Query 042593
Match_columns 352
No_of_seqs 336 out of 1702
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 07:40:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042593.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042593hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 9E-52 2E-56 398.0 26.9 290 23-325 436-746 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 4.5E-51 9.7E-56 393.2 28.6 305 2-326 458-782 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1E-50 2.2E-55 386.6 27.7 322 2-352 210-542 (697)
4 PLN03081 pentatricopeptide (PP 100.0 1.6E-50 3.4E-55 385.3 28.3 301 1-326 107-419 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 1.5E-49 3.2E-54 387.0 28.7 301 1-326 172-483 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 9.8E-49 2.1E-53 381.2 26.9 298 1-325 273-581 (857)
7 PRK11788 tetratricopeptide rep 99.9 1.7E-19 3.8E-24 161.6 25.6 289 27-326 38-346 (389)
8 PRK11788 tetratricopeptide rep 99.8 1.4E-18 3E-23 155.7 24.6 253 66-331 42-315 (389)
9 TIGR02917 PEP_TPR_lipo putativ 99.8 4.5E-18 9.7E-23 168.1 27.3 299 23-329 464-801 (899)
10 TIGR02917 PEP_TPR_lipo putativ 99.8 7E-18 1.5E-22 166.8 26.9 282 23-324 532-829 (899)
11 PRK15174 Vi polysaccharide exp 99.7 3.2E-15 6.9E-20 141.3 27.0 288 24-331 76-385 (656)
12 KOG4626 O-linked N-acetylgluco 99.7 6.1E-16 1.3E-20 135.9 17.8 295 23-326 115-450 (966)
13 PRK15174 Vi polysaccharide exp 99.7 7.7E-14 1.7E-18 132.0 25.9 287 23-330 41-350 (656)
14 PF13429 TPR_15: Tetratricopep 99.6 6.3E-16 1.4E-20 131.9 8.3 260 29-325 13-275 (280)
15 TIGR00990 3a0801s09 mitochondr 99.6 3E-13 6.6E-18 128.0 25.5 289 27-328 130-497 (615)
16 TIGR00990 3a0801s09 mitochondr 99.6 1.3E-13 2.7E-18 130.6 22.6 188 37-235 307-497 (615)
17 PRK11447 cellulose synthase su 99.5 3.6E-12 7.8E-17 128.6 27.1 289 31-326 276-665 (1157)
18 PRK11447 cellulose synthase su 99.5 4E-12 8.7E-17 128.2 26.8 291 23-327 302-700 (1157)
19 KOG4626 O-linked N-acetylgluco 99.5 1E-12 2.2E-17 116.1 19.3 264 58-338 115-394 (966)
20 PF13429 TPR_15: Tetratricopep 99.5 3.9E-14 8.5E-19 120.9 10.3 231 23-293 43-276 (280)
21 PRK10049 pgaA outer membrane p 99.5 7.8E-12 1.7E-16 120.8 26.8 294 24-332 83-461 (765)
22 PRK10747 putative protoheme IX 99.5 8.9E-12 1.9E-16 111.4 23.9 272 37-325 97-388 (398)
23 KOG4422 Uncharacterized conser 99.5 2.3E-11 5E-16 103.2 23.7 284 23-324 206-587 (625)
24 TIGR00540 hemY_coli hemY prote 99.5 7.9E-11 1.7E-15 105.8 25.2 285 26-325 84-397 (409)
25 PRK10049 pgaA outer membrane p 99.4 4.1E-11 8.8E-16 115.9 24.6 290 21-329 12-341 (765)
26 KOG4318 Bicoid mRNA stability 99.4 9.9E-12 2.1E-16 113.8 18.4 246 3-281 12-287 (1088)
27 PF13041 PPR_2: PPR repeat fam 99.4 1.7E-13 3.6E-18 83.6 4.9 49 23-71 2-50 (50)
28 PRK09782 bacteriophage N4 rece 99.4 8.3E-11 1.8E-15 114.7 25.1 258 23-325 476-738 (987)
29 TIGR02521 type_IV_pilW type IV 99.4 6.2E-11 1.3E-15 98.0 20.9 201 24-234 31-232 (234)
30 KOG4422 Uncharacterized conser 99.4 8.1E-11 1.7E-15 99.9 21.1 222 56-294 204-462 (625)
31 PRK09782 bacteriophage N4 rece 99.4 9.5E-11 2.1E-15 114.3 23.6 230 58-329 476-708 (987)
32 COG2956 Predicted N-acetylgluc 99.4 1.7E-10 3.7E-15 94.5 20.7 271 26-329 38-313 (389)
33 PRK14574 hmsH outer membrane p 99.4 9.9E-10 2.1E-14 105.2 28.9 290 31-324 109-510 (822)
34 PF13041 PPR_2: PPR repeat fam 99.4 1.4E-12 3E-17 79.5 5.7 45 103-148 6-50 (50)
35 PRK10747 putative protoheme IX 99.4 7.2E-10 1.6E-14 99.2 25.4 244 31-292 125-388 (398)
36 COG3071 HemY Uncharacterized e 99.4 7.9E-10 1.7E-14 93.3 22.8 276 36-325 96-388 (400)
37 KOG1126 DNA-binding cell divis 99.3 2.4E-11 5.2E-16 108.4 14.4 190 39-234 334-552 (638)
38 TIGR02521 type_IV_pilW type IV 99.3 4.3E-10 9.4E-15 92.9 20.4 201 57-292 29-230 (234)
39 PRK14574 hmsH outer membrane p 99.3 6E-10 1.3E-14 106.7 23.0 284 27-327 38-396 (822)
40 TIGR00540 hemY_coli hemY prote 99.3 2.5E-09 5.5E-14 96.2 24.1 247 28-291 122-396 (409)
41 KOG2076 RNA polymerase III tra 99.3 2.7E-09 5.8E-14 98.5 23.3 298 25-334 140-485 (895)
42 KOG1155 Anaphase-promoting com 99.3 5.3E-10 1.2E-14 95.9 17.4 252 31-326 234-494 (559)
43 KOG1129 TPR repeat-containing 99.2 5E-10 1.1E-14 92.0 15.7 228 28-296 227-460 (478)
44 KOG1126 DNA-binding cell divis 99.2 2.3E-10 5E-15 102.2 14.6 203 23-238 420-624 (638)
45 KOG1840 Kinesin light chain [C 99.2 2.9E-09 6.3E-14 95.7 21.3 243 25-292 200-477 (508)
46 COG2956 Predicted N-acetylgluc 99.2 1.6E-08 3.5E-13 83.2 23.3 257 23-292 68-345 (389)
47 PRK12370 invasion protein regu 99.2 6.7E-09 1.4E-13 97.0 22.5 198 23-233 255-469 (553)
48 PRK12370 invasion protein regu 99.1 1.5E-08 3.4E-13 94.6 21.7 183 38-234 318-502 (553)
49 KOG1155 Anaphase-promoting com 99.1 9.2E-08 2E-12 82.5 24.2 193 28-236 266-463 (559)
50 KOG1840 Kinesin light chain [C 99.1 4.8E-09 1E-13 94.3 17.1 243 59-325 199-477 (508)
51 KOG2002 TPR-containing nuclear 99.1 6.2E-09 1.3E-13 96.9 17.9 81 245-327 628-709 (1018)
52 KOG0495 HAT repeat protein [RN 99.1 1.5E-07 3.2E-12 84.5 24.2 295 15-331 473-786 (913)
53 KOG2076 RNA polymerase III tra 99.1 6.7E-08 1.4E-12 89.6 22.4 295 21-325 170-510 (895)
54 KOG0547 Translocase of outer m 99.1 2.7E-08 5.9E-13 86.2 18.5 206 114-325 340-564 (606)
55 KOG4318 Bicoid mRNA stability 99.1 7E-09 1.5E-13 95.7 15.4 248 45-318 11-291 (1088)
56 KOG1174 Anaphase-promoting com 99.0 7.3E-07 1.6E-11 76.0 23.4 294 23-331 193-504 (564)
57 PF12854 PPR_1: PPR repeat 99.0 6.7E-10 1.5E-14 61.0 3.6 34 53-86 1-34 (34)
58 PF04733 Coatomer_E: Coatomer 99.0 3.4E-08 7.3E-13 83.8 15.5 246 34-324 11-262 (290)
59 COG3071 HemY Uncharacterized e 99.0 4.2E-07 9E-12 77.2 21.6 237 23-294 152-390 (400)
60 KOG1173 Anaphase-promoting com 99.0 3.7E-07 8E-12 80.7 21.8 251 23-311 277-535 (611)
61 KOG2003 TPR repeat-containing 99.0 7.8E-08 1.7E-12 82.8 17.0 266 32-313 427-709 (840)
62 KOG2002 TPR-containing nuclear 98.9 3.9E-08 8.4E-13 91.8 16.1 262 23-294 451-745 (1018)
63 COG3063 PilF Tfp pilus assembl 98.9 5.2E-07 1.1E-11 71.1 19.7 195 26-233 37-235 (250)
64 KOG2003 TPR repeat-containing 98.9 6E-08 1.3E-12 83.5 15.4 260 67-338 427-700 (840)
65 PRK11189 lipoprotein NlpI; Pro 98.9 6.9E-07 1.5E-11 76.7 21.6 194 103-303 67-275 (296)
66 PRK11189 lipoprotein NlpI; Pro 98.9 4.3E-07 9.2E-12 78.0 20.1 191 24-234 64-265 (296)
67 PF12854 PPR_1: PPR repeat 98.9 2.8E-09 6.1E-14 58.5 4.0 33 260-292 2-34 (34)
68 COG3063 PilF Tfp pilus assembl 98.8 1.1E-06 2.4E-11 69.3 18.6 204 62-301 38-243 (250)
69 PF12569 NARP1: NMDA receptor- 98.8 4.2E-07 9E-12 82.8 18.6 246 30-294 10-291 (517)
70 KOG1915 Cell cycle control pro 98.8 3.2E-06 7E-11 73.5 22.7 286 15-309 168-551 (677)
71 KOG1129 TPR repeat-containing 98.8 5.5E-08 1.2E-12 80.3 11.5 225 63-325 227-456 (478)
72 PF04733 Coatomer_E: Coatomer 98.8 6.1E-07 1.3E-11 76.2 18.2 215 23-257 65-287 (290)
73 KOG0495 HAT repeat protein [RN 98.8 6.9E-06 1.5E-10 74.2 23.4 274 26-320 586-873 (913)
74 PF12569 NARP1: NMDA receptor- 98.8 2.6E-06 5.7E-11 77.7 21.0 250 23-294 37-334 (517)
75 KOG1173 Anaphase-promoting com 98.7 2.7E-06 5.9E-11 75.4 19.0 261 56-331 241-522 (611)
76 cd05804 StaR_like StaR_like; a 98.7 1.6E-05 3.6E-10 70.3 24.3 287 24-325 6-334 (355)
77 KOG1915 Cell cycle control pro 98.7 6E-06 1.3E-10 71.9 20.0 270 36-324 119-497 (677)
78 KOG1070 rRNA processing protei 98.6 6.1E-06 1.3E-10 80.3 19.4 234 56-329 1455-1701(1710)
79 PRK14720 transcript cleavage f 98.6 1.7E-05 3.7E-10 76.2 22.2 250 23-324 30-280 (906)
80 KOG0547 Translocase of outer m 98.6 9.4E-06 2E-10 70.9 17.8 213 37-293 339-565 (606)
81 KOG1914 mRNA cleavage and poly 98.6 2E-05 4.4E-10 69.7 19.8 65 20-86 16-80 (656)
82 TIGR03302 OM_YfiO outer membra 98.6 5.9E-06 1.3E-10 68.6 16.2 182 23-234 32-232 (235)
83 TIGR03302 OM_YfiO outer membra 98.6 1.2E-05 2.6E-10 66.8 17.9 176 58-258 32-232 (235)
84 cd05804 StaR_like StaR_like; a 98.5 0.00023 5E-09 63.0 25.5 250 32-293 51-335 (355)
85 KOG4340 Uncharacterized conser 98.5 7.5E-05 1.6E-09 61.5 19.8 264 23-307 9-286 (459)
86 KOG1070 rRNA processing protei 98.5 4.3E-05 9.3E-10 74.7 21.2 205 23-238 1457-1667(1710)
87 TIGR00756 PPR pentatricopeptid 98.5 3.4E-07 7.3E-12 50.8 4.4 35 206-240 1-35 (35)
88 KOG3785 Uncharacterized conser 98.5 0.00024 5.2E-09 60.0 22.5 78 245-324 375-454 (557)
89 COG5010 TadD Flp pilus assembl 98.4 7.9E-05 1.7E-09 60.3 19.0 160 58-232 66-229 (257)
90 KOG1128 Uncharacterized conser 98.4 2.6E-05 5.6E-10 71.4 17.9 207 23-258 397-616 (777)
91 PLN02789 farnesyltranstransfer 98.4 0.00012 2.7E-09 63.1 21.2 195 27-233 40-249 (320)
92 PF13812 PPR_3: Pentatricopept 98.4 4.5E-07 9.7E-12 50.0 4.1 33 206-238 2-34 (34)
93 PRK10370 formate-dependent nit 98.4 0.00013 2.8E-09 58.5 19.7 163 103-307 19-186 (198)
94 KOG1174 Anaphase-promoting com 98.4 9.3E-05 2E-09 63.6 19.0 204 133-338 191-408 (564)
95 KOG1156 N-terminal acetyltrans 98.4 0.0002 4.2E-09 65.0 21.8 296 26-325 43-432 (700)
96 KOG1128 Uncharacterized conser 98.4 1.8E-05 3.9E-10 72.4 14.9 250 23-324 341-613 (777)
97 PLN02789 farnesyltranstransfer 98.4 0.00018 3.9E-09 62.1 20.6 213 62-311 40-268 (320)
98 KOG1125 TPR repeat-containing 98.3 1E-05 2.2E-10 72.1 12.9 184 146-331 295-497 (579)
99 COG5010 TadD Flp pilus assembl 98.3 7.6E-05 1.6E-09 60.4 16.2 159 28-198 70-228 (257)
100 KOG2047 mRNA splicing factor [ 98.3 0.00031 6.7E-09 63.8 21.5 285 28-325 106-452 (835)
101 PRK15359 type III secretion sy 98.3 3.9E-05 8.4E-10 58.2 14.1 94 139-234 27-121 (144)
102 PF13812 PPR_3: Pentatricopept 98.3 9.3E-07 2E-11 48.7 3.7 33 25-57 2-34 (34)
103 TIGR00756 PPR pentatricopeptid 98.3 1.2E-06 2.5E-11 48.6 4.1 33 103-136 3-35 (35)
104 KOG1125 TPR repeat-containing 98.3 5.5E-05 1.2E-09 67.5 16.2 192 32-234 293-493 (579)
105 PRK15179 Vi polysaccharide bio 98.3 0.00013 2.9E-09 69.3 19.3 144 55-212 82-229 (694)
106 PRK10370 formate-dependent nit 98.3 0.00013 2.9E-09 58.5 16.8 118 113-234 52-173 (198)
107 KOG0985 Vesicle coat protein c 98.3 0.00013 2.8E-09 69.4 18.6 197 103-325 1107-1306(1666)
108 PRK15179 Vi polysaccharide bio 98.3 0.00032 7E-09 66.8 21.4 126 103-233 89-216 (694)
109 KOG3081 Vesicle coat complex C 98.2 0.00025 5.5E-09 57.5 17.3 55 260-314 202-257 (299)
110 KOG0624 dsRNA-activated protei 98.2 0.00037 7.9E-09 58.7 18.4 284 28-326 42-369 (504)
111 PRK15359 type III secretion sy 98.2 3.7E-05 8E-10 58.3 11.6 103 103-209 27-130 (144)
112 KOG3081 Vesicle coat complex C 98.2 0.0015 3.3E-08 53.2 20.3 170 46-233 95-270 (299)
113 PF01535 PPR: PPR repeat; Int 98.1 3.2E-06 6.9E-11 45.3 3.5 31 206-236 1-31 (31)
114 PF09976 TPR_21: Tetratricopep 98.1 0.00015 3.3E-09 55.1 14.1 127 103-231 15-144 (145)
115 KOG2376 Signal recognition par 98.1 0.0032 7E-08 56.9 23.7 194 27-235 15-254 (652)
116 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 8.5E-05 1.9E-09 65.5 13.9 123 103-232 172-295 (395)
117 KOG4162 Predicted calmodulin-b 98.1 0.0016 3.5E-08 60.5 21.9 175 23-201 322-542 (799)
118 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 9.9E-05 2.2E-09 65.1 13.7 96 139-241 172-268 (395)
119 COG4783 Putative Zn-dependent 98.1 0.0015 3.2E-08 57.7 20.5 118 110-232 316-435 (484)
120 TIGR02552 LcrH_SycD type III s 98.1 0.00011 2.3E-09 55.2 11.8 94 138-233 19-113 (135)
121 KOG3785 Uncharacterized conser 98.1 0.00075 1.6E-08 57.1 17.2 60 26-86 58-118 (557)
122 KOG0548 Molecular co-chaperone 98.0 0.00085 1.8E-08 59.7 17.9 98 142-242 230-335 (539)
123 COG4783 Putative Zn-dependent 98.0 0.0015 3.3E-08 57.6 19.2 206 47-291 209-434 (484)
124 KOG2047 mRNA splicing factor [ 98.0 0.0038 8.2E-08 57.1 21.9 118 23-147 137-292 (835)
125 KOG3060 Uncharacterized conser 98.0 0.00077 1.7E-08 54.4 15.7 189 113-329 25-222 (289)
126 TIGR02552 LcrH_SycD type III s 98.0 8.5E-05 1.9E-09 55.7 10.2 92 27-126 20-111 (135)
127 KOG3616 Selective LIM binding 98.0 0.00062 1.3E-08 62.9 16.8 185 109-321 741-931 (1636)
128 PRK04841 transcriptional regul 98.0 0.0018 3.9E-08 65.0 21.7 295 27-326 412-759 (903)
129 PF09976 TPR_21: Tetratricopep 97.9 0.00042 9E-09 52.7 12.3 128 60-197 13-143 (145)
130 PF01535 PPR: PPR repeat; Int 97.9 1.3E-05 2.8E-10 42.9 2.9 30 26-55 2-31 (31)
131 PF08579 RPM2: Mitochondrial r 97.9 0.00016 3.4E-09 50.7 8.7 81 103-185 28-117 (120)
132 PF10037 MRP-S27: Mitochondria 97.9 0.00019 4.1E-09 63.7 11.0 123 53-185 60-186 (429)
133 KOG4340 Uncharacterized conser 97.8 0.002 4.4E-08 53.3 15.9 253 23-294 43-339 (459)
134 KOG0985 Vesicle coat protein c 97.8 0.019 4.2E-07 55.4 23.7 47 265-315 1220-1266(1666)
135 KOG3617 WD40 and TPR repeat-co 97.8 0.0014 3E-08 61.5 15.9 259 36-336 812-1117(1416)
136 KOG2376 Signal recognition par 97.8 0.019 4.1E-07 52.1 22.2 114 207-323 378-516 (652)
137 KOG3617 WD40 and TPR repeat-co 97.8 0.00055 1.2E-08 64.0 13.1 181 23-230 756-963 (1416)
138 KOG3060 Uncharacterized conser 97.8 0.0081 1.8E-07 48.7 18.1 134 103-243 55-190 (289)
139 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00064 1.4E-08 49.4 11.2 95 140-234 6-105 (119)
140 PF05843 Suf: Suppressor of fo 97.8 0.00066 1.4E-08 57.8 12.6 128 103-234 4-136 (280)
141 PF14938 SNAP: Soluble NSF att 97.8 0.012 2.6E-07 50.2 20.4 209 25-294 36-266 (282)
142 cd00189 TPR Tetratricopeptide 97.8 0.0005 1.1E-08 47.2 10.1 89 142-232 6-95 (100)
143 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.0005 1.1E-08 50.0 10.5 99 173-294 3-105 (119)
144 PRK04841 transcriptional regul 97.8 0.0046 1E-07 62.1 20.6 242 26-294 493-760 (903)
145 PRK14720 transcript cleavage f 97.8 0.001 2.3E-08 64.3 14.9 228 57-334 29-259 (906)
146 KOG1127 TPR repeat-containing 97.8 0.0013 2.9E-08 62.8 15.2 165 59-233 492-658 (1238)
147 KOG3616 Selective LIM binding 97.7 0.0019 4.2E-08 59.8 15.7 169 30-231 738-908 (1636)
148 KOG2053 Mitochondrial inherita 97.7 0.0031 6.7E-08 59.6 16.9 207 111-324 20-252 (932)
149 KOG1156 N-terminal acetyltrans 97.7 0.0056 1.2E-07 56.0 17.9 191 25-232 9-212 (700)
150 PF12895 Apc3: Anaphase-promot 97.7 9.4E-05 2E-09 50.4 5.5 82 113-197 2-83 (84)
151 cd00189 TPR Tetratricopeptide 97.7 0.00057 1.2E-08 46.9 9.8 97 103-203 3-99 (100)
152 PF10037 MRP-S27: Mitochondria 97.7 0.00058 1.3E-08 60.7 11.4 130 4-149 51-186 (429)
153 PF04840 Vps16_C: Vps16, C-ter 97.7 0.0068 1.5E-07 52.3 17.6 110 174-324 179-288 (319)
154 PF05843 Suf: Suppressor of fo 97.7 0.00029 6.2E-09 60.0 9.0 146 137-308 2-150 (280)
155 KOG2053 Mitochondrial inherita 97.6 0.055 1.2E-06 51.6 23.6 191 27-235 44-256 (932)
156 PRK02603 photosystem I assembl 97.6 0.0045 9.8E-08 48.5 14.6 129 137-280 36-166 (172)
157 KOG4162 Predicted calmodulin-b 97.6 0.0043 9.3E-08 57.8 16.0 240 51-328 315-577 (799)
158 PF08579 RPM2: Mitochondrial r 97.6 0.00092 2E-08 47.0 8.6 80 138-218 27-117 (120)
159 PF12895 Apc3: Anaphase-promot 97.6 0.00024 5.1E-09 48.3 5.7 81 149-230 2-83 (84)
160 PRK02603 photosystem I assembl 97.6 0.0053 1.2E-07 48.1 14.1 84 103-188 38-122 (172)
161 PF14559 TPR_19: Tetratricopep 97.5 0.00045 9.8E-09 44.7 6.4 63 147-211 2-64 (68)
162 KOG0548 Molecular co-chaperone 97.4 0.018 4E-07 51.6 17.0 190 27-233 227-420 (539)
163 PRK15363 pathogenicity island 97.4 0.0071 1.5E-07 45.7 12.5 95 138-234 37-132 (157)
164 CHL00033 ycf3 photosystem I as 97.4 0.0092 2E-07 46.6 13.8 97 136-232 35-140 (168)
165 COG4700 Uncharacterized protei 97.4 0.032 6.9E-07 43.2 15.8 129 103-232 92-220 (251)
166 PRK15363 pathogenicity island 97.4 0.023 4.9E-07 43.1 14.9 91 103-198 38-129 (157)
167 PF06239 ECSIT: Evolutionarily 97.4 0.0012 2.7E-08 52.2 8.3 82 103-186 50-152 (228)
168 CHL00033 ycf3 photosystem I as 97.4 0.0058 1.3E-07 47.7 12.2 64 171-234 34-101 (168)
169 PLN03088 SGT1, suppressor of 97.4 0.0039 8.5E-08 55.0 12.4 102 107-212 9-110 (356)
170 PRK10866 outer membrane biogen 97.4 0.061 1.3E-06 44.7 18.6 58 212-292 182-239 (243)
171 COG5107 RNA14 Pre-mRNA 3'-end 97.3 0.026 5.6E-07 49.7 16.0 136 171-311 396-548 (660)
172 KOG1914 mRNA cleavage and poly 97.3 0.033 7.1E-07 50.2 16.5 128 103-234 369-501 (656)
173 PRK10866 outer membrane biogen 97.2 0.025 5.5E-07 47.0 15.2 57 177-233 180-240 (243)
174 PF06239 ECSIT: Evolutionarily 97.2 0.0035 7.6E-08 49.7 9.1 101 171-280 46-153 (228)
175 PLN03088 SGT1, suppressor of 97.2 0.0061 1.3E-07 53.8 11.9 91 143-235 9-100 (356)
176 PF13432 TPR_16: Tetratricopep 97.2 0.0014 3.1E-08 41.9 5.7 54 180-233 5-59 (65)
177 PRK10153 DNA-binding transcrip 97.2 0.02 4.3E-07 53.0 15.1 130 103-235 340-483 (517)
178 KOG0624 dsRNA-activated protei 97.1 0.13 2.9E-06 43.8 24.2 263 23-294 68-370 (504)
179 PRK10153 DNA-binding transcrip 97.1 0.021 4.6E-07 52.9 14.6 140 133-301 334-489 (517)
180 PF14559 TPR_19: Tetratricopep 97.1 0.002 4.3E-08 41.6 5.9 64 216-305 2-65 (68)
181 PF14938 SNAP: Soluble NSF att 97.1 0.0053 1.2E-07 52.4 10.0 191 103-315 38-251 (282)
182 PF13525 YfiO: Outer membrane 97.1 0.048 1E-06 44.0 14.9 182 23-225 4-198 (203)
183 KOG0553 TPR repeat-containing 97.0 0.009 2E-07 49.7 9.9 95 146-244 91-186 (304)
184 KOG0553 TPR repeat-containing 97.0 0.01 2.2E-07 49.4 10.1 97 69-181 91-191 (304)
185 PF13432 TPR_16: Tetratricopep 97.0 0.0045 9.7E-08 39.5 6.5 61 142-204 3-63 (65)
186 PF12688 TPR_5: Tetratrico pep 97.0 0.015 3.1E-07 42.3 9.7 91 30-126 7-101 (120)
187 PF12921 ATP13: Mitochondrial 96.9 0.012 2.7E-07 43.1 9.0 102 204-315 1-105 (126)
188 KOG2796 Uncharacterized conser 96.9 0.091 2E-06 43.1 14.4 132 103-236 180-317 (366)
189 COG4700 Uncharacterized protei 96.9 0.057 1.2E-06 41.9 12.4 128 132-287 85-215 (251)
190 PF13414 TPR_11: TPR repeat; P 96.8 0.004 8.6E-08 40.3 5.6 62 172-233 3-66 (69)
191 PF04840 Vps16_C: Vps16, C-ter 96.8 0.18 3.9E-06 43.7 16.7 57 263-323 206-262 (319)
192 PF03704 BTAD: Bacterial trans 96.8 0.0079 1.7E-07 45.7 7.6 63 171-233 61-124 (146)
193 PRK10803 tol-pal system protei 96.7 0.015 3.2E-07 48.8 9.5 104 172-298 143-250 (263)
194 KOG1127 TPR repeat-containing 96.7 0.029 6.3E-07 54.1 11.9 171 152-331 474-663 (1238)
195 PF12921 ATP13: Mitochondrial 96.7 0.027 5.8E-07 41.4 9.4 44 103-146 55-98 (126)
196 PF13414 TPR_11: TPR repeat; P 96.7 0.0062 1.4E-07 39.4 5.6 64 135-200 2-66 (69)
197 KOG2041 WD40 repeat protein [G 96.7 0.13 2.9E-06 47.9 15.4 23 272-294 930-952 (1189)
198 KOG2796 Uncharacterized conser 96.6 0.27 5.8E-06 40.5 15.4 140 138-304 179-325 (366)
199 PF08631 SPO22: Meiosis protei 96.6 0.38 8.3E-06 41.0 22.1 167 70-241 4-193 (278)
200 PRK10803 tol-pal system protei 96.5 0.053 1.2E-06 45.5 11.5 97 138-234 145-246 (263)
201 PF13371 TPR_9: Tetratricopept 96.5 0.016 3.4E-07 37.9 6.8 52 146-199 5-56 (73)
202 PF12688 TPR_5: Tetratrico pep 96.5 0.11 2.5E-06 37.7 11.5 108 106-216 7-117 (120)
203 COG4235 Cytochrome c biogenesi 96.5 0.058 1.3E-06 45.2 11.1 100 134-235 154-257 (287)
204 PF13424 TPR_12: Tetratricopep 96.4 0.0075 1.6E-07 40.1 4.8 62 172-233 5-74 (78)
205 COG4235 Cytochrome c biogenesi 96.4 0.2 4.3E-06 42.1 13.7 115 169-309 153-271 (287)
206 KOG2280 Vacuolar assembly/sort 96.3 0.33 7.1E-06 45.8 16.0 114 172-325 684-797 (829)
207 PF13525 YfiO: Outer membrane 96.2 0.45 9.8E-06 38.3 15.1 157 105-285 10-198 (203)
208 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.1 2.2E-06 46.6 11.0 64 171-234 74-141 (453)
209 PF13371 TPR_9: Tetratricopept 96.1 0.027 5.9E-07 36.8 6.0 57 179-235 2-59 (73)
210 PF13424 TPR_12: Tetratricopep 96.0 0.019 4.2E-07 38.1 5.2 63 59-126 5-72 (78)
211 KOG0550 Molecular chaperone (D 96.0 0.13 2.7E-06 45.1 10.9 157 144-326 177-349 (486)
212 KOG1538 Uncharacterized conser 95.8 0.34 7.3E-06 45.0 13.4 62 23-87 597-660 (1081)
213 PF10300 DUF3808: Protein of u 95.8 0.42 9.2E-06 44.0 14.5 164 103-294 191-376 (468)
214 PF13281 DUF4071: Domain of un 95.8 1.2 2.7E-05 39.2 17.0 166 106-294 147-334 (374)
215 KOG2114 Vacuolar assembly/sort 95.7 0.45 9.8E-06 45.5 14.1 169 15-199 274-458 (933)
216 PF04053 Coatomer_WDAD: Coatom 95.6 0.66 1.4E-05 42.2 14.8 158 32-230 269-427 (443)
217 KOG1130 Predicted G-alpha GTPa 95.6 0.38 8.2E-06 42.2 12.4 255 25-290 16-340 (639)
218 COG1729 Uncharacterized protei 95.6 0.11 2.5E-06 42.9 9.0 102 103-205 145-248 (262)
219 PF04053 Coatomer_WDAD: Coatom 95.6 0.7 1.5E-05 42.1 14.9 134 24-198 295-428 (443)
220 PF07035 Mic1: Colon cancer-as 95.6 0.51 1.1E-05 36.4 12.0 125 15-165 23-149 (167)
221 KOG3941 Intermediate in Toll s 95.6 0.094 2E-06 43.5 8.3 106 21-152 64-174 (406)
222 KOG1538 Uncharacterized conser 95.5 0.75 1.6E-05 42.8 14.5 199 4-235 623-847 (1081)
223 PF03704 BTAD: Bacterial trans 95.5 0.06 1.3E-06 40.8 6.8 55 142-198 68-122 (146)
224 smart00299 CLH Clathrin heavy 95.5 0.73 1.6E-05 34.5 14.6 126 139-309 10-136 (140)
225 PF09205 DUF1955: Domain of un 95.5 0.54 1.2E-05 34.4 10.9 137 71-237 14-152 (161)
226 COG5107 RNA14 Pre-mRNA 3'-end 95.5 1.7 3.8E-05 38.8 16.6 128 103-234 400-531 (660)
227 PF10300 DUF3808: Protein of u 95.5 0.38 8.3E-06 44.3 13.0 183 44-234 177-376 (468)
228 smart00299 CLH Clathrin heavy 95.5 0.77 1.7E-05 34.4 14.5 130 23-183 6-136 (140)
229 PRK15331 chaperone protein Sic 95.4 0.15 3.2E-06 39.0 8.2 88 144-233 45-133 (165)
230 KOG3941 Intermediate in Toll s 95.3 0.14 3E-06 42.5 8.3 99 77-187 52-173 (406)
231 COG4105 ComL DNA uptake lipopr 95.3 1.4 2.9E-05 36.4 17.3 172 103-299 38-238 (254)
232 COG3898 Uncharacterized membra 95.3 1.8 4E-05 37.9 18.8 183 103-294 191-392 (531)
233 KOG2041 WD40 repeat protein [G 95.3 0.69 1.5E-05 43.5 13.4 129 56-197 689-821 (1189)
234 KOG2280 Vacuolar assembly/sort 95.1 2.8 6.1E-05 39.9 17.0 129 120-291 668-796 (829)
235 PF13512 TPR_18: Tetratricopep 95.0 0.39 8.5E-06 35.8 9.4 78 108-186 18-96 (142)
236 PF00637 Clathrin: Region in C 95.0 0.032 6.9E-07 42.1 3.8 131 27-187 10-140 (143)
237 PLN03098 LPA1 LOW PSII ACCUMUL 94.8 0.74 1.6E-05 41.3 11.9 63 136-200 75-140 (453)
238 KOG1130 Predicted G-alpha GTPa 94.7 0.015 3.2E-07 50.6 1.3 254 66-325 24-342 (639)
239 PF13170 DUF4003: Protein of u 94.6 1.5 3.2E-05 37.7 13.1 132 40-186 78-230 (297)
240 PF00637 Clathrin: Region in C 94.4 0.0028 6E-08 48.0 -3.3 87 141-233 12-98 (143)
241 COG3898 Uncharacterized membra 94.3 3.4 7.4E-05 36.3 19.3 28 59-86 188-215 (531)
242 PF09613 HrpB1_HrpK: Bacterial 94.3 1.1 2.4E-05 34.1 10.4 66 148-215 22-87 (160)
243 PF10602 RPN7: 26S proteasome 94.3 0.9 1.9E-05 35.7 10.4 97 103-200 39-141 (177)
244 PF13170 DUF4003: Protein of u 94.2 0.79 1.7E-05 39.3 10.8 25 246-271 199-223 (297)
245 COG4649 Uncharacterized protei 94.2 2 4.4E-05 33.2 12.6 136 58-201 58-196 (221)
246 PRK15331 chaperone protein Sic 94.1 0.83 1.8E-05 35.0 9.4 92 105-200 42-133 (165)
247 COG1747 Uncharacterized N-term 94.0 3.1 6.8E-05 37.9 14.0 168 136-307 66-248 (711)
248 PF07079 DUF1347: Protein of u 93.9 4.6 0.0001 36.3 22.7 115 187-305 395-532 (549)
249 COG1729 Uncharacterized protei 93.9 1.6 3.5E-05 36.3 11.4 97 137-234 143-244 (262)
250 PF13281 DUF4071: Domain of un 93.8 4.5 9.7E-05 35.8 17.6 70 23-92 140-219 (374)
251 COG0457 NrfG FOG: TPR repeat [ 93.8 2.8 6.1E-05 33.4 19.5 199 26-233 61-264 (291)
252 COG3629 DnrI DNA-binding trans 93.7 0.65 1.4E-05 39.1 9.1 64 171-234 152-216 (280)
253 PF13428 TPR_14: Tetratricopep 93.7 0.076 1.6E-06 30.7 2.7 40 266-305 2-42 (44)
254 PF09205 DUF1955: Domain of un 93.7 2.1 4.5E-05 31.5 11.9 129 35-168 13-152 (161)
255 PF13428 TPR_14: Tetratricopep 93.7 0.19 4.2E-06 29.0 4.4 29 175-203 4-32 (44)
256 PF04184 ST7: ST7 protein; In 93.6 2.8 6.1E-05 38.1 13.1 79 136-214 259-340 (539)
257 PF10602 RPN7: 26S proteasome 93.6 2.1 4.5E-05 33.6 11.3 99 172-294 36-142 (177)
258 PF07079 DUF1347: Protein of u 93.6 3 6.5E-05 37.4 13.0 120 110-234 16-157 (549)
259 KOG1920 IkappaB kinase complex 93.4 4.7 0.0001 40.6 15.1 30 56-86 788-819 (1265)
260 KOG0543 FKBP-type peptidyl-pro 93.2 2.1 4.5E-05 37.7 11.5 96 66-165 215-320 (397)
261 COG4649 Uncharacterized protei 93.1 3.3 7.2E-05 32.1 12.4 131 138-294 61-196 (221)
262 KOG4555 TPR repeat-containing 92.7 2.9 6.3E-05 30.7 9.7 90 145-236 52-146 (175)
263 KOG0543 FKBP-type peptidyl-pro 92.1 2 4.3E-05 37.8 10.0 124 108-233 216-354 (397)
264 PF13929 mRNA_stabil: mRNA sta 91.9 6.9 0.00015 33.1 13.3 113 116-229 144-262 (292)
265 KOG0550 Molecular chaperone (D 91.9 7 0.00015 34.7 12.9 174 23-201 167-350 (486)
266 PF13176 TPR_7: Tetratricopept 91.9 0.43 9.3E-06 26.1 3.9 26 207-232 1-26 (36)
267 COG3118 Thioredoxin domain-con 91.7 7.4 0.00016 33.0 15.1 124 108-234 142-265 (304)
268 PF13431 TPR_17: Tetratricopep 91.7 0.25 5.4E-06 26.7 2.8 32 47-79 2-33 (34)
269 COG4105 ComL DNA uptake lipopr 91.4 7.4 0.00016 32.3 14.5 58 177-234 172-233 (254)
270 TIGR02561 HrpB1_HrpK type III 91.2 4.5 9.8E-05 30.4 9.7 54 111-166 21-74 (153)
271 PF04184 ST7: ST7 protein; In 91.1 7 0.00015 35.7 12.4 75 105-179 264-338 (539)
272 KOG4570 Uncharacterized conser 91.1 2.4 5.1E-05 36.1 9.0 106 52-167 57-166 (418)
273 PF13176 TPR_7: Tetratricopept 90.7 0.53 1.1E-05 25.7 3.5 24 103-126 2-25 (36)
274 PF08631 SPO22: Meiosis protei 90.7 9.7 0.00021 32.4 18.5 154 111-265 4-192 (278)
275 KOG2610 Uncharacterized conser 90.6 11 0.00023 32.7 12.9 48 148-197 187-234 (491)
276 COG3118 Thioredoxin domain-con 90.5 9.9 0.00021 32.2 16.9 53 34-87 144-196 (304)
277 KOG2610 Uncharacterized conser 90.5 7.5 0.00016 33.6 11.5 116 112-229 115-233 (491)
278 KOG4555 TPR repeat-containing 90.3 2.2 4.8E-05 31.3 7.1 89 68-166 52-145 (175)
279 PF02284 COX5A: Cytochrome c o 89.8 4 8.6E-05 28.5 7.7 73 139-212 11-86 (108)
280 COG3629 DnrI DNA-binding trans 89.7 2.8 6E-05 35.4 8.4 61 138-200 155-215 (280)
281 KOG0276 Vesicle coat complex C 89.5 10 0.00022 35.5 12.2 79 103-198 669-747 (794)
282 COG1747 Uncharacterized N-term 89.3 18 0.00038 33.3 16.8 178 20-215 62-249 (711)
283 KOG2114 Vacuolar assembly/sort 89.2 13 0.00029 36.2 13.1 150 26-198 336-489 (933)
284 PF13431 TPR_17: Tetratricopep 89.1 0.63 1.4E-05 25.1 2.9 22 171-192 12-33 (34)
285 KOG1464 COP9 signalosome, subu 89.1 5.8 0.00012 33.1 9.6 200 112-326 39-259 (440)
286 cd00923 Cyt_c_Oxidase_Va Cytoc 88.9 2.5 5.5E-05 29.1 6.2 45 154-199 25-69 (103)
287 PF13512 TPR_18: Tetratricopep 88.7 8.3 0.00018 28.9 10.3 77 141-217 15-94 (142)
288 KOG1585 Protein required for f 88.7 12 0.00027 30.8 13.8 205 103-325 34-254 (308)
289 KOG2066 Vacuolar assembly/sort 88.4 26 0.00055 34.0 16.6 149 31-199 363-532 (846)
290 KOG1920 IkappaB kinase complex 88.1 8.1 0.00017 39.1 11.3 20 143-162 972-991 (1265)
291 PF13374 TPR_10: Tetratricopep 88.0 1.4 3.1E-05 24.5 4.2 29 205-233 2-30 (42)
292 KOG1941 Acetylcholine receptor 87.8 6.3 0.00014 34.4 9.3 229 34-290 16-271 (518)
293 PF13929 mRNA_stabil: mRNA sta 87.6 16 0.00036 30.9 13.8 115 72-197 141-263 (292)
294 COG5159 RPN6 26S proteasome re 87.6 7.6 0.00016 32.7 9.3 127 106-233 9-153 (421)
295 COG0457 NrfG FOG: TPR repeat [ 87.1 13 0.00029 29.4 22.3 221 38-294 37-265 (291)
296 PF00515 TPR_1: Tetratricopept 87.0 1 2.3E-05 23.9 3.0 26 208-233 4-29 (34)
297 PRK11906 transcriptional regul 86.7 25 0.00054 32.1 13.8 164 60-230 252-432 (458)
298 KOG1585 Protein required for f 86.6 8.5 0.00018 31.7 8.9 175 138-324 33-216 (308)
299 TIGR02561 HrpB1_HrpK type III 86.4 12 0.00027 28.2 11.0 54 34-89 20-74 (153)
300 cd00923 Cyt_c_Oxidase_Va Cytoc 85.5 2.2 4.8E-05 29.4 4.4 47 260-306 37-84 (103)
301 PF07719 TPR_2: Tetratricopept 85.4 1.4 3E-05 23.2 3.0 23 210-232 6-28 (34)
302 PF07163 Pex26: Pex26 protein; 85.2 8.9 0.00019 32.2 8.6 25 174-198 120-144 (309)
303 PF02259 FAT: FAT domain; Int 84.7 13 0.00029 32.6 10.6 64 263-326 144-212 (352)
304 COG4455 ImpE Protein of avirul 84.4 7 0.00015 31.6 7.4 76 103-181 4-81 (273)
305 PF11207 DUF2989: Protein of u 84.3 7.5 0.00016 31.0 7.6 75 148-225 119-198 (203)
306 PHA02875 ankyrin repeat protei 84.2 32 0.00069 31.1 14.2 206 3-241 17-231 (413)
307 PF13174 TPR_6: Tetratricopept 84.1 1.2 2.6E-05 23.3 2.3 25 179-203 7-31 (33)
308 PF00515 TPR_1: Tetratricopept 84.1 3.4 7.4E-05 21.8 4.2 26 173-198 2-27 (34)
309 PRK11906 transcriptional regul 84.1 33 0.00073 31.2 15.5 118 115-234 273-401 (458)
310 PF13374 TPR_10: Tetratricopep 84.0 1.5 3.2E-05 24.4 2.9 28 59-86 2-29 (42)
311 PRK15180 Vi polysaccharide bio 83.7 11 0.00025 34.2 9.2 127 112-242 301-428 (831)
312 PF07721 TPR_4: Tetratricopept 83.7 2.2 4.8E-05 21.2 3.1 22 62-83 4-25 (26)
313 PF10366 Vps39_1: Vacuolar sor 83.1 14 0.00031 26.2 8.8 24 103-126 42-65 (108)
314 PF02284 COX5A: Cytochrome c o 82.7 1.9 4.2E-05 29.9 3.3 48 260-307 40-88 (108)
315 KOG0276 Vesicle coat complex C 82.4 40 0.00088 31.8 12.3 99 111-230 648-746 (794)
316 TIGR02508 type_III_yscG type I 81.9 15 0.00032 25.6 8.5 85 40-139 21-105 (115)
317 COG4455 ImpE Protein of avirul 79.7 6.4 0.00014 31.8 5.7 60 26-86 3-62 (273)
318 PF07719 TPR_2: Tetratricopept 79.2 6.4 0.00014 20.5 4.2 26 173-198 2-27 (34)
319 PF13762 MNE1: Mitochondrial s 78.2 27 0.00058 26.3 10.3 96 49-155 27-134 (145)
320 PF04097 Nic96: Nup93/Nic96; 77.5 45 0.00098 32.2 11.9 96 179-294 421-534 (613)
321 PF10255 Paf67: RNA polymerase 77.4 32 0.0007 31.0 10.0 66 277-350 253-321 (404)
322 KOG4570 Uncharacterized conser 77.2 12 0.00027 32.0 6.9 96 103-201 67-164 (418)
323 PF02259 FAT: FAT domain; Int 77.2 50 0.0011 28.9 16.5 64 171-234 145-213 (352)
324 PF09477 Type_III_YscG: Bacter 77.0 23 0.0005 25.0 8.2 81 37-131 19-99 (116)
325 PF10579 Rapsyn_N: Rapsyn N-te 76.7 5.7 0.00012 26.2 3.9 45 112-156 18-63 (80)
326 PF09613 HrpB1_HrpK: Bacterial 76.1 33 0.00072 26.3 13.3 59 106-166 16-74 (160)
327 PF13181 TPR_8: Tetratricopept 75.6 9.1 0.0002 20.0 4.1 27 207-233 3-29 (34)
328 TIGR03504 FimV_Cterm FimV C-te 75.3 6.2 0.00013 22.8 3.4 25 211-235 5-29 (44)
329 TIGR03504 FimV_Cterm FimV C-te 75.1 6.9 0.00015 22.6 3.6 22 143-164 6-27 (44)
330 PRK10564 maltose regulon perip 75.0 5.7 0.00012 33.8 4.5 29 103-132 260-288 (303)
331 KOG2066 Vacuolar assembly/sort 75.0 87 0.0019 30.6 16.0 75 16-91 447-537 (846)
332 PF12926 MOZART2: Mitotic-spin 74.7 15 0.00033 24.7 5.5 63 23-87 9-71 (88)
333 cd08819 CARD_MDA5_2 Caspase ac 74.3 24 0.00052 23.9 7.0 66 155-225 21-86 (88)
334 TIGR02508 type_III_yscG type I 74.2 27 0.00059 24.4 7.7 78 152-235 21-98 (115)
335 PF10579 Rapsyn_N: Rapsyn N-te 73.9 9.2 0.0002 25.3 4.3 45 184-228 18-66 (80)
336 smart00028 TPR Tetratricopepti 73.7 7.1 0.00015 19.2 3.5 20 178-197 7-26 (34)
337 COG2976 Uncharacterized protei 73.2 46 0.00099 26.6 12.0 129 103-235 57-189 (207)
338 PRK15180 Vi polysaccharide bio 73.0 78 0.0017 29.2 11.6 107 148-257 301-419 (831)
339 PF11838 ERAP1_C: ERAP1-like C 72.8 62 0.0014 28.0 16.8 160 74-239 55-236 (324)
340 PF14669 Asp_Glu_race_2: Putat 72.6 47 0.001 26.4 12.8 67 16-85 3-77 (233)
341 PF06552 TOM20_plant: Plant sp 72.6 35 0.00076 26.8 7.9 74 154-235 53-137 (186)
342 PF07035 Mic1: Colon cancer-as 72.2 44 0.00095 25.9 14.7 41 45-85 15-55 (167)
343 PF14689 SPOB_a: Sensor_kinase 72.1 6.5 0.00014 24.7 3.3 45 189-233 7-51 (62)
344 KOG4567 GTPase-activating prot 72.0 49 0.0011 28.5 9.1 75 2-89 264-348 (370)
345 cd08819 CARD_MDA5_2 Caspase ac 72.0 28 0.0006 23.6 6.3 66 43-120 21-86 (88)
346 KOG2297 Predicted translation 71.5 49 0.0011 28.5 9.0 77 245-324 271-347 (412)
347 KOG4077 Cytochrome c oxidase, 71.1 24 0.00051 25.8 6.2 46 155-201 68-113 (149)
348 PF07163 Pex26: Pex26 protein; 70.9 65 0.0014 27.4 9.5 92 103-196 86-182 (309)
349 KOG4234 TPR repeat-containing 70.6 48 0.001 26.7 8.3 92 110-203 105-199 (271)
350 PHA02875 ankyrin repeat protei 70.5 83 0.0018 28.4 14.7 210 31-265 6-230 (413)
351 PF10475 DUF2450: Protein of u 70.0 60 0.0013 27.9 9.8 24 263-286 195-218 (291)
352 PRK10564 maltose regulon perip 69.9 10 0.00022 32.3 4.8 46 130-176 250-296 (303)
353 COG3947 Response regulator con 69.6 11 0.00025 31.9 5.0 59 26-85 281-339 (361)
354 PF11846 DUF3366: Domain of un 69.6 13 0.00027 29.7 5.3 38 196-233 135-172 (193)
355 KOG2034 Vacuolar sorting prote 69.5 1.3E+02 0.0027 30.1 15.3 173 30-231 364-556 (911)
356 PF08311 Mad3_BUB1_I: Mad3/BUB 69.5 42 0.00091 24.6 9.3 58 138-197 67-124 (126)
357 PF09868 DUF2095: Uncharacteri 69.1 19 0.00042 25.6 5.2 43 29-72 66-108 (128)
358 PF09477 Type_III_YscG: Bacter 68.8 39 0.00084 24.0 9.8 80 150-235 20-99 (116)
359 PF11848 DUF3368: Domain of un 68.5 18 0.0004 21.2 4.5 37 32-68 10-46 (48)
360 PF11846 DUF3366: Domain of un 68.5 23 0.0005 28.1 6.7 53 112-164 120-172 (193)
361 KOG2908 26S proteasome regulat 67.3 63 0.0014 28.2 8.9 20 179-198 122-141 (380)
362 COG4785 NlpI Lipoprotein NlpI, 67.1 69 0.0015 26.2 11.0 26 299-324 238-263 (297)
363 PRK09687 putative lyase; Provi 66.6 82 0.0018 26.9 18.3 186 23-234 67-263 (280)
364 COG2976 Uncharacterized protei 66.4 66 0.0014 25.7 11.8 129 59-201 54-188 (207)
365 PF13762 MNE1: Mitochondrial s 66.3 54 0.0012 24.7 9.6 82 103-185 42-128 (145)
366 PF10366 Vps39_1: Vacuolar sor 65.5 46 0.001 23.6 8.0 28 173-200 40-67 (108)
367 PF04090 RNA_pol_I_TF: RNA pol 65.2 66 0.0014 25.8 8.3 60 25-85 42-102 (199)
368 KOG0128 RNA-binding protein SA 65.0 1.5E+02 0.0033 29.4 20.4 109 23-135 112-225 (881)
369 PF11848 DUF3368: Domain of un 64.7 25 0.00054 20.7 4.6 32 147-179 13-44 (48)
370 PRK11619 lytic murein transgly 64.1 1.5E+02 0.0032 28.9 18.1 85 149-233 254-340 (644)
371 KOG0890 Protein kinase of the 63.7 1.6E+02 0.0034 33.1 12.6 118 106-231 1389-1509(2382)
372 KOG1258 mRNA processing protei 63.6 1.4E+02 0.0029 28.3 17.3 165 58-233 296-469 (577)
373 COG4003 Uncharacterized protei 63.4 28 0.00061 23.1 4.8 36 29-65 36-71 (98)
374 PF04910 Tcf25: Transcriptiona 61.9 1.2E+02 0.0026 27.1 15.0 191 111-343 21-238 (360)
375 KOG4077 Cytochrome c oxidase, 61.7 26 0.00056 25.7 4.9 47 260-306 79-126 (149)
376 KOG4234 TPR repeat-containing 60.8 18 0.00038 29.0 4.3 97 215-332 105-202 (271)
377 PF04910 Tcf25: Transcriptiona 60.5 1.3E+02 0.0027 26.9 10.7 56 31-86 110-166 (360)
378 PF08311 Mad3_BUB1_I: Mad3/BUB 60.3 65 0.0014 23.6 8.4 44 223-290 81-124 (126)
379 KOG4648 Uncharacterized conser 60.2 60 0.0013 28.4 7.6 86 107-204 104-197 (536)
380 KOG1258 mRNA processing protei 59.9 1.6E+02 0.0034 27.9 22.1 171 136-313 297-490 (577)
381 cd00280 TRFH Telomeric Repeat 59.3 87 0.0019 24.8 10.1 68 245-314 85-159 (200)
382 KOG2063 Vacuolar assembly/sort 58.9 2.1E+02 0.0045 29.0 16.8 202 60-278 505-745 (877)
383 KOG2422 Uncharacterized conser 58.2 1.7E+02 0.0036 27.8 10.4 81 264-344 376-465 (665)
384 cd00280 TRFH Telomeric Repeat 57.7 94 0.002 24.6 9.5 47 188-234 85-140 (200)
385 KOG1941 Acetylcholine receptor 56.6 1.3E+02 0.0028 26.8 9.0 138 24-162 122-272 (518)
386 KOG4507 Uncharacterized conser 56.4 34 0.00074 32.2 5.9 150 57-216 569-721 (886)
387 PF08424 NRDE-2: NRDE-2, neces 55.2 1.4E+02 0.0031 26.0 11.8 135 23-168 18-186 (321)
388 TIGR03581 EF_0839 conserved hy 54.2 40 0.00087 27.2 5.3 84 115-199 136-235 (236)
389 COG2909 MalT ATP-dependent tra 54.0 2.4E+02 0.0053 28.3 17.2 189 36-238 427-651 (894)
390 PF08314 Sec39: Secretory path 53.5 1E+02 0.0022 30.5 9.3 175 136-316 432-651 (715)
391 PF06552 TOM20_plant: Plant sp 53.3 52 0.0011 25.9 5.7 79 103-184 31-125 (186)
392 KOG0403 Neoplastic transformat 53.3 72 0.0016 29.0 7.2 60 104-165 513-572 (645)
393 KOG1114 Tripeptidyl peptidase 53.0 2.7E+02 0.0058 28.4 12.8 75 188-286 1212-1288(1304)
394 PF10255 Paf67: RNA polymerase 52.7 55 0.0012 29.5 6.6 108 19-126 70-190 (404)
395 COG3947 Response regulator con 52.5 1.5E+02 0.0033 25.5 14.0 200 116-328 103-343 (361)
396 KOG2063 Vacuolar assembly/sort 52.5 2.1E+02 0.0046 28.9 10.9 114 102-217 506-638 (877)
397 KOG4648 Uncharacterized conser 51.5 67 0.0015 28.2 6.6 51 33-84 106-156 (536)
398 cd08326 CARD_CASP9 Caspase act 51.5 61 0.0013 21.8 5.3 63 43-119 18-80 (84)
399 PF11817 Foie-gras_1: Foie gra 51.1 77 0.0017 26.4 7.1 60 173-232 179-245 (247)
400 PF06753 Bradykinin: Bradykini 50.8 9 0.0002 16.9 0.8 13 340-352 7-19 (19)
401 PF11768 DUF3312: Protein of u 50.6 1.2E+02 0.0025 28.6 8.4 60 103-164 411-472 (545)
402 smart00638 LPD_N Lipoprotein N 50.5 2.3E+02 0.0051 27.0 19.9 231 57-310 308-559 (574)
403 COG0735 Fur Fe2+/Zn2+ uptake r 49.8 1.1E+02 0.0024 23.1 7.6 57 15-75 15-71 (145)
404 KOG1550 Extracellular protein 49.1 2.5E+02 0.0053 26.9 14.7 180 40-235 228-427 (552)
405 KOG4279 Serine/threonine prote 48.8 2.8E+02 0.0061 27.5 10.7 193 3-234 185-395 (1226)
406 PF02847 MA3: MA3 domain; Int 48.7 41 0.00088 23.8 4.5 63 103-168 5-69 (113)
