W+ II+G+ MHG G+ A+ F++M + G+KPN + +EGL F
Sbjct: 495 ITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLGLFKF 554
Query: 255 MVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
M+E+ ++ HY C+ID+L RAGRLE+A E+
Sbjct: 555 MLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYEL 587
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 127/249 (51%), Gaps = 23/249 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++TY F+I+ C P +G +HA GF S +V +L MY++ G ++ + ++F
Sbjct: 122 DNYTYPFVIKACGDYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVF 181
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + ER LV+WN +I+GY + EAL +F M + EP T+++V
Sbjct: 182 DLMRERTLVSWNT----------MINGYFKNGCVKEALMVFDWMIG-KGIEPDCATVVSV 230
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LP E+ + +H E + DI V N L+D YAKCG + A +F + +D+
Sbjct: 231 LPVCSYLKELEVGRRVHALVEVKNLGE-DISVWNSLLDMYAKCGNMDEAQMIFYE--MDK 287
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVL 262
+++VSWTT+++G+ ++G + A+ + MQ +KPN ++ C L
Sbjct: 288 RDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPN---------FVTLASVLSACASL 338
Query: 263 PDIKHYGCL 271
+KH CL
Sbjct: 339 YSLKHGRCL 347
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/289 (23%), Positives = 134/289 (46%), Gaps = 24/289 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ C L +G ++HA+ + V +L DMY G + ++ +F
Sbjct: 223 DCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIF 282
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E+ +R++V+W ++ G I++G +R + L +M E +P+ +T+ +V
Sbjct: 283 YEMDKRDVVSWTTMMNGY-----ILNGDAR------SALLLCQMMQFESVKPNFVTLASV 331
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A +++ + +HG+ ++ + ++ V LID YAKC + + ++F S R
Sbjct: 332 LSACASLYSLKHGRCLHGWAIRQKLES-EVIVETALIDMYAKCNNVNLSFRVFSKXSKQR 390
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS----------WRIGEEGLKFF 252
W IISG +G+ ++A+E F++M + PN + + + +
Sbjct: 391 T--APWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNM 448
Query: 253 DKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+ L I+ LIDI + G LE A + +GIP + +++ W
Sbjct: 449 HGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITW 497
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/305 (26%), Positives = 136/305 (44%), Gaps = 37/305 (12%)
Query: 27 YSFLIRTCVTL-SYPNLGTQLHAVFSKVGFQSHVYVN---TALGDMYVSLGFLKDSSKLF 82
Y L++ C + S PN Q+HA +G S Y + ++L Y G + KLF
Sbjct: 21 YQSLLQRCTSRKSIPNT-KQIHAHTITLGLLSSPYSHHLLSSLAAAYAMCGCAPHARKLF 79
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DEL +L +WN +I Y+ S +AL LF +M A P T V
Sbjct: 80 DELRNPSLFSWN----------AMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFV 129
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ A LIH GF++ D V N L+ Y CG + A ++F+ +
Sbjct: 130 IKACGDYLLPEMGALIHARTVMSGFDS-DAFVQNSLMAMYMNCGEMEVARRVFD--LMRE 186
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+ LVSW T+I+G+ +G KEA+ F+ M G++P+ + + E G +
Sbjct: 187 RTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRV 246
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLIN 311
+VE + DI + L+D+ + G +++A+ + + + +VV W T ++N
Sbjct: 247 H-ALVEVKNLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKR--DVVSWTT-----MMN 298
Query: 312 SYFFS 316
Y +
Sbjct: 299 GYILN 303
>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
Length = 820
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 146/281 (51%), Gaps = 25/281 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D TY ++ C G ++HA K G S V AL +MY G +KD+ ++F
Sbjct: 346 DRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDARQVF 405
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +P+R++V+ WT ++ GY+ + E+ + F++M + E ++IT + V
Sbjct: 406 DRMPKRDVVS----------WTALVGGYADCGQVVESFSTFKKMLQ-QGVEANKITYMCV 454
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A ++ + IH K G A D+ V+N L+ Y KCG + A ++ E S
Sbjct: 455 LKACSNPVALKWGKEIHAEVVKAGIFA-DLAVANALMSMYFKCGSVEDAIRVSEGMST-- 511
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKF 251
+++V+W T+I G A +G G EA++ FE M+ ++PN R + EEG +
Sbjct: 512 RDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQ 571
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
F M ++ ++P KHY C++DIL RAG L +AE+V +P
Sbjct: 572 FASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMP 612
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 145/289 (50%), Gaps = 26/289 (8%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
TY ++ C +L+ G Q+HA + S V V+TAL MY+ G +KD+ ++F+
Sbjct: 247 ITYMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFEC 306
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
LP R+++ WN +I GLV +G ++ EA +F RM E P +T LA+L
Sbjct: 307 LPNRDVIAWNTMIGGLVD-SGQLE---------EAHGMFHRMLK-ECVAPDRVTYLAILS 355
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A + G + + IH K G + D+ N LI+ Y+K G + A ++F+ + +++
Sbjct: 356 ACARPGGLACGKEIHARAVKDGLVS-DVRFGNALINMYSKAGSMKDARQVFD--RMPKRD 412
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR----------SWRIGEEGLKFFDK 254
+VSWT ++ G+A G E+ F++M + G++ N+ S + + K
Sbjct: 413 VVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHA 472
Query: 255 MVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
V + + D+ L+ + + G +E A V+ G+ ++ +VV W T
Sbjct: 473 EVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTR--DVVTWNT 519
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 145/292 (49%), Gaps = 28/292 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DS+ Y L+++CV +G Q+H + G + +VY+ L +YV G + ++ +LF
Sbjct: 43 DSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLF 102
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D+ +++V+WNV+I+ GY+ EA LF M E EP + T +++
Sbjct: 103 DKFSNKSVVSWNVMIS----------GYAHRGLGQEAFNLFTLMQQ-EGLEPDKFTFVSI 151
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + + +H + G A + V N LI YAKCG + A ++F+ ++
Sbjct: 152 LSACSSPAALNWGREVHVRVMEAGL-ANNATVGNALISMYAKCGSVRDARRVFD--AMAS 208
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-----------SWRIGEEGLKF 251
++ VSWTT+ +A G +E+++ + M + G++P+R S E+G +
Sbjct: 209 RDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQI 268
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
++VE E D++ L + + G ++ A EV +P++ +V+ W T
Sbjct: 269 HAQIVES-EHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNR--DVIAWNT 317
>gi|357507465|ref|XP_003624021.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499036|gb|AES80239.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 632
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 160/315 (50%), Gaps = 57/315 (18%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQL-HAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D T++ +I +C +L P L + + KVGF+ + +V TAL DM+ G L+ + K+
Sbjct: 251 DETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKI 310
Query: 82 FDEL---PERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSN 117
F++L R+ V WN +I+ V W +I GY++ S
Sbjct: 311 FEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESF 370
Query: 118 EALALFRRMAACEYT-EPSEITILAVLPAIWKNGEVRNCQLIHGYGE------KRGFNAF 170
+A+ LF M + E + +P E+T+++V A GE+ G G K
Sbjct: 371 KAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGEL-------GLGNWAVSILKVNHIQI 423
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
I V N LI+ Y++CG + A +F++ + ++LVS+ T+ISGFA HG G E++E +
Sbjct: 424 SISVYNSLINMYSRCGSMQDAVLIFQEMAT--RDLVSYNTLISGFAEHGHGMESIELLSK 481
Query: 231 MQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
M++ G++P+R I +EG + F+ + PD+ HY C+ID+L RAG
Sbjct: 482 MKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESI-----KFPDVDHYACMIDMLGRAG 536
Query: 280 RLEQAEEVASGIPSQ 294
RLE+A ++ +P +
Sbjct: 537 RLEEAMKLIQSMPME 551
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 110/273 (40%), Gaps = 72/273 (26%)
Query: 52 KVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG------------ 99
K G+ YV + +Y G ++ + KLFDE+P+R + WNV+I+G
Sbjct: 112 KSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEAST 171
Query: 100 -------------LVKWTGII-------------------------------DGYSRMNR 115
++ WT +I GY++
Sbjct: 172 LFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGA 231
Query: 116 SNEALALFRRMAACEYTEPSEITILAVLPAIWKNGE-VRNCQLIHGYGEKRGFNAFDIHV 174
E + LF M + +P E T V+ + G+ + ++ +K GF + V
Sbjct: 232 PEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRP-NYFV 290
Query: 175 SNCLIDTYAKCGCIFSASKLFEDTSVDR-KNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
L+D +AKCG + +A K+FE V + ++ V W +IS +A G A F++M +
Sbjct: 291 KTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQ 350
Query: 234 VGLKPNRSW--------RIGE--EGLKFFDKMV 256
+ SW + GE + +K F++M+
Sbjct: 351 ---RDTVSWNSMIAGYTQNGESFKAIKLFEEMI 380
>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g13650-like [Cucumis sativus]
Length = 1037
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 154/293 (52%), Gaps = 26/293 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD+ ++ I C + G Q+HA GF + + +N AL +Y G ++++
Sbjct: 562 FDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLA 621
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+++ ++N ++WN +++GL + GY EAL +F RM E E + T +
Sbjct: 622 FEKIGDKNNISWNSLVSGLAQ-----SGYFE-----EALQVFVRMLRTE-AEVNMFTYGS 670
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+ A ++ Q IH K G+++ + VSN LI YAK G I A + F D S
Sbjct: 671 AISAAASLANIKQGQQIHSMVLKTGYDS-EREVSNSLISLYAKSGSISDAWREFNDMS-- 727
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
+N++SW +I+G++ HG G EA+ FE M+ G+ PN +G +EGL
Sbjct: 728 ERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLD 787
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+F+ M + +++P +HY C++D+L RAG+L++A E +P + ++WRT
Sbjct: 788 YFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIP-ADAMIWRT 839
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 120/241 (49%), Gaps = 26/241 (10%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
F +++Q+Q +P + FTY ++RTC +L LG Q+H K GFQ +VY
Sbjct: 448 FEIFRQMQM-----EGMIP---NQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVY 499
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
V + L DMY G L + ++ LPE ++V+ WT +I GY + + +EAL
Sbjct: 500 VCSVLIDMYAKYGQLALALRILRRLPEDDVVS----------WTAMIAGYVQHDMFSEAL 549
Query: 121 ALFRRMAACEY--TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
LF M EY + I + + A +R Q IH GF A D+ ++N L
Sbjct: 550 QLFEEM---EYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGA-DLSINNAL 605
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
I YA+CG I A FE + KN +SW +++SG A G +EA++ F RM + +
Sbjct: 606 ISLYARCGRIQEAYLAFE--KIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEV 663
Query: 239 N 239
N
Sbjct: 664 N 664
Score = 87.8 bits (216), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 107/215 (49%), Gaps = 14/215 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + L+ C ++ + G QLH+ K G + + + +L D+Y ++ + K F
Sbjct: 361 DCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFF 420
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
N+V WNV++ Y +++ +++ +FR+M E P++ T ++
Sbjct: 421 LXTETENIVLWNVMLV----------AYGQLDNLSDSFEIFRQMQM-EGMIPNQFTYPSI 469
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L G + + IH + K GF +++V + LID YAK G + A ++ D
Sbjct: 470 LRTCTSLGALYLGEQIHTHVIKTGFQ-LNVYVCSVLIDMYAKYGQLALALRILRRLPED- 527
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
++VSWT +I+G+ H M EA++ FE M+ G++
Sbjct: 528 -DVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQ 561
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 14/199 (7%)
Query: 42 LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV 101
LG QLH + K GF S YV L +Y L + ++F + R+ V++N +I+GLV
Sbjct: 279 LGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLV 338
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
+ G+ S+ AL LF +M + +P IT+ ++L A G + +H +
Sbjct: 339 Q-----QGF-----SDRALELFTKMQR-DCLKPDCITVASLLSACASVGALHKGMQLHSH 387
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
K G +A DI + L+D Y+KC + +A K F T + +N+V W ++ +
Sbjct: 388 AIKAGMSA-DIILEGSLLDLYSKCADVETAHKFFLXT--ETENIVLWNVMLVAYGQLDNL 444
Query: 222 KEAVENFERMQKVGLKPNR 240
++ E F +MQ G+ PN+
Sbjct: 445 SDSFEIFRQMQMEGMIPNQ 463
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 146/296 (49%), Gaps = 39/296 (13%)
Query: 23 DSFTYSFLIRTCVTLSYP-NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
+ +T++ +++ CV N Q+H+ GF S V L D+Y G+++ + K+
Sbjct: 158 NGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKV 217
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+ + +++VTW +I+GL S+ EA+ LF M A E P+ + +
Sbjct: 218 FNCICMKDIVTWVAMISGL----------SQNGLEEEAILLFCDMHASEIF-PTPYVLSS 266
Query: 142 VLPA-----IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
VL A +++ GE +C +I K GF++ + +V N L+ Y++ + SA ++F
Sbjct: 267 VLSASTKIQLFELGEQLHCLVI-----KWGFHS-ETYVCNGLVALYSRSRKLISAERIF- 319
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN---------RSWRIG-- 245
++++ ++ VS+ ++ISG G A+E F +MQ+ LKP+ +G
Sbjct: 320 -STMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGAL 378
Query: 246 EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+G++ + + + DI G L+D+ + +E A + + ++ N+V+W
Sbjct: 379 HKGMQLHSHAI-KAGMSADIILEGSLLDLYSKCADVETAHKFF--LXTETENIVLW 431
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 100/215 (46%), Gaps = 17/215 (7%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
Y +L+ C+T +LH SK GF + +L D Y G + K+FDE
Sbjct: 60 NYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDEN 119
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSN-EALALFRRMAACEYTEPSEITILAVLP 144
R++ +WN +I V +SN + LFRRM A E P+ T VL
Sbjct: 120 SNRSVFSWNKMIHVFVA-----------QKSNFQVFCLFRRMLA-EGITPNGYTFAGVLK 167
Query: 145 AIWKNGEVRN-CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
A N + +H GF++ + V+N LID Y+K G I SA K+F + K
Sbjct: 168 ACVGGDIAFNYVKQVHSRTFYYGFDSSPL-VANLLIDLYSKNGYIESAKKVF--NCICMK 224
Query: 204 NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
++V+W +ISG + +G+ +EA+ F M + P
Sbjct: 225 DIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFP 259
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 26/201 (12%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
FTY I +L+ G Q+H++ K G+ S V+ +L +Y G + D+ + F++
Sbjct: 666 FTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFND 725
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ ERN+++WN +IT GYS+ EAL LF M C P+ +T + VL
