BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042593
(352 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q680Z7|PPR24_ARATH Pentatricopeptide repeat-containing protein At1g09220,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E25 PE=2
SV=1
Length = 504
Score = 312 bits (800), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 164/338 (48%), Positives = 217/338 (64%), Gaps = 37/338 (10%)
Query: 1 FLVYKQLQQI-YIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFS--KVGFQS 57
+ +Y QLQ++ ++ H+ P FDSFTY FL++ +P+L + K+GF+S
Sbjct: 97 YFLYDQLQRLHFLSDHNKSLPPFDSFTYLFLLKASSNPRFPSLLLGIGLHGLTLKLGFES 156
Query: 58 HVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGL----------------- 100
HVYV TAL MY+ G + D+ K+FDE+PERN VTWNV+ITGL
Sbjct: 157 HVYVQTALVGMYLVGGNMIDAHKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMP 216
Query: 101 ----VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQ 156
V WT IIDGY+R+++ EA+ LF RM AC+ +P+EITILA+LPA+W G+++ C
Sbjct: 217 NRTVVSWTTIIDGYARVDKPKEAILLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCG 276
Query: 157 LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFA 216
+H Y KRGF DI V+N LID YAKCGCI SA K F + RKNLVSWTT+IS FA
Sbjct: 277 SVHAYVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFA 336
Query: 217 MHGMGKEAVENFERMQKVGLKPNRSWRIG------------EEGLKFFDKMVEECEVLPD 264
+HGMGKEAV F+ M+++GLKPNR I EE L+FF+ MV E ++ PD
Sbjct: 337 IHGMGKEAVSMFKDMERLGLKPNRVTMISVLNACSHGGLAEEEFLEFFNTMVNEYKITPD 396
Query: 265 IKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
+KHYGCL+D+L R GRLE+AE++A IP + VVWR
Sbjct: 397 VKHYGCLVDMLRRKGRLEEAEKIALEIPIE-EKAVVWR 433
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 16/115 (13%)
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNR---------SWRIGEEGLKFF 252
+ +VSWTTII G+A KEA+ F RM +KPN W +G+ LK
Sbjct: 218 RTVVSWTTIIDGYARVDKPKEAILLFSRMVACDAIKPNEITILAILPAVWNLGD--LKMC 275
Query: 253 DKM---VEECEVLP-DIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ V + +P DI+ LID + G ++ A + IP+ N+V W T
Sbjct: 276 GSVHAYVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTT 330
>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540
OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1
Length = 534
Score = 205 bits (522), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 117/322 (36%), Positives = 179/322 (55%), Gaps = 43/322 (13%)
Query: 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVN 62
+YKQL + LP D FT+ F+ ++C +L LG Q+H K G + HV
Sbjct: 95 IYKQL----LRKSFELP---DRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHVVTE 147
Query: 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG---------------------LV 101
AL DMY+ L D+ K+FDE+ ER++++WN +++G +V
Sbjct: 148 NALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDKTIV 207
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
WT +I GY+ + EA+ FR M EP EI++++VLP+ + G + + IH Y
Sbjct: 208 SWTAMISGYTGIGCYVEAMDFFREMQLAG-IEPDEISLISVLPSCAQLGSLELGKWIHLY 266
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
E+RGF V N LI+ Y+KCG I A +LF ++ K+++SW+T+ISG+A HG
Sbjct: 267 AERRGFLK-QTGVCNALIEMYSKCGVISQAIQLF--GQMEGKDVISWSTMISGYAYHGNA 323
Query: 222 KEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGC 270
A+E F MQ+ +KPN +G +EGL++FD M ++ ++ P I+HYGC
Sbjct: 324 HGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGC 383
Query: 271 LIDILERAGRLEQAEEVASGIP 292
LID+L RAG+LE+A E+ +P
Sbjct: 384 LIDVLARAGKLERAVEITKTMP 405
>sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310
OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1
Length = 530
Score = 192 bits (487), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 113/313 (36%), Positives = 170/313 (54%), Gaps = 39/313 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FT+ F+++ V +S G Q+H GF S V+V T L MY S G L D+ K+F
Sbjct: 115 DTFTFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMF 174
Query: 83 DELPERNLVTWNVIITGL-----------------------VKWTGIIDGYSRMNRSNEA 119
DE+ +++ WN ++ G V WT +I GY++ R++EA
Sbjct: 175 DEMLVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEA 234
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
+ +F+RM E EP E+T+LAVL A G + + I Y + RG N + ++N +I
Sbjct: 235 IEVFQRMLM-ENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNR-AVSLNNAVI 292
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D YAK G I A +FE V+ +N+V+WTTII+G A HG G EA+ F RM K G++PN
Sbjct: 293 DMYAKSGNITKALDVFE--CVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPN 350
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
I + G + F+ M + + P+I+HYGC+ID+L RAG+L +A+EV
Sbjct: 351 DVTFIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVI 410
Query: 289 SGIPSQITNVVVW 301
+P + N +W
Sbjct: 411 KSMPFK-ANAAIW 422
>sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065
OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2
Length = 595
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 172/293 (58%), Gaps = 27/293 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ TY FLI+ T++ LG +H+V + GF S +YV +L +Y + G + + K+F
Sbjct: 120 DTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVF 179
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++PE++LV WN +I+G++ + EALAL+ M + + +P TI+++
Sbjct: 180 DKMPEKDLVAWN----------SVINGFAENGKPEEALALYTEMNS-KGIKPDGFTIVSL 228
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A K G + + +H Y K G ++H SN L+D YA+CG + A LF D VD
Sbjct: 229 LSACAKIGALTLGKRVHVYMIKVGLTR-NLHSSNVLLDLYARCGRVEEAKTLF-DEMVD- 285
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNRSWRIG-----------EEGLK 250
KN VSWT++I G A++G GKEA+E F+ M+ GL P +G +EG +
Sbjct: 286 KNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFE 345
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+F +M EE ++ P I+H+GC++D+L RAG++++A E +P Q NVV+WRT
Sbjct: 346 YFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQ-PNVVIWRT 397
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 106/230 (46%), Gaps = 35/230 (15%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT L+ C + LG ++H KVG +++ + L D+Y G ++++ LF
Sbjct: 221 DGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLF 280
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+ ++N V+W +I GL ++G+ + EA+ LF+ M + E P EIT + +
Sbjct: 281 DEMVDKNSVSWTSLIVGLA-----VNGFGK-----EAIELFKYMESTEGLLPCEITFVGI 330
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFD-----------IHVSNCLIDTYAKCGCIFSA 191
L A G V K GF F I C++D A+ G + A
Sbjct: 331 LYACSHCGMV-----------KEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKA 379
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241
+ + + + N+V W T++ +HG A F R+Q + L+PN S
Sbjct: 380 YEYIKSMPM-QPNVVIWRTLLGACTVHGDSDLA--EFARIQILQLEPNHS 426
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 111/228 (48%), Gaps = 15/228 (6%)
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
W +I GY+ + S A +L+R M EP T ++ A+ +VR + IH
Sbjct: 88 WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETIHSVV 147
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
+ GF + I+V N L+ YA CG + SA K+F+ + K+LV+W ++I+GFA +G +
Sbjct: 148 IRSGFGSL-IYVQNSLLHLYANCGDVASAYKVFD--KMPEKDLVAWNSVINGFAENGKPE 204
Query: 223 EAVENFERMQKVGLKPN---------RSWRIGEEGL-KFFDKMVEECEVLPDIKHYGCLI 272
EA+ + M G+KP+ +IG L K + + + ++ L+
Sbjct: 205 EALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLL 264
Query: 273 DILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITL 320
D+ R GR+E+A+ + + + N V W + + L +N + I L
Sbjct: 265 DLYARCGRVEEAKTLFDEMVDK--NSVSWTSLIVGLAVNGFGKEAIEL 310
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 168 bits (426), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 102/311 (32%), Positives = 162/311 (52%), Gaps = 37/311 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+++T+ L++ C LS TQ+HA +K+G+++ VY +L + Y G K + LF
Sbjct: 114 NAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLF 173
Query: 83 DELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALA 121
D +PE + V+WN +I G VK WT +I GY + + + EAL
Sbjct: 174 DRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQ 233
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M + EP +++ L A + G + + IH Y K D + LID
Sbjct: 234 LFHEMQNSD-VEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIR-MDSVLGCVLIDM 291
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-- 239
YAKCG + A ++F++ + +K++ +WT +ISG+A HG G+EA+ F MQK+G+KPN
Sbjct: 292 YAKCGEMEEALEVFKN--IKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVI 349
Query: 240 ---------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290
+ EEG F M + + P I+HYGC++D+L RAG L++A+
Sbjct: 350 TFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQE 409
Query: 291 IPSQITNVVVW 301
+P + N V+W
Sbjct: 410 MPLK-PNAVIW 419
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 76/301 (25%), Positives = 119/301 (39%), Gaps = 60/301 (19%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSL---GFLKDSSKLFDELPERNLVTWNVIITGLV 101
Q+HA K G Y T +S FL + +FD + WN++I G
Sbjct: 32 QIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRG-- 89
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
+S + +L L++RM C + T ++L A IH
Sbjct: 90 --------FSCSDEPERSLLLYQRM-LCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQ 140
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF------EDTS---------------- 199
K G+ D++ N LI++YA G A LF +D S
Sbjct: 141 ITKLGYEN-DVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDI 199
Query: 200 -------VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR---------SWR 243
+ KN +SWTT+ISG+ M KEA++ F MQ ++P+ +
Sbjct: 200 ALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQ 259
Query: 244 IG--EEGLKFFDKMVEECEVLPDIKHYGC-LIDILERAGRLEQAEEVASGIPSQITNVVV 300
+G E+G K+ + + + D GC LID+ + G +E+A EV I + +V
Sbjct: 260 LGALEQG-KWIHSYLNKTRIRMD-SVLGCVLIDMYAKCGEMEEALEVFKNIKKK--SVQA 315
Query: 301 W 301
W
Sbjct: 316 W 316
>sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980
OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2
Length = 603
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 159/293 (54%), Gaps = 26/293 (8%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D++T+ L++ C G QLH + K+G +VYV L +MY + +
Sbjct: 126 LPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARC 185
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD + E +V +N +ITG Y+R NR NEAL+LFR M +Y +P+EIT+L
Sbjct: 186 VFDRIVEPCVVCYNAMITG----------YARRNRPNEALSLFREMQG-KYLKPNEITLL 234
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+VL + G + + IH Y +K F + + V+ LID +AKCG + A +FE +
Sbjct: 235 SVLSSCALLGSLDLGKWIHKYAKKHSFCKY-VKVNTALIDMFAKCGSLDDAVSIFE--KM 291
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
K+ +W+ +I +A HG ++++ FERM+ ++P+ +G EEG
Sbjct: 292 RYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGR 351
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWR 302
K+F +MV + ++P IKHYG ++D+L RAG LE A E +P T ++WR
Sbjct: 352 KYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTP-MLWR 403
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 164 bits (415), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 109/336 (32%), Positives = 173/336 (51%), Gaps = 49/336 (14%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
FL+Y QL S + P + FT+S L+++C T S G +H K G Y
Sbjct: 115 FLLYVQLLS------SEINP--NEFTFSSLLKSCSTKS----GKLIHTHVLKFGLGIDPY 162
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIIT---------------------G 99
V T L D+Y G + + K+FD +PER+LV+ +IT
Sbjct: 163 VATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERD 222
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
+V W +IDGY++ N+AL LF+++ A +P EIT++A L A + G + + IH
Sbjct: 223 IVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIH 282
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
+ + ++ V LID Y+KCG + A +F DT RK++V+W +I+G+AMHG
Sbjct: 283 VFVKSSRIR-LNVKVCTGLIDMYSKCGSLEEAVLVFNDTP--RKDIVAWNAMIAGYAMHG 339
Query: 220 MGKEAVENFERMQKV-GLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKH 267
++A+ F MQ + GL+P IG EG++ F+ M +E + P I+H
Sbjct: 340 YSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEH 399
Query: 268 YGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
YGCL+ +L RAG+L++A E + + + V+W +
Sbjct: 400 YGCLVSLLGRAGQLKRAYETIKNM-NMDADSVLWSS 434
>sp|Q9FX24|PPR71_ARATH Pentatricopeptide repeat-containing protein At1g34160
OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2
Length = 581
Score = 163 bits (413), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 105/311 (33%), Positives = 170/311 (54%), Gaps = 38/311 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+ T SF ++ C + QLH ++ G + + T L D Y G L + KLF
Sbjct: 108 DALTCSFTLKACARALCSSAMDQLHCQINRRGLSADSLLCTTLLDAYSKNGDLISAYKLF 167
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+P R++ +WN +I GLV NR++EA+ L++RM E SE+T++A
Sbjct: 168 DEMPVRDVASWNALIAGLVSG----------NRASEAMELYKRMET-EGIRRSEVTVVAA 216
Query: 143 LPAIWKNGEVRNCQLI-HGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
L A G+V+ + I HGY ++ VSN ID Y+KCG + A ++FE +
Sbjct: 217 LGACSHLGDVKEGENIFHGYSND------NVIVSNAAIDMYSKCGFVDKAYQVFEQFT-G 269
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLK 250
+K++V+W T+I+GFA+HG A+E F++++ G+KP+ R + E GL
Sbjct: 270 KKSVVTWNTMITGFAVHGEAHRALEIFDKLEDNGIKPDDVSYLAALTACRHAGLVEYGLS 329
Query: 251 FFDKMVEECE-VLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLL 309
F+ M C+ V ++KHYGC++D+L RAGRL +A ++ + S I + V+W++ LL
Sbjct: 330 VFNNMA--CKGVERNMKHYGCVVDLLSRAGRLREAHDIICSM-SMIPDPVLWQS----LL 382
Query: 310 INSYFFSPITL 320
S +S + +
Sbjct: 383 GASEIYSDVEM 393
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 163 bits (413), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 151/281 (53%), Gaps = 24/281 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +T + ++ C + G ++H + ++V+ AL DMY G ++++ +F
Sbjct: 396 DVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVF 455
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E+ +++++WN II G YS+ +NEAL+LF + + P E T+ V
Sbjct: 456 SEMRVKDIISWNTIIGG----------YSKNCYANEALSLFNLLLEEKRFSPDERTVACV 505
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
LPA + IHGY + G+ + D HV+N L+D YAKCG + A LF+D +
Sbjct: 506 LPACASLSAFDKGREIHGYIMRNGYFS-DRHVANSLVDMYAKCGALLLAHMLFDD--IAS 562
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
K+LVSWT +I+G+ MHG GKEA+ F +M++ G++ + + +EG +F
Sbjct: 563 KDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRF 622
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
F+ M EC++ P ++HY C++D+L R G L +A +P
Sbjct: 623 FNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMP 663
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 151/293 (51%), Gaps = 28/293 (9%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
DS+T+S + ++ +L + G QLH K GF V +L Y+ + + K+
Sbjct: 193 MDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKV 252
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FDE+ ER++++WN II+GY + + L++F +M E TI++
Sbjct: 253 FDEMTERDVISWN----------SIINGYVSNGLAEKGLSVFVQMLV-SGIEIDLATIVS 301
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
V + + + +H G K F+ D N L+D Y+KCG + SA +F + S D
Sbjct: 302 VFAGCADSRLISLGRAVHSIGVKACFSRED-RFCNTLLDMYSKCGDLDSAKAVFREMS-D 359
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLK 250
R ++VS+T++I+G+A G+ EAV+ FE M++ G+ P+ +R+ +EG K
Sbjct: 360 R-SVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEG-K 417
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ ++E ++ DI L+D+ + G +++AE V S + ++ +++ W T
Sbjct: 418 RVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEM--RVKDIISWNT 468
Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 101/216 (46%), Gaps = 14/216 (6%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D T +++ C G ++ GF + + L MY + G LK++S++