407 COG2909 MalT ATP-dependent tra 47.9 3.1E+02 0.0066 27.6 16.9 199 68-294 424-647 (894)
408 PF10345 Cohesin_load: Cohesin 47.9 2.7E+02 0.0058 27.0 22.3 173 19-198 54-251 (608)
409 KOG2300 Uncharacterized conser 47.8 2.4E+02 0.0051 26.3 15.8 128 103-233 326-473 (629)
410 KOG4567 GTPase-activating prot 47.4 1.9E+02 0.0041 25.1 10.5 82 44-126 263-344 (370)
411 PRK09687 putative lyase; Provi 46.7 1.8E+02 0.004 24.8 20.8 160 57-232 35-201 (280)
412 KOG2659 LisH motif-containing 46.4 85 0.0018 25.7 6.2 122 182-325 3-130 (228)
413 PF09454 Vps23_core: Vps23 cor 46.4 31 0.00068 21.9 3.1 49 23-72 7-55 (65)
414 KOG2034 Vacuolar sorting prote 46.0 3.3E+02 0.0071 27.4 11.1 51 267-324 506-556 (911)
415 cd07153 Fur_like Ferric uptake 45.6 79 0.0017 22.5 5.6 49 29-77 5-53 (116)
416 PF10475 DUF2450: Protein of u 45.6 1.6E+02 0.0034 25.4 8.2 109 106-227 104-219 (291)
417 PF11207 DUF2989: Protein of u 45.6 1.6E+02 0.0035 23.7 14.6 83 179-285 114-198 (203)
418 PF11123 DNA_Packaging_2: DNA 45.3 57 0.0012 21.2 4.0 63 279-341 11-74 (82)
419 COG0735 Fur Fe2+/Zn2+ uptake r 44.8 1.3E+02 0.0029 22.6 7.2 58 128-187 13-70 (145)
420 TIGR01503 MthylAspMut_E methyl 44.7 2.6E+02 0.0055 25.8 9.3 113 115-239 29-168 (480)
421 KOG2581 26S proteasome regulat 44.4 2.4E+02 0.0053 25.5 13.4 132 23-165 123-276 (493)
422 PRK06645 DNA polymerase III su 44.3 2.8E+02 0.0061 26.2 11.0 44 118-163 191-234 (507)
423 PF04190 DUF410: Protein of un 44.0 2E+02 0.0043 24.3 9.5 130 183-330 1-153 (260)
424 PF11817 Foie-gras_1: Foie gra 43.8 1.3E+02 0.0028 25.1 7.3 82 189-291 162-244 (247)
425 PF02184 HAT: HAT (Half-A-TPR) 43.4 23 0.0005 18.8 1.7 23 187-209 2-24 (32)
426 PRK11639 zinc uptake transcrip 42.8 1.6E+02 0.0034 22.9 7.7 60 128-189 18-77 (169)
427 COG5187 RPN7 26S proteasome re 42.5 2.2E+02 0.0048 24.5 11.7 36 277-312 204-241 (412)
428 smart00777 Mad3_BUB1_I Mad3/BU 41.8 1.4E+02 0.003 21.9 8.7 44 153-196 80-123 (125)
429 KOG0890 Protein kinase of the 41.7 5.9E+02 0.013 29.1 18.6 275 29-325 1388-1729(2382)
430 PF09986 DUF2225: Uncharacteri 41.7 1.6E+02 0.0035 23.9 7.3 25 211-235 171-195 (214)
431 PF12862 Apc5: Anaphase-promot 41.5 1.1E+02 0.0024 20.8 5.9 56 110-165 8-70 (94)
432 PF01475 FUR: Ferric uptake re 41.5 82 0.0018 22.6 5.2 50 28-77 11-60 (120)
433 COG5159 RPN6 26S proteasome re 41.4 1.1E+02 0.0024 26.1 6.3 52 177-228 8-68 (421)
434 smart00386 HAT HAT (Half-A-TPR 41.2 48 0.0011 16.5 3.3 29 38-67 1-29 (33)
435 PRK10941 hypothetical protein; 41.1 2.2E+02 0.0049 24.1 8.6 56 141-198 186-241 (269)
436 KOG3807 Predicted membrane pro 41.1 2.5E+02 0.0054 24.7 10.3 48 148-195 287-334 (556)
437 PF11663 Toxin_YhaV: Toxin wit 41.0 38 0.00083 25.1 3.2 33 146-181 105-137 (140)
438 PHA02940 hypothetical protein; 40.2 2.2E+02 0.0047 23.7 9.7 113 61-183 98-215 (315)
439 PF09454 Vps23_core: Vps23 cor 40.0 60 0.0013 20.6 3.6 51 132-184 4-54 (65)
440 KOG3807 Predicted membrane pro 39.9 2.6E+02 0.0057 24.6 9.3 61 106-166 281-341 (556)
441 PF12862 Apc5: Anaphase-promot 39.5 1.2E+02 0.0026 20.6 5.9 23 211-233 47-69 (94)
442 PF15469 Sec5: Exocyst complex 39.3 1.9E+02 0.004 22.7 9.5 58 172-233 57-114 (182)
443 KOG3364 Membrane protein invol 39.1 68 0.0015 24.0 4.2 70 134-203 30-102 (149)
444 smart00544 MA3 Domain in DAP-5 38.9 1.4E+02 0.003 21.1 9.2 63 103-168 5-69 (113)
445 KOG2908 26S proteasome regulat 38.6 2.8E+02 0.006 24.5 12.8 90 103-193 78-178 (380)
446 KOG0687 26S proteasome regulat 38.4 2.8E+02 0.006 24.4 11.6 69 171-239 103-178 (393)
447 PF04762 IKI3: IKI3 family; I 37.9 3.7E+02 0.008 27.7 10.5 127 105-234 699-843 (928)
448 cd07153 Fur_like Ferric uptake 37.0 77 0.0017 22.5 4.4 37 114-151 14-50 (116)
449 cd08332 CARD_CASP2 Caspase act 36.9 1.4E+02 0.0029 20.4 5.7 59 43-115 22-80 (90)
450 PF11768 DUF3312: Protein of u 36.8 3.7E+02 0.008 25.4 9.4 60 175-234 411-473 (545)
451 PRK11639 zinc uptake transcrip 36.8 2E+02 0.0044 22.3 7.1 59 15-77 20-78 (169)
452 KOG4642 Chaperone-dependent E3 36.4 2.6E+02 0.0055 23.4 8.8 113 73-198 24-143 (284)
453 PF07064 RIC1: RIC1; InterPro 36.4 2.6E+02 0.0057 23.6 13.5 27 26-52 84-110 (258)
454 smart00804 TAP_C C-terminal do 35.9 38 0.00081 21.4 2.2 24 113-136 38-61 (63)
455 PF12926 MOZART2: Mitotic-spin 35.8 1.4E+02 0.003 20.2 6.9 43 157-200 29-71 (88)
456 KOG4334 Uncharacterized conser 35.3 51 0.0011 30.1 3.6 90 187-278 462-573 (650)
457 PF11838 ERAP1_C: ERAP1-like C 35.3 2.9E+02 0.0063 23.8 12.2 111 116-230 146-262 (324)
458 KOG2422 Uncharacterized conser 35.0 3.2E+02 0.007 26.0 8.6 56 31-86 349-405 (665)
459 PF14669 Asp_Glu_race_2: Putat 34.8 2.4E+02 0.0052 22.6 12.5 55 176-230 136-206 (233)
460 cd08315 Death_TRAILR_DR4_DR5 D 34.2 1.4E+02 0.003 20.7 5.0 48 188-235 47-94 (96)
461 PF11663 Toxin_YhaV: Toxin wit 34.1 38 0.00083 25.1 2.3 33 35-69 106-138 (140)
462 smart00638 LPD_N Lipoprotein N 33.6 4.3E+02 0.0094 25.2 22.6 198 23-233 309-524 (574)
463 KOG1550 Extracellular protein 33.1 4.4E+02 0.0096 25.2 13.6 138 116-258 228-393 (552)
464 PF01475 FUR: Ferric uptake re 33.1 1.1E+02 0.0025 21.9 4.8 46 141-187 12-57 (120)
465 PF14853 Fis1_TPR_C: Fis1 C-te 33.0 1.1E+02 0.0023 18.5 3.8 17 182-198 11-27 (53)
466 PRK14963 DNA polymerase III su 32.9 4.3E+02 0.0093 24.9 11.6 29 210-239 247-275 (504)
467 PF07575 Nucleopor_Nup85: Nup8 32.9 1.2E+02 0.0027 28.9 6.2 186 58-271 371-559 (566)
468 PRK14956 DNA polymerase III su 32.4 4.3E+02 0.0092 24.8 11.1 36 204-239 247-282 (484)
469 COG2178 Predicted RNA-binding 31.5 2.7E+02 0.0059 22.3 8.1 101 177-294 34-150 (204)
470 PRK08691 DNA polymerase III su 31.4 5.3E+02 0.011 25.6 11.5 46 117-164 181-226 (709)
471 PF04124 Dor1: Dor1-like famil 30.5 2.4E+02 0.0053 24.8 7.2 35 177-211 111-148 (338)
472 COG5187 RPN7 26S proteasome re 30.4 3.6E+02 0.0078 23.3 11.9 121 75-200 95-220 (412)
473 cd08789 CARD_IPS-1_RIG-I Caspa 30.2 1.6E+02 0.0034 19.8 4.6 51 24-79 32-82 (84)
474 PRK09857 putative transposase; 30.2 2.5E+02 0.0054 24.2 7.0 65 175-239 209-274 (292)
475 PHA00425 DNA packaging protein 29.8 1.7E+02 0.0036 19.4 4.3 58 280-337 14-72 (88)
476 KOG1463 26S proteasome regulat 29.5 4E+02 0.0087 23.6 9.4 124 109-233 13-156 (411)
477 cd07229 Pat_TGL3_like Triacylg 29.2 3.6E+02 0.0079 24.4 8.0 42 2-48 100-141 (391)
478 PF02847 MA3: MA3 domain; Int 28.6 2.1E+02 0.0046 20.1 9.8 60 177-236 7-68 (113)
479 PF03745 DUF309: Domain of unk 28.5 1.5E+02 0.0033 18.5 5.2 14 113-126 12-25 (62)
480 COG5108 RPO41 Mitochondrial DN 28.3 3.3E+02 0.0072 26.6 7.7 76 210-309 33-114 (1117)
481 KOG0686 COP9 signalosome, subu 28.3 4.6E+02 0.01 23.9 13.2 179 26-212 152-351 (466)
482 PF01347 Vitellogenin_N: Lipop 28.1 5.5E+02 0.012 24.8 13.5 202 26-232 380-618 (618)
483 KOG0376 Serine-threonine phosp 27.3 1.7E+02 0.0038 26.9 5.6 103 108-215 12-115 (476)
484 KOG3636 Uncharacterized conser 27.0 4.9E+02 0.011 23.9 8.2 87 128-216 175-271 (669)
485 PLN03192 Voltage-dependent pot 26.8 6.8E+02 0.015 25.4 13.2 112 68-197 531-644 (823)
486 COG5108 RPO41 Mitochondrial DN 26.5 3.7E+02 0.0081 26.2 7.7 46 141-187 33-80 (1117)
487 KOG2297 Predicted translation 26.4 4.4E+02 0.0095 23.0 10.5 21 171-191 320-340 (412)
488 PF08424 NRDE-2: NRDE-2, neces 26.2 4.4E+02 0.0096 23.0 15.2 139 116-258 47-209 (321)
489 PRK09462 fur ferric uptake reg 26.0 2.9E+02 0.0062 20.8 7.1 58 15-76 11-69 (148)
490 PF13934 ELYS: Nuclear pore co 26.0 3.7E+02 0.0081 22.1 13.5 71 141-216 113-183 (226)
491 TIGR03581 EF_0839 conserved hy 25.8 79 0.0017 25.6 2.9 64 23-86 162-235 (236)
492 COG1775 HgdB Benzoyl-CoA reduc 25.7 3.1E+02 0.0068 24.4 6.7 26 174-199 161-186 (379)
493 TIGR01987 HI0074 nucleotidyltr 25.7 1.9E+02 0.0042 21.1 4.8 58 116-176 38-96 (123)
494 PF10345 Cohesin_load: Cohesin 25.7 6.2E+02 0.013 24.5 17.6 89 111-200 372-481 (608)
495 smart00777 Mad3_BUB1_I Mad3/BU 25.3 2.8E+02 0.006 20.4 8.7 45 222-290 80-124 (125)
496 PF09797 NatB_MDM20: N-acetylt 24.9 5E+02 0.011 23.1 8.6 31 106-137 223-253 (365)
497 COG4259 Uncharacterized protei 24.8 2.5E+02 0.0055 19.7 5.8 52 156-208 57-108 (121)
498 PF02607 B12-binding_2: B12 bi 24.6 1.7E+02 0.0036 19.0 4.1 40 34-73 11-50 (79)
499 KOG0508 Ankyrin repeat protein 24.6 2.9E+02 0.0063 25.6 6.4 108 33-160 90-204 (615)
500 COG4715 Uncharacterized conser 24.2 6.3E+02 0.014 24.1 16.4 111 103-219 306-417 (587)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9e-52 Score=398.02 Aligned_cols=290 Identities=16% Similarity=0.215 Sum_probs=227.8
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC----CCchhHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE----RNLVTWNVIIT 98 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~~i~ 98 (352)
|..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ ||..+
T Consensus 436 d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvT------ 509 (1060)
T PLN03218 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHT------ 509 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHH------
Confidence 99999999999999999999999999999999999999999999999999999999999999984 88888
Q ss_pred HHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHh--cCCCCCchhhHH
Q 042593 99 GLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK--RGFNAFDIHVSN 176 (352)
Q Consensus 99 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ 176 (352)
|+.+|.+|++.|++++|.++|++| ...|+.||..||+.+|.+|++.|++++|.+++++|.+ .|+.| +..+|+
T Consensus 510 ----ynaLI~gy~k~G~~eeAl~lf~~M-~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTyn 583 (1060)
T PLN03218 510 ----FGALIDGCARAGQVAKAFGAYGIM-RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVG 583 (1060)
T ss_pred ----HHHHHHHHHHCcCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHH
Confidence 777777777777777777777777 6667777777777777777777777777777777765 45666 777777
Q ss_pred HHHHHHHhhCChHHHHHHHHHhccC--CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh----------
Q 042593 177 CLIDTYAKCGCIFSASKLFEDTSVD--RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI---------- 244 (352)
Q Consensus 177 ~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---------- 244 (352)
++|.+|++.|++++|.++|++|.+. .|+..+||++|.+|++.|++++|.++|++|.+.|+.||..+|.
T Consensus 584 aLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G 663 (1060)
T PLN03218 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 7777777777777777777777655 5677777777777777777777777777777777777776666
Q ss_pred -hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC--CCCchhhHHHHHHHHhcccccCccccc
Q 042593 245 -GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ--ITNVVVWRTGFLRLLINSYFFSPITLN 321 (352)
Q Consensus 245 -~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~ 321 (352)
.++|.++++.|.+. |+.||..+|+.||.+|+++|++++|.++|++|... .||..+||+||.+|++.|++++|++++
T Consensus 664 ~~eeA~~l~~eM~k~-G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf 742 (1060)
T PLN03218 664 DLDKAFEILQDARKQ-GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVL 742 (1060)
T ss_pred CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 67777777777776 77777777777777777777777777777777544 677777777777777777777777777
Q ss_pred ccch
Q 042593 322 SQRL 325 (352)
Q Consensus 322 ~~~~ 325 (352)
.+|.
T Consensus 743 ~eM~ 746 (1060)
T PLN03218 743 SEMK 746 (1060)
T ss_pred HHHH
Confidence 7664
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.5e-51 Score=393.23 Aligned_cols=305 Identities=17% Similarity=0.183 Sum_probs=293.4
Q ss_pred hhhHHHHHHhhccCCCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHH
Q 042593 2 LVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81 (352)
Q Consensus 2 ~~~~~M~~~~~~~~g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (352)
++|+.|.+ .|+.| |..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++
T Consensus 458 ~lf~~M~~-----~Gl~p---D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~l 529 (1060)
T PLN03218 458 RVLRLVQE-----AGLKA---DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGA 529 (1060)
T ss_pred HHHHHHHH-----cCCCC---CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 68999999 99999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCC----CCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhc-cCCCCChhhHHHHHHHHHhCCChhhHH
Q 042593 82 FDELPE----RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC-EYTEPSEITILAVLPAIWKNGEVRNCQ 156 (352)
Q Consensus 82 ~~~m~~----~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~p~~~t~~~ll~~~~~~~~~~~a~ 156 (352)
|++|.+ ||..+ ||.+|.+|++.|++++|.++|++|... .|+.||..||++++.+|++.|++++|.
T Consensus 530 f~~M~~~Gv~PD~vT----------YnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 530 YGIMRSKNVKPDRVV----------FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred HHHHHHcCCCCCHHH----------HHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999964 88888 999999999999999999999999432 678999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC--CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 157 LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD--RKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
++|++|.+.|+.| +..+|+.+|.+|++.|++++|.++|++|... .||..+|+++|.+|++.|++++|.+++++|.+.
T Consensus 600 elf~~M~e~gi~p-~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 600 EVYQMIHEYNIKG-TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999999999 9999999999999999999999999999876 799999999999999999999999999999999
Q ss_pred CCCCCcchhh-----------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC--CCCchhh
Q 042593 235 GLKPNRSWRI-----------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ--ITNVVVW 301 (352)
Q Consensus 235 ~~~p~~~~~~-----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~ 301 (352)
|+.||..+|. .++|.++|++|... |+.||..+|+.||.+|++.|++++|.++|++|... .||..+|
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9999999988 89999999999998 99999999999999999999999999999999876 8999999
Q ss_pred HHHHHHHHhcccccCcccccccchh
Q 042593 302 RTGFLRLLINSYFFSPITLNSQRLF 326 (352)
Q Consensus 302 ~~li~~~~~~g~~~~a~~~~~~~~~ 326 (352)
++++.+|.+.|++++|.+++.++..
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999864
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1e-50 Score=386.63 Aligned_cols=322 Identities=27% Similarity=0.470 Sum_probs=291.4
Q ss_pred hhhHHHHHHhhccCCCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHH
Q 042593 2 LVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81 (352)
Q Consensus 2 ~~~~~M~~~~~~~~g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (352)
++|++|.+ .|+.| |..+|+.++.+|++.|+.+.+.+++..+.+.|+.||..+||+||++|++.|++++|.++
T Consensus 210 ~lf~~M~~-----~g~~p---~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~v 281 (697)
T PLN03081 210 ALFREMWE-----DGSDA---EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCV 281 (697)
T ss_pred HHHHHHHH-----hCCCC---ChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHH
Confidence 56777877 77778 88888888888888888888888888888888888889999999999999999999999
Q ss_pred hccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHH
Q 042593 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161 (352)
Q Consensus 82 ~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 161 (352)
|++|.++|.++ ||.+|.+|++.|++++|+++|++| ...|+.||..||++++.+|++.|++++|.++++.
T Consensus 282 f~~m~~~~~vt----------~n~li~~y~~~g~~~eA~~lf~~M-~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~ 350 (697)
T PLN03081 282 FDGMPEKTTVA----------WNSMLAGYALHGYSEEALCLYYEM-RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAG 350 (697)
T ss_pred HHhCCCCChhH----------HHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 99999999998 999999999999999999999999 8899999999999999999999999999999999
Q ss_pred HHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcc
Q 042593 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241 (352)
Q Consensus 162 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 241 (352)
|.+.|+.+ +..+|++||++|++.|++++|.++|++|. .||+.+||+||.+|+++|+.++|.++|++|.+.|+.||..
T Consensus 351 m~~~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~--~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~ 427 (697)
T PLN03081 351 LIRTGFPL-DIVANTALVDLYSKWGRMEDARNVFDRMP--RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427 (697)
T ss_pred HHHhCCCC-CeeehHHHHHHHHHCCCHHHHHHHHHhCC--CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 99999999 99999999999999999999999999994 6899999999999999999999999999999999999999
Q ss_pred hhh-----------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHHHh
Q 042593 242 WRI-----------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLI 310 (352)
Q Consensus 242 ~~~-----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~ 310 (352)
||. .++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|... |+..+|++|+.+|..
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~-p~~~~~~~Ll~a~~~ 506 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK-PTVNMWAALLTACRI 506 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH
Confidence 998 99999999999987799999999999999999999999999999998765 999999999999999
Q ss_pred cccccCcccccccchhhhhhHHHHhhhhhcccccccccCCCC
Q 042593 311 NSYFFSPITLNSQRLFFFPAALYALTQILGFKPLFRKESSDG 352 (352)
Q Consensus 311 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (352)
+|+++.|..+.++.+...|.. ...|+.+...|++.|
T Consensus 507 ~g~~~~a~~~~~~l~~~~p~~------~~~y~~L~~~y~~~G 542 (697)
T PLN03081 507 HKNLELGRLAAEKLYGMGPEK------LNNYVVLLNLYNSSG 542 (697)
T ss_pred cCCcHHHHHHHHHHhCCCCCC------CcchHHHHHHHHhCC
Confidence 999999988877765443321 233444555555443
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.6e-50 Score=385.29 Aligned_cols=301 Identities=27% Similarity=0.397 Sum_probs=290.1
Q ss_pred ChhhHHHHHHhhccC-CCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHH
Q 042593 1 FLVYKQLQQIYIHSH-SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79 (352)
Q Consensus 1 ~~~~~~M~~~~~~~~-g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 79 (352)
+++|++|.. . +..| |..+|+.++.+|++.++++.+.+++..|.+.|+.||..+||.|+++|++.|++++|.
T Consensus 107 l~~f~~m~~-----~~~~~~---~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 178 (697)
T PLN03081 107 LELFEILEA-----GCPFTL---PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178 (697)
T ss_pred HHHHHHHHh-----cCCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHH
Confidence 368999987 4 4678 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHH
Q 042593 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159 (352)
Q Consensus 80 ~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 159 (352)
++|++|.+||..+ ||.++.+|++.|++++|+++|++| ...|+.||..||+.++.+|++.|+.+.+.+++
T Consensus 179 ~lf~~m~~~~~~t----------~n~li~~~~~~g~~~~A~~lf~~M-~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~ 247 (697)
T PLN03081 179 RLFDEMPERNLAS----------WGTIIGGLVDAGNYREAFALFREM-WEDGSDAEPRTFVVMLRASAGLGSARAGQQLH 247 (697)
T ss_pred HHHhcCCCCCeee----------HHHHHHHHHHCcCHHHHHHHHHHH-HHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence 9999999999999 999999999999999999999999 78899999999999999999999999999999
Q ss_pred HHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Q 042593 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 239 (352)
..+.+.|+.+ +..+|++||++|++.|++++|.++|++| ..+|+.+||++|.+|++.|+.++|.++|++|.+.|+.||
T Consensus 248 ~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m--~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 248 CCVLKTGVVG-DTFVSCALIDMYSKCGDIEDARCVFDGM--PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHhCCCc-cceeHHHHHHHHHHCCCHHHHHHHHHhC--CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 9999999999 9999999999999999999999999999 568999999999999999999999999999999999999
Q ss_pred cchhh-----------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHH
Q 042593 240 RSWRI-----------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRL 308 (352)
Q Consensus 240 ~~~~~-----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~ 308 (352)
..||. .++|.++++.|.+. |+.||..+|+.||++|+++|++++|.++|++|... |..+||+||.+|
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~--d~~t~n~lI~~y 401 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK--NLISWNALIAGY 401 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC--CeeeHHHHHHHH
Confidence 99998 89999999999999 99999999999999999999999999999999864 999999999999
Q ss_pred HhcccccCcccccccchh
Q 042593 309 LINSYFFSPITLNSQRLF 326 (352)
Q Consensus 309 ~~~g~~~~a~~~~~~~~~ 326 (352)
+++|+.++|++++.+|..
T Consensus 402 ~~~G~~~~A~~lf~~M~~ 419 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIA 419 (697)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999999863
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.5e-49 Score=386.97 Aligned_cols=301 Identities=28% Similarity=0.483 Sum_probs=290.5
Q ss_pred ChhhHHHHHHhhccCCCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHH
Q 042593 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80 (352)
Q Consensus 1 ~~~~~~M~~~~~~~~g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 80 (352)
+++|++|.+ .|+.| |..||+.++++|+..++++.+.+++..|.+.|+.||..+||+||.+|++.|++++|.+
T Consensus 172 ~~~f~~M~~-----~g~~P---d~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 243 (857)
T PLN03077 172 LCLYHRMLW-----AGVRP---DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARL 243 (857)
T ss_pred HHHHHHHHH-----cCCCC---ChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHH
Confidence 368899998 89999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHH
Q 042593 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHG 160 (352)
Q Consensus 81 ~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 160 (352)
+|++|.+||.++ ||.+|.+|++.|++++|+++|++| ...|+.||..||+.++.+|++.|+.+.+.+++.
T Consensus 244 lf~~m~~~d~~s----------~n~li~~~~~~g~~~eAl~lf~~M-~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~ 312 (857)
T PLN03077 244 VFDRMPRRDCIS----------WNAMISGYFENGECLEGLELFFTM-RELSVDPDLMTITSVISACELLGDERLGREMHG 312 (857)
T ss_pred HHhcCCCCCcch----------hHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Confidence 999999999999 999999999999999999999999 888999999999999999999999999999999
Q ss_pred HHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCc
Q 042593 161 YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 240 (352)
.+.+.|+.| +..+|+.||.+|++.|++++|.++|++| ..||+.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 313 ~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m--~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~ 389 (857)
T PLN03077 313 YVVKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRM--ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389 (857)
T ss_pred HHHHhCCcc-chHHHHHHHHHHHhcCCHHHHHHHHhhC--CCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc
Confidence 999999999 9999999999999999999999999999 4789999999999999999999999999999999999999
Q ss_pred chhh-----------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHHH
Q 042593 241 SWRI-----------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLL 309 (352)
Q Consensus 241 ~~~~-----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~ 309 (352)
.|+. .+.+.++++.|.+. |+.|+..+|+.||++|+++|++++|.++|++|.+. |..+|+++|.+|.
T Consensus 390 ~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~--d~vs~~~mi~~~~ 466 (857)
T PLN03077 390 ITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK--DVISWTSIIAGLR 466 (857)
T ss_pred eeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC--CeeeHHHHHHHHH
Confidence 9998 89999999999999 99999999999999999999999999999999876 9999999999999
Q ss_pred hcccccCcccccccchh
Q 042593 310 INSYFFSPITLNSQRLF 326 (352)
Q Consensus 310 ~~g~~~~a~~~~~~~~~ 326 (352)
+.|+.++|+.++.++..
T Consensus 467 ~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 467 LNNRCFEALIFFRQMLL 483 (857)
T ss_pred HCCCHHHHHHHHHHHHh
Confidence 99999999999999864
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.8e-49 Score=381.19 Aligned_cols=298 Identities=28% Similarity=0.433 Sum_probs=285.3
Q ss_pred ChhhHHHHHHhhccCCCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHH
Q 042593 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSK 80 (352)
Q Consensus 1 ~~~~~~M~~~~~~~~g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 80 (352)
+++|++|.+ .|+.| |..||+.++.+|++.|+++.+.+++..|.+.|+.||..+||.||.+|++.|++++|.+
T Consensus 273 l~lf~~M~~-----~g~~P---d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~ 344 (857)
T PLN03077 273 LELFFTMRE-----LSVDP---DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEK 344 (857)
T ss_pred HHHHHHHHH-----cCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHH
Confidence 368999999 89999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHH
Q 042593 81 LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHG 160 (352)
Q Consensus 81 ~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 160 (352)
+|++|.+||..+ ||.+|.+|++.|++++|+++|++| ...|+.||..||+.++.+|++.|+++.|.++++
T Consensus 345 vf~~m~~~d~~s----------~n~li~~~~~~g~~~~A~~lf~~M-~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~ 413 (857)
T PLN03077 345 VFSRMETKDAVS----------WTAMISGYEKNGLPDKALETYALM-EQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413 (857)
T ss_pred HHhhCCCCCeee----------HHHHHHHHHhCCCHHHHHHHHHHH-HHhCCCCCceeHHHHHHHHhccchHHHHHHHHH
Confidence 999999999999 999999999999999999999999 888999999999999999999999999999999
Q ss_pred HHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCc
Q 042593 161 YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 240 (352)
.+.+.|+.+ +..+|++||++|++.|++++|.++|++| ..+|+.+||++|.+|+++|+.++|..+|++|.. ++.||.
T Consensus 414 ~~~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~vf~~m--~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~ 489 (857)
T PLN03077 414 LAERKGLIS-YVVVANALIEMYSKCKCIDKALEVFHNI--PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNS 489 (857)
T ss_pred HHHHhCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCH
Confidence 999999999 9999999999999999999999999999 468999999999999999999999999999986 699999
Q ss_pred chhh-----------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHHH
Q 042593 241 SWRI-----------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLL 309 (352)
Q Consensus 241 ~~~~-----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~ 309 (352)
.|+. .+.+.+++..+.+. |+.+|..++++||++|+++|++++|.++|+++ . +|..+||++|.+|+
T Consensus 490 ~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~--~d~~s~n~lI~~~~ 565 (857)
T PLN03077 490 VTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-E--KDVVSWNILLTGYV 565 (857)
T ss_pred hHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc-C--CChhhHHHHHHHHH
Confidence 9998 78899999999998 99999999999999999999999999999998 3 59999999999999
Q ss_pred hcccccCcccccccch
Q 042593 310 INSYFFSPITLNSQRL 325 (352)
Q Consensus 310 ~~g~~~~a~~~~~~~~ 325 (352)
++|+.++|++++.+|.
T Consensus 566 ~~G~~~~A~~lf~~M~ 581 (857)
T PLN03077 566 AHGKGSMAVELFNRMV 581 (857)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 9999999999999886
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=1.7e-19 Score=161.57 Aligned_cols=289 Identities=16% Similarity=0.116 Sum_probs=222.5
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC-CCchh-HHHHHHHHHhHH
Q 042593 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE-RNLVT-WNVIITGLVKWT 104 (352)
Q Consensus 27 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~-~~~~i~~~~~~~ 104 (352)
.......+...|++++|...|+.+.+.+ +.+..++..+...+...|++++|..+++.+.. ++... ..... +.
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~-----~~ 111 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLA-----LQ 111 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHH-----HH
Confidence 3333445667889999999999998875 45667888899999999999999999988765 32211 11111 78
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCc---hhhHHHHHHH
Q 042593 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD---IHVSNCLIDT 181 (352)
Q Consensus 105 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~ 181 (352)
.+...|.+.|++++|..+|+++ .... +++..++..++..+.+.|++++|...++.+.+.+..+.. ...+..+...
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~-l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 189 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQL-VDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ 189 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH-HcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 8888999999999999999999 4332 346778899999999999999999999998877644311 2245667788
Q ss_pred HHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh-----------hHhHH
Q 042593 182 YAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI-----------GEEGL 249 (352)
Q Consensus 182 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-----------~~~a~ 249 (352)
+.+.|++++|.+.|+++.+..| +...+..+...+.+.|++++|.+.++++.+.+......++. .++|.
T Consensus 190 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 190 ALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL 269 (389)
T ss_pred HHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence 8899999999999998876544 45677788889999999999999999988753222111111 88888
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHHHh---cccccCcccccccchh
Q 042593 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLI---NSYFFSPITLNSQRLF 326 (352)
Q Consensus 250 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~ 326 (352)
..++++.+. .|+...+..++..+.+.|++++|..+++++....|+..+++.++..+.. .|+..+++.++++++.
T Consensus 270 ~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 270 EFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 888888765 4666777899999999999999999999887667888899988888775 5588899988887764
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=1.4e-18 Score=155.73 Aligned_cols=253 Identities=10% Similarity=0.002 Sum_probs=204.8
Q ss_pred HHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC---hhhHHHH
Q 042593 66 GDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS---EITILAV 142 (352)
Q Consensus 66 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~t~~~l 142 (352)
...+...|++++|...|+++.+.++....+ +..+...+...|++++|..+++.+.. .+..++ ..++..+
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~-------~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~~~~~L 113 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVEL-------HLALGNLFRRRGEVDRAIRIHQNLLS-RPDLTREQRLLALQEL 113 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHH-------HHHHHHHHHHcCcHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH
Confidence 345668899999999999998744333222 88899999999999999999999944 332222 2468889
Q ss_pred HHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCC------HhhHHHHHHHHH
Q 042593 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN------LVSWTTIISGFA 216 (352)
Q Consensus 143 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~li~~~~ 216 (352)
...+.+.|+++.|..+++++.+.... +..+++.++.++.+.|++++|.+.++.+....|+ ...+..+...+.
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLVDEGDF--AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHHcCCcc--hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 99999999999999999999876432 7789999999999999999999999998765432 224567788899
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCcc-hhh-----------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHH
Q 042593 217 MHGMGKEAVENFERMQKVGLKPNRS-WRI-----------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284 (352)
Q Consensus 217 ~~~~~~~a~~~~~~m~~~~~~p~~~-~~~-----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 284 (352)
+.|++++|...++++.+.. |+.. .+. .++|..+++++... +......++..++.+|.+.|+.++|
T Consensus 192 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 192 ARGDLDAARALLKKALAAD--PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred hCCCHHHHHHHHHHHHhHC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998754 3322 111 89999999999875 3222346788999999999999999
Q ss_pred HHHHhcCCCCCCCchhhHHHHHHHHhcccccCcccccccchhhhhhH
Q 042593 285 EEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAA 331 (352)
Q Consensus 285 ~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 331 (352)
...++++....|+...+..++..+...|++++|+..+.+.+...|..
T Consensus 269 ~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 269 LEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSL 315 (389)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH
Confidence 99999987666677778999999999999999999999998877755
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.83 E-value=4.5e-18 Score=168.12 Aligned_cols=299 Identities=12% Similarity=0.012 Sum_probs=184.4
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--C-CchhHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--R-NLVTWNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~~i~~ 99 (352)
+..++..+...+...|++++|.+.|+.+.+.. +.+...+..+...+...|++++|.+.|+++.+ | +..++..+...
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 542 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGL 542 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 55567777777777777777777777666543 33445555566666666666666666666543 1 22222211111
Q ss_pred HH------------------------hHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhH
Q 042593 100 LV------------------------KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNC 155 (352)
Q Consensus 100 ~~------------------------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a 155 (352)
+. .+..+...+...|++++|..+++++ ... .+.+..+|..+..++.+.|++++|
T Consensus 543 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~-~~~~~~~~~~l~~~~~~~~~~~~A 620 (899)
T TIGR02917 543 YLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEA-ADA-APDSPEAWLMLGRAQLAAGDLNKA 620 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHH-HHc-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 11 2455666666667777777777666 322 133455677777777777777777
Q ss_pred HHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 156 QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
...++.+.+.... +...+..+..++.+.|++++|.+.|+++....| +..++..+...+...|++++|.++++.+.+.
T Consensus 621 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 698 (899)
T TIGR02917 621 VSSFKKLLALQPD--SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ 698 (899)
T ss_pred HHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777777665432 556666777777777777777777777655533 4666677777777777777777777777665
Q ss_pred CCCCCcchhh----------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHH
Q 042593 235 GLKPNRSWRI----------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRT 303 (352)
Q Consensus 235 ~~~p~~~~~~----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ 303 (352)
+......... .++|...++++... .|+..++..+..++.+.|+.++|.+.++.+... +.+..++..
T Consensus 699 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 775 (899)
T TIGR02917 699 HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR---APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTA 775 (899)
T ss_pred CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4221111111 66677777776654 244456666677777777777777777666555 555666677
Q ss_pred HHHHHHhcccccCcccccccchhhhh
Q 042593 304 GFLRLLINSYFFSPITLNSQRLFFFP 329 (352)
Q Consensus 304 li~~~~~~g~~~~a~~~~~~~~~~~~ 329 (352)
+...|...|++++|++.+.+.+...|
T Consensus 776 la~~~~~~g~~~~A~~~~~~~~~~~p 801 (899)
T TIGR02917 776 LAELYLAQKDYDKAIKHYRTVVKKAP 801 (899)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCC
Confidence 77777777777777777777665544
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.82 E-value=7e-18 Score=166.75 Aligned_cols=282 Identities=12% Similarity=0.050 Sum_probs=144.8
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--C-CchhHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--R-NLVTWNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~~i~~ 99 (352)
+..++..+...+.+.|+.++|..+++.+.+.+ +.+...+..++..|.+.|++++|..+++++.+ | +...