Sbjct: 726 MSERNVISWNAMIT----------GYSQHGCGMEALRLFEEMKVCGIM-PNHVTFVGVLS 774
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHV-------SNCLIDTYAKCGCIFSASKLFED 197
A G V+ G + F IH C++D + G + A + ++
Sbjct: 775 ACSHIGLVKE-------GLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKE 827
Query: 198 TSVDRKNLVSWTTIISGFAMH 218
+ ++ W T++S +H
Sbjct: 828 MPIPADAMI-WRTLLSACVIH 847
>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Cucumis sativus]
Length = 1037
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 154/293 (52%), Gaps = 26/293 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD+ ++ I C + G Q+HA GF + + +N AL +Y G ++++
Sbjct: 562 FDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLA 621
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+++ ++N ++WN +++GL + GY EAL +F RM E E + T +
Sbjct: 622 FEKIGDKNNISWNSLVSGLAQ-----SGYFE-----EALQVFVRMLRTE-AEVNMFTYGS 670
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+ A ++ Q IH K G+++ + VSN LI YAK G I A + F D S
Sbjct: 671 AISAAASLANIKQGQQIHSMVLKTGYDS-EREVSNSLISLYAKSGSISDAWREFNDMS-- 727
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
+N++SW +I+G++ HG G EA+ FE M+ G+ PN +G +EGL
Sbjct: 728 ERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLD 787
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+F+ M + +++P +HY C++D+L RAG+L++A E +P + ++WRT
Sbjct: 788 YFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIP-ADAMIWRT 839
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 120/241 (49%), Gaps = 26/241 (10%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
F +++Q+Q +P + FTY ++RTC +L LG Q+H K GFQ +VY
Sbjct: 448 FEIFRQMQM-----EGMIP---NQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVY 499
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
V + L DMY G L + ++ LPE ++V+ WT +I GY + + +EAL
Sbjct: 500 VCSVLIDMYAKYGQLALALRILRRLPEDDVVS----------WTAMIAGYVQHDMFSEAL 549
Query: 121 ALFRRMAACEY--TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
LF M EY + I + + A +R Q IH GF A D+ ++N L
Sbjct: 550 QLFEEM---EYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGA-DLSINNAL 605
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
I YA+CG I A FE + KN +SW +++SG A G +EA++ F RM + +
Sbjct: 606 ISLYARCGRIQEAYLAFE--KIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEV 663
Query: 239 N 239
N
Sbjct: 664 N 664
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 107/215 (49%), Gaps = 14/215 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + L+ C ++ + G QLH+ K G + + + +L D+Y ++ + K F
Sbjct: 361 DCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFF 420
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
N+V WNV++ Y +++ +++ +FR+M E P++ T ++
Sbjct: 421 LTTETENIVLWNVMLV----------AYGQLDNLSDSFEIFRQMQM-EGMIPNQFTYPSI 469
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L G + + IH + K GF +++V + LID YAK G + A ++ D
Sbjct: 470 LRTCTSLGALYLGEQIHTHVIKTGFQ-LNVYVCSVLIDMYAKYGQLALALRILRRLPED- 527
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
++VSWT +I+G+ H M EA++ FE M+ G++
Sbjct: 528 -DVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQ 561
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/199 (30%), Positives = 100/199 (50%), Gaps = 14/199 (7%)
Query: 42 LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV 101
LG QLH + K GF S YV L +Y L + ++F + R+ V++N +I+GLV
Sbjct: 279 LGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLV 338
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
+ G+ S+ AL LF +M + +P IT+ ++L A G + +H +
Sbjct: 339 Q-----QGF-----SDRALELFTKMQR-DCLKPDCITVASLLSACASVGALHKGMQLHSH 387
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
K G +A DI + L+D Y+KC + +A K F T + +N+V W ++ +
Sbjct: 388 AIKAGMSA-DIILEGSLLDLYSKCADVETAHKFFLTT--ETENIVLWNVMLVAYGQLDNL 444
Query: 222 KEAVENFERMQKVGLKPNR 240
++ E F +MQ G+ PN+
Sbjct: 445 SDSFEIFRQMQMEGMIPNQ 463
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 74/296 (25%), Positives = 146/296 (49%), Gaps = 39/296 (13%)
Query: 23 DSFTYSFLIRTCVTLSYP-NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
+ +T++ +++ CV N Q+H+ GF S V L D+Y G+++ + K+
Sbjct: 158 NGYTFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKV 217
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+ + +++VTW +I+GL S+ EA+ LF M A E P+ + +
Sbjct: 218 FNCICMKDIVTWVAMISGL----------SQNGLEEEAILLFCDMHASEIF-PTPYVLSS 266
Query: 142 VLPA-----IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
VL A +++ GE +C +I K GF++ + +V N L+ Y++ + SA ++F
Sbjct: 267 VLSASTKIQLFELGEQLHCLVI-----KWGFHS-ETYVCNGLVALYSRSRKLISAERIF- 319
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN---------RSWRIG-- 245
++++ ++ VS+ ++ISG G A+E F +MQ+ LKP+ +G
Sbjct: 320 -STMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGAL 378
Query: 246 EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
+G++ + + + DI G L+D+ + +E A + + ++ N+V+W
Sbjct: 379 HKGMQLHSHAI-KAGMSADIILEGSLLDLYSKCADVETAHKFF--LTTETENIVLW 431
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 100/215 (46%), Gaps = 17/215 (7%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
Y +L+ C+T +LH SK GF + +L D Y G + K+FDE
Sbjct: 60 NYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDEN 119
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSN-EALALFRRMAACEYTEPSEITILAVLP 144
R++ +WN +I V +SN + LFRRM A E P+ T VL
Sbjct: 120 SNRSVFSWNKMIHVFVA-----------QKSNFQVFCLFRRMLA-EGITPNGYTFAGVLK 167
Query: 145 AIWKNGEVRN-CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
A N + +H GF++ + V+N LID Y+K G I SA K+F + K
Sbjct: 168 ACVGGDIAFNYVKQVHSRTFYYGFDSSPL-VANLLIDLYSKNGYIESAKKVF--NCICMK 224
Query: 204 NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
++V+W +ISG + +G+ +EA+ F M + P
Sbjct: 225 DIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFP 259
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 91/201 (45%), Gaps = 26/201 (12%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
FTY I +L+ G Q+H++ K G+ S V+ +L +Y G + D+ + F++
Sbjct: 666 FTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFND 725
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ ERN+++WN +IT GYS+ EAL LF M C P+ +T + VL
Sbjct: 726 MSERNVISWNAMIT----------GYSQHGCGMEALRLFEEMKVCGIM-PNHVTFVGVLS 774
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHV-------SNCLIDTYAKCGCIFSASKLFED 197
A G V+ G + F IH C++D + G + A + ++
Sbjct: 775 ACSHIGLVKE-------GLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKE 827
Query: 198 TSVDRKNLVSWTTIISGFAMH 218
+ ++ W T++S +H
Sbjct: 828 MPIPADAMI-WRTLLSACVIH 847
>gi|297810935|ref|XP_002873351.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297319188|gb|EFH49610.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 1281
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 151/316 (47%), Gaps = 46/316 (14%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D TY FL+++ LS +G LH K G + ++++ L MY S + KLF
Sbjct: 853 DHMTYPFLLKSSSRLSNREIGGSLHCSVVKTGLEWDLFISNTLIHMYGSFRDKASARKLF 912
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
DE+P +NLVTWN I+ +V W+ +IDGY + NEAL
Sbjct: 913 DEMPYKNLVTWNSILDSYAKSGDVVSARLVFDEMTMRDVVTWSSMIDGYVKSGEYNEALE 972
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIH------VS 175
+F +M ++ +E+T+++VL A GE+ +++H Y D+H +
Sbjct: 973 IFDQMMRMGSSKANEVTMVSVLCACAHLGELNRGKVVHRY-------ILDVHLPLTVILQ 1025
Query: 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
LID YAKCG I A +F SV + + + W +I G A HG +E++ F +M++
Sbjct: 1026 TSLIDMYAKCGSIGDAWGVFCGASVKKTDALMWNAMIGGLASHGFIRESLLLFHKMRESE 1085
Query: 236 LKPNR-----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
+ P+ + +E FF + +E P +HY C++D+L RAG ++ A
Sbjct: 1086 IDPDEITFLCLLAACSHGGLVKEAWHFFTSL-KESGAEPKSEHYACMVDVLSRAGLVKDA 1144
Query: 285 EEVASGIPSQITNVVV 300
+ S + + T V+
Sbjct: 1145 HDFISEMLIKPTGSVL 1160
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 12/171 (7%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL--ALFRRMAACE 130
G ++++S +FD + E L N + +++ S+ N S+ L A + M C
Sbjct: 155 GLVEEASSVFDRVREMGLCVPNAYT-----YNCLLEAISKSNSSSVELVEARLKEMRDCG 209
Query: 131 YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190
+ + T+ VL NG+ + RG+ D H+S L+ ++ K G +
Sbjct: 210 F-HFDKFTLTPVLQVYCNNGKSERALSVFNEILSRGW--LDEHISTILVVSFCKWGQVDK 266
Query: 191 ASKLFE--DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
A +L E + R N ++ +I GF +A + FE+M+++G+ P+
Sbjct: 267 AFELIEMLEERHIRLNYKTFCVLIHGFVKESRIDKAFQLFEKMRRMGMNPD 317
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 87/234 (37%), Gaps = 34/234 (14%)
Query: 54 GFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE----RNLVTWNVIITGLVKWTGIIDG 109
GF+ + T L G D+ K D++ R++V++ I GL++ G+
Sbjct: 539 GFEPWIKHTTCLVKKLCENGKAVDACKYIDDVAGEGFLRHMVSYTAAIEGLIRNEGV--- 595
Query: 110 YSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNA 169
+ L LFR A + P I ++ A+ K + +G
Sbjct: 596 -------DRGLELFRDTCANGHC-PDVIAYHVLIKALCKACRTTEADNLFNEMVSKGLKP 647
Query: 170 FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN--LVSWTTIISGFAMHGMGKEAVEN 227
+ N +ID + K G I D KN ++++T++I G EA+
Sbjct: 648 -SVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLCASRRPSEAISR 706
Query: 228 FERMQKVGLKPNR-------------SWRIGEEGLKFFDKMVEECEVLPDIKHY 268
+ M+ PNR W E L +F +M EE E+ PD Y
Sbjct: 707 WNEMKGKDCYPNRITFMALIQGLCNCGW--SSEALVYFREM-EEKEMEPDSAVY 757
>gi|414589997|tpg|DAA40568.1| TPA: hypothetical protein ZEAMMB73_314346 [Zea mays]
Length = 627
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/297 (28%), Positives = 149/297 (50%), Gaps = 35/297 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T L C L++P+ G+ +H V + G+ + V+ +L +Y L D+ ++F
Sbjct: 205 DGATLCILADACTELAHPSAGSAIHKVAVQSGWSAMAEVSNSLISLYSKFSLLDDAVRIF 264
Query: 83 DELPERNLVTWNVII---------------------TGLVKWTGIIDGYSRMNRSNEALA 121
+ + R +V+WN +I T ++ WT +I G +R ++EALA
Sbjct: 265 ESMEVRTIVSWNSLIDSYMKLGCVEKATSLFRRVPETNVISWTAMIGGLARNGCADEALA 324
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M A E+ P + T +VL A + + +++H + GF A+ ++V+N L+D
Sbjct: 325 LFIVMLAHEHIHPDDFTFGSVLHACATAASLASGRMVHCRAFRSGFAAY-LYVANSLMDM 383
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
YAKCG + + +F ++ K+LVSW T++ GFA++G EA+ ++ M+ + P+
Sbjct: 384 YAKCGDVEGGTNVF--GAIVNKDLVSWNTMLFGFAINGWANEALVVYDSMKSHEVCPDEV 441
Query: 242 WRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
G E G FF+ MV + P +H C++D+ R+G + +A E+
Sbjct: 442 TFAGLLTACNHSGLLEHGESFFESMVSVHGIQPKPEHLSCILDMYARSGNITKAMEM 498
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 82/327 (25%), Positives = 136/327 (41%), Gaps = 50/327 (15%)
Query: 14 SHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG 73
S +P P D+F+ + + L P G QLHA + G ++ + V L DMY
Sbjct: 67 SRAPAP---DAFSLTAALSAAAALRSPVAGAQLHARLIRAGLRALLPVGNTLVDMYAKCA 123
Query: 74 FLKDSSKLFDELPERNLVTWNVIITGL---------------------VKWTGIIDGYSR 112
D+++ F E+ ERN ++W ++ V W ++ GYSR
Sbjct: 124 RADDAARAFGEMRERNALSWCSLLHAYVVSDHLMLAQELFDQMPNRNNVAWNTLLMGYSR 183
Query: 113 MNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDI 172
+N+ L LF +M A E T+ + A + IH + G++A
Sbjct: 184 SGNANQCLLLFNKMRA-EGMACDGATLCILADACTELAHPSAGSAIHKVAVQSGWSAM-A 241
Query: 173 HVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQ 232
VSN LI Y+K + A ++FE S++ + +VSW ++I + G ++A F R+
Sbjct: 242 EVSNSLISLYSKFSLLDDAVRIFE--SMEVRTIVSWNSLIDSYMKLGCVEKATSLFRRVP 299
Query: 233 KV----------GLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLE 282
+ GL N +E L F M+ + PD +G ++ A L
Sbjct: 300 ETNVISWTAMIGGLARN---GCADEALALFIVMLAHEHIHPDDFTFGSVLHACATAASL- 355
Query: 283 QAEEVASGIPSQITNVVVWRTGFLRLL 309
ASG ++ + +R+GF L
Sbjct: 356 -----ASG---RMVHCRAFRSGFAAYL 374
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 91/188 (48%), Gaps = 15/188 (7%)
Query: 10 IYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY 69
I + +H + P D FT+ ++ C T + G +H + GF +++YV +L DMY
Sbjct: 327 IVMLAHEHIHP--DDFTFGSVLHACATAASLASGRMVHCRAFRSGFAAYLYVANSLMDMY 384
Query: 70 VSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC 129
G ++ + +F + ++LV+WN ++ G I+G+ +NEAL ++ M +
Sbjct: 385 AKCGDVEGGTNVFGAIVNKDLVSWNTMLFGFA-----INGW-----ANEALVVYDSMKSH 434
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQ-LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
E P E+T +L A +G + + + G H+S C++D YA+ G I
Sbjct: 435 EVC-PDEVTFAGLLTACNHSGLLEHGESFFESMVSVHGIQPKPEHLS-CILDMYARSGNI 492
Query: 189 FSASKLFE 196
A ++ +
Sbjct: 493 TKAMEMLD 500
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 27/175 (15%)
Query: 70 VSLGFLKDSSK---LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM 126
SLG D++ +FD +P R+ V WN ++T Y R + +AL LF R
Sbjct: 20 ASLGRAGDAASARAMFDAMPRRDAVAWNAMLT----------AYVRAGQPRDALTLFSRA 69
Query: 127 AACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG 186
A + + A G + +LI + G A + V N L+D YAKC
Sbjct: 70 PAPDAFSLTAALSAAAALRSPVAGAQLHARLI-----RAGLRAL-LPVGNTLVDMYAKCA 123
Query: 187 CIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
A++ F + + +N +SW +++ + + A E F++M PNR+
Sbjct: 124 RADDAARAFGE--MRERNALSWCSLLHAYVVSDHLMLAQELFDQM------PNRN 170
>gi|326507168|dbj|BAJ95661.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/295 (31%), Positives = 150/295 (50%), Gaps = 28/295 (9%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
+ D T + C +G HA+ GF+ + Y+ ++L MY G ++D+ +
Sbjct: 193 MLDDVTLLNALVACARTCMMKVGKLCHALLVTNGFEINCYMGSSLISMYAKCGQVEDARR 252
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD +P+RN V WT +I GY+++ +S EA+ LFR M + + TI
Sbjct: 253 IFDGMPDRNAVC----------WTSMISGYTQLGQSKEAIKLFRDMQIAG-VKVDDATIS 301
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
V+ + + G + + +H Y + G DI V N LID Y+KCG I A +F V
Sbjct: 302 TVVSSCGQMGALDLGRYVHAYCDIHGLGK-DISVKNSLIDMYSKCGDIKKAYDIFCGM-V 359
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNRSWRIG-----------EEG 248
R N SWT I+ GFA +G+ EA++ F +M++ G+ PN +G E+G
Sbjct: 360 KRDNF-SWTVIM-GFAANGLSGEALDLFAQMEEEGGVMPNEITFLGVLTSCSHGGLVEQG 417
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ F +M + P I+HYGC++D+L RA L +AE+ +P + V+WR+
Sbjct: 418 YRHFHRMSSIYGIAPRIEHYGCMVDLLGRAKLLAEAEQFIKEMPIA-PDAVMWRS 471
Score = 100 bits (250), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 132/282 (46%), Gaps = 26/282 (9%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D+++ S + T + +G QLHA+ K+G S +V L +MY S + + +
Sbjct: 91 IDNYSLSAALSTAARMPSVVVGAQLHALSVKLGLSSDTFVLNTLINMYSSCSYPSTARSV 150
Query: 82 FDELPE--RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