Sbjct: 92 IDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRV 151
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FDE+ + WN+++ L K +G G ++ LF++M + E T
Sbjct: 152 FDEVKIEKALFWNILMNELAK-SGDFSG---------SIGLFKKMMS-SGVEMDSYTFSC 200
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
V + V + +HG+ K GF + V N L+ Y K + SA K+F++ +
Sbjct: 201 VSKSFSSLRSVHGGEQLHGFILKSGFGERN-SVGNSLVAFYLKNQRVDSARKVFDEMT-- 257
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
++++SW +II+G+ +G+ ++ + F +M G++
Sbjct: 258 ERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIE 293
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 36/208 (17%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T + ++ C +LS + G ++H + G+ S +V +L DMY G L + LF
Sbjct: 498 DERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLF 557
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++ ++LV+W V+I GY EA+ALF +M E EI+ +++
Sbjct: 558 DDIASKDLVSWTVMIA----------GYGMHGFGKEAIALFNQMRQAG-IEADEISFVSL 606
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDI------------HVSNCLIDTYAKCGCIFS 190
L A +G V G+ F+I H + C++D A+ G +
Sbjct: 607 LYACSHSGLV-----------DEGWRFFNIMRHECKIEPTVEHYA-CIVDMLARTGDLIK 654
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMH 218
A + E+ + + W ++ G +H
Sbjct: 655 AYRFIENMPIPPDATI-WGALLCGCRIH 681
>sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510
OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1
Length = 511
Score = 162 bits (410), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 109/348 (31%), Positives = 175/348 (50%), Gaps = 50/348 (14%)
Query: 1 FLVYKQLQQIYIHSHSPLPPL-------FDSF-----TYSFLIRTCVTLSYPNLGTQLHA 48
FL K +Q Y+H H P + FD T++F+ + S LH+
Sbjct: 48 FLYNKLIQAYYVH-HQPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHS 106
Query: 49 VFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG--------- 99
F + GF+S + T L Y LG L + ++FDE+ +R++ WN +ITG
Sbjct: 107 QFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKA 166
Query: 100 ------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIW 147
+ WT +I G+S+ +EAL +F M + +P+ IT+++VLPA
Sbjct: 167 AMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACA 226
Query: 148 KNGEVRNCQLIHGYGEKRGFNAFD-IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLV 206
GE+ + + GY + GF FD I+V N I+ Y+KCG I A +LFE+ +++NL
Sbjct: 227 NLGELEIGRRLEGYARENGF--FDNIYVCNATIEMYSKCGMIDVAKRLFEELG-NQRNLC 283
Query: 207 SWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKM 255
SW ++I A HG EA+ F +M + G KP+ +G +G + F M
Sbjct: 284 SWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSM 343
Query: 256 VEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
E ++ P ++HYGC+ID+L R G+L++A ++ +P + + VVW T
Sbjct: 344 EEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMK-PDAVVWGT 390
>sp|Q9FXA9|PPR83_ARATH Putative pentatricopeptide repeat-containing protein At1g56570
OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1
Length = 611
Score = 161 bits (407), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 166/300 (55%), Gaps = 32/300 (10%)
Query: 5 KQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTA 64
K +Q+ + + P + + +R ++ G Q+HA K GFQS++ V +
Sbjct: 199 KMYKQMLLENAEVTP-----YCITIAVRASASIDSVTTGKQIHASVIKRGFQSNLPVMNS 253
Query: 65 LGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFR 124
+ D+Y G+L ++ F E+ +++L+TWN +I+ L + + S+EAL +F+
Sbjct: 254 ILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISELER-----------SDSSEALLMFQ 302
Query: 125 RMAACEYTEPSEITILAVLPAIWKNGEVRNC-QLIHGYGEKRGFNAFDIHVSNCLIDTYA 183
R + + P+ T +++ A N NC Q +HG +RGFN ++ ++N LID YA
Sbjct: 303 RFESQGFV-PNCYTFTSLVAAC-ANIAALNCGQQLHGRIFRRGFNK-NVELANALIDMYA 359
Query: 184 KCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN---- 239
KCG I + ++F + VDR+NLVSWT+++ G+ HG G EAVE F++M G++P+
Sbjct: 360 KCGNIPDSQRVFGEI-VDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVF 418
Query: 240 -------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
R + E+GLK+F+ M E + PD Y C++D+L RAG++ +A E+ +P
Sbjct: 419 MAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMP 478
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 111/221 (50%), Gaps = 22/221 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL- 81
+ FT S ++++C + G +H V K+G + +YV+ A+ +MY + +++ L
Sbjct: 110 NEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLI 169
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F ++ +N VTW +ITG +T + DG L ++++M E +E+T
Sbjct: 170 FRDIKVKNDVTWTTLITG---FTHLGDGIG-------GLKMYKQM----LLENAEVTPYC 215
Query: 142 VLPAIWKNGEVRNC---QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+ A+ + + + + IH KRGF + ++ V N ++D Y +CG + A F +
Sbjct: 216 ITIAVRASASIDSVTTGKQIHASVIKRGFQS-NLPVMNSILDLYCRCGYLSEAKHYFHE- 273
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
++ K+L++W T+IS EA+ F+R + G PN
Sbjct: 274 -MEDKDLITWNTLISELERSD-SSEALLMFQRFESQGFVPN 312
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 26/216 (12%)
Query: 17 PLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76
P+P S + + + YP + H + + T L Y G ++
Sbjct: 14 PIPNFVRSSLRNAGVESSQNTEYPPYKPKKHHILA-----------TNLIVSYFEKGLVE 62
Query: 77 DSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE 136
++ LFDE+P+R++V W +IT GY+ N + A F M + T P+E
Sbjct: 63 EARSLFDEMPDRDVVAWTAMIT----------GYASSNYNARAWECFHEMVK-QGTSPNE 111
Query: 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL-F 195
T+ +VL + + L+HG K G ++V N +++ YA C A+ L F
Sbjct: 112 FTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEG-SLYVDNAMMNMYATCSVTMEAACLIF 170
Query: 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231
D V KN V+WTT+I+GF G G ++ +++M
Sbjct: 171 RDIKV--KNDVTWTTLITGFTHLGDGIGGLKMYKQM 204
Score = 38.5 bits (88), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
LI +Y + G + A LF++ + +++V+WT +I+G+A A E F M K G
Sbjct: 51 LIVSYFEKGLVEEARSLFDE--MPDRDVVAWTAMITGYASSNYNARAWECFHEMVKQGTS 108
Query: 238 PN 239
PN
Sbjct: 109 PN 110
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 159 bits (401), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 169/327 (51%), Gaps = 51/327 (15%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT+ +++ C G Q+H + K GF +V + L MYV GF+KD+ LF
Sbjct: 127 NRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLF 186
Query: 83 -DELPERNLVT-------------WNVIITG---------------------LVKWTGII 107
+ E+++V WNV+I G +V W +I
Sbjct: 187 YKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMI 246
Query: 108 DGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF 167
GYS +A+ +FR M + P+ +T+++VLPAI + G + + +H Y E G
Sbjct: 247 SGYSLNGFFKDAVEVFREMKKGD-IRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGI 305
Query: 168 NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVEN 227
D+ + + LID Y+KCG I A +FE + R+N+++W+ +I+GFA+HG +A++
Sbjct: 306 RIDDV-LGSALIDMYSKCGIIEKAIHVFE--RLPRENVITWSAMINGFAIHGQAGDAIDC 362
Query: 228 FERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILE 276
F +M++ G++P+ I EEG ++F +MV + P I+HYGC++D+L
Sbjct: 363 FCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLG 422
Query: 277 RAGRLEQAEEVASGIPSQITNVVVWRT 303
R+G L++AEE +P + + V+W+
Sbjct: 423 RSGLLDEAEEFILNMPIKPDD-VIWKA 448
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 139/317 (43%), Gaps = 72/317 (22%)
Query: 44 TQLHAVFSKVG------FQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVII 97
+Q+HAVF K G + + A D++ L + K+F+++P+RN +WN II
Sbjct: 40 SQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHR--DLDYAHKIFNQMPQRNCFSWNTII 97
Query: 98 TGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQL 157
G + S +++ A+ LF M + E+ EP+ T +VL A K G+++ +
Sbjct: 98 RGFSE--------SDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQ 149
Query: 158 IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR--------------- 202
IHG K GF + +SN L+ Y CG + A LF +++
Sbjct: 150 IHGLALKYGFGGDEFVMSN-LVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEI 208
Query: 203 ----------------------------KNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
+++VSW T+ISG++++G K+AVE F M+K
Sbjct: 209 VLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKG 268
Query: 235 GLKPNRSW---------RIGEEGL-KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284
++PN R+G L ++ E+ + D LID+ + G +E+A
Sbjct: 269 DIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKA 328
Query: 285 EEVASGIPSQITNVVVW 301
V +P + NV+ W
Sbjct: 329 IHVFERLPRE--NVITW 343
>sp|Q38959|PP257_ARATH Pentatricopeptide repeat-containing protein At3g26630,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-A6 PE=2
SV=1
Length = 455
Score = 159 bits (401), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 93/305 (30%), Positives = 158/305 (51%), Gaps = 37/305 (12%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD FT+ F+I+ C+ S LGTQ+H + K GF + V+ L D+Y G K+
Sbjct: 117 FDKFTFPFVIKACLASSSIRLGTQVHGLAIKAGFFNDVFFQNTLMDLYFKCGKPDSGRKV 176
Query: 82 FDELPERNLVTWNVIITGL---------------------VKWTGIIDGYSRMNRSNEAL 120
FD++P R++V+W ++ GL V WT +I Y + R +EA
Sbjct: 177 FDKMPGRSIVSWTTMLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAF 236
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LFRRM + +P+E TI+ +L A + G + + +H Y K GF D + LID
Sbjct: 237 QLFRRMQV-DDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGF-VLDCFLGTALID 294
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENF-ERMQKVGLKPN 239
Y+KCG + A K+F+ + K+L +W ++I+ +HG G+EA+ F E ++ ++P+
Sbjct: 295 MYSKCGSLQDARKVFD--VMQGKSLATWNSMITSLGVHGCGEEALSLFEEMEEEASVEPD 352
Query: 240 RSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288
+G ++GL++F +M++ + P +H C+I +LE+A +E+A +
Sbjct: 353 AITFVGVLSACANTGNVKDGLRYFTRMIQVYGISPIREHNACMIQLLEQALEVEKASNLV 412
Query: 289 SGIPS 293
+ S
Sbjct: 413 ESMDS 417
Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 74/305 (24%), Positives = 123/305 (40%), Gaps = 53/305 (17%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
F S S+ +RTC S Q+H K + + L + S G + +S +
Sbjct: 18 FRSPEASYFLRTCSNFSQLK---QIHTKIIKHNLTNDQLLVRQLISVSSSFGETQYASLV 74
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F++L + TWN++I L S ++ EAL LF M ++ + T
Sbjct: 75 FNQLQSPSTFTWNLMIRSL----------SVNHKPREALLLFILMMISHQSQFDKFTFPF 124
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE----- 196
V+ A + +R +HG K GF D+ N L+D Y KCG S K+F+
Sbjct: 125 VIKACLASSSIRLGTQVHGLAIKAGFFN-DVFFQNTLMDLYFKCGKPDSGRKVFDKMPGR 183
Query: 197 --------------DTSVDR----------KNLVSWTTIISGFAMHGMGKEAVENFERMQ 232
++ +D +N+VSWT +I+ + + EA + F RMQ
Sbjct: 184 SIVSWTTMLYGLVSNSQLDSAEIVFNQMPMRNVVSWTAMITAYVKNRRPDEAFQLFRRMQ 243
Query: 233 KVGLKPNR---------SWRIGEEGL-KFFDKMVEECEVLPDIKHYGCLIDILERAGRLE 282
+KPN S ++G + ++ + + D LID+ + G L+
Sbjct: 244 VDDVKPNEFTIVNLLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQ 303
Query: 283 QAEEV 287
A +V
Sbjct: 304 DARKV 308
>sp|Q9LJ69|PP243_ARATH Pentatricopeptide repeat-containing protein At3g18970
OS=Arabidopsis thaliana GN=PCMP-E93 PE=2 SV=1
Length = 472
Score = 159 bits (401), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 146/266 (54%), Gaps = 23/266 (8%)
Query: 42 LGTQLHAVFSKVGF--QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG 99
+G +H + K+GF +S + + T L Y G L+ + K+FDE+PER VTWN +I G
Sbjct: 129 VGRIVHGMVKKLGFLYESEL-IGTTLLHFYAKNGDLRYARKVFDEMPERTSVTWNAMIGG 187
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAAC-EYTEPSEITILAVLPAIWKNGEVRNCQLI 158
+ +R +A+ LFRR + C P++ T++ VL AI + G + L+
Sbjct: 188 YCSHKDKGNHNAR-----KAMVLFRRFSCCGSGVRPTDTTMVCVLSAISQTGLLEIGSLV 242
Query: 159 HGYGEKRGFNA-FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAM 217
HGY EK GF D+ + L+D Y+KCGC+ +A +FE V KN+ +WT++ +G A+
Sbjct: 243 HGYIEKLGFTPEVDVFIGTALVDMYSKCGCLNNAFSVFELMKV--KNVFTWTSMATGLAL 300
Query: 218 HGMGKEAVENFERMQKVGLKPN-----------RSWRIGEEGLKFFDKMVEECEVLPDIK 266
+G G E RM + G+KPN R + EEG++ F M V P I+
Sbjct: 301 NGRGNETPNLLNRMAESGIKPNEITFTSLLSAYRHIGLVEEGIELFKSMKTRFGVTPVIE 360
Query: 267 HYGCLIDILERAGRLEQAEEVASGIP 292
HYGC++D+L +AGR+++A + +P
Sbjct: 361 HYGCIVDLLGKAGRIQEAYQFILAMP 386
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 77/179 (43%), Gaps = 23/179 (12%)
Query: 152 VRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTI 211
+R +++HG +K GF + L+ YAK G + A K+F++ + + V+W +
Sbjct: 127 LRVGRIVHGMVKKLGFLYESELIGTTLLHFYAKNGDLRYARKVFDE--MPERTSVTWNAM 184
Query: 212 ISGFAMHG-----MGKEAVENFERMQ--KVGLKPNRSW------RIGEEGLKFFDKMV-- 256
I G+ H ++A+ F R G++P + I + GL +V
Sbjct: 185 IGGYCSHKDKGNHNARKAMVLFRRFSCCGSGVRPTDTTMVCVLSAISQTGLLEIGSLVHG 244
Query: 257 --EECEVLPDIKHY--GCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLIN 311
E+ P++ + L+D+ + G L A V + ++ NV W + L +N
Sbjct: 245 YIEKLGFTPEVDVFIGTALVDMYSKCGCLNNAFSVFELM--KVKNVFTWTSMATGLALN 301
>sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350
OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1
Length = 538
Score = 158 bits (400), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 99/308 (32%), Positives = 159/308 (51%), Gaps = 39/308 (12%)
Query: 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS-LGFLKDS 78
P + F Y ++++ LS +H K GF +V V TAL Y S + + +
Sbjct: 122 PRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYASSVSHITLA 181
Query: 79 SKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSN 117
+LFDE+ ERN+V+W +++G + W I+ ++
Sbjct: 182 RQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFL 241
Query: 118 EALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177
EA++LFRRM P+E+T++ VL A + G ++ + IH + +R ++ D+ VSN
Sbjct: 242 EAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSS-DVFVSNS 300
Query: 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL- 236
L+D Y KCG + AS +F+ S +K+L +W ++I+ FA+HG +EA+ FE M K+ +
Sbjct: 301 LVDLYGKCGNLEEASSVFKMAS--KKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNIN 358
Query: 237 --KPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQ 283
KP+ IG +G +FD M + P I+HYGCLID+L RAGR ++
Sbjct: 359 DIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDE 418
Query: 284 AEEVASGI 291
A EV S +
Sbjct: 419 ALEVMSTM 426
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 17/184 (9%)
Query: 115 RSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHV 174
++ A + FR M P+ VL + + L+H + K GF+ + + V
Sbjct: 105 HASSAFSFFRLMVNRSVPRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVV-V 163
Query: 175 SNCLIDTYA-KCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
L+ +YA I A +LF++ S +N+VSWT ++SG+A G AV FE M +
Sbjct: 164 QTALLHSYASSVSHITLARQLFDEMS--ERNVVSWTAMLSGYARSGDISNAVALFEDMPE 221
Query: 234 VGLKPNRSWR----------IGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQ 283
+ SW + E + F +M+ E + P+ C++ + G L+
Sbjct: 222 RDVP---SWNAILAACTQNGLFLEAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQL 278
Query: 284 AEEV 287
A+ +
Sbjct: 279 AKGI 282
>sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630
OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1
Length = 643
Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 166/344 (48%), Gaps = 67/344 (19%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DSF+++F+I+ G Q+H K G +SH++V T L MY G ++ + K+F
Sbjct: 105 DSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVF 164
Query: 83 DELPERNLVTWNVIITGL------------------------------------------ 100
DE+ + NLV WN +IT
Sbjct: 165 DEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKR 224
Query: 101 ----------VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
V W+ +I G + NE+ FR + + P+E+++ VL A ++G
Sbjct: 225 IFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMS-PNEVSLTGVLSACSQSG 283
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210
+++HG+ EK G+ ++ + V+N LID Y++CG + A +FE +++ +VSWT+
Sbjct: 284 SFEFGKILHGFVEKAGY-SWIVSVNNALIDMYSRCGNVPMARLVFEGMQ-EKRCIVSWTS 341