T Consensus 532 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------- 603 (899)
T TIGR02917 532 NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEA------- 603 (899)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH-------
Confidence 45566666666666666666666666665544 34455556666666666666666666666543 1 2223
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHH
Q 042593 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179 (352)
Q Consensus 100 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 179 (352)
|..+..++...|++++|...|+++.... +.+...+..+..++.+.|++++|..+++.+.+.... +...+..+.
T Consensus 604 ---~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~ 676 (899)
T TIGR02917 604 ---WLMLGRAQLAAGDLNKAVSSFKKLLALQ--PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD--NTEAQIGLA 676 (899)
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHH
Confidence 5555555666666666666666552211 123334555555555566666666666555544322 445555555
Q ss_pred HHHHhhCChHHHHHHHHHhccCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh-----------hHh
Q 042593 180 DTYAKCGCIFSASKLFEDTSVDR-KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI-----------GEE 247 (352)
Q Consensus 180 ~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-----------~~~ 247 (352)
..+...|++++|.++++.+.... .+...+..+...+...|++++|...|+++.+.+..+ .+.. .++
T Consensus 677 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~ 754 (899)
T TIGR02917 677 QLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QNAIKLHRALLASGNTAE 754 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hHHHHHHHHHHHCCCHHH
Confidence 55555555555555555554432 234445555555555555555555555555443222 1111 444
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCcccccccc
Q 042593 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQR 324 (352)
Q Consensus 248 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 324 (352)
|...++++.+. .+.+...+..+...|.+.|+.++|.+.|+++... +.+..+++.+...+...|+ .+|+..+.+.
T Consensus 755 A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~ 829 (899)
T TIGR02917 755 AVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKA 829 (899)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 44444444442 2223444444444455555555555555444433 3344444444444444444 3344444433
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.73 E-value=3.2e-15 Score=141.32 Aligned_cols=288 Identities=10% Similarity=-0.010 Sum_probs=205.6
Q ss_pred cccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CC-chhHHHHHHHH
Q 042593 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RN-LVTWNVIITGL 100 (352)
Q Consensus 24 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~~i~~~ 100 (352)
...+..++.+....|+++.|...++.+.+.. |.+...+..+...+...|++++|...+++..+ |+ ...
T Consensus 76 ~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a-------- 146 (656)
T PRK15174 76 RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQI-------- 146 (656)
T ss_pred hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH--------
Confidence 4445556666677888888888888888765 45667777888888888888888888888765 43 233
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh-hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHH
Q 042593 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI-TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179 (352)
Q Consensus 101 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 179 (352)
+..+...+...|++++|...+.++.... |+.. .+..+ ..+.+.|++++|...++.+.+....+ +...+..+.
T Consensus 147 --~~~la~~l~~~g~~~eA~~~~~~~~~~~---P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~-~~~~~~~l~ 219 (656)
T PRK15174 147 --FALHLRTLVLMDKELQAISLARTQAQEV---PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALE-RQESAGLAV 219 (656)
T ss_pred --HHHHHHHHHHCCChHHHHHHHHHHHHhC---CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCc-chhHHHHHH
Confidence 7777888888888888888888773322 2222 23222 34677888888888888877664333 444555567
Q ss_pred HHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHH----HHHHHHHHHhcCCCCCcchhh----------
Q 042593 180 DTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKE----AVENFERMQKVGLKPNRSWRI---------- 244 (352)
Q Consensus 180 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~---------- 244 (352)
.++.+.|++++|...++......| +...+..+...+...|++++ |...+++..+. .|+.....
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~ 297 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRT 297 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHC
Confidence 788888899999888888766644 56777788888888888875 78888888774 45533222
Q ss_pred --hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchh-hHHHHHHHHhcccccCccccc
Q 042593 245 --GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVV-WRTGFLRLLINSYFFSPITLN 321 (352)
Q Consensus 245 --~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~ 321 (352)
.++|...+++.... . +-+...+..+..++.+.|++++|...++.+....|+... +..+...+...|++++|+..+
T Consensus 298 g~~~eA~~~l~~al~l-~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l 375 (656)
T PRK15174 298 GQNEKAIPLLQQSLAT-H-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVF 375 (656)
T ss_pred CCHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 78888888887764 2 224556777888888999999999998887766444433 334566788899999999888
Q ss_pred ccchhhhhhH
Q 042593 322 SQRLFFFPAA 331 (352)
Q Consensus 322 ~~~~~~~~~~ 331 (352)
.+.+...|..
T Consensus 376 ~~al~~~P~~ 385 (656)
T PRK15174 376 EHYIQARASH 385 (656)
T ss_pred HHHHHhChhh
Confidence 8877655543
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.71 E-value=6.1e-16 Score=135.91 Aligned_cols=295 Identities=12% Similarity=0.035 Sum_probs=200.0
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGL 100 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~~ 100 (352)
-..+|..+.+.+-..|+++.|+.+++.+++.. +-....|..+..++...|+.+.|...|.+..+ |+.....+-+.-+
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHH
Confidence 46789999999999999999999999999876 45678999999999999999999999988775 4333222111111
Q ss_pred H-------------------------hHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh-hhHHHHHHHHHhCCChhh
Q 042593 101 V-------------------------KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE-ITILAVLPAIWKNGEVRN 154 (352)
Q Consensus 101 ~-------------------------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~t~~~ll~~~~~~~~~~~ 154 (352)
. .|+.|...+-..|+.-.|+..|++..+ +.|+- ..|-.+.+.|...+.++.
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcchH
Confidence 1 577777777778888888888887744 34443 367777777777777777
Q ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 155 CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN-LVSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 155 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
|...|.+..... |....++..+...|-..|+++.|++.+++.....|+ ...|+.|..++-..|++.+|++.|+....
T Consensus 271 Avs~Y~rAl~lr--pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 271 AVSCYLRALNLR--PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHhcC--CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 777777665543 325666666666777777777777777777666665 56677777777777777777777777666
Q ss_pred cCCCCCcchhh----------hHhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhh
Q 042593 234 VGLKPNRSWRI----------GEEGLKFFDKMVEECEVLPD-IKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVW 301 (352)
Q Consensus 234 ~~~~p~~~~~~----------~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~ 301 (352)
....--....+ .++|..+|.+..+- .|. ....+.|...|-.+|+.++|...+++..+. +.-..++
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v---~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~ 425 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV---FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADAL 425 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh---ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHH
Confidence 43222122222 56666666665532 232 345566666666666666666666666555 2233466
Q ss_pred HHHHHHHHhcccccCcccccccchh
Q 042593 302 RTGFLRLLINSYFFSPITLNSQRLF 326 (352)
Q Consensus 302 ~~li~~~~~~g~~~~a~~~~~~~~~ 326 (352)
+.+...|-..|+...|++...+++.
T Consensus 426 ~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 426 SNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred HhcchHHHHhhhHHHHHHHHHHHHh
Confidence 6666666666666666666666554
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.66 E-value=7.7e-14 Score=132.00 Aligned_cols=287 Identities=8% Similarity=-0.093 Sum_probs=227.3
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CC-chhHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RN-LVTWNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~~i~~ 99 (352)
+..-...++..+.+.|+++.|+.+++...... +-+......++.+....|++++|...|+++.+ |+ ...
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a------- 112 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPED------- 112 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHH-------
Confidence 44556677888999999999999999998876 33455666677788889999999999999876 43 333
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHH
Q 042593 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS-EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178 (352)
Q Consensus 100 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 178 (352)
|..+...+.+.|++++|...+++... +.|+ ...+..+...+...|+.++|...++.+...... +...+..+
T Consensus 113 ---~~~la~~l~~~g~~~~Ai~~l~~Al~---l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~--~~~a~~~~ 184 (656)
T PRK15174 113 ---VLLVASVLLKSKQYATVADLAEQAWL---AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP--RGDMIATC 184 (656)
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC--CHHHHHHH
Confidence 77888899999999999999999944 2344 557888999999999999999999988776554 33444333
Q ss_pred HHHHHhhCChHHHHHHHHHhccCC--CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh------------
Q 042593 179 IDTYAKCGCIFSASKLFEDTSVDR--KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI------------ 244 (352)
Q Consensus 179 i~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------ 244 (352)
..+...|++++|...++.+.... ++...+..+..++...|++++|...+++..+.. |+.....
T Consensus 185 -~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~~~~~~~Lg~~l~~~G~ 261 (656)
T PRK15174 185 -LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG--LDGAALRRSLGLAYYQSGR 261 (656)
T ss_pred -HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCC
Confidence 34788999999999999976553 344455566778999999999999999998754 4432221
Q ss_pred hH----hHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCccc
Q 042593 245 GE----EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPIT 319 (352)
Q Consensus 245 ~~----~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~ 319 (352)
.+ +|...+++.... . +.+...+..+...+.+.|++++|...+++.... +.+...+..+...+...|++++|+.
T Consensus 262 ~~eA~~~A~~~~~~Al~l-~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~ 339 (656)
T PRK15174 262 SREAKLQAAEHWRHALQF-N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASD 339 (656)
T ss_pred chhhHHHHHHHHHHHHhh-C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 33 478899988864 2 235678899999999999999999999988777 5566788889999999999999999
Q ss_pred ccccchhhhhh
Q 042593 320 LNSQRLFFFPA 330 (352)
Q Consensus 320 ~~~~~~~~~~~ 330 (352)
.+.+.+...|.
T Consensus 340 ~l~~al~~~P~ 350 (656)
T PRK15174 340 EFVQLAREKGV 350 (656)
T ss_pred HHHHHHHhCcc
Confidence 99888765554
No 14
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=6.3e-16 Score=131.93 Aligned_cols=260 Identities=15% Similarity=0.036 Sum_probs=113.5
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHhC-CCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHH
Q 042593 29 FLIRTCVTLSYPNLGTQLHAVFSKVG-FQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGII 107 (352)
Q Consensus 29 ~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li 107 (352)
.+...+.+.|++++|+++++...... -+.|...|..+...+...++.+.|.+.++++.+.+...... +..++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~-------~~~l~ 85 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQD-------YERLI 85 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------ccccc
Confidence 55788889999999999996655443 24455666677777888999999999999998744332222 66666
Q ss_pred HHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCC
Q 042593 108 DGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC 187 (352)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 187 (352)
.. ...+++++|.+++.+..+ . .++...+..++..+.+.++++++..+++.+....-.+.+...|..+...+.+.|+
T Consensus 86 ~l-~~~~~~~~A~~~~~~~~~-~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~ 161 (280)
T PF13429_consen 86 QL-LQDGDPEEALKLAEKAYE-R--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGD 161 (280)
T ss_dssp ------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCH
T ss_pred cc-cccccccccccccccccc-c--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Confidence 66 789999999999987733 2 2566677888899999999999999999987654333378889999999999999
Q ss_pred hHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChh
Q 042593 188 IFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIK 266 (352)
Q Consensus 188 ~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 266 (352)
.++|++.+++.....| |....+.++..+...|+.+++.++++...+. .+.|+.
T Consensus 162 ~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--------------------------~~~~~~ 215 (280)
T PF13429_consen 162 PDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--------------------------APDDPD 215 (280)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---------------------------HTSCC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--------------------------CcCHHH
Confidence 9999999999877766 5788999999999999999999999988774 234667
Q ss_pred hHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCcccccccch
Q 042593 267 HYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQRL 325 (352)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 325 (352)
.+..+..+|...|+.++|...+++.... +.|+.....+...+...|+.++|.++..+.+
T Consensus 216 ~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 216 LWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7888999999999999999999997765 5688888889999999999999999988865
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.62 E-value=3e-13 Score=127.97 Aligned_cols=289 Identities=11% Similarity=-0.088 Sum_probs=219.8
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHH
Q 042593 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGI 106 (352)
Q Consensus 27 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~l 106 (352)
+......+.+.|+++.|+..|+..++. .|+...|..+..+|.+.|++++|++.+++..+.++....+ |..+
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a-------~~~~ 200 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKA-------LNRR 200 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHH-------HHHH
Confidence 456677888999999999999998864 4788899999999999999999999999987633322122 8888
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhccCC---------------------------CCC-hhhHHHHHHH-------------
Q 042593 107 IDGYSRMNRSNEALALFRRMAACEYT---------------------------EPS-EITILAVLPA------------- 145 (352)
Q Consensus 107 i~~~~~~~~~~~a~~~~~~m~~~~~~---------------------------~p~-~~t~~~ll~~------------- 145 (352)
..+|...|++++|+.-|.......+. .|. ...+..+...
T Consensus 201 a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 201 ANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhh
Confidence 89999999999998766543111110 011 0000000000
Q ss_pred -----------------------HHhCCChhhHHHHHHHHHhcC-CCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC
Q 042593 146 -----------------------IWKNGEVRNCQLIHGYGEKRG-FNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201 (352)
Q Consensus 146 -----------------------~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 201 (352)
....+++++|...++...+.+ ..|.....++.+..++...|++++|...|++....
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 012256788899999888765 23435677888899999999999999999998766
Q ss_pred CCC-HhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh------------hHhHHHHHHHHHHhcCCCCChhhH
Q 042593 202 RKN-LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI------------GEEGLKFFDKMVEECEVLPDIKHY 268 (352)
Q Consensus 202 ~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------~~~a~~~~~~m~~~~~~~p~~~~~ 268 (352)
.|+ ...|..+...+...|++++|...|++..+.. |+..... .++|...|++.++. .+.+...+
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~ 436 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSH 436 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHH
Confidence 665 6688888999999999999999999988753 4432222 89999999998864 23356778
Q ss_pred HHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCcccccccchhhh
Q 042593 269 GCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFF 328 (352)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 328 (352)
..+..++.+.|++++|...+++.... +.+...|+.+...+...|++++|+..+.+.+...
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 88999999999999999999988766 5567899999999999999999999888876543
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.62 E-value=1.3e-13 Score=130.56 Aligned_cols=188 Identities=11% Similarity=-0.052 Sum_probs=154.8
Q ss_pred cCCcchHHHHHHHHHHhC-CCC-chhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcC
Q 042593 37 LSYPNLGTQLHAVFSKVG-FQS-HVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMN 114 (352)
Q Consensus 37 ~g~~~~a~~~~~~m~~~~-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~ 114 (352)
.+++++|.+.|+...+.+ ..| +...++.+...+...|++++|+..|++..+.++..... |..+...+...|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~-------~~~la~~~~~~g 379 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQS-------YIKRASMNLELG 379 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH-------HHHHHHHHHHCC
Confidence 367888999999988765 223 45678888999999999999999999987633322222 778888899999
Q ss_pred CHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHH
Q 042593 115 RSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL 194 (352)
Q Consensus 115 ~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 194 (352)
++++|...|++..... +-+..++..+...+...|++++|...+++..+.... +...+..+..++.+.|++++|...
T Consensus 380 ~~~eA~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~--~~~~~~~la~~~~~~g~~~eA~~~ 455 (615)
T TIGR00990 380 DPDKAEEDFDKALKLN--SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD--FIFSHIQLGVTQYKEGSIASSMAT 455 (615)
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc--CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999984432 234568888999999999999999999999887543 677888899999999999999999
Q ss_pred HHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 042593 195 FEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235 (352)
Q Consensus 195 ~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 235 (352)
|++.....| +...|+.+...+...|++++|...|++..+..
T Consensus 456 ~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 456 FRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 999876655 57889999999999999999999999988753
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.55 E-value=3.6e-12 Score=128.57 Aligned_cols=289 Identities=10% Similarity=0.050 Sum_probs=196.1
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCc---hhHHHHHHHHHhH--
Q 042593 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNL---VTWNVIITGLVKW-- 103 (352)
Q Consensus 31 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~---~~~~~~i~~~~~~-- 103 (352)
...+...|++++|...|+...+.. +.+...+..|..++.+.|++++|+..|++..+ |+. ..|..++.....|
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 456678899999999999999865 45788899999999999999999999998765 332 2233333211112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHH-----
Q 042593 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL----- 178 (352)
Q Consensus 104 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----- 178 (352)
......+.+.|++++|...|++..... +.+...+..+...+...|++++|.+.+++..+.... +...+..+
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~--~~~a~~~L~~l~~ 430 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG--NTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Confidence 223456778999999999999984432 134456777888899999999999999998876433 33333222
Q ss_pred -------------------------------------HHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCC
Q 042593 179 -------------------------------------IDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGM 220 (352)
Q Consensus 179 -------------------------------------i~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~ 220 (352)
...+...|++++|.+.|++..+..| +...+..+...|.+.|+
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 2344567889999999988776655 56777888889999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcchhh------------hHhHHHHHHHHHHh------------------------------
Q 042593 221 GKEAVENFERMQKVGLKPNRSWRI------------GEEGLKFFDKMVEE------------------------------ 258 (352)
Q Consensus 221 ~~~a~~~~~~m~~~~~~p~~~~~~------------~~~a~~~~~~m~~~------------------------------ 258 (352)
+++|...++++.+.. |+..... .++|...++.+...
T Consensus 511 ~~~A~~~l~~al~~~--P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 511 RSQADALMRRLAQQK--PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred HHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 999999999987643 3322111 33343333322110
Q ss_pred -------c-CCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCcccccccchh
Q 042593 259 -------C-EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQRLF 326 (352)
Q Consensus 259 -------~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 326 (352)
. ..+.+...+..+...+.+.|+.++|...+++.... +.+...+..+...|...|++++|++.+.+.+.
T Consensus 589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 0 11233445555666677777777777777766655 55566677777777777777777766665543
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.54 E-value=4e-12 Score=128.24 Aligned_cols=291 Identities=10% Similarity=0.008 Sum_probs=191.1
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCC-chhhH------------HHHHHHHHhcCChhHHHHHhccCCCCC
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQS-HVYVN------------TALGDMYVSLGFLKDSSKLFDELPERN 89 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~------------~~li~~~~~~g~~~~a~~~~~~m~~~~ 89 (352)
+...+..+..++.+.|++++|+..|+...+..-.. ....+ ..+...+.+.|++++|+..|++..+.+
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~ 381 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD 381 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 56778888888889999999999998887754211 11111 122445677888888888888876522
Q ss_pred chhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhhHH----------------------------
Q 042593 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS-EITIL---------------------------- 140 (352)
Q Consensus 90 ~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~t~~---------------------------- 140 (352)
+....+ +..+...+...|++++|++.|++..+.. |+ ...+.
T Consensus 382 P~~~~a-------~~~Lg~~~~~~g~~~eA~~~y~~aL~~~---p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 382 NTDSYA-------VLGLGDVAMARKDYAAAERYYQQALRMD---PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred CCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHH
Confidence 211111 6667778888888888888888874422 22 11221
Q ss_pred --------------HHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CH
Q 042593 141 --------------AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NL 205 (352)
Q Consensus 141 --------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~ 205 (352)
.+...+...|++++|...+++..+.... +...+..+..+|.+.|++++|...++++....| +.
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~--~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~ 529 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG--SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDP 529 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 1223345678888888888888876543 667777888888999999999999888765544 33
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhcC--------------------------------------CCCCcchhh---
Q 042593 206 VSWTTIISGFAMHGMGKEAVENFERMQKVG--------------------------------------LKPNRSWRI--- 244 (352)
Q Consensus 206 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--------------------------------------~~p~~~~~~--- 244 (352)
..+..+...+...++.++|...++.+.... ..|+.....
T Consensus 530 ~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~L 609 (1157)
T PRK11447 530 EQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTL 609 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHH
Confidence 333333333444444444444443321100 112221111
Q ss_pred ---------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccc
Q 042593 245 ---------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYF 314 (352)
Q Consensus 245 ---------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~ 314 (352)
.++|...|++..+. -+.+...+..++..|...|+.++|.+.++..... +.+...+..+...+...|++
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~ 687 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDT 687 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCH
Confidence 78888888888864 2335677888888888889999998888877665 44556677777888888888
Q ss_pred cCcccccccchhh
Q 042593 315 FSPITLNSQRLFF 327 (352)
Q Consensus 315 ~~a~~~~~~~~~~ 327 (352)
++|++++++.+..
T Consensus 688 ~eA~~~~~~al~~ 700 (1157)
T PRK11447 688 AAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHHhhh
Confidence 8888888877653
No 19
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.54 E-value=1e-12 Score=116.07 Aligned_cols=264 Identities=13% Similarity=0.076 Sum_probs=207.7
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh
Q 042593 58 HVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137 (352)
Q Consensus 58 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 137 (352)
-..+|+.+.+.+-..|++++|+.+++.+.+.++....+ |..+..++...|+.+.|.+.|.+..+ +.|+..
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida-------~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ 184 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDA-------YINLAAALVTQGDLELAVQCFFEALQ---LNPDLY 184 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHH-------HhhHHHHHHhcCCCcccHHHHHHHHh---cCcchh
Confidence 35689999999999999999999999987633322222 88889999999999999999988844 456655
Q ss_pred h-HHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCC-HhhHHHHHHHH
Q 042593 138 T-ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN-LVSWTTIISGF 215 (352)
Q Consensus 138 t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~ 215 (352)
. .+.+-+-+...|++++|...|.+..+.... -...|+.|...+...|+...|++.|++..+..|+ ...|-.|-..|
T Consensus 185 ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~--fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ 262 (966)
T KOG4626|consen 185 CARSDLGNLLKAEGRLEEAKACYLKAIETQPC--FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVY 262 (966)
T ss_pred hhhcchhHHHHhhcccchhHHHHHHHHhhCCc--eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHH
Confidence 3 334444555678899999888888877543 5778889999999999999999999988777775 57788888889
Q ss_pred HcCCCHHHHHHHHHHHHhcCCCCCcchhh------------hHhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCChh
Q 042593 216 AMHGMGKEAVENFERMQKVGLKPNRSWRI------------GEEGLKFFDKMVEECEVLPD-IKHYGCLIDILERAGRLE 282 (352)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~ 282 (352)
...+.+++|...|.+... ..|+..... .+.|++.+++.++. .|+ ...|+.|..++...|++.
T Consensus 263 ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~---~P~F~~Ay~NlanALkd~G~V~ 337 (966)
T KOG4626|consen 263 KEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL---QPNFPDAYNNLANALKDKGSVT 337 (966)
T ss_pred HHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc---CCCchHHHhHHHHHHHhccchH
Confidence 999999999999888766 456543332 88888888887753 554 568889999999999999
Q ss_pred HHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCcccccccchhhhhhHHHHhhhh
Q 042593 283 QAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAALYALTQI 338 (352)
Q Consensus 283 ~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 338 (352)
+|+..++..... +....+.+.|...|...|++++|..++...+..+|-...+++++
T Consensus 338 ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNL 394 (966)
T KOG4626|consen 338 EAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNL 394 (966)
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhH
Confidence 999998887766 55667888888889999999999998888888777666555543
No 20
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=3.9e-14 Score=120.87 Aligned_cols=231 Identities=16% Similarity=0.090 Sum_probs=114.2
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGL 100 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~~ 100 (352)
|...|..+...+-..++++.|.+.++.+...+ +-++..+..++.. ...+++++|.+++++.-+ ++...
T Consensus 43 ~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~-------- 112 (280)
T PF13429_consen 43 DPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRY-------- 112 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccc-ccccccccccccc-cccccccccccccccccccccccch--------
Confidence 44444445556667899999999999999877 3477788888888 789999999999987754 44444
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHH
Q 042593 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180 (352)
Q Consensus 101 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 180 (352)
+...+..+.+.++++++.+++++.......+.+...|..+...+.+.|+.++|.+.+++..+..+. +..+.+.++.
T Consensus 113 --l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~--~~~~~~~l~~ 188 (280)
T PF13429_consen 113 --LLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD--DPDARNALAW 188 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT---HHHHHHHHH
T ss_pred --hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHH
Confidence 777888899999999999999998544445567778899999999999999999999999998655 7888999999
Q ss_pred HHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhc
Q 042593 181 TYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEEC 259 (352)
Q Consensus 181 ~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~ 259 (352)
.+...|+.+++.++++...+. +.|...+..+..+|...|+.++|...+++..+.
T Consensus 189 ~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~------------------------- 243 (280)
T PF13429_consen 189 LLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL------------------------- 243 (280)
T ss_dssp HHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-------------------------
T ss_pred HHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc-------------------------
Confidence 999999999998988887655 456677889999999999999999999998863
Q ss_pred CCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCC
Q 042593 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPS 293 (352)
Q Consensus 260 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 293 (352)
.+.|+.....+.+++...|+.++|.++.++.-.
T Consensus 244 -~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 244 -NPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -STT-HHHHHHHHHHHT-----------------
T ss_pred -ccccccccccccccccccccccccccccccccc
Confidence 233788888999999999999999999877643
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.53 E-value=7.8e-12 Score=120.82 Aligned_cols=294 Identities=11% Similarity=-0.049 Sum_probs=195.3
Q ss_pred cccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHHHH
Q 042593 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGLV 101 (352)
Q Consensus 24 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~~~ 101 (352)
...+..+...+.+.|++++|+..++...+.. +.+.. +..+..++...|+.++|+..++++.+ |+... .
T Consensus 83 ~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~--~------ 152 (765)
T PRK10049 83 DDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQ--Y------ 152 (765)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--H------
Confidence 4445566666667777777777777776653 34445 66667777777777777777777654 32211 0
Q ss_pred hHHHHHHHHHhcCCH----------------------------------------------HHHHHHHHHhHhccCCCCC
Q 042593 102 KWTGIIDGYSRMNRS----------------------------------------------NEALALFRRMAACEYTEPS 135 (352)
Q Consensus 102 ~~~~li~~~~~~~~~----------------------------------------------~~a~~~~~~m~~~~~~~p~ 135 (352)
+..+...+...++. ++|++.++.+.+.....|+
T Consensus 153 -~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 153 -PTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred -HHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 22233333333333 4455555555332222333
Q ss_pred hhh-HH----HHHHHHHhCCChhhHHHHHHHHHhcCCC-CCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCC-----
Q 042593 136 EIT-IL----AVLPAIWKNGEVRNCQLIHGYGEKRGFN-AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN----- 204 (352)
Q Consensus 136 ~~t-~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----- 204 (352)
... +. ..+.++...|+.++|...|+.+.+.+.. |.+... .+..+|...|++++|+..|+++....|.
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~--~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~ 309 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQR--WVASAYLKLHQPEKAQSILTELFYHPETIADLS 309 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHH--HHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCC
Confidence 221 11 1134456778999999999998887643 312222 2567889999999999999987655442
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-----------CCCcchh---h-----------hHhHHHHHHHHHHhc
Q 042593 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGL-----------KPNRSWR---I-----------GEEGLKFFDKMVEEC 259 (352)
Q Consensus 205 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----------~p~~~~~---~-----------~~~a~~~~~~m~~~~ 259 (352)
......+..++...|++++|...++++.+... .|+.... . .++|...++++...
T Consensus 310 ~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~- 388 (765)
T PRK10049 310 DEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN- 388 (765)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 24466677788899999999999999887531 1232111 1 88899999888764
Q ss_pred CCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCcccccccchhhhhhHH
Q 042593 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAAL 332 (352)
Q Consensus 260 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 332 (352)
.+-+...+..+...+...|+.++|++.+++.... +.+...+-.....+...|++++|..+.++.+..+|..-
T Consensus 389 -~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 389 -APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 3446778888899999999999999999988877 55566777788888999999999999988887766553
No 22
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.52 E-value=8.9e-12 Score=111.38 Aligned_cols=272 Identities=10% Similarity=-0.087 Sum_probs=207.5
Q ss_pred cCCcchHHHHHHHHHHhCCCCchhh-HHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHHHHhHHHHHHHHHhc
Q 042593 37 LSYPNLGTQLHAVFSKVGFQSHVYV-NTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGLVKWTGIIDGYSRM 113 (352)
Q Consensus 37 ~g~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~~~~~~~li~~~~~~ 113 (352)
.|+++.|.+......+.+ +++.. |-....+..+.|+++.|...++++.+ |+..... .-.....+...
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~--------~l~~a~l~l~~ 166 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPV--------EITRVRIQLAR 166 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHH--------HHHHHHHHHHC
Confidence 599999998877665543 22333 43445555889999999999999876 4443211 11235678889
Q ss_pred CCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCch-------hhHHHHHHHHHhhC
Q 042593 114 NRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDI-------HVSNCLIDTYAKCG 186 (352)
Q Consensus 114 ~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g 186 (352)
|+++.|...++++ .... +-+......+...+.+.|+++++..++..+.+.+..+ .. .+|..++.......
T Consensus 167 g~~~~Al~~l~~~-~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 167 NENHAARHGVDKL-LEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred CCHHHHHHHHHHH-HhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999 4333 2245678888999999999999999999999987653 22 23334444445556
Q ss_pred ChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh---------hHhHHHHHHHHH
Q 042593 187 CIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI---------GEEGLKFFDKMV 256 (352)
Q Consensus 187 ~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---------~~~a~~~~~~m~ 256 (352)
+.+...++++.+.+. +.++.....+..++...|+.++|..++++..+.. |+..... .+++....+...
T Consensus 244 ~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l~~l~~~l~~~~~~~al~~~e~~l 321 (398)
T PRK10747 244 GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERLVLLIPRLKTNNPEQLEKVLRQQI 321 (398)
T ss_pred CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHHHHHhhccCCChHHHHHHHHHHH
Confidence 677888888888655 4578888999999999999999999999988843 3433211 677888888877
Q ss_pred HhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHHHhcccccCcccccccch
Q 042593 257 EECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRL 325 (352)
Q Consensus 257 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 325 (352)
+. .+-|......+...+.+.|++++|.+.|+......|+...+-.+...+...|+.++|.+++++.+
T Consensus 322 k~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 322 KQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred hh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 64 33356678889999999999999999999998778999999999999999999999998888765
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.50 E-value=2.3e-11 Score=103.18 Aligned_cols=284 Identities=11% Similarity=0.003 Sum_probs=187.1
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCC----CCCchhHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP----ERNLVTWNVIIT 98 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~~~~~~~~i~ 98 (352)
+..+|.++|.++|+-...+.|.+++++-.+...+.+..+||.+|.+-.-..+ .++..+|. .||..|
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~T------ 275 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFT------ 275 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHh------
Confidence 6789999999999999999999999998887778999999999987654433 45555554 499999
Q ss_pred HHHhHHHHHHHHHhcCCHH----HHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhh-HHHHHHHHHhc----C---
Q 042593 99 GLVKWTGIIDGYSRMNRSN----EALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRN-CQLIHGYGEKR----G--- 166 (352)
Q Consensus 99 ~~~~~~~li~~~~~~~~~~----~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~----~--- 166 (352)
+|+++++.++.|+++ .|++++.+| +.-|+.|...+|..+|..+++.++..+ +..++.++... .
T Consensus 276 ----fNalL~c~akfg~F~~ar~aalqil~Em-KeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 276 ----FNALLSCAAKFGKFEDARKAALQILGEM-KEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred ----HHHHHHHHHHhcchHHHHHHHHHHHHHH-HHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 888899999999765 467788889 889999999999999999888877644 34444444321 1
Q ss_pred CCCCchhhHHHHHHHHHhhCChHHHHHHHHHhcc------------------------------------------C--C
Q 042593 167 FNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV------------------------------------------D--R 202 (352)
Q Consensus 167 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~------------------------------------------~--~ 202 (352)
+.|.+...|...|..|.+..+.+-|.++-.-... . .
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 2233555666777777777777766665443322 1 3
Q ss_pred CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcc-----------------hhh--------hHhHHHHH-----
Q 042593 203 KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS-----------------WRI--------GEEGLKFF----- 252 (352)
Q Consensus 203 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----------------~~~--------~~~a~~~~----- 252 (352)
|+..+-..++++....|.++-.-++|.+++..|-+.+.. +-. .+-|..++
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~ 510 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYES 510 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555566666666666666666655544211111 110 11111111
Q ss_pred --HHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC---CCCchhhH---HHHHHHHhcccccCcccccccc
Q 042593 253 --DKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ---ITNVVVWR---TGFLRLLINSYFFSPITLNSQR 324 (352)
Q Consensus 253 --~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~---~li~~~~~~g~~~~a~~~~~~~ 324 (352)
.++.+ ........+.+.-.+.+.|+.++|.+++..+.+. .|-...-| -++..-........|+....-+
T Consensus 511 ~~~R~r~---~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 511 QPIRQRA---QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred hHHHHHh---ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 12222 2234445667777889999999999999877433 44445555 5555666667776666655544
No 24
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.45 E-value=7.9e-11 Score=105.83 Aligned_cols=285 Identities=10% Similarity=-0.048 Sum_probs=200.9
Q ss_pred cHHHHHHHHH--hcCCcchHHHHHHHHHHhCCCCchh-hHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHHH
Q 042593 26 TYSFLIRTCV--TLSYPNLGTQLHAVFSKVGFQSHVY-VNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGL 100 (352)
Q Consensus 26 ~~~~ll~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~~ 100 (352)
....+..+.. ..|+++.|.+.+....+.. |++. .+-....++...|+.+.|.+.+++..+ |+....-
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~------ 155 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILV------ 155 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHH------
Confidence 3444555544 5799999999998776654 5543 344556778889999999999999754 4432100
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHH
Q 042593 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180 (352)
Q Consensus 101 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 180 (352)
--.....+...|+++.|...++++.+ .. +-+......+...+...|+++++...+..+.+.+..+ .......-..
T Consensus 156 --~~~~a~l~l~~~~~~~Al~~l~~l~~-~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~-~~~~~~l~~~ 230 (409)
T TIGR00540 156 --EIARTRILLAQNELHAARHGVDKLLE-MA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD-DEEFADLEQK 230 (409)
T ss_pred --HHHHHHHHHHCCCHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC-HHHHHHHHHH
Confidence 22235677889999999999999944 33 2244578899999999999999999999999997653 2222122222
Q ss_pred HH---HhhCC----hHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcc-----hhh---
Q 042593 181 TY---AKCGC----IFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS-----WRI--- 244 (352)
Q Consensus 181 ~~---~~~g~----~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~~~--- 244 (352)
++ ...+. .+...+.++..... +.+...+..+...+...|+.++|.+++++..+.. ||.. .+.
T Consensus 231 a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~ 308 (409)
T TIGR00540 231 AEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIP 308 (409)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhh
Confidence 22 22222 23334444443222 2478889999999999999999999999998854 3333 222
Q ss_pred ------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhc--CCCCCCCchhhHHHHHHHHhcccccC
Q 042593 245 ------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG--IPSQITNVVVWRTGFLRLLINSYFFS 316 (352)
Q Consensus 245 ------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--m~~~~~~~~~~~~li~~~~~~g~~~~ 316 (352)
.+.+.+.+++..+...-.|+.....++...+.+.|++++|.+.|+. .....|+...+..+...+...|+.++
T Consensus 309 ~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~ 388 (409)
T TIGR00540 309 RLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAE 388 (409)
T ss_pred hcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHH
Confidence 4556666666665422222225666889999999999999999994 43336888889999999999999999
Q ss_pred cccccccch
Q 042593 317 PITLNSQRL 325 (352)
Q Consensus 317 a~~~~~~~~ 325 (352)
|.++.++.+
T Consensus 389 A~~~~~~~l 397 (409)
T TIGR00540 389 AAAMRQDSL 397 (409)
T ss_pred HHHHHHHHH
Confidence 998888764
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.45 E-value=4.1e-11 Score=115.91 Aligned_cols=290 Identities=10% Similarity=0.039 Sum_probs=216.1
Q ss_pred CCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CC-chhHHHHH
Q 042593 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RN-LVTWNVII 97 (352)
Q Consensus 21 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~~i 97 (352)
++++....-.+.+....|+.++|++++....... +.+...+..+..++.+.|++++|..++++..+ |+ ...
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a----- 85 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDY----- 85 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----
Confidence 3467778888999999999999999999987733 45666799999999999999999999999754 33 333
Q ss_pred HHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHH
Q 042593 98 TGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177 (352)
Q Consensus 98 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 177 (352)
+..+...+...|+.++|...+++..... +.+.. +..+..++...|+.++|...++++.+.... +...+..
T Consensus 86 -----~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~--~~~~~~~ 155 (765)
T PRK10049 86 -----QRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ--TQQYPTE 155 (765)
T ss_pred -----HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHH
Confidence 6677888999999999999999994432 22344 888888999999999999999999998655 6777777
Q ss_pred HHHHHHhhCChHHHHHHHHHhccCCCCH------hhHHHHHHHHH-----cCCCH---HHHHHHHHHHHhc-CCCCCcch
Q 042593 178 LIDTYAKCGCIFSASKLFEDTSVDRKNL------VSWTTIISGFA-----MHGMG---KEAVENFERMQKV-GLKPNRSW 242 (352)
Q Consensus 178 li~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~li~~~~-----~~~~~---~~a~~~~~~m~~~-~~~p~~~~ 242 (352)
+..++...|..++|++.++.... .|+. .....++.... ..+++ ++|...++.+.+. ...|+...
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~ 234 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA 234 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence 88899999999999999998765 4432 11222232222 12234 7788888888864 23333321
Q ss_pred h------------h----hHhHHHHHHHHHHhcCC-CCChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCC-----chh
Q 042593 243 R------------I----GEEGLKFFDKMVEECEV-LPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITN-----VVV 300 (352)
Q Consensus 243 ~------------~----~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~~~ 300 (352)
. . .++|...|+++.+. +. .|+. .-..+..+|...|++++|...|+++....|. ...
T Consensus 235 ~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~-~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~ 312 (765)
T PRK10049 235 DYQRARIDRLGALLARDRYKDVISEYQRLKAE-GQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEE 312 (765)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc-CCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHH
Confidence 1 1 78899999998876 42 2332 1222577899999999999999987655222 234
Q ss_pred hHHHHHHHHhcccccCcccccccchhhhh
Q 042593 301 WRTGFLRLLINSYFFSPITLNSQRLFFFP 329 (352)
Q Consensus 301 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 329 (352)
...+..++...|++++|++.+.+.....|
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P 341 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSP 341 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCC
Confidence 66677788999999999999887765544
No 26
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.44 E-value=9.9e-12 Score=113.85 Aligned_cols=246 Identities=12% Similarity=0.006 Sum_probs=168.8
Q ss_pred hhHHHHHHhhccCCCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHh
Q 042593 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLF 82 (352)
Q Consensus 3 ~~~~M~~~~~~~~g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 82 (352)
++-.|+. .|+.| |.+||..+|..||..|+.+.|- +|..|.-...+.+...++.++......++.+.+.
T Consensus 12 fla~~e~-----~gi~P---nRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--- 79 (1088)
T KOG4318|consen 12 FLALHEI-----SGILP---NRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--- 79 (1088)
T ss_pred HHHHHHH-----hcCCC---chhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---
Confidence 4567777 89999 9999999999999999999999 9999999998889999999999999999988776
Q ss_pred ccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHH---HHHHHHHhH---hccCCCCChhhHHH--------------H
Q 042593 83 DELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNE---ALALFRRMA---ACEYTEPSEITILA--------------V 142 (352)
Q Consensus 83 ~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~---a~~~~~~m~---~~~~~~p~~~t~~~--------------l 142 (352)
+|...+ |+.|..+|...||+.. +.+.++... ...|+.....-+-. .
T Consensus 80 ----ep~aDt----------yt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~ 145 (1088)
T KOG4318|consen 80 ----EPLADT----------YTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA 145 (1088)
T ss_pred ----CCchhH----------HHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH
Confidence 677777 9999999999998765 222122110 11121111111111 1
Q ss_pred HHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC--CCCHhhHHHHHHHHHcCCC
Q 042593 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD--RKNLVSWTTIISGFAMHGM 220 (352)
Q Consensus 143 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~li~~~~~~~~ 220 (352)
+.-....|-++.+.+++..+-..... . .+...++-+.. .....+++.+....- .|+..+|.+++.+-...|+
T Consensus 146 illlv~eglwaqllkll~~~Pvsa~~--~--p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~ 219 (1088)
T KOG4318|consen 146 ILLLVLEGLWAQLLKLLAKVPVSAWN--A--PFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGD 219 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhhCCccccc--c--hHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCc
Confidence 11122223333333333222111111 0 11111222211 233344444443322 6999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCcchhh--------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCh
Q 042593 221 GKEAVENFERMQKVGLKPNRSWRI--------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRL 281 (352)
Q Consensus 221 ~~~a~~~~~~m~~~~~~p~~~~~~--------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 281 (352)
.+.|..++.+|++.|+..+.+.|+ ...+..++.-|... |+.|+..|+...+..+.+.|..
T Consensus 220 ~d~Ak~ll~emke~gfpir~HyFwpLl~g~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~t 287 (1088)
T KOG4318|consen 220 VDGAKNLLYEMKEKGFPIRAHYFWPLLLGINAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQT 287 (1088)
T ss_pred hhhHHHHHHHHHHcCCCcccccchhhhhcCccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchhh
Confidence 999999999999999999999887 56666677777777 9999999999888888885553
No 27
>PF13041 PPR_2: PPR repeat family
Probab=99.44 E-value=1.7e-13 Score=83.65 Aligned_cols=49 Identities=20% Similarity=0.199 Sum_probs=48.0
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHh
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS 71 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~ 71 (352)
|..+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++||+
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999985
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.43 E-value=8.3e-11 Score=114.67 Aligned_cols=258 Identities=8% Similarity=-0.051 Sum_probs=168.6
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGL 100 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~~ 100 (352)
+...|..+..++.. ++.++|...+....... |+......+...+...|++++|...|+++.. |+...
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a-------- 544 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNED-------- 544 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHH--------
Confidence 34455555555555 77777887776666543 5544433444455678888888888877653 33333
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh-hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHH
Q 042593 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE-ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179 (352)
Q Consensus 101 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 179 (352)
+..+...+.+.|+.++|...+++..+ .. |+. ..+..+.....+.|++++|...+++..+.. | +...+..+.
T Consensus 545 --~~~la~all~~Gd~~eA~~~l~qAL~-l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P-~~~a~~~LA 616 (987)
T PRK09782 545 --LLAAANTAQAAGNGAARDRWLQQAEQ-RG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--P-SANAYVARA 616 (987)
T ss_pred --HHHHHHHHHHCCCHHHHHHHHHHHHh-cC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--C-CHHHHHHHH
Confidence 45556677778888888888888733 22 332 233333344455688888888888877654 4 466777778
Q ss_pred HHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHh
Q 042593 180 DTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEE 258 (352)
Q Consensus 180 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~ 258 (352)
.++.+.|+.++|...+++.....| +...++.+..++...|+.++|...+++..+. .|+
T Consensus 617 ~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~------------------- 675 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPD------------------- 675 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC-------------------
Confidence 888888888888888888766654 4666777777788888888888888887763 222
Q ss_pred cCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCcccccccch
Q 042593 259 CEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQRL 325 (352)
Q Consensus 259 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 325 (352)
+...+..+..++...|++++|+..+++.... +.+..+.-....-.....+++.|++-..++.
T Consensus 676 -----~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 676 -----DPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred -----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 5566777777788888888888877777665 3233444444445556666666666555554
No 29
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=6.2e-11 Score=97.97 Aligned_cols=201 Identities=12% Similarity=-0.026 Sum_probs=159.1
Q ss_pred cccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhH
Q 042593 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKW 103 (352)
Q Consensus 24 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~ 103 (352)
...+..+...+...|++++|.+.++...+.. +.+...+..+...+...|++++|.+.+++..+.+...... +
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------~ 102 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDV-------L 102 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-------H
Confidence 4567788888999999999999999988765 4567788889999999999999999999876522221111 7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q 042593 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183 (352)
Q Consensus 104 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 183 (352)
..+...+...|++++|.+.+++.............+..+..++...|+.++|...+++..+.... +...+..+...+.
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~ 180 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ--RPESLLELAELYY 180 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--ChHHHHHHHHHHH
Confidence 77788889999999999999998443222223446777888889999999999999998876543 5677888999999
Q ss_pred hhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 184 KCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 184 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
..|++++|.+.+++.... +.+...+..+...+...|+.++|..+.+.+...
T Consensus 181 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 181 LRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999999987655 345667777888888999999999988887653
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=8.1e-11 Score=99.93 Aligned_cols=222 Identities=15% Similarity=0.152 Sum_probs=151.3
Q ss_pred CCchhhHHHHHHHHHhcCChhHHHHHhccCCCC----CchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccC
Q 042593 56 QSHVYVNTALGDMYVSLGFLKDSSKLFDELPER----NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY 131 (352)
Q Consensus 56 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 131 (352)
+.+..+|.++|.+.|+....+.|.+++++-... +..+ ||.+|.+-.-. .-.+++.+| ....
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~a----------FN~lI~~~S~~----~~K~Lv~EM-isqk 268 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREA----------FNGLIGASSYS----VGKKLVAEM-ISQK 268 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHh----------hhhhhhHHHhh----ccHHHHHHH-HHhh
Confidence 446677777888888777777777777776542 3334 55555543322 225777888 6666
Q ss_pred CCCChhhHHHHHHHHHhCCChhh----HHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHH-HHHHHHHhcc----C-
Q 042593 132 TEPSEITILAVLPAIWKNGEVRN----CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS-ASKLFEDTSV----D- 201 (352)
Q Consensus 132 ~~p~~~t~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~----~- 201 (352)
..||..|+|+++.+.++.|+++. |.+++.+|++.|+.| ...+|..+|..+++-++..+ |..++.++.. +
T Consensus 269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVeP-sLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~ 347 (625)
T KOG4422|consen 269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEP-SLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKT 347 (625)
T ss_pred cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCc-chhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCc
Confidence 78888888888888888887655 457788888888888 88888888888888877654 3444444322 1
Q ss_pred ----CC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcC----CCCCc--chhh------------hHhHHHHHHHHHHh
Q 042593 202 ----RK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVG----LKPNR--SWRI------------GEEGLKFFDKMVEE 258 (352)
Q Consensus 202 ----~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~~--~~~~------------~~~a~~~~~~m~~~ 258 (352)
.| |..-|...+..|.+..+.+-|.++-.-+.... +.|+. ..|. .+.....|+.|+..