D P+ + V+WN II GY N+AL F +MA + ++T+
Sbjct: 151 LDSAPKGASDTVSWNTIIA----------GYIHAGLPNKALQAFSQMAKGQVML-DDVTL 199
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
L L A + ++ +L H GF + ++ + LI YAKCG + A ++F+
Sbjct: 200 LNALVACARTCMMKVGKLCHALLVTNGFE-INCYMGSSLISMYAKCGQVEDARRIFD--G 256
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW------RIGEEGLKFFD 253
+ +N V WT++ISG+ G KEA++ F MQ G+K + + G+ G
Sbjct: 257 MPDRNAVCWTSMISGYTQLGQSKEAIKLFRDMQIAGVKVDDATISTVVSSCGQMGALDLG 316
Query: 254 KMVEE-CEVL---PDIKHYGCLIDILERAGRLEQAEEVASGI 291
+ V C++ DI LID+ + G +++A ++ G+
Sbjct: 317 RYVHAYCDIHGLGKDISVKNSLIDMYSKCGDIKKAYDIFCGM 358
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 81/191 (42%), Gaps = 35/191 (18%)
Query: 131 YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190
Y+ + ++ A +P++ + +H K G ++ D V N LI+ Y+ C +
Sbjct: 94 YSLSAALSTAARMPSVVVGAQ------LHALSVKLGLSS-DTFVLNTLINMYSSCSYPST 146
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLK 250
A + + + VSW TII+G+ G+ +A++ F +M K ++ + +
Sbjct: 147 ARSVLDSAPKGASDTVSWNTIIAGYIHAGLPNKALQAFSQMAK--------GQVMLDDVT 198
Query: 251 FFDKMV-----------EECEVLP-----DIKHY--GCLIDILERAGRLEQAEEVASGIP 292
+ +V + C L +I Y LI + + G++E A + G+P
Sbjct: 199 LLNALVACARTCMMKVGKLCHALLVTNGFEINCYMGSSLISMYAKCGQVEDARRIFDGMP 258
Query: 293 SQITNVVVWRT 303
+ N V W +
Sbjct: 259 DR--NAVCWTS 267
>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 687
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 155/310 (50%), Gaps = 40/310 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ T S ++ C L G ++H + G +++V +AL +Y ++++ +F
Sbjct: 178 NPMTVSSILPACAELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVF 237
Query: 83 DELPERNLVTWNVIITGLVK-------------------------WTGIIDGYSRMNRSN 117
D +P R++V+WN ++T K W +I G RS
Sbjct: 238 DLMPHRDVVSWNGVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSE 297
Query: 118 EALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
EA+ +FR+M + +P+EITI ++LPA + +R + IH Y R + D+ +
Sbjct: 298 EAVEMFRKMQKMGF-KPNEITISSILPACSFSENLRMGKEIHCY-VFRHWKVGDLTSTTA 355
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
L+ YAKCG + + +F+ + RK++V+W T+I AMHG GKEA+ F++M ++
Sbjct: 356 LLYMYAKCGDLNLSRNVFD--MMRRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQ 413
Query: 238 PNR-----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
PN R+ EEG++ F+ M + V PD HY C++DI RAGRL +A +
Sbjct: 414 PNSVTFTGVLSGCSHSRLVEEGVQIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYK 473
Query: 287 VASGIPSQIT 296
G+P + T
Sbjct: 474 FIQGMPMEPT 483
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 105/228 (46%), Gaps = 45/228 (19%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
++H ++ G S V+V AL Y ++ + ++FD+L R++V+W + + VK
Sbjct: 99 EVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLVVRDVVSWTSLSSCYVKC- 157
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
G+ R + + +FR M +P+ +T+ ++LPA + ++++ + IHG+ +
Sbjct: 158 ----GFPR-----KGMDVFREMGW-SGVKPNPMTVSSILPACAELKDLKSGKEIHGFAVR 207
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE---------------------------- 196
G ++ V + L+ YAKC + A +F+
Sbjct: 208 HGM-VVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNKEYEKGFS 266
Query: 197 ---DTSVD--RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
S D R + +W +I G +G +EAVE F +MQK+G KPN
Sbjct: 267 LFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPN 314
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 14/170 (8%)
Query: 70 VSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC 129
+++G + +LFD +P+ + T + +I+ L + SNEA+ ++ +
Sbjct: 23 LNVGDFNRARQLFDNIPQPDPTTCSTLISAL----------TTHGLSNEAIKIYSSLQE- 71
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
+P LA A +G+ + +H + G + D+ V N LI Y KC C+
Sbjct: 72 RGIKPDMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMS-DVFVGNALIHAYGKCKCVE 130
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
A ++F+D V +++VSWT++ S + G ++ ++ F M G+KPN
Sbjct: 131 GARRVFDDLVV--RDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPN 178
>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240 [Vitis vinifera]
Length = 565
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/280 (33%), Positives = 144/280 (51%), Gaps = 34/280 (12%)
Query: 41 NLGTQLHAVFSKVG---FQSH----VYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTW 93
N G +H ++G FQS+ V + TA+ DMY G LK + LF+++P RNLV W
Sbjct: 223 NAGRWVHDRTGQMGLDPFQSNSNFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAW 282
Query: 94 NVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVR 153
N +I Y++ ++NEAL LF M + +P + T L V+ A G +
Sbjct: 283 N----------SMIGAYNQYGQANEALDLFSDMRIAGF-DPDKATFLCVIGACAHLGALV 331
Query: 154 NCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIIS 213
+ Q +H Y K D + L+D YAK G A ++F + + +K++ +WT++I
Sbjct: 332 SGQALHAYVSKTNLTD-DTAIGTALVDMYAKSGDAERAQQVFSE--LQKKDVTAWTSLII 388
Query: 214 GFAMHGMGKEAVENFERMQK-VGLKPNRSWRIG-----------EEGLKFFDKMVEECEV 261
G AMHG G+EA+ F++MQ+ L P+ IG E+G F M +
Sbjct: 389 GLAMHGHGEEALTFFKKMQEDTALIPDEITYIGVLSACSHVGKVEDGKNHFISMKNVHGI 448
Query: 262 LPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
P +HYGC++D+L RAGRL +AE + +P + N +W
Sbjct: 449 EPTTQHYGCMVDLLSRAGRLGEAERLVEKMPVE-PNTAIW 487
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 164/333 (49%), Gaps = 39/333 (11%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
+Y++++Q ++P D FT+ F+++ C ++ NLG +H K GF+ VY
Sbjct: 92 MYREMRQ---KGYAP-----DHFTFPFVLKACSLVNGYNLGQCVHNCIVKTGFEVDVYAA 143
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALAL 122
TAL MY + G ++ + K+FD++P+ N+V W +I G + + +EA+ +
Sbjct: 144 TALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCIS----------NDCPSEAVRV 193
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNA------FDIHVSN 176
++ M P+EIT++ VL A ++ ++ + +H + G + F++ ++
Sbjct: 194 YKDMELWS-VAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVILAT 252
Query: 177 CLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
++D YAKCG + +A LF + +NLV+W ++I + +G EA++ F M+ G
Sbjct: 253 AIVDMYAKCGSLKTARDLF--NKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIAGF 310
Query: 237 KPNRSWRIGEEGL----------KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
P+++ + G + V + + D L+D+ ++G E+A++
Sbjct: 311 DPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAKSGDAERAQQ 370
Query: 287 VASGIPSQITNVVVWRTGFLRLLINSYFFSPIT 319
V S + Q +V W + + L ++ + +T
Sbjct: 371 VFSEL--QKKDVTAWTSLIIGLAMHGHGEEALT 401
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 114/266 (42%), Gaps = 61/266 (22%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y G L + +F+++ +L WN +I GYS +EAL ++R M
Sbjct: 49 YSDSGNLNYAKSVFNQIDRPSLYIWN----------SMIKGYSISESPDEALTMYREMRQ 98
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY--GE-------KRGFNAFDIHVSNCLI 179
Y P T VL A C L++GY G+ K GF D++ + L+
Sbjct: 99 KGYA-PDHFTFPFVLKA---------CSLVNGYNLGQCVHNCIVKTGFE-VDVYAATALL 147
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
YA CG + +A K+F+D + + N+V+WT++I+G + EAV ++ M+ + PN
Sbjct: 148 QMYAACGDMEAALKVFDD--IPKWNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPN 205
Query: 240 R-------------------SW---RIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILER 277
W R G+ GL F +L ++D+ +
Sbjct: 206 EITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVILAT-----AIVDMYAK 260
Query: 278 AGRLEQAEEVASGIPSQITNVVVWRT 303
G L+ A ++ + +P + N+V W +
Sbjct: 261 CGSLKTARDLFNKMPHR--NLVAWNS 284
>gi|297824945|ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297326194|gb|EFH56614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 599
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 145/290 (50%), Gaps = 35/290 (12%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
F+ F+++ L+ CV L Q H GF S+V ++ ++ D Y G ++ + +
Sbjct: 177 FNEFSFAGLLTACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRC 236
Query: 82 FDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEAL 120
FDE+ +++ W +I+G K WT +I GY R + AL
Sbjct: 237 FDEMTVKDIHIWTTLISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLAL 296
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LFR+M A +P + T + L A +R+ + IHGY + I V++ LID
Sbjct: 297 DLFRKMIAMR-VKPEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAI-VTSSLID 354
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
Y+K G + ++ ++F D+++ V W T+IS A HG+G +A++ + M K + PNR
Sbjct: 355 MYSKSGSLEASERVFR-ICYDKQDCVLWNTMISALAQHGLGHKALQMLDDMIKFRVHPNR 413
Query: 241 SWRI-----------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
+ + EEG+++F+ M + ++PD +HY CLID+L RAG
Sbjct: 414 TTLVVILNACSHSGLVEEGVRWFESMTVQHGIVPDQEHYACLIDLLGRAG 463
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 88/336 (26%), Positives = 143/336 (42%), Gaps = 66/336 (19%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSSKLFDELPER 88
L++ C G +H GF+ + ++ L MY+ G D+ K+FD++ R
Sbjct: 52 LLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLR 111
Query: 89 NLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALALFRR-- 125
NL +WN +++G VK W ++ GY++ +EAL F+
Sbjct: 112 NLYSWNNMVSGFVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELR 171
Query: 126 --------------MAACEYTEPSEITILA---VLPAIWKNGEVRNCQLIHGYGE----- 163
+ AC + ++ A VL A + + V +C +I Y +
Sbjct: 172 RSGIKFNEFSFAGLLTACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQME 231
Query: 164 --KRGFNAF---DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218
KR F+ DIH+ LI YAK G + +A KLF + + KN VSWT +I+G+
Sbjct: 232 SAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAADKLFRE--MPEKNPVSWTALIAGYVRQ 289
Query: 219 GMGKEAVENFERMQKVGLKPNR---------SWRIG--EEGLKFFDKMVEECEVLPDIKH 267
G G A++ F +M + +KP + S I G + M+ V P+
Sbjct: 290 GSGDLALDLFRKMIAMRVKPEQFTFSSCLCASASIASLRHGKQIHGYMI-RTNVRPNAIV 348
Query: 268 YGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
LID+ ++G LE +E V I + V+W T
Sbjct: 349 TSSLIDMYSKSGSLEASERVFR-ICYDKQDCVLWNT 383
>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 2261; Flags: Precursor
gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 850
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 149/292 (51%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT+S + C LS P +G Q+ K G S+ V ++ M+V ++D+ + F
Sbjct: 372 NHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAF 431
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ L E+NLV++N +DG R +A L + E S T ++
Sbjct: 432 ESLSEKNLVSYNT----------FLDGTCRNLNFEQAFKLLSEITERELG-VSAFTFASL 480
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + G +R + IH K G + + V N LI Y+KCG I +AS++F ++
Sbjct: 481 LSGVANVGSIRKGEQIHSQVVKLGLSC-NQPVCNALISMYSKCGSIDTASRVF--NFMEN 537
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+N++SWT++I+GFA HG +E F +M + G+KPN + EG +
Sbjct: 538 RNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRH 597
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ M E+ ++ P ++HY C++D+L RAG L A E + +P Q +V+VWRT
Sbjct: 598 FNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQ-ADVLVWRT 648
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 90/195 (46%), Gaps = 17/195 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL---GFLKDSS 79
D FT S + C L +LG QLH+ + G V +L DMY G + D
Sbjct: 268 DKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDV--ECSLVDMYAKCSADGSVDDCR 325
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
K+FD + + ++++W +ITG +K N + EA+ LF M + EP+ T
Sbjct: 326 KVFDRMEDHSVMSWTALITGYMK---------NCNLATEAINLFSEMITQGHVEPNHFTF 376
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+ A + R + + G KRG A + V+N +I + K + A + FE S
Sbjct: 377 SSAFKACGNLSDPRVGKQVLGQAFKRGL-ASNSSVANSVISMFVKSDRMEDAQRAFE--S 433
Query: 200 VDRKNLVSWTTIISG 214
+ KNLVS+ T + G
Sbjct: 434 LSEKNLVSYNTFLDG 448
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 111/227 (48%), Gaps = 29/227 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVS-LGFLKDSSK 80
+ + Y+ +IR C + +G K G F+S V V +L DM+V +++ K
Sbjct: 165 NDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYK 224
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD++ E N+VTW ++IT ++ G+ R EA+ F M + E + T+
Sbjct: 225 VFDKMSELNVVTWTLMITRCMQM-----GFPR-----EAIRFFLDMVLSGF-ESDKFTLS 273
Query: 141 AVLPAIWKNGEVRNCQL---IHGYGEKRGFNAFDIHVSNCLIDTYAKC---GCIFSASKL 194
+V A E+ N L +H + + G D+ S L+D YAKC G + K+
Sbjct: 274 SVFSAC---AELENLSLGKQLHSWAIRSGL-VDDVECS--LVDMYAKCSADGSVDDCRKV 327
Query: 195 FEDTSVDRKNLVSWTTIISGFAMH-GMGKEAVENFERMQKVG-LKPN 239
F+ ++ +++SWT +I+G+ + + EA+ F M G ++PN
Sbjct: 328 FD--RMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPN 372
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 99/227 (43%), Gaps = 36/227 (15%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
+FT++ L+ + G Q+H+ K+G + V AL MY G + +S++F+
Sbjct: 474 AFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFN 533
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
+ RN+++W +ITG K I L F +M E +P+E+T +A+L
Sbjct: 534 FMENRNVISWTSMITGFAKHGFAI----------RVLETFNQMIE-EGVKPNEVTYVAIL 582
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNA-FDIHVSN-------CLIDTYAKCGCIFSASKLF 195
A G V G+ R FN+ ++ H C++D + G + A + F
Sbjct: 583 SACSHVGLVS-----EGW---RHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFE-F 633
Query: 196 EDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKPN 239
+T + +++ W T + +H +GK A + L PN
Sbjct: 634 INTMPFQADVLVWRTFLGACRVHSNTELGKLAARKI-----LELDPN 675
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 19/224 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
DS T+S L+++C+ LG +HA + + + +L +Y G + +
Sbjct: 60 MDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDV 119
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE----PSEI 137
F+ + R +V V W+ ++ Y R +A+ +F E+ E P++
Sbjct: 120 FETM--RRFGKRDV-----VSWSAMMACYGNNGRELDAIKVF-----VEFLELGLVPNDY 167
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF-SASKLFE 196
AV+ A + V ++ G+ K G D+ V LID + K F +A K+F+
Sbjct: 168 CYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFD 227
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
S N+V+WT +I+ G +EA+ F M G + ++
Sbjct: 228 KMS--ELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDK 269
>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Cucumis sativus]
Length = 705
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 149/273 (54%), Gaps = 18/273 (6%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DSFT S ++ + G ++H + G + +YV ++L DMY + DS ++F