Query: 211 IISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEEC 259
+I+G AMHG G+EAV F M G+ P+ I EEG +F +M
Sbjct: 342 MIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVY 401
Query: 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ P+I+HYGC++D+ R+G+L++A + +P T +VWRT
Sbjct: 402 HIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPT-AIVWRT 444
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 102/241 (42%), Gaps = 21/241 (8%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
FL +++LQ+ + + P + + + ++ C G LH K G+ V
Sbjct: 254 FLYFRELQR------AGMSP--NEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVS 305
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
VN AL DMY G + + +F+ + E+ + V WT +I G + + EA+
Sbjct: 306 VNNALIDMYSRCGNVPMARLVFEGMQEKRCI---------VSWTSMIAGLAMHGQGEEAV 356
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LF M A T P I+ +++L A G + + ++ +I C++D
Sbjct: 357 RLFNEMTAYGVT-PDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVD 415
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
Y + G + A + +V W T++ + HG + A + +R+ + L PN
Sbjct: 416 LYGRSGKLQKAYDFICQMPIPPTAIV-WRTLLGACSSHGNIELAEQVKQRLNE--LDPNN 472
Query: 241 S 241
S
Sbjct: 473 S 473
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 118/294 (40%), Gaps = 52/294 (17%)
Query: 28 SFLIRTCVTL--SYPNLG--TQLHAVFSKVGFQSHVYVNTALGDMYVSLGF---LKDSSK 80
+ I C++L S NL TQ+H +F K G + Y L ++ ++ L + +
Sbjct: 2 TIAIHHCLSLLNSCKNLRALTQIHGLFIKYGVDTDSYFTGKL-ILHCAISISDALPYARR 60
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
L PE + +N ++ G YS + + ++A+F M + P +
Sbjct: 61 LLLCFPEPDAFMFNTLVRG----------YSESDEPHNSVAVFVEMMRKGFVFPDSFSFA 110
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
V+ A+ +R +H K G + + V LI Y CGC+ A K+F++ +
Sbjct: 111 FVIKAVENFRSLRTGFQMHCQALKHGLESH-LFVGTTLIGMYGGCGCVEFARKVFDE--M 167
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECE 260
+ NLV+W +I+ A E F++M ++ + SW + G
Sbjct: 168 HQPNLVAWNAVITACFRGNDVAGAREIFDKML---VRNHTSWNVMLAGYI---------- 214
Query: 261 VLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYF 314
+AG LE A+ + S +P + + V W T + + N F
Sbjct: 215 ----------------KAGELESAKRIFSEMPHR--DDVSWSTMIVGIAHNGSF 250
>sp|Q3ECB8|PP128_ARATH Pentatricopeptide repeat-containing protein At1g77170
OS=Arabidopsis thaliana GN=PCMP-E21 PE=2 SV=1
Length = 467
Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 102/328 (31%), Positives = 169/328 (51%), Gaps = 48/328 (14%)
Query: 3 VYKQLQQIYIHSHSPLPP------------LFDSFTYSFLIRTCVTLSYPNLGTQLHAVF 50
++ + + YI SPL L D ++ +I+ V + LG +LH+V
Sbjct: 84 LWNNIMRSYIRHESPLDAIQVYLGMVRSTVLPDRYSLPIVIKAAVQIHDFTLGKELHSVA 143
Query: 51 SKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGY 110
++GF + + +Y G +++ K+FDE PER L +WN II GL
Sbjct: 144 VRLGFVGDEFCESGFITLYCKAGEFENARKVFDENPERKLGSWNAIIGGL---------- 193
Query: 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG------EVRNCQLIHGYGEK 164
+ R+NEA+ +F M EP + T+++V + G ++ C L EK
Sbjct: 194 NHAGRANEAVEMFVDMKRSGL-EPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTEEK 252
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
DI + N LID Y KCG + AS +FE+ + ++N+VSW+++I G+A +G EA
Sbjct: 253 S-----DIMMLNSLIDMYGKCGRMDLASHIFEE--MRQRNVVSWSSMIVGYAANGNTLEA 305
Query: 225 VENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLID 273
+E F +M++ G++PN+ +G EEG +F M E E+ P + HYGC++D
Sbjct: 306 LECFRQMREFGVRPNKITFVGVLSACVHGGLVEEGKTYFAMMKSEFELEPGLSHYGCIVD 365
Query: 274 ILERAGRLEQAEEVASGIPSQITNVVVW 301
+L R G+L++A++V +P + NV+VW
Sbjct: 366 LLSRDGQLKEAKKVVEEMPMK-PNVMVW 392
>sp|O49399|PP321_ARATH Pentatricopeptide repeat-containing protein At4g18840
OS=Arabidopsis thaliana GN=PCMP-E101 PE=3 SV=2
Length = 545
Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/347 (27%), Positives = 168/347 (48%), Gaps = 67/347 (19%)
Query: 18 LPPLF-DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY------- 69
L P+F D ++++F+++ C G Q+H +F K G + V+V L ++Y
Sbjct: 133 LGPVFPDKYSFTFVLKACAAFCGFEEGRQIHGLFIKSGLVTDVFVENTLVNVYGRSGYFE 192
Query: 70 ------------------------VSLGFLKDSSKLFDELPERNLVTWNVIITG------ 99
+ G + ++ LFDE+ ERN+ +WN +I+G
Sbjct: 193 IARKVLDRMPVRDAVSWNSLLSAYLEKGLVDEARALFDEMEERNVESWNFMISGYAAAGL 252
Query: 100 ---------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+V W ++ Y+ + NE L +F +M +P T+++VL
Sbjct: 253 VKEAKEVFDSMPVRDVVSWNAMVTAYAHVGCYNEVLEVFNKMLDDSTEKPDGFTLVSVLS 312
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A G + + +H Y +K G + ++ L+D Y+KCG I A ++F TS +++
Sbjct: 313 ACASLGSLSQGEWVHVYIDKHGIE-IEGFLATALVDMYSKCGKIDKALEVFRATS--KRD 369
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFD 253
+ +W +IIS ++HG+GK+A+E F M G KPN IG ++ K F+
Sbjct: 370 VSTWNSIISDLSVHGLGKDALEIFSEMVYEGFKPNGITFIGVLSACNHVGMLDQARKLFE 429
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
M V P I+HYGC++D+L R G++E+AEE+ + IP+ ++++
Sbjct: 430 MMSSVYRVEPTIEHYGCMVDLLGRMGKIEEAEELVNEIPADEASILL 476
>sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2
SV=2
Length = 638
Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 156/296 (52%), Gaps = 30/296 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ F+++ C + + G Q+H K GF VYVN L +Y S G L + K+F
Sbjct: 150 DKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVF 209
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
DE+PER+LV+WN +I LV R + AL LFR M EP T+ +V
Sbjct: 210 DEMPERSLVSWNSMIDALV----------RFGEYDSALQLFREMQ--RSFEPDGYTMQSV 257
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRG--FNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
L A G + H + ++ A D+ V N LI+ Y KCG + A ++F+ +
Sbjct: 258 LSACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQ--GM 315
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERM--QKVGLKPNRSWRIG-----------EE 247
+++L SW +I GFA HG +EA+ F+RM ++ ++PN +G +
Sbjct: 316 QKRDLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNK 375
Query: 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
G ++FD MV + + P ++HYGC++D++ RAG + +A ++ +P + + V+WR+
Sbjct: 376 GRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMK-PDAVIWRS 430
>sp|Q9MA95|PP214_ARATH Putative pentatricopeptide repeat-containing protein At3g05240
OS=Arabidopsis thaliana GN=PCMP-E82 PE=3 SV=2
Length = 565
Score = 156 bits (394), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/263 (38%), Positives = 145/263 (55%), Gaps = 29/263 (11%)
Query: 51 SKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGY 110
SKVGF +V + T+L DMY G L+ + LFD +PER LV+WN IITG Y
Sbjct: 245 SKVGF--NVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITG----------Y 292
Query: 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF 170
S+ + EAL +F M P ++T L+V+ A G + Q IH Y K GF
Sbjct: 293 SQNGDAEEALCMFLDMLDLGIA-PDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGF-VK 350
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
D + L++ YAK G SA K FED +++K+ ++WT +I G A HG G EA+ F+R
Sbjct: 351 DAAIVCALVNMYAKTGDAESAKKAFED--LEKKDTIAWTVVIIGLASHGHGNEALSIFQR 408
Query: 231 MQKVG-LKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERA 278
MQ+ G P+ +G EEG ++F +M + + P ++HYGC++DIL RA
Sbjct: 409 MQEKGNATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRA 468
Query: 279 GRLEQAEEVASGIPSQITNVVVW 301
GR E+AE + +P + NV +W
Sbjct: 469 GRFEEAERLVKTMPVK-PNVNIW 490
Score = 111 bits (277), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/240 (27%), Positives = 128/240 (53%), Gaps = 25/240 (10%)
Query: 8 QQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGD 67
Q++ +SP D FT+ ++++ C L G+ +H K GF+ ++YV+T L
Sbjct: 96 QEMLRKGYSP-----DYFTFPYVLKACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLH 150
Query: 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA 127
MY+ G + ++F+++P+ N+V W +I+G V NR ++A+ FR M
Sbjct: 151 MYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVN----------NNRFSDAIEAFREMQ 200
Query: 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN-------AFDIHVSNCLID 180
+ + +E ++ +L A + ++ + HG+ + GF+ F++ ++ LID
Sbjct: 201 S-NGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGFNVILATSLID 259
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
YAKCG + +A LF+ + + LVSW +II+G++ +G +EA+ F M +G+ P++
Sbjct: 260 MYAKCGDLRTARYLFD--GMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDK 317
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 19/218 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T+ +IR + LG +HA SK GF + AL +MY G + + K F
Sbjct: 316 DKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCALVNMYAKTGDAESAKKAF 375
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++L +++ + W V+I GL + NEAL++F+RM P IT L V
Sbjct: 376 EDLEKKDTIAWTVVIIGL----------ASHGHGNEALSIFQRMQEKGNATPDGITYLGV 425
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN--CLIDTYAKCGCIFSASKLFEDTSV 200
L A G V Q + E R + + V + C++D ++ G A +L + V
Sbjct: 426 LYACSHIGLVEEGQ--RYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPV 483
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
+ N+ W +++G +H E +E +R++ + +P
Sbjct: 484 -KPNVNIWGALLNGCDIH----ENLELTDRIRSMVAEP 516
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 4/139 (2%)
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
W +I GYS ++AL ++ M Y+ P T VL A +++ +HG+
Sbjct: 75 WNSMIRGYSNSPNPDKALIFYQEMLRKGYS-PDYFTFPYVLKACSGLRDIQFGSCVHGFV 133
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
K GF +++VS CL+ Y CG + ++FED + + N+V+W ++ISGF +
Sbjct: 134 VKTGFEV-NMYVSTCLLHMYMCCGEVNYGLRVFED--IPQWNVVAWGSLISGFVNNNRFS 190
Query: 223 EAVENFERMQKVGLKPNRS 241
+A+E F MQ G+K N +
Sbjct: 191 DAIEAFREMQSNGVKANET 209
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 155 bits (393), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 159/288 (55%), Gaps = 29/288 (10%)
Query: 23 DSFTYSFLIRTCV----TLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
D FTY+++++ CV T+++ G ++HA ++ G+ SHVY+ T L DMY G + +
Sbjct: 177 DRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYA 236
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA-ACEYTEPSEI 137
S +F +P RN+V+W+ +I Y++ ++ EAL FR M + + P+ +
Sbjct: 237 SYVFGGMPVRNVVSWSAMIA----------CYAKNGKAFEALRTFREMMRETKDSSPNSV 286
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
T+++VL A + +LIHGY +RG ++ + V + L+ Y +CG + ++F D
Sbjct: 287 TMVSVLQACASLAALEQGKLIHGYILRRGLDSI-LPVISALVTMYGRCGKLEVGQRVF-D 344
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------E 246
DR ++VSW ++IS + +HG GK+A++ FE M G P + E
Sbjct: 345 RMHDR-DVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVE 403
Query: 247 EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
EG + F+ M + + P I+HY C++D+L RA RL++A ++ + ++
Sbjct: 404 EGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTE 451
Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 95/211 (45%), Gaps = 16/211 (7%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
TY LI C S + ++H G ++ T L MY LG + + K+FD+
Sbjct: 79 TYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKT 138
Query: 86 PERNLVTWNVIITGLV---KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+R + WN + L ++ Y +MNR F + SE T+ +
Sbjct: 139 RKRTIYVWNALFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHL 198
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+ + IH + +RG+++ +++ L+D YA+ GC+ AS +F V
Sbjct: 199 MKG----------KEIHAHLTRRGYSSH-VYIMTTLVDMYARFGCVDYASYVFGGMPV-- 245
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
+N+VSW+ +I+ +A +G EA+ F M +
Sbjct: 246 RNVVSWSAMIACYAKNGKAFEALRTFREMMR 276
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/145 (20%), Positives = 63/145 (43%), Gaps = 18/145 (12%)
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
D ++ LI Y+ G + A K+F+ T ++ + W + + G G+E + + +
Sbjct: 111 DPFLATKLIGMYSDLGSVDYARKVFDKTR--KRTIYVWNALFRALTLAGHGEEVLGLYWK 168
Query: 231 MQKVGLKPNR-----SWRIGEEGLKFFDKMVEECEVLPDIKHYG---------CLIDILE 276
M ++G++ +R + + +++ E+ + G L+D+
Sbjct: 169 MNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVDMYA 228
Query: 277 RAGRLEQAEEVASGIPSQITNVVVW 301
R G ++ A V G+P + NVV W
Sbjct: 229 RFGCVDYASYVFGGMP--VRNVVSW 251
>sp|Q9C6T2|PPR68_ARATH Pentatricopeptide repeat-containing protein At1g31920
OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1
Length = 606
Score = 155 bits (392), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/295 (31%), Positives = 157/295 (53%), Gaps = 31/295 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D+FTY L++ C L G Q+H K+G ++ V+V +L +MY G ++ SS +F
Sbjct: 131 DNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRCGEMELSSAVF 190
Query: 83 DELPERNLVTWNVIIT---GLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
++L + +W+ +++ G+ W+ E L LFR M + + E +
Sbjct: 191 EKLESKTAASWSSMVSARAGMGMWS-------------ECLLLFRGMCSETNLKAEESGM 237
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
++ L A G + IHG+ R + +I V L+D Y KCGC+ A +F+
Sbjct: 238 VSALLACANTGALNLGMSIHGF-LLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQ--K 294
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
++++N ++++ +ISG A+HG G+ A+ F +M K GL+P+ + +EG
Sbjct: 295 MEKRNNLTYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEG 354
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ F +M++E +V P +HYGCL+D+L RAG LE+A E IP + N V+WRT
Sbjct: 355 RRVFAEMLKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIE-KNDVIWRT 408
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Query: 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
+I GY + EAL + M EP T +L A + +R + IHG K
Sbjct: 103 MIRGYVNVMSFEEALCFYNEMMQ-RGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKL 161
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225
G A D+ V N LI+ Y +CG + +S +FE ++ K SW++++S A GM E +
Sbjct: 162 GLEA-DVFVQNSLINMYGRCGEMELSSAVFE--KLESKTAASWSSMVSARAGMGMWSECL 218
Query: 226 ENFERM-QKVGLKPNRS 241
F M + LK S
Sbjct: 219 LLFRGMCSETNLKAEES 235
>sp|Q9MA50|PPR13_ARATH Pentatricopeptide repeat-containing protein At1g05750,
chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2
SV=1
Length = 500
Score = 155 bits (391), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 156/313 (49%), Gaps = 39/313 (12%)
Query: 23 DSFTYSFLIRTC--VTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSS 79
+ T+ L+ C T LG LH K+G ++HV V TA+ MY G K +
Sbjct: 70 NHITFIALLSGCGDFTSGSEALGDLLHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKAR 129
Query: 80 KLFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNE 118
+FD + ++N VTWN +I G L+ WT +I+G+ + E
Sbjct: 130 LVFDYMEDKNSVTWNTMIDGYMRSGQVDNAAKMFDKMPERDLISWTAMINGFVKKGYQEE 189
Query: 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
AL FR M +P + I+A L A G + +H Y + F ++ VSN L
Sbjct: 190 ALLWFREMQ-ISGVKPDYVAIIAALNACTNLGALSFGLWVHRYVLSQDFKN-NVRVSNSL 247
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238
ID Y +CGC+ A ++F + ++++ +VSW ++I GFA +G E++ F +MQ+ G KP
Sbjct: 248 IDLYCRCGCVEFARQVFYN--MEKRTVVSWNSVIVGFAANGNAHESLVYFRKMQEKGFKP 305
Query: 239 NRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
+ G EEGL++F M + + P I+HYGCL+D+ RAGRLE A ++
Sbjct: 306 DAVTFTGALTACSHVGLVEEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKL 365
Query: 288 ASGIPSQITNVVV 300
+P + VV+
Sbjct: 366 VQSMPMKPNEVVI 378
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 86/200 (43%), Gaps = 34/200 (17%)
Query: 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL 90
+ C L + G +H F+++V V+ +L D+Y G ++ + ++F + +R +
Sbjct: 213 LNACTNLGALSFGLWVHRYVLSQDFKNNVRVSNSLIDLYCRCGCVEFARQVFYNMEKRTV 272
Query: 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG 150
V+WN +I G++ ++E+L FR+M + +P +T L A G
Sbjct: 273 VSWNSVIV----------GFAANGNAHESLVYFRKMQEKGF-KPDAVTFTGALTACSHVG 321
Query: 151 EVRNCQLIHGYGEKRGFNAFDIHVSN-----------CLIDTYAKCGCIFSASKLFEDTS 199
V + G F I + CL+D Y++ G + A KL +