T Consensus 348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~ 427 (625)
T KOG4422|consen 348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS 427 (625)
T ss_pred ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22 45567777888887778777777765554321 22221 1111 66667777777776
Q ss_pred cCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 259 CEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 259 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
-+-|+..+...++++....|.++-.-+++.++...
T Consensus 428 -~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 428 -AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred -eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh
Confidence 67788888888888888888888888888777544
No 31
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.40 E-value=9.5e-11 Score=114.29 Aligned_cols=230 Identities=11% Similarity=-0.015 Sum_probs=183.3
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC
Q 042593 58 HVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS 135 (352)
Q Consensus 58 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 135 (352)
+...|..+..++.. ++.++|...+.+... |+... ...+...+...|++++|...|+++ ... .|+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~----------~L~lA~al~~~Gr~eeAi~~~rka-~~~--~p~ 541 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ----------HRAVAYQAYQVEDYATALAAWQKI-SLH--DMS 541 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH----------HHHHHHHHHHCCCHHHHHHHHHHH-hcc--CCC
Confidence 56778888888877 888899997777654 54221 233344556899999999999998 433 345
Q ss_pred hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHH
Q 042593 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGF 215 (352)
Q Consensus 136 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~ 215 (352)
...+..+..++.+.|+.++|...++...+.... ....+..+.....+.|++++|...+++.....|+...|..+..++
T Consensus 542 ~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~--~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l 619 (987)
T PRK09782 542 NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG--DNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIY 619 (987)
T ss_pred cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 555677778889999999999999999887533 444444444455566999999999999987788888999999999
Q ss_pred HcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-
Q 042593 216 AMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ- 294 (352)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 294 (352)
.+.|+.++|...+++..+.. | -+...++.+..++...|+.++|...+++....
T Consensus 620 ~~lG~~deA~~~l~~AL~l~--P------------------------d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 620 RQRHNVPAAVSDLRAALELE--P------------------------NNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhC--C------------------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999988742 2 25678888889999999999999999988777
Q ss_pred CCCchhhHHHHHHHHhcccccCcccccccchhhhh
Q 042593 295 ITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFP 329 (352)
Q Consensus 295 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 329 (352)
+.+...+..+...+...|++++|+..+++.+...|
T Consensus 674 P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 674 PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 66778999999999999999999999998866444
No 32
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.39 E-value=1.7e-10 Score=94.55 Aligned_cols=271 Identities=13% Similarity=0.044 Sum_probs=184.3
Q ss_pred cHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC-CCchhHHHHHHHHHhHH
Q 042593 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE-RNLVTWNVIITGLVKWT 104 (352)
Q Consensus 26 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~i~~~~~~~ 104 (352)
.|-.=++.+. ..+.+.|.++|-+|.+.. +-+..+--+|.+.|-+.|.+|.|+++.+.+.+ ||.. +.--..+ .-
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT-~~qr~lA---l~ 111 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLT-FEQRLLA---LQ 111 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCc-hHHHHHH---HH
Confidence 4544454444 458899999999998854 44566777899999999999999999998765 6543 2322222 56
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCc---hhhHHHHHHH
Q 042593 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD---IHVSNCLIDT 181 (352)
Q Consensus 105 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~ 181 (352)
.|..-|...|-+|.|.++|..+ .+.+ ..-....-.++..|-...+|++|.++-+++.+.+..+.+ .+.|--|...
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L-~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~ 189 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQL-VDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ 189 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHH-hcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence 6778889999999999999999 4432 223446778999999999999999999999888766522 2344455556
Q ss_pred HHhhCChHHHHHHHHHhccCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcC
Q 042593 182 YAKCGCIFSASKLFEDTSVDRKN-LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECE 260 (352)
Q Consensus 182 ~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~ 260 (352)
+.-..+++.|..++.+.....|+ +..--.+-......|+++.|.+.++.+.+.+.
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~------------------------ 245 (389)
T COG2956 190 ALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNP------------------------ 245 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhCh------------------------
Confidence 66678899999999887666554 44444455688899999999999999988632
Q ss_pred CCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHHHhcccccCcccccccchhhhh
Q 042593 261 VLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFP 329 (352)
Q Consensus 261 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 329 (352)
.--+.+...|..+|...|+.++....+.++....++...-..+..--....-.+.|.....+.+...|
T Consensus 246 -~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P 313 (389)
T COG2956 246 -EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKP 313 (389)
T ss_pred -HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC
Confidence 12234445566666666666666665555444333333444444433444444455555555554444
No 33
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.39 E-value=9.9e-10 Score=105.20 Aligned_cols=290 Identities=12% Similarity=0.022 Sum_probs=200.0
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHH---------
Q 042593 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV--------- 101 (352)
Q Consensus 31 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~--------- 101 (352)
...+...|+++.|.++++.+.+.. +-++..+..++..+...++.++|++.++++.+.++.....+..++.
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHH
Confidence 456777799999999999988876 4456777778888888899999999988887633322222222222
Q ss_pred -----------------hHHHHHHHHHhcCC------------------------------------------------H
Q 042593 102 -----------------KWTGIIDGYSRMNR------------------------------------------------S 116 (352)
Q Consensus 102 -----------------~~~~li~~~~~~~~------------------------------------------------~ 116 (352)
.+..+..++.+.|- .
T Consensus 188 AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 188 ALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 11111122222221 2
Q ss_pred HHHHHHHHHhHhccCCCCChh-----hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHH
Q 042593 117 NEALALFRRMAACEYTEPSEI-----TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191 (352)
Q Consensus 117 ~~a~~~~~~m~~~~~~~p~~~-----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 191 (352)
+.|+.-++.+....+..|... ...-.+-++...|+..++.+.++.+...+... ...+-..+.++|...++.++|
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~-P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKM-PDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC-CHHHHHHHHHHHHhcCCcHHH
Confidence 233333333322222223321 22244567778899999999999999888654 566778899999999999999
Q ss_pred HHHHHHhccCC-------CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-----------CCCcchhh---------
Q 042593 192 SKLFEDTSVDR-------KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL-----------KPNRSWRI--------- 244 (352)
Q Consensus 192 ~~~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----------~p~~~~~~--------- 244 (352)
+.+++.+.... ++......|.-+|..++++++|..+++++.+... .|+.....
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 99999875432 2344457788899999999999999999987422 12221111
Q ss_pred -----hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCcc
Q 042593 245 -----GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPI 318 (352)
Q Consensus 245 -----~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~ 318 (352)
..+|++.++++... -+-|......+.+.+...|++.+|++.++..... +.+..+.......+...|++.+|.
T Consensus 427 ~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQME 504 (822)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHH
Confidence 88999999998763 3447888889999999999999999999777666 556667777888888899999886
Q ss_pred cccccc
Q 042593 319 TLNSQR 324 (352)
Q Consensus 319 ~~~~~~ 324 (352)
.+.+.-
T Consensus 505 ~~~~~l 510 (822)
T PRK14574 505 LLTDDV 510 (822)
T ss_pred HHHHHH
Confidence 666443
No 34
>PF13041 PPR_2: PPR repeat family
Probab=99.37 E-value=1.4e-12 Score=79.54 Aligned_cols=45 Identities=27% Similarity=0.483 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHh
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~ 148 (352)
||.+|++|++.|++++|.++|++| ++.|+.||..||+.+|++|++
T Consensus 6 yn~li~~~~~~~~~~~a~~l~~~M-~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 6 YNTLISGYCKAGKFEEALKLFKEM-KKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHcC
Confidence 777777788888888888888888 677778888888888877764
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.37 E-value=7.2e-10 Score=99.17 Aligned_cols=244 Identities=10% Similarity=0.043 Sum_probs=181.4
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhCCCCchhhHH--HHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHH
Q 042593 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNT--ALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIID 108 (352)
Q Consensus 31 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~ 108 (352)
..+..+.|+++.|.+.++.+.+. .|+..... .....+...|+++.|...+++..+.++..... ...+..
T Consensus 125 A~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~a-------l~ll~~ 195 (398)
T PRK10747 125 AEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEV-------LRLAEQ 195 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH-------HHHHHH
Confidence 44557899999999999999764 46654333 34678889999999999999987632222111 778889
Q ss_pred HHHhcCCHHHHHHHHHHhHhccCCCCCh------hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 109 GYSRMNRSNEALALFRRMAACEYTEPSE------ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
.|.+.|++++|.+++..+.+.....|.. .+|..++.......+.+...++++.+-+.- .. ++.....+..++
T Consensus 196 ~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-~~-~~~~~~~~A~~l 273 (398)
T PRK10747 196 AYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT-RH-QVALQVAMAEHL 273 (398)
T ss_pred HHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-hC-CHHHHHHHHHHH
Confidence 9999999999999999994443332322 133444444445556666677777664432 22 778888999999
Q ss_pred HhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh------------hHhHHH
Q 042593 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI------------GEEGLK 250 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------~~~a~~ 250 (352)
...|+.++|.+++++..+..+|.... ++.+.+..++.+++.+..+...+. .|+..... +++|.+
T Consensus 274 ~~~g~~~~A~~~L~~~l~~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~ 349 (398)
T PRK10747 274 IECDDHDTAQQIILDGLKRQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASL 349 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999887766666322 344445669999999999998875 35544332 999999
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCC
Q 042593 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292 (352)
Q Consensus 251 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 292 (352)
.|+...+. .|+..++..+..++.+.|+.++|.+.+++-.
T Consensus 350 ~le~al~~---~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 350 AFRAALKQ---RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998864 7999999999999999999999999998653
No 36
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.35 E-value=7.9e-10 Score=93.27 Aligned_cols=276 Identities=13% Similarity=-0.046 Sum_probs=213.4
Q ss_pred hcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCC--CchhHHHHHHHHHhHHHHHHHHHhc
Q 042593 36 TLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPER--NLVTWNVIITGLVKWTGIIDGYSRM 113 (352)
Q Consensus 36 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~i~~~~~~~~li~~~~~~ 113 (352)
..|++..|++....-.+.+-.| ...|-.-..+....|+.+.+-.++.+..++ |... .. +-.........
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l-~v-------~ltrarlll~~ 166 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTL-AV-------ELTRARLLLNR 166 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchH-HH-------HHHHHHHHHhC
Confidence 3699999999988877777333 455666778888899999999999998764 3332 11 55666778889
Q ss_pred CCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCch-------hhHHHHHHHHHhhC
Q 042593 114 NRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDI-------HVSNCLIDTYAKCG 186 (352)
Q Consensus 114 ~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g 186 (352)
|+.+.|..-+.++ ...+ +-+.........+|.+.|++.....++..+.+.|.-. +. .+|+.+++=....+
T Consensus 167 ~d~~aA~~~v~~l-l~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~-~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 167 RDYPAARENVDQL-LEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLS-DEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred CCchhHHHHHHHH-HHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCC-hHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999888888 3333 2345678889999999999999999999999998765 43 35566666655666
Q ss_pred ChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh-------hHhHHHHHHHHHHh
Q 042593 187 CIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI-------GEEGLKFFDKMVEE 258 (352)
Q Consensus 187 ~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-------~~~a~~~~~~m~~~ 258 (352)
..+.-...|+..... +.++..-.+++.-+.+.|+.++|.++..+-.+.+..|+-..+. ...-.+..++-.+.
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~ 323 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQ 323 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHh
Confidence 666666677777655 4567777888899999999999999999999988888755544 33333344443333
Q ss_pred cCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHHHhcccccCcccccccch
Q 042593 259 CEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRL 325 (352)
Q Consensus 259 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 325 (352)
++..| ..+..|...|.+.+.|.+|.+.|+...+..|+..+|+.+...+...|+.++|.+...+.+
T Consensus 324 h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 324 HPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred CCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 24444 788899999999999999999999777668999999999999999999999998888876
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.35 E-value=2.4e-11 Score=108.38 Aligned_cols=190 Identities=13% Similarity=0.085 Sum_probs=119.5
Q ss_pred CcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC------CCchhHHHHHHHHH-----------
Q 042593 39 YPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE------RNLVTWNVIITGLV----------- 101 (352)
Q Consensus 39 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~------~~~~~~~~~i~~~~----------- 101 (352)
+.++|...|+.... .+.-+.....-+..+|-..+++++|+++|+.+.+ .+...|++.+=.+.
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 44667777777333 3344556677788888888888889888888864 34455444432221
Q ss_pred ----------hHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCC
Q 042593 102 ----------KWTGIIDGYSRMNRSNEALALFRRMAACEYTEP-SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF 170 (352)
Q Consensus 102 ----------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 170 (352)
+|-++.++|.-.++.+.|++.|++..+ +.| ..++|+.+..-+.....+|.|...|+........
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ---ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-- 487 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ---LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-- 487 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc---cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch--
Confidence 577777777777777777777777622 334 4556666666666677777777777665543221
Q ss_pred chhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
+-..|--+.-.|.|.++++.|+-.|+......| +....-.+...+-+.|+.++|++++++....
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l 552 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL 552 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc
Confidence 222333345556677777777777776655533 5555555566666777777777777776654
No 38
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.33 E-value=4.3e-10 Score=92.87 Aligned_cols=201 Identities=13% Similarity=0.063 Sum_probs=149.5
Q ss_pred CchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh
Q 042593 57 SHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE 136 (352)
Q Consensus 57 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 136 (352)
.....+..+...+...|++++|.+.+++..+.++..... +..+...+...|++++|.+.+++..... +.+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-------~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~ 99 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLA-------YLALALYYQQLGELEKAEDSFRRALTLN--PNNG 99 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCH
Confidence 345677788888889999999999998876522221111 7777888888999999999998884322 2344
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHH
Q 042593 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGF 215 (352)
Q Consensus 137 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~ 215 (352)
..+..+...+...|++++|...++...+....+.....+..+..++...|++++|.+.+++.....| +...+..+...+
T Consensus 100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 179 (234)
T TIGR02521 100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELY 179 (234)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHH
Confidence 5677778888889999999999998877543332455677788888899999999999988766544 466788888888
Q ss_pred HcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCC
Q 042593 216 AMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292 (352)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 292 (352)
...|++++|...+++..+. . +.+...+..+...+...|+.++|..+.+.+.
T Consensus 180 ~~~~~~~~A~~~~~~~~~~--~------------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 180 YLRGQYKDARAYLERYQQT--Y------------------------NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHcCCHHHHHHHHHHHHHh--C------------------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 8999999999998887764 1 1245556677788888888888888776654
No 39
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.32 E-value=6e-10 Score=106.67 Aligned_cols=284 Identities=10% Similarity=-0.038 Sum_probs=182.5
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHhCCCCch--hhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHH
Q 042593 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHV--YVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104 (352)
Q Consensus 27 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~ 104 (352)
|...+ ...+.|+++.|++.|++..+.. |+. ..+ .++..+...|+.++|+..+++...|+...+.. .-
T Consensus 38 y~~ai-i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~-------ll 106 (822)
T PRK14574 38 YDSLI-IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRG-------LA 106 (822)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHH-------HH
Confidence 43333 5668889999999998888765 442 233 77888888899999999999988765555322 23
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHh
Q 042593 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK 184 (352)
Q Consensus 105 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 184 (352)
.+...+...|++++|+++|+++.+... -+...+..++..+...++.++|...++.+.+.. | +...+..++..+..
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP--~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p-~~~~~l~layL~~~ 181 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDP--TNPDLISGMIMTQADAGRGGVVLKQATELAERD--P-TVQNYMTLSYLNRA 181 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--c-chHHHHHHHHHHHh
Confidence 335577788999999999999854332 223455677788888899999998888887763 3 44445455555545
Q ss_pred hCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHH--------------------------------
Q 042593 185 CGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERM-------------------------------- 231 (352)
Q Consensus 185 ~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m-------------------------------- 231 (352)
.++..+|++.++++....| +...+..+..++.+.|-...|.++.++-
T Consensus 182 ~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 182 TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 6666668888888877655 4566666677777776655555544431
Q ss_pred ----------------Hhc-CCCCCcchh-h---------------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc
Q 042593 232 ----------------QKV-GLKPNRSWR-I---------------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERA 278 (352)
Q Consensus 232 ----------------~~~-~~~p~~~~~-~---------------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 278 (352)
... +-.|..... . ..++.+.++.+... +.+.-..+-..+.++|...
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~-~~~~P~y~~~a~adayl~~ 340 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE-GYKMPDYARRWAASAYIDR 340 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc-CCCCCHHHHHHHHHHHHhc
Confidence 110 111211111 0 66666666666665 4443344556677777777
Q ss_pred CChhHHHHHHhcCCCC-------CCCchhhHHHHHHHHhcccccCcccccccchhh
Q 042593 279 GRLEQAEEVASGIPSQ-------ITNVVVWRTGFLRLLINSYFFSPITLNSQRLFF 327 (352)
Q Consensus 279 g~~~~A~~~~~~m~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 327 (352)
+.+++|..+++.+... +++......|.-+|...+++++|..+.......
T Consensus 341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 7777777777766432 112222355677777777777777777666543
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.29 E-value=2.5e-09 Score=96.16 Aligned_cols=247 Identities=11% Similarity=-0.044 Sum_probs=174.4
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHhCCCCchh--hHHHHHHHHHhcCChhHHHHHhccCCC--C-CchhHHHHHHHHHh
Q 042593 28 SFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY--VNTALGDMYVSLGFLKDSSKLFDELPE--R-NLVTWNVIITGLVK 102 (352)
Q Consensus 28 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~~i~~~~~ 102 (352)
-....+..+.|+.+.|.+.++...+.. |+.. ..-.....+...|+++.|...++.+.+ | +...
T Consensus 122 llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~---------- 189 (409)
T TIGR00540 122 IKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEV---------- 189 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH----------
Confidence 334567778899999999999987654 4443 344457888899999999999999886 4 3333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHH-HHHHHH---HhCCChhhHHHHHHHHHhcCCC--CCchhhHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL-AVLPAI---WKNGEVRNCQLIHGYGEKRGFN--AFDIHVSN 176 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~-~ll~~~---~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 176 (352)
+..+...+...|++++|.+++..+ .+.++. +...+. .-..+. ...+..+.+...+..+.+.... +.+...+.
T Consensus 190 l~ll~~~~~~~~d~~~a~~~l~~l-~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~ 267 (409)
T TIGR00540 190 LKLAEEAYIRSGAWQALDDIIDNM-AKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKI 267 (409)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH-HHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHH
Confidence 778889999999999999999999 544432 322221 111111 2222222233344444333221 12778888
Q ss_pred HHHHHHHhhCChHHHHHHHHHhccCCCCHhh---HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcc--hhh-------
Q 042593 177 CLIDTYAKCGCIFSASKLFEDTSVDRKNLVS---WTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS--WRI------- 244 (352)
Q Consensus 177 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~------- 244 (352)
.+...+...|+.+.|.+++++..+..||... ...........++.+.+.+.++...+. .|+.. .+.
T Consensus 268 ~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~ 345 (409)
T TIGR00540 268 ALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLL 345 (409)
T ss_pred HHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHH
Confidence 9999999999999999999998877666542 122222334567888999999887764 45555 432
Q ss_pred -----hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcC
Q 042593 245 -----GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291 (352)
Q Consensus 245 -----~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 291 (352)
+++|.+.|++.... ...|+...+..+...+.+.|+.++|.+++++-
T Consensus 346 ~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 346 MKHGEFIEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHcccHHHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88999999964444 56799999999999999999999999999864
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.27 E-value=2.7e-09 Score=98.54 Aligned_cols=298 Identities=15% Similarity=0.099 Sum_probs=219.8
Q ss_pred ccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHH
Q 042593 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104 (352)
Q Consensus 25 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~ 104 (352)
...-...+.+...|+.++|.+++.+.++.. +.+...|-.|...|-..|+.+++...+-..-.-++..+.- |-
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~-------W~ 211 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYEL-------WK 211 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHH-------HH
Confidence 333334444455699999999999999887 6688899999999999999999987665443322222211 88
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHH----HHHH
Q 042593 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN----CLID 180 (352)
Q Consensus 105 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~li~ 180 (352)
.+..-..+.|+++.|.-.|.+..+.. +++...+---...|-+.|+...|...+.++.....+. +..-+. ..++
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~-d~er~~d~i~~~~~ 288 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV-DIERIEDLIRRVAH 288 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch-hHHHHHHHHHHHHH
Confidence 89999999999999999999994433 2455555566677889999999999999998876533 443333 3456
Q ss_pred HHHhhCChHHHHHHHHHhccC---CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh-------------
Q 042593 181 TYAKCGCIFSASKLFEDTSVD---RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI------------- 244 (352)
Q Consensus 181 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------- 244 (352)
.+...++.+.|.+.++...+. ..+...+++++..|.+...++.|......+.....++|..-+.
T Consensus 289 ~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~ 368 (895)
T KOG2076|consen 289 YFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALC 368 (895)
T ss_pred HHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccc
Confidence 677788889999999886653 3456778899999999999999999998888754455544331
Q ss_pred ------------------------hHhHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHHcCChhHHHHHHhcCCCC--CC
Q 042593 245 ------------------------GEEGLKFFDKMVEECEVLP--DIKHYGCLIDILERAGRLEQAEEVASGIPSQ--IT 296 (352)
Q Consensus 245 ------------------------~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~ 296 (352)
.+....+....... .+.| +...|.-+..+|...|++.+|..+|..+... -.
T Consensus 369 ~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~ 447 (895)
T KOG2076|consen 369 EVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ 447 (895)
T ss_pred cCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc
Confidence 22333333333443 4333 4567788888999999999999999888777 34
Q ss_pred CchhhHHHHHHHHhcccccCcccccccchhhhhhHHHH
Q 042593 297 NVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAALYA 334 (352)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 334 (352)
+...|-.+..+|...|.+++|++.+...+..-|..+-+
T Consensus 448 ~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~ 485 (895)
T KOG2076|consen 448 NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDA 485 (895)
T ss_pred chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhh
Confidence 56688888888999999999988888887766665444
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=5.3e-10 Score=95.90 Aligned_cols=252 Identities=12% Similarity=0.079 Sum_probs=151.1
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCC------CchhHHHHHHHHHhHH
Q 042593 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPER------NLVTWNVIITGLVKWT 104 (352)
Q Consensus 31 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~~~~~~i~~~~~~~ 104 (352)
..++.+....+++..=.+.+...|++.+...-+-...+.-...+++.|+.+|+++.+. |..+ |+
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdl----------yS 303 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDL----------YS 303 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHH----------Hh
Confidence 3555566677777777788888887766665555556666778899999999998763 3445 33
Q ss_pred HHHHHHHhcCCHH-HHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q 042593 105 GIIDGYSRMNRSN-EALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183 (352)
Q Consensus 105 ~li~~~~~~~~~~-~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 183 (352)
.++-.-.....+. -|..++ .-+ +--..|+..+.+-|+-.++.++|...|++..+.+.. ....|+.+.+=|.
T Consensus 304 N~LYv~~~~skLs~LA~~v~----~id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~--~~~aWTLmGHEyv 375 (559)
T KOG1155|consen 304 NVLYVKNDKSKLSYLAQNVS----NID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK--YLSAWTLMGHEYV 375 (559)
T ss_pred HHHHHHhhhHHHHHHHHHHH----Hhc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc--hhHHHHHhhHHHH
Confidence 3332221111111 111111 111 122345556666666666666666666666665544 4556666666666
Q ss_pred hhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCC
Q 042593 184 KCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVL 262 (352)
Q Consensus 184 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~ 262 (352)
...+...|.+-++...+. +.|-..|-.|-++|.-.+.+.=|+-.|++..+ ++|
T Consensus 376 EmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kP------------------------ 429 (559)
T KOG1155|consen 376 EMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKP------------------------ 429 (559)
T ss_pred HhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCC------------------------
Confidence 666666666666665544 34566666666666666666666666666554 222
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCcccccccchh
Q 042593 263 PDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQRLF 326 (352)
Q Consensus 263 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 326 (352)
-|...|.+|.++|.+.++.++|.+.|.+.... ..+...+..|...|-+.++.++|.+.+..-+.
T Consensus 430 nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 430 NDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred CchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 26667777777777777777777777665544 23445666666777777776666666655543
No 43
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=5e-10 Score=92.04 Aligned_cols=228 Identities=11% Similarity=-0.010 Sum_probs=187.6
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHHHHhHHH
Q 042593 28 SFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGLVKWTG 105 (352)
Q Consensus 28 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~~~~~~~ 105 (352)
+.+.+.|.+.|.+.+|.+.++...+.. |-+.||-.|-++|.+..+++.|+.+|.+-.+ |..+|+ ..-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~---------l~g 295 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTY---------LLG 295 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhh---------hhh
Confidence 467888999999999999998887764 7778888899999999999999999998775 555553 445
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhh
Q 042593 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC 185 (352)
Q Consensus 106 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 185 (352)
+.+.+-..++.++|.++|+...+... .++.....+...|.-.++.+-|..+|+++.+.|+. ++..|+.+.-+|.-.
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~~--~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~--speLf~NigLCC~ya 371 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLHP--INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ--SPELFCNIGLCCLYA 371 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcCC--ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC--ChHHHhhHHHHHHhh
Confidence 66777788999999999999866543 35566777778888889999999999999999988 789999999999999
Q ss_pred CChHHHHHHHHHhccC--CCC--HhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCC
Q 042593 186 GCIFSASKLFEDTSVD--RKN--LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEV 261 (352)
Q Consensus 186 g~~~~a~~~~~~~~~~--~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~ 261 (352)
+++|-++..|.+.... .|+ ...|..+-......|++..|.+.|+-.... -
T Consensus 372 qQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--------------------------d 425 (478)
T KOG1129|consen 372 QQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--------------------------D 425 (478)
T ss_pred cchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--------------------------C
Confidence 9999999999886544 343 466888888888999999999999887653 2
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCC
Q 042593 262 LPDIKHYGCLIDILERAGRLEQAEEVASGIPSQIT 296 (352)
Q Consensus 262 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 296 (352)
.-+...++.|.-.-.+.|++++|..+++......|
T Consensus 426 ~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 426 AQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 23677899998888999999999999998776633
No 44
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.24 E-value=2.3e-10 Score=102.20 Aligned_cols=203 Identities=10% Similarity=0.031 Sum_probs=168.3
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHh
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~ 102 (352)
.+.+|+.+.+.|.-.++.+.|++.|+...... +-..++|+.+.+-+.....+|+|...|+.....|+..||+
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnA------- 491 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNA------- 491 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHH-------
Confidence 67899999999999999999999999888765 3378899999998999999999999999999999999998
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEP-SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 181 (352)
|.-+.-.|.+.++++.|+-.|++. ..- .| +.+....+...+.+.|+.++|..++++....... ++..--.....
T Consensus 492 wYGlG~vy~Kqek~e~Ae~~fqkA-~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k--n~l~~~~~~~i 566 (638)
T KOG1126|consen 492 WYGLGTVYLKQEKLEFAEFHFQKA-VEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK--NPLCKYHRASI 566 (638)
T ss_pred HHhhhhheeccchhhHHHHHHHhh-hcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC--CchhHHHHHHH
Confidence 888999999999999999999988 433 34 4456667777788899999999999998887655 55555566677
Q ss_pred HHhhCChHHHHHHHHHhccCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Q 042593 182 YAKCGCIFSASKLFEDTSVDRKN-LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238 (352)
Q Consensus 182 ~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 238 (352)
+...+++++|+..+++++...|+ ...|..+...|.+.|+.+.|..-|.-+.+...++
T Consensus 567 l~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 88889999999999999877664 5667778889999999999998888888765444
No 45
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.23 E-value=2.9e-09 Score=95.68 Aligned_cols=243 Identities=16% Similarity=0.118 Sum_probs=178.8
Q ss_pred ccHHHHHHHHHhcCCcchHHHHHHHHHHh-----CC-CCchh-hHHHHHHHHHhcCChhHHHHHhccCCC-------CCc
Q 042593 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKV-----GF-QSHVY-VNTALGDMYVSLGFLKDSSKLFDELPE-------RNL 90 (352)
Q Consensus 25 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~-------~~~ 90 (352)
.+...+...|...|+++.|..++++..+. |. .|... ..+.+...|...+++++|..+|+++.. ++.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44555889999999999999999988765 21 23443 355588899999999999999998863 333
Q ss_pred hhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhH----hccCCC-CChh-hHHHHHHHHHhCCChhhHHHHHHHHHh
Q 042593 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA----ACEYTE-PSEI-TILAVLPAIWKNGEVRNCQLIHGYGEK 164 (352)
Q Consensus 91 ~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~~-p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~ 164 (352)
...-+. ++.|...|.+.|++++|...+++.. +..+.. |... -++.+...+...+++++|..+++...+
T Consensus 280 ~~va~~------l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 280 PAVAAT------LNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred HHHHHH------HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 222221 8888899999999999988888752 122222 2332 477788889999999999999987754
Q ss_pred c-----CCCC-CchhhHHHHHHHHHhhCChHHHHHHHHHhccC--------CC-CHhhHHHHHHHHHcCCCHHHHHHHHH
Q 042593 165 R-----GFNA-FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD--------RK-NLVSWTTIISGFAMHGMGKEAVENFE 229 (352)
Q Consensus 165 ~-----~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~-~~~~~~~li~~~~~~~~~~~a~~~~~ 229 (352)
. |... ....+++.|...|.+.|++++|++++++.... .+ .-..++.|...|.+.+++.+|.++|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 3 2111 13678999999999999999999999986543 12 23567888899999999999999999
Q ss_pred HHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCC
Q 042593 230 RMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292 (352)
Q Consensus 230 ~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 292 (352)
+-..- . ..... +.+-...+|..|...|.+.|++++|.++.+...
T Consensus 434 ~~~~i-----------------~-~~~g~-~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 434 EAKDI-----------------M-KLCGP-DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHH-----------------H-HHhCC-CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 86542 1 11100 222235789999999999999999999877654
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.23 E-value=1.6e-08 Score=83.22 Aligned_cols=257 Identities=11% Similarity=0.115 Sum_probs=186.2
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhC-CCC--chhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG-FQS--HVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~ 99 (352)
+..+--++.+.+.+.|.++.|+.+++.+.++. .+- -....-.|..-|...|-+|.|+.+|..+.+.+...-++
T Consensus 68 t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~A---- 143 (389)
T COG2956 68 TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGA---- 143 (389)
T ss_pred hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHH----
Confidence 34444567788889999999999999988643 111 12345567788889999999999999998755554455
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh----hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhH
Q 042593 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI----TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS 175 (352)
Q Consensus 100 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 175 (352)
.-.|+..|-...+|++|+++-+++.+ .+.++... -|--+...+....+.+.|...++...+.+.. .+..-
T Consensus 144 ---lqqLl~IYQ~treW~KAId~A~~L~k-~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~--cvRAs 217 (389)
T COG2956 144 ---LQQLLNIYQATREWEKAIDVAERLVK-LGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKK--CVRAS 217 (389)
T ss_pred ---HHHHHHHHHHhhHHHHHHHHHHHHHH-cCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc--ceehh
Confidence 67889999999999999999998844 33333322 3555666666678899999999998887655 45555
Q ss_pred HHHHHHHHhhCChHHHHHHHHHhccCCCC--HhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh---------
Q 042593 176 NCLIDTYAKCGCIFSASKLFEDTSVDRKN--LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI--------- 244 (352)
Q Consensus 176 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--------- 244 (352)
-.+.+.....|+++.|.+.++.+....|+ ..+...|..+|...|+.++....+.++.+....++..-..
T Consensus 218 i~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G 297 (389)
T COG2956 218 IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEG 297 (389)
T ss_pred hhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhC
Confidence 57888999999999999999999877775 4678899999999999999999999988864444432222
Q ss_pred hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc---CChhHHHHHHhcCC
Q 042593 245 GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERA---GRLEQAEEVASGIP 292 (352)
Q Consensus 245 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~ 292 (352)
.+.|..++.+-..+ +|+...+..+|..-..- |...+-..+++.|.
T Consensus 298 ~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 298 IDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred hHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 44555444443333 57777777777765532 23344444555543
No 47
>PRK12370 invasion protein regulator; Provisional
Probab=99.19 E-value=6.7e-09 Score=97.01 Aligned_cols=198 Identities=9% Similarity=-0.070 Sum_probs=130.3
Q ss_pred CcccHHHHHHHHHh-----cCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHh---------cCChhHHHHHhccCCCC
Q 042593 23 DSFTYSFLIRTCVT-----LSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS---------LGFLKDSSKLFDELPER 88 (352)
Q Consensus 23 ~~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~ 88 (352)
+...|...+++-.. .++.++|...+++..+.. +-+...|..+..++.. .+++++|...+++..+-
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 44555566665432 233467788888777654 3345566666555442 23467888888877652
Q ss_pred CchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCC
Q 042593 89 NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS-EITILAVLPAIWKNGEVRNCQLIHGYGEKRGF 167 (352)
Q Consensus 89 ~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 167 (352)
++....+ |..+...+...|++++|...|++..+. .|+ ...+..+..++...|+.++|...+++..+...
T Consensus 334 dP~~~~a-------~~~lg~~~~~~g~~~~A~~~~~~Al~l---~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P 403 (553)
T PRK12370 334 DHNNPQA-------LGLLGLINTIHSEYIVGSLLFKQANLL---SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDP 403 (553)
T ss_pred CCCCHHH-------HHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 2221111 666667777888888888888888442 344 44677777888888888888888888887754
Q ss_pred CCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC-CC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 168 NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-RK-NLVSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 168 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
. +...+..++..+...|++++|...+++.... .| +...+..+..++...|+.++|...+.++..
T Consensus 404 ~--~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 404 T--RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred C--ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 4 3333334444566678888888888876544 34 344566677778888888888888877654
No 48
>PRK12370 invasion protein regulator; Provisional
Probab=99.13 E-value=1.5e-08 Score=94.59 Aligned_cols=183 Identities=9% Similarity=0.003 Sum_probs=139.5
Q ss_pred CCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHH
Q 042593 38 SYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSN 117 (352)
Q Consensus 38 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~ 117 (352)
+++++|...++...+.. +-+...+..+..++...|++++|+..|++..+.++..... |..+...+...|+++
T Consensus 318 ~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a-------~~~lg~~l~~~G~~~ 389 (553)
T PRK12370 318 NAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADI-------KYYYGWNLFMAGQLE 389 (553)
T ss_pred hHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHH
Confidence 44788999999988876 5577888889999999999999999999987632222111 777888999999999
Q ss_pred HHHHHHHHhHhccCCCCCh-hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHH
Q 042593 118 EALALFRRMAACEYTEPSE-ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196 (352)
Q Consensus 118 ~a~~~~~~m~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 196 (352)
+|...+++..+.. |+. ..+..++..+...|++++|...+++..+...+. ++..+..+..++...|+.++|...++
T Consensus 390 eAi~~~~~Al~l~---P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~-~~~~~~~la~~l~~~G~~~eA~~~~~ 465 (553)
T PRK12370 390 EALQTINECLKLD---PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQD-NPILLSMQVMFLSLKGKHELARKLTK 465 (553)
T ss_pred HHHHHHHHHHhcC---CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcccc-CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999995533 432 233344555667899999999999987664332 56667788889999999999999999
Q ss_pred HhccCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 197 DTSVDRKN-LVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 197 ~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
++....|+ ....+.+...|+..| ++|...++.+.+.
T Consensus 466 ~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 466 EISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 98666555 444566666778877 4888878776653
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=9.2e-08 Score=82.50 Aligned_cols=193 Identities=11% Similarity=0.012 Sum_probs=142.1
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHhCCCC---chhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHH
Q 042593 28 SFLIRTCVTLSYPNLGTQLHAVFSKVGFQS---HVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104 (352)
Q Consensus 28 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~ 104 (352)
+....+.-...++++|+.+|++..+.. +- |..+|+.++-.-..+.++.--....-.+.+-.+.| +.
T Consensus 266 ~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ET----------CC 334 (559)
T KOG1155|consen 266 TQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPET----------CC 334 (559)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccc----------ee
Confidence 333344456889999999999999874 22 66788877765544444433222222333334445 56
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q 042593 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPS-EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183 (352)
Q Consensus 105 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 183 (352)
++.+-|+-.++.++|...|++.++. .|. ...|+.+..-|...++...|..-++..++.... |-..|-.|.++|.
T Consensus 335 iIaNYYSlr~eHEKAv~YFkRALkL---Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~--DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 335 IIANYYSLRSEHEKAVMYFKRALKL---NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR--DYRAWYGLGQAYE 409 (559)
T ss_pred eehhHHHHHHhHHHHHHHHHHHHhc---CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch--hHHHHhhhhHHHH
Confidence 6667788888899999999888542 233 457888888888889999999988888876544 7788888889998
Q ss_pred hhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 042593 184 KCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236 (352)
Q Consensus 184 ~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 236 (352)
-.+...-|+-.|++...-.| |...|.+|-.+|.+.++.++|...|++....|-
T Consensus 410 im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 88888888888888765544 788899999999999999999999988887653
No 50
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.12 E-value=4.8e-09 Score=94.28 Aligned_cols=243 Identities=13% Similarity=0.084 Sum_probs=177.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHhccCCCC-------CchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhc--
Q 042593 59 VYVNTALGDMYVSLGFLKDSSKLFDELPER-------NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC-- 129 (352)
Q Consensus 59 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-- 129 (352)
..+...|...|...|+++.|+.+++...+. +......+ .+.+...|...+++++|..+|+++..-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~------l~~~a~~y~~~~k~~eAv~ly~~AL~i~e 272 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASM------LNILALVYRSLGKYDEAVNLYEEALTIRE 272 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHH------HHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 467777999999999999999999986531 22221222 556778899999999999999998321
Q ss_pred --cC-CCCCh-hhHHHHHHHHHhCCChhhHHHHHHHHHhc-----CCCCCc-hhhHHHHHHHHHhhCChHHHHHHHHHhc
Q 042593 130 --EY-TEPSE-ITILAVLPAIWKNGEVRNCQLIHGYGEKR-----GFNAFD-IHVSNCLIDTYAKCGCIFSASKLFEDTS 199 (352)
Q Consensus 130 --~~-~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 199 (352)
.| -.|.. .+++.|..+|.+.|++++|...++...+. |..++. ...++.+...++..++++.|..+++...
T Consensus 273 ~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 273 EVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 22 23333 37888888999999999998887776532 222212 2355677888999999999999998743
Q ss_pred cC--------CC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHH
Q 042593 200 VD--------RK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGC 270 (352)
Q Consensus 200 ~~--------~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 270 (352)
+. .+ -..+++.|-..|...|++++|++++++.+... +..... ...-....++.
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~-----------------~~~~~~-~~~~~~~~l~~ 414 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL-----------------RELLGK-KDYGVGKPLNQ 414 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH-----------------HhcccC-cChhhhHHHHH
Confidence 32 21 24779999999999999999999999976521 111110 12223567888
Q ss_pred HHHHHHHcCChhHHHHHHhcCCCC-------C-CCchhhHHHHHHHHhcccccCcccccccch
Q 042593 271 LIDILERAGRLEQAEEVASGIPSQ-------I-TNVVVWRTGFLRLLINSYFFSPITLNSQRL 325 (352)
Q Consensus 271 li~~~~~~g~~~~A~~~~~~m~~~-------~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 325 (352)
|...|.+.++.++|.++|.+.... . ....+|..|...|-..|++++|+++....+
T Consensus 415 la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 415 LAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999999999999999998765432 2 334689999999999999999999877654
No 51
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.11 E-value=6.2e-09 Score=96.93 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=63.5
Q ss_pred hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCccccccc
Q 042593 245 GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQ 323 (352)
Q Consensus 245 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 323 (352)
.+.|+++|.+.++. .+-|...-|-+.-.++..|++.+|..+|...++. ..+..+|-.+...|+.+|++..|++.+..
T Consensus 628 ~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 67778888877763 3446777788888888899999999999888766 44667888889999999999988888877
Q ss_pred chhh
Q 042593 324 RLFF 327 (352)
Q Consensus 324 ~~~~ 327 (352)
.+..
T Consensus 706 ~lkk 709 (1018)
T KOG2002|consen 706 CLKK 709 (1018)
T ss_pred HHHH
Confidence 6543
No 52
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.08 E-value=1.5e-07 Score=84.53 Aligned_cols=295 Identities=12% Similarity=0.043 Sum_probs=226.3
Q ss_pred CCCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCC--chhhHHHHHHHHHhcCChhHHHHHhccCCCC---C
Q 042593 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQS--HVYVNTALGDMYVSLGFLKDSSKLFDELPER---N 89 (352)
Q Consensus 15 ~g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~ 89 (352)
.|+.- |...|-.=...|-+.|.+-.++.+....+..|+.- -..||+.-...|.+.+.++-|..+|....+- +
T Consensus 473 ngv~i---~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k 549 (913)
T KOG0495|consen 473 NGVEI---NRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCK 549 (913)
T ss_pred cceee---cHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccch
Confidence 55566 66667677777777777777777777777777643 2357777777788888888888888877652 2
Q ss_pred chhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCC
Q 042593 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNA 169 (352)
Q Consensus 90 ~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 169 (352)
... |......--..|..++...+|++.... .+-....|.......-..|++..|..++.+.-+....
T Consensus 550 ~sl----------Wlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn- 616 (913)
T KOG0495|consen 550 KSL----------WLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN- 616 (913)
T ss_pred hHH----------HHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-
Confidence 233 777766667778888888999888332 2234445666677777889999999999998887644
Q ss_pred CchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh-----
Q 042593 170 FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI----- 244 (352)
Q Consensus 170 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----- 244 (352)
+...|-.-+.....+.+++.|..+|.+.....|+...|..-+..---.++.++|.+++++-++. -|+-.-+.
T Consensus 617 -seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 617 -SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQ 693 (913)
T ss_pred -cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhH
Confidence 7889999999999999999999999999878899888888888778889999999999887764 34432222
Q ss_pred -------hHhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhccccc
Q 042593 245 -------GEEGLKFFDKMVEECEVLP-DIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFF 315 (352)
Q Consensus 245 -------~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~ 315 (352)
.+.|...|..=. ...| ....|-.|.+.=-+.|.+-+|..++++..-+ +.|...|-..|..=.+.|+.+
T Consensus 694 i~e~~~~ie~aR~aY~~G~---k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGT---KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred HHHHHHHHHHHHHHHHhcc---ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence 444444443322 2234 4557777888888999999999999998877 788899999999999999999
Q ss_pred CcccccccchhhhhhH
Q 042593 316 SPITLNSQRLFFFPAA 331 (352)
Q Consensus 316 ~a~~~~~~~~~~~~~~ 331 (352)
.|..++.++++.+|.+
T Consensus 771 ~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 771 QAELLMAKALQECPSS 786 (913)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 9999999999999876
No 53
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.07 E-value=6.7e-08 Score=89.58 Aligned_cols=295 Identities=11% Similarity=-0.002 Sum_probs=211.7
Q ss_pred CCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHH
Q 042593 21 LFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGL 100 (352)
Q Consensus 21 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~ 100 (352)
|++...|-+|...+-..|+.+.+...+-...-. .+.|...|..+.+...+.|+++.|.-.|.+..+.++..|-.
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~----- 243 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWEL----- 243 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHH-----
Confidence 347788999999999999999887654333322 25577899999999999999999999999998754444333
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh----hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHH
Q 042593 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI----TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN 176 (352)
Q Consensus 101 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 176 (352)
+---...|-+.|+...|.+-|.++....+ +.|.. +.-.+++.+...++.+.|.+.++.....+....+...++
T Consensus 244 --~~ers~L~~~~G~~~~Am~~f~~l~~~~p-~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~n 320 (895)
T KOG2076|consen 244 --IYERSSLYQKTGDLKRAMETFLQLLQLDP-PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLN 320 (895)
T ss_pred --HHHHHHHHHHhChHHHHHHHHHHHHhhCC-chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHH
Confidence 44455678899999999999999955433 22222 334556677778888888888887776433322677889
Q ss_pred HHHHHHHhhCChHHHHHHHHHhccC------------------------CCCHhhHH----HHHHHHHcCCCHHHHHHHH
Q 042593 177 CLIDTYAKCGCIFSASKLFEDTSVD------------------------RKNLVSWT----TIISGFAMHGMGKEAVENF 228 (352)
Q Consensus 177 ~li~~~~~~g~~~~a~~~~~~~~~~------------------------~~~~~~~~----~li~~~~~~~~~~~a~~~~ 228 (352)
.++..|.+...++.|......+... .|+...|+ .++-++...+..+....+.
T Consensus 321 i~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll 400 (895)
T KOG2076|consen 321 ILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALL 400 (895)
T ss_pred HHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHH
Confidence 9999999999999998888776540 11111121 1223344444455555555
Q ss_pred HHHHhcCCCCCcchhh-------------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-
Q 042593 229 ERMQKVGLKPNRSWRI-------------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ- 294 (352)
Q Consensus 229 ~~m~~~~~~p~~~~~~-------------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 294 (352)
....+..+.|....-. +++|+.++..+... ...-+...|-.+..+|...|..++|.+.++.....
T Consensus 401 ~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~ 479 (895)
T KOG2076|consen 401 HFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA 479 (895)
T ss_pred HHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 5555655444433222 88899999888876 22234678889999999999999999999988777
Q ss_pred CCCchhhHHHHHHHHhcccccCcccccccch
Q 042593 295 ITNVVVWRTGFLRLLINSYFFSPITLNSQRL 325 (352)
Q Consensus 295 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 325 (352)
+-+.-.--+|-.-+...|+.++|.+...+..
T Consensus 480 p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 480 PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 5566677777788889999999998888753
No 54
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=2.7e-08 Score=86.21 Aligned_cols=206 Identities=13% Similarity=-0.032 Sum_probs=125.9
Q ss_pred CCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHH
Q 042593 114 NRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASK 193 (352)
Q Consensus 114 ~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 193 (352)
|+.-.|..-|+.......-.++ .|--+..+|....+.++....|+.....+.. ++.+|..-...+.-.++++.|..