Sbjct: 238 DSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVF 297
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
L ER+ ++WN II G V+ G+ D E L FR+M + +P + ++
Sbjct: 298 TLLTERDGISWNSIIAGCVQ-NGLFD---------EGLRFFRQMLMAK-IKPKSYSFSSI 346
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+PA + + +HGY + GF+ +I +++ L+D YAKCG I +A ++F+ +
Sbjct: 347 MPACAHLTTLHLGKQLHGYITRNGFDE-NIFIASSLVDMYAKCGNIRTAKQIFDRMRL-- 403
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS----WRIGEEGLKFFDKMVEE 258
+++VSWT +I G A+HG +A+E FE+M+ G+K + + +E K+F+ M +
Sbjct: 404 RDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKAVLTACSHGGLVDEAWKYFNSMTRD 463
Query: 259 CEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
+ P ++HY + D+L RAGRLE+A + G+
Sbjct: 464 FGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGM 496
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 115/238 (48%), Gaps = 26/238 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK-- 80
D + ++++C L NLG LH +VG +Y AL +MY L FL++S +
Sbjct: 105 DHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQR 164
Query: 81 -----LFDELPERNLVTWNVII---------------TGLVKWTGIIDGYSRMNRSNEAL 120
+FDE+ ER V + LV W II G +R E L
Sbjct: 165 LGAGEVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETL 224
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
+ R M +P T+ +VLP I +N ++ + IHG ++G +A DI+V++ LID
Sbjct: 225 RMIREMGGANL-KPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDA-DIYVASSLID 282
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
YAKC + + ++F T + ++ +SW +II+G +G+ E + F +M +KP
Sbjct: 283 MYAKCTRVADSCRVF--TLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKP 338
>gi|414883628|tpg|DAA59642.1| TPA: hypothetical protein ZEAMMB73_113196, partial [Zea mays]
Length = 635
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 153/297 (51%), Gaps = 42/297 (14%)
Query: 42 LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP-ERNLVTWNVIITGL 100
+GT +HA+ K G +YV A Y G + K+FDELP R++VTWN ++ G
Sbjct: 150 MGTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGY 209
Query: 101 VK---------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
V+ W+ +I GY + AL +F+ M A + + +E I
Sbjct: 210 VRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVA-QGVKANEAAI 268
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+ L A + G + + +H ++ G +++ LID Y+KCG + +A ++F+ +
Sbjct: 269 VTALSAAAQLGLLEQGKFVHEVVKRVGMT-MSVNLGAALIDMYSKCGSVAAAKEVFD--A 325
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP---------NRSWRIG--EEG 248
+ R+++ +W ++I G A HG+G +AV+ FE+ G P N R G +EG
Sbjct: 326 MPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEG 385
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG--IPSQITNVVVWRT 303
++F M E+ ++ +++HYGC++D+L RAG +++A E+ G IP + V+W T
Sbjct: 386 RRYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRIPP---DPVLWGT 439
>gi|297848568|ref|XP_002892165.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338007|gb|EFH68424.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 429
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/329 (27%), Positives = 162/329 (49%), Gaps = 42/329 (12%)
Query: 4 YKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNT 63
++Q ++ HS D+ +S +++C +P LG +HA K F S+ +V
Sbjct: 28 HEQALTLFRQMHSSFALPLDAHVFSLALKSCAAAFHPVLGGSVHAHSVKSNFLSNPFVGC 87
Query: 64 ALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIIT-----GLVK---------------- 102
AL DMY + + KLFDE+P+RN V WN +I+ G ++
Sbjct: 88 ALLDMYGKCLSVTHARKLFDEIPQRNAVVWNAMISHYTHCGKIQEAVELYEAMDVMPNES 147
Query: 103 -WTGIIDGY-SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHG 160
+ II G+ + S +A+ +R+M + +P+ IT+LA++ A G R + IH
Sbjct: 148 SFNAIIKGFVGTEDGSYKAIEFYRKMIDFRF-KPNLITLLALVSACSAIGAFRLIKEIHS 206
Query: 161 YGEKRGFNAFDIH--VSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218
Y + N + H + + L++ Y +CGCI +FE S+ +++V+W+++IS +A+H
Sbjct: 207 YAFR---NLIEPHPQLKSGLVEAYGRCGCIVYVQLVFE--SMTDRDVVAWSSLISAYALH 261
Query: 219 GMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKFFDKMVEECEVLPDIKH 267
G + A+ F+ M+ + P+ + +E L +F +M + + H
Sbjct: 262 GDAESALRTFQEMESAKVTPDDIAFLNVLKACSHAGLADEALLYFKRMQGDYGLRASRDH 321
Query: 268 YGCLIDILERAGRLEQAEEVASGIPSQIT 296
Y CL+D+L R GR E+A +V +P + T
Sbjct: 322 YSCLVDVLSRVGRFEEAYKVIQAMPEKPT 350
>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
Length = 614
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 104/375 (27%), Positives = 160/375 (42%), Gaps = 97/375 (25%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
P DSFTYSFLI+ + +H+ K+G +V AL D Y G D+
Sbjct: 125 PRRDSFTYSFLIKALSAAGVAPV-RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDAR 183
Query: 80 K-------------------------------LFDELPERNLVTWNVIITG--------- 99
K LFDE+PE++ V+WN I+ G
Sbjct: 184 KVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEA 243
Query: 100 ------------LVKWTGIIDGYSRMNRSNEALALFRRM------------AACEY---- 131
+V W+ ++ GY + A +F +M +AC
Sbjct: 244 AFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLV 303
Query: 132 --------------TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
E ++++L A ++G + + IH Y KR HV N
Sbjct: 304 DEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNL-GRSTHVCNA 362
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
LID + KCGC+ A +F DT +K+ VSW +II GFAMHG G +A+E F +M++ G
Sbjct: 363 LIDMFCKCGCVNRADYVF-DTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFN 421
Query: 238 PNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
P+ I +EG + F M + ++P I+HYGC+ID+L R G +++A +
Sbjct: 422 PDAVTMINVLSACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVD 481
Query: 287 VASGIPSQITNVVVW 301
+ +P + N V+W
Sbjct: 482 LIKSMPWE-PNEVIW 495
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 81/191 (42%), Gaps = 15/191 (7%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD-ELPER 88
++ C +LG ++H K +V AL DM+ G + + +FD E ++
Sbjct: 328 ILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQK 387
Query: 89 NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148
+ V+WN II G++ ++AL LF +M + P +T++ VL A
Sbjct: 388 DSVSWN----------SIIGGFAMHGHGDKALELFAQMKQQGFN-PDAVTMINVLSACTH 436
Query: 149 NGEVRNCQLIHGYGEKRGFNAF-DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
G V + H +R + I C+ID + G I A L + + N V
Sbjct: 437 MGFVDEGRR-HFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWE-PNEVI 494
Query: 208 WTTIISGFAMH 218
W +++S +H
Sbjct: 495 WGSLLSACRLH 505
>gi|115451565|ref|NP_001049383.1| Os03g0216400 [Oryza sativa Japonica Group]
gi|108706851|gb|ABF94646.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113547854|dbj|BAF11297.1| Os03g0216400 [Oryza sativa Japonica Group]
gi|215741245|dbj|BAG97740.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 392
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 151/286 (52%), Gaps = 28/286 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG--FQSHVYVNTALGDMYVSLGFLKDSSK 80
++ T + ++ C L LG +H ++ + G ++ V+ A+ D+Y G L + +
Sbjct: 39 NALTLASVLPACARLGDLALGRAIHGLWLRRGGGHGANPIVDNAVLDVYAKCGALASARR 98
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
LFDE+PER++ W ++ GL +R +A+A+FR M + P++ T++
Sbjct: 99 LFDEMPERDVFAWTTMVWGL----------ARNGSPQDAVAMFRGMLSDGDAAPNDATVV 148
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+ L A+ +G + +C+L+H Y K+G ++ V N LID YAKCG + A K+F +
Sbjct: 149 SALHAVATSGSLVSCKLLHSYAVKQGLGG-ELVVGNALIDAYAKCGDAWLAFKVF--VEL 205
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN------------RSWRIGEEG 248
++VSW TI A+HG +EA++ F M + G++P+ + R+ ++
Sbjct: 206 PETDMVSWGTITRAMAVHGRCREALQLFSLMLRRGVRPDGAVFLALLTACCHAGRV-DQA 264
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
L F M + P +HY C++D RAG+L++A E+ +P++
Sbjct: 265 LLFLGAMARVYGISPRREHYTCVLDACGRAGQLDRAGEIFRQMPAE 310
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 82/142 (57%), Gaps = 8/142 (5%)
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
+V+WT I +R R+ EA+A F RM A P+ +T+ +VLPA + G++ + IH
Sbjct: 8 VVQWTKRISALARSGRAAEAVAAFARMDA----APNALTLASVLPACARLGDLALGRAIH 63
Query: 160 GYGEKR-GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218
G +R G + + V N ++D YAKCG + SA +LF++ + +++ +WTT++ G A +
Sbjct: 64 GLWLRRGGGHGANPIVDNAVLDVYAKCGALASARRLFDE--MPERDVFAWTTMVWGLARN 121
Query: 219 GMGKEAVENFERMQKVG-LKPN 239
G ++AV F M G PN
Sbjct: 122 GSPQDAVAMFRGMLSDGDAAPN 143
>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
lyrata]
gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
lyrata]
Length = 1112
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 103/333 (30%), Positives = 168/333 (50%), Gaps = 35/333 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT+S + C +S P +G Q+ K G S+ V+ ++ M+V ++D+ F
Sbjct: 372 NHFTFSSAFKACGNVSDPRVGKQVLGHAFKRGLASNSSVSNSVISMFVKCDRMEDARTAF 431
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ L E+NLV++N + DG R A L +A E S T ++
Sbjct: 432 ESLSEKNLVSYNTFL----------DGTCRNLDFEHAFELLSEIAERELG-VSAFTFASL 480
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + G +R + IH K G + + V N LI Y+KCG I +AS++F + +D
Sbjct: 481 LSGVANVGSLRKGEQIHSQVLKLGLSC-NQPVCNALISMYSKCGSIDTASRVF--SLMDN 537
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+N++SWT++I+GFA HG + +E F +M K G+KPN + EG +
Sbjct: 538 RNVISWTSMITGFAKHGFAERVLETFNQMTKEGVKPNEVTYVAILSACSHVGLVSEGWRH 597
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT--GFLRLL 309
F+ M E+ ++ P ++HY C++D+L RAG L A E + +P Q +V+VWRT G R+
Sbjct: 598 FNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQ-ADVLVWRTFLGACRVH 656
Query: 310 INSYFFSPITLNSQRLFFF----PAALYALTQI 338
N+ L ++++ F PAA L+ I
Sbjct: 657 SNTELGK---LAARKILEFDPNEPAAYIQLSNI 686
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 91/195 (46%), Gaps = 17/195 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL---GFLKDSS 79
D FT S + C L +LG QLH+ + G V +L DMY G + D
Sbjct: 268 DKFTLSSVFSACAELENLSLGRQLHSWAIRSGLADDV--ECSLVDMYAKCSADGSVDDCR 325
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
K+FD + + ++++W +ITG ++ N + EA+ LF M + EP+ T
Sbjct: 326 KVFDRMQDHSVMSWTALITGYMQ---------NCNLATEAINLFSEMITQGHVEPNHFTF 376
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+ A + R + + G+ KRG A + VSN +I + KC + A FE S
Sbjct: 377 SSAFKACGNVSDPRVGKQVLGHAFKRGL-ASNSSVSNSVISMFVKCDRMEDARTAFE--S 433
Query: 200 VDRKNLVSWTTIISG 214
+ KNLVS+ T + G
Sbjct: 434 LSEKNLVSYNTFLDG 448
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 103/227 (45%), Gaps = 25/227 (11%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
DS T+S L+++C+ + LG +HA + + + +L +Y G L + +
Sbjct: 60 MDSVTFSSLLKSCIRARHFRLGKLVHARLIEFEIEPDSVLYNSLISLYSKSGDLTKAKDV 119
Query: 82 FDEL---PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE----P 134
F+ + +R++V+W+ ++ + R +A+ LF E+ E P
Sbjct: 120 FETMGRFGKRDVVSWSAMMA----------CFGNNGREFDAIKLF-----VEFLEMGLVP 164
Query: 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF-SASK 193
++ AV+ A + V ++I G+ K G D+ V LID + K F +A K
Sbjct: 165 NDYCYTAVIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYK 224
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
+F+ S N+V+WT +I+ G +EA+ F M G + ++
Sbjct: 225 VFDKMS--ELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDK 269
>gi|359492976|ref|XP_002283668.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g11290-like [Vitis vinifera]
Length = 762
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 149/274 (54%), Gaps = 16/274 (5%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT + + C + ++GTQ+H++ K+GF+S++ + ++ +Y+ G++ ++ KLF
Sbjct: 270 NEFTLTSALSLCCVMQSLDIGTQIHSLTIKLGFESNLPIKNSIMYLYLKCGWIHEAKKLF 329
Query: 83 DELPERNLVTWNVIITGLVKWTGII-DGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
DE+ +LVTWN +I G + D + EAL++F ++ +P T +
Sbjct: 330 DEMETISLVTWNAMIAGHARMMDFAKDDLAAHQCGTEALSIFLKLNR-SGMKPDLFTFSS 388
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL + + +H K GF + D+ V L++ Y KCG I ASK F + S+
Sbjct: 389 VLSVCSSLVALEQGEQVHAQTIKTGFLS-DVVVGTALVNMYNKCGSIERASKAFVEMSI- 446
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
+ L+SWT++I+G+A +G ++A+ FE M+ G++PN+ +G +E L
Sbjct: 447 -RTLISWTSMITGYAQNGQPQQALLLFEDMRLAGVRPNKITFVGVLSACSHAGMVDEALD 505
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
+F M E ++ P + HY CLID+ R GRL++A
Sbjct: 506 YFQMMKNEYKITPVMDHYACLIDMFVRLGRLDEA 539
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 16/218 (7%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S Y +++ C+ + ++HA K G ++ T L ++Y G ++ + K+F
Sbjct: 68 ESAFYVPILQECIDKKLVSDAQKIHAHIVKTGAHKDAFLMTFLVNVYAKCGTMETARKVF 127
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM-AACEYTEPSEITILA 141
DELP RN+V+W ++T GY ++ A+ +FR M A Y P+ T+
Sbjct: 128 DELPRRNVVSWTTLMT----------GYVHDSKPELAVQVFREMLEAGAY--PTNYTLGT 175
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A + IHGY K FD + N L Y+KCG + A K F +
Sbjct: 176 ALSASSDLHSKELGKQIHGYSIKYRIE-FDASIGNSLCSLYSKCGSLECAVKAFR--RIR 232
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
KN++SWTT+IS + +G ++ F M ++PN
Sbjct: 233 DKNVISWTTVISAWGDNGEAATGLQFFVEMLSECVEPN 270
>gi|225457491|ref|XP_002267777.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22070
[Vitis vinifera]
gi|296087996|emb|CBI35279.3| unnamed protein product [Vitis vinifera]
Length = 598
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 147/292 (50%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+F +S ++ L +G Q+H K G V + +L DMY+ G L++ K F
Sbjct: 248 DNFAFSGVLSGLAALGDGGMGVQVHGQLVKCGHGGEVCIGNSLVDMYLKCGSLENGIKAF 307
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+E+ ER++ TWN + G + + R+ E + RR ++ T+
Sbjct: 308 EEMVERDVCTWNQMAAGCLN-------CGKPGRALELIEEMRRSG----VRMNKFTLATA 356
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + + HG K G N D+ V N L+D YAKCG + A K+F +V+
Sbjct: 357 LTACANLASLEEGKKAHGLRIKLG-NDVDVCVDNALLDMYAKCGSMGDALKVF--GTVEA 413
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKF 251
+++VSWTT+I GFA +G ++A+E FE+M+ G PN + EG ++
Sbjct: 414 RSVVSWTTMIMGFAQNGQARKALEIFEQMRAEGKAPNYITFICVLYACSQGGLINEGWEY 473
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F M + + P HY C++D+L RAG +++A E+ +P Q + V+VW+T
Sbjct: 474 FLSMDRDHGISPGEDHYACMVDMLGRAGHIKEARELIRRMPFQAS-VLVWQT 524
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 102/230 (44%), Gaps = 28/230 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D Y+ L+R G LHA K + +++N + +MY G L + KLF