Sbjct: 322 LV-----------EEGLRYFQIMKCDYRISPRIEHYGCLVDLYSRAGRLEDALKLVQSMP 370
Query: 200 VDRKNLVSWTTIISGFAMHG 219
+ + N V ++++ + HG
Sbjct: 371 M-KPNEVVIGSLLAACSNHG 389
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 24/136 (17%)
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDI 265
VSWT+ I+ +G EA + F M G++PN I L E L D+
Sbjct: 37 VSWTSRINLLTRNGRLAEAAKEFSDMTLAGVEPNHITFIAL--LSGCGDFTSGSEALGDL 94
Query: 266 KH-YGC--------------LIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLI 310
H Y C +I + + GR ++A V + + N V W T +I
Sbjct: 95 LHGYACKLGLDRNHVMVGTAIIGMYSKRGRFKKARLVFDYMEDK--NSVTWNT-----MI 147
Query: 311 NSYFFSPITLNSQRLF 326
+ Y S N+ ++F
Sbjct: 148 DGYMRSGQVDNAAKMF 163
>sp|Q9LS72|PP261_ARATH Pentatricopeptide repeat-containing protein At3g29230
OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1
Length = 600
Score = 154 bits (390), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 105/398 (26%), Positives = 180/398 (45%), Gaps = 109/398 (27%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
F V+ ++Q+ + + D+FTY FL++ C S+ + +H K+G S +Y
Sbjct: 102 FFVFSEMQRFGLFA--------DNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDIY 153
Query: 61 VNTALGDMY---------------------------------VSLGFLKDSSKLFDELPE 87
V AL D Y V G L+D+ +LFDE+P+
Sbjct: 154 VPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEMPQ 213
Query: 88 RNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALALFRRM 126
R+L++WN ++ G V W+ ++ GYS+ A +F +M
Sbjct: 214 RDLISWNTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKM 273
Query: 127 A------------ACEYTEP--------------------SEITILAVLPAIWKNGEVRN 154
Y E ++++L A ++G +
Sbjct: 274 PLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSL 333
Query: 155 CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISG 214
IH ++ + + +V N L+D YAKCG + A +F D + +K+LVSW T++ G
Sbjct: 334 GMRIHSILKRSNLGS-NAYVLNALLDMYAKCGNLKKAFDVFND--IPKKDLVSWNTMLHG 390
Query: 215 FAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLP 263
+HG GKEA+E F RM++ G++P++ I +EG+ +F M + +++P
Sbjct: 391 LGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLCSCNHAGLIDEGIDYFYSMEKVYDLVP 450
Query: 264 DIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
++HYGCL+D+L R GRL++A +V +P + NVV+W
Sbjct: 451 QVEHYGCLVDLLGRVGRLKEAIKVVQTMPME-PNVVIW 487
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 106/215 (49%), Gaps = 17/215 (7%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD+ ++ C +LG ++H++ + S+ YV AL DMY G LK + +
Sbjct: 313 FDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDV 372
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+++P+++LV+WN ++ GL + G+ + EA+ LF RM E P ++T +A
Sbjct: 373 FNDIPKKDLVSWNTMLHGLG-----VHGHGK-----EAIELFSRMRR-EGIRPDKVTFIA 421
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAF-DIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
VL + G + + + Y ++ ++ + CL+D + G + A K+ + +
Sbjct: 422 VLCSCNHAGLIDE-GIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPM 480
Query: 201 DRKNLVSWTTIISGFAMHG---MGKEAVENFERMQ 232
+ N+V W ++ MH + KE ++N ++
Sbjct: 481 E-PNVVIWGALLGACRMHNEVDIAKEVLDNLVKLD 514
>sp|Q9LJJ1|PP259_ARATH Putative pentatricopeptide repeat-containing protein At3g28640
OS=Arabidopsis thaliana GN=PCMP-E79 PE=3 SV=1
Length = 504
Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 150/281 (53%), Gaps = 26/281 (9%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
T+ FLI C+ + ++G Q+H K G F S +V T + +YV L D+ K+FD
Sbjct: 117 LTFHFLIVACLKACFFSVGKQIHCWVVKNGVFLSDSHVQTGVLRIYVEDKLLLDARKVFD 176
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
E+P+ ++V W+V++ +GY R +E L +FR M + EP E ++ L
Sbjct: 177 EIPQPDVVKWDVLM----------NGYVRCGLGSEGLEVFREMLV-KGLEPDEFSVTTAL 225
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
A + G + + IH + +K+ + D+ V L+D YAKCGCI +A ++F+ + R+
Sbjct: 226 TACAQVGALAQGKWIHEFVKKKSWIESDVFVGTALVDMYAKCGCIETAVEVFKKLT--RR 283
Query: 204 NLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNRSWRIG-----------EEGLKF 251
N+ SW +I G+A +G K+A+ ER+++ G+KP+ +G EEG
Sbjct: 284 NVFSWAALIGGYAAYGYAKKAMTCLERLEREDGIKPDSVVLLGVLAACAHGGFLEEGRSM 343
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+ M E+ P +HY C++D++ RAGRL+ A + +P
Sbjct: 344 LENMEARYEITPKHEHYSCIVDLMCRAGRLDDALNLIEKMP 384
>sp|Q9ZUT4|PP192_ARATH Pentatricopeptide repeat-containing protein At2g37320
OS=Arabidopsis thaliana GN=PCMP-E50 PE=2 SV=1
Length = 500
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 99/329 (30%), Positives = 173/329 (52%), Gaps = 28/329 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
FD++ S +R+C G+ H + K GF S VY+ ++L +Y G ++++ K+
Sbjct: 118 FDAYGLSSAVRSCGLNRDFRTGSGFHCLALKGGFISDVYLGSSLVVLYRDSGEVENAYKV 177
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F+E+PERN+V+ WT +I G+++ R + L L+ +M ++P++ T A
Sbjct: 178 FEEMPERNVVS----------WTAMISGFAQEWRVDICLKLYSKMRK-STSDPNDYTFTA 226
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+L A +G + + +H G ++ +H+SN LI Y KCG + A ++F+ S
Sbjct: 227 LLSACTGSGALGQGRSVHCQTLHMGLKSY-LHISNSLISMYCKCGDLKDAFRIFDQFS-- 283
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQ-KVGLKPNRSWRIG-----------EEGL 249
K++VSW ++I+G+A HG+ +A+E FE M K G KP+ +G +EG
Sbjct: 284 NKDVVSWNSMIAGYAQHGLAMQAIELFELMMPKSGTKPDAITYLGVLSSCRHAGLVKEGR 343
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLL 309
KFF+ M E + P++ HY CL+D+L R G L++A E+ +P + N V+W +
Sbjct: 344 KFFNLMAEH-GLKPELNHYSCLVDLLGRFGLLQEALELIENMPMK-PNSVIWGSLLFSCR 401
Query: 310 INSYFFSPITLNSQRLFFFPAALYALTQI 338
++ ++ I +RL P Q+
Sbjct: 402 VHGDVWTGIRAAEERLMLEPDCAATHVQL 430
>sp|Q9FLS9|PP441_ARATH Pentatricopeptide repeat-containing protein At5g61800
OS=Arabidopsis thaliana GN=PCMP-E8 PE=2 SV=1
Length = 499
Score = 151 bits (382), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 99/314 (31%), Positives = 159/314 (50%), Gaps = 40/314 (12%)
Query: 18 LPPLFDSFTYSFLIRTCVTLSYPNLG--TQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL 75
+PP D T+ F+ + C +L LH + G S ++ L +Y + +
Sbjct: 111 VPP--DFHTFPFVFKACAAKKNGDLTLVKTLHCQALRFGLLSDLFTLNTLIRVYSLIAPI 168
Query: 76 KDSSKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMN 114
+ +LFDE P+R++VT+NV+I GLVK W +I GY++MN
Sbjct: 169 DSALQLFDENPQRDVVTYNVLIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYAQMN 228
Query: 115 RSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHV 174
EA+ LF M A +P + I++ L A ++G+ + + IH Y +++ D +
Sbjct: 229 HCREAIKLFDEMVALGL-KPDNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRL-FIDSFL 286
Query: 175 SNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234
+ L+D YAKCG I +A ++FE S K L +W +I+G AMHG G+ V+ F +M
Sbjct: 287 ATGLVDFYAKCGFIDTAMEIFELCS--DKTLFTWNAMITGLAMHGNGELTVDYFRKMVSS 344
Query: 235 GLKPNR----SWRIG-------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQ 283
G+KP+ S +G +E FD+M +V ++KHYGC+ D+L RAG +E+
Sbjct: 345 GIKPDGVTFISVLVGCSHSGLVDEARNLFDQMRSLYDVNREMKHYGCMADLLGRAGLIEE 404
Query: 284 AEEVASGIPSQITN 297
A E+ +P N
Sbjct: 405 AAEMIEQMPKDGGN 418
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 86/206 (41%), Gaps = 34/206 (16%)
Query: 60 YVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEA 119
++ T L D Y GF+ + ++F+ ++ L TWN +ITGL M+ + E
Sbjct: 285 FLATGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLA-----------MHGNGEL 333
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNG---EVRNC--QLIHGYGEKRGFNAFDIHV 174
+ R +P +T ++VL +G E RN Q+ Y R +
Sbjct: 334 TVDYFRKMVSSGIKPDGVTFISVLVGCSHSGLVDEARNLFDQMRSLYDVNREMKHY---- 389
Query: 175 SNCLIDTYAKCGCIFSASKLFEDTSVD---RKNLVSWTTIISGFAMHGMGKEAVENFERM 231
C+ D + G I A+++ E D R+ L++W+ ++ G +HG N E
Sbjct: 390 -GCMADLLGRAGLIEEAAEMIEQMPKDGGNREKLLAWSGLLGGCRIHG-------NIEIA 441
Query: 232 QKVGLKPNRSWRIGEEGLKFFDKMVE 257
+K NR + E + MVE
Sbjct: 442 EKAA---NRVKALSPEDGGVYKVMVE 464
>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680
OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1
Length = 727
Score = 151 bits (381), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 144/273 (52%), Gaps = 25/273 (9%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
+T ++ C + Y G QLH+ K+GF+ H++ TAL DMY G L D+ K FD
Sbjct: 323 YTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDC 382
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
L ER++ WT +I GY + + + EAL L+RRM P++ T+ +VL
Sbjct: 383 LQERDVAL----------WTSLISGYVQNSDNEEALILYRRMKTAGII-PNDPTMASVLK 431
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A + + +HG+ K GF ++ + + L Y+KCG + + +F T K+
Sbjct: 432 ACSSLATLELGKQVHGHTIKHGF-GLEVPIGSALSTMYSKCGSLEDGNLVFRRTP--NKD 488
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFD 253
+VSW +ISG + +G G EA+E FE M G++P+ + E G +F+
Sbjct: 489 VVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFN 548
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286
M ++ + P + HY C++D+L RAG+L++A+E
Sbjct: 549 MMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKE 581
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 117/226 (51%), Gaps = 14/226 (6%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L +++T + + + +L +G Q HA+ K+ +YV+T+L MY G ++D K
Sbjct: 115 LPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGLVEDGLK 174
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRR-MAACEYTEPSEITI 139
+F +PERN TW+ +++ GY+ R EA+ +F + E S+
Sbjct: 175 VFAYMPERNTYTWSTMVS----------GYATRGRVEEAIKVFNLFLREKEEGSDSDYVF 224
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
AVL ++ V + IH K G F + +SN L+ Y+KC + A K+F D+S
Sbjct: 225 TAVLSSLAATIYVGLGRQIHCITIKNGLLGF-VALSNALVTMYSKCESLNEACKMF-DSS 282
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG 245
DR N ++W+ +++G++ +G EAV+ F RM G+KP+ +G
Sbjct: 283 GDR-NSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVG 327
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 13/187 (6%)
Query: 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102
G +H + G + + L + Y G L + +F+ + +++V+WN +ITG +
Sbjct: 33 GRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQ 92
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
GI Y+ M LFR M A + P+ T+ + A + H
Sbjct: 93 NGGISSSYTVMQ-------LFREMRAQDIL-PNAYTLAGIFKAESSLQSSTVGRQAHALV 144
Query: 163 EKRGFNAF-DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
K ++F DI+V L+ Y K G + K+F + +N +W+T++SG+A G
Sbjct: 145 VK--MSSFGDIYVDTSLVGMYCKAGLVEDGLKVF--AYMPERNTYTWSTMVSGYATRGRV 200
Query: 222 KEAVENF 228
+EA++ F
Sbjct: 201 EEAIKVF 207
>sp|Q9CAA8|PP108_ARATH Putative pentatricopeptide repeat-containing protein At1g68930
OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1
Length = 743
Score = 149 bits (376), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 140/282 (49%), Gaps = 25/282 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D + + ++ C L N G Q+HA + FQ H+YV +AL DMY L + +
Sbjct: 268 MDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTV 327
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + ++N+V+ WT ++ GY + R+ EA+ +F M +P T+
Sbjct: 328 FDRMKQKNVVS----------WTAMVVGYGQTGRAEEAVKIFLDMQRSG-IDPDHYTLGQ 376
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+ A + HG G + + VSN L+ Y KCG I +++LF + +V
Sbjct: 377 AISACANVSSLEEGSQFHGKAITSGLIHY-VTVSNSLVTLYGKCGDIDDSTRLFNEMNV- 434
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
++ VSWT ++S +A G E ++ F++M + GLKP+ G E+G +
Sbjct: 435 -RDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQR 493
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+F M E ++P I HY C+ID+ R+GRLE+A +G+P
Sbjct: 494 YFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMP 535
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 116/230 (50%), Gaps = 24/230 (10%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
+++ + + +LG Q+H K+GF+S++ V + L MY ++G + D+ K+F L +RN
Sbjct: 145 MLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRN 204
Query: 90 LVTWNVIITGL--------------------VKWTGIIDGYSRMNRSNEALALFRRMAAC 129
V +N ++ GL V W +I G ++ + EA+ FR M
Sbjct: 205 TVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKV- 263
Query: 130 EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
+ + + +VLPA G + + IH + F I+V + LID Y KC C+
Sbjct: 264 QGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDH-IYVGSALIDMYCKCKCLH 322
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
A +F+ + +KN+VSWT ++ G+ G +EAV+ F MQ+ G+ P+
Sbjct: 323 YAKTVFD--RMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPD 370
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 87/201 (43%), Gaps = 41/201 (20%)
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y G + + F++LP+R+ VTWNV +I+GYS A+ + M
Sbjct: 82 YSKAGLISEMESTFEKLPDRDGVTWNV----------LIEGYSLSGLVGAAVKAYNTMMR 131
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
+ +T++ +L NG V + IHG K GF ++ + V + L+ YA GCI
Sbjct: 132 DFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESY-LLVGSPLLYMYANVGCI 190
Query: 189 FSASKLFEDTSVDR-----------------------------KNLVSWTTIISGFAMHG 219
A K+F DR K+ VSW +I G A +G
Sbjct: 191 SDAKKVFYGLD-DRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNG 249
Query: 220 MGKEAVENFERMQKVGLKPNR 240
+ KEA+E F M+ GLK ++
Sbjct: 250 LAKEAIECFREMKVQGLKMDQ 270
>sp|O80488|PPR23_ARATH Pentatricopeptide repeat-containing protein At1g09190
OS=Arabidopsis thaliana GN=PCMP-E70 PE=2 SV=1
Length = 484
Score = 149 bits (375), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 155/312 (49%), Gaps = 37/312 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D +TY+ L+++C +LS G +H + GF + + ++Y S G + D+ K+F
Sbjct: 101 DEYTYAPLLKSCSSLSDLRFGKCVHGELIRTGFHRLGKIRIGVVELYTSGGRMGDAQKVF 160
Query: 83 DELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALA 121
DE+ ERN+V WN++I G +V W +I S+ R EAL
Sbjct: 161 DEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSERSIVSWNSMISSLSKCGRDREALE 220
Query: 122 LFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181
LF M + +P E T++ VLP G + + IH E G I V N L+D
Sbjct: 221 LFCEMIDQGF-DPDEATVVTVLPISASLGVLDTGKWIHSTAESSGLFKDFITVGNALVDF 279
Query: 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG-LKPNR 240
Y K G + +A+ +F + R+N+VSW T+ISG A++G G+ ++ F+ M + G + PN
Sbjct: 280 YCKSGDLEAATAIFR--KMQRRNVVSWNTLISGSAVNGKGEFGIDLFDAMIEEGKVAPNE 337
Query: 241 SWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289
+ +G E G + F M+E ++ +HYG ++D++ R+GR+ +A +
Sbjct: 338 ATFLGVLACCSYTGQVERGEELFGLMMERFKLEARTEHYGAMVDLMSRSGRITEAFKFLK 397
Query: 290 GIPSQITNVVVW 301
+P N +W
Sbjct: 398 NMPVN-ANAAMW 408
>sp|Q9LJI9|PP260_ARATH Pentatricopeptide repeat-containing protein At3g28660
OS=Arabidopsis thaliana GN=PCMP-E80 PE=2 SV=1
Length = 504
Score = 148 bits (374), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 148/281 (52%), Gaps = 26/281 (9%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
T+ FLI C+ + ++G Q+H K G F S +V T + +YV L D+ K+FD
Sbjct: 117 LTFHFLIVACLKACFFSVGKQIHCWVVKNGVFLSDGHVQTGVLRIYVEDKLLFDARKVFD 176
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
E+P+ ++V W+V++ +GY R +E L +F+ M EP E ++ L
Sbjct: 177 EIPQPDVVKWDVLM----------NGYVRCGLGSEGLEVFKEMLV-RGIEPDEFSVTTAL 225
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203
A + G + + IH + +K+ + D+ V L+D YAKCGCI +A ++FE + R+
Sbjct: 226 TACAQVGALAQGKWIHEFVKKKRWIESDVFVGTALVDMYAKCGCIETAVEVFEKLT--RR 283
Query: 204 NLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNRSWRIG-----------EEGLKF 251
N+ SW +I G+A +G K+A +R+++ G+KP+ +G EEG
Sbjct: 284 NVFSWAALIGGYAAYGYAKKATTCLDRIEREDGIKPDSVVLLGVLAACAHGGFLEEGRTM 343
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+ M + P +HY C++D++ RAGRL+ A ++ +P
Sbjct: 344 LENMEARYGITPKHEHYSCIVDLMCRAGRLDDALDLIEKMP 384
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 148 bits (374), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 89/291 (30%), Positives = 162/291 (55%), Gaps = 27/291 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT++ ++ +C+ S LG Q+H + K + SH++V ++L DMY G +K++ ++F