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~--lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~--n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNS--LYIKRAAAYADENQSEKMWKDFNKAEDLDPE--NPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred CCchhhhhhHHHHHhcCcccch--HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC--CCchhHhHHHHHHHHHHHHHHHH
Confidence 4555555555555222211111 1555556677777777777777776665544 56666666666666677777777
Q ss_pred HHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh-----------hHhHHHHHHHHHHh---
Q 042593 194 LFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI-----------GEEGLKFFDKMVEE--- 258 (352)
Q Consensus 194 ~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-----------~~~a~~~~~~m~~~--- 258 (352)
=|++.....| ++..|-.+.-+..+.+++++++..|++.++. ++.....++ ++.|.+.|+..++.
T Consensus 416 DF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 416 DFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 7776655544 4555666666666667777777777776654 222222222 66666666665543
Q ss_pred -cCCC--CChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCcccccccch
Q 042593 259 -CEVL--PDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQRL 325 (352)
Q Consensus 259 -~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 325 (352)
+++. +.+.+--.++..-.+ +++..|.++++...+. +.....|.+|...-+..|+.++|+++|....
T Consensus 495 ~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 0111 112222233333333 8889999999888877 6667788888888899999999998888764
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.05 E-value=7e-09 Score=95.67 Aligned_cols=248 Identities=13% Similarity=0.079 Sum_probs=166.1
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHH
Q 042593 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFR 124 (352)
Q Consensus 45 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~ 124 (352)
.++..+...|+.||..||..+|.-||..|+++.|- +|.-|+-++..+-..+ ++.++.+...+++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~v------f~~lv~sh~~And~Enpk---- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGV------FRGLVASHKEANDAENPK---- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchh------HHHHHhcccccccccCCC----
Confidence 56778889999999999999999999999999999 9998876443332222 888888888888776553
Q ss_pred HhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHH-------hcCCCCC-------------chhhHHHHHHHHHh
Q 042593 125 RMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGE-------KRGFNAF-------------DIHVSNCLIDTYAK 184 (352)
Q Consensus 125 ~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~~~~~-------------~~~~~~~li~~~~~ 184 (352)
.|...||..++.+|...||+..-..+-+.+. ..|...+ ....-...+....-
T Consensus 80 --------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~ 151 (1088)
T KOG4318|consen 80 --------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVL 151 (1088)
T ss_pred --------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHH
Confidence 6888899999999999999765332222222 2232210 11111233444445
Q ss_pred hCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh-----------hHhHHHHHH
Q 042593 185 CGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI-----------GEEGLKFFD 253 (352)
Q Consensus 185 ~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-----------~~~a~~~~~ 253 (352)
.|-++.+++++..+.....+. ++..+++-+.... ....++.+..+...-.|+..++. .+.|..++.
T Consensus 152 eglwaqllkll~~~Pvsa~~~-p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~ 228 (1088)
T KOG4318|consen 152 EGLWAQLLKLLAKVPVSAWNA-PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLY 228 (1088)
T ss_pred HHHHHHHHHHHhhCCcccccc-hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHH
Confidence 556666666666554331111 1111233332222 22333333332221147766666 899999999
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC--CCCchhhHHHHHHHHhcccccCcc
Q 042593 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ--ITNVVVWRTGFLRLLINSYFFSPI 318 (352)
Q Consensus 254 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~li~~~~~~g~~~~a~ 318 (352)
.|++. |++.+..-|..|+-+ .|+...++.+++.|... .|+..|+...+..+..+|+...+-
T Consensus 229 emke~-gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~ 291 (1088)
T KOG4318|consen 229 EMKEK-GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE 291 (1088)
T ss_pred HHHHc-CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc
Confidence 99999 999998877777765 88888999999999887 899999999888888877644433
No 56
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=7.3e-07 Score=76.04 Aligned_cols=294 Identities=9% Similarity=-0.034 Sum_probs=210.7
Q ss_pred CcccHHHHHHHHHh--cCCcchHHHHHHHHHHh-CCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHH
Q 042593 23 DSFTYSFLIRTCVT--LSYPNLGTQLHAVFSKV-GFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~--~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~ 99 (352)
+-.+....+.+++. .++-..+...+-.+... -++-|++....+.+++...|+.++|+..|++...-|+.+..++
T Consensus 193 ~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M--- 269 (564)
T KOG1174|consen 193 HFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM--- 269 (564)
T ss_pred CccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH---
Confidence 55556666666654 44444455555444433 4566888999999999999999999999998776444432221
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHH
Q 042593 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179 (352)
Q Consensus 100 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 179 (352)
..|..| +.+.|+.+....+...+.... .-+...|..-.......++++.|..+-+...+.+.. +...+-.-.
T Consensus 270 -D~Ya~L---L~~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r--~~~alilKG 341 (564)
T KOG1174|consen 270 -DLYAVL---LGQEGGCEQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR--NHEALILKG 341 (564)
T ss_pred -HHHHHH---HHhccCHhhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc--cchHHHhcc
Confidence 114444 456788887777777762211 122333444444555678888898888887766544 566666667
Q ss_pred HHHHhhCChHHHHHHHHHhccCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh-------------h
Q 042593 180 DTYAKCGCIFSASKLFEDTSVDR-KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI-------------G 245 (352)
Q Consensus 180 ~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-------------~ 245 (352)
+++...|+.+.|.=.|+....-. -+...|.-|+++|...|++.+|.-+-+...+. +..+..+.. -
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhH
Confidence 78889999999999999876555 58899999999999999999998877765442 122222222 6
Q ss_pred HhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHHHhcccccCcccccccc
Q 042593 246 EEGLKFFDKMVEECEVLPD-IKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQR 324 (352)
Q Consensus 246 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 324 (352)
+.|..++++-. .+.|+ ....+.+...+...|+.+++..++++.....||....+.|...+.....+++|++.+.-+
T Consensus 421 EKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 421 EKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 77888888755 34554 346677888899999999999999987766899999999999999999999999988887
Q ss_pred hhhhhhH
Q 042593 325 LFFFPAA 331 (352)
Q Consensus 325 ~~~~~~~ 331 (352)
+..-|..
T Consensus 498 Lr~dP~~ 504 (564)
T KOG1174|consen 498 LRQDPKS 504 (564)
T ss_pred HhcCccc
Confidence 7655544
No 57
>PF12854 PPR_1: PPR repeat
Probab=98.98 E-value=6.7e-10 Score=60.99 Aligned_cols=34 Identities=29% Similarity=0.443 Sum_probs=26.5
Q ss_pred hCCCCchhhHHHHHHHHHhcCChhHHHHHhccCC
Q 042593 53 VGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP 86 (352)
Q Consensus 53 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 86 (352)
+|++||..|||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677888888888888888888888888887774
No 58
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=3.4e-08 Score=83.80 Aligned_cols=246 Identities=12% Similarity=0.024 Sum_probs=131.9
Q ss_pred HHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhc
Q 042593 34 CVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRM 113 (352)
Q Consensus 34 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~ 113 (352)
.--.|++..++.-.+ .....-+.+...-.-+.+++...|+.+.++.-...-..|.... ...+...+...
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~a----------v~~la~y~~~~ 79 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQA----------VRLLAEYLSSP 79 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHH----------HHHHHHHHCTS
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHH----------HHHHHHHHhCc
Confidence 334566666654444 1111111223344456677777777776665555544455554 32222222222
Q ss_pred CCHHHHHHHHHHhHhccCCC-CChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHH
Q 042593 114 NRSNEALALFRRMAACEYTE-PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSAS 192 (352)
Q Consensus 114 ~~~~~a~~~~~~m~~~~~~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 192 (352)
++-+.++.-+++. -..... .+..........+...|++++|.+++... . +.......+.+|.+.++++.|.
T Consensus 80 ~~~e~~l~~l~~~-~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~-~lE~~al~Vqi~L~~~R~dlA~ 151 (290)
T PF04733_consen 80 SDKESALEELKEL-LADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------G-SLELLALAVQILLKMNRPDLAE 151 (290)
T ss_dssp TTHHCHHHHHHHC-CCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------T-CHHHHHHHHHHHHHTT-HHHHH
T ss_pred cchHHHHHHHHHH-HHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------C-cccHHHHHHHHHHHcCCHHHHH
Confidence 3444444444443 222222 22222333334455667777777666532 2 5566667777788888888888
Q ss_pred HHHHHhccCCCCHhhHH---HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHH
Q 042593 193 KLFEDTSVDRKNLVSWT---TIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYG 269 (352)
Q Consensus 193 ~~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~ 269 (352)
+.++.|.+...|....+ +.+......+++++|..+|+++.+ ...+++.+.+
T Consensus 152 k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--------------------------~~~~t~~~ln 205 (290)
T PF04733_consen 152 KELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD--------------------------KFGSTPKLLN 205 (290)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--------------------------CS--SHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--------------------------ccCCCHHHHH
Confidence 88887766555543322 222222223457777777777655 4456777777
Q ss_pred HHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccC-cccccccc
Q 042593 270 CLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFS-PITLNSQR 324 (352)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~ 324 (352)
.+..+....|++++|++++.+.... +.+..+...++......|+..+ +.++..+.
T Consensus 206 g~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 206 GLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 7778888888888888887776655 5566666667777777777643 33344443
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.97 E-value=4.2e-07 Score=77.16 Aligned_cols=237 Identities=15% Similarity=0.081 Sum_probs=173.6
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHH-
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV- 101 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~- 101 (352)
+...+-+..+.....|+.+.|..-.+++.+.+ +.++........+|.+.|++....++..++.+.+..+-..+.+-=-
T Consensus 152 ~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~ 230 (400)
T COG3071 152 TLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQ 230 (400)
T ss_pred hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHH
Confidence 44455555666667777777777777777766 5566777788888888888888888888887632211111000000
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 042593 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181 (352)
Q Consensus 102 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 181 (352)
+|+.+++-....+..+.-...++...... +-+...-.+++.-+.+.|+.++|.++.++..+.+..+ + -...-.
T Consensus 231 a~~glL~q~~~~~~~~gL~~~W~~~pr~l--r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-~----L~~~~~ 303 (400)
T COG3071 231 AWEGLLQQARDDNGSEGLKTWWKNQPRKL--RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-R----LCRLIP 303 (400)
T ss_pred HHHHHHHHHhccccchHHHHHHHhccHHh--hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-h----HHHHHh
Confidence 28888888888888888777888873332 3445566678888999999999999999999998876 4 222334
Q ss_pred HHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcC
Q 042593 182 YAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECE 260 (352)
Q Consensus 182 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~ 260 (352)
+.+-++.+.-++..+.-.+. +-++..+.+|-..|.+++.|.+|.+.|+... .
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl---------------------------~ 356 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAAL---------------------------K 356 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHH---------------------------h
Confidence 45667777777777765544 3456788899999999999999999999665 4
Q ss_pred CCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 261 VLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 261 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
..|+..+|+-+.+++.+.|+..+|.++.++....
T Consensus 357 ~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 357 LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 5689999999999999999999999998876533
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=3.7e-07 Score=80.70 Aligned_cols=251 Identities=11% Similarity=0.034 Sum_probs=186.2
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHh
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~ 102 (352)
....+-.=|..+.+.|+..+-..+=..|++.- |..+.+|-++...|...|+.++|++.|.+...-|..--.+
T Consensus 277 h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpa------- 348 (611)
T KOG1173|consen 277 HLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPA------- 348 (611)
T ss_pred CcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHH-------
Confidence 56667777777778888777666666676654 6677888888888888899999999998876533321111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
|-...++|+-.|..+.|+..|...-+. .+-....+.-+..-|.+.++.+.|.+++.+.... .|.|+.+.+-+.-..
T Consensus 349 Wl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai--~P~Dplv~~Elgvva 424 (611)
T KOG1173|consen 349 WLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI--APSDPLVLHELGVVA 424 (611)
T ss_pred HHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc--CCCcchhhhhhhhee
Confidence 788888888999999998888876221 1112223444555677888999999999887654 444788888887777
Q ss_pred HhhCChHHHHHHHHHhccC-------CC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHH
Q 042593 183 AKCGCIFSASKLFEDTSVD-------RK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDK 254 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~-------~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~ 254 (352)
-..+.+.+|...|+..... .+ ...+++.|-++|.+.+++++|+..+++.+..
T Consensus 425 y~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-------------------- 484 (611)
T KOG1173|consen 425 YTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-------------------- 484 (611)
T ss_pred ehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------------------
Confidence 7788899999888875422 12 4466888889999999999999999987763
Q ss_pred HHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHHHhc
Q 042593 255 MVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLIN 311 (352)
Q Consensus 255 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~ 311 (352)
.+-+..++.++.-.|...|+++.|.+.|.+.....|+..+-..++..++..
T Consensus 485 ------~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 485 ------SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred ------CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 234788899999999999999999999998876677777777777655544
No 61
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=7.8e-08 Score=82.78 Aligned_cols=266 Identities=10% Similarity=0.001 Sum_probs=126.0
Q ss_pred HHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHh--cCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHH
Q 042593 32 RTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS--LGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDG 109 (352)
Q Consensus 32 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~ 109 (352)
..+.+.|+++.|.+++..+.+..-+.-...-+.|-..+.- -.++.+|.+.-+....-|...-.+ ...--+.
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a-------~~nkgn~ 499 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAA-------LTNKGNI 499 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHH-------hhcCCce
Confidence 4577888999988888877665433222222222222221 123444444443333211100000 0000111
Q ss_pred HHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChH
Q 042593 110 YSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189 (352)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 189 (352)
....|++++|.+.|++.+. ....-....| .+--.+...|++++|...|-.+...-.. +..+.-.+.+.|-...+..
T Consensus 500 ~f~ngd~dka~~~ykeal~-ndasc~ealf-niglt~e~~~~ldeald~f~klh~il~n--n~evl~qianiye~led~a 575 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALN-NDASCTEALF-NIGLTAEALGNLDEALDCFLKLHAILLN--NAEVLVQIANIYELLEDPA 575 (840)
T ss_pred eeecCcHHHHHHHHHHHHc-CchHHHHHHH-HhcccHHHhcCHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHhhCHH
Confidence 1234555555555555411 1100001111 1122233445555555444433222111 4444444445555555555
Q ss_pred HHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC-cchhh-----------hHhHHHHHHHHH
Q 042593 190 SASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN-RSWRI-----------GEEGLKFFDKMV 256 (352)
Q Consensus 190 ~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~-----------~~~a~~~~~~m~ 256 (352)
.|.+++-+.... +.|+.....|...|-+.|+-..|++.+-+--+ .-|. ..+.. ++.++.+|++..
T Consensus 576 qaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaa 653 (840)
T KOG2003|consen 576 QAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA 653 (840)
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 555555444333 22444445555555555555555444332111 1111 11100 344444444332
Q ss_pred HhcCCCCChhhHHHHHHHH-HHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhccc
Q 042593 257 EECEVLPDIKHYGCLIDIL-ERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSY 313 (352)
Q Consensus 257 ~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~ 313 (352)
-+.|++.-|..+|..| .+.|++++|.++++.+.++ +.|.....-|+.-+...|-
T Consensus 654 ---liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 654 ---LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ---hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 4678999998887655 5789999999999999888 7777777777776655553
No 62
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.95 E-value=3.9e-08 Score=91.79 Aligned_cols=262 Identities=12% Similarity=0.020 Sum_probs=162.0
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHh---CCCCchh-------hHHHHHHHHHhcCChhHHHHHhccCCCCCchh
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKV---GFQSHVY-------VNTALGDMYVSLGFLKDSSKLFDELPERNLVT 92 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~-------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~ 92 (352)
-+...|.+...+...|++..|...|...... ...++.. -|| |..++-..++.+.|.+.|..+.+..+.-
T Consensus 451 p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilkehp~Y 529 (1018)
T KOG2002|consen 451 PPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKEHPGY 529 (1018)
T ss_pred CHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHCchh
Confidence 5677777777777788888888777776654 1122221 232 3444445567777777777776522211
Q ss_pred HHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCch
Q 042593 93 WNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDI 172 (352)
Q Consensus 93 ~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 172 (352)
|++ |-.+....-..+...+|...+++......-.|+ .++.+.+.+.+...+..|..-+....+.-...+|+
T Consensus 530 ----Id~---ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~--arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~ 600 (1018)
T KOG2002|consen 530 ----IDA---YLRLGCMARDKNNLYEASLLLKDALNIDSSNPN--ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDA 600 (1018)
T ss_pred ----HHH---HHHhhHHHHhccCcHHHHHHHHHHHhcccCCcH--HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCch
Confidence 111 333332333446777788888777444443343 44455556667777777777666555443222255
Q ss_pred hhHHHHHHHHHh------------hCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Q 042593 173 HVSNCLIDTYAK------------CGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239 (352)
Q Consensus 173 ~~~~~li~~~~~------------~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 239 (352)
...-+|.+.|.. .+..++|+++|.+..+. +.|...-|-+.-.++..|++.+|..+|.++.+....-.
T Consensus 601 YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~ 680 (1018)
T KOG2002|consen 601 YSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFE 680 (1018)
T ss_pred hHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCC
Confidence 555555554442 34567788888877665 44777778787888888888888888888887654222
Q ss_pred cchhh----------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 240 RSWRI----------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 240 ~~~~~----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
..+.+ +..|.+.|+...+.+.-.-+....+.|.+++.++|++.+|.+.+......
T Consensus 681 dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 681 DVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred ceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 22222 77777777776666455556677777788888888888887776555544
No 63
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.94 E-value=5.2e-07 Score=71.14 Aligned_cols=195 Identities=13% Similarity=-0.071 Sum_probs=150.0
Q ss_pred cHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--C-CchhHHHHHHHHHh
Q 042593 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--R-NLVTWNVIITGLVK 102 (352)
Q Consensus 26 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~~i~~~~~ 102 (352)
+.-.+.-.|.+.|+...|.+-+++..+.. +.+..++..+...|.+.|..+.|.+-|++..+ | +...
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdV---------- 105 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDV---------- 105 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccch----------
Confidence 45556677888899999999999888877 55667888889999999999999999988664 3 3333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
.|..-.-+|..|++++|...|++........--..||..+.-+..+.|+.+.|...+++..+.... ...+...+.+..
T Consensus 106 LNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~--~~~~~l~~a~~~ 183 (250)
T COG3063 106 LNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ--FPPALLELARLH 183 (250)
T ss_pred hhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC--CChHHHHHHHHH
Confidence 555555678888999999999988443333333458888888888899999999999988887654 566777888888
Q ss_pred HhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 183 AKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
.+.|++-.|...++..... .++..+.-..|..-...|+.+.+-+.=..+.+
T Consensus 184 ~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 184 YKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 8899999999988887655 56666666677777788888888777666665
No 64
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=6e-08 Score=83.46 Aligned_cols=260 Identities=11% Similarity=0.005 Sum_probs=181.7
Q ss_pred HHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHH
Q 042593 67 DMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI 146 (352)
Q Consensus 67 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~ 146 (352)
.-+.+.|+++.|.++++-..+.|..+-++-.. --+.+.-+..-.++..|.+.-+...... .-+....+.--+..
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~----nl~~l~flqggk~~~~aqqyad~aln~d--ryn~~a~~nkgn~~ 500 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAAN----NLCALRFLQGGKDFADAQQYADIALNID--RYNAAALTNKGNIA 500 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhh----hhHHHHHHhcccchhHHHHHHHHHhccc--ccCHHHhhcCCcee
Confidence 35679999999999999888766655433321 1122222223447777777666652222 22333344444455
Q ss_pred HhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHH
Q 042593 147 WKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAV 225 (352)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~ 225 (352)
...|++++|...|++.....-.. ....||+ .-.+-..|++++|+++|-++... .-++...-.+...|-...+...|.
T Consensus 501 f~ngd~dka~~~ykeal~ndasc-~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASC-TEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHH-HHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 67899999999999998775443 4444543 33567889999999999887433 456777777888888889999999
Q ss_pred HHHHHHHhcCCCCCcchhh------------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCC
Q 042593 226 ENFERMQKVGLKPNRSWRI------------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPS 293 (352)
Q Consensus 226 ~~~~~m~~~~~~p~~~~~~------------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 293 (352)
+++.+... +.|+..... ..+|++.+-.--+ -++-+..+...|...|....-+++|...|++..-
T Consensus 579 e~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaal 654 (840)
T KOG2003|consen 579 ELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL 654 (840)
T ss_pred HHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 99877654 556655443 3333333322111 3445788989999999999999999999998764
Q ss_pred CCCCchhhHHHHHHH-HhcccccCcccccccchhhhhhHHHHhhhh
Q 042593 294 QITNVVVWRTGFLRL-LINSYFFSPITLNSQRLFFFPAALYALTQI 338 (352)
Q Consensus 294 ~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 338 (352)
..|+..-|..+|..| -+.|++++|+.++++.-..||-.+-++..+
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkfl 700 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFL 700 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHH
Confidence 489999999998875 578999999999999988888777665443
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.91 E-value=6.9e-07 Score=76.70 Aligned_cols=194 Identities=13% Similarity=-0.064 Sum_probs=132.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEP-SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 181 (352)
|..+...+.+.|+.++|...|++..+. .| +...|+.+...+...|++++|...++...+.... +..++..+..+
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~--~~~a~~~lg~~ 141 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALAL---RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT--YNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Confidence 777778899999999999999998442 34 4568999999999999999999999999887544 67888889999
Q ss_pred HHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCc-chhh-------hHhHHHHHH
Q 042593 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-SWRI-------GEEGLKFFD 253 (352)
Q Consensus 182 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~-------~~~a~~~~~ 253 (352)
+...|++++|.+.|+......|+-.........+...++.++|...+.+..... .|+. .+.. ...+ ..+.
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~~~~~~~lg~~~~~-~~~~ 219 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGWNIVEFYLGKISEE-TLME 219 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHHHHHHHHccCCCHH-HHHH
Confidence 999999999999999987666654322222223445678999999997755432 2221 1111 2112 2333
Q ss_pred HHHHhcCCCC-----ChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHH
Q 042593 254 KMVEECEVLP-----DIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRT 303 (352)
Q Consensus 254 ~m~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ 303 (352)
.+.+.....| ....|..+...+.+.|+.++|...|++.... +++-+-+..
T Consensus 220 ~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~ 275 (296)
T PRK11189 220 RLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRY 275 (296)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 3332111111 2346677777777777777777777776655 344444444
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.90 E-value=4.3e-07 Score=78.00 Aligned_cols=191 Identities=11% Similarity=-0.070 Sum_probs=131.4
Q ss_pred cccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCc-hhHHHHHHHH
Q 042593 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNL-VTWNVIITGL 100 (352)
Q Consensus 24 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~-~~~~~~i~~~ 100 (352)
...|......+.+.|+.++|...|+...+.. +.++..|+.+...+...|++++|...|+...+ |+. ..
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a-------- 134 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA-------- 134 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH--------
Confidence 3457777778888999999999999888865 45678899999999999999999999998865 432 33
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHH
Q 042593 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180 (352)
Q Consensus 101 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 180 (352)
|..+...+...|++++|.+.|++..+. .|+..............++.++|...++...... .+ +...+ . .
T Consensus 135 --~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~-~~~~~-~--~ 204 (296)
T PRK11189 135 --YLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DK-EQWGW-N--I 204 (296)
T ss_pred --HHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-Cc-cccHH-H--H
Confidence 777778888899999999999988442 3443322222223445678899998886654332 22 22111 2 2
Q ss_pred HHHhhCChHHHHHHHHHhcc---C-----CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 181 TYAKCGCIFSASKLFEDTSV---D-----RKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 181 ~~~~~g~~~~a~~~~~~~~~---~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
.....|+...+ +.+..+.. . +.....|..+...+.+.|++++|...|++..+.
T Consensus 205 ~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 205 VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 23335555443 24443332 1 123467888889999999999999999998874
No 67
>PF12854 PPR_1: PPR repeat
Probab=98.89 E-value=2.8e-09 Score=58.50 Aligned_cols=33 Identities=33% Similarity=0.491 Sum_probs=31.9
Q ss_pred CCCCChhhHHHHHHHHHHcCChhHHHHHHhcCC
Q 042593 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292 (352)
Q Consensus 260 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 292 (352)
|+.||..||+.||.+|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 899999999999999999999999999999985
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.85 E-value=1.1e-06 Score=69.30 Aligned_cols=204 Identities=12% Similarity=-0.012 Sum_probs=115.1
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhhHH
Q 042593 62 NTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS-EITIL 140 (352)
Q Consensus 62 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~t~~ 140 (352)
..-|.-.|...|+...|.+-+++..+.|+..+.+ |..+...|.+.|+.+.|.+-|++... +.|+ ....|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a-------~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLN 107 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLA-------HLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLN 107 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH-------HHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhh
Confidence 3445556666666666666666666544444444 66666666666666666666666533 2232 33555
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCC
Q 042593 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHG 219 (352)
Q Consensus 141 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~ 219 (352)
..-..+|..|++++|...|++....---+.-..+|..+.-+..+.|+.+.|.+.|++-....| ...+.-.+.....+.|
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAG 187 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcc
Confidence 555556666666666666666655433332345566666666666666666666665544433 3444555555566666
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCch
Q 042593 220 MGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVV 299 (352)
Q Consensus 220 ~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 299 (352)
++-.|...++..... ..++..+.-..|+.-...||.+.+.+.=..+....|...
T Consensus 188 ~y~~Ar~~~~~~~~~--------------------------~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 188 DYAPARLYLERYQQR--------------------------GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred cchHHHHHHHHHHhc--------------------------ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 666666666665553 225555555666666667776666555444433334443
Q ss_pred hh
Q 042593 300 VW 301 (352)
Q Consensus 300 ~~ 301 (352)
-+
T Consensus 242 e~ 243 (250)
T COG3063 242 EY 243 (250)
T ss_pred HH
Confidence 33
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.84 E-value=4.2e-07 Score=82.84 Aligned_cols=246 Identities=16% Similarity=0.140 Sum_probs=133.7
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHH
Q 042593 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDG 109 (352)
Q Consensus 30 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~ 109 (352)
-...+...|++++|++.++.-... +.-...........+.+.|+.++|..++..+.+.|+..+.- |..+..+
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Y-------y~~L~~~ 81 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDY-------YRGLEEA 81 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH-------HHHHHHH
Confidence 345667899999999999764433 34445667888899999999999999999998744433322 5555555
Q ss_pred HHhc-----CCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCCh-hhHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q 042593 110 YSRM-----NRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183 (352)
Q Consensus 110 ~~~~-----~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 183 (352)
..-. .+.+...++|+++ ...- |.......+.-.+.....+ ..+..++..+...|+++ +|+.+-..|.
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l-~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs----lF~~lk~Ly~ 154 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDEL-AEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS----LFSNLKPLYK 154 (517)
T ss_pred HhhhcccccccHHHHHHHHHHH-HHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch----HHHHHHHHHc
Confidence 5222 3577888888888 4332 3322222222112111111 22444455555555432 4555555555
Q ss_pred hhCChHHHHHHHHHhccC----------------CCCH--hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh-
Q 042593 184 KCGCIFSASKLFEDTSVD----------------RKNL--VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI- 244 (352)
Q Consensus 184 ~~g~~~~a~~~~~~~~~~----------------~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~- 244 (352)
...+.+-..+++...... .|.. .++.-+.+.|...|++++|.++.++.++. +|+..-+.
T Consensus 155 d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~ 232 (517)
T PF12569_consen 155 DPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYM 232 (517)
T ss_pred ChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHH
Confidence 555555555555443211 2333 23344455666677777777777766653 22211110
Q ss_pred -----------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 245 -----------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 245 -----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
..+|.+..+..... . .-|...-+..+..+.++|+.++|.+++....+.
T Consensus 233 ~KarilKh~G~~~~Aa~~~~~Ar~L-D-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 233 TKARILKHAGDLKEAAEAMDEAREL-D-LADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhC-C-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 33333333332221 1 124445555556666666666666666555443
No 70
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.84 E-value=3.2e-06 Score=73.47 Aligned_cols=286 Identities=10% Similarity=0.049 Sum_probs=186.9
Q ss_pred CCCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchh
Q 042593 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVT 92 (352)
Q Consensus 15 ~g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~ 92 (352)
....| +...|.+.++.=.+-..++.|..+|+..+-.. |++.+|-.....=-++|.+..|.++|+...+ .|...
T Consensus 168 ~~w~P---~eqaW~sfI~fElRykeieraR~IYerfV~~H--P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 168 MEWEP---DEQAWLSFIKFELRYKEIERARSIYERFVLVH--PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HcCCC---cHHHHHHHHHHHHHhhHHHHHHHHHHHHheec--ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 34678 99999999999999999999999999887643 8888888777777788888888888776543 11111
Q ss_pred HHHHHHHHH-----------------------------------------------------------------------
Q 042593 93 WNVIITGLV----------------------------------------------------------------------- 101 (352)
Q Consensus 93 ~~~~i~~~~----------------------------------------------------------------------- 101 (352)
-..+.-+++
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nY 322 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCc
Confidence 122222222
Q ss_pred -hHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh-------hHHHHHHHH---HhCCChhhHHHHHHHHHhcCCCCC
Q 042593 102 -KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI-------TILAVLPAI---WKNGEVRNCQLIHGYGEKRGFNAF 170 (352)
Q Consensus 102 -~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-------t~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~ 170 (352)
+|--.++.-...|+.+...++|++. ... ++|-.. .|.-+=-++ ....+.+.+.++++...+. .|.
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErA-Ian-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l--IPH 398 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERA-IAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL--IPH 398 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHH-Hcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--cCc
Confidence 4555555556667777777777776 322 333211 111111111 2456777777777777662 332
Q ss_pred chhhHHHH----HHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh--
Q 042593 171 DIHVSNCL----IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI-- 244 (352)
Q Consensus 171 ~~~~~~~l----i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-- 244 (352)
...||..+ ...-.++.++..|.+++.......|-..+|..-|..=.+.++++.+..++++.++-+.........
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kya 478 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYA 478 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHH
Confidence 44444433 333346677888888887776667777778777777778888888888888887754322211111
Q ss_pred --------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHHH
Q 042593 245 --------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLL 309 (352)
Q Consensus 245 --------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~ 309 (352)
.+.|..+|...+..+.+......|-+.|+.=...|.++.|..+++++....+...+|-++..--.
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~ 551 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEA 551 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhc
Confidence 77778888877776444445566777777777888888888888888766566667777665433
No 71
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=5.5e-08 Score=80.30 Aligned_cols=225 Identities=11% Similarity=0.038 Sum_probs=172.0
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhh-H
Q 042593 63 TALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT-I 139 (352)
Q Consensus 63 ~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t-~ 139 (352)
+-+.++|.+.|.+.+|++.|+.-.+ |-+.| |-.|-+.|.+..++..|+.+|.+-.. .-|-.+| .
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dT----------fllLskvY~ridQP~~AL~~~~~gld---~fP~~VT~l 293 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDT----------FLLLSKVYQRIDQPERALLVIGEGLD---SFPFDVTYL 293 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhH----------HHHHHHHHHHhccHHHHHHHHhhhhh---cCCchhhhh
Confidence 5677888888888888888887553 56666 77778888888888888888887733 2344444 4
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcC
Q 042593 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMH 218 (352)
Q Consensus 140 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~ 218 (352)
.-+.+.+-..++.+++.++|+...+.... ++....++...|--.++.+.|++.++++.+- ..+...|+.+--+|.-.
T Consensus 294 ~g~ARi~eam~~~~~a~~lYk~vlk~~~~--nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ya 371 (478)
T KOG1129|consen 294 LGQARIHEAMEQQEDALQLYKLVLKLHPI--NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYA 371 (478)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHhcCCc--cceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhh
Confidence 45666777788888888888888776543 6677777777888888888888888887655 46778888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCC
Q 042593 219 GMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITN 297 (352)
Q Consensus 219 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~ 297 (352)
++++-++.-|.+....--.|+ . -...|-.|.......||+..|.+.|+-.... ..+
T Consensus 372 qQ~D~~L~sf~RAlstat~~~---------------------~--aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 372 QQIDLVLPSFQRALSTATQPG---------------------Q--AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred cchhhhHHHHHHHHhhccCcc---------------------h--hhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 888888888888776432221 1 2346777777788899999999999988777 667
Q ss_pred chhhHHHHHHHHhcccccCcccccccch
Q 042593 298 VVVWRTGFLRLLINSYFFSPITLNSQRL 325 (352)
Q Consensus 298 ~~~~~~li~~~~~~g~~~~a~~~~~~~~ 325 (352)
...+|.|.---.+.|+.+.|..+..-+-
T Consensus 429 ~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 7899999888899999999887776553
No 72
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.83 E-value=6.1e-07 Score=76.19 Aligned_cols=215 Identities=14% Similarity=0.067 Sum_probs=126.2
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCC-CchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQ-SHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV 101 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~ 101 (352)
.......+...+....+-+.+..-++.....+.. .+..........+...|++++|+++++.- .+...
T Consensus 65 ~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~--------- 133 (290)
T PF04733_consen 65 ELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLEL--------- 133 (290)
T ss_dssp CCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHH---------
T ss_pred hHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccH---------
Confidence 5555544444443333333333333333222222 23333333334555678888888888765 34444
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHh----CCChhhHHHHHHHHHhcCCCCCchhhHHH
Q 042593 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK----NGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177 (352)
Q Consensus 102 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 177 (352)
....+..+.+.++++.|.+.++.| ++.. .| .+...+..++.. ...+.+|..+|+++.+. ..+ ++.+.+.
T Consensus 134 -~al~Vqi~L~~~R~dlA~k~l~~~-~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~-t~~~lng 206 (290)
T PF04733_consen 134 -LALAVQILLKMNRPDLAEKELKNM-QQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGS-TPKLLNG 206 (290)
T ss_dssp -HHHHHHHHHHTT-HHHHHHHHHHH-HCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S---SHHHHHH
T ss_pred -HHHHHHHHHHcCCHHHHHHHHHHH-HhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCC-CHHHHHH
Confidence 556677788888888888888888 5432 23 344444444432 34688888888887654 334 7778888
Q ss_pred HHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCH-HHHHHHHHHHHhcCCCCCcchhh-hHhHHHHHHH
Q 042593 178 LIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMG-KEAVENFERMQKVGLKPNRSWRI-GEEGLKFFDK 254 (352)
Q Consensus 178 li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~-~~~a~~~~~~ 254 (352)
+..++...|++++|.+++.+.... +.|..+...++.+....|+. +.+.+.+.+++.. .|+..... ..+....|++
T Consensus 207 ~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h~~~~~~~~~~~~FD~ 284 (290)
T PF04733_consen 207 LAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNHPLVKDLAEKEAEFDR 284 (290)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHH
Confidence 888888888888888888886555 34566777777777777776 6677777777763 34433333 4445555555
Q ss_pred HHH
Q 042593 255 MVE 257 (352)
Q Consensus 255 m~~ 257 (352)
...
T Consensus 285 ~~~ 287 (290)
T PF04733_consen 285 AVA 287 (290)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 73
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.77 E-value=6.9e-06 Score=74.19 Aligned_cols=274 Identities=12% Similarity=0.022 Sum_probs=197.6
Q ss_pred cHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHHHHhH
Q 042593 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGLVKW 103 (352)
Q Consensus 26 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~~~~~ 103 (352)
.|-...+..-..|++..|+.++....+.. +.+...|-+-+..-.....++.|..+|.+... ++... |
T Consensus 586 lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv----------~ 654 (913)
T KOG0495|consen 586 LWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERV----------W 654 (913)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchh----------h
Confidence 34444445556788888888888887765 44677788888888888888889888888764 55555 4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh-hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI-TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 104 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
.--++.---.++.++|.+++++..+. -|+-. .|..+...+-+.++++.|...|..-.+. -|..+..|-.|.+.=
T Consensus 655 mKs~~~er~ld~~eeA~rllEe~lk~---fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLakle 729 (913)
T KOG0495|consen 655 MKSANLERYLDNVEEALRLLEEALKS---FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLAKLE 729 (913)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHHh---CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHHHHH
Confidence 44444444567788888888877442 35543 6777777788888888888888765443 233678888888888
Q ss_pred HhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh---------hHhHHHHH
Q 042593 183 AKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI---------GEEGLKFF 252 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---------~~~a~~~~ 252 (352)
-+.|.+-+|..+++.-... +.|...|-..|..=.+.|+.+.|..++.+.++. -|++.... ...-....
T Consensus 730 Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~ 807 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSI 807 (913)
T ss_pred HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHH
Confidence 8999999999999987655 457888999999999999999999998887763 23333222 11111222
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCcccc
Q 042593 253 DKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITL 320 (352)
Q Consensus 253 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~ 320 (352)
+.++ +..-|......+...+....+++.|.+.|.+..+. +.+.-+|.-+...++.+|.-++-.++
T Consensus 808 DALk---kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev 873 (913)
T KOG0495|consen 808 DALK---KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEV 873 (913)
T ss_pred HHHH---hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHH
Confidence 2232 23446677778888899999999999999988877 66778899999999999965544333
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.76 E-value=2.6e-06 Score=77.71 Aligned_cols=250 Identities=9% Similarity=-0.007 Sum_probs=156.3
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcC-----ChhHHHHHhccCCC--C-------
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG-----FLKDSSKLFDELPE--R------- 88 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~--~------- 88 (352)
...........+.+.|+.++|..+|..+++.+ |.|..-|..|..+..-.. +.+...++|+++.+ |
T Consensus 37 k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~r 115 (517)
T PF12569_consen 37 KLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRR 115 (517)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhH
Confidence 34556677788889999999999999999988 444455666666653332 46677788887753 1
Q ss_pred ------CchhHHHHHHHHH----------hHHHHHHHHHhcCCHHHHHHHHHHhHhc---cC----------CCCChh--
Q 042593 89 ------NLVTWNVIITGLV----------KWTGIIDGYSRMNRSNEALALFRRMAAC---EY----------TEPSEI-- 137 (352)
Q Consensus 89 ------~~~~~~~~i~~~~----------~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~----------~~p~~~-- 137 (352)
+...+...+..++ .|+.|-..|....+.+-..+++...... .+ -.|+..
T Consensus 116 l~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw 195 (517)
T PF12569_consen 116 LPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLW 195 (517)
T ss_pred hhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHH
Confidence 1112222222222 4555555555555555555555554211 11 123332
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHH
Q 042593 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFA 216 (352)
Q Consensus 138 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~ 216 (352)
++..+...|-..|++++|..++++..++.+. .+..|..-.+.|-+.|++++|.+..+....- ..|-..-+..+..+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt--~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPT--LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 3445556666778888888888777776433 5667777777777888888887777776544 345566666677777
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhH--HHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 217 MHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHY--GCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 217 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
+.|++++|.+++....+.+..|.. .+.--+..| .-...+|.+.|++..|.+-|..+.+.
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~-------------------~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLS-------------------NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCccc-------------------CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 788888887777777665432110 000011122 34578899999999999999887764
No 75
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2.7e-06 Score=75.37 Aligned_cols=261 Identities=13% Similarity=0.009 Sum_probs=192.3
Q ss_pred CCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC
Q 042593 56 QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS 135 (352)
Q Consensus 56 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 135 (352)
.-++.....-.+-+-..+++.+..++++.+.+.|+..-+. +-.-|.++...|+..+-..+=.++.... +-.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~-------~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~ 311 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPC-------LPLHIACLYELGKSNKLFLLSHKLVDLY--PSK 311 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcch-------HHHHHHHHHHhcccchHHHHHHHHHHhC--CCC
Confidence 3455555556666777889999999999988755443222 5555667888888877777766773322 234
Q ss_pred hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC--C-HhhHHHHH
Q 042593 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK--N-LVSWTTII 212 (352)
Q Consensus 136 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~-~~~~~~li 212 (352)
..+|-++..-|--.|+.++|.+.+......... -...|-.....|+-.|..|.|...+....+--| . +..|. -
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~--fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYl--g 387 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT--FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYL--G 387 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc--ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHH--H
Confidence 568999988888889999999999877655433 577888999999999999999888876543322 1 12222 2
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh------------hHhHHHHHHHHHHhc-CCC----CChhhHHHHHHHH
Q 042593 213 SGFAMHGMGKEAVENFERMQKVGLKPNRSWRI------------GEEGLKFFDKMVEEC-EVL----PDIKHYGCLIDIL 275 (352)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------~~~a~~~~~~m~~~~-~~~----p~~~~~~~li~~~ 275 (352)
--|.+.++.+.|.+.|.+... +-|+..... +.+|..+|+..+..- .+. .-..+++.|..+|
T Consensus 388 mey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 347788999999999988765 556554433 888888888776320 111 1334688999999
Q ss_pred HHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCcccccccchhhhhhH
Q 042593 276 ERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAA 331 (352)
Q Consensus 276 ~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 331 (352)
.++++.++|...++..... +.+..++.++.-.|...|+++.|+..+..++..-|.+
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 9999999999999988777 7799999999999999999999999999987655544
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.70 E-value=1.6e-05 Score=70.33 Aligned_cols=287 Identities=7% Similarity=-0.075 Sum_probs=173.6
Q ss_pred cccHHHHHHHHHhcCCcchHHHHHHHHHHhCC-CCchh-hHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHH
Q 042593 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF-QSHVY-VNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITG 99 (352)
Q Consensus 24 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~ 99 (352)
...|..+...+...|+.+.+...+....+... .++.. ........+...|++++|.+.+++..+ |+.. ..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~--~a---- 79 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL--LA---- 79 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH--HH----
Confidence 44566666667777888887766666554331 22321 222234455678999999999988764 3322 11
Q ss_pred HHhHHHHHHHHH----hcCCHHHHHHHHHHhHhccCCCCCh-hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhh
Q 042593 100 LVKWTGIIDGYS----RMNRSNEALALFRRMAACEYTEPSE-ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHV 174 (352)
Q Consensus 100 ~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 174 (352)
++. ...+. ..+..+.+.+.+... .+..|+. .....+...+...|++++|...+++..+.... +...
T Consensus 80 ---~~~-~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~--~~~~ 150 (355)
T cd05804 80 ---LKL-HLGAFGLGDFSGMRDHVARVLPLW---APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD--DAWA 150 (355)
T ss_pred ---HHH-hHHHHHhcccccCchhHHHHHhcc---CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CcHH
Confidence 221 11222 234455555544432 1223333 34445666788899999999999999887644 6778
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHhccCC---CCH--hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCCcchh----h
Q 042593 175 SNCLIDTYAKCGCIFSASKLFEDTSVDR---KNL--VSWTTIISGFAMHGMGKEAVENFERMQKVGL-KPNRSWR----I 244 (352)
Q Consensus 175 ~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~----~ 244 (352)
+..+..++...|++++|...+++..... ++. ..|..+...+...|++++|..++++...... .+..... .
T Consensus 151 ~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (355)
T cd05804 151 VHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAAS 230 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHH
Confidence 8888999999999999999999876542 232 3455778889999999999999999864322 1111111 1
Q ss_pred ---------hHhHHHHHHHHHHhc--CCC--CChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CC---C-c---hhhHH
Q 042593 245 ---------GEEGLKFFDKMVEEC--EVL--PDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-IT---N-V---VVWRT 303 (352)
Q Consensus 245 ---------~~~a~~~~~~m~~~~--~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~---~-~---~~~~~ 303 (352)
......-++.+.... ... ...........++...|+.++|..+++.+... .. . . .+-..
T Consensus 231 ~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~ 310 (355)
T cd05804 231 LLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLP 310 (355)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHH
Confidence 011111222222110 111 11122235677788999999999999887554 11 1 1 12222
Q ss_pred HHH--HHHhcccccCcccccccch
Q 042593 304 GFL--RLLINSYFFSPITLNSQRL 325 (352)
Q Consensus 304 li~--~~~~~g~~~~a~~~~~~~~ 325 (352)
++. .+...|+.++|++.+.+.+
T Consensus 311 ~l~A~~~~~~g~~~~A~~~L~~al 334 (355)
T cd05804 311 LAEALYAFAEGNYATALELLGPVR 334 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333 4568999999999998876
No 77
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=6e-06 Score=71.85 Aligned_cols=270 Identities=12% Similarity=0.040 Sum_probs=142.7
Q ss_pred hcCCcchHHHHHHHHHHhCCCCch-hhHHHHHHHHHhcCChhHHHHHhccCC--CCCchhHHHHHHHHHhHHHHHHHHHh
Q 042593 36 TLSYPNLGTQLHAVFSKVGFQSHV-YVNTALGDMYVSLGFLKDSSKLFDELP--ERNLVTWNVIITGLVKWTGIIDGYSR 112 (352)
Q Consensus 36 ~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~--~~~~~~~~~~i~~~~~~~~li~~~~~ 112 (352)
+...+..|..+++..+..= |-+ ..|--.+..=-..|++..|.++|+.=. +|+... |++.|+-=.+
T Consensus 119 knk~vNhARNv~dRAvt~l--PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqa----------W~sfI~fElR 186 (677)
T KOG1915|consen 119 KNKQVNHARNVWDRAVTIL--PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQA----------WLSFIKFELR 186 (677)
T ss_pred hhhhHhHHHHHHHHHHHhc--chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHH----------HHHHHHHHHH
Confidence 4444444444444444321 211 222223333334466666666666532 367666 6667777777
Q ss_pred cCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhc-CCCCCchhhHHHHHHHHHhhCChHHH
Q 042593 113 MNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR-GFNAFDIHVSNCLIDTYAKCGCIFSA 191 (352)
Q Consensus 113 ~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a 191 (352)
-+.++.|..+|++..- +.|+..+|.-....=-+.|....+..+|+...+. |-...+...+.+....=.++..++.|
T Consensus 187 ykeieraR~IYerfV~---~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERa 263 (677)
T KOG1915|consen 187 YKEIERARSIYERFVL---VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERA 263 (677)
T ss_pred hhHHHHHHHHHHHHhe---ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777622 4577777777777777777777777777766543 11100122222222222223333333
Q ss_pred HHHHHHhcc---------------------------------------------CCCCHhhHHHHHHHHHcCCCHHHHHH
Q 042593 192 SKLFEDTSV---------------------------------------------DRKNLVSWTTIISGFAMHGMGKEAVE 226 (352)
Q Consensus 192 ~~~~~~~~~---------------------------------------------~~~~~~~~~~li~~~~~~~~~~~a~~ 226 (352)
.-+|.-..+ .+-|-.+|--.+..--..|+.+...+
T Consensus 264 r~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire 343 (677)
T KOG1915|consen 264 RFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRE 343 (677)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHH
Confidence 222221111 12244444445555555677777777
Q ss_pred HHHHHHhcCCCCC-cchhh----------------------------------------------------------hHh
Q 042593 227 NFERMQKVGLKPN-RSWRI----------------------------------------------------------GEE 247 (352)
Q Consensus 227 ~~~~m~~~~~~p~-~~~~~----------------------------------------------------------~~~ 247 (352)
+|++.... ++|- ..-+. +..