Sbjct: 34 DEDLYATLLRRFAETRDSQHGRALHAKLIKGPLHNSLFLNNHILNMYAKCGHLPHAHKLF 93
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D P RN V+W+V+I G V+ NR + AL LF +M A +E T+++
Sbjct: 94 DHFPHRNAVSWSVLIAGFVQ----------HNRPSCALVLFSQMHAAG-VNINEFTLVSA 142
Query: 143 LPA--IWKNGEVRN-----------CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
L A ++ N N ++ + + GF +++ + N + + +
Sbjct: 143 LHACSLYDNDSDNNEGYYYSYYLSRLYQVYAFVVRLGFE-WNVFLMNVFMTALIRSRKLA 201
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
A ++FE + K++VSW +++G G E + RM G+KP+
Sbjct: 202 EALEVFE--ACRGKDVVSWNAVMAGLVQFCCG-EVPGFWRRMCCEGVKPD 248
>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
Length = 627
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/296 (31%), Positives = 147/296 (49%), Gaps = 41/296 (13%)
Query: 42 LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGL- 100
LG Q+H G + V AL DMY + + K+FD + R++V+W +++GL
Sbjct: 141 LGMQVHGRVVGSGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLA 200
Query: 101 --------------------VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS--EIT 138
V WT +IDGY R EAL +FR M +Y+ S E T
Sbjct: 201 RLGQVDEARDLFDRMPERDTVSWTAMIDGYVWAARFREALEMFREM---QYSNVSADEFT 257
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+++V+ A + G + + + Y ++G D V N LID Y+KCG I A +F+
Sbjct: 258 MVSVITACAQLGALEMGEWVRVYMSRQGIK-MDAFVGNALIDMYSKCGSIERALDVFK-- 314
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EE 247
+ ++ +WT II G A++G +EA+E F RM +V P+ IG ++
Sbjct: 315 GMHHRDKFTWTAIILGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDK 374
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
G +FF M+E + P++ HYGC+ID+L RAG++ +A + +P N +W T
Sbjct: 375 GREFFLSMIEAYNIAPNVVHYGCIIDLLGRAGKITEALDTIDQMP-MTPNSTIWGT 429
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 84/202 (41%), Gaps = 22/202 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT +I C L +G + S+ G + +V AL DMY G ++ + +F
Sbjct: 254 DEFTMVSVITACAQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVF 313
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ R+ TW II GL ++GY EA+ +F RM T P E+T + V
Sbjct: 314 KGMHHRDKFTWTAIILGLA-----VNGY-----EEEAIEMFHRMIRVSET-PDEVTFIGV 362
Query: 143 LPAIWKNGEVRNCQ-----LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
L A G V + +I Y A ++ C+ID + G I A +
Sbjct: 363 LTACTHAGLVDKGREFFLSMIEAYN-----IAPNVVHYGCIIDLLGRAGKITEALDTIDQ 417
Query: 198 TSVDRKNLVSWTTIISGFAMHG 219
+ N W T+++ +HG
Sbjct: 418 MPMT-PNSTIWGTLLAACRVHG 438
>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
Length = 1408
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 152/316 (48%), Gaps = 54/316 (17%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S + + +++ L + N+G + H + GF VYV T+L DMYV L + +F
Sbjct: 910 NSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVF 969
Query: 83 DELPERNLVTWNVIITG-------------------------LVKWTGIIDGYSRMNRSN 117
D + RN+ WN +++G LV W G+I GY+ +
Sbjct: 970 DNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCAR 1029
Query: 118 EALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
+A P+ +I +L A ++ + IH + GF D+ V+
Sbjct: 1030 KAFM------------PNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIE-DVFVATA 1076
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
LID Y+K + +A K+F + K L SW +I GFA+ G+GKEA+ F MQKVG+
Sbjct: 1077 LIDMYSKSSSLKNAHKVFR--RIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVG 1134
Query: 238 PN------------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAE 285
P+ S IG EG K+FD M+ + ++P ++HY C++D+L RAG L++A
Sbjct: 1135 PDAITFTALLSACKNSGLIG-EGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAW 1193
Query: 286 EVASGIPSQITNVVVW 301
++ +P + + +W
Sbjct: 1194 DLIHTMPLK-PDATIW 1208
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 110/220 (50%), Gaps = 16/220 (7%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
+FDS YS ++TC + LG ++H K GF VY+ AL + Y L+ +++
Sbjct: 671 VFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQ 730
Query: 81 LFDELPERNLVTWN-VIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
+F E+P + WN II L + + + + LFR+M + + TI
Sbjct: 731 VFHEMPNPEALLWNEAIILNL-----------QSEKLQKGVELFRKM-QFSFLKAETATI 778
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+ VL A K G + + IHGY + G ++ D+ + N LI Y+K G + A ++F+ S
Sbjct: 779 VRVLQACGKMGALNAAKQIHGYVFRFGLDS-DVSLCNPLISMYSKNGKLELARRVFD--S 835
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
++ +N SW ++IS +A G +A F ++ +KP+
Sbjct: 836 MENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPD 875
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 90/207 (43%), Gaps = 34/207 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S + + L+R C +LS G ++H + + GF V+V TAL DMY LK++ K+F
Sbjct: 1035 NSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVF 1094
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ + L +WN +I G++ EA+++F M P IT A+
Sbjct: 1095 RRIQNKTLASWNCMIM----------GFAIFGLGKEAISVFNEMQKVG-VGPDAITFTAL 1143
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN-----------CLIDTYAKCGCIFSA 191
L A +N LI GE G+ FD +++ C++D + G + A
Sbjct: 1144 LSA------CKNSGLI---GE--GWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEA 1192
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMH 218
L + + + W ++ +H
Sbjct: 1193 WDLIHTMPL-KPDATIWGALLGSCRIH 1218
>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 750
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 138/282 (48%), Gaps = 24/282 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
+DSF +S +++ C +L G Q+HA +K+G + V V T L D Y+ + + +
Sbjct: 281 WDSFVFSVVLKACASLEELRFGKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRA 340
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F E+ E N V+W+ II+ GY +M++ EA+ F+ + + + T +
Sbjct: 341 FQEIREPNDVSWSAIIS----------GYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTS 390
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+ A + +H KR + + LI Y+KCGC+ A ++FE S+D
Sbjct: 391 IFQACSVLADCNIGGQVHADAIKRSLIGSQ-YGESALITMYSKCGCLDDAHEVFE--SMD 447
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
++V+WT ISG A +G EA+ FE+M G+KPN I E+G
Sbjct: 448 NPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKH 507
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+ D M+ + V P I HY C+IDI R+G L++A +P
Sbjct: 508 YLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALRFMKNMP 549
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 135/307 (43%), Gaps = 47/307 (15%)
Query: 19 PPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
PP S Y+ L+++ V ++G Q+HA + G S+ + T + +MYV G+L +
Sbjct: 180 PP---SSMYTTLLKSLVNPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGA 236
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
++FD++ + V WTG++ GY++ R+ +AL LF + E E
Sbjct: 237 KRVFDQMA----------VKKPVAWTGLMVGYTQAGRARDALKLFVDLIT-EGVEWDSFV 285
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
VL A E+R + IH K G ++ V L+D Y KC SA + F++
Sbjct: 286 FSVVLKACASLEELRFGKQIHACVAKLGLEC-EVSVGTPLVDFYIKCSSFESACRAFQE- 343
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEE 258
+ N VSW+ IISG+ +EAV+ F+ ++ S+ + + +
Sbjct: 344 -IREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAVVLNSFT--------YTSIFQA 394
Query: 259 CEVLPDIK-----------------HYG--CLIDILERAGRLEQAEEVASGIPSQITNVV 299
C VL D YG LI + + G L+ A EV + + ++V
Sbjct: 395 CSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDAHEVFESMDN--PDIV 452
Query: 300 VWRTGFL 306
W T F+
Sbjct: 453 AW-TAFI 458
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 25/219 (11%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
+ +SFTY+ + + C L+ N+G Q+HA K Y +AL MY G L D+ +
Sbjct: 382 VLNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDAHE 441
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F+ + ++V WT I G++ ++EAL LF +M +C +P+ +T +
Sbjct: 442 VFESMDNPDIVA----------WTAFISGHAYYGNASEALRLFEKMVSCG-MKPNSVTFI 490
Query: 141 AVLPAIWKNGEVRNCQ-----LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
AVL A G V + ++ Y + +D C+ID YA+ G + A +
Sbjct: 491 AVLTACSHAGLVEQGKHYLDTMLRKYNVAPTIDHYD-----CMIDIYARSGLLDEALRFM 545
Query: 196 EDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERM 231
++ + + +SW +SG H +GK A E ++
Sbjct: 546 KNMPFE-PDAMSWKCFLSGCWTHKNLELGKIAGEELRQL 583
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 96/205 (46%), Gaps = 16/205 (7%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSSKLFD 83
++Y L C L + G LH ++G ++ V + + MY G L+D+ KLFD
Sbjct: 82 YSYQCLFEACRELRSLSHGRLLHNRM-RMGIENPSVLLQNCVLQMYCECGSLEDADKLFD 140
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
E+ + N V+ T +I Y+ ++A+ LF RM PS + +L
Sbjct: 141 EMSDLNAVS----------RTTMISAYAEQGLLDKAVGLFSRMLESGDKPPSSMYT-TLL 189
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
++ + + IH + + G + + + +++ Y KCG + A ++F+ +V K
Sbjct: 190 KSLVNPRALDIGRQIHAHVIRAGLCS-NASIETGIVNMYVKCGWLVGAKRVFDQMAV--K 246
Query: 204 NLVSWTTIISGFAMHGMGKEAVENF 228
V+WT ++ G+ G ++A++ F
Sbjct: 247 KPVAWTGLMVGYTQAGRARDALKLF 271
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 4/131 (3%)
Query: 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF 170
S+ + NEA F+ M + S + + A + + + +L+H + G
Sbjct: 57 SKHGKLNEAFEFFQEMDKAGVS-VSLYSYQCLFEACRELRSLSHGRLLHNR-MRMGIENP 114
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
+ + NC++ Y +CG + A KLF++ S N VS TT+IS +A G+ +AV F R
Sbjct: 115 SVLLQNCVLQMYCECGSLEDADKLFDEMS--DLNAVSRTTMISAYAEQGLLDKAVGLFSR 172
Query: 231 MQKVGLKPNRS 241
M + G KP S
Sbjct: 173 MLESGDKPPSS 183
>gi|221327716|gb|ACM17537.1| putative pentatricopeptide [Oryza australiensis]
Length = 470
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 146/291 (50%), Gaps = 34/291 (11%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D ++ ++R C L LG +H ++G ++V V A DMY L D+ +
Sbjct: 100 LPDRYSVPAMVRACTELPDAVLGAVIHGFAVRLGLMANVVVAAAFLDMYAKAVLLDDAVR 159
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FDE+PER+ + WN ++T GY+R R+ E +F R + + + L
Sbjct: 160 VFDEMPERDAIVWNCMVT----------GYARAGRAAETFDIFSR---AQVEAVNIVNGL 206
Query: 141 AVLPAIW----KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196
+P++ K E+ + IHG + DI V N LI+ YAKCG + + +F
Sbjct: 207 QAVPSVLNICAKESELMKGREIHGMMVRCLAFDSDIAVGNALINMYAKCGRVNVSQAVF- 265
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW-------------R 243
+ + +++VSW+T+I +++HG G++A++ + M G+KPN W
Sbjct: 266 -SGMQERDVVSWSTMIHSYSIHGKGEQALKVYMEMLSQGVKPN--WITFTSVLSSCSHSG 322
Query: 244 IGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
+ EG K F+ M + V P +HY C++D+L RAG +E+A + +P +
Sbjct: 323 LVTEGQKIFESMTKVHGVHPATEHYACMVDLLGRAGAIEEAVGLIRKMPME 373
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/299 (22%), Positives = 128/299 (42%), Gaps = 38/299 (12%)
Query: 28 SFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE 87
S L+R C G Q HA G+ + T L +Y G + + ++FD +P
Sbjct: 10 SALLRRCAAAGAVRPGAQAHARAVVGGWLPDATLETDLVLLYCRCGERERARRVFDRMPA 69
Query: 88 RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIW 147
++ +NV++ + A+ +F R+ A + P ++ A++ A
Sbjct: 70 PSMHAYNVLLAA--------------SPPRYAMEIFSRLLAADLL-PDRYSVPAMVRACT 114
Query: 148 KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
+ + +IHG+ + G A ++ V+ +D YAK + A ++F++ + ++ +
Sbjct: 115 ELPDAVLGAVIHGFAVRLGLMA-NVVVAAAFLDMYAKAVLLDDAVRVFDE--MPERDAIV 171
Query: 208 WTTIISGFAMHGMGKEAVENFER-----------MQKVGLKPNRSWRIGE--EGLKFFDK 254
W +++G+A G E + F R +Q V N + E +G +
Sbjct: 172 WNCMVTGYARAGRAAETFDIFSRAQVEAVNIVNGLQAVPSVLNICAKESELMKGREIHGM 231
Query: 255 MVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSY 313
MV DI LI++ + GR+ ++ V SG+ Q +VV W T +I+SY
Sbjct: 232 MVRCLAFDSDIAVGNALINMYAKCGRVNVSQAVFSGM--QERDVVSWST-----MIHSY 283
>gi|147846491|emb|CAN79511.1| hypothetical protein VITISV_014157 [Vitis vinifera]
Length = 1007
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 152/286 (53%), Gaps = 25/286 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T L+++C P +H++ + G++ + +V +L D Y ++ + KLF
Sbjct: 351 DEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLF 410
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D L ++ V+W+ +I G ++ + +EA+ALF+ M + +P+ +TIL++
Sbjct: 411 DRLKTKDTVSWSAMIAG----------FNHCGKPDEAIALFQEMNQAQ-EKPNGVTILSL 459
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + +++ + HG +RG A ++ V ++D YAKCG I + K F+ +
Sbjct: 460 LEAFSVSADLKRSKWAHGIXIRRGLAA-EVAVGTAILDMYAKCGEIGLSRKAFDQ--IPE 516
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN+VSW +I+ M+G+ ++A+ M+ GLKPN + EEGL F
Sbjct: 517 KNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNXVTTLSVLSACSHGGLVEEGLSF 576
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITN 297
F+ MV++ V P ++HY C++D+L RAG+L A + +P ++ +
Sbjct: 577 FENMVQDHGVEPGLEHYSCMVDMLXRAGKLNXAMNLIEKMPERMRD 622
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 112/231 (48%), Gaps = 14/231 (6%)
Query: 9 QIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDM 68
Q+++ S D T +++ C ++G +H V G ++V ++ DM
Sbjct: 236 QLFLEMXSNAXIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNSIIDM 295
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y + + K F+E+P RN V+WN II+GLV R + +EAL+LF M
Sbjct: 296 YSKXDDHESAFKAFNEMPCRNTVSWNSIISGLV----------RTEKHSEALSLFYSMGK 345
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
+ E+T++ +L + + C+ IH + G+ + V N LID Y+KC I
Sbjct: 346 AGF-RADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYE-LNEFVINSLIDAYSKCDLI 403
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
A KLF+ + K+ VSW+ +I+GF G EA+ F+ M + KPN
Sbjct: 404 ELAWKLFD--RLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPN 452
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 101/214 (47%), Gaps = 14/214 (6%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T I C +L G ++H + GF V +L MY ++ + +LFDE+
Sbjct: 152 TLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYAD-NDMERAEELFDEM 210
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
ER++++W+V +I GY + + AL LF M + E IT+++VL A
Sbjct: 211 CERDVISWSV----------MIGGYVQTGEAXMALQLFLEMXSNAXIELDGITMVSVLKA 260
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
G++ + +HG RG + +D+ V N +ID Y+K SA K F + +N
Sbjct: 261 CANTGDISMGRSVHGVVICRGLD-YDLFVGNSIIDMYSKXDDHESAFKAFNEMPC--RNT 317
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
VSW +IISG EA+ F M K G + +
Sbjct: 318 VSWNSIISGLVRTEKHSEALSLFYSMGKAGFRAD 351
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 93/203 (45%), Gaps = 18/203 (8%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