Sbjct: 152 NEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIF 211
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ LPER++V+ T II GY+++ EAL +F R+ + E P+ +T ++
Sbjct: 212 ECLPERDVVS----------CTAIIAGYAQLGLDEEALEMFHRLHS-EGMSPNYVTYASL 260
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A+ + + + H + +R + + + N LID Y+KCG + A +LF++ +
Sbjct: 261 LTALSGLALLDHGKQAHCHVLRRELPFYAV-LQNSLIDMYSKCGNLSYARRLFDN--MPE 317
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQ-KVGLKPN-----------RSWRIGEEGLK 250
+ +SW ++ G++ HG+G+E +E F M+ + +KP+ R+ + GL
Sbjct: 318 RTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLN 377
Query: 251 FFDKMVE-ECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV 300
FD MV E P +HYGC++D+L RAGR+++A E +PS+ T V+
Sbjct: 378 IFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVL 428
Score = 108 bits (269), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/287 (29%), Positives = 135/287 (47%), Gaps = 24/287 (8%)
Query: 18 LPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD 77
L P Y L+ C+ G ++HA K + Y+ T L Y L+D
Sbjct: 46 LGPEMGFHGYDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLED 105
Query: 78 SSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137
+ K+ DE+PE+N+V+ WT +I YS+ S+EAL +F M + +P+E
Sbjct: 106 ARKVLDEMPEKNVVS----------WTAMISRYSQTGHSSEALTVFAEMMRSD-GKPNEF 154
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197
T VL + + + + IHG K +++ I V + L+D YAK G I A ++FE
Sbjct: 155 TFATVLTSCIRASGLGLGKQIHGLIVKWNYDSH-IFVGSSLLDMYAKAGQIKEAREIFE- 212
Query: 198 TSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN----RSWRIGEEGLKFFD 253
+ +++VS T II+G+A G+ +EA+E F R+ G+ PN S GL D
Sbjct: 213 -CLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLD 271
Query: 254 KMVE-ECEVL-PDIKHYGC----LIDILERAGRLEQAEEVASGIPSQ 294
+ C VL ++ Y LID+ + G L A + +P +
Sbjct: 272 HGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPER 318
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 147 bits (372), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 135/250 (54%), Gaps = 25/250 (10%)
Query: 46 LHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTG 105
+H K F SH V+TAL +Y L ++ + KLFDE PE++L +WN +I+
Sbjct: 341 IHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMIS------- 393
Query: 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165
GY++ + +A++LFR M E++ P+ +TI +L A + G + + +H
Sbjct: 394 ---GYTQNGLTEDAISLFREMQKSEFS-PNPVTITCILSACAQLGALSLGKWVHDLVRST 449
Query: 166 GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225
F + I+VS LI YAKCG I A +LF+ + +KN V+W T+ISG+ +HG G+EA+
Sbjct: 450 DFES-SIYVSTALIGMYAKCGSIAEARRLFD--LMTKKNEVTWNTMISGYGLHGQGQEAL 506
Query: 226 ENFERMQKVGLKPN-----------RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDI 274
F M G+ P + +EG + F+ M+ P +KHY C++DI
Sbjct: 507 NIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDI 566
Query: 275 LERAGRLEQA 284
L RAG L++A
Sbjct: 567 LGRAGHLQRA 576
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 105/218 (48%), Gaps = 17/218 (7%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
D+ T ++ L LG Q+H++ +K G SH YV T +Y G +K S L
Sbjct: 219 LDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSAL 278
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F E + ++V +N +I GY+ + +L+LF+ + S T+++
Sbjct: 279 FREFRKPDIVAYN----------AMIHGYTSNGETELSLSLFKELMLSGARLRSS-TLVS 327
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
++P +G + IHGY K F + VS L Y+K I SA KLF+++
Sbjct: 328 LVPV---SGHLMLIYAIHGYCLKSNFLSH-ASVSTALTTVYSKLNEIESARKLFDESP-- 381
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
K+L SW +ISG+ +G+ ++A+ F MQK PN
Sbjct: 382 EKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPN 419
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 95/208 (45%), Gaps = 27/208 (12%)
Query: 16 SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL 75
SP P T + ++ C L +LG +H + F+S +YV+TAL MY G +
Sbjct: 417 SPNP-----VTITCILSACAQLGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSI 471
Query: 76 KDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS 135
++ +LFD + ++N VTWN +I+ GY + EAL +F M T P+
Sbjct: 472 AEARRLFDLMTKKNEVTWNTMIS----------GYGLHGQGQEALNIFYEMLNSGIT-PT 520
Query: 136 EITILAVLPAIWKNGEVRNCQ-----LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190
+T L VL A G V+ +IH YG + + C++D + G +
Sbjct: 521 PVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHY-----ACMVDILGRAGHLQR 575
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMH 218
A + E S++ + V W T++ +H
Sbjct: 576 ALQFIEAMSIEPGSSV-WETLLGACRIH 602
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 104/227 (45%), Gaps = 15/227 (6%)
Query: 11 YIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV 70
++ + L P +S TY+F I G +H G S + + + + MY
Sbjct: 108 HLRKSTDLKP--NSSTYAFAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYF 165
Query: 71 SLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE 130
++D+ K+FD +PE++ + WN +I+ GY + E++ +FR +
Sbjct: 166 KFWRVEDARKVFDRMPEKDTILWNTMIS----------GYRKNEMYVESIQVFRDLINES 215
Query: 131 YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190
T T+L +LPA+ + E+R IH K G + D +V I Y+KCG I
Sbjct: 216 CTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHD-YVLTGFISLYSKCGKIKM 274
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
S LF + + ++V++ +I G+ +G + ++ F+ + G +
Sbjct: 275 GSALFRE--FRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAR 319
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 84/187 (44%), Gaps = 13/187 (6%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
Q HA GF++ + + T L LG + + +F + ++ +NV++
Sbjct: 38 QTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMR------ 91
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
G+S + +L++F + +P+ T + A + R ++IHG
Sbjct: 92 ----GFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVV 147
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
G ++ ++ + + ++ Y K + A K+F+ + K+ + W T+ISG+ + M E+
Sbjct: 148 DGCDS-ELLLGSNIVKMYFKFWRVEDARKVFD--RMPEKDTILWNTMISGYRKNEMYVES 204
Query: 225 VENFERM 231
++ F +
Sbjct: 205 IQVFRDL 211
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 147 bits (372), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 86/294 (29%), Positives = 146/294 (49%), Gaps = 14/294 (4%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L +S T + ++ CV + +H K G +V L DMY LG + + +
Sbjct: 402 LANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMR 461
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F ++ +R+LVTWN +ITG V D +++ + A+ +P+ IT++
Sbjct: 462 IFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLM 521
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+LP+ + + IH Y K A D+ V + L+D YAKCGC+ + K+F+ +
Sbjct: 522 TILPSCAALSALAKGKEIHAYAIKNNL-ATDVAVGSALVDMYAKCGCLQMSRKVFD--QI 578
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGL 249
+KN+++W II + MHG G+EA++ M G+KPN I +EGL
Sbjct: 579 PQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEGL 638
Query: 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+ F M + V P HY C++D+L RAGR+++A ++ + +P W +
Sbjct: 639 RIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSS 692
Score = 98.6 bits (244), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 137/302 (45%), Gaps = 39/302 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVSLGFLKDSSKL 81
D FT S ++ C L G +LHA K G + +V +AL DMY + + ++
Sbjct: 301 DEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRV 360
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
FD + +R + WN +I G YS+ EAL LF M + T+
Sbjct: 361 FDGMFDRKIGLWNAMIAG----------YSQNEHDKEALLLFIGMEESAGLLANSTTMAG 410
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
V+PA ++G + IHG+ KRG + D V N L+D Y++ G I A ++F ++
Sbjct: 411 VVPACVRSGAFSRKEAIHGFVVKRGLDR-DRFVQNTLMDMYSRLGKIDIAMRIF--GKME 467
Query: 202 RKNLVSWTTIISGFAMHGMGKEA------VENFER-----MQKVGLKPNR---------- 240
++LV+W T+I+G+ ++A ++N ER +V LKPN
Sbjct: 468 DRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSC 527
Query: 241 -SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVV 299
+ +G + ++ + D+ L+D+ + G L+ + +V IP + NV+
Sbjct: 528 AALSALAKGKEIHAYAIKN-NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQK--NVI 584
Query: 300 VW 301
W
Sbjct: 585 TW 586
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 105/226 (46%), Gaps = 18/226 (7%)
Query: 24 SFTYSFLIRTCVTLSYPN---LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
SFT ++ C L P +G Q+HA + G + +NT + MY LG L S
Sbjct: 199 SFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVA-MYGKLGKLASSKV 257
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
L R+LVTWN +++ L + ++ EAL R M E EP E TI
Sbjct: 258 LLGSFGGRDLVTWNTVLSSLCQNEQLL----------EALEYLREMV-LEGVEPDEFTIS 306
Query: 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+VLPA +R + +H Y K G + V + L+D Y C + S ++F D
Sbjct: 307 SVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVF-DGMF 365
Query: 201 DRKNLVSWTTIISGFAMHGMGKEAVENFERMQK-VGLKPNRSWRIG 245
DRK + W +I+G++ + KEA+ F M++ GL N + G
Sbjct: 366 DRK-IGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAG 410
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 118/276 (42%), Gaps = 45/276 (16%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+S T ++ +C LS G ++HA K + V V +AL DMY G L+ S K+F
Sbjct: 516 NSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVF 575
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D++P++N++TWNVII Y EA+ L R M + +P+E+T ++V
Sbjct: 576 DQIPQKNVITWNVIIM----------AYGMHGNGQEAIDLLRMMMV-QGVKPNEVTFISV 624
Query: 143 LPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
A +G V ++ + G H + C++D + G I A +L D
Sbjct: 625 FAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYA-CVVDLLGRAGRIKEAYQLMNMMPRD 683
Query: 202 RKNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEE 258
+W++++ +H +G+ A +N + L+PN +
Sbjct: 684 FNKAGAWSSLLGASRIHNNLEIGEIAAQNL-----IQLEPNVA----------------- 721
Query: 259 CEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294
HY L +I AG ++A EV + Q
Sbjct: 722 -------SHYVLLANIYSSAGLWDKATEVRRNMKEQ 750
Score = 78.2 bits (191), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 104/226 (46%), Gaps = 29/226 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQ-SHVYVNTALGDMYVSLGFLKDSSKL 81
D++ + L++ L LG Q+HA K G+ V V L ++Y G K+
Sbjct: 96 DNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKV 155
Query: 82 FDELPERNLVTWNVIITGLV---KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
FD + ERN V+WN +I+ L KW AL FR M E EPS T
Sbjct: 156 FDRISERNQVSWNSLISSLCSFEKW-------------EMALEAFRCMLD-ENVEPSSFT 201
Query: 139 ILAVLPAI----WKNGEVRNCQLIHGYGEKRG-FNAFDIHVSNCLIDTYAKCGCIFSASK 193
+++V+ A G + Q +H YG ++G N+F I N L+ Y K G + S+
Sbjct: 202 LVSVVTACSNLPMPEGLMMGKQ-VHAYGLRKGELNSFII---NTLVAMYGKLGKLASSKV 257
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
L S ++LV+W T++S + EA+E M G++P+
Sbjct: 258 LL--GSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPD 301
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 3/137 (2%)
Query: 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYG 162
W ++ R N EA+ + M +P A+L A+ ++ + IH +
Sbjct: 65 WIDLLRSKVRSNLLREAVLTYVDMIVLG-IKPDNYAFPALLKAVADLQDMELGKQIHAHV 123
Query: 163 EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222
K G+ + V+N L++ Y KCG + K+F+ S +N VSW ++IS +
Sbjct: 124 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRIS--ERNQVSWNSLISSLCSFEKWE 181
Query: 223 EAVENFERMQKVGLKPN 239
A+E F M ++P+
Sbjct: 182 MALEAFRCMLDENVEPS 198
>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300
OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2
Length = 548
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 107/349 (30%), Positives = 166/349 (47%), Gaps = 74/349 (21%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTAL-------GDMYVSLGFL 75
D +T++F+++ C L + + G H + GF + YV AL GD+ ++
Sbjct: 111 DRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFVLNEYVKNALILFHANCGDLGIASELF 170
Query: 76 KDSSK------------------------LFDELPERNLVTWNVIITGLVK--------- 102
DS+K LFDE+P ++ V WNV+ITG +K
Sbjct: 171 DDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEMPYKDQVAWNVMITGCLKCKEMDSARE 230
Query: 103 ------------WTGIIDGYSRMNRSNEALALFRRMA-ACEYTEPSEITILAVLPAIWKN 149
W +I GY EAL +F+ M A E+ P +TIL++L A
Sbjct: 231 LFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFKEMRDAGEH--PDVVTILSLLSACAVL 288
Query: 150 GEVRNCQLIHGYGEKRGFNAFDIHVS----NCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
G++ + +H Y + + I+V N LID YAKCG I A ++F V ++L
Sbjct: 289 GDLETGKRLHIYILETASVSSSIYVGTPIWNALIDMYAKCGSIDRAIEVFR--GVKDRDL 346
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDK 254
+W T+I G A+H + ++E FE MQ++ + PN IG +EG K+F
Sbjct: 347 STWNTLIVGLALH-HAEGSIEMFEEMQRLKVWPNEVTFIGVILACSHSGRVDEGRKYFSL 405
Query: 255 MVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
M + + P+IKHYGC++D+L RAG+LE+A + + N +VWRT
Sbjct: 406 MRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMKIE-PNAIVWRT 453
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 22/192 (11%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSL-----GFLKDSSKLFDELPERNLVTWNVIITG 99
Q+HA G S++ V +G++ S G LK + KLFDE+P+ ++ N
Sbjct: 30 QIHASMVVNGLMSNLSV---VGELIYSASLSVPGALKYAHKLFDEIPKPDVSICN----- 81
Query: 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159
++ G ++ + + ++L+ M P T VL A K N H
Sbjct: 82 -----HVLRGSAQSMKPEKTVSLYTEMEK-RGVSPDRYTFTFVLKACSKLEWRSNGFAFH 135
Query: 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
G + GF + +V N LI +A CG + AS+LF+D++ K V+W+++ SG+A G
Sbjct: 136 GKVVRHGF-VLNEYVKNALILFHANCGDLGIASELFDDSAKAHK--VAWSSMTSGYAKRG 192
Query: 220 MGKEAVENFERM 231
EA+ F+ M
Sbjct: 193 KIDEAMRLFDEM 204
>sp|Q9SN85|PP267_ARATH Pentatricopeptide repeat-containing protein At3g47530
OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1
Length = 591
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/319 (30%), Positives = 162/319 (50%), Gaps = 39/319 (12%)
Query: 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY 60
F +++ L++ +S P PL SF I++ L G Q+H GF S
Sbjct: 97 FRLFRSLRR---NSSLPANPLSSSFALKCCIKSGDLLG----GLQIHGKIFSDGFLSDSL 149
Query: 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120
+ T L D+Y + D+ K+FDE+P+R+ V+WNV+ + Y R R+ + L
Sbjct: 150 LMTTLMDLYSTCENSTDACKVFDEIPKRDTVSWNVLFSC----------YLRNKRTRDVL 199
Query: 121 ALFRRMA----ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN 176
LF +M C +P +T L L A G + + +H + ++ G + +++SN
Sbjct: 200 VLFDKMKNDVDGC--VKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGA-LNLSN 256
Query: 177 CLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
L+ Y++CG + A ++F + +N+VSWT +ISG AM+G GKEA+E F M K G+
Sbjct: 257 TLVSMYSRCGSMDKAYQVF--YGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGI 314
Query: 237 KPNRSWRIG-----------EEGLKFFDKMVE-ECEVLPDIKHYGCLIDILERAGRLEQA 284
P G EG+ FFD+M E ++ P++ HYGC++D+L RA L++A
Sbjct: 315 SPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKA 374
Query: 285 EEVASGIPSQITNVVVWRT 303
+ + + + +WRT
Sbjct: 375 YSLIKSMEMK-PDSTIWRT 392
>sp|Q9LYU9|PP378_ARATH Pentatricopeptide repeat-containing protein At5g13270,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2
SV=1
Length = 752
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 143/282 (50%), Gaps = 24/282 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
+DSF +S +++ C +L NLG Q+HA +K+G +S V V T L D Y+ + + +
Sbjct: 283 WDSFVFSVVLKACASLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRA 342
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
F E+ E N V+W+ II+ GY +M++ EA+ F+ + + + + T +
Sbjct: 343 FQEIREPNDVSWSAIIS----------GYCQMSQFEEAVKTFKSLRSKNASILNSFTYTS 392