T Consensus 344 ~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ 422 (677)
T KOG1915|consen 344 TYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTG 422 (677)
T ss_pred HHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHH
Confidence 77776654 3332 11111 344
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCcccccccc
Q 042593 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQR 324 (352)
Q Consensus 248 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 324 (352)
|.+++...+ |..|...+|...|..=.+.++++.+.+++++.... +.|-.+|.-...-=...|+.+.|..++.-+
T Consensus 423 ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelA 497 (677)
T KOG1915|consen 423 ARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELA 497 (677)
T ss_pred HHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 444444433 45566666666666666666666666666666555 445556666555555666666665555444
No 78
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.61 E-value=6.1e-06 Score=80.30 Aligned_cols=234 Identities=9% Similarity=0.015 Sum_probs=158.4
Q ss_pred CCchhhHHHHHHHHHhcCChhHHHHHhccCCC-C----CchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhcc
Q 042593 56 QSHVYVNTALGDMYVSLGFLKDSSKLFDELPE-R----NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE 130 (352)
Q Consensus 56 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~----~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 130 (352)
|.+...|...|......+++++|++++++... - ...--|. |.++++.-..-|.-+...++|++. .+.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNi-------WiA~lNlEn~yG~eesl~kVFeRA-cqy 1526 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNI-------WIAYLNLENAYGTEESLKKVFERA-CQY 1526 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHH-------HHHHHhHHHhhCcHHHHHHHHHHH-HHh
Confidence 34455677777777788888888888887653 1 1112232 666666666667777888888888 322
Q ss_pred CCCCCh-hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC---CHh
Q 042593 131 YTEPSE-ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK---NLV 206 (352)
Q Consensus 131 ~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~ 206 (352)
-|. ..|..|...|.+.+..++|-++++.|.+.=- . ...+|...+..+.+.++-++|.+++.+..+.-| .+.
T Consensus 1527 ---cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q-~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1527 ---CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-Q-TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred ---cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-c-hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 233 3577888888888888888888888876532 2 677888888888888888888888877655433 344
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHH
Q 042593 207 SWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286 (352)
Q Consensus 207 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 286 (352)
.....+..-.+.|+.+++..+|+..+.. .+--...|+.+|+.=.++|+.+.+..
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~a--------------------------yPKRtDlW~VYid~eik~~~~~~vR~ 1655 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSA--------------------------YPKRTDLWSVYIDMEIKHGDIKYVRD 1655 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhh--------------------------CccchhHHHHHHHHHHccCCHHHHHH
Confidence 4555556667778888888888877763 23356689999999999999999999
Q ss_pred HHhcCCCC---CCCc-hhhHHHHHHHHhcccccCcccccccchhhhh
Q 042593 287 VASGIPSQ---ITNV-VVWRTGFLRLLINSYFFSPITLNSQRLFFFP 329 (352)
Q Consensus 287 ~~~~m~~~---~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 329 (352)
+|++.... +... ..|.-++..=-.+|+- ++++..+++-.++.
T Consensus 1656 lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde-~~vE~VKarA~EYv 1701 (1710)
T KOG1070|consen 1656 LFERVIELKLSIKKMKFFFKKWLEYEKSHGDE-KNVEYVKARAKEYV 1701 (1710)
T ss_pred HHHHHHhcCCChhHhHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHH
Confidence 99998776 2222 3445554444445554 44444444443443
No 79
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.60 E-value=1.7e-05 Score=76.19 Aligned_cols=250 Identities=12% Similarity=0.011 Sum_probs=169.7
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHh
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~ 102 (352)
+...+..|+..+-..+++++|.++.+...+.. +-....|-.+...+...++.+++.-+ .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~------------------ 88 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--N------------------ 88 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--h------------------
Confidence 45566677777777777777777777554433 22233333344455566665444433 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
++.......++.-+..+...| ... .-+...+..+..+|-+.|+.+++..+++++.+.... ++.+.|.+...|
T Consensus 89 ---~l~~~~~~~~~~~ve~~~~~i-~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~--n~~aLNn~AY~~ 160 (906)
T PRK14720 89 ---LIDSFSQNLKWAIVEHICDKI-LLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD--NPEIVKKLATSY 160 (906)
T ss_pred ---hhhhcccccchhHHHHHHHHH-Hhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc--cHHHHHHHHHHH
Confidence 122222333343333344444 222 133457778889999999999999999999998743 899999999999
Q ss_pred HhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCC
Q 042593 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVL 262 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~ 262 (352)
+.. ++++|.+.+.+. +..+...+++.++.++|.++.... |+. .+.-..+.+++...-+..
T Consensus 161 ae~-dL~KA~~m~~KA-------------V~~~i~~kq~~~~~e~W~k~~~~~--~~d----~d~f~~i~~ki~~~~~~~ 220 (906)
T PRK14720 161 EEE-DKEKAITYLKKA-------------IYRFIKKKQYVGIEEIWSKLVHYN--SDD----FDFFLRIERKVLGHREFT 220 (906)
T ss_pred HHh-hHHHHHHHHHHH-------------HHHHHhhhcchHHHHHHHHHHhcC--ccc----chHHHHHHHHHHhhhccc
Confidence 999 999999988876 444777889999999999998853 222 233455556666554555
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCcccccccc
Q 042593 263 PDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQR 324 (352)
Q Consensus 263 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 324 (352)
--..++.-+-..|-..++++++..+++.+.+. +.|.....-++..|. +.+.. ...+.+.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~ 280 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDY 280 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHH
Confidence 56677888889999999999999999999888 667788888888776 44443 4444444
No 80
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=9.4e-06 Score=70.93 Aligned_cols=213 Identities=12% Similarity=0.052 Sum_probs=100.2
Q ss_pred cCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC---CCchhHHHHHHHHHhHHHHHHHHHhc
Q 042593 37 LSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE---RNLVTWNVIITGLVKWTGIIDGYSRM 113 (352)
Q Consensus 37 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~i~~~~~~~~li~~~~~~ 113 (352)
.|+...|..-|+..+...-. +...|.-+..+|....+.++..+.|++... .|+.+ |..-...+.-.
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dv----------YyHRgQm~flL 407 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDV----------YYHRGQMRFLL 407 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCch----------hHhHHHHHHHH
Confidence 34444555555555444311 111144444445555555555555554433 12222 33333334444
Q ss_pred CCHHHHHHHHHHhHhccCCCC-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHH
Q 042593 114 NRSNEALALFRRMAACEYTEP-SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSAS 192 (352)
Q Consensus 114 ~~~~~a~~~~~~m~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 192 (352)
+++++|..=|++. .. +.| +...|..+..+.-+.+.+++++..|++.++.=+. -+.+|+.....+...++++.|.
T Consensus 408 ~q~e~A~aDF~Ka-i~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~--~~Evy~~fAeiLtDqqqFd~A~ 482 (606)
T KOG0547|consen 408 QQYEEAIADFQKA-IS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN--CPEVYNLFAEILTDQQQFDKAV 482 (606)
T ss_pred HHHHHHHHHHHHH-hh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CchHHHHHHHHHhhHHhHHHHH
Confidence 4455555555544 11 112 2233444444444455555555555554443211 4445555555555555555555
Q ss_pred HHHHHhccCCCC-------Hh--hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCC
Q 042593 193 KLFEDTSVDRKN-------LV--SWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLP 263 (352)
Q Consensus 193 ~~~~~~~~~~~~-------~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p 263 (352)
+.|+....-.|+ .. .--.++..- =.+++. +|..++.+..+ +.|
T Consensus 483 k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~------------------------~a~~Ll~KA~e---~Dp 534 (606)
T KOG0547|consen 483 KQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDIN------------------------QAENLLRKAIE---LDP 534 (606)
T ss_pred HHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHH------------------------HHHHHHHHHHc---cCc
Confidence 555543332221 00 001111111 113444 44444444432 223
Q ss_pred -ChhhHHHHHHHHHHcCChhHHHHHHhcCCC
Q 042593 264 -DIKHYGCLIDILERAGRLEQAEEVASGIPS 293 (352)
Q Consensus 264 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 293 (352)
....|..|...-...|++++|.++|++-..
T Consensus 535 kce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 535 KCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345788899999999999999999987653
No 81
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.56 E-value=2e-05 Score=69.73 Aligned_cols=65 Identities=18% Similarity=0.077 Sum_probs=56.9
Q ss_pred CCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCC
Q 042593 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP 86 (352)
Q Consensus 20 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 86 (352)
.|.|..+|+.||+-+... ..+++.+.++++... ++.++..|..-|..-.+..+++..+++|.+..
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCL 80 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCL 80 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 456999999999988877 999999999999875 36677889999999999999999999999865
No 82
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.56 E-value=5.9e-06 Score=68.58 Aligned_cols=182 Identities=11% Similarity=-0.017 Sum_probs=122.9
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCch---hhHHHHHHHHHhcCChhHHHHHhccCCC--CCchh-HHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHV---YVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVT-WNVI 96 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~-~~~~ 96 (352)
....+-.....+...|+++.|...++.+.... +.++ .++..+..++...|++++|...++++.+ |+... ...
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a- 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA- 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH-
Confidence 56677778888899999999999999988754 2222 4677788999999999999999999865 32221 001
Q ss_pred HHHHHhHHHHHHHHHhc--------CCHHHHHHHHHHhHhccCCCCChh-hHHHHHHHHHhCCChhhHHHHHHHHHhcCC
Q 042593 97 ITGLVKWTGIIDGYSRM--------NRSNEALALFRRMAACEYTEPSEI-TILAVLPAIWKNGEVRNCQLIHGYGEKRGF 167 (352)
Q Consensus 97 i~~~~~~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 167 (352)
+..+..++... |+.++|.+.|+++... .|+.. ....+... .. ... .
T Consensus 110 ------~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~-~~---~~~------~------ 164 (235)
T TIGR03302 110 ------YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM-DY---LRN------R------ 164 (235)
T ss_pred ------HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH-HH---HHH------H------
Confidence 33333444433 7788999999998432 24432 22111111 00 000 0
Q ss_pred CCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCC----HhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 168 NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN----LVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 168 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
.......+...|.+.|++++|...++......|+ ...+..+..++...|++++|...++.+...
T Consensus 165 ---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 165 ---LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred ---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0111225566788999999999999887665443 467888889999999999999988887764
No 83
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.55 E-value=1.2e-05 Score=66.78 Aligned_cols=176 Identities=10% Similarity=-0.038 Sum_probs=99.1
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHhccCCC--CCc-hhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC
Q 042593 58 HVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNL-VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134 (352)
Q Consensus 58 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~-~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p 134 (352)
....+-.+...+...|++++|...|+++.+ |+. ....+ +..+..++.+.|++++|...++++.+...-.|
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a-------~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~ 104 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQA-------QLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP 104 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHH-------HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 345566666777777888888888877654 322 11111 56667777778888888888888744332222
Q ss_pred Ch-hhHHHHHHHHHhC--------CChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCH
Q 042593 135 SE-ITILAVLPAIWKN--------GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205 (352)
Q Consensus 135 ~~-~t~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 205 (352)
.. .++..+..++... |+.++|...++.+.+.... +...+..+..... ..... .
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~a~~~~~~----~~~~~------------~ 166 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN--SEYAPDAKKRMDY----LRNRL------------A 166 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC--ChhHHHHHHHHHH----HHHHH------------H
Confidence 21 1344444444433 5566677777766655333 2222222211100 00000 0
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCCc--chhh----------hHhHHHHHHHHHHh
Q 042593 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGL-KPNR--SWRI----------GEEGLKFFDKMVEE 258 (352)
Q Consensus 206 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~--~~~~----------~~~a~~~~~~m~~~ 258 (352)
.....+...+.+.|++++|...+++..+... .|.. ..+. .++|..+++.+..+
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112455678899999999999999887532 1211 1111 78888888887765
No 84
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.49 E-value=0.00023 Score=63.02 Aligned_cols=250 Identities=10% Similarity=-0.033 Sum_probs=151.0
Q ss_pred HHHHhcCCcchHHHHHHHHHHhCCCCchhhHHH---HHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHH
Q 042593 32 RTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTA---LGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIID 108 (352)
Q Consensus 32 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~ 108 (352)
..+...|++++|.++++...+.. +.+...+.. +.......+..+.+.+.++.....+...+.. ...+..
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~~a~ 122 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYL-------LGMLAF 122 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHH-------HHHHHH
Confidence 34557899999999999988764 445545442 2222223456666777666533222222111 445556
Q ss_pred HHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCc--hhhHHHHHHHHHhhC
Q 042593 109 GYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD--IHVSNCLIDTYAKCG 186 (352)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g 186 (352)
.+...|++++|...+++..... +.+...+..+..++...|++++|...++........+++ ...|..+...+...|
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~--p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G 200 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELN--PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG 200 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence 7889999999999999994422 234557788888999999999999999988876432212 245567888999999
Q ss_pred ChHHHHHHHHHhccCCC---CHhhH-H--HHHHHHHcCCCHHHHHHHHHHHHhcC-CC-CCc-chhh-------------
Q 042593 187 CIFSASKLFEDTSVDRK---NLVSW-T--TIISGFAMHGMGKEAVENFERMQKVG-LK-PNR-SWRI------------- 244 (352)
Q Consensus 187 ~~~~a~~~~~~~~~~~~---~~~~~-~--~li~~~~~~~~~~~a~~~~~~m~~~~-~~-p~~-~~~~------------- 244 (352)
+.++|.+++++.....| ..... + .++.-+...|....+.+. +.+.... .. |+. ..+.
T Consensus 201 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 279 (355)
T cd05804 201 DYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGD 279 (355)
T ss_pred CHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCC
Confidence 99999999999754433 12111 2 223333444433333222 2221110 00 111 0111
Q ss_pred hHhHHHHHHHHHHhcCCCC--------ChhhHHHHHHHHHHcCChhHHHHHHhcCCC
Q 042593 245 GEEGLKFFDKMVEECEVLP--------DIKHYGCLIDILERAGRLEQAEEVASGIPS 293 (352)
Q Consensus 245 ~~~a~~~~~~m~~~~~~~p--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 293 (352)
.+.+...++.+... ...+ ....--...-++...|+.++|.+.+.....
T Consensus 280 ~~~a~~~L~~l~~~-~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 280 KDALDKLLAALKGR-ASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHHHHH-HhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77788888887664 2110 112222333445689999999998876543
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=7.5e-05 Score=61.48 Aligned_cols=264 Identities=12% Similarity=0.080 Sum_probs=176.5
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGL 100 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~~ 100 (352)
...-+.+++..+.+..+++.|.+++..-.+.. +.+....+.|..+|-...++..|...++++-+ |...-|..
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl----- 82 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL----- 82 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH-----
Confidence 34457888888899999999999998877765 44777888999999999999999999999875 54444322
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHH--HhCCChhhHHHHHHHHHhcCCCCCchhhHHHH
Q 042593 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI--WKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178 (352)
Q Consensus 101 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 178 (352)
|. ...+-+++.+..|+++...| .+. |+...-..-+.+. -..+++..+..++++.-..| +..+.+..
T Consensus 83 --Y~--AQSLY~A~i~ADALrV~~~~-~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en----~Ad~~in~ 150 (459)
T KOG4340|consen 83 --YQ--AQSLYKACIYADALRVAFLL-LDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN----EADGQINL 150 (459)
T ss_pred --HH--HHHHHHhcccHHHHHHHHHh-cCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC----ccchhccc
Confidence 21 24566788899999999998 432 3332222223333 35688889998888765433 44455555
Q ss_pred HHHHHhhCChHHHHHHHHHhccC-C-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh--hHh---HHHH
Q 042593 179 IDTYAKCGCIFSASKLFEDTSVD-R-KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI--GEE---GLKF 251 (352)
Q Consensus 179 i~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~~~---a~~~ 251 (352)
....-+.|+++.|.+-|+...+. . .....||..+. ..+.|+++.|.+...+++++|++....... .-+ +..+
T Consensus 151 gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsv 229 (459)
T KOG4340|consen 151 GCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSV 229 (459)
T ss_pred hheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcc
Confidence 56667999999999999987655 2 34456776554 556789999999999999998764433222 000 0000
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC---CCCchhhHHHHHH
Q 042593 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ---ITNVVVWRTGFLR 307 (352)
Q Consensus 252 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~li~~ 307 (352)
=+... . ...--...+|.-...+.+.|+.+.|.+.+-+|..+ ..|++|...+...
T Consensus 230 gNt~~-l-h~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~ 286 (459)
T KOG4340|consen 230 GNTLV-L-HQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM 286 (459)
T ss_pred cchHH-H-HHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh
Confidence 00000 0 00001223454555667899999999999999877 5667766665443
No 86
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.48 E-value=4.3e-05 Score=74.72 Aligned_cols=205 Identities=16% Similarity=0.101 Sum_probs=167.9
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHh-CCCC---chhhHHHHHHHHHhcCChhHHHHHhccCCC-CCchhHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKV-GFQS---HVYVNTALGDMYVSLGFLKDSSKLFDELPE-RNLVTWNVII 97 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~i 97 (352)
++..|-.-|....+.++.+.|+++.+..... ++.- -...|.++++.-...|.-+...++|++..+ -|+.+
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~----- 1531 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYT----- 1531 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHH-----
Confidence 5667888888999999999999999988753 2221 234688888888888988899999999865 33322
Q ss_pred HHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHH
Q 042593 98 TGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177 (352)
Q Consensus 98 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 177 (352)
.|..|...|.+....++|.++++.|.++.+ -....|...+..+.+..+-+.|..++.+..+.-...........
T Consensus 1532 ----V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Isk 1605 (1710)
T KOG1070|consen 1532 ----VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISK 1605 (1710)
T ss_pred ----HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHH
Confidence 289999999999999999999999977666 45568999999999999999999999998876444224555566
Q ss_pred HHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Q 042593 178 LIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238 (352)
Q Consensus 178 li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 238 (352)
.+..--+.|+.+++..+|+......| -...|+..|+.=.++|+.+.+..+|++....++.|
T Consensus 1606 fAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 66677789999999999999876654 67899999999999999999999999999987765
No 87
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.46 E-value=3.4e-07 Score=50.83 Aligned_cols=35 Identities=34% Similarity=0.632 Sum_probs=32.2
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCc
Q 042593 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240 (352)
Q Consensus 206 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 240 (352)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999998873
No 88
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=0.00024 Score=59.98 Aligned_cols=78 Identities=14% Similarity=0.067 Sum_probs=54.4
Q ss_pred hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHH-HHHHHhcccccCcccccc
Q 042593 245 GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTG-FLRLLINSYFFSPITLNS 322 (352)
Q Consensus 245 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~l-i~~~~~~g~~~~a~~~~~ 322 (352)
+++++.++..+..- -..-|...+ .+..+++..|+..+|+++|-.+... ..|..+|.++ ..+|.+.+.++.|+.++-
T Consensus 375 FddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l 452 (557)
T KOG3785|consen 375 FDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML 452 (557)
T ss_pred HHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 44444444444432 222333333 4788999999999999999888766 4577788775 557899999999998876
Q ss_pred cc
Q 042593 323 QR 324 (352)
Q Consensus 323 ~~ 324 (352)
.+
T Consensus 453 k~ 454 (557)
T KOG3785|consen 453 KT 454 (557)
T ss_pred hc
Confidence 55
No 89
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.45 E-value=7.9e-05 Score=60.25 Aligned_cols=160 Identities=12% Similarity=0.001 Sum_probs=130.3
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHhccCCC---CCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC
Q 042593 58 HVYVNTALGDMYVSLGFLKDSSKLFDELPE---RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134 (352)
Q Consensus 58 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p 134 (352)
|... ..+-..+.-.|+-+....+...... .|... .+..++...+.|++..|...+.+. ... -++
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~l----------l~~~gk~~~~~g~~~~A~~~~rkA-~~l-~p~ 132 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDREL----------LAAQGKNQIRNGNFGEAVSVLRKA-ARL-APT 132 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHH----------HHHHHHHHHHhcchHHHHHHHHHH-hcc-CCC
Confidence 3444 5566777778888888877777543 23333 556888899999999999999999 433 357
Q ss_pred ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHH
Q 042593 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIIS 213 (352)
Q Consensus 135 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~ 213 (352)
|..+|+.+.-+|-+.|+.++|..-|.+..+.... ++...|.+.-.|.-.|+.+.|..++.......+ |...-..+..
T Consensus 133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~--~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl 210 (257)
T COG5010 133 DWEAWNLLGAALDQLGRFDEARRAYRQALELAPN--EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL 210 (257)
T ss_pred ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC--CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 8889999999999999999999999999887655 788899999999999999999999998766644 8888899999
Q ss_pred HHHcCCCHHHHHHHHHHHH
Q 042593 214 GFAMHGMGKEAVENFERMQ 232 (352)
Q Consensus 214 ~~~~~~~~~~a~~~~~~m~ 232 (352)
.....|++++|.++...-.
T Consensus 211 ~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 211 VVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHhhcCChHHHHhhccccc
Confidence 9999999999998876543
No 90
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=2.6e-05 Score=71.45 Aligned_cols=207 Identities=12% Similarity=0.038 Sum_probs=123.6
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGL 100 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~~ 100 (352)
--..=..+...+...|-..+|..+++.. +.|.-+|.+|+..|+-++|..+..+-.+ ||+..
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~l-------- 459 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRL-------- 459 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchh--------
Confidence 3334455566677778888888887754 3455577888888888888777665443 55565
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHH
Q 042593 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180 (352)
Q Consensus 101 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 180 (352)
|..+.+......-+++|.++.+..... .-..+..-..+.++++++.+.++.-.+.+.- ...+|-.+-.
T Consensus 460 --yc~LGDv~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl--q~~~wf~~G~ 527 (777)
T KOG1128|consen 460 --YCLLGDVLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPL--QLGTWFGLGC 527 (777)
T ss_pred --HHHhhhhccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCcc--chhHHHhccH
Confidence 555555555555566666666655111 0011111122356667777666665554432 4566666666
Q ss_pred HHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh----------hHhHH
Q 042593 181 TYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI----------GEEGL 249 (352)
Q Consensus 181 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----------~~~a~ 249 (352)
+..+.++++.|.+.|.....-.| +...||++-.+|.+.|+-.+|...+++..+.+-.+-...-+ +++|+
T Consensus 528 ~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 528 AALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH
Confidence 66677777777777776655544 35667777777777777777777777766654333322222 55555
Q ss_pred HHHHHHHHh
Q 042593 250 KFFDKMVEE 258 (352)
Q Consensus 250 ~~~~~m~~~ 258 (352)
+.+.++...
T Consensus 608 ~A~~rll~~ 616 (777)
T KOG1128|consen 608 KAYHRLLDL 616 (777)
T ss_pred HHHHHHHHh
Confidence 555555543
No 91
>PLN02789 farnesyltranstransferase
Probab=98.43 E-value=0.00012 Score=63.10 Aligned_cols=195 Identities=11% Similarity=0.024 Sum_probs=135.4
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcC-ChhHHHHHhccCCCCCchhHHHHHHHHHhHHH
Q 042593 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG-FLKDSSKLFDELPERNLVTWNVIITGLVKWTG 105 (352)
Q Consensus 27 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~ 105 (352)
+..+-..+...++.++|+.+.+.+++.. +-+..+|+..-.++...| ++++++..++++.+.++..+.+ |+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa-------W~~ 111 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI-------WHH 111 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH-------hHH
Confidence 4445555666788999999999998765 334456766666666777 5799999999887655544444 665
Q ss_pred HHHHHHhcCC--HHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q 042593 106 IIDGYSRMNR--SNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183 (352)
Q Consensus 106 li~~~~~~~~--~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 183 (352)
.-..+.+.|+ .++++.+++++.... +-|..+|+...-++.+.|+++++.+.++++.+.++. +...|+....++.
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~d--pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~--N~sAW~~R~~vl~ 187 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLD--AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR--NNSAWNQRYFVIT 187 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC--chhHHHHHHHHHH
Confidence 5444555555 367888888884322 235668888888888999999999999999998766 7788887776666
Q ss_pred hh---CCh----HHHHHHHHHhccC-CCCHhhHHHHHHHHHcC----CCHHHHHHHHHHHHh
Q 042593 184 KC---GCI----FSASKLFEDTSVD-RKNLVSWTTIISGFAMH----GMGKEAVENFERMQK 233 (352)
Q Consensus 184 ~~---g~~----~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~ 233 (352)
+. |+. +++.+...+.... +-|...|+-+...+... ++..+|.+.+.+..+
T Consensus 188 ~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 188 RSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred hccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 55 222 4566666554444 45778888877777763 334567777766554
No 92
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.42 E-value=4.5e-07 Score=50.00 Aligned_cols=33 Identities=24% Similarity=0.508 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Q 042593 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238 (352)
Q Consensus 206 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 238 (352)
.+|++++.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 689999999999999999999999999998887
No 93
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.41 E-value=0.00013 Score=58.53 Aligned_cols=163 Identities=10% Similarity=-0.055 Sum_probs=120.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
--.-+..|...|+++.+..-.+.+ .. |. . .+...++.+++...++...+.+.. +...|..+...|
T Consensus 19 ~~~~~~~Y~~~g~~~~v~~~~~~~-~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~P~--~~~~w~~Lg~~~ 83 (198)
T PRK10370 19 VFLCVGSYLLSPKWQAVRAEYQRL-AD----PL-H-------QFASQQTPEAQLQALQDKIRANPQ--NSEQWALLGEYY 83 (198)
T ss_pred HHHHHHHHHHcchHHHHHHHHHHH-hC----cc-c-------cccCchhHHHHHHHHHHHHHHCCC--CHHHHHHHHHHH
Confidence 344456788899988875554333 11 11 0 122356677777777777776544 889999999999
Q ss_pred HhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHH-HcCCC--HHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHh
Q 042593 183 AKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGF-AMHGM--GKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEE 258 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~-~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~ 258 (352)
...|++++|...|+......| +...+..+..++ ...|+ .++|..++++..+..
T Consensus 84 ~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d----------------------- 140 (198)
T PRK10370 84 LWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD----------------------- 140 (198)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-----------------------
Confidence 999999999999999876655 678888888764 67777 599999999988742
Q ss_pred cCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHH
Q 042593 259 CEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLR 307 (352)
Q Consensus 259 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~ 307 (352)
+-+...+..+...+.+.|++++|...++++... +|+..-+. +|.+
T Consensus 141 ---P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~-~i~~ 186 (198)
T PRK10370 141 ---ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQ-LVES 186 (198)
T ss_pred ---CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH-HHHH
Confidence 226678888999999999999999999999877 66665443 3344
No 94
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=9.3e-05 Score=63.62 Aligned_cols=204 Identities=14% Similarity=0.033 Sum_probs=145.7
Q ss_pred CCChhhHHHHHHHHH--hCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhh-HH
Q 042593 133 EPSEITILAVLPAIW--KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS-WT 209 (352)
Q Consensus 133 ~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~ 209 (352)
.|+..+....+.+++ ..++...+...+-.+.....-+.+.+....+..++...|+.+.|...|+......|+..+ ..
T Consensus 191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD 270 (564)
T KOG1174|consen 191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD 270 (564)
T ss_pred CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence 344445555666554 455556666666555555545548999999999999999999999999998666664322 22
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh----------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcC
Q 042593 210 TIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI----------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279 (352)
Q Consensus 210 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 279 (352)
.-.-.+.+.|+.+....+...+....-..-..++. ...|+.+-++-++. -+-+...|-.-...+...|
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~~~ 348 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIALE 348 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHhcc
Confidence 22233567888888888888876643222222332 66777777776643 1123444544466788999
Q ss_pred ChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCcccccccchhhhhhHHHHhhhh
Q 042593 280 RLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAALYALTQI 338 (352)
Q Consensus 280 ~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 338 (352)
+.++|.-.|+..+.. +-+...|.-|+.+|+..|.+++|.-...+.+..+|.+...+.-+
T Consensus 349 R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~ 408 (564)
T KOG1174|consen 349 RHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLF 408 (564)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 999999999999887 67889999999999999999999999999999998886665443
No 95
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.39 E-value=0.0002 Score=65.01 Aligned_cols=296 Identities=12% Similarity=0.066 Sum_probs=167.4
Q ss_pred cHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CC-chh------HHHH
Q 042593 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RN-LVT------WNVI 96 (352)
Q Consensus 26 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~-~~~------~~~~ 96 (352)
|.....-.+...|+-++|.+......+.. ..+...|..+.-.+-...++++|++.|..... || ... -.+-
T Consensus 43 slAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q 121 (700)
T KOG1156|consen 43 SLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ 121 (700)
T ss_pred hHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 33333334455566666666555554433 23445555555555555666666666665432 11 111 1111
Q ss_pred HHHHH------------------hHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHH------HHHHhCCCh
Q 042593 97 ITGLV------------------KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVL------PAIWKNGEV 152 (352)
Q Consensus 97 i~~~~------------------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll------~~~~~~~~~ 152 (352)
++-+. .|..+.-++.-.|+...|..+.++..+...-.|+...|.... ....+.|..
T Consensus 122 mRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~ 201 (700)
T KOG1156|consen 122 MRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSL 201 (700)
T ss_pred HHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccH
Confidence 11111 477888888888999999999999855554456665554332 234566777
Q ss_pred hhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHH-cCCCHHHHH-HHHHH
Q 042593 153 RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFA-MHGMGKEAV-ENFER 230 (352)
Q Consensus 153 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~-~~~~~ 230 (352)
+.|.+.+..-...-+. ....-..-...+.+.+++++|..++..+....||-.-|+.....+. +-.+.-++. .+|..
T Consensus 202 q~ale~L~~~e~~i~D--kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ 279 (700)
T KOG1156|consen 202 QKALEHLLDNEKQIVD--KLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAI 279 (700)
T ss_pred HHHHHHHHhhhhHHHH--HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 7777766654443221 2333345567788999999999999998877887766665554333 232222332 44444
Q ss_pred HHh----------------------------------cCCCCCcch---hh--hHhHHHHHHHHHHhc--CC--------
Q 042593 231 MQK----------------------------------VGLKPNRSW---RI--GEEGLKFFDKMVEEC--EV-------- 261 (352)
Q Consensus 231 m~~----------------------------------~~~~p~~~~---~~--~~~a~~~~~~m~~~~--~~-------- 261 (352)
..+ .|+.+--.. +. .. -..+++++...+ ++
T Consensus 280 ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~-k~~~le~Lvt~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 280 LSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPE-KVAFLEKLVTSYQHSLSGTGMFNF 358 (700)
T ss_pred HhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchh-HhHHHHHHHHHHHhhcccccCCCc
Confidence 332 222211111 11 11 111222222110 11
Q ss_pred -------CCChhhH--HHHHHHHHHcCChhHHHHHHhcCCCCCCCc-hhhHHHHHHHHhcccccCcccccccch
Q 042593 262 -------LPDIKHY--GCLIDILERAGRLEQAEEVASGIPSQITNV-VVWRTGFLRLLINSYFFSPITLNSQRL 325 (352)
Q Consensus 262 -------~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~ 325 (352)
+|+...| -.++..+-+.|+++.|+..++....+.|+. ..|-.-.+-+...|+.++|...+.+..
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~ 432 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ 432 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 3444433 467888889999999999999988873333 344444566788889998888877763
No 96
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.36 E-value=1.8e-05 Score=72.42 Aligned_cols=250 Identities=14% Similarity=0.133 Sum_probs=168.2
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHh---------------------CCCCchhhHHHHHHHHHhcCChhHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKV---------------------GFQSHVYVNTALGDMYVSLGFLKDSSKL 81 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~---------------------~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (352)
.......+++...+.++.....+-+.+|... +++|--..-..+...+.+.|-...|..+
T Consensus 341 ~i~~salllr~~~E~~~~RtveR~~~q~q~lv~~iq~~e~~v~nRlsy~ya~~lpp~Wq~q~~laell~slGitksAl~I 420 (777)
T KOG1128|consen 341 SIQASALLLRFLLESTRSRTVERALSQMQFLVKAIQMKEYSVLNRLSYIYAPHLPPIWQLQRLLAELLLSLGITKSALVI 420 (777)
T ss_pred eeehHHHHHHHHHHhcCccchhhHHHHHHHHHHHHhhccHhHHhcccccccCCCCCcchHHHHHHHHHHHcchHHHHHHH
Confidence 3455666777777777766665555554321 1233333445677788889999999999
Q ss_pred hccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHH
Q 042593 82 FDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY 161 (352)
Q Consensus 82 ~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 161 (352)
|+++. . |.-+|.+|+..|+..+|..+..+- -+ .+||...|..+........-+++|.++.+.
T Consensus 421 ~Erle-----m----------w~~vi~CY~~lg~~~kaeei~~q~-le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~ 482 (777)
T KOG1128|consen 421 FERLE-----M----------WDPVILCYLLLGQHGKAEEINRQE-LE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNY 482 (777)
T ss_pred HHhHH-----H----------HHHHHHHHHHhcccchHHHHHHHH-hc--CCCcchhHHHhhhhccChHHHHHHHHHhhh
Confidence 99863 3 888888999999999998887776 32 468888888888777777777777777765
Q ss_pred HHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCc
Q 042593 162 GEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240 (352)
Q Consensus 162 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 240 (352)
.... .-..+.....+.++++++.+.|+.-... +--..+|-..-.+..+.++++.|.+.|..-.. ..||
T Consensus 483 ~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd- 551 (777)
T KOG1128|consen 483 ISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPD- 551 (777)
T ss_pred hhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCC-
Confidence 4322 1222222333478999999999864433 44678888888888899999999999998776 2343
Q ss_pred chhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCccc
Q 042593 241 SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPIT 319 (352)
Q Consensus 241 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~ 319 (352)
+...||.+-.+|.+.|+-.+|...+.+..+- ..+...|...+......|.+++|++
T Consensus 552 -----------------------~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 552 -----------------------NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred -----------------------chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHH
Confidence 3456666666666666666666666655444 4455556555555666666666666
Q ss_pred ccccc
Q 042593 320 LNSQR 324 (352)
Q Consensus 320 ~~~~~ 324 (352)
...+.
T Consensus 609 A~~rl 613 (777)
T KOG1128|consen 609 AYHRL 613 (777)
T ss_pred HHHHH
Confidence 55554
No 97
>PLN02789 farnesyltranstransferase
Probab=98.36 E-value=0.00018 Score=62.12 Aligned_cols=213 Identities=9% Similarity=-0.072 Sum_probs=142.4
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcC-CHHHHHHHHHHhHhccCCCCChhhHH
Q 042593 62 NTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMN-RSNEALALFRRMAACEYTEPSEITIL 140 (352)
Q Consensus 62 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~p~~~t~~ 140 (352)
++.+-..+...++.++|+.+.+++.+.++..+++ |+..-..+...| ++++++..++++.+ .. +-+..+|+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~lnP~~yta-------W~~R~~iL~~L~~~l~eeL~~~~~~i~-~n-pknyqaW~ 110 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLNPGNYTV-------WHFRRLCLEALDADLEEELDFAEDVAE-DN-PKNYQIWH 110 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHH-------HHHHHHHHHHcchhHHHHHHHHHHHHH-HC-CcchHHhH
Confidence 3344445556678889999999888766655555 776666666677 68999999999844 22 12333566
Q ss_pred HHHHHHHhCCCh--hhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHc
Q 042593 141 AVLPAIWKNGEV--RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAM 217 (352)
Q Consensus 141 ~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~ 217 (352)
.-...+.+.|+. +++..+++.+.+.... +.++|+....++.+.|+++++++.++++.+. ..|...|+.....+.+
T Consensus 111 ~R~~~l~~l~~~~~~~el~~~~kal~~dpk--Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~ 188 (320)
T PLN02789 111 HRRWLAEKLGPDAANKELEFTRKILSLDAK--NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITR 188 (320)
T ss_pred HHHHHHHHcCchhhHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHh
Confidence 555555566653 6678888888877654 8999999999999999999999999998766 4567777776655544
Q ss_pred CC---CH----HHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc----CChhHHHH
Q 042593 218 HG---MG----KEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERA----GRLEQAEE 286 (352)
Q Consensus 218 ~~---~~----~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~ 286 (352)
.+ .. ++..+...+++.. .+-|...|+-+...+... ++..+|.+
T Consensus 189 ~~~l~~~~~~~e~el~y~~~aI~~--------------------------~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~ 242 (320)
T PLN02789 189 SPLLGGLEAMRDSELKYTIDAILA--------------------------NPRNESPWRYLRGLFKDDKEALVSDPEVSS 242 (320)
T ss_pred ccccccccccHHHHHHHHHHHHHh--------------------------CCCCcCHHHHHHHHHhcCCcccccchhHHH
Confidence 32 11 2334444343331 123667777777777663 34456777
Q ss_pred HHhcCCCC-CCCchhhHHHHHHHHhc
Q 042593 287 VASGIPSQ-ITNVVVWRTGFLRLLIN 311 (352)
Q Consensus 287 ~~~~m~~~-~~~~~~~~~li~~~~~~ 311 (352)
.+.+.... +.+......|+..|...
T Consensus 243 ~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 243 VCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 77776554 45666777788877753
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=1e-05 Score=72.06 Aligned_cols=184 Identities=14% Similarity=0.075 Sum_probs=149.5
Q ss_pred HHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHH
Q 042593 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEA 224 (352)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a 224 (352)
+.+.|++.+|.-.|+..++..+. +...|..|.......++-..|+..+++..+..| |....-.|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~--haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ--HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH--HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 45789999999999999888655 889999999999999999999999998877655 688888999999999999999
Q ss_pred HHHHHHHHhcCCC--------CCcc-----hhh----hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHH
Q 042593 225 VENFERMQKVGLK--------PNRS-----WRI----GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287 (352)
Q Consensus 225 ~~~~~~m~~~~~~--------p~~~-----~~~----~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 287 (352)
.+.++..+....+ ++.. .+. .....++|-.+....+..+|+.+...|.-.|--.|++++|...
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 9999998654311 1111 111 5555566655555446668888889999999999999999999
Q ss_pred HhcCCCC-CCCchhhHHHHHHHHhcccccCcccccccchhhhhhH
Q 042593 288 ASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAA 331 (352)
Q Consensus 288 ~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 331 (352)
|+..... +.|...||.|...++...+.++|++.+.+++.-.|.-
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y 497 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY 497 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence 9988877 7788899999999999999999999999998766643
No 99
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.33 E-value=7.6e-05 Score=60.35 Aligned_cols=159 Identities=10% Similarity=0.066 Sum_probs=126.6
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHH
Q 042593 28 SFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGII 107 (352)
Q Consensus 28 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li 107 (352)
...-+.+.-.|+-+....+....... .+.|....+.++....+.|++..|...|.+...+++.-|.. |+.+-
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~-------~~~lg 141 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA-------WNLLG 141 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhh-------hhHHH
Confidence 45556666777777777666554332 24566677779999999999999999999988744444433 99999
Q ss_pred HHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCC
Q 042593 108 DGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC 187 (352)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 187 (352)
-+|.+.|+.+.|..-|.+..+..+- +...++.+...+.-.|+.+.|..++......+.. +..+-..+.......|+
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~--~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a--d~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPN--EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA--DSRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccC--CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC--chHHHHHHHHHHhhcCC
Confidence 9999999999999999998664432 3457788888899999999999999999887655 78888899999999999
Q ss_pred hHHHHHHHHHh
Q 042593 188 IFSASKLFEDT 198 (352)
Q Consensus 188 ~~~a~~~~~~~ 198 (352)
++.|.++...-
T Consensus 218 ~~~A~~i~~~e 228 (257)
T COG5010 218 FREAEDIAVQE 228 (257)
T ss_pred hHHHHhhcccc
Confidence 99999987654
No 100
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.32 E-value=0.00031 Score=63.79 Aligned_cols=285 Identities=14% Similarity=0.106 Sum_probs=177.5
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHh-CCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHH
Q 042593 28 SFLIRTCVTLSYPNLGTQLHAVFSKV-GFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGI 106 (352)
Q Consensus 28 ~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~l 106 (352)
-.-+..+.+.|++..-...|+..... .+......|...+......+-++-+..+++...+-++.. -+--
T Consensus 106 l~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~----------~eey 175 (835)
T KOG2047|consen 106 LDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEA----------REEY 175 (835)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHH----------HHHH
Confidence 33344444556666666666655432 223334567777777777788888888888877766655 5566
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhccC-----CCCChhhHHHHHHHHHhCCChh---hHHHHHHHHHhcCCCCCchhhHHHH
Q 042593 107 IDGYSRMNRSNEALALFRRMAACEY-----TEPSEITILAVLPAIWKNGEVR---NCQLIHGYGEKRGFNAFDIHVSNCL 178 (352)
Q Consensus 107 i~~~~~~~~~~~a~~~~~~m~~~~~-----~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l 178 (352)
|..++..+++++|-+.+.....+.. .+-+...|..+.+-.++.-+.- .+..+++.+...=... -...|.+|
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq-~g~Lw~SL 254 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQ-LGFLWCSL 254 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHH-HHHHHHHH
Confidence 7778899999999999888732211 1223345666655555543332 2344444443332222 35688999
Q ss_pred HHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcC----------------C------CHHHHHHHHHHHHhcCC
Q 042593 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH----------------G------MGKEAVENFERMQKVGL 236 (352)
Q Consensus 179 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~----------------~------~~~~a~~~~~~m~~~~~ 236 (352)
.+.|.++|.+++|.++|++......++.-|+.+.++|+.- + +++-.+.-|+.+.+.+.
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 9999999999999999998765555555555555555421 1 22233334444333221
Q ss_pred -CCCcchhh-------------------hHhHHHHHHHHHHhcCCCCC------hhhHHHHHHHHHHcCChhHHHHHHhc
Q 042593 237 -KPNRSWRI-------------------GEEGLKFFDKMVEECEVLPD------IKHYGCLIDILERAGRLEQAEEVASG 290 (352)
Q Consensus 237 -~p~~~~~~-------------------~~~a~~~~~~m~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~ 290 (352)
-.|+.... ..+-...+.+.++ .+.|. ...|..+.+.|-+.|+++.|..+|++
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~--~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVK--TVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHH--ccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 11111111 4444555666555 34442 34688899999999999999999999
Q ss_pred CCCC-CCC----chhhHHHHHHHHhcccccCcccccccch
Q 042593 291 IPSQ-ITN----VVVWRTGFLRLLINSYFFSPITLNSQRL 325 (352)
Q Consensus 291 m~~~-~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~ 325 (352)
.... -+. ..+|......=+++.+++.|+++++.+.
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 8776 222 2456666666678999999999888774
No 101
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.32 E-value=3.9e-05 Score=58.23 Aligned_cols=94 Identities=14% Similarity=0.048 Sum_probs=78.5
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCC-CCHhhHHHHHHHHHc
Q 042593 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR-KNLVSWTTIISGFAM 217 (352)
Q Consensus 139 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~li~~~~~ 217 (352)
+.....++...|++++|...++........ +...+..+..++.+.|++++|...|+...... .+...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW--SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 555677788899999999999988876543 78888899999999999999999999877664 467888888888999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 042593 218 HGMGKEAVENFERMQKV 234 (352)
Q Consensus 218 ~~~~~~a~~~~~~m~~~ 234 (352)
.|+.++|...|+...+.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999998764
No 102
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.31 E-value=9.3e-07 Score=48.68 Aligned_cols=33 Identities=27% Similarity=0.518 Sum_probs=31.1
Q ss_pred ccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCC
Q 042593 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQS 57 (352)
Q Consensus 25 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 57 (352)
.+|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
No 103
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.30 E-value=1.2e-06 Score=48.58 Aligned_cols=33 Identities=36% Similarity=0.591 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE 136 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 136 (352)
||.+|++|++.|++++|.++|++| ...|+.||.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M-~~~g~~p~~ 35 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEM-LERGIEPDV 35 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH-HHcCCCCCC
Confidence 899999999999999999999999 778888873
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=5.5e-05 Score=67.54 Aligned_cols=192 Identities=13% Similarity=0.069 Sum_probs=136.7
Q ss_pred HHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHH
Q 042593 32 RTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYS 111 (352)
Q Consensus 32 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~ 111 (352)
..+.+.|++.+|.-.|+..+... |-+...|-.|.......++-..|+..+.+..+-|+..-.+ .-.|.-.|.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nlea-------LmaLAVSyt 364 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEA-------LMALAVSYT 364 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHH-------HHHHHHHHh
Confidence 45668899999999999999877 5678999999999999999999999999887744433222 455666788
Q ss_pred hcCCHHHHHHHHHHhHhccC-----CC--CChhhHHHHHHHHHhCCChhhHHHHHHHH-HhcCCCCCchhhHHHHHHHHH
Q 042593 112 RMNRSNEALALFRRMAACEY-----TE--PSEITILAVLPAIWKNGEVRNCQLIHGYG-EKRGFNAFDIHVSNCLIDTYA 183 (352)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~~~-----~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~li~~~~ 183 (352)
..|.-..|+..++...+... .. ++...-.. ..+..........++|-++ .+.+... ++.+...|.-.|-
T Consensus 365 Neg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~-DpdvQ~~LGVLy~ 441 (579)
T KOG1125|consen 365 NEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKI-DPDVQSGLGVLYN 441 (579)
T ss_pred hhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCC-ChhHHhhhHHHHh
Confidence 88888888888877633220 00 01110000 1222223334444444444 3444335 7788888888899
Q ss_pred hhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 184 KCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 184 ~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
-.|++++|.+.|+......| |..+||.|-..++...+.++|+..|++.++.