+++ C +L + G +HA K GF S + D Y+ G L + +FD + R+
Sbjct: 56 ILKACSSLPVRH-GKSIHASLLKQGFDSLTSTGNSXXDFYMKTGALDSALFVFDSMRSRD 114
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
V+WN+ +I G+ S+ L FR+ + EP+ T++ + A
Sbjct: 115 SVSWNI----------MIHGHLSRGASDXGLWWFRQARVIAF-EPNVSTLVLAIHACRSL 163
Query: 150 GEVRNCQLIHGYGEKRGFNAFDI-HVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSW 208
G + +HGY + GF DI V N L+ YA + A +LF++ ++++SW
Sbjct: 164 GAMEEGLKMHGYIIRSGF--LDIPSVQNSLLSMYAD-NDMERAEELFDEMC--ERDVISW 218
Query: 209 TTIISGFAMHGMGKEAVENFERM 231
+ +I G+ G A++ F M
Sbjct: 219 SVMIGGYVQTGEAXMALQLFLEM 241
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 23/168 (13%)
Query: 100 LVKWT-GIIDGYSRMN-RSNEALALFRRM--AACEYTEPSEI-TILAVLPAIWKNGEVRN 154
L W GI D +R S EA + + +M A + T+P+ + +IL ++ VR+
Sbjct: 12 LPNWNLGIKDSTNRKWWDSWEACSRYHQMKKAGAQLTDPTLVHSILKACSSL----PVRH 67
Query: 155 CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISG 214
+ IH K+GF++ N D Y K G + SA LF S+ ++ VSW +I G
Sbjct: 68 GKSIHASLLKQGFDSL-TSTGNSXXDFYMKTGALDSA--LFVFDSMRSRDSVSWNIMIHG 124
Query: 215 FAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKF 251
G + F + + + +PN RS EEGLK
Sbjct: 125 HLSRGASDXGLWWFRQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKM 172
>gi|124360491|gb|ABN08501.1| Tetratricopeptide-like helical [Medicago truncatula]
Length = 575
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/315 (30%), Positives = 160/315 (50%), Gaps = 57/315 (18%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQL-HAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D T++ +I +C +L P L + + KVGF+ + +V TAL DM+ G L+ + K+
Sbjct: 194 DETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRPNYFVKTALLDMHAKCGNLEAAHKI 253
Query: 82 FDEL---PERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSN 117
F++L R+ V WN +I+ V W +I GY++ S
Sbjct: 254 FEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQRDTVSWNSMIAGYTQNGESF 313
Query: 118 EALALFRRMAACEYT-EPSEITILAVLPAIWKNGEVRNCQLIHGYGE------KRGFNAF 170
+A+ LF M + E + +P E+T+++V A GE+ G G K
Sbjct: 314 KAIKLFEEMISSEDSRKPDEVTMVSVFSACGHLGEL-------GLGNWAVSILKVNHIQI 366
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
I V N LI+ Y++CG + A +F++ + ++LVS+ T+ISGFA HG G E++E +
Sbjct: 367 SISVYNSLINMYSRCGSMQDAVLIFQEMAT--RDLVSYNTLISGFAEHGHGMESIELLSK 424
Query: 231 MQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
M++ G++P+R I +EG + F+ + PD+ HY C+ID+L RAG
Sbjct: 425 MKEDGIEPDRITYIAILTACSHAGLLDEGQRLFESI-----KFPDVDHYACMIDMLGRAG 479
Query: 280 RLEQAEEVASGIPSQ 294
RLE+A ++ +P +
Sbjct: 480 RLEEAMKLIQSMPME 494
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 110/273 (40%), Gaps = 72/273 (26%)
Query: 52 KVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG------------ 99
K G+ YV + +Y G ++ + KLFDE+P+R + WNV+I+G
Sbjct: 55 KSGYDRDHYVRNGILGIYAKYGPIEFARKLFDEMPDRTVADWNVMISGYWKCGNEEEAST 114
Query: 100 -------------LVKWTGII-------------------------------DGYSRMNR 115
++ WT +I GY++
Sbjct: 115 LFHVMGDQEISRNVITWTTMITGHAKKGNLKTARMYFDKMPERSVVSWNAMLSGYAQGGA 174
Query: 116 SNEALALFRRMAACEYTEPSEITILAVLPAIWKNGE-VRNCQLIHGYGEKRGFNAFDIHV 174
E + LF M + +P E T V+ + G+ + ++ +K GF + V
Sbjct: 175 PEETIRLFNDMLSPGNVQPDETTWATVISSCSSLGDPCLSESIVRKLDDKVGFRP-NYFV 233
Query: 175 SNCLIDTYAKCGCIFSASKLFEDTSVDR-KNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
L+D +AKCG + +A K+FE V + ++ V W +IS +A G A F++M +
Sbjct: 234 KTALLDMHAKCGNLEAAHKIFEQLGVYKYRSSVPWNAMISAYARVGDLPSAKHLFDKMPQ 293
Query: 234 VGLKPNRSW--------RIGE--EGLKFFDKMV 256
+ SW + GE + +K F++M+
Sbjct: 294 ---RDTVSWNSMIAGYTQNGESFKAIKLFEEMI 323
>gi|218192339|gb|EEC74766.1| hypothetical protein OsI_10533 [Oryza sativa Indica Group]
Length = 392
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 151/286 (52%), Gaps = 28/286 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG--FQSHVYVNTALGDMYVSLGFLKDSSK 80
++ T + ++ C L LG +H ++ + G ++ V+ A+ D+Y G L + +
Sbjct: 39 NALTLASVLPACARLGDLALGRAIHGLWLRRGGGHGANPIVDNAVLDVYAKCGALASARR 98
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
LFDE+PER++ W ++ GL +R +A+A+FR M + P++ T++
Sbjct: 99 LFDEMPERDVFAWTTMVWGL----------ARNGSPQDAVAMFRGMLSDGDAAPNDATVV 148
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+ L A+ +G + +C+L+H Y K+G ++ V N LID YAKCG + A K+F +
Sbjct: 149 SALHAVATSGSLVSCKLLHSYAVKQGLGG-ELVVGNALIDAYAKCGDAWLAFKVF--VEL 205
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN------------RSWRIGEEG 248
++VSW TI A+HG +EA++ F M + G++P+ + R+ ++
Sbjct: 206 PETDMVSWGTITRAMAVHGRCREALQLFSLMLRRGVRPDGAVFLALLTACCHAGRV-DQA 264
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
L F M + P +HY C++D RAG+L++A E+ +P++
Sbjct: 265 LLFLGAMARVYGISPRREHYTCVLDACGRAGQLDRAGEIFRQMPAE 310
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 82/142 (57%), Gaps = 8/142 (5%)
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
+VKWT I +R R+ EA+A F RM A P+ +T+ +VLPA + G++ + IH
Sbjct: 8 VVKWTKRISALARSGRAAEAVAAFARMDA----APNALTLASVLPACARLGDLALGRAIH 63
Query: 160 GYGEKR-GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218
G +R G + + V N ++D YAKCG + SA +LF++ + +++ +WTT++ G A +
Sbjct: 64 GLWLRRGGGHGANPIVDNAVLDVYAKCGALASARRLFDE--MPERDVFAWTTMVWGLARN 121
Query: 219 GMGKEAVENFERMQKVG-LKPN 239
G ++AV F M G PN
Sbjct: 122 GSPQDAVAMFRGMLSDGDAAPN 143
>gi|357467943|ref|XP_003604256.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355505311|gb|AES86453.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 670
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 147/282 (52%), Gaps = 26/282 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
++ T+ ++ C L NLG +H + SK + V+ L DMYV + D+ +LF
Sbjct: 281 NAATFVSILGACGKLGCLNLGKGIHGLVSKYPHGKELVVSNTLMDMYVKCESVTDAKRLF 340
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+PE+++V+W +I+GLV++ E+L LF M + EP + + +V
Sbjct: 341 DEIPEKDIVSWTSMISGLVQYQC----------PQESLDLFYEMLGSGF-EPDGVILTSV 389
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A G + + +H Y + +D+H+ LID YAKCGCI A ++F +
Sbjct: 390 LSACASLGLLDYGRWVHEYIDHSRIK-WDVHIGTSLIDMYAKCGCIEMAQQMF--NLLPS 446
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN+ +W I G A++G G+EA++ F + + G +PN + +EG +
Sbjct: 447 KNIRTWNAYIGGLAINGHGQEALKQFGYLVESGTRPNEITFLAVFSACCHSGLVDEGRSY 506
Query: 252 FDKMVEECEVL-PDIKHYGCLIDILERAGRLEQAEEVASGIP 292
F +M L P ++HYGC++D+L RA +E+A E+ + +P
Sbjct: 507 FKQMTSPPYNLSPWLEHYGCMVDLLCRAELVEEAMELINKMP 548
Score = 106 bits (265), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 147/302 (48%), Gaps = 31/302 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +T ++++C S Q+H + K ++V + +Y G +SK+F
Sbjct: 183 DVYTVPAVLKSCARFSGIAEVKQIHTLAVKTDLWCDMFVQNSFVHVYSICGDTVGASKVF 242
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D +P R++V+ WTG+I GY + N+A+ALF RM P+ T +++
Sbjct: 243 DFMPVRDVVS----------WTGLISGYMKAGLFNDAVALFLRMDVA----PNAATFVSI 288
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A K G + + IHG K + ++ VSN L+D Y KC + A +LF++ +
Sbjct: 289 LGACGKLGCLNLGKGIHGLVSKYP-HGKELVVSNTLMDMYVKCESVTDAKRLFDE--IPE 345
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKF 251
K++VSWT++ISG + +E+++ F M G +P+ S + + G ++
Sbjct: 346 KDIVSWTSMISGLVQYQCPQESLDLFYEMLGSGFEPDGVILTSVLSACASLGLLDYG-RW 404
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLIN 311
+ ++ + D+ LID+ + G +E A+++ + +PS+ N+ W L IN
Sbjct: 405 VHEYIDHSRIKWDVHIGTSLIDMYAKCGCIEMAQQMFNLLPSK--NIRTWNAYIGGLAIN 462
Query: 312 SY 313
+
Sbjct: 463 GH 464
>gi|449443185|ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Cucumis sativus]
gi|449525900|ref|XP_004169954.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g05240-like [Cucumis sativus]
Length = 562
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 143/271 (52%), Gaps = 33/271 (12%)
Query: 43 GTQLHAVFSKVGFQS-------HVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNV 95
G +H ++GF +V + TA+ DMY G L + LFD++P+RNLV WN
Sbjct: 225 GKLVHDRLRQLGFDPFDTNSCFNVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNS 284
Query: 96 IITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNC 155
+I+ YS+ R EAL LF M + P++ T L+V+ A G
Sbjct: 285 MISA----------YSQYGRGAEALRLFVDMEMAGFV-PNKATFLSVISACTHMGFRSTG 333
Query: 156 QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGF 215
+ +H + F+ F + + L+D YAK G +A K+F + + +K++++WTT+ISG
Sbjct: 334 RSLHARALRASFHEF-VAIGTALMDMYAKAGDADTALKIF--SKLRKKDVMAWTTMISGL 390
Query: 216 AMHGMGKEAVENFERMQKVG-LKPNRSWRIG-----------EEGLKFFDKMVEECEVLP 263
A+ G GKEA+ F RM++ + P++ I EEG K F M E + P
Sbjct: 391 AIQGKGKEALNVFRRMEEEAEVAPDQITYIAVLWACSHLGLVEEGQKQFTSMTEVYGIEP 450
Query: 264 DIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
++HYGC+ID+L RAG ++AEE+ +P+Q
Sbjct: 451 TMEHYGCMIDLLSRAGHSKEAEELLMKMPTQ 481
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 122/225 (54%), Gaps = 19/225 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ F+++ C + G +H K GF+ VY ++ L +MYVS G L K+F
Sbjct: 104 DHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGDLNSGLKVF 163
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ +P+ WNV V WT +I G+ ++ EAL LF+ M E EP+EIT+
Sbjct: 164 EFIPK-----WNV-----VAWTSLIAGFVNNDQPKEALRLFKDMEN-EGVEPNEITMTTA 212
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIH------VSNCLIDTYAKCGCIFSASKLFE 196
L A + ++ +L+H + GF+ FD + ++ ++D YAKCG + +A LF+
Sbjct: 213 LAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNVILATAIMDMYAKCGKLVTARNLFD 272
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
+ ++NLV W ++IS ++ +G G EA+ F M+ G PN++
Sbjct: 273 --KMPQRNLVVWNSMISAYSQYGRGAEALRLFVDMEMAGFVPNKA 315
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 89/199 (44%), Gaps = 21/199 (10%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T+ +I C + + + G LHA + F V + TAL DMY G + K+F +L
Sbjct: 316 TFLSVISACTHMGFRSTGRSLHARALRASFHEFVAIGTALMDMYAKAGDADTALKIFSKL 375
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
+++++ W +I+GL I G + EAL +FRRM P +IT +AVL A
Sbjct: 376 RKKDVMAWTTMISGLA-----IQG-----KGKEALNVFRRMEEEAEVAPDQITYIAVLWA 425
Query: 146 IWKNGEVRNCQ-----LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
G V Q + YG + + C+ID ++ G A +L
Sbjct: 426 CSHLGLVEEGQKQFTSMTEVYGIEPTMEHY-----GCMIDLLSRAGHSKEAEELLMKMPT 480
Query: 201 DRKNLVSWTTIISGFAMHG 219
+ N ++I++G M+G
Sbjct: 481 -QPNATILSSILNGCEMYG 498
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 83/168 (49%), Gaps = 14/168 (8%)
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY 131
LG ++ + +FD++ +R + WN +I GY AL ++ M +
Sbjct: 52 LGDIEYARTVFDQINQRTVYIWN----------SMIKGYCNGGDKFGALFMYEEMQRKGF 101
Query: 132 TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191
+ P T VL + Q +H K GF D++ S+CL++ Y CG + S
Sbjct: 102 S-PDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFE-LDVYTSSCLLNMYVSCGDLNSG 159
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
K+FE + + N+V+WT++I+GF + KEA+ F+ M+ G++PN
Sbjct: 160 LKVFE--FIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPN 205
>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
Length = 637
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/297 (29%), Positives = 153/297 (51%), Gaps = 42/297 (14%)
Query: 42 LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP-ERNLVTWNVIITGL 100
+GT +HA+ K G +YV A Y G + K+FDELP R++VTWN ++ G
Sbjct: 150 MGTHVHALAVKAGAAGDLYVRNAQIHFYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGY 209
Query: 101 VK---------------------WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
V+ W+ +I GY + AL +F+ M A + + +E I
Sbjct: 210 VRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVA-QGVKANEAAI 268
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+ L A + G + + +H ++ G +++ LID Y+KCG + +A ++F+ +
Sbjct: 269 VTALSAAAQLGLLEQGKFVHEVVKRVGMT-MSVNLGAALIDMYSKCGSVAAAKEVFD--A 325
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP---------NRSWRIG--EEG 248
+ R+++ +W ++I G A HG+G +AV+ FE+ G P N R G +EG
Sbjct: 326 MPRRDVFAWNSMICGLATHGLGHDAVQLFEKFVSEGFCPTSITFVGVLNACSRTGLVDEG 385
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG--IPSQITNVVVWRT 303
++F M E+ ++ +++HYGC++D+L RAG +++A E+ G IP + V+W T
Sbjct: 386 RRYFKLMAEKYDIESEMEHYGCMVDLLSRAGLVQEAVELIEGMRIPP---DPVLWGT 439
>gi|115477555|ref|NP_001062373.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|50725675|dbj|BAD33141.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113624342|dbj|BAF24287.1| Os08g0538800 [Oryza sativa Japonica Group]
gi|215697775|dbj|BAG91968.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 581
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 154/294 (52%), Gaps = 27/294 (9%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D T ++ C +G+ HA+ GF+ + Y+ ++L MY G ++++ ++
Sbjct: 194 LDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRV 253
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+ +PERN+V WT +I G ++ R EA+ LFR M + + TI
Sbjct: 254 FNRMPERNVVC----------WTSMIAGCTQSGRFKEAVDLFRDMQIAG-VKADDATIAT 302
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
V+ + + G + + +H Y + G ++ V N LID Y+KCG + A ++F +
Sbjct: 303 VVSSCGQMGALDLGRYLHAYCDGHGLGK-ELSVKNSLIDMYSKCGDVNKAYQIFH--GLT 359
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQ-KVGLKPNRSWRIG-----------EEGL 249
++++ +WT +I GFAM+G+ EA++ F +M+ + + PN +G E+G
Sbjct: 360 KRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGY 419
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F +M + ++P I+HYGC++D+L RA L +AE+ +P +VVVWR+
Sbjct: 420 HHFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAEAEQFIKDMPVA-PDVVVWRS 472
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/312 (25%), Positives = 141/312 (45%), Gaps = 24/312 (7%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D+++ + I + ++G+Q HA+ K+ S +V AL +MY S + + +
Sbjct: 91 LDNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLV 150
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
D P W + +V W II GY R N+AL F +MA E E+T+L
Sbjct: 151 LDSAPR-----W---ASDVVSWNTIIAGYIRGGMPNKALQSFHQMAK-EQVRLDEVTLLN 201
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
VL A + G ++ L H GF + ++ + L+ YAKCG + A ++F +
Sbjct: 202 VLVACARTGAMKVGSLCHALVVLNGFE-INCYIGSSLVSMYAKCGMVEEARRVF--NRMP 258
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW------RIGEEGL----KF 251
+N+V WT++I+G G KEAV+ F MQ G+K + + G+ G ++
Sbjct: 259 ERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRY 318
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLIN 311