Query: 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201
+ A + +H KR + + LI Y+KCGC+ A+++FE S+D
Sbjct: 393 IFQACSVLADCNIGGQVHADAIKRSLIGSQ-YGESALITMYSKCGCLDDANEVFE--SMD 449
Query: 202 RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLK 250
++V+WT ISG A +G EA+ FE+M G+KPN I E+G
Sbjct: 450 NPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKH 509
Query: 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
D M+ + V P I HY C+IDI R+G L++A + +P
Sbjct: 510 CLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALKFMKNMP 551
Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 79/307 (25%), Positives = 133/307 (43%), Gaps = 47/307 (15%)
Query: 19 PPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
PP S Y+ L+++ V + G Q+HA + G S+ + T + +MYV G+L +
Sbjct: 182 PP---SSMYTTLLKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGA 238
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
++FD++ + V TG++ GY++ R+ +AL LF + E E
Sbjct: 239 KRVFDQMA----------VKKPVACTGLMVGYTQAGRARDALKLFVDLVT-EGVEWDSFV 287
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
VL A E+ + IH K G + ++ V L+D Y KC SA + F++
Sbjct: 288 FSVVLKACASLEELNLGKQIHACVAKLGLES-EVSVGTPLVDFYIKCSSFESACRAFQE- 345
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEE 258
+ N VSW+ IISG+ +EAV+ F+ ++ S+ + + +
Sbjct: 346 -IREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFT--------YTSIFQA 396
Query: 259 CEVLPDIK-----------------HYG--CLIDILERAGRLEQAEEVASGIPSQITNVV 299
C VL D YG LI + + G L+ A EV + + ++V
Sbjct: 397 CSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMDN--PDIV 454
Query: 300 VWRTGFL 306
W T F+
Sbjct: 455 AW-TAFI 460
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 99/203 (48%), Gaps = 22/203 (10%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
+ +SFTY+ + + C L+ N+G Q+HA K Y +AL MY G L D+++
Sbjct: 384 ILNSFTYTSIFQACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANE 443
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+F+ + ++V WT I G++ ++EAL LF +M +C +P+ +T +
Sbjct: 444 VFESMDNPDIVA----------WTAFISGHAYYGNASEALRLFEKMVSCG-MKPNSVTFI 492
Query: 141 AVLPAIWKNGEV---RNC--QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195
AVL A G V ++C ++ Y + +D C+ID YA+ G + A K
Sbjct: 493 AVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYD-----CMIDIYARSGLLDEALKFM 547
Query: 196 EDTSVDRKNLVSWTTIISGFAMH 218
++ + + +SW +SG H
Sbjct: 548 KNMPFE-PDAMSWKCFLSGCWTH 569
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/210 (26%), Positives = 98/210 (46%), Gaps = 24/210 (11%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSSKLF 82
S++Y L C L + G LH ++G ++ V + + MY L+D+ KLF
Sbjct: 83 SYSYQCLFEACRELRSLSHGRLLHDRM-RMGIENPSVLLQNCVLQMYCECRSLEDADKLF 141
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI--TIL 140
DE+ E N V+ +I+ + GI+D +A+ LF M A PS + T+L
Sbjct: 142 DEMSELNAVSRTTMISAYAE-QGILD---------KAVGLFSGMLASGDKPPSSMYTTLL 191
Query: 141 AVL--PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
L P G + IH + + G + + + +++ Y KCG + A ++F+
Sbjct: 192 KSLVNPRALDFG-----RQIHAHVIRAGLCS-NTSIETGIVNMYVKCGWLVGAKRVFDQM 245
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENF 228
+V K V+ T ++ G+ G ++A++ F
Sbjct: 246 AV--KKPVACTGLMVGYTQAGRARDALKLF 273
>sp|P0C8Q7|PP369_ARATH Pentatricopeptide repeat-containing protein At5g08305
OS=Arabidopsis thaliana GN=PCMP-E105 PE=2 SV=1
Length = 534
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 149/314 (47%), Gaps = 46/314 (14%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L D TY FL+++ LS LG LH K G + +++ L MY S + K
Sbjct: 105 LPDHMTYPFLMKSSSRLSNRKLGGSLHCSVVKSGLEWDLFICNTLIHMYGSFRDQASARK 164
Query: 81 LFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEA 119
LFDE+P +NLVTWN I+ +V W+ +IDGY + N+A
Sbjct: 165 LFDEMPHKNLVTWNSILDAYAKSGDVVSARLVFDEMSERDVVTWSSMIDGYVKRGEYNKA 224
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIH------ 173
L +F +M ++ +E+T+++V+ A G + + +H Y D+H
Sbjct: 225 LEIFDQMMRMGSSKANEVTMVSVICACAHLGALNRGKTVHRY-------ILDVHLPLTVI 277
Query: 174 VSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233
+ LID YAKCG I A +F SV + + W II G A HG +E+++ F +M++
Sbjct: 278 LQTSLIDMYAKCGSIGDAWSVFYRASVKETDALMWNAIIGGLASHGFIRESLQLFHKMRE 337
Query: 234 VGLKPNR-----------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLE 282
+ P+ + +E FF K ++E P +HY C++D+L RAG ++
Sbjct: 338 SKIDPDEITFLCLLAACSHGGLVKEAWHFF-KSLKESGAEPKSEHYACMVDVLSRAGLVK 396
Query: 283 QAEEVASGIPSQIT 296
A + S +P + T
Sbjct: 397 DAHDFISEMPIKPT 410
>sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3
SV=1
Length = 822
Score = 146 bits (368), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 90/292 (30%), Positives = 150/292 (51%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT S ++ C LG QLH + KVGF +YV+ AL D+Y + + KLF
Sbjct: 347 NEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLF 406
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
EL +N V+WN +I GY + +A ++FR A +E+T +
Sbjct: 407 AELSSKNEVSWNTVIV----------GYENLGEGGKAFSMFRE-ALRNQVSVTEVTFSSA 455
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + +HG K NA + VSN LID YAKCG I A +F + ++
Sbjct: 456 LGACASLASMDLGVQVHGLAIKTN-NAKKVAVSNSLIDMYAKCGDIKFAQSVFNE--MET 512
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
++ SW +ISG++ HG+G++A+ + M+ KPN +G ++G +
Sbjct: 513 IDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQEC 572
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ M+ + + P ++HY C++ +L R+G+L++A ++ GIP + +V++WR
Sbjct: 573 FESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPYE-PSVMIWRA 623
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 135/322 (41%), Gaps = 36/322 (11%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
+ S + P DS Y ++R C+ + P +H K G ++ L + YV
Sbjct: 37 LESSDSIIPGLDSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVK 96
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY 131
GF KD+ LFDE+PERN V++ + G I YSR++R L
Sbjct: 97 AGFDKDALNLFDEMPERNNVSFVTLAQGYA-CQDPIGLYSRLHREGHEL----------- 144
Query: 132 TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF--NAFDIHVSNCLIDTYAKCGCIF 189
P T L E+ C +H K G+ NAF V LI+ Y+ CG +
Sbjct: 145 -NPHVFTSFLKLFVSLDKAEI--CPWLHSPIVKLGYDSNAF---VGAALINAYSVCGSVD 198
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR----SWRIG 245
SA +FE + K++V W I+S + +G +++++ M+ G PN +
Sbjct: 199 SARTVFE--GILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKA 256
Query: 246 EEGLKFFD-------KMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNV 298
GL FD ++++ C VL G L+ + + G + A +V + +P +V
Sbjct: 257 SIGLGAFDFAKGVHGQILKTCYVLDPRVGVG-LLQLYTQLGDMSDAFKVFNEMPK--NDV 313
Query: 299 VVWRTGFLRLLINSYFFSPITL 320
V W R N + + L
Sbjct: 314 VPWSFMIARFCQNGFCNEAVDL 335
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 130/305 (42%), Gaps = 31/305 (10%)
Query: 9 QIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDM 68
+++ H P +F SF F V+L + LH+ K+G+ S+ +V AL +
Sbjct: 136 RLHREGHELNPHVFTSFLKLF-----VSLDKAEICPWLHSPIVKLGYDSNAFVGAALINA 190
Query: 69 YVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128
Y G + + +F+ ++ +V W GI+ Y ++L L M
Sbjct: 191 YSVCGSVDSARTVFE----------GILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRM 240
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
+ P+ T L A G + +HG K + D V L+ Y + G +
Sbjct: 241 AGFM-PNNYTFDTALKASIGLGAFDFAKGVHGQILKTCY-VLDPRVGVGLLQLYTQLGDM 298
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-------- 240
A K+F + + + ++V W+ +I+ F +G EAV+ F RM++ + PN
Sbjct: 299 SDAFKVFNE--MPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILN 356
Query: 241 SWRIGE-EGL-KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNV 298
IG+ GL + +V + DI LID+ + +++ A ++ + + S+ N
Sbjct: 357 GCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSK--NE 414
Query: 299 VVWRT 303
V W T
Sbjct: 415 VSWNT 419
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 90/324 (27%), Positives = 160/324 (49%), Gaps = 39/324 (12%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
+ S + L P D++T +FL++ C L G Q+H + + GF + +V T L +Y
Sbjct: 98 LSSGNDLKP--DNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAE 155
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITGLVK---------------------WTGIIDGY 110
LG L K+F+ +P + V ++T + W +I GY
Sbjct: 156 LGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGY 215
Query: 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF 170
+++ S EAL +F M E + + + +++VL A + G + + H Y E+
Sbjct: 216 AQVGESREALNVFHLMQL-EGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIK-I 273
Query: 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230
+ ++ L+D YAKCG + A ++F ++ KN+ +W++ ++G AM+G G++ +E F
Sbjct: 274 TVRLATTLVDLYAKCGDMEKAMEVF--WGMEEKNVYTWSSALNGLAMNGFGEKCLELFSL 331
Query: 231 MQKVGLKPNRSWRIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
M++ G+ PN + +EG + FD M E + P ++HYGCL+D+ RAG
Sbjct: 332 MKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAG 391
Query: 280 RLEQAEEVASGIPSQITNVVVWRT 303
RLE A + +P + + VW +
Sbjct: 392 RLEDAVSIIQQMPMK-PHAAVWSS 414
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 155/310 (50%), Gaps = 37/310 (11%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
S T ++ C + +L ++H S+ + + + AL + Y + G + + ++F
Sbjct: 236 SVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFR 295
Query: 84 ELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALAL 122
+ R++++W I+ G V+ WT +IDGY R NE+L +
Sbjct: 296 SMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEI 355
Query: 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182
FR M + P E T+++VL A G + + I Y +K D+ V N LID Y
Sbjct: 356 FREMQSAGMI-PDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKN-DVVVGNALIDMY 413
Query: 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW 242
KCGC A K+F D +D+++ +WT ++ G A +G G+EA++ F +MQ + ++P+
Sbjct: 414 FKCGCSEKAQKVFHD--MDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDIT 471
Query: 243 RIG-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291
+G ++ KFF KM + + P + HYGC++D+L RAG +++A E+ +
Sbjct: 472 YLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKM 531
Query: 292 PSQITNVVVW 301
P N +VW
Sbjct: 532 PMN-PNSIVW 540
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 146/319 (45%), Gaps = 40/319 (12%)
Query: 23 DSFTYSFLI----RTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS 78
DS T+ FL+ R L+ G +LH K G S++YV AL MY G + +
Sbjct: 133 DSHTFPFLLNGLKRDGGALA---CGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMA 189
Query: 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138
+FD + ++ +WN++I+ GY+RM E++ L M P+ +T
Sbjct: 190 RGVFDRRCKEDVFSWNLMIS----------GYNRMKEYEESIELLVEMER-NLVSPTSVT 238
Query: 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198
+L VL A K + C+ +H Y + + + N L++ YA CG + A ++F
Sbjct: 239 LLLVLSACSKVKDKDLCKRVHEYVSECKTEP-SLRLENALVNAYAACGEMDIAVRIFR-- 295
Query: 199 SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG----------EEG 248
S+ ++++SWT+I+ G+ G K A F++M ++ SW I E
Sbjct: 296 SMKARDVISWTSIVKGYVERGNLKLARTYFDQMP---VRDRISWTIMIDGYLRAGCFNES 352
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI-PSQITNVVVWRTGFLR 307
L+ F +M + ++PD ++ G LE E + + I ++I N VV
Sbjct: 353 LEIFREM-QSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNA--- 408
Query: 308 LLINSYFFSPITLNSQRLF 326
LI+ YF + +Q++F
Sbjct: 409 -LIDMYFKCGCSEKAQKVF 426
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 113/242 (46%), Gaps = 27/242 (11%)
Query: 73 GFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT 132
G + + KLF ++PE ++V WN +I G+S+++ E + L+ M E
Sbjct: 82 GHVSYAYKLFVKIPEPDVVVWN----------NMIKGWSKVDCDGEGVRLYLNMLK-EGV 130
Query: 133 EPSEITILAVLPAIWKNGEVRNC-QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191
P T +L + ++G C + +H + K G + +++V N L+ Y+ CG + A
Sbjct: 131 TPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGS-NLYVQNALVKMYSLCGLMDMA 189
Query: 192 SKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP---------NRSW 242
+F+ ++++ SW +ISG+ +E++E M++ + P +
Sbjct: 190 RGVFDRRC--KEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACS 247
Query: 243 RIGEEGL-KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVW 301
++ ++ L K + V EC+ P ++ L++ G ++ A + + ++ +V+ W
Sbjct: 248 KVKDKDLCKRVHEYVSECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKAR--DVISW 305
Query: 302 RT 303
+
Sbjct: 306 TS 307
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 86/199 (43%), Gaps = 18/199 (9%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT ++ C L +G + K ++ V V AL DMY G + + K+F
Sbjct: 367 DEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVF 426
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
++ +R+ TW ++ GL + + EA+ +F +M +P +IT L V
Sbjct: 427 HDMDQRDKFTWTAMVVGL----------ANNGQGQEAIKVFFQMQDMS-IQPDDITYLGV 475
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFD---IHVSNCLIDTYAKCGCIFSASKLFEDTS 199
L A +G V + + + R + + +H C++D + G + A ++
Sbjct: 476 LSACNHSGMVDQARKF--FAKMRSDHRIEPSLVHYG-CMVDMLGRAGLVKEAYEILRKMP 532
Query: 200 VDRKNLVSWTTIISGFAMH 218
++ ++V W ++ +H
Sbjct: 533 MNPNSIV-WGALLGASRLH 550
>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070
OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
Length = 741
Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/271 (33%), Positives = 143/271 (52%), Gaps = 29/271 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T ++ C LG Q+H GF S++ + AL D+Y G L+ + LF
Sbjct: 265 DESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLF 324
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ LP +++++WN +I GY+ MN EAL LF+ M T P+++T+L++
Sbjct: 325 ERLPYKDVISWNTLI----------GGYTHMNLYKEALLLFQEMLRSGET-PNDVTMLSI 373
Query: 143 LPAIWKNGEVRNCQLIHGYGEKR---GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
LPA G + + IH Y +KR NA + S LID YAKCG I +A ++F S
Sbjct: 374 LPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTS--LIDMYAKCGDIEAAHQVF--NS 429
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
+ K+L SW +I GFAMHG + + F RM+K+G++P+ +G + G
Sbjct: 430 ILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLG 489
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
F M ++ ++ P ++HYGC+ID+L +G
Sbjct: 490 RHIFRTMTQDYKMTPKLEHYGCMIDLLGHSG 520
Score = 126 bits (317), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 149/306 (48%), Gaps = 41/306 (13%)
Query: 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80
L +S+T+ F++++C G Q+H K+G +YV+T+L MYV G L+D+ K
Sbjct: 131 LPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHK 190
Query: 81 LFDELPERNLVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEA 119
+FD+ P R++V++ +I G +V W +I GY+ EA
Sbjct: 191 VFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEA 250
Query: 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179
L LF+ M P E T++ V+ A ++G + + +H + + GF + ++ + N LI
Sbjct: 251 LELFKDMMKTN-VRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGS-NLKIVNALI 308
Query: 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
D Y+KCG + +A LFE + K+++SW T+I G+ + KEA+ F+ M + G PN
Sbjct: 309 DLYSKCGELETACGLFE--RLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPN 366
Query: 240 R--------------SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAE 285
+ IG + DK ++ ++ LID+ + G +E A
Sbjct: 367 DVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLR--TSLIDMYAKCGDIEAAH 424
Query: 286 EVASGI 291
+V + I
Sbjct: 425 QVFNSI 430
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 83/345 (24%), Positives = 141/345 (40%), Gaps = 66/345 (19%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV-SLGF--LKDSSKLFDELP 86
L+ C TL + +HA K+G + Y + L + + S F L + +F +
Sbjct: 39 LLHNCKTLQSLRI---IHAQMIKIGLHNTNYALSKLIEFCILSPHFEGLPYAISVFKTIQ 95