T Consensus 442 ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL 493 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL 493 (579)
T ss_pred cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc
Confidence 99999999999998877765 6788999999999999999999999998874
No 105
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.27 E-value=0.00013 Score=69.31 Aligned_cols=144 Identities=7% Similarity=0.011 Sum_probs=115.3
Q ss_pred CCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCC
Q 042593 55 FQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT 132 (352)
Q Consensus 55 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 132 (352)
.+.++..+-.|.....+.|+.++|+.+++...+ ||... + ...+...+.+.+++++|+..+++... .
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~--a-------~~~~a~~L~~~~~~eeA~~~~~~~l~---~ 149 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE--A-------FILMLRGVKRQQGIEAGRAEIELYFS---G 149 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH--H-------HHHHHHHHHHhccHHHHHHHHHHHhh---c
Confidence 455678888899999999999999999999876 65433 1 66777889999999999999999844 3
Q ss_pred CCCh-hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHH
Q 042593 133 EPSE-ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTT 210 (352)
Q Consensus 133 ~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~ 210 (352)
.|+. .....+..++.+.|++++|..+|+++...+.. +..++..+..++.+.|+.++|...|+...+. .+.+..|+.
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~--~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPE--FENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 4554 46777888889999999999999999985433 6888999999999999999999999987654 555555554
Q ss_pred HH
Q 042593 211 II 212 (352)
Q Consensus 211 li 212 (352)
.+
T Consensus 228 ~~ 229 (694)
T PRK15179 228 RL 229 (694)
T ss_pred HH
Confidence 43
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.27 E-value=0.00013 Score=58.49 Aligned_cols=118 Identities=8% Similarity=0.025 Sum_probs=78.8
Q ss_pred cCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH-HhhCC--hH
Q 042593 113 MNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY-AKCGC--IF 189 (352)
Q Consensus 113 ~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~ 189 (352)
.++.+++...+++..+.. +.|...|..+...+...|+.++|...++...+.... +...+..+..++ ...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~--~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE--NAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCCCcH
Confidence 445555655555552322 244556777777777777777777777777776543 666676666653 56566 47
Q ss_pred HHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 190 SASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 190 ~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
+|.+++++..+..| +...+..+...+.+.|++++|...|+++.+.
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777777766544 5667777777777778888888888777764
No 107
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.00013 Score=69.35 Aligned_cols=197 Identities=14% Similarity=0.055 Sum_probs=131.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
|+.+.++-.+.|...+|.+-|-+. -|...|.-+++.+.+.|.+++-.+++....+..-.| .. =+.||-+|
T Consensus 1107 WsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~-~i--d~eLi~Ay 1176 (1666)
T KOG0985|consen 1107 WSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP-YI--DSELIFAY 1176 (1666)
T ss_pred HHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc-cc--hHHHHHHH
Confidence 888999999999999988877666 466689999999999999999999998888776655 43 45889999
Q ss_pred HhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh-hHhHHHHHHHHHHhcCC
Q 042593 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI-GEEGLKFFDKMVEECEV 261 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~~~a~~~~~~m~~~~~~ 261 (352)
++.+++.+.++++. .||......+-+-|...|.++.|.-+|...-.-. .-..|.. ..+-....+... -
T Consensus 1177 Akt~rl~elE~fi~-----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a--~La~TLV~LgeyQ~AVD~aR----K 1245 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFIA-----GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFA--KLASTLVYLGEYQGAVDAAR----K 1245 (1666)
T ss_pred HHhchHHHHHHHhc-----CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHHhh----h
Confidence 99999888776553 7787777778888888888888877776543210 0000000 000000111111 1
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC--CCCchhhHHHHHHHHhcccccCcccccccch
Q 042593 262 LPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ--ITNVVVWRTGFLRLLINSYFFSPITLNSQRL 325 (352)
Q Consensus 262 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 325 (352)
.-+..||-.+-.+|...+.+..|. |... .....-..-++.-|-..|.+++-+.+++-.+
T Consensus 1246 Ans~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1246 ANSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred ccchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 235567776666666666655443 3332 1123334567888888888888888776653
No 108
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.25 E-value=0.00032 Score=66.77 Aligned_cols=126 Identities=13% Similarity=0.082 Sum_probs=99.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh-hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI-TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 181 (352)
+-.|.....+.|.+++|..+++.... ..||.. ....+..++.+.+++++|....++....... +......+..+
T Consensus 89 ~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~--~~~~~~~~a~~ 163 (694)
T PRK15179 89 QVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS--SAREILLEAKS 163 (694)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC--CHHHHHHHHHH
Confidence 66777788888888888888888733 456654 6777788888888888888888888877654 67777788888
Q ss_pred HHhhCChHHHHHHHHHhccCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 182 YAKCGCIFSASKLFEDTSVDRKN-LVSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 182 ~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
+.+.|++++|..+|++.....|+ ..++..+-.++-..|+.++|...|+...+
T Consensus 164 l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 164 WDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888887765554 67788888888888888888888888776
No 109
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00025 Score=57.52 Aligned_cols=55 Identities=13% Similarity=-0.035 Sum_probs=27.4
Q ss_pred CCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccc
Q 042593 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYF 314 (352)
Q Consensus 260 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~ 314 (352)
+..|+..+.+-...++...|++++|+.++++...+ ..++.+...++..-...|..
T Consensus 202 k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 202 KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 34455555555555555555555555555555544 33344444444444444444
No 110
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.22 E-value=0.00037 Score=58.68 Aligned_cols=284 Identities=12% Similarity=0.011 Sum_probs=177.7
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHHHHhHHH
Q 042593 28 SFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGLVKWTG 105 (352)
Q Consensus 28 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~~~~~~~ 105 (352)
--+.+.+...|++..|+.-|...++-. +.+-.++-.-...|...|+-..|+.=+....+ ||-..- --.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~A---------RiQ 111 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAA---------RIQ 111 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHH---------HHH
Confidence 344555666667777766666665533 11222333334456666766666665555543 443211 111
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhccCC-----------CCChh--hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCch
Q 042593 106 IIDGYSRMNRSNEALALFRRMAACEYT-----------EPSEI--TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDI 172 (352)
Q Consensus 106 li~~~~~~~~~~~a~~~~~~m~~~~~~-----------~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 172 (352)
-...+.+.|+++.|..=|+..++...- .+... .....+..+.-.|+...|......+.+..+. +.
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W--da 189 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW--DA 189 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc--hh
Confidence 123567889999999988888432210 01111 1223445556678888898888888876544 88
Q ss_pred hhHHHHHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh-------
Q 042593 173 HVSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI------- 244 (352)
Q Consensus 173 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------- 244 (352)
..|..-..+|...|++..|+.=++...+. ..++.++-.+-..+...|+.+.++...++-++ +.||....-
T Consensus 190 ~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLK 267 (504)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHH
Confidence 88888899999999999988877766544 45667777777778888888888888877766 456654433
Q ss_pred -----------------hHhHHHHHHHHHHhcCCC---CChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHH
Q 042593 245 -----------------GEEGLKFFDKMVEECEVL---PDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRT 303 (352)
Q Consensus 245 -----------------~~~a~~~~~~m~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~ 303 (352)
+.++.+-.++..+. ... .....+..+-.++...|++.+|.+...+.... +.|+.++.-
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~-ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~d 346 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKN-EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHH
Confidence 33333333333332 111 11234445566777888899998888877766 445777777
Q ss_pred HHHHHHhcccccCcccccccchh
Q 042593 304 GFLRLLINSYFFSPITLNSQRLF 326 (352)
Q Consensus 304 li~~~~~~g~~~~a~~~~~~~~~ 326 (352)
=..+|+-...+++|+.-+..+..
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHh
Confidence 77888888888888876665543
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.20 E-value=3.7e-05 Score=58.34 Aligned_cols=103 Identities=9% Similarity=-0.203 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
+..+...+...|++++|...|+...... +.+...+..+..++.+.|++++|...++...+.... +...+..+..++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~--~~~a~~~lg~~l 102 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS--HPEPVYQTGVCL 102 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CcHHHHHHHHHH
Confidence 4456677889999999999999984422 235668999999999999999999999999987544 889999999999
Q ss_pred HhhCChHHHHHHHHHhccCCCC-HhhHH
Q 042593 183 AKCGCIFSASKLFEDTSVDRKN-LVSWT 209 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~~~~-~~~~~ 209 (352)
.+.|+.++|...|+......|+ ...|.
T Consensus 103 ~~~g~~~eAi~~~~~Al~~~p~~~~~~~ 130 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKMSYADASWSE 130 (144)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 9999999999999998776665 44443
No 112
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.0015 Score=53.16 Aligned_cols=170 Identities=13% Similarity=0.043 Sum_probs=95.2
Q ss_pred HHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 042593 46 LHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRR 125 (352)
Q Consensus 46 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~ 125 (352)
+.+++.......+......-...|++.|++++|++.......-+... .=+..+.+..+.+-|.+.+++
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~A------------l~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAA------------LNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 34444444434443434444456667777777777776633222222 222334556667777777777
Q ss_pred hHhccCCCCChhhHHHHHHHHHh----CCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC
Q 042593 126 MAACEYTEPSEITILAVLPAIWK----NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201 (352)
Q Consensus 126 m~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 201 (352)
| .+. -+..|.+.+..++.+ .+.+.+|.-+|++|.+. ..| +.-+.+-...++...|++++|..++++....
T Consensus 163 m-q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~-T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 163 M-QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPP-TPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred H-Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCC-ChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 7 321 234456555555543 34567777777777653 223 6666666677777777777777777776555
Q ss_pred -CCCHhhHHHHHHHHHcCCCH-HHHHHHHHHHHh
Q 042593 202 -RKNLVSWTTIISGFAMHGMG-KEAVENFERMQK 233 (352)
Q Consensus 202 -~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~ 233 (352)
..++.+...+|.+-...|.. +-..+...+++.
T Consensus 237 d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 237 DAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 34555655555554455544 334455555554
No 113
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.15 E-value=3.2e-06 Score=45.34 Aligned_cols=31 Identities=35% Similarity=0.697 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 042593 206 VSWTTIISGFAMHGMGKEAVENFERMQKVGL 236 (352)
Q Consensus 206 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 236 (352)
.+||+++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3788888888888888888888888888764
No 114
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.15 E-value=0.00015 Score=55.12 Aligned_cols=127 Identities=10% Similarity=0.081 Sum_probs=96.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCc--hhhHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEP-SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD--IHVSNCLI 179 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li 179 (352)
|..++..+ ..++...+...++.+....+-.| .......+...+...|++++|...|+........+ . ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~-~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDP-ELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH-HHHHHHHHHHH
Confidence 66667766 48999999999999944322111 12344556678889999999999999999877433 3 23445678
Q ss_pred HHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 042593 180 DTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231 (352)
Q Consensus 180 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 231 (352)
..+...|++++|+..++...........+...-..|.+.|+.++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 8899999999999999886544556667778888999999999999999863
No 115
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.14 E-value=0.0032 Score=56.86 Aligned_cols=194 Identities=12% Similarity=0.011 Sum_probs=122.9
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHH
Q 042593 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGI 106 (352)
Q Consensus 27 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~l 106 (352)
.-+=++-+...|++++|.+....+...+ +-+...+..=+-+....+++++|+++.+.-..- .+++.. +--=
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~------~fEK 85 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSF------FFEK 85 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchh------hHHH
Confidence 3344566777888899999888888766 445566666677788889999999776654321 121110 1111
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCC---------------
Q 042593 107 IDGYSRMNRSNEALALFRRMAACEYTEPS-EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF--------------- 170 (352)
Q Consensus 107 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 170 (352)
..+.-+.+..++|+..++-. .++ ..+...-...+.+.|++++|..+|+.+.+.+....
T Consensus 86 AYc~Yrlnk~Dealk~~~~~------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLKGL------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHcccHHHHHHHHhcc------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 22344678888888887744 233 33566666677888999999999988866533310
Q ss_pred -----------chhhHHHH---HHHHHhhCChHHHHHHHHHhcc--------CCCC-------Hhh-HHHHHHHHHcCCC
Q 042593 171 -----------DIHVSNCL---IDTYAKCGCIFSASKLFEDTSV--------DRKN-------LVS-WTTIISGFAMHGM 220 (352)
Q Consensus 171 -----------~~~~~~~l---i~~~~~~g~~~~a~~~~~~~~~--------~~~~-------~~~-~~~li~~~~~~~~ 220 (352)
...+|..+ ...+...|++..|+++++...+ ...+ +.+ ---|.-.+-..|+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 11233333 2345578999999999987621 1111 111 1123445678899
Q ss_pred HHHHHHHHHHHHhcC
Q 042593 221 GKEAVENFERMQKVG 235 (352)
Q Consensus 221 ~~~a~~~~~~m~~~~ 235 (352)
.++|..++...++..
T Consensus 240 t~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRN 254 (652)
T ss_pred hHHHHHHHHHHHHhc
Confidence 999999999988764
No 116
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.13 E-value=8.5e-05 Score=65.48 Aligned_cols=123 Identities=11% Similarity=0.055 Sum_probs=94.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
-..|++.+...++++.|..+|+++ .... |+ ....+++.+...++-.+|.+++++..+.... +........+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L-~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~--d~~LL~~Qa~fL 244 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKL-RERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ--DSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHH-HhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Confidence 445566677778888999999988 4332 44 4445777777778888888888888765433 667777777888
Q ss_pred HhhCChHHHHHHHHHhccCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042593 183 AKCGCIFSASKLFEDTSVDRKN-LVSWTTIISGFAMHGMGKEAVENFERMQ 232 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 232 (352)
.+.++.+.|+++.++.....|+ ..+|..|..+|...|++++|+-.++.+-
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8889999999999888776664 5688899999999999999988888764
No 117
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.12 E-value=0.0016 Score=60.49 Aligned_cols=175 Identities=10% Similarity=-0.016 Sum_probs=113.7
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCC--chhHHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN--LVTWNVIITGL 100 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~i~~~ 100 (352)
|...|..+.-++.+.|+++.+-+.|++....- --..+.|..+...|.-.|.-..|..+.++-..+. +.....++.+.
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 88889999999999999999999998876533 2345678888888888888888888888765422 21122222221
Q ss_pred H---------------------------------hHHHHHHHHHhc-----------CCHHHHHHHHHHhHhccCCCCCh
Q 042593 101 V---------------------------------KWTGIIDGYSRM-----------NRSNEALALFRRMAACEYTEPSE 136 (352)
Q Consensus 101 ~---------------------------------~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~~~~~p~~ 136 (352)
. .|-.+.-+|... ....++++.+++..+..+-.|+.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 1 111121122111 11345666666664445555555
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC
Q 042593 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201 (352)
Q Consensus 137 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 201 (352)
.-|.++- |+..++++.|.+..++..+.+... +...|..|.-.+...+++.+|+.+.+.....
T Consensus 481 if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~-~~~~whLLALvlSa~kr~~~Al~vvd~al~E 542 (799)
T KOG4162|consen 481 IFYLALQ--YAEQRQLTSALDYAREALALNRGD-SAKAWHLLALVLSAQKRLKEALDVVDAALEE 542 (799)
T ss_pred HHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 4444443 455667888888888888875555 7888888888888888888888887765433
No 118
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.10 E-value=9.9e-05 Score=65.07 Aligned_cols=96 Identities=11% Similarity=0.020 Sum_probs=56.9
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHc
Q 042593 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAM 217 (352)
Q Consensus 139 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~ 217 (352)
...++..+...++++.|..+++++.+.. | .+...+++.+...++-.+|.+++++.....| +..........|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--p---ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--P---EVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--C---cHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 4455555556666677777777666553 2 2333456666666666666666666554433 55555555566666
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCcc
Q 042593 218 HGMGKEAVENFERMQKVGLKPNRS 241 (352)
Q Consensus 218 ~~~~~~a~~~~~~m~~~~~~p~~~ 241 (352)
.++.+.|..+.+++.+ ..|+..
T Consensus 247 k~~~~lAL~iAk~av~--lsP~~f 268 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE--LSPSEF 268 (395)
T ss_pred cCCHHHHHHHHHHHHH--hCchhH
Confidence 6677777777766665 345544
No 119
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.10 E-value=0.0015 Score=57.71 Aligned_cols=118 Identities=14% Similarity=0.088 Sum_probs=59.0
Q ss_pred HHhcCCHHHHHHHHHHhHhccCCCCCh-hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCCh
Q 042593 110 YSRMNRSNEALALFRRMAACEYTEPSE-ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188 (352)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 188 (352)
+...|++++|+..++.+.+. .||. .-.......+.+.++.++|.+.++.+...... .....-.+.++|.+.|+.
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~--~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN--SPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHhcCCh
Confidence 33455555555555555221 2332 23334444455555555555555555544322 234444555555555555
Q ss_pred HHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042593 189 FSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQ 232 (352)
Q Consensus 189 ~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 232 (352)
.+|.+.++..... +-|+..|..|.++|...|+..++..-..+..
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 5555555554433 2345555555555555555555555554443
No 120
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.07 E-value=0.00011 Score=55.17 Aligned_cols=94 Identities=7% Similarity=-0.025 Sum_probs=57.6
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCC-CCHhhHHHHHHHHH
Q 042593 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR-KNLVSWTTIISGFA 216 (352)
Q Consensus 138 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~li~~~~ 216 (352)
....+...+...|+.++|...++.+.+.+.. +...+..+..++.+.|++++|...++...... .+...+..+...+.
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPY--NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 4455555566666666666666666655432 55666666666666666666666666654443 34555555666666
Q ss_pred cCCCHHHHHHHHHHHHh
Q 042593 217 MHGMGKEAVENFERMQK 233 (352)
Q Consensus 217 ~~~~~~~a~~~~~~m~~ 233 (352)
..|++++|...|++..+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 97 ALGEPESALKALDLAIE 113 (135)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666666554
No 121
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.00075 Score=57.12 Aligned_cols=60 Identities=10% Similarity=0.109 Sum_probs=37.6
Q ss_pred cHHHHHH-HHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCC
Q 042593 26 TYSFLIR-TCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP 86 (352)
Q Consensus 26 ~~~~ll~-~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 86 (352)
..+..|. .+-+.|++++|+..+..+.... .++...+-.|..++--.|.+.+|..+-.+..
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~ 118 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAP 118 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCC
Confidence 3444443 4447899999999988877654 4555555555555555566666666655554
No 122
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=0.00085 Score=59.72 Aligned_cols=98 Identities=12% Similarity=0.080 Sum_probs=52.0
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHH-------HH
Q 042593 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTI-------IS 213 (352)
Q Consensus 142 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l-------i~ 213 (352)
+.++.-+..+++.+.+-+....... . +..-++..-.+|...|++..+...-+....... ...-|+.+ -.
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~-~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--T-DITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--h-hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 3444444445555555555554444 2 455555666666666666555554444322211 11223332 23
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCCcch
Q 042593 214 GFAMHGMGKEAVENFERMQKVGLKPNRSW 242 (352)
Q Consensus 214 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 242 (352)
+|.+.++++.|...|.+......+|+..+
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls 335 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLS 335 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHH
Confidence 45566788888888888776655655443
No 123
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.03 E-value=0.0015 Score=57.63 Aligned_cols=206 Identities=10% Similarity=-0.001 Sum_probs=134.5
Q ss_pred HHHHHHhCCCCc--hhhHHHHHHHHHhc--------------CChhHHHHHhccCCCC---CchhHHHHHHHHHhHHHHH
Q 042593 47 HAVFSKVGFQSH--VYVNTALGDMYVSL--------------GFLKDSSKLFDELPER---NLVTWNVIITGLVKWTGII 107 (352)
Q Consensus 47 ~~~m~~~~~~~~--~~~~~~li~~~~~~--------------g~~~~a~~~~~~m~~~---~~~~~~~~i~~~~~~~~li 107 (352)
+..+.+.|..|. +.+|..+-+.+... .++.+++..-+.++.+ |...+.. +...+
T Consensus 209 i~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~-------~~~r~ 281 (484)
T COG4783 209 ITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHPLPEERIADLRNRAEQSPPYNKLDSPDFQL-------ARARI 281 (484)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCCCchhHHHHHHHHHHhCCCCCCCCCccHHH-------HHHHH
Confidence 445555665554 34555555544222 2455566666666641 2222111 45555
Q ss_pred HHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCC
Q 042593 108 DGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC 187 (352)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 187 (352)
.+......-..+..++.+- .+. .-...-|..-+ .....|+.+.|+..++.+.+.... |+..+....+.+.+.++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~-~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~P~--N~~~~~~~~~i~~~~nk 355 (484)
T COG4783 282 RAKYEALPNQQAADLLAKR-SKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQPD--NPYYLELAGDILLEANK 355 (484)
T ss_pred HHHhccccccchHHHHHHH-hCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCC
Confidence 5444433333333333333 221 11122333333 345778999999999998877443 78888888999999999
Q ss_pred hHHHHHHHHHhccCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChh
Q 042593 188 IFSASKLFEDTSVDRKN-LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIK 266 (352)
Q Consensus 188 ~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 266 (352)
.++|.+.++.+....|+ ....-.+..+|.+.|+.++|..++++... ..+-|+.
T Consensus 356 ~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--------------------------~~p~dp~ 409 (484)
T COG4783 356 AKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--------------------------NDPEDPN 409 (484)
T ss_pred hHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--------------------------cCCCCch
Confidence 99999999999887787 56667778899999999999999998776 3344777
Q ss_pred hHHHHHHHHHHcCChhHHHHHHhcC
Q 042593 267 HYGCLIDILERAGRLEQAEEVASGI 291 (352)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~m 291 (352)
.|..|..+|...|+..+|.....+.
T Consensus 410 ~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 410 GWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHHHHhCchHHHHHHHHHH
Confidence 8888888888888887777665554
No 124
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.02 E-value=0.0038 Score=57.07 Aligned_cols=118 Identities=10% Similarity=0.142 Sum_probs=85.1
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC----------CCchh
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE----------RNLVT 92 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----------~~~~~ 92 (352)
....|...++.....+-++.+..+++.-.+.. +..-+--|..+++.+++++|.+.+..... .+...
T Consensus 137 H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~ql 212 (835)
T KOG2047|consen 137 HDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQL 212 (835)
T ss_pred hccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhH
Confidence 56677778888888888888899888876543 44466678899999999999999888763 12333
Q ss_pred HHHHHHHHH----------------------------hHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHH
Q 042593 93 WNVIITGLV----------------------------KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144 (352)
Q Consensus 93 ~~~~i~~~~----------------------------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~ 144 (352)
|.-+-+-.+ -|++|.+-|.+.|.+++|-++|++... . ..+..-|+.+.+
T Consensus 213 w~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~-~--v~tvrDFt~ifd 289 (835)
T KOG2047|consen 213 WLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQ-T--VMTVRDFTQIFD 289 (835)
T ss_pred HHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-h--heehhhHHHHHH
Confidence 443333333 689999999999999999999998723 2 234445666666
Q ss_pred HHH
Q 042593 145 AIW 147 (352)
Q Consensus 145 ~~~ 147 (352)
+|+
T Consensus 290 ~Ya 292 (835)
T KOG2047|consen 290 AYA 292 (835)
T ss_pred HHH
Confidence 664
No 125
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=0.00077 Score=54.41 Aligned_cols=189 Identities=14% Similarity=0.045 Sum_probs=128.1
Q ss_pred cCCHHHHHHHHHHhHhc--cC-CCCChh-hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCCh
Q 042593 113 MNRSNEALALFRRMAAC--EY-TEPSEI-TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188 (352)
Q Consensus 113 ~~~~~~a~~~~~~m~~~--~~-~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 188 (352)
..+.++.++++.++... .| ..++.. .|..++-+....|+.+.|...++++...-.. +..+-..-.-.+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~--S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG--SKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhch
Confidence 44677788887777322 22 445554 4667777777888888888888888766422 333333333345567888
Q ss_pred HHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhh
Q 042593 189 FSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKH 267 (352)
Q Consensus 189 ~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 267 (352)
++|.++++.+....| |..++-.-+...-..|+--+|++-+.+..+ .+.-|...
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--------------------------~F~~D~EA 156 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--------------------------KFMNDQEA 156 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--------------------------HhcCcHHH
Confidence 889999988876655 566666666666667777777777777666 55668899
Q ss_pred HHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcc---cccCcccccccchhhhh
Q 042593 268 YGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINS---YFFSPITLNSQRLFFFP 329 (352)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~ 329 (352)
|.-+-..|...|+++.|.-.++++.-. |.+..-+..+...+...| +.+.|.+++.+.+..=|
T Consensus 157 W~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 157 WHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 999999999999999999998888766 455555556665544433 34455666666655444
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.01 E-value=8.5e-05 Score=55.69 Aligned_cols=92 Identities=7% Similarity=-0.060 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHH
Q 042593 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGI 106 (352)
Q Consensus 27 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~l 106 (352)
...+...+...|++++|.+.++.....+ +.+...+..+..++.+.|++++|...++...+.++..... +..+
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-------~~~l 91 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRP-------YFHA 91 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHH-------HHHH
Confidence 3344444445555555555555554443 3344555555555555555555555555543321111111 4444
Q ss_pred HHHHHhcCCHHHHHHHHHHh
Q 042593 107 IDGYSRMNRSNEALALFRRM 126 (352)
Q Consensus 107 i~~~~~~~~~~~a~~~~~~m 126 (352)
...+...|++++|...|++.
T Consensus 92 a~~~~~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 92 AECLLALGEPESALKALDLA 111 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 44555555555555555554
No 127
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.99 E-value=0.00062 Score=62.92 Aligned_cols=185 Identities=13% Similarity=0.113 Sum_probs=109.3
Q ss_pred HHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCCh
Q 042593 109 GYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188 (352)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 188 (352)
+...+.+|.+|+.+++.+ +... .-.--|..+..-|+..|+++-|+++|-+ ...++-.|..|.+.|++
T Consensus 741 aai~akew~kai~ildni-qdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e----------~~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNI-QDQK--TASGYYGEIADHYANKGDFEIAEELFTE----------ADLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHhhhhhhhhhHhHHHHh-hhhc--cccccchHHHHHhccchhHHHHHHHHHh----------cchhHHHHHHHhccccH
Confidence 344556777777777776 4332 1223466777778888888888877753 23355667888888888
Q ss_pred HHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh------hHhHHHHHHHHHHhcCCC
Q 042593 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI------GEEGLKFFDKMVEECEVL 262 (352)
Q Consensus 189 ~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------~~~a~~~~~~m~~~~~~~ 262 (352)
++|.++-.+..........|-+-..-+-.+|++.+|+++|-.+.. |+...-. .+..+++.++-- -.
T Consensus 808 ~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~aiqmydk~~~~ddmirlv~k~h----~d 879 (1636)
T KOG3616|consen 808 EDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDKAIQMYDKHGLDDDMIRLVEKHH----GD 879 (1636)
T ss_pred HHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chHHHHHHHhhCcchHHHHHHHHhC----hh
Confidence 888888877754445566676666667777777777776643322 2211111 222222222211 11
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHHHhcccccCccccc
Q 042593 263 PDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLN 321 (352)
Q Consensus 263 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 321 (352)
.-..|--.+..-|-..|+...|+.-|-+..+ |.+-++.|-.++.+++|-++.
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea~d-------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD-------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhhhh-------HHHHHHHhhhhhhHHHHHHHH
Confidence 1123445566777778888888877766654 444455555555555554443
No 128
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.97 E-value=0.0018 Score=64.99 Aligned_cols=295 Identities=8% Similarity=-0.060 Sum_probs=180.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHhCC------CCc--hhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHH
Q 042593 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGF------QSH--VYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVI 96 (352)
Q Consensus 27 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~------~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~ 96 (352)
.......+...|+++++..+++.....-- .+. ......+...+...|++++|...+++..+ +....+...
T Consensus 412 ~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 491 (903)
T PRK04841 412 VLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRI 491 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHH
Confidence 33444555678899999998887754310 111 12223344556678999999998887543 221111110
Q ss_pred HHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccC-C-CCC--hhhHHHHHHHHHhCCChhhHHHHHHHHHhc----CCC
Q 042593 97 ITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY-T-EPS--EITILAVLPAIWKNGEVRNCQLIHGYGEKR----GFN 168 (352)
Q Consensus 97 i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~-~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~ 168 (352)
. ..+.+...+...|++++|...+.+...... . .+. ..++..+...+...|++++|...+++.... +..
T Consensus 492 -~---a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 567 (903)
T PRK04841 492 -V---ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLE 567 (903)
T ss_pred -H---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccc
Confidence 0 156667778889999999999988732211 0 111 234556667788899999999988876543 221
Q ss_pred --CCchhhHHHHHHHHHhhCChHHHHHHHHHhccC----CC--CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCc
Q 042593 169 --AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD----RK--NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240 (352)
Q Consensus 169 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 240 (352)
+.....+..+...+...|++++|...+++.... .+ ....+..+...+...|+.++|...+.+.....-....
T Consensus 568 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~ 647 (903)
T PRK04841 568 QLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRY 647 (903)
T ss_pred cccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc
Confidence 101233445566777889999999998875432 22 2344555667788999999999999887553111110
Q ss_pred ch-hh----------------hHhHHHHHHHHHHhcCCCCC---hhhHHHHHHHHHHcCChhHHHHHHhcCCCC---CC-
Q 042593 241 SW-RI----------------GEEGLKFFDKMVEECEVLPD---IKHYGCLIDILERAGRLEQAEEVASGIPSQ---IT- 296 (352)
Q Consensus 241 ~~-~~----------------~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~- 296 (352)
.. .. .+.+..++...... ..... ...+..+..++...|+.++|...+++.... ..
T Consensus 648 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~ 726 (903)
T PRK04841 648 HSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRL 726 (903)
T ss_pred cHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCc
Confidence 00 00 33333333332211 11111 111346777888999999999988876543 11
Q ss_pred ---CchhhHHHHHHHHhcccccCcccccccchh
Q 042593 297 ---NVVVWRTGFLRLLINSYFFSPITLNSQRLF 326 (352)
Q Consensus 297 ---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 326 (352)
...+...+..++...|+.++|...+.+.+.
T Consensus 727 ~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 727 MSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 123566667778899999999888888754
No 129
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.90 E-value=0.00042 Score=52.71 Aligned_cols=128 Identities=11% Similarity=0.087 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHhccCCCCCchh-HHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh--
Q 042593 60 YVNTALGDMYVSLGFLKDSSKLFDELPERNLVT-WNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE-- 136 (352)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-- 136 (352)
..|..++..+ ..++...+...++.+.+....+ |..+. .-.+...+...|++++|...|+.. ......|+.
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A-----~l~lA~~~~~~g~~~~A~~~l~~~-~~~~~d~~l~~ 85 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALA-----ALQLAKAAYEQGDYDEAKAALEKA-LANAPDPELKP 85 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHH-----HHHHHHHHHHCCCHHHHHHHHHHH-HhhCCCHHHHH
Confidence 3455555555 3677777777777766522222 33322 344556777778888888888887 433322322
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHH
Q 042593 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197 (352)
Q Consensus 137 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 197 (352)
.....+...+...|++++|...++....... ....+....++|.+.|+.++|...|+.
T Consensus 86 ~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~---~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 86 LARLRLARILLQQGQYDEALATLQQIPDEAF---KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhccCcch---HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2344556667778888888888766433222 445666777888888888888887765
No 130
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.90 E-value=1.3e-05 Score=42.91 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=21.4
Q ss_pred cHHHHHHHHHhcCCcchHHHHHHHHHHhCC
Q 042593 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGF 55 (352)
Q Consensus 26 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 55 (352)
+|++++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677777777777777777777777776653
No 131
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.89 E-value=0.00016 Score=50.71 Aligned_cols=81 Identities=15% Similarity=0.031 Sum_probs=64.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCC-CCChhhHHHHHHHHHhCC--------ChhhHHHHHHHHHhcCCCCCchh
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYT-EPSEITILAVLPAIWKNG--------EVRNCQLIHGYGEKRGFNAFDIH 173 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 173 (352)
-...|..+...+++.....+|+.+ ++.|+ .|+..+|+.++.+.+++. ++-....+|+.|...++.| +..
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqsl-kRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP-~~e 105 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSL-KRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKP-NDE 105 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHH-HhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCC-cHH
Confidence 344555566669999999999999 88888 899999999999988764 2445678888888888888 888
Q ss_pred hHHHHHHHHHhh
Q 042593 174 VSNCLIDTYAKC 185 (352)
Q Consensus 174 ~~~~li~~~~~~ 185 (352)
+|+.++..+.+.
T Consensus 106 tYnivl~~Llkg 117 (120)
T PF08579_consen 106 TYNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHHh
Confidence 888888877653
No 132
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.86 E-value=0.00019 Score=63.68 Aligned_cols=123 Identities=8% Similarity=-0.008 Sum_probs=100.6
Q ss_pred hCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC-CCch---hHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 042593 53 VGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE-RNLV---TWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128 (352)
Q Consensus 53 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~---~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 128 (352)
.+.+-+......+++.+....+++.+..++-+... |+.. .++ ..++++.|...|..++++.+++.= .
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t--------~ha~vR~~l~~~~~~~~l~~L~n~-~ 130 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPST--------HHALVRQCLELGAEDELLELLKNR-L 130 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCcc--------HHHHHHHHHhcCCHHHHHHHHhCh-h
Confidence 34466777888889999888999999988888764 2221 111 668999999999999999999998 8
Q ss_pred ccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhh
Q 042593 129 CEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC 185 (352)
Q Consensus 129 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 185 (352)
..|+-||.+|++.++..+.+.|++..|.++..+|...+... +..++..-+.+|.+.
T Consensus 131 ~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~-~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 131 QYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFD-NPSTQALALYSCYKY 186 (429)
T ss_pred hcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccC-CchHHHHHHHHHHHh
Confidence 89999999999999999999999999999999998887766 777777666666665
No 133
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.002 Score=53.31 Aligned_cols=253 Identities=9% Similarity=-0.021 Sum_probs=128.4
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHH-HHHHHHhcCChhHHHHHhccCCC-CCchhHHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTA-LGDMYVSLGFLKDSSKLFDELPE-RNLVTWNVIITGL 100 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~i~~~ 100 (352)
+......+...|-+..++..|-+.++++...- |...-|.. -...+-+.+.+.+|+++...|.. ++...-..-+.+
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqa- 119 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQA- 119 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHH-
Confidence 55667777788888889999999999887654 43333321 12344466778888888777765 222211111111
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHH
Q 042593 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180 (352)
Q Consensus 101 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 180 (352)
...-+.+|+..+..++++. ... -+..+.+.......+.|+++.|.+-|+...+-+--. ....||..+
T Consensus 120 -------AIkYse~Dl~g~rsLveQl-p~e---n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniAL- 186 (459)
T KOG4340|consen 120 -------AIKYSEGDLPGSRSLVEQL-PSE---NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLAL- 186 (459)
T ss_pred -------HHhcccccCcchHHHHHhc-cCC---CccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHH-
Confidence 1112345555555555555 111 122222233333345555555555555554433222 334444333
Q ss_pred HHHhhCChHHHHHHHHHhccC---------------CCCH---------------hhHHHHHHHHHcCCCHHHHHHHHHH
Q 042593 181 TYAKCGCIFSASKLFEDTSVD---------------RKNL---------------VSWTTIISGFAMHGMGKEAVENFER 230 (352)
Q Consensus 181 ~~~~~g~~~~a~~~~~~~~~~---------------~~~~---------------~~~~~li~~~~~~~~~~~a~~~~~~ 230 (352)
+.-+.|+.+.|++...++... .||+ ..+|.-...+.+.|+++.|.+.+-.
T Consensus 187 aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtD 266 (459)
T KOG4340|consen 187 AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTD 266 (459)
T ss_pred HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhc
Confidence 233344555555555443321 1111 1122223334556666666666655
Q ss_pred HHhc-CCCCCcchhh----------hHhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 231 MQKV-GLKPNRSWRI----------GEEGLKFFDKMVEECEVLP-DIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 231 m~~~-~~~p~~~~~~----------~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
|--+ .-..|..|.. +....+-++-+. ++.| ...||..++-.|||..-++.|-.++-+-...
T Consensus 267 mPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL---~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~l 339 (459)
T KOG4340|consen 267 MPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLL---QQNPFPPETFANLLLLYCKNEYFDLAADVLAENAHL 339 (459)
T ss_pred CCCcccccCCchhhhHHHHhcccCCccccHHHHHHHH---hcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch
Confidence 5321 2233344433 112222222222 2233 4578888999999999999999888775554
No 134
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.019 Score=55.40 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHHHhccccc
Q 042593 265 IKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFF 315 (352)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~ 315 (352)
+..|..|...+...|+++.|...-++.. +..+|...-.+|...+.+.
T Consensus 1220 vSN~a~La~TLV~LgeyQ~AVD~aRKAn----s~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1220 VSNFAKLASTLVYLGEYQGAVDAARKAN----STKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhcc----chhHHHHHHHHHhchhhhh
Confidence 3345555555555555555555554443 4455665555555554443
No 135
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.0014 Score=61.50 Aligned_cols=259 Identities=13% Similarity=0.062 Sum_probs=139.2
Q ss_pred hcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCC
Q 042593 36 TLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNR 115 (352)
Q Consensus 36 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~ 115 (352)
+.|.+++|+.+|++.++.. .|=..|...|.+++|.++-+.=.. +..-+ ||..-..-+-..+|
T Consensus 812 eLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DR--iHLr~-------Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDR--IHLRN-------TYYNYAKYLEARRD 873 (1416)
T ss_pred HHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccc--eehhh-------hHHHHHHHHHhhcc
Confidence 3445555555555444322 233445555666666555443211 11111 15555555666777
Q ss_pred HHHHHHHHHHh----------HhccC--------CCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHH
Q 042593 116 SNEALALFRRM----------AACEY--------TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177 (352)
Q Consensus 116 ~~~a~~~~~~m----------~~~~~--------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 177 (352)
.+.|++.|++. ++... ...|...|.-....+-..|+++.|..+|...+ -|-+
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~----------D~fs 943 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK----------DYFS 943 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh----------hhhh
Confidence 88888777754 11110 01233334444444555677777777766432 2445
Q ss_pred HHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc----------CCCCCcchhh---
Q 042593 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV----------GLKPNRSWRI--- 244 (352)
Q Consensus 178 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----------~~~p~~~~~~--- 244 (352)
+++..|-.|+.++|-++-++- -|......|.+-|-..|++.+|...|.+.... +++....+..
T Consensus 944 ~VrI~C~qGk~~kAa~iA~es----gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s 1019 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEES----GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMS 1019 (1416)
T ss_pred heeeEeeccCchHHHHHHHhc----ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Confidence 666666777777777766543 35555666777788888888888888775431 1110000000
Q ss_pred ----hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHh---------cCCCC---CCCchhhHHHHHHH
Q 042593 245 ----GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS---------GIPSQ---ITNVVVWRTGFLRL 308 (352)
Q Consensus 245 ----~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~---------~m~~~---~~~~~~~~~li~~~ 308 (352)
.-.|-++|++. |. -+..-+..|-++|-+.+|.++-- -+.+. ..|+...+.-..-+
T Consensus 1020 ~~~d~v~aArYyEe~----g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF 1090 (1416)
T KOG3617|consen 1020 GGSDLVSAARYYEEL----GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFF 1090 (1416)
T ss_pred CchhHHHHHHHHHHc----ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 22333333332 11 12334556778888888876522 11111 45667777777778
Q ss_pred HhcccccCcccccccchhhhhhHHHHhh
Q 042593 309 LINSYFFSPITLNSQRLFFFPAALYALT 336 (352)
Q Consensus 309 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 336 (352)
..+.++++|..+..... .|..++..|.
T Consensus 1091 ~~~~qyekAV~lL~~ar-~~~~AlqlC~ 1117 (1416)
T KOG3617|consen 1091 ENNQQYEKAVNLLCLAR-EFSGALQLCK 1117 (1416)
T ss_pred HhHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 88899998888776654 2333444443
No 136
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.019 Score=52.13 Aligned_cols=114 Identities=11% Similarity=-0.014 Sum_probs=72.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHH--------HHHhcCCCCCcchhh----------------hHhHHHHHHHHHHhcCCC
Q 042593 207 SWTTIISGFAMHGMGKEAVENFE--------RMQKVGLKPNRSWRI----------------GEEGLKFFDKMVEECEVL 262 (352)
Q Consensus 207 ~~~~li~~~~~~~~~~~a~~~~~--------~m~~~~~~p~~~~~~----------------~~~a~~~~~~m~~~~~~~ 262 (352)
.--.+++.....|+++.|.+++. .+.+.+-.|-..... .++|...|..-... . .
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~-s-~ 455 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTG-S-I 455 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhccc-c-h
Confidence 34455666778889999988888 566655566554444 45555555443221 1 1
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCccccccc
Q 042593 263 PDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQ 323 (352)
Q Consensus 263 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 323 (352)
--..++......-.+.|+-++|..+++++... +++..+...++.+|+.. +.++|..+.+.
T Consensus 456 ~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 456 ALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 11223444445556779999999999988876 77888888888887765 34555544443
No 137
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.80 E-value=0.00055 Score=63.99 Aligned_cols=181 Identities=10% Similarity=0.100 Sum_probs=108.5
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHh-C-------C-CCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKV-G-------F-QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTW 93 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~-------~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~ 93 (352)
+...|..+.+-|.+.++++-|.-.+-.|... | . .|+ .+=..+.-.....|.+++|+.+|.+.+.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR------ 828 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR------ 828 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH------
Confidence 4557888888888888888887777666531 1 1 222 2222333344577889999999888764
Q ss_pred HHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCC-----
Q 042593 94 NVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN----- 168 (352)
Q Consensus 94 ~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----- 168 (352)
|..|=+.|...|.|++|.++-+.- .+ + .=..||.....-+...+|++.|.+.|+........
T Consensus 829 ---------~DLlNKlyQs~g~w~eA~eiAE~~-DR--i-HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL 895 (1416)
T KOG3617|consen 829 ---------YDLLNKLYQSQGMWSEAFEIAETK-DR--I-HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRML 895 (1416)
T ss_pred ---------HHHHHHHHHhcccHHHHHHHHhhc-cc--e-ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHH
Confidence 555557788899999998886544 21 1 12346777777777788888888777653221100
Q ss_pred ---C----------CchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 042593 169 ---A----------FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230 (352)
Q Consensus 169 ---~----------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 230 (352)
| .+...|.=....+-..|+.+.|+.++...+ -|-+++...|-.|+.++|-.+-++
T Consensus 896 ~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-------D~fs~VrI~C~qGk~~kAa~iA~e 963 (1416)
T KOG3617|consen 896 KEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-------DYFSMVRIKCIQGKTDKAARIAEE 963 (1416)
T ss_pred HhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-------hhhhheeeEeeccCchHHHHHHHh
Confidence 0 022223223333334555666666555442 355555566666666666665554
No 138
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.0081 Score=48.72 Aligned_cols=134 Identities=10% Similarity=0.046 Sum_probs=98.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh-hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI-TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 181 (352)
|..+.-+....|+.+-|...++++ ...- |.+. .--.-..-+-..|++++|.++++.+.+.+.. +..++..-+-+
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L-~~~f--p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt--~~v~~KRKlAi 129 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQL-RDRF--PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPT--DTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHH-HHhC--CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcc--hhHHHHHHHHH
Confidence 777777888889999999999998 4332 4332 2111112244568899999999999887633 77777777777
Q ss_pred HHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchh
Q 042593 182 YAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWR 243 (352)
Q Consensus 182 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 243 (352)
.-..|+--+|++-+.+..+. ..|...|.-+...|...|++++|.-.++++.- +.|-...+
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll--~~P~n~l~ 190 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL--IQPFNPLY 190 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH--cCCCcHHH
Confidence 77788877888877776555 56889999999999999999999999999886 34444333
No 139
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.77 E-value=0.00064 Score=49.45 Aligned_cols=95 Identities=13% Similarity=0.035 Sum_probs=44.5
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHhcCCC-CCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCC----HhhHHHHHHH
Q 042593 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFN-AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN----LVSWTTIISG 214 (352)
Q Consensus 140 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~li~~ 214 (352)
......+.+.|++++|...++.+.+.... +.....+..+..++.+.|+++.|.+.|+.+....|+ ...+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 33444444555555555555555443211 001233444555555555555555555554433222 2334444455
Q ss_pred HHcCCCHHHHHHHHHHHHhc
Q 042593 215 FAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 215 ~~~~~~~~~a~~~~~~m~~~ 234 (352)
+.+.|+.++|...++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55555555555555555543
No 140
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.77 E-value=0.00066 Score=57.78 Aligned_cols=128 Identities=17% Similarity=0.116 Sum_probs=98.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHH-HHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA-IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 181 (352)
|-.+++..-+.+..+.|..+|.+..+...... ..|...... +...++.+.|..+|+...+.- .. +...|...++.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~--~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-~~-~~~~~~~Y~~~ 79 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTY--HVYVAYALMEYYCNKDPKRARKIFERGLKKF-PS-DPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-T--HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-TT--HHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-CC-CHHHHHHHHHH
Confidence 88889999999999999999999943222333 344443333 333567777999999998873 33 88899999999
Q ss_pred HHhhCChHHHHHHHHHhccCCCCH----hhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 182 YAKCGCIFSASKLFEDTSVDRKNL----VSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 182 ~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
+.+.|+.+.|..+|+.....-+.. ..|...+..=.+.|+.+.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999987764444 48999999999999999999999998874
No 141
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.76 E-value=0.012 Score=50.24 Aligned_cols=209 Identities=12% Similarity=0.037 Sum_probs=118.3
Q ss_pred ccHHHHHHHHHhcCCcchHHHHHHHHHHhCCC---C--chhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHH
Q 042593 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQ---S--HVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG 99 (352)
Q Consensus 25 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~ 99 (352)
..|......|-..|++++|.+.|......... + -...|.....+|-+. ++++|.+.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~------------------ 96 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIEC------------------ 96 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHH------------------
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHH------------------
Confidence 34556666666666666666666655432111 1 011222222222222 44444333
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhC-CChhhHHHHHHHHHhc----CCCCCchhh
Q 042593 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN-GEVRNCQLIHGYGEKR----GFNAFDIHV 174 (352)
Q Consensus 100 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~-~~~~~a~~~~~~~~~~----~~~~~~~~~ 174 (352)
|...+..|...|++..|-..+.++ ...|... |+++.|...|++..+. +-...-..+
T Consensus 97 ---~~~A~~~y~~~G~~~~aA~~~~~l----------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~ 157 (282)
T PF14938_consen 97 ---YEKAIEIYREAGRFSQAAKCLKEL----------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAEC 157 (282)
T ss_dssp ---HHHHHHHHHHCT-HHHHHHHHHHH----------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ---HHHHHHHHHhcCcHHHHHHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHH
Confidence 555556677777777776666665 3445555 7888888888877643 321112456
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHhccCC-------CCHh-hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhH
Q 042593 175 SNCLIDTYAKCGCIFSASKLFEDTSVDR-------KNLV-SWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGE 246 (352)
Q Consensus 175 ~~~li~~~~~~g~~~~a~~~~~~~~~~~-------~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ 246 (352)
+..+...+.+.|++++|.++|+++.... .++. .|-..+-++...|+...|...+++..... |
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~--~-------- 227 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD--P-------- 227 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS--T--------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--C--------
Confidence 7788899999999999999999875431 1222 23334456777899999999999987642 1
Q ss_pred hHHHHHHHHHHhcCCCC--ChhhHHHHHHHHHH--cCChhHHHHHHhcCCCC
Q 042593 247 EGLKFFDKMVEECEVLP--DIKHYGCLIDILER--AGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 247 ~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~ 294 (352)
++.. .......||.++-. ...+++|..-|+.+...