+ + ++ LID+ + G + +A ++ G+ + +V W + +N
Sbjct: 319 LHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKR--DVFTWTVMIMGFAMN 376
Query: 312 SYFFSPITLNSQ 323
+ L +Q
Sbjct: 377 GLCVEALDLFAQ 388
>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g23330-like [Vitis vinifera]
Length = 709
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 160/294 (54%), Gaps = 30/294 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNL--GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
DSFT S ++ + Y NL G ++H + G+ + V++ ++L DMY + DS +
Sbjct: 235 DSFTLSSVLP--IFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCR 292
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F LP+ + ++WN II G V+ G+ D E L F++M + +P+ ++
Sbjct: 293 VFYMLPQHDGISWNSIIAGCVQ-NGMFD---------EGLKFFQQMLIAK-IKPNHVSFS 341
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+++PA + + +HGY + F+ ++ +++ L+D YAKCG I +A +F+ +
Sbjct: 342 SIMPACAHLTTLHLGKQLHGYIIRSRFDG-NVFIASALVDMYAKCGNIRTARWIFD--KM 398
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGL 249
+ ++VSWT +I G+A+HG +A+ F+RM+ G+KPN + +E
Sbjct: 399 ELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAW 458
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
K+F+ M ++ ++P ++HY + D+L R GRLE+A E S + + T VW T
Sbjct: 459 KYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTG-SVWST 511
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 112/247 (45%), Gaps = 43/247 (17%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV---SLGFLKDSS 79
D + ++++C + G +H ++G +Y AL +MY SL +
Sbjct: 105 DHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYK 164
Query: 80 KLFDE--------------------------LPERNLVTWNVIITGLVKWTGIIDGYSRM 113
K+FDE +P+R++V+WN +I+ G ++
Sbjct: 165 KVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKRDIVSWNTVIS----------GNAQN 214
Query: 114 NRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIH 173
+AL + R M + P T+ +VLP + + + IHGY + G++A D+
Sbjct: 215 GMHEDALMMVREMGNAD-LRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGYDA-DVF 272
Query: 174 VSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
+ + LID YAKC + + ++F + + + +SW +II+G +GM E ++ F++M
Sbjct: 273 IGSSLIDMYAKCTRVDDSCRVF--YMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLI 330
Query: 234 VGLKPNR 240
+KPN
Sbjct: 331 AKIKPNH 337
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 104/238 (43%), Gaps = 34/238 (14%)
Query: 5 KQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTA 64
K QQ+ I P + ++S ++ C L+ +LG QLH + F +V++ +A
Sbjct: 323 KFFQQMLIAKIKP-----NHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASA 377
Query: 65 LGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFR 124
L DMY G ++ + +FD++ + +V WT +I GY+ + +A++LF+
Sbjct: 378 LVDMYAKCGNIRTARWIFDKME----------LYDMVSWTAMIMGYALHGHAYDAISLFK 427
Query: 125 RMAACEYTEPSEITILAVLPAIWKNGEVRNC-----QLIHGYGEKRGFNAFDIHVSNCLI 179
RM E +P+ + +AVL A G V + Y G + +
Sbjct: 428 RMEV-EGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHY-----AAVA 481
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
D + G + A + D ++ V W+T+++ +H +N E +KV K
Sbjct: 482 DLLGRVGRLEEAYEFISDMHIEPTGSV-WSTLLAACRVH-------KNIELAEKVSKK 531
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 101/238 (42%), Gaps = 41/238 (17%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
L++ ++ + QLHA + S ++T L +Y +L L DS +F+ LP
Sbjct: 11 LLQNPSSVKSKSQAKQLHAQILRTSLPSPSLLSTILS-IYSNLNLLHDSLLIFNSLPSPP 69
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM-AACEYTEPSEITILAVLPAIWK 148
+ W II Y+ +L+ F +M A+ +Y P +VL +
Sbjct: 70 TT---------LAWKSIIRCYTSHGLFLHSLSFFIQMLASGKY--PDHNVFPSVLKSCTL 118
Query: 149 NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC---IFSASKLFEDTSVD---- 201
++R + +HG + G FD++ N L++ Y+K + + K+F++
Sbjct: 119 MKDLRFGESVHGCIIRLGM-GFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYS 177
Query: 202 --------------------RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
++++VSW T+ISG A +GM ++A+ M L+P+
Sbjct: 178 KKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPD 235
>gi|222632692|gb|EEE64824.1| hypothetical protein OsJ_19680 [Oryza sativa Japonica Group]
Length = 688
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 151/300 (50%), Gaps = 31/300 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV-SLGFLKDSSKL 81
+ +TY+ +I C +++ LG QLHA ++ GF V +L +Y + G L + +
Sbjct: 281 NEYTYAAVIAACADIAWVCLGEQLHAQAARKGFACARSVANSLVTLYTRAAGCLSAADAV 340
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM---AACEYTEPSEIT 138
F E ++ +V W+ II GY++ + +A ALFR M + C P+E T
Sbjct: 341 FRE----------SVVKDVVSWSAIISGYAQEGLAEDAFALFREMRHHSGC--PRPNEFT 388
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+ ++L + + +H G + + + LID Y K G + A +F
Sbjct: 389 LASLLSVCATAASLDAGRQLHTLAVAAGLEHHAM-IRSALIDMYGKSGSMLDADIVFSHR 447
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EE 247
D ++VSWT +I G+A HG K+A+E F+ M VGLKP+ IG E
Sbjct: 448 VKD--DVVSWTAMIVGYAEHGHSKKALELFQEMCHVGLKPDHVTFIGVLNACCHAGEVEL 505
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLR 307
GL++ ++M + + P +HYGC++D+L RAGR+ +AEE+ I + + VVW T LR
Sbjct: 506 GLRYLNEMNQIYGLYPAKEHYGCVVDLLGRAGRINEAEELIGKIAANERDGVVW-TSLLR 564
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 107/232 (46%), Gaps = 24/232 (10%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
F ++++++ HS P P + FT + L+ C T + + G QLH + G + H
Sbjct: 369 FALFREMRH---HSGCPRP---NEFTLASLLSVCATAASLDAGRQLHTLAVAAGLEHHAM 422
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
+ +AL DMY G + D+ +F + ++V+W T +I GY+ S +AL
Sbjct: 423 IRSALIDMYGKSGSMLDADIVFSHRVKDDVVSW----------TAMIVGYAEHGHSKKAL 472
Query: 121 ALFRRMAACEYT-EPSEITILAVLPAIWKNGEVR-NCQLIHGYGEKRGFNAFDIHVSNCL 178
LF+ M C +P +T + VL A GEV + ++ + G H C+
Sbjct: 473 ELFQEM--CHVGLKPDHVTFIGVLNACCHAGEVELGLRYLNEMNQIYGLYPAKEHY-GCV 529
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVEN 227
+D + G I A +L + + ++ V WT+++ A G GK+A E
Sbjct: 530 VDLLGRAGRINEAEELIGKIAANERDGVVWTSLLRACAARGEEETGKKAAER 581
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 92/194 (47%), Gaps = 17/194 (8%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G ++HA +K+G S YV L +Y + + + R++
Sbjct: 196 GREVHAFCAKLGLDSTPYVANTLATLYARCSDVDRALAAVSRMGTRDVAA---------- 245
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYT---EPSEITILAVLPAIWKNGEVRNCQLIH 159
WT +I Y + R+ EA+ F RM E + P+E T AV+ A V + +H
Sbjct: 246 WTTVISAYVQTGRAKEAIEAFVRMLREESSVAASPNEYTYAAVIAACADIAWVCLGEQLH 305
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAK-CGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218
++GF A V+N L+ Y + GC+ +A +F ++ V K++VSW+ IISG+A
Sbjct: 306 AQAARKGF-ACARSVANSLVTLYTRAAGCLSAADAVFRESVV--KDVVSWSAIISGYAQE 362
Query: 219 GMGKEAVENFERMQ 232
G+ ++A F M+
Sbjct: 363 GLAEDAFALFREMR 376
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 97/234 (41%), Gaps = 45/234 (19%)
Query: 14 SHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG 73
S PL P D F S + ++C A + F H A + G
Sbjct: 85 SSPPLAPA-DPFVLSLVFKSC-------------AAAADARFLPHAASLHAF-----AAG 125
Query: 74 FLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA----C 129
L + K+FDE+P +N+V+W ++ L +R R +EAL F M A C
Sbjct: 126 CLGLALKVFDEMPHKNVVSWTTLVASL----------TRAGRRHEALRRFSEMRASGVHC 175
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
+ + + G + +H + K G ++ +V+N L YA+C +
Sbjct: 176 DSYAYAAALTACADAGLLSRG-----REVHAFCAKLGLDSTP-YVANTLATLYARCSDVD 229
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK----VGLKPN 239
A L + + +++ +WTT+IS + G KEA+E F RM + V PN
Sbjct: 230 RA--LAAVSRMGTRDVAAWTTVISAYVQTGRAKEAIEAFVRMLREESSVAASPN 281
>gi|225428280|ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17210-like [Vitis vinifera]
Length = 742
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 152/286 (53%), Gaps = 25/286 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T L+++C P +H++ + G++ + +V +L D Y ++ + KLF
Sbjct: 351 DEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLF 410
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D L ++ V+W+ +I G ++ + +EA+ALF+ M + +P+ +TIL++
Sbjct: 411 DRLKTKDTVSWSAMIAG----------FNHCGKPDEAIALFQEMNQAQ-EKPNGVTILSL 459
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + +++ + HG +RG A ++ V ++D YAKCG I + K F+ +
Sbjct: 460 LEAFSVSADLKRSKWAHGIAIRRGLAA-EVAVGTAILDMYAKCGEIGLSRKAFDQ--IPE 516
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN+VSW +I+ M+G+ ++A+ M+ GLKPN + EEGL F
Sbjct: 517 KNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVLSACSHGGLVEEGLSF 576
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITN 297
F+ MV++ V P ++HY C++D+L RAG+L A + +P ++ +
Sbjct: 577 FENMVQDHGVEPGLEHYSCMVDMLSRAGKLNSAMNLIEKMPERMRD 622
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 113/235 (48%), Gaps = 14/235 (5%)
Query: 5 KQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTA 64
K Q+++ S D T +++ C ++G +H V G ++V +
Sbjct: 232 KMALQLFLEMTSNASIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDYDLFVGNS 291
Query: 65 LGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFR 124
+ DMY + + K F+E+P RN V+WN II+GLV R + +EAL+LF
Sbjct: 292 IIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGLV----------RTEKHSEALSLFY 341
Query: 125 RMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK 184
M + E+T++ +L + + C+ IH + G+ + V N LID Y+K
Sbjct: 342 SMGKAGF-RADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGYE-LNEFVINSLIDAYSK 399
Query: 185 CGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
C I A KLF+ + K+ VSW+ +I+GF G EA+ F+ M + KPN
Sbjct: 400 CDLIELAWKLFD--RLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPN 452
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 65/214 (30%), Positives = 102/214 (47%), Gaps = 14/214 (6%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T I C +L G ++H + GF V +L MY ++ + +LFDE+
Sbjct: 152 TLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYAD-NDMERAEELFDEM 210
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
ER++++W+V +I GY + + AL LF M + E IT+++VL A
Sbjct: 211 CERDVISWSV----------MIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKA 260
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
G++ + +HG RG + +D+ V N +ID Y+KC SA K F + +N
Sbjct: 261 CANTGDISMGRSVHGVVICRGLD-YDLFVGNSIIDMYSKCDDHESAFKAFNEMPC--RNT 317
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
VSW +IISG EA+ F M K G + +
Sbjct: 318 VSWNSIISGLVRTEKHSEALSLFYSMGKAGFRAD 351
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 98/212 (46%), Gaps = 18/212 (8%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D +++ C +L + G +HA K GF S ++ D Y+ G L +
Sbjct: 47 LTDPTLVHSILKACSSLPVRH-GKSIHASLLKQGFDSLTSTGNSVLDFYMKTGALDSALF 105
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD + R+ V+WN+ +I G+ S++ L FR+ + EP+ T++
Sbjct: 106 VFDSMRSRDSVSWNI----------MIHGHLSRGASDKGLWWFRQARVIAF-EPNVSTLV 154
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDI-HVSNCLIDTYAKCGCIFSASKLFEDTS 199
+ A G + +HGY + GF DI V N L+ YA + A +LF++
Sbjct: 155 LAIHACRSLGAMEEGLKMHGYIIRSGF--LDIPSVQNSLLSMYAD-NDMERAEELFDEMC 211
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
++++SW+ +I G+ G K A++ F M
Sbjct: 212 --ERDVISWSVMIGGYVQTGEAKMALQLFLEM 241
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 21/148 (14%)
Query: 118 EALALFRRM--AACEYTEPSEI-TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHV 174
EA + + +M A + T+P+ + +IL ++ VR+ + IH K+GF++
Sbjct: 32 EACSRYHQMKKAGAQLTDPTLVHSILKACSSL----PVRHGKSIHASLLKQGFDSL-TST 86
Query: 175 SNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
N ++D Y K G + SA LF S+ ++ VSW +I G G + + F + + +
Sbjct: 87 GNSVLDFYMKTGALDSA--LFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARVI 144
Query: 235 GLKPN-----------RSWRIGEEGLKF 251
+PN RS EEGLK
Sbjct: 145 AFEPNVSTLVLAIHACRSLGAMEEGLKM 172
>gi|222631343|gb|EEE63475.1| hypothetical protein OsJ_18289 [Oryza sativa Japonica Group]
Length = 490
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/324 (29%), Positives = 153/324 (47%), Gaps = 47/324 (14%)
Query: 7 LQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALG 66
L + +H LP D+ S + + +G QLH K G + V TAL
Sbjct: 142 LALVRMHGEGFLP---DATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATALI 198
Query: 67 DMYVSLGFLKDSSKLFDELPERNLVTWNVIITGL-------------------------V 101
DMY G + ++FDE ++ + N ++ GL V
Sbjct: 199 DMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVV 258
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
WT I+ + R EA+ LFR M + E EP+ +TI VLPA + + + H +
Sbjct: 259 SWTSIVACCVQNGRDLEAVDLFREMQS-EGIEPNSVTIPCVLPAFANIAALMHGRSAHCF 317
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
++GF+ DI+V + L+D YAKCG + A +FE ++ +N+VSW +I G+AMHG
Sbjct: 318 SLRKGFH-HDIYVGSALVDMYAKCGRVRDARMIFE--AMPYRNVVSWNAMIGGYAMHGEA 374
Query: 222 KEAVENFERMQKVGLKPN-------------RSWRIGEEGLKFFDKMVEECEVLPDIKHY 268
+ AV F MQ KP+ W EEG +F++M + + P ++HY
Sbjct: 375 ENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWT--EEGRSYFNEMQHKHGISPRMEHY 432
Query: 269 GCLIDILERAGRLEQAEEVASGIP 292
C++ +L RAG+L+ A ++ + +P
Sbjct: 433 SCMVTLLGRAGKLDDAYDIINQMP 456
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 128/342 (37%), Gaps = 79/342 (23%)
Query: 54 GFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG-------------- 99
G +V ++L Y+ G D+ + D +P R +V W+ +I
Sbjct: 50 GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLL 109
Query: 100 -----------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148
++ W G++ G +R R+ +A+ RM E P + L A+
Sbjct: 110 ERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHG-EGFLPDATGVSCALSAVGD 168
Query: 149 NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS--------- 199
G+V + +HGY K G D V+ LID Y KCG ++F+++S
Sbjct: 169 VGDVAVGEQLHGYVVKAGCR-LDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNA 227
Query: 200 ---------------------VDRK---NLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
V R N+VSWT+I++ +G EAV+ F MQ G
Sbjct: 228 LVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEG 287
Query: 236 LKPNRSWRIG------EEGLKFFDKMVEECEVL-----PDIKHYGCLIDILERAGRLEQA 284
++PN S I C L DI L+D+ + GR+ A
Sbjct: 288 IEPN-SVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDA 346
Query: 285 EEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLF 326
+ +P + NVV W +I Y N+ RLF
Sbjct: 347 RMIFEAMPYR--NVVSWNA-----MIGGYAMHGEAENAVRLF 381
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 91/204 (44%), Gaps = 22/204 (10%)