Query: 87 ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI 146
E NL+ WN + G ++ + AL L+ M + P+ T VL +
Sbjct: 96 EPNLLIWNTMFRG----------HALSSDPVSALKLYVCMISLGLL-PNSYTFPFVLKSC 144
Query: 147 WKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT-------- 198
K+ + Q IHG+ K G + D++V LI Y + G + A K+F+ +
Sbjct: 145 AKSKAFKEGQQIHGHVLKLGCD-LDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSY 203
Query: 199 ---------------------SVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
+ K++VSW +ISG+A G KEA+E F+ M K ++
Sbjct: 204 TALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR 263
Query: 238 PNRSWRI------GEEGLKFFDKMV----EECEVLPDIKHYGCLIDILERAGRLEQAEEV 287
P+ S + + G + V ++ ++K LID+ + G LE A +
Sbjct: 264 PDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGL 323
Query: 288 ASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAAL 332
+P + +V+ W T LI Y + + L + L F L
Sbjct: 324 FERLPYK--DVISWNT-----LIGGY--THMNLYKEALLLFQEML 359
>sp|Q9SII7|PP159_ARATH Pentatricopeptide repeat-containing protein At2g17210
OS=Arabidopsis thaliana GN=PCMP-E77 PE=2 SV=2
Length = 736
Score = 145 bits (365), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 88/315 (27%), Positives = 156/315 (49%), Gaps = 36/315 (11%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D T L+R C P +H V + G++S+ ++L D Y S + D+ +
Sbjct: 348 DEVTVVSLLRVCKFFEQPLPCKSIHGVIIRRGYESNEVALSSLIDAYTSCSLVDDAGTVL 407
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D + +++V+ + +I+GL + RS+EA+++F M P+ IT++++
Sbjct: 408 DSMTYKDVVSCSTMISGL----------AHAGRSDEAISIFCHM----RDTPNAITVISL 453
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L A + ++R + HG +R DI V ++D YAKCG I A + F+ +
Sbjct: 454 LNACSVSADLRTSKWAHGIAIRRSLAINDISVGTSIVDAYAKCGAIEMARRTFD--QITE 511
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
KN++SWT IIS +A++G+ +A+ F+ M++ G PN + ++GL
Sbjct: 512 KNIISWTVIISAYAINGLPDKALALFDEMKQKGYTPNAVTYLAALSACNHGGLVKKGLMI 571
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQI-TNVVVW-------RT 303
F MVEE + P ++HY C++D+L RAG ++ A E+ +P + W R
Sbjct: 572 FKSMVEE-DHKPSLQHYSCIVDMLSRAGEIDTAVELIKNLPEDVKAGASAWGAILSGCRN 630
Query: 304 GFLRLLINSYFFSPI 318
F +L+I S + +
Sbjct: 631 RFKKLIITSEVVAEV 645
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 108/206 (52%), Gaps = 15/206 (7%)
Query: 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85
T +I C +L + G ++H + GF V ++ MY L + KLFDE+
Sbjct: 150 TLVLVIHACRSLWFD--GEKIHGYVIRSGFCGISSVQNSILCMYADSDSLS-ARKLFDEM 206
Query: 86 PERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145
ER++++W+V+I V+ + G L LF+ M TEP +T+ +VL A
Sbjct: 207 SERDVISWSVVIRSYVQSKEPVVG----------LKLFKEMVHEAKTEPDCVTVTSVLKA 256
Query: 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
++ + +HG+ +RGF+ D+ V N LID Y+K + SA ++F++T+ +N+
Sbjct: 257 CTVMEDIDVGRSVHGFSIRRGFDLADVFVCNSLIDMYSKGFDVDSAFRVFDETTC--RNI 314
Query: 206 VSWTTIISGFAMHGMGKEAVENFERM 231
VSW +I++GF + EA+E F M
Sbjct: 315 VSWNSILAGFVHNQRYDEALEMFHLM 340
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 72/264 (27%), Positives = 118/264 (44%), Gaps = 54/264 (20%)
Query: 4 YKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNT 63
Y ++Q+ + + P F + + + C LS+ G + A K GF+S V V
Sbjct: 34 YSEIQRAGVQFNDP-------FVFPIVFKACAKLSWLFQGRCIQASLLKRGFESFVSVGN 86
Query: 64 ALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALF 123
++ D Y+ G L + FD + R+ V+WNVI+ GL+ + G+ E L F
Sbjct: 87 SIADFYMKCGDLCSGLREFDCMNSRDSVSWNVIVFGLLDY-----GF-----EEEGLWWF 136
Query: 124 RRMAACEYTEPSEITILAVLPA---IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
++ + EP+ T++ V+ A +W +GE IHGY + GF V N ++
Sbjct: 137 SKLRVWGF-EPNTSTLVLVIHACRSLWFDGE-----KIHGYVIRSGFCGIS-SVQNSILC 189
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
YA + SA KLF++ S ++++SW+ +I + KE V
Sbjct: 190 MYADSDSL-SARKLFDEMS--ERDVISWSVVIRSYV---QSKEPV--------------- 228
Query: 241 SWRIGEEGLKFFDKMVEECEVLPD 264
GLK F +MV E + PD
Sbjct: 229 ------VGLKLFKEMVHEAKTEPD 246
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 65/140 (46%), Gaps = 16/140 (11%)
Query: 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161
KW ++ GYS + R A ++ +P I V A K + + I
Sbjct: 26 KWREVVSGYSEIQR-----------AGVQFNDPFVFPI--VFKACAKLSWLFQGRCIQAS 72
Query: 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG 221
KRGF +F + V N + D Y KCG + S + F+ ++ ++ VSW I+ G +G
Sbjct: 73 LLKRGFESF-VSVGNSIADFYMKCGDLCSGLREFD--CMNSRDSVSWNVIVFGLLDYGFE 129
Query: 222 KEAVENFERMQKVGLKPNRS 241
+E + F +++ G +PN S
Sbjct: 130 EEGLWWFSKLRVWGFEPNTS 149
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 145 bits (365), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 153/295 (51%), Gaps = 32/295 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
DSFT S ++ G ++H + G S VY+ ++L DMY ++DS ++F
Sbjct: 241 DSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVF 300
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
L R+ ++WN ++ G Y + R NEAL LFR+M + +P + +V
Sbjct: 301 SRLYCRDGISWNSLVAG----------YVQNGRYNEALRLFRQMVTAK-VKPGAVAFSSV 349
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
+PA + + +HGY + GF + +I +++ L+D Y+KCG I +A K+F DR
Sbjct: 350 IPACAHLATLHLGKQLHGYVLRGGFGS-NIFIASALVDMYSKCGNIKAARKIF-----DR 403
Query: 203 KNL---VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEG 248
N+ VSWT II G A+HG G EAV FE M++ G+KPN+ + +E
Sbjct: 404 MNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEA 463
Query: 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
+F+ M + + +++HY + D+L RAG+LE+A S + + T VW T
Sbjct: 464 WGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTG-SVWST 517
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 111/242 (45%), Gaps = 30/242 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL---GFLKDSS 79
D + ++++C + G +H ++G +Y AL +MY L G
Sbjct: 104 DHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVG 163
Query: 80 KLFDELPERNLVTWNVIITG-----------------------LVKWTGIIDGYSRMNRS 116
+FDE+P+R + + + +V + II GY++
Sbjct: 164 NVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMY 223
Query: 117 NEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN 176
+AL + R M + +P T+ +VLP + +V + IHGY ++G ++ D+++ +
Sbjct: 224 EDALRMVREMGTTDL-KPDSFTLSSVLPIFSEYVDVIKGKEIHGYVIRKGIDS-DVYIGS 281
Query: 177 CLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236
L+D YAK I + ++F + + ++ +SW ++++G+ +G EA+ F +M +
Sbjct: 282 SLVDMYAKSARIEDSERVF--SRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKV 339
Query: 237 KP 238
KP
Sbjct: 340 KP 341
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 100/215 (46%), Gaps = 21/215 (9%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
+ +S +I C L+ +LG QLH + GF S++++ +AL DMY G +K + K+FD
Sbjct: 343 AVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFD 402
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
+ NV+ V WT II G++ +EA++LF M + +P+++ +AVL
Sbjct: 403 RM--------NVLDE--VSWTAIIMGHALHGHGHEAVSLFEEMKR-QGVKPNQVAFVAVL 451
Query: 144 PAIWKNGEVRNC-QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
A G V + + G N H + + D + G + A V+
Sbjct: 452 TACSHVGLVDEAWGYFNSMTKVYGLNQELEHYA-AVADLLGRAGKLEEAYNFISKMCVEP 510
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK 237
V W+T++S ++H +N E +KV K
Sbjct: 511 TGSV-WSTLLSSCSVH-------KNLELAEKVAEK 537
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 124/306 (40%), Gaps = 61/306 (19%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
LI+ + + QLHA F + SH + + +Y +L L ++ LF L
Sbjct: 11 LIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVI-SIYTNLKLLHEALLLFKTLKSPP 69
Query: 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149
++ W +I ++ + ++ALA F M A P +VL +
Sbjct: 70 VLAWK----------SVIRCFTDQSLFSKALASFVEMRASGRC-PDHNVFPSVLKSCTMM 118
Query: 150 GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK---CGCIFSASKLF----------- 195
++R + +HG+ + G + D++ N L++ YAK G S +F
Sbjct: 119 MDLRFGESVHGFIVRLGMDC-DLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSG 177
Query: 196 -EDTSVD-------------------RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235
ED + RK++VS+ TII+G+A GM ++A+ M
Sbjct: 178 DEDVKAETCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTD 237
Query: 236 LKPNRSWRIGEEGLKFFDKMVEECE------------VLPDIKHYGCLIDILERAGRLEQ 283
LKP+ S+ + L F + V+ + + D+ L+D+ ++ R+E
Sbjct: 238 LKPD-SFTLSSV-LPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIED 295
Query: 284 AEEVAS 289
+E V S
Sbjct: 296 SERVFS 301
>sp|Q9CA73|PP119_ARATH Putative pentatricopeptide repeat-containing protein At1g74400
OS=Arabidopsis thaliana GN=PCMP-E68 PE=3 SV=1
Length = 462
Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 158/310 (50%), Gaps = 32/310 (10%)
Query: 13 HSHSPLPPLFDSFTYSFLIRTCVTLSYPNL-GTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
H P DSF+ F I+ +L G Q+HA+ K+GF + + + T+L Y S
Sbjct: 53 HRFRQSPSFVDSFSVLFAIKVSSAQKASSLDGRQIHALVRKLGFNAVIQIQTSLVGFYSS 112
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY 131
+G + + ++FDE PE+ +V WT +I Y+ S EA+ LF+RM A E
Sbjct: 113 VGDVDYARQVFDETPEKQ---------NIVLWTAMISAYTENENSVEAIELFKRMEA-EK 162
Query: 132 TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN-AFDIHVSNCLIDTYAKCGCIFS 190
E + + L A G V+ + I+ KR A D+ + N L++ Y K G
Sbjct: 163 IELDGVIVTVALSACADLGAVQMGEEIYSRSIKRKRRLAMDLTLRNSLLNMYVKSGETEK 222
Query: 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG------LKPNRSWRI 244
A KLF+++ RK++ ++T++I G+A++G +E++E F++M+ + + PN I
Sbjct: 223 ARKLFDESM--RKDVTTYTSMIFGYALNGQAQESLELFKKMKTIDQSQDTVITPNDVTFI 280
Query: 245 G-----------EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPS 293
G EEG + F M+ + + P H+GC++D+ R+G L+ A E + +P
Sbjct: 281 GVLMACSHSGLVEEGKRHFKSMIMDYNLKPREAHFGCMVDLFCRSGHLKDAHEFINQMPI 340
Query: 294 QITNVVVWRT 303
+ N V+WRT
Sbjct: 341 K-PNTVIWRT 349
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 93/210 (44%), Gaps = 28/210 (13%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHA--VFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79
D + + C L +G ++++ + K + + +L +MYV G + +
Sbjct: 165 LDGVIVTVALSACADLGAVQMGEEIYSRSIKRKRRLAMDLTLRNSLLNMYVKSGETEKAR 224
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE-----P 134
KLFDE +++ T+ T +I GY+ ++ E+L LF++M + ++ P
Sbjct: 225 KLFDESMRKDVTTY----------TSMIFGYALNGQAQESLELFKKMKTIDQSQDTVITP 274
Query: 135 SEITILAVLPAIWKNGEVRNCQ-----LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189
+++T + VL A +G V + +I Y K F C++D + + G +
Sbjct: 275 NDVTFIGVLMACSHSGLVEEGKRHFKSMIMDYNLKPREAHF-----GCMVDLFCRSGHLK 329
Query: 190 SASKLFEDTSVDRKNLVSWTTIISGFAMHG 219
A + + + N V W T++ ++HG
Sbjct: 330 DAHEFINQMPI-KPNTVIWRTLLGACSLHG 358
>sp|Q9SZK1|PP355_ARATH Pentatricopeptide repeat-containing protein At4g38010
OS=Arabidopsis thaliana GN=PCMP-E45 PE=3 SV=1
Length = 559
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 136/264 (51%), Gaps = 25/264 (9%)
Query: 41 NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGL 100
+LG +H + K + AL DMYV L D+ ++F EL +++ V+WN +I+GL
Sbjct: 221 SLGKGIHGLILKRASLISLETGNALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGL 280
Query: 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHG 160
V RS EA+ LF M +P + +VL A G V + + +H
Sbjct: 281 V----------HCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHGRWVHE 330
Query: 161 YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGM 220
Y G +D H+ ++D YAKCG I +A ++F + KN+ +W ++ G A+HG
Sbjct: 331 YILTAGIK-WDTHIGTAIVDMYAKCGYIETALEIF--NGIRSKNVFTWNALLGGLAIHGH 387
Query: 221 GKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFDKM-VEECEVLPDIKHY 268
G E++ FE M K+G KPN + +EG ++F KM E + P ++HY
Sbjct: 388 GLESLRYFEEMVKLGFKPNLVTFLAALNACCHTGLVDEGRRYFHKMKSREYNLFPKLEHY 447
Query: 269 GCLIDILERAGRLEQAEEVASGIP 292
GC+ID+L RAG L++A E+ +P
Sbjct: 448 GCMIDLLCRAGLLDEALELVKAMP 471
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 156/332 (46%), Gaps = 42/332 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT+ + + C S G Q+H + +K+GF +YV +L Y G +++ K+F
Sbjct: 105 DMFTFPPVFKACGKFSGIREGKQIHGIVTKMGFYDDIYVQNSLVHFYGVCGESRNACKVF 164
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
E+P R++V+ WTGII G++R EAL F +M EP+ T + V
Sbjct: 165 GEMPVRDVVS----------WTGIITGFTRTGLYKEALDTFSKMD----VEPNLATYVCV 210
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + + G + + IHG KR + + N LID Y KC + A ++F + +++
Sbjct: 211 LVSSGRVGCLSLGKGIHGLILKRA-SLISLETGNALIDMYVKCEQLSDAMRVFGE--LEK 267
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQ-KVGLKPN----RSWRIGEEGLKFFD--KM 255
K+ VSW ++ISG KEA++ F MQ G+KP+ S L D +
Sbjct: 268 KDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIKPDGHILTSVLSACASLGAVDHGRW 327
Query: 256 VEECEVLPDIK---HYG-CLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLIN 311
V E + IK H G ++D+ + G +E A E+ +GI S+ NV W L I+
Sbjct: 328 VHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEIFNGIRSK--NVFTWNALLGGLAIH 385
Query: 312 SYFFSPITLNSQRLFFFPAALYALTQILGFKP 343
+ + L +F + LGFKP
Sbjct: 386 GHGL-------ESLRYFEEMVK-----LGFKP 405
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASK 193
P T V A K +R + IHG K GF DI+V N L+ Y CG +A K
Sbjct: 104 PDMFTFPPVFKACGKFSGIREGKQIHGIVTKMGFYD-DIYVQNSLVHFYGVCGESRNACK 162
Query: 194 LFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239
+F + V +++VSWT II+GF G+ KEA++ F +M ++PN
Sbjct: 163 VFGEMPV--RDVVSWTGIITGFTRTGLYKEALDTFSKMD---VEPN 203
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 85/190 (44%), Gaps = 14/190 (7%)
Query: 12 IHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71
+ + S + P D + ++ C +L + G +H G + ++ TA+ DMY
Sbjct: 296 MQTSSGIKP--DGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAK 353
Query: 72 LGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY 131
G+++ + ++F+ + +N+ TWN ++ GL I G+ E+L F M +
Sbjct: 354 CGYIETALEIFNGIRSKNVFTWNALLGGLA-----IHGHGL-----ESLRYFEEMVKLGF 403
Query: 132 TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF-DIHVSNCLIDTYAKCGCIFS 190
+P+ +T LA L A G V + + R +N F + C+ID + G +
Sbjct: 404 -KPNLVTFLAALNACCHTGLVDEGRRYFHKMKSREYNLFPKLEHYGCMIDLLCRAGLLDE 462
Query: 191 ASKLFEDTSV 200
A +L + V
Sbjct: 463 ALELVKAMPV 472
>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein At2g21090
OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
Length = 597
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/290 (30%), Positives = 144/290 (49%), Gaps = 35/290 (12%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
F+ F+++ L+ CV L Q H GF S+V ++ ++ D Y G ++ + +
Sbjct: 177 FNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRC 236
Query: 82 FDELPERNLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEAL 120
FDE+ +++ W +I+G K WT +I GY R N AL
Sbjct: 237 FDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRAL 296
Query: 121 ALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180
LFR+M A +P + T + L A +R+ + IHGY + I +S+ LID
Sbjct: 297 DLFRKMIALG-VKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISS-LID 354
Query: 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
Y+K G + ++ ++F D+ + V W T+IS A HG+G +A+ + M K ++PNR
Sbjct: 355 MYSKSGSLEASERVFRICD-DKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNR 413
Query: 241 SWRI-----------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279
+ + EEGL++F+ M + ++PD +HY CLID+L RAG
Sbjct: 414 TTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAG 463
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 144/339 (42%), Gaps = 72/339 (21%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSSKLFDELPER 88
L++ C G +H GF+ + ++ L MY+ G D+ K+FD++ R
Sbjct: 52 LLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLR 111
Query: 89 NLVTWNVIITGLVK---------------------WTGIIDGYSRMNRSNEALAL---FR 124
NL +WN +++G VK W ++ GY++ +EAL FR
Sbjct: 112 NLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFR 171