Query: 34 CVTLSYPNLGTQLHA----VFS-KVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPER 88
CV ++ N+ +H FS + GF +YV +AL DMY G ++D+ +F+ +P R
Sbjct: 297 CVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYR 356
Query: 89 NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148
N+V+WN +I GY+ + A+ LFR M + + +P +T VL A +
Sbjct: 357 NVVSWNA----------MIGGYAMHGEAENAVRLFRSMQSSK-EKPDLVTFTCVLGACSQ 405
Query: 149 NGEVRNCQ-LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
G + + K G + H S C++ + G + A + + +
Sbjct: 406 AGWTEEGRSYFNEMQHKHGISPRMEHYS-CMVTLLGRAGKLDDAYDIINQMPFEPDGCI- 463
Query: 208 WTTIISGFAMHG---MGKEAVENF 228
W +++ +HG + + A EN
Sbjct: 464 WGSLLGPCRVHGNVVLAEVAAENL 487
>gi|449532090|ref|XP_004173017.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
mitochondrial-like [Cucumis sativus]
Length = 472
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 141/268 (52%), Gaps = 24/268 (8%)
Query: 28 SFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE 87
S++ + V + LG +LH K+GF +V V + + D Y G + D+ K+FD++
Sbjct: 82 SYMFKASVGIGDAYLGKRLHCWTIKLGFVGYVVVGSTVLDFYAKCGIVGDARKVFDDMIF 141
Query: 88 RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIW 147
++ V+WN +I+ GY R +AL F+RM E +TI +VL A
Sbjct: 142 KDTVSWNSMIS----------GYGRAGVYMDALDCFKRMLL-EGANMDFMTIPSVLNACG 190
Query: 148 KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
G++R + IH K A D+ V N LID Y+KCG + ++ K+F + S R N+V+
Sbjct: 191 GEGDLRKGKEIHCLVLKSPVFAADVAVGNSLIDMYSKCGSLLNSEKVFWNMS--RLNIVT 248
Query: 208 WTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMV 256
WTT+IS + HG G++++ F +M+ G++PN EG + F ++
Sbjct: 249 WTTMISCYGAHGKGEKSLVLFNKMKDCGIQPNSVTLTAILASCSHAGYINEGWRIFQSII 308
Query: 257 EECEVLPDIKHYGCLIDILERAGRLEQA 284
+ +V P ++HY C +D+L R G L++A
Sbjct: 309 SDNKVEPTVEHYACAVDLLSRFGFLKEA 336
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 123/291 (42%), Gaps = 63/291 (21%)
Query: 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP 86
+SF++R+C Q HA GF H+ + T L +Y GFL D+ +FD++
Sbjct: 10 FSFVLRSCAQSYAIAQAKQAHAQILIHGFLPHLTLLTDLLLVYCKCGFLHDARNVFDKMA 69
Query: 87 ERNLVTWNVIITGLV--KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
RN+ +WN++I + GI D Y L +R+
Sbjct: 70 HRNMHSWNILIASYMFKASVGIGDAY-----------LGKRL------------------ 100
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
H + K GF + + V + ++D YAKCG + A K+F+D K+
Sbjct: 101 --------------HCWTIKLGFVGYVV-VGSTVLDFYAKCGIVGDARKVFDDMIF--KD 143
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLK------PNRSWRIGEEGLKFFDKMVEE 258
VSW ++ISG+ G+ +A++ F+RM G P+ G EG K +
Sbjct: 144 TVSWNSMISGYGRAGVYMDALDCFKRMLLEGANMDFMTIPSVLNACGGEGDLRKGKEI-H 202
Query: 259 CEVL------PDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
C VL D+ LID+ + G L +E+V + N+V W T
Sbjct: 203 CLVLKSPVFAADVAVGNSLIDMYSKCGSLLNSEKVFWNMSR--LNIVTWTT 251
>gi|125585403|gb|EAZ26067.1| hypothetical protein OsJ_09920 [Oryza sativa Japonica Group]
Length = 359
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/286 (29%), Positives = 151/286 (52%), Gaps = 28/286 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG--FQSHVYVNTALGDMYVSLGFLKDSSK 80
++ T + ++ C L LG +H ++ + G ++ V+ A+ D+Y G L + +
Sbjct: 6 NALTLASVLPACARLGDLALGRAIHGLWLRRGGGHGANPIVDNAVLDVYAKCGALASARR 65
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
LFDE+PER++ W ++ GL +R +A+A+FR M + P++ T++
Sbjct: 66 LFDEMPERDVFAWTTMVWGL----------ARNGSPQDAVAMFRGMLSDGDAAPNDATVV 115
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+ L A+ +G + +C+L+H Y K+G ++ V N LID YAKCG + A K+F +
Sbjct: 116 SALHAVATSGSLVSCKLLHSYAVKQGLGG-ELVVGNALIDAYAKCGDAWLAFKVF--VEL 172
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN------------RSWRIGEEG 248
++VSW TI A+HG +EA++ F M + G++P+ + R+ ++
Sbjct: 173 PETDMVSWGTITRAMAVHGRCREALQLFSLMLRRGVRPDGAVFLALLTACCHAGRV-DQA 231
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
L F M + P +HY C++D RAG+L++A E+ +P++
Sbjct: 232 LLFLGAMARVYGISPRREHYTCVLDACGRAGQLDRAGEIFRQMPAE 277
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 64/108 (59%), Gaps = 4/108 (3%)
Query: 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKR-GFNAFDIHVSNCLIDTYAKCGCIFSAS 192
P+ +T+ +VLPA + G++ + IHG +R G + + V N ++D YAKCG + SA
Sbjct: 5 PNALTLASVLPACARLGDLALGRAIHGLWLRRGGGHGANPIVDNAVLDVYAKCGALASAR 64
Query: 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-LKPN 239
+LF++ + +++ +WTT++ G A +G ++AV F M G PN
Sbjct: 65 RLFDE--MPERDVFAWTTMVWGLARNGSPQDAVAMFRGMLSDGDAAPN 110
>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g01580-like [Glycine max]
Length = 700
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 154/276 (55%), Gaps = 26/276 (9%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
+R C + S G +H + GF+ + V+TAL DMY+ K++ LF+ +P++++
Sbjct: 315 LRACASSSNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMPKKDV 374
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
V+W V+ +G Y+ + ++++L +F M + T P I ++ +L A + G
Sbjct: 375 VSWAVLFSG----------YAEIGMAHKSLGVFCNMLSYG-TRPDAIALVKILAASSELG 423
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
V+ +H + K GF+ + + LI+ YAKC I +A+K+F+ + RK++V+W++
Sbjct: 424 IVQQALCLHAFVSKSGFDNNEF-IGASLIELYAKCSSIDNANKVFK--GMRRKDVVTWSS 480
Query: 211 IISGFAMHGMGKEAVENFERMQK-VGLKPNRSWRIG-----------EEGLKFFDKMVEE 258
II+ + HG G+EA++ F +M +KPN + EEG+K F MV E
Sbjct: 481 IIAAYGFHGQGEEALKLFYQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNE 540
Query: 259 CEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
+++P+ +HYG ++D+L R G L++A ++ + +P Q
Sbjct: 541 YQLMPNTEHYGIMVDLLGRMGELDKALDMINEMPMQ 576
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 114/218 (52%), Gaps = 13/218 (5%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D++T S +++C L LG +H K + ++V +AL ++Y G + D+ K+F
Sbjct: 104 DNYTVSIALKSCSGLQKLELGKMIHGFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVF 163
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E P++++V W IIT GY + ALA F RM E P +T+++
Sbjct: 164 TEYPKQDVVLWTSIIT----------GYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSA 213
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
A + + + +HG+ ++RGF+ + ++N +++ Y K G I SA+ LF + +
Sbjct: 214 ASACAQLSDFNLGRSVHGFVKRRGFDT-KLCLANSILNLYGKTGSIRSAANLFRE--MPY 270
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
K+++SW+++++ +A +G A+ F M ++ NR
Sbjct: 271 KDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNR 308
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 103/208 (49%), Gaps = 26/208 (12%)
Query: 30 LIRTCVT-LSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPER 88
L+ TC + +S P QLH+ KVG +V T L +Y L + KLF+E P +
Sbjct: 10 LLETCCSKISIP----QLHSQCLKVGLAHDSFVVTKLNVLYARYASLCHAHKLFEETPCK 65
Query: 89 NLVTWNVIITGLV---KWTGIIDGYSRMNRSNEALALFRRMAACEYTE--PSEITILAVL 143
+ WN ++ KW E L+LF +M A TE P T+ L
Sbjct: 66 TVYLWNALLRSYFLEGKWV-------------ETLSLFHQMNADAITEERPDNYTVSIAL 112
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
+ ++ ++IHG+ +K+ + D+ V + LI+ Y+KCG + A K+F T ++
Sbjct: 113 KSCSGLQKLELGKMIHGFLKKKKIDN-DMFVGSALIELYSKCGQMNDAVKVF--TEYPKQ 169
Query: 204 NLVSWTTIISGFAMHGMGKEAVENFERM 231
++V WT+II+G+ +G + A+ F RM
Sbjct: 170 DVVLWTSIITGYEQNGSPELALAFFSRM 197
>gi|297604972|ref|NP_001056430.2| Os05g0581300 [Oryza sativa Japonica Group]
gi|255676606|dbj|BAF18344.2| Os05g0581300 [Oryza sativa Japonica Group]
Length = 704
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 151/300 (50%), Gaps = 31/300 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV-SLGFLKDSSKL 81
+ +TY+ +I C +++ LG QLHA ++ GF V +L +Y + G L + +
Sbjct: 278 NEYTYAAVIAACADIAWVCLGEQLHAQAARKGFACARSVANSLVTLYTRAAGCLSAADAV 337
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM---AACEYTEPSEIT 138
F E ++ +V W+ II GY++ + +A ALFR M + C P+E T
Sbjct: 338 FRE----------SVVKDVVSWSAIISGYAQEGLAEDAFALFREMRHHSGC--PRPNEFT 385
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+ ++L + + +H G + + + LID Y K G + A +F
Sbjct: 386 LASLLSVCATAASLDAGRQLHTLAVAAGLEHHAM-IRSALIDMYGKSGSMLDADIVFSHR 444
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EE 247
D ++VSWT +I G+A HG K+A+E F+ M VGLKP+ IG E
Sbjct: 445 VKD--DVVSWTAMIVGYAEHGHSKKALELFQEMCHVGLKPDHVTFIGVLNACCHAGEVEL 502
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLR 307
GL++ ++M + + P +HYGC++D+L RAGR+ +AEE+ I + + VVW T LR
Sbjct: 503 GLRYLNEMNQIYGLYPAKEHYGCVVDLLGRAGRINEAEELIGKIAANERDGVVW-TSLLR 561
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 106/237 (44%), Gaps = 30/237 (12%)
Query: 14 SHSPLPPLFDSFTYSFLIRTCVTLSYPNL---GTQLHAVFSKVGFQSHVYVNTALGDMYV 70
S PL P D F S + ++C + LHA + S V+V TAL D+Y
Sbjct: 61 SSPPLAPA-DPFVLSLVFKSCAAAADARFLPHAASLHAFAVRSSAVSSVFVATALADVYA 119
Query: 71 SLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA-- 128
G L + K+FDE+P +N+V+W ++ L +R R +EAL F M A
Sbjct: 120 KAGCLGLALKVFDEMPHKNVVSWTTLVASL----------TRAGRRHEALRRFSEMRASG 169
Query: 129 --CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG 186
C+ + + G + +H + K G ++ +V+N L YA+C
Sbjct: 170 VHCDSYAYAAALTACADAGLLSRG-----REVHAFCAKLGLDSTP-YVANTLATLYARCS 223
Query: 187 CIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK----VGLKPN 239
+ A L + + +++ +WTT+IS + G KEA+E F RM + V PN
Sbjct: 224 DVDRA--LAAVSRMGTRDVAAWTTVISAYVQTGRAKEAIEAFVRMLREESSVAASPN 278
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 107/232 (46%), Gaps = 24/232 (10%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
F ++++++ HS P P + FT + L+ C T + + G QLH + G + H
Sbjct: 366 FALFREMRH---HSGCPRP---NEFTLASLLSVCATAASLDAGRQLHTLAVAAGLEHHAM 419
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
+ +AL DMY G + D+ +F + ++V+W T +I GY+ S +AL
Sbjct: 420 IRSALIDMYGKSGSMLDADIVFSHRVKDDVVSW----------TAMIVGYAEHGHSKKAL 469
Query: 121 ALFRRMAACEYT-EPSEITILAVLPAIWKNGEVR-NCQLIHGYGEKRGFNAFDIHVSNCL 178
LF+ M C +P +T + VL A GEV + ++ + G H C+
Sbjct: 470 ELFQEM--CHVGLKPDHVTFIGVLNACCHAGEVELGLRYLNEMNQIYGLYPAKEHY-GCV 526
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG---MGKEAVEN 227
+D + G I A +L + + ++ V WT+++ A G GK+A E
Sbjct: 527 VDLLGRAGRINEAEELIGKIAANERDGVVWTSLLRACAARGEEETGKKAAER 578
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 80/167 (47%), Gaps = 18/167 (10%)
Query: 75 LKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM-AACEYTE 133
L D+ +LFD +P R+ V + ++ G G G A+ALF R+ A+
Sbjct: 17 LADAHRLFDGMPRRDEVAYATLLAGHAA-AGDFPG---------AMALFSRLRASSPPLA 66
Query: 134 PSEITILA-VLPAIWKNGEVR---NCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
P++ +L+ V + + R + +H + R + V+ L D YAK GC+
Sbjct: 67 PADPFVLSLVFKSCAAAADARFLPHAASLHAFA-VRSSAVSSVFVATALADVYAKAGCLG 125
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
A K+F++ + KN+VSWTT+++ G EA+ F M+ G+
Sbjct: 126 LALKVFDE--MPHKNVVSWTTLVASLTRAGRRHEALRRFSEMRASGV 170
>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 624
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 156/313 (49%), Gaps = 35/313 (11%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L + +T+ F+ + C G Q+ K+G +S+++V A+ MY + G + ++ +
Sbjct: 114 LPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARR 173
Query: 81 LFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEA 119
+FD +++L +WN++I G +V WT II GY ++ EA
Sbjct: 174 VFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEA 233
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
L LF M P+E T+ + L A + + IH Y +K + +++ L+
Sbjct: 234 LDLFHEMLQTG-PPPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLAS-LL 291
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D YAKCG I A+K+F D + + W +I G+AMHG KEA++ FE+M+ + PN
Sbjct: 292 DMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKVSPN 351
Query: 240 R-----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
+ ++ EEG +F M + P+I+HYGC++D+L R+G L++AEE
Sbjct: 352 KVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETV 411
Query: 289 SGIPSQITNVVVW 301
+P + +W
Sbjct: 412 FNMP-MAPDATIW 423
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 104/253 (41%), Gaps = 46/253 (18%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV--SLGFLKD 77
PL + F + +C ++ N Q HA G H L + + S G L
Sbjct: 11 PLNSNQLQLFSLESCKSM---NQIKQTHAHLITTGLILHPITANKLLKVLIASSFGSLSY 67
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
+ +LFD++P+ ++ +N +I K +I S+ ++ +F M P+
Sbjct: 68 AHQLFDQIPKPDVFIYNTMI----KAHAVIP-----TSSHNSMRIFLSMVRVSGFLPNRY 118
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
T + V A V + I + K G + ++ V+N +I YA G + A ++F D
Sbjct: 119 TFVFVFKACGNGLGVLEGEQIRVHAIKIGLES-NLFVTNAMIRMYANWGLVDEARRVF-D 176
Query: 198 TSVDR------------------------------KNLVSWTTIISGFAMHGMGKEAVEN 227
S+D+ +++VSWTTII+G+ G KEA++
Sbjct: 177 WSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDL 236
Query: 228 FERMQKVGLKPNR 240
F M + G PN
Sbjct: 237 FHEMLQTGPPPNE 249
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/281 (20%), Positives = 113/281 (40%), Gaps = 54/281 (19%)
Query: 19 PPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
PP + FT + + C L + G +H K + + + +L DMY G + +
Sbjct: 246 PP--NEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFA 303
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
+K+F + L W W +I GY+ +S EA+ LF +M E P+++T
Sbjct: 304 AKVFHDEYGLKLKVW--------PWNAMIGGYAMHGKSKEAIDLFEQMKV-EKVSPNKVT 354
Query: 139 ILAVLPA-----IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASK 193
+A+L A + + G + YG + +I C++D + G + A +
Sbjct: 355 FVALLNACSHGKLVEEGRGYFKSMASSYGIEP-----EIEHYGCMVDLLGRSGLLKEAEE 409
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFD 253
+ + + W ++ +H ++ ER Q++G
Sbjct: 410 TVFNMPMAPDATI-WGALLGACRIH-------KDIERGQRIG------------------ 443
Query: 254 KMVEECEVLPDIKHYGC---LIDILERAGRLEQAEEVASGI 291
K+++E D H GC L ++ +G+ ++A+ V I
Sbjct: 444 KIIKEL----DSDHIGCHVLLANLYSASGQWDEAKAVRQKI 480
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,567,892,673
Number of Sequences: 23463169
Number of extensions: 231126244
Number of successful extensions: 723661
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 5530
Number of HSP's successfully gapped in prelim test: 3354
Number of HSP's that attempted gapping in prelim test: 627586
Number of HSP's gapped (non-prelim): 35217
length of query: 352
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 209
effective length of database: 9,003,962,200
effective search space: 1881828099800
effective search space used: 1881828099800
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 77 (34.3 bits)