Query: 125 R-------------MAACEYTEPSEITILA---VLPAIWKNGEVRNCQLIHGYGE----- 163
R + AC + ++ A VL A + + V +C +I Y +
Sbjct: 172 RSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQME 231
Query: 164 --KRGFNAF---DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218
KR F+ DIH+ LI YAK G + +A KLF + KN VSWT +I+G+
Sbjct: 232 SAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLF--CEMPEKNPVSWTALIAGYVRQ 289
Query: 219 GMGKEAVENFERMQKVGLKPNR--------------SWRIGEEGLKFFDKMVEECEVLPD 264
G G A++ F +M +G+KP + S R G+E + + V P+
Sbjct: 290 GSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRT----NVRPN 345
Query: 265 IKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
LID+ ++G LE +E V I + V W T
Sbjct: 346 AIVISSLIDMYSKSGSLEASERVFR-ICDDKHDCVFWNT 383
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/221 (20%), Positives = 92/221 (41%), Gaps = 18/221 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT+S + +++ G ++H + + + V ++L DMY G L+ S ++F
Sbjct: 310 EQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVF 369
Query: 83 DELPER-NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILA 141
++ + V WN +I+ L ++ ++AL + M +P+ T++
Sbjct: 370 RICDDKHDCVFWNTMISAL----------AQHGLGHKALRMLDDMIKFR-VQPNRTTLVV 418
Query: 142 VLPAIWKNGEVRN-CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200
+L A +G V + + G H + CLID + GC + E+
Sbjct: 419 ILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYA-CLIDLLGRAGCFKELMRKIEEMPF 477
Query: 201 DRKNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKP 238
+ + W I+ +HG +GK+A + ++ P
Sbjct: 478 EPDKHI-WNAILGVCRIHGNEELGKKAADELIKLDPESSAP 517
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/290 (31%), Positives = 149/290 (51%), Gaps = 27/290 (9%)
Query: 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84
T+ L+R +L+ L Q+H + K G ++ +AL D+Y + LKDS +FDE
Sbjct: 455 LTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDE 514
Query: 85 LPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144
+ ++LV WN + GY + + + EAL LF + P E T ++
Sbjct: 515 MKVKDLVIWNSMFA----------GYVQQSENEEALNLFLELQLSR-ERPDEFTFANMVT 563
Query: 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204
A V+ Q H KRG + +++N L+D YAKCG A K F+ S ++
Sbjct: 564 AAGNLASVQLGQEFHCQLLKRGLEC-NPYITNALLDMYAKCGSPEDAHKAFD--SAASRD 620
Query: 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKFFD 253
+V W ++IS +A HG GK+A++ E+M G++PN +G E+GLK F+
Sbjct: 621 VVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFE 680
Query: 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
M+ + P+ +HY C++ +L RAGRL +A E+ +P++ +VWR+
Sbjct: 681 LML-RFGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTK-PAAIVWRS 728
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 102/195 (52%), Gaps = 14/195 (7%)
Query: 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104
QL + K GF VYV T L D Y+ G + + +FD LPE++ VTW +I+G VK
Sbjct: 169 QLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVK-- 226
Query: 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164
M RS +L LF ++ + P + VL A + + IH + +
Sbjct: 227 --------MGRSYVSLQLFYQLME-DNVVPDGYILSTVLSACSILPFLEGGKQIHAHILR 277
Query: 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224
G D + N LID+Y KCG + +A KLF + KN++SWTT++SG+ + + KEA
Sbjct: 278 YGLE-MDASLMNVLIDSYVKCGRVIAAHKLF--NGMPNKNIISWTTLLSGYKQNALHKEA 334
Query: 225 VENFERMQKVGLKPN 239
+E F M K GLKP+
Sbjct: 335 MELFTSMSKFGLKPD 349
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 85/308 (27%), Positives = 139/308 (45%), Gaps = 42/308 (13%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D + S ++ +C +L GTQ+HA K + YV +L DMY L D+ K+F
Sbjct: 349 DMYACSSILTSCASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVF 408
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRS---NEALALFRRMAACEYTEPSEITI 139
D ++V +N +I+GYSR+ +EAL +FR M PS +T
Sbjct: 409 DIFAAADVVLFN----------AMIEGYSRLGTQWELHEALNIFRDMRF-RLIRPSLLTF 457
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+++L A + + IHG K G N DI + LID Y+ C C+ + +F++
Sbjct: 458 VSLLRASASLTSLGLSKQIHGLMFKYGLN-LDIFAGSALIDVYSNCYCLKDSRLVFDEMK 516
Query: 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR--------------SWRIG 245
V K+LV W ++ +G+ +EA+ F +Q +P+ S ++G
Sbjct: 517 V--KDLVIWNSMFAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLG 574
Query: 246 EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGF 305
+E K EC P I + L+D+ + G E A + S+ +VV W +
Sbjct: 575 QEFHCQLLKRGLECN--PYITN--ALLDMYAKCGSPEDAHKAFDSAASR--DVVCWNS-- 626
Query: 306 LRLLINSY 313
+I+SY
Sbjct: 627 ---VISSY 631
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 108/244 (44%), Gaps = 29/244 (11%)
Query: 4 YKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNT 63
Y LQ Y + P D + S ++ C L + G Q+HA + G + +
Sbjct: 231 YVSLQLFYQLMEDNVVP--DGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMN 288
Query: 64 ALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALF 123
L D YV G + + KLF+ +P +N+++ WT ++ GY + EA+ LF
Sbjct: 289 VLIDSYVKCGRVIAAHKLFNGMPNKNIIS----------WTTLLSGYKQNALHKEAMELF 338
Query: 124 RRMAAC-----EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178
M+ Y S +T A L A+ +V H Y K D +V+N L
Sbjct: 339 TSMSKFGLKPDMYACSSILTSCASLHALGFGTQV------HAYTIKANLGN-DSYVTNSL 391
Query: 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMG---KEAVENFERMQKVG 235
ID YAKC C+ A K+F+ + ++V + +I G++ G EA+ F M+
Sbjct: 392 IDMYAKCDCLTDARKVFDIFAA--ADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRL 449
Query: 236 LKPN 239
++P+
Sbjct: 450 IRPS 453
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 113/290 (38%), Gaps = 64/290 (22%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
D FT++ ++ L+ LG + H K G + + Y+ AL DMY G +D+ K F
Sbjct: 554 DEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSPEDAHKAF 613
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
D R++V WN +I+ Y+ +AL + +M + E EP+ IT + V
Sbjct: 614 DSAASRDVVCWNSVIS----------SYANHGEGKKALQMLEKMMS-EGIEPNYITFVGV 662
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN----CLIDTYAKCGCIFSASKLFEDT 198
L A G V + G + F I C++ + G + A +L E
Sbjct: 663 LSACSHAGLVED-----GLKQFELMLRFGIEPETEHYVCMVSLLGRAGRLNKARELIEKM 717
Query: 199 SVDRKNLVSWTTIISG----------------------------------FAMHGMGKEA 224
+V W +++SG +A GM EA
Sbjct: 718 PTKPAAIV-WRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEA 776
Query: 225 VENFERMQKVGL--KPNRSW-RIGEEGLKFFDKMVEEC------EVLPDI 265
+ ERM+ G+ +P RSW I +E F K C EVL D+
Sbjct: 777 KKVRERMKVEGVVKEPGRSWIGINKEVHIFLSKDKSHCKANQIYEVLDDL 826
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 140/334 (41%), Gaps = 67/334 (20%)
Query: 37 LSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVI 96
L Y N+ +H G + Y++ L ++Y G + + K+F+++PERNLV+W+ +
Sbjct: 60 LHYQNV---VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTM 116
Query: 97 ITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQ 156
++ GI + E+L +F P+E + + + A C
Sbjct: 117 VSA-CNHHGIYE---------ESLVVFLEFWRTRKDSPNEYILSSFIQA---------CS 157
Query: 157 LIHGYGE-----------KRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205
+ G G K GF+ D++V LID Y K G I A +F+ ++ K+
Sbjct: 158 GLDGRGRWMVFQLQSFLVKSGFDR-DVYVGTLLIDFYLKDGNIDYARLVFD--ALPEKST 214
Query: 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLP-- 263
V+WTT+ISG G +++ F ++ + + P+ ++ C +LP
Sbjct: 215 VTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDG---------YILSTVLSACSILPFL 265
Query: 264 --------DIKHYG---------CLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFL 306
I YG LID + GR+ A ++ +G+P++ N++ W T
Sbjct: 266 EGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNK--NIISWTTLLS 323
Query: 307 RLLINSYFFSPITL-NSQRLFFFPAALYALTQIL 339
N+ + L S F +YA + IL
Sbjct: 324 GYKQNALHKEAMELFTSMSKFGLKPDMYACSSIL 357
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 142 bits (359), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 80/295 (27%), Positives = 148/295 (50%), Gaps = 35/295 (11%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89
++ C + G Q+ + + ++ + A+ DMY G ++D+ +LFD + E++
Sbjct: 238 VLSACAKIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKD 297
Query: 90 LVTWNVIITG---------------------LVKWTGIIDGYSRMNRSNEALALFRRMAA 128
VTW ++ G +V W +I Y + + NEAL +F +
Sbjct: 298 NVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQL 357
Query: 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188
+ + ++IT+++ L A + G + + IH Y +K G + HV++ LI Y+KCG +
Sbjct: 358 QKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIR-MNFHVTSALIHMYSKCGDL 416
Query: 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN--------- 239
+ ++F SV+++++ W+ +I G AMHG G EAV+ F +MQ+ +KPN
Sbjct: 417 EKSREVF--NSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFC 474
Query: 240 --RSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292
+ +E F +M ++P+ KHY C++D+L R+G LE+A + +P
Sbjct: 475 ACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMP 529
Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 109/198 (55%), Gaps = 20/198 (10%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ +T+ FLI+ +S +LG LH + K S V+V +L Y S G L + K+F
Sbjct: 130 NKYTFPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVF 189
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ E+++V+WN +I G V+ ++AL LF++M + E + S +T++ V
Sbjct: 190 TTIKEKDVVSWNSMINGFVQ----------KGSPDKALELFKKMES-EDVKASHVTMVGV 238
Query: 143 LPAIWKNGEVRNCQL---IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
L A K +RN + + Y E+ N ++ ++N ++D Y KCG I A +LF+ +
Sbjct: 239 LSACAK---IRNLEFGRQVCSYIEENRVNV-NLTLANAMLDMYTKCGSIEDAKRLFD--A 292
Query: 200 VDRKNLVSWTTIISGFAM 217
++ K+ V+WTT++ G+A+
Sbjct: 293 MEEKDNVTWTTMLDGYAI 310
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 128/286 (44%), Gaps = 30/286 (10%)
Query: 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV--SLGFLKDSSKLFDELPE 87
LI CV+L Q H + G S Y + L M S L+ + K+FDE+P+
Sbjct: 36 LIERCVSLRQLK---QTHGHMIRTGTFSDPYSASKLFAMAALSSFASLEYARKVFDEIPK 92
Query: 88 RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIW 147
N WN +I Y+ ++ F M + P++ T ++ A
Sbjct: 93 PNSFAWNTLIRA----------YASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAA 142
Query: 148 KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS 207
+ + Q +HG K + D+ V+N LI Y CG + SA K+F T++ K++VS
Sbjct: 143 EVSSLSLGQSLHGMAVKSAVGS-DVFVANSLIHCYFSCGDLDSACKVF--TTIKEKDVVS 199
Query: 208 WTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGE-------EGLKFFDKM---VE 257
W ++I+GF G +A+E F++M+ +K + +G L+F ++ +E
Sbjct: 200 WNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVCSYIE 259
Query: 258 ECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
E V ++ ++D+ + G +E A+ + + + + V W T
Sbjct: 260 ENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEK--DNVTWTT 303
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 142 bits (358), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 149/292 (51%), Gaps = 26/292 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82
+ FT+S + C LS P +G Q+ K G S+ V ++ M+V ++D+ + F
Sbjct: 372 NHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAF 431
Query: 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAV 142
+ L E+NLV++N +DG R +A L + E S T ++
Sbjct: 432 ESLSEKNLVSYNT----------FLDGTCRNLNFEQAFKLLSEITERELG-VSAFTFASL 480
Query: 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202
L + G +R + IH K G + + V N LI Y+KCG I +AS++F ++
Sbjct: 481 LSGVANVGSIRKGEQIHSQVVKLGLSC-NQPVCNALISMYSKCGSIDTASRVF--NFMEN 537
Query: 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIG-----------EEGLKF 251
+N++SWT++I+GFA HG +E F +M + G+KPN + EG +
Sbjct: 538 RNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRH 597
Query: 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT 303
F+ M E+ ++ P ++HY C++D+L RAG L A E + +P Q +V+VWRT
Sbjct: 598 FNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQ-ADVLVWRT 648
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 90/195 (46%), Gaps = 17/195 (8%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL---GFLKDSS 79
D FT S + C L +LG QLH+ + G V +L DMY G + D
Sbjct: 268 DKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDV--ECSLVDMYAKCSADGSVDDCR 325
Query: 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139
K+FD + + ++++W +ITG +K N + EA+ LF M + EP+ T
Sbjct: 326 KVFDRMEDHSVMSWTALITGYMK---------NCNLATEAINLFSEMITQGHVEPNHFTF 376
Query: 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199
+ A + R + + G KRG A + V+N +I + K + A + FE S
Sbjct: 377 SSAFKACGNLSDPRVGKQVLGQAFKRGL-ASNSSVANSVISMFVKSDRMEDAQRAFE--S 433
Query: 200 VDRKNLVSWTTIISG 214
+ KNLVS+ T + G
Sbjct: 434 LSEKNLVSYNTFLDG 448
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 111/227 (48%), Gaps = 29/227 (12%)
Query: 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVS-LGFLKDSSK 80
+ + Y+ +IR C + +G K G F+S V V +L DM+V +++ K
Sbjct: 165 NDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYK 224
Query: 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140
+FD++ E N+VTW ++IT ++ G+ R EA+ F M + E + T+
Sbjct: 225 VFDKMSELNVVTWTLMITRCMQM-----GFPR-----EAIRFFLDMVLSGF-ESDKFTLS 273
Query: 141 AVLPAIWKNGEVRNCQL---IHGYGEKRGFNAFDIHVSNCLIDTYAKC---GCIFSASKL 194
+V A E+ N L +H + + G D+ S L+D YAKC G + K+
Sbjct: 274 SVFSAC---AELENLSLGKQLHSWAIRSGL-VDDVECS--LVDMYAKCSADGSVDDCRKV 327
Query: 195 FEDTSVDRKNLVSWTTIISGFAMH-GMGKEAVENFERMQKVG-LKPN 239
F+ ++ +++SWT +I+G+ + + EA+ F M G ++PN
Sbjct: 328 FD--RMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPN 372
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 99/227 (43%), Gaps = 36/227 (15%)
Query: 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83
+FT++ L+ + G Q+H+ K+G + V AL MY G + +S++F+
Sbjct: 474 AFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFN 533
Query: 84 ELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL 143
+ RN+++W +ITG K I L F +M E +P+E+T +A+L
Sbjct: 534 FMENRNVISWTSMITGFAKHGFAI----------RVLETFNQMIE-EGVKPNEVTYVAIL 582
Query: 144 PAIWKNGEVRNCQLIHGYGEKRGFNA-FDIHVSN-------CLIDTYAKCGCIFSASKLF 195
A G V G+ R FN+ ++ H C++D + G + A + F
Sbjct: 583 SACSHVGLVS-----EGW---RHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFE-F 633
Query: 196 EDTSVDRKNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKPN 239
+T + +++ W T + +H +GK A + L PN
Sbjct: 634 INTMPFQADVLVWRTFLGACRVHSNTELGKLAARKI-----LELDPN 675
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 19/224 (8%)
Query: 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81
DS T+S L+++C+ LG +HA + + + +L +Y G + +
Sbjct: 60 MDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDV 119
Query: 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE----PSEI 137
F+ + R +V V W+ ++ Y R +A+ +F E+ E P++
Sbjct: 120 FETM--RRFGKRDV-----VSWSAMMACYGNNGRELDAIKVF-----VEFLELGLVPNDY 167
Query: 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF-SASKLFE 196
AV+ A + V ++ G+ K G D+ V LID + K F +A K+F+
Sbjct: 168 CYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFD 227
Query: 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240
S N+V+WT +I+ G +EA+ F M G + ++
Sbjct: 228 KMS--ELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDK 269
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,896,751
Number of Sequences: 539616
Number of extensions: 5453233
Number of successful extensions: 18838
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 138
Number of HSP's that attempted gapping in prelim test: 14528
Number of HSP's gapped (non-prelim): 1469
length of query: 352
length of database: 191,569,459
effective HSP length: 118
effective length of query: 234
effective length of database: 127,894,771
effective search space: 29927376414
effective search space used: 29927376414
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)