T Consensus 228 -------------~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 228 -------------SFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp -------------TSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred -------------CCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 2222 23455666776653 34566777777777654
No 142
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.76 E-value=0.0005 Score=47.17 Aligned_cols=89 Identities=16% Similarity=0.089 Sum_probs=40.0
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCC-CCHhhHHHHHHHHHcCCC
Q 042593 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR-KNLVSWTTIISGFAMHGM 220 (352)
Q Consensus 142 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~li~~~~~~~~ 220 (352)
+...+...|++++|...++...+.... +...+..+..++...|++++|.+.|+...... .+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPD--NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence 333344444444444444444433221 22334444444445555555555554443332 222344444445555555
Q ss_pred HHHHHHHHHHHH
Q 042593 221 GKEAVENFERMQ 232 (352)
Q Consensus 221 ~~~a~~~~~~m~ 232 (352)
+++|...+.+..
T Consensus 84 ~~~a~~~~~~~~ 95 (100)
T cd00189 84 YEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.76 E-value=0.0005 Score=50.02 Aligned_cols=99 Identities=14% Similarity=-0.000 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHhhCChHHHHHHHHHhccCCCC----HhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhH
Q 042593 173 HVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN----LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEG 248 (352)
Q Consensus 173 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a 248 (352)
.++-.+...+.+.|++++|.+.|+.+....|+ ...+..+..++.+.|++++|...++.+.... |
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p---------- 70 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--P---------- 70 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--C----------
Confidence 35567788888999999999999998765443 3466678888999999999999999988642 2
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 249 LKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 249 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
+.+.....+..+..++.+.|+.++|.+.++++...
T Consensus 71 -----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 71 -----------KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred -----------CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 11223456777888889999999999999988766
No 144
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.76 E-value=0.0046 Score=62.09 Aligned_cols=242 Identities=12% Similarity=0.010 Sum_probs=155.6
Q ss_pred cHHHHHHHHHhcCCcchHHHHHHHHHHhCC---CC--chhhHHHHHHHHHhcCChhHHHHHhccCCC-------CCchhH
Q 042593 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGF---QS--HVYVNTALGDMYVSLGFLKDSSKLFDELPE-------RNLVTW 93 (352)
Q Consensus 26 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------~~~~~~ 93 (352)
..+.+...+...|++++|...++......- .+ -..+...+...+...|++++|...+++... ++.. .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~-~ 571 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP-M 571 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc-H
Confidence 345566667789999999999988764321 11 123556677788899999999998887643 1111 1
Q ss_pred HHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhcc-CCCCC--hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCC
Q 042593 94 NVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE-YTEPS--EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF 170 (352)
Q Consensus 94 ~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 170 (352)
...+ +..+...+...|++++|...+.+..... ...+. ...+..+.......|+.++|...++..........
T Consensus 572 ~~~~-----~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~ 646 (903)
T PRK04841 572 HEFL-----LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGR 646 (903)
T ss_pred HHHH-----HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc
Confidence 1111 4445566777899999999988873221 11122 23455566677889999999999888865321110
Q ss_pred chhhH-----HHHHHHHHhhCChHHHHHHHHHhccCCC-CH----hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCc
Q 042593 171 DIHVS-----NCLIDTYAKCGCIFSASKLFEDTSVDRK-NL----VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240 (352)
Q Consensus 171 ~~~~~-----~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 240 (352)
....+ ...+..+...|+.+.|.+.+.......+ .. ..+..+..++...|+.++|...+++.....
T Consensus 647 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~----- 721 (903)
T PRK04841 647 YHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENA----- 721 (903)
T ss_pred ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----
Confidence 11111 1123455668999999999887654321 11 113456677889999999999999877631
Q ss_pred chhhhHhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 241 SWRIGEEGLKFFDKMVEECEVLP-DIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 241 ~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
... +..+ ...+...+..++.+.|+.++|...+.+....
T Consensus 722 ---------------~~~-g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 722 ---------------RSL-RLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred ---------------HHh-CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 011 3322 2345667788889999999999888877655
No 145
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.76 E-value=0.001 Score=64.34 Aligned_cols=228 Identities=11% Similarity=-0.039 Sum_probs=153.2
Q ss_pred CchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC
Q 042593 57 SHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134 (352)
Q Consensus 57 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p 134 (352)
.+...+..|+..|...+++++|.++.+...+ |+...+ |..+...+.+.++.+.+..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~---------yy~~G~l~~q~~~~~~~~lv------------ 87 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISA---------LYISGILSLSRRPLNDSNLL------------ 87 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceeh---------HHHHHHHHHhhcchhhhhhh------------
Confidence 3567899999999999999999999997665 443331 33333356666665444443
Q ss_pred ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCC-CCHhhHHHHHH
Q 042593 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR-KNLVSWTTIIS 213 (352)
Q Consensus 135 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~li~ 213 (352)
.++.......++..+..+.+.+...+- +...+-.+..+|-+.|+.++|..+++++.+.. .|+...|.+.-
T Consensus 88 ------~~l~~~~~~~~~~~ve~~~~~i~~~~~---~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY 158 (906)
T PRK14720 88 ------NLIDSFSQNLKWAIVEHICDKILLYGE---NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLAT 158 (906)
T ss_pred ------hhhhhcccccchhHHHHHHHHHHhhhh---hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 334444455566666666666666543 55678899999999999999999999988774 57899999999
Q ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCC
Q 042593 214 GFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPS 293 (352)
Q Consensus 214 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 293 (352)
.|... +.++|.+++.+.+..-+.- -.+..+.++|.++... .+-+...+-.+.+.....-...
T Consensus 159 ~~ae~-dL~KA~~m~~KAV~~~i~~----kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~~~~----------- 220 (906)
T PRK14720 159 SYEEE-DKEKAITYLKKAIYRFIKK----KQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGHREFT----------- 220 (906)
T ss_pred HHHHh-hHHHHHHHHHHHHHHHHhh----hcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhhhccc-----------
Confidence 99999 9999999999987751100 0167788888888874 2223333333333332221111
Q ss_pred CCCCchhhHHHHHHHHhcccccCcccccccchhhhhhHHHH
Q 042593 294 QITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAALYA 334 (352)
Q Consensus 294 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 334 (352)
.-..++-.+...|-...++.+++.+++..+...|.+-.+
T Consensus 221 --~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a 259 (906)
T PRK14720 221 --RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKA 259 (906)
T ss_pred --hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhh
Confidence 133445556666777777888888887777666655444
No 146
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.76 E-value=0.0013 Score=62.77 Aligned_cols=165 Identities=17% Similarity=0.095 Sum_probs=119.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhh
Q 042593 59 VYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138 (352)
Q Consensus 59 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t 138 (352)
...|..|...|+...+...|.+.|++..+-|..-+.+ +....+.|+...+++.|..+.-..-+......-...
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaea-------aaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~n 564 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEA-------AAASADTYAEESTWEEAFEICLRAAQKAPAFACKEN 564 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh-------HHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhh
Confidence 4678889999999889999999999988755554444 888999999999999999984443111111111122
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHH--HHHHHH
Q 042593 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT--IISGFA 216 (352)
Q Consensus 139 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--li~~~~ 216 (352)
|...--.+-+.++..++..-++......+. |...|..+..+|.++|++..|.++|.+...-.|+. +|.. ....-|
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~dPk--D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s-~y~~fk~A~~ec 641 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPK--DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS-KYGRFKEAVMEC 641 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCCch--hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh-HHHHHHHHHHHH
Confidence 333444456778888888888877766544 88999999999999999999999999876555643 2222 222357
Q ss_pred cCCCHHHHHHHHHHHHh
Q 042593 217 MHGMGKEAVENFERMQK 233 (352)
Q Consensus 217 ~~~~~~~a~~~~~~m~~ 233 (352)
..|++.+|...+.....
T Consensus 642 d~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 642 DNGKYKEALDALGLIIY 658 (1238)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 78889999888887654
No 147
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.74 E-value=0.0019 Score=59.81 Aligned_cols=169 Identities=16% Similarity=0.134 Sum_probs=116.3
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHH
Q 042593 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDG 109 (352)
Q Consensus 30 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~ 109 (352)
.+.+....+.|..|+.+++.+.... .-..-|..+.+.|+..|+++.|+++|-+.. . ++-.|..
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~----------~~dai~m 800 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD-----L----------FKDAIDM 800 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc-----h----------hHHHHHH
Confidence 3445556677888888888776654 234457778888899999999999987753 2 6667788
Q ss_pred HHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChH
Q 042593 110 YSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189 (352)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 189 (352)
|.++|+|+.|.++-.+- .|.......|.+-..-+-+.|++.+|+++|-.+ |.+ ...|..|-+.|..+
T Consensus 801 y~k~~kw~da~kla~e~---~~~e~t~~~yiakaedldehgkf~eaeqlyiti---~~p-------~~aiqmydk~~~~d 867 (1636)
T KOG3616|consen 801 YGKAGKWEDAFKLAEEC---HGPEATISLYIAKAEDLDEHGKFAEAEQLYITI---GEP-------DKAIQMYDKHGLDD 867 (1636)
T ss_pred HhccccHHHHHHHHHHh---cCchhHHHHHHHhHHhHHhhcchhhhhheeEEc---cCc-------hHHHHHHHhhCcch
Confidence 89999999888875554 444445556777777777888888888777532 221 25577888888888
Q ss_pred HHHHHHHHhccCCCCH--hhHHHHHHHHHcCCCHHHHHHHHHHH
Q 042593 190 SASKLFEDTSVDRKNL--VSWTTIISGFAMHGMGKEAVENFERM 231 (352)
Q Consensus 190 ~a~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m 231 (352)
+.+++.++- .|+. .|--.+..-|-..|+.++|+.-|-+.
T Consensus 868 dmirlv~k~---h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 868 DMIRLVEKH---HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHHHHHh---ChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 888887765 3332 34444555666777777777766553
No 148
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.72 E-value=0.0031 Score=59.64 Aligned_cols=207 Identities=14% Similarity=0.081 Sum_probs=128.7
Q ss_pred HhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHH--HHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCCh
Q 042593 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPA--IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188 (352)
Q Consensus 111 ~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 188 (352)
...+++.+|++...++.++. |+. .|..++.+ +.+.|+.++|..+++.....+.. |..+...+-.+|...|+.
T Consensus 20 ld~~qfkkal~~~~kllkk~---Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~--D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH---PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT--DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC---CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC--chHHHHHHHHHHHHHhhh
Confidence 45678888888888885644 332 23444444 45889999999888887666554 788888999999999999
Q ss_pred HHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh---------------------hHh
Q 042593 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI---------------------GEE 247 (352)
Q Consensus 189 ~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---------------------~~~ 247 (352)
++|..+|++.....|+......+..+|.+.+.+.+-.+.--+|-+. +.-+..+++ ...
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 9999999998877888888888888888888776544433333331 222222222 555
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHH-hcCCCC--CCCchhhHHHHHHHHhcccccCcccccccc
Q 042593 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA-SGIPSQ--ITNVVVWRTGFLRLLINSYFFSPITLNSQR 324 (352)
Q Consensus 248 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 324 (352)
|.+.++.+.+..|.--+..-.......+...|++++|++++ ....+. +-+...-+--+.-+...+++.+-.++..+-
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 66667777666321112222223344556778888888887 233222 223333333444455555555544444443
No 149
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.72 E-value=0.0056 Score=55.98 Aligned_cols=191 Identities=12% Similarity=-0.008 Sum_probs=133.8
Q ss_pred ccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCC---CchhHHHHHHHHH
Q 042593 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPER---NLVTWNVIITGLV 101 (352)
Q Consensus 25 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~i~~~~ 101 (352)
..|..+++ |-..+++...+++.+...+ +.+-...|.....-.++..|+-++|......-... +.++
T Consensus 9 ~lF~~~lk-~yE~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vC--------- 77 (700)
T KOG1156|consen 9 ALFRRALK-CYETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVC--------- 77 (700)
T ss_pred HHHHHHHH-HHHHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchh---------
Confidence 34444554 4466788888888888877 44556677766666777889999998888776653 4455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHH
Q 042593 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS-EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180 (352)
Q Consensus 102 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 180 (352)
|..+.-.+-...++++|++.|....+ +.|| ...+.-+----++.++++.......++.+.... ....|..+..
T Consensus 78 -wHv~gl~~R~dK~Y~eaiKcy~nAl~---~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~--~ra~w~~~Av 151 (700)
T KOG1156|consen 78 -WHVLGLLQRSDKKYDEAIKCYRNALK---IEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS--QRASWIGFAV 151 (700)
T ss_pred -HHHHHHHHhhhhhHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--hHHHHHHHHH
Confidence 77777777778899999999998844 3454 345665555567778888888888877776443 5667788888
Q ss_pred HHHhhCChHHHHHHHHHhccC---CCCHhhHHHHHH------HHHcCCCHHHHHHHHHHHH
Q 042593 181 TYAKCGCIFSASKLFEDTSVD---RKNLVSWTTIIS------GFAMHGMGKEAVENFERMQ 232 (352)
Q Consensus 181 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~li~------~~~~~~~~~~a~~~~~~m~ 232 (352)
++--.|+...|..+.++..+. .|+...|..... .....|..++|.+-+..-.
T Consensus 152 s~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e 212 (700)
T KOG1156|consen 152 AQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE 212 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh
Confidence 888899999999998887655 366655554332 2455666666666665543
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.72 E-value=9.4e-05 Score=50.36 Aligned_cols=82 Identities=13% Similarity=0.157 Sum_probs=44.3
Q ss_pred cCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHH
Q 042593 113 MNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSAS 192 (352)
Q Consensus 113 ~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 192 (352)
.|+++.|+.+++++.......|+...+..+..++.+.|++++|..+++. .+.+.. +....-.+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~--~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS--NPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC--HHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC--CHHHHHHHHHHHHHhCCHHHHH
Confidence 4566677777777633322122333444466666777777777777766 222222 3333334466666677777776
Q ss_pred HHHHH
Q 042593 193 KLFED 197 (352)
Q Consensus 193 ~~~~~ 197 (352)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
No 151
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.71 E-value=0.00057 Score=46.85 Aligned_cols=97 Identities=13% Similarity=0.063 Sum_probs=78.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
|..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|...++...+.... +..++..+..++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD--NAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--chhHHHHHHHHH
Confidence 6667778888999999999999984422 223467788888899999999999999998887644 557888899999
Q ss_pred HhhCChHHHHHHHHHhccCCC
Q 042593 183 AKCGCIFSASKLFEDTSVDRK 203 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~~~ 203 (352)
...|+.+.|...+.......|
T Consensus 79 ~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 79 YKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHhHHHHHHHHHHHHccCC
Confidence 999999999999988754433
No 152
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.69 E-value=0.00058 Score=60.67 Aligned_cols=130 Identities=12% Similarity=0.079 Sum_probs=101.9
Q ss_pred hHHHHHHhhccCCCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHh--CCCCchhhHHHHHHHHHhcCChhHHHHH
Q 042593 4 YKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKV--GFQSHVYVNTALGDMYVSLGFLKDSSKL 81 (352)
Q Consensus 4 ~~~M~~~~~~~~g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (352)
+..|.+-+. .+..- +......+++.+....+++.+.+++-..... ....-+.|..++|+.|.+.|..+.+..+
T Consensus 51 ~~~l~~k~~--~~~~v---S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~ 125 (429)
T PF10037_consen 51 YSELDKKFE--RKKPV---SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLEL 125 (429)
T ss_pred HHHHHHHHh--cCCCC---cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHH
Confidence 455665444 23333 6677888889999888999999888877754 2223345667999999999999999999
Q ss_pred hccCCC----CCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhC
Q 042593 82 FDELPE----RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149 (352)
Q Consensus 82 ~~~m~~----~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~ 149 (352)
++.=.+ ||..+ +|.||+.+.+.|++..|.++..+| .....-.+..|+...+.+|.+-
T Consensus 126 L~n~~~yGiF~D~~s----------~n~Lmd~fl~~~~~~~A~~V~~~~-~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 126 LKNRLQYGIFPDNFS----------FNLLMDHFLKKGNYKSAAKVATEM-MLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HhChhhcccCCChhh----------HHHHHHHHhhcccHHHHHHHHHHH-HHhhccCCchHHHHHHHHHHHh
Confidence 988655 88888 999999999999999999999999 5555557778888888887766
No 153
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.69 E-value=0.0068 Score=52.33 Aligned_cols=110 Identities=15% Similarity=0.051 Sum_probs=79.9
Q ss_pred hHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHH
Q 042593 174 VSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFD 253 (352)
Q Consensus 174 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~ 253 (352)
+.+..|.-+...|+...|.++-.+. .-|+-.-|...+.+++..++|++-..+... ++
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F--kv~dkrfw~lki~aLa~~~~w~eL~~fa~s-kK-------------------- 235 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF--KVPDKRFWWLKIKALAENKDWDELEKFAKS-KK-------------------- 235 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-CC--------------------
Confidence 4455566777788888888888777 568888888888899998888887765432 11
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHHHhcccccCcccccccc
Q 042593 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQR 324 (352)
Q Consensus 254 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 324 (352)
.+.-|...+.+|.+.|+..+|...+.++. +..-+..|++.|++.+|.+...+.
T Consensus 236 ----------sPIGyepFv~~~~~~~~~~eA~~yI~k~~--------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 236 ----------SPIGYEPFVEACLKYGNKKEASKYIPKIP--------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred ----------CCCChHHHHHHHHHCCCHHHHHHHHHhCC--------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 23456667788888888888888877743 255677778888888887765554
No 154
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.67 E-value=0.00029 Score=59.96 Aligned_cols=146 Identities=14% Similarity=0.044 Sum_probs=101.1
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHh-hCChHHHHHHHHHhccC-CCCHhhHHHHHHH
Q 042593 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK-CGCIFSASKLFEDTSVD-RKNLVSWTTIISG 214 (352)
Q Consensus 137 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~ 214 (352)
.+|..+++...+.+..+.|..+|.+..+.+.. +.++|-.....-.+ .++.+.|.++|+...+. ..+...|..-+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46888889999999999999999999866543 45555555555333 56677799999987665 6677888888999
Q ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCChhHHHHHHhcCCC
Q 042593 215 FAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLP-DIKHYGCLIDILERAGRLEQAEEVASGIPS 293 (352)
Q Consensus 215 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 293 (352)
+...++.+.|..+|++.... +.++ . ....|...++.=.+.|+.+.+.++.+++..
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~-----------------------~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKE-----------------------KQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCH-----------------------HHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCch-----------------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999998864 1111 1 234777778878888888888888777655
Q ss_pred CCCCchhhHHHHHHH
Q 042593 294 QITNVVVWRTGFLRL 308 (352)
Q Consensus 294 ~~~~~~~~~~li~~~ 308 (352)
..|+......++.-|
T Consensus 136 ~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 136 LFPEDNSLELFSDRY 150 (280)
T ss_dssp HTTTS-HHHHHHCCT
T ss_pred HhhhhhHHHHHHHHh
Confidence 434444444444433
No 155
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.63 E-value=0.055 Score=51.65 Aligned_cols=191 Identities=13% Similarity=0.073 Sum_probs=116.7
Q ss_pred HHHHHHHHH--hcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHHHHh
Q 042593 27 YSFLIRTCV--TLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGLVK 102 (352)
Q Consensus 27 ~~~ll~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~~~~ 102 (352)
|..+++++. +.|+.++|..+++.....+.. |..|...+-.+|...++.++|..+|++..+ |+...
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eel---------- 112 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEEL---------- 112 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHH----------
Confidence 666666655 678888888888777665533 778888888888888888888888888876 44333
Q ss_pred HHHHHHHHHhcCCHHH----HHHHHHHhHhccCCCCChhhHHHHHHHHHhCC----------ChhhHHHHHHHHHhcC-C
Q 042593 103 WTGIIDGYSRMNRSNE----ALALFRRMAACEYTEPSEITILAVLPAIWKNG----------EVRNCQLIHGYGEKRG-F 167 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~----------~~~~a~~~~~~~~~~~-~ 167 (352)
...+..+|++.+++.+ |+++++.. +-+.+.|-+++....... -..-|.+..+.+.+.+ .
T Consensus 113 l~~lFmayvR~~~yk~qQkaa~~LyK~~------pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk 186 (932)
T KOG2053|consen 113 LYHLFMAYVREKSYKKQQKAALQLYKNF------PKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGK 186 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC------CcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCc
Confidence 4445556666665544 44444422 223444444444443321 1233555666555444 2
Q ss_pred CCCchhhHHHHHHHHHhhCChHHHHHHHHH-hccC--CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 042593 168 NAFDIHVSNCLIDTYAKCGCIFSASKLFED-TSVD--RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235 (352)
Q Consensus 168 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 235 (352)
.. +..-.-.-...+...|++++|.+++.. .-.. ..+...-+.-+..+...++|.+..++-.++...|
T Consensus 187 ~~-s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 187 IE-SEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred cc-hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 21 333333444556677888888888843 2222 2244444556677778888888888888887765
No 156
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.62 E-value=0.0045 Score=48.54 Aligned_cols=129 Identities=12% Similarity=0.035 Sum_probs=86.1
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCc-hhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHH
Q 042593 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD-IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISG 214 (352)
Q Consensus 137 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~ 214 (352)
..+..+...+...|++++|...+++..+....+++ ...+..+..++.+.|++++|...+++.....| +...+..+...
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 45777788888899999999999998876544312 46788889999999999999999998776655 56667777777
Q ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC
Q 042593 215 FAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGR 280 (352)
Q Consensus 215 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 280 (352)
+...|+...+..-++..... .++|.+++++.... ++..|..++..+...|+
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~----------~~~A~~~~~~a~~~-----~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEAL----------FDKAAEYWKQAIRL-----APNNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHcCChHhHhhCHHHHHHH----------HHHHHHHHHHHHhh-----CchhHHHHHHHHHhcCc
Confidence 77777655444433332221 34455555555543 33335555555555544
No 157
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.62 E-value=0.0043 Score=57.79 Aligned_cols=240 Identities=14% Similarity=0.064 Sum_probs=152.1
Q ss_pred HHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC---CCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhH
Q 042593 51 SKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE---RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA 127 (352)
Q Consensus 51 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 127 (352)
....+..+...|..|.-+...+|+++.+.+.|++... ..... |+.+-..|...|.-..|..+.+.-.
T Consensus 315 r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~----------w~~~als~saag~~s~Av~ll~~~~ 384 (799)
T KOG4162|consen 315 RLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHER----------WYQLALSYSAAGSDSKAVNLLRESL 384 (799)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHH----------HHHHHHHHHHhccchHHHHHHHhhc
Confidence 3345667888999999999999999999999998764 22233 8888889999999999999888763
Q ss_pred hccCCCCChh-hHHHHHHHHH-hCCChhhHHHHHHHHHhc--CCC-CCchhhHHHHHHHHHhh-----------CChHHH
Q 042593 128 ACEYTEPSEI-TILAVLPAIW-KNGEVRNCQLIHGYGEKR--GFN-AFDIHVSNCLIDTYAKC-----------GCIFSA 191 (352)
Q Consensus 128 ~~~~~~p~~~-t~~~ll~~~~-~~~~~~~a~~~~~~~~~~--~~~-~~~~~~~~~li~~~~~~-----------g~~~~a 191 (352)
... ..|+.. .+...-..|. +.+..+++..+-.+.... +.. ...+..|..+.-+|... ....++
T Consensus 385 ~~~-~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ks 463 (799)
T KOG4162|consen 385 KKS-EQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKS 463 (799)
T ss_pred ccc-cCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHH
Confidence 322 234433 3333333343 457777777777666651 111 00234455555555422 234567
Q ss_pred HHHHHHhccC---CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhH
Q 042593 192 SKLFEDTSVD---RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHY 268 (352)
Q Consensus 192 ~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~ 268 (352)
.+.+++..+. .|++.-|-++ -|+..++++.|.+..++..+.+ -.-+...|
T Consensus 464 lqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~-------------------------~~~~~~~w 516 (799)
T KOG4162|consen 464 LQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALN-------------------------RGDSAKAW 516 (799)
T ss_pred HHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhc-------------------------CCccHHHH
Confidence 7777776544 3444444333 3667778999999988888752 23367788
Q ss_pred HHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCcccccccchhhh
Q 042593 269 GCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFF 328 (352)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 328 (352)
..|.-.+...+++.+|+.+.+..... +.|...-..-+.--..-++.++|+....+++-.+
T Consensus 517 hLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~w 577 (799)
T KOG4162|consen 517 HLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALW 577 (799)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHH
Confidence 88888888899999998887765444 2222222222222334666666666666665433
No 158
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.57 E-value=0.00092 Score=46.97 Aligned_cols=80 Identities=10% Similarity=0.170 Sum_probs=64.6
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhcCC-CCCchhhHHHHHHHHHhhC--------ChHHHHHHHHHhccC--CCCHh
Q 042593 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGF-NAFDIHVSNCLIDTYAKCG--------CIFSASKLFEDTSVD--RKNLV 206 (352)
Q Consensus 138 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~--~~~~~ 206 (352)
|-...|..+...+++.....+|+.++..|+ .| +..+|+.++.+.++.. ++-..+.+++.|... +|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lP-sv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLP-SVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 344566777777999999999999999999 66 9999999999988764 344567788887655 79999
Q ss_pred hHHHHHHHHHcC
Q 042593 207 SWTTIISGFAMH 218 (352)
Q Consensus 207 ~~~~li~~~~~~ 218 (352)
+|+.++..+.+.
T Consensus 106 tYnivl~~Llkg 117 (120)
T PF08579_consen 106 TYNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHHh
Confidence 999999887653
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.55 E-value=0.00024 Score=48.34 Aligned_cols=81 Identities=16% Similarity=0.072 Sum_probs=62.3
Q ss_pred CCChhhHHHHHHHHHhcCCC-CCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHH
Q 042593 149 NGEVRNCQLIHGYGEKRGFN-AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVEN 227 (352)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 227 (352)
.|+++.|..+++.+.+.... + +...+-.+..+|.+.|++++|.++++.......+....-.+..+|.+.|++++|.+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-NSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-HHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh-hHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57899999999999988653 3 445555689999999999999999988322233445555668899999999999999
Q ss_pred HHH
Q 042593 228 FER 230 (352)
Q Consensus 228 ~~~ 230 (352)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 976
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.55 E-value=0.0053 Score=48.13 Aligned_cols=84 Identities=13% Similarity=-0.052 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPS-EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 181 (352)
|..+...+...|++++|...|++......-.++ ...+..+...+.+.|++++|...+++..+.... +...+..+..+
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~ 115 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK--QPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHH
Confidence 777888899999999999999998443221222 357888899999999999999999999886543 66777778888
Q ss_pred HHhhCCh
Q 042593 182 YAKCGCI 188 (352)
Q Consensus 182 ~~~~g~~ 188 (352)
+...|+.
T Consensus 116 ~~~~g~~ 122 (172)
T PRK02603 116 YHKRGEK 122 (172)
T ss_pred HHHcCCh
Confidence 8887774
No 161
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.52 E-value=0.00045 Score=44.70 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=42.8
Q ss_pred HhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHH
Q 042593 147 WKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTI 211 (352)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l 211 (352)
...|++++|...++.+.+.... +..++..+..+|.+.|++++|.++++.+....|+-..|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 3567777777777777766544 66666677777777777777777777776666665444444
No 162
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.018 Score=51.57 Aligned_cols=190 Identities=11% Similarity=0.052 Sum_probs=119.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCch---hHHHHHHHHHhH
Q 042593 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLV---TWNVIITGLVKW 103 (352)
Q Consensus 27 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---~~~~~i~~~~~~ 103 (352)
...+.++..+..++..+++-++...+.. -+..-++....+|...|...++...-+.-.+.+.. .++-+-.+ +
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~---~ 301 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKA---L 301 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHH---H
Confidence 5667788888889999999998888766 56666788888899988888877776665543322 22222211 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q 042593 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183 (352)
Q Consensus 104 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 183 (352)
..+-++|.+.++++.|...|.+.+. ....|+. ..+....+++....+...-.+... ..-...-.+.+.
T Consensus 302 ~r~g~a~~k~~~~~~ai~~~~kaLt-e~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~--A~e~r~kGne~F 369 (539)
T KOG0548|consen 302 ARLGNAYTKREDYEGAIKYYQKALT-EHRTPDL---------LSKLKEAEKALKEAERKAYINPEK--AEEEREKGNEAF 369 (539)
T ss_pred HHhhhhhhhHHhHHHHHHHHHHHhh-hhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH--HHHHHHHHHHHH
Confidence 3455577778889999999888622 2222322 223333444444444333333221 222223355666
Q ss_pred hhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 184 KCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 184 ~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
+.|++..|.+.+.++....| |...|....-+|.+.|.+..|..--+.-.+
T Consensus 370 k~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 370 KKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred hccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777777777777665544 567777777777777777777766555554
No 163
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.43 E-value=0.0071 Score=45.72 Aligned_cols=95 Identities=5% Similarity=-0.129 Sum_probs=76.9
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCC-CCHhhHHHHHHHHH
Q 042593 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR-KNLVSWTTIISGFA 216 (352)
Q Consensus 138 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~li~~~~ 216 (352)
..-.+..-+...|++++|..+|+.+...... +..-|-.|.-++-..|++++|+..|....... -|+..+-.+-.++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~--~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW--SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4445566677889999999999988887654 67777888888899999999999998865554 46778888888999
Q ss_pred cCCCHHHHHHHHHHHHhc
Q 042593 217 MHGMGKEAVENFERMQKV 234 (352)
Q Consensus 217 ~~~~~~~a~~~~~~m~~~ 234 (352)
..|+.+.|.+.|+..+..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999987764
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.41 E-value=0.0092 Score=46.58 Aligned_cols=97 Identities=8% Similarity=-0.087 Sum_probs=70.5
Q ss_pred hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCC-chhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHH
Q 042593 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF-DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIIS 213 (352)
Q Consensus 136 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~ 213 (352)
...+..+...+...|++++|...++........+. ...++..+..++...|+.++|.+.++......| ...+++.+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 34567777778888999999999998876643321 235788888899999999999999988765544 4555666666
Q ss_pred HHH-------cCCCHHHHHHHHHHHH
Q 042593 214 GFA-------MHGMGKEAVENFERMQ 232 (352)
Q Consensus 214 ~~~-------~~~~~~~a~~~~~~m~ 232 (352)
.+. ..|++++|...+++-.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 666 7778777776666543
No 165
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.41 E-value=0.032 Score=43.23 Aligned_cols=129 Identities=13% Similarity=0.016 Sum_probs=97.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
-..|..+....|+..+|...|++. -..-..-|......+.++....++...|...++.+-+.....-++..--.+.+.|
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qa-lsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQA-LSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHH-hccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 667888999999999999999998 6666667788888999999999999999999999887764322455566788999
Q ss_pred HhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042593 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQ 232 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 232 (352)
...|+..+|+.-|+...+..|+...----..-+.++|+.+++..-+.++.
T Consensus 171 aa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 171 AAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 99999999999999887776655332222233566776666655444443
No 166
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.40 E-value=0.023 Score=43.06 Aligned_cols=91 Identities=9% Similarity=0.019 Sum_probs=63.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh-hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE-ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 181 (352)
...+...+...|++++|.++|+-+.. +.|.. .-|..+.-++-..|++++|...|.......+. ++..+-.+..+
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~---~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d--dp~~~~~ag~c 112 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTI---YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID--APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CchHHHHHHHH
Confidence 44455556677888888888877733 23433 35666666777778888888888877776643 67777777788
Q ss_pred HHhhCChHHHHHHHHHh
Q 042593 182 YAKCGCIFSASKLFEDT 198 (352)
Q Consensus 182 ~~~~g~~~~a~~~~~~~ 198 (352)
+...|+.+.|.+.|+..
T Consensus 113 ~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 113 YLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 88888888888877765
No 167
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.38 E-value=0.0012 Score=52.23 Aligned_cols=82 Identities=13% Similarity=0.097 Sum_probs=48.1
Q ss_pred HHHHHHHHHh-----cCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCC----------------ChhhHHHHHHH
Q 042593 103 WTGIIDGYSR-----MNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG----------------EVRNCQLIHGY 161 (352)
Q Consensus 103 ~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~----------------~~~~a~~~~~~ 161 (352)
|..++..|.+ .|..+-...-+..| .+.|+.-|..+|+.||+.+=+.. +-+-|.+++++
T Consensus 50 F~~~V~~f~~~~~~RRGHVeFI~aAL~~M-~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~q 128 (228)
T PF06239_consen 50 FLEAVDIFKQRDVRRRGHVEFIYAALKKM-DEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQ 128 (228)
T ss_pred HHHHHHHHHhcCCCCcChHHHHHHHHHHH-HHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHH
Confidence 4444444433 35555555666667 66777777777777777665422 22445566666
Q ss_pred HHhcCCCCCchhhHHHHHHHHHhhC
Q 042593 162 GEKRGFNAFDIHVSNCLIDTYAKCG 186 (352)
Q Consensus 162 ~~~~~~~~~~~~~~~~li~~~~~~g 186 (352)
|+..|+-| |..++..+++.+++.+
T Consensus 129 ME~~gV~P-d~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 129 MENNGVMP-DKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHcCCCC-cHHHHHHHHHHhcccc
Confidence 66666666 6666666666665544
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.37 E-value=0.0058 Score=47.71 Aligned_cols=64 Identities=9% Similarity=-0.122 Sum_probs=53.5
Q ss_pred chhhHHHHHHHHHhhCChHHHHHHHHHhccCCCC----HhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN----LVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
....|..+...+...|++++|...|+......|+ ..+|..+...+...|++++|...+++..+.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667788888899999999999999998644332 357888999999999999999999998863
No 169
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.37 E-value=0.0039 Score=55.04 Aligned_cols=102 Identities=10% Similarity=-0.105 Sum_probs=81.6
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhC
Q 042593 107 IDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG 186 (352)
Q Consensus 107 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 186 (352)
...+...|++++|++.|++..... +-+...|..+..++.+.|++++|...++.+.+.... +...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~--~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS--LAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHhC
Confidence 455677899999999999994432 134567888889999999999999999999887644 7788889999999999
Q ss_pred ChHHHHHHHHHhccCCCCHhhHHHHH
Q 042593 187 CIFSASKLFEDTSVDRKNLVSWTTII 212 (352)
Q Consensus 187 ~~~~a~~~~~~~~~~~~~~~~~~~li 212 (352)
++++|...|++.....|+-......+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999877766544444433
No 170
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.35 E-value=0.061 Score=44.70 Aligned_cols=58 Identities=17% Similarity=0.133 Sum_probs=41.8
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcC
Q 042593 212 ISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291 (352)
Q Consensus 212 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 291 (352)
..-|.+.|.+..|..-++.+.+.= | +.+........++.+|.+.|..++|..+...+
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Y--p---------------------~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDY--P---------------------DTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHC--C---------------------CCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344777777877777777777631 1 33445667778999999999999998877654
Q ss_pred C
Q 042593 292 P 292 (352)
Q Consensus 292 ~ 292 (352)
.
T Consensus 239 ~ 239 (243)
T PRK10866 239 A 239 (243)
T ss_pred h
Confidence 3
No 171
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.31 E-value=0.026 Score=49.71 Aligned_cols=136 Identities=16% Similarity=0.134 Sum_probs=87.2
Q ss_pred chhhHHHHHHHHHhhCChHHHHHHHHHhccC---CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh---
Q 042593 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVD---RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI--- 244 (352)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--- 244 (352)
-..+|-..|++-.+...++.|..+|-+..+. .+++..++++|..++. |+..-|..+|+-=... -||...|.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 4567778888888888888888888887665 5788888888887665 5677788887753321 24444443
Q ss_pred ---------hHhHHHHHHHHHHhcCCCCC--hhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHHHhc
Q 042593 245 ---------GEEGLKFFDKMVEECEVLPD--IKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLIN 311 (352)
Q Consensus 245 ---------~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~ 311 (352)
-..|..+|+.-+.+ +.-+ ...|..+|+.-.+.|++..+..+-++|...-|...+-..+...|...
T Consensus 473 l~fLi~inde~naraLFetsv~r--~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik 548 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER--LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIK 548 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH--HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhh
Confidence 45566666644432 2222 45677777777788888777666666554434444444444444433
No 172
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.26 E-value=0.033 Score=50.19 Aligned_cols=128 Identities=12% Similarity=0.044 Sum_probs=102.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEP-SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 181 (352)
|-..++.--+..-+..|..+|.+. ++.+..+ ++...++++.-+|. +|.+-|.++|+.-.+.-.. ++.--...+..
T Consensus 369 ~~~~mn~irR~eGlkaaR~iF~ka-R~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d--~p~yv~~Yldf 444 (656)
T KOG1914|consen 369 YCQYMNFIRRAEGLKAARKIFKKA-REDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGD--SPEYVLKYLDF 444 (656)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHH-hhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCC--ChHHHHHHHHH
Confidence 777788888888899999999999 6666666 67788888887775 7889999999876554222 34445677888
Q ss_pred HHhhCChHHHHHHHHHhccC--CC--CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 182 YAKCGCIFSASKLFEDTSVD--RK--NLVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 182 ~~~~g~~~~a~~~~~~~~~~--~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
+...++-..|..+|+..... .| ....|..+|+.=..-|+...+.++-+++...
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 99999999999999988655 33 4588999999999999999999998887653
No 173
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.24 E-value=0.025 Score=46.96 Aligned_cols=57 Identities=11% Similarity=0.109 Sum_probs=45.6
Q ss_pred HHHHHHHhhCChHHHHHHHHHhccCCCC----HhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 177 CLIDTYAKCGCIFSASKLFEDTSVDRKN----LVSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 177 ~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
.+.+.|.+.|.+..|..-|+.+...-|+ ......++.+|...|..++|.++...+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 4556688999999999999998877554 35566888999999999999988776543
No 174
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.22 E-value=0.0035 Score=49.74 Aligned_cols=101 Identities=16% Similarity=0.159 Sum_probs=72.5
Q ss_pred chhhHHHHHHHHHhh-----CChHHHHHHHHHhccC--CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchh
Q 042593 171 DIHVSNCLIDTYAKC-----GCIFSASKLFEDTSVD--RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWR 243 (352)
Q Consensus 171 ~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 243 (352)
+..+|..+++.|.+. |.++-....+..|.+. ..|..+|+.|++.+=+. .+. -..+|+.+--. ...
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg-~fv-p~n~fQ~~F~h------yp~ 117 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKG-KFV-PRNFFQAEFMH------YPR 117 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCC-Ccc-cccHHHHHhcc------CcH
Confidence 788899999998754 6777777777777655 67999999999988763 322 22222222210 000
Q ss_pred hhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC
Q 042593 244 IGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGR 280 (352)
Q Consensus 244 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 280 (352)
--+-|.+++++|... |+.||..++..|++.+++.+.
T Consensus 118 Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 118 QQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 056678888888888 999999999999999988775
No 175
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.21 E-value=0.0061 Score=53.84 Aligned_cols=91 Identities=7% Similarity=-0.113 Sum_probs=79.8
Q ss_pred HHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCH
Q 042593 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMG 221 (352)
Q Consensus 143 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~ 221 (352)
...+...|++++|...+++..+.... +...|..+..+|.+.|++++|+..++......| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~--~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN--NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 45567889999999999999987654 788899999999999999999999999876655 678889999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 042593 222 KEAVENFERMQKVG 235 (352)
Q Consensus 222 ~~a~~~~~~m~~~~ 235 (352)
++|...|++..+..
T Consensus 87 ~eA~~~~~~al~l~ 100 (356)
T PLN03088 87 QTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998743
No 176
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.17 E-value=0.0014 Score=41.89 Aligned_cols=54 Identities=20% Similarity=0.177 Sum_probs=28.2
Q ss_pred HHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 180 DTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 180 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
..+.+.|++++|.+.|+.+.+..| +...+..+..++...|++++|...|++..+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555555555554433 344455555555555555555555555544
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.16 E-value=0.02 Score=53.04 Aligned_cols=130 Identities=9% Similarity=-0.043 Sum_probs=88.1
Q ss_pred HHHHHHHHHhc-----CCHHHHHHHHHHhHhccCCCCCh-hhHHHHHHHHHhCC--------ChhhHHHHHHHHHhcCCC
Q 042593 103 WTGIIDGYSRM-----NRSNEALALFRRMAACEYTEPSE-ITILAVLPAIWKNG--------EVRNCQLIHGYGEKRGFN 168 (352)
Q Consensus 103 ~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~p~~-~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~ 168 (352)
|...+.+.... ++...|..+|++..+ ..|+- ..|..+..++.... ++..+.+..+........
T Consensus 340 y~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~ 416 (517)
T PRK10153 340 LTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL 416 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccC
Confidence 55555554332 247799999999855 34664 34444433333221 122333333333333223
Q ss_pred CCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 042593 169 AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235 (352)
Q Consensus 169 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 235 (352)
+.+...|.++.-.....|++++|...+++.....|+...|..+...+...|+.++|.+.+++.....
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3256777777666777899999999999988778899999999999999999999999999988743
No 178
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.14 E-value=0.13 Score=43.83 Aligned_cols=263 Identities=10% Similarity=0.009 Sum_probs=182.0
Q ss_pred CcccHHHHH---HHHHhcCCcchHHHHHHHHHHhCCCCchhh-HHHHHHHHHhcCChhHHHHHhccCCCCCc--------
Q 042593 23 DSFTYSFLI---RTCVTLSYPNLGTQLHAVFSKVGFQSHVYV-NTALGDMYVSLGFLKDSSKLFDELPERNL-------- 90 (352)
Q Consensus 23 ~~~~~~~ll---~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~-------- 90 (352)
|+..|-++. ..|...|+-..|+.-++...+. +||-.. -.--...+.+.|.++.|+.=|+.+.+.++
T Consensus 68 dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~ea 145 (504)
T KOG0624|consen 68 DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEA 145 (504)
T ss_pred CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHH
Confidence 555555554 5677888888888777777664 466432 22234466799999999999999875222
Q ss_pred hhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCC
Q 042593 91 VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF 170 (352)
Q Consensus 91 ~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 170 (352)
..-.+++.-....-..+..+...||...|+.....++.-. +.|...|..-..+|...|+...|..=++...+..-.
T Consensus 146 qskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-- 221 (504)
T KOG0624|consen 146 QSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-- 221 (504)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC--cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc--
Confidence 1122222222123445667778899999999999884421 346677888889999999999998877777665544
Q ss_pred chhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHh----hHHHH---------HHHHHcCCCHHHHHHHHHHHHhcCCC
Q 042593 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLV----SWTTI---------ISGFAMHGMGKEAVENFERMQKVGLK 237 (352)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~l---------i~~~~~~~~~~~a~~~~~~m~~~~~~ 237 (352)
+...+-.+-..+-..|+.+.++...++..+..||-. .|-.| +......++|.++.+..+...+....
T Consensus 222 nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~ 301 (504)
T KOG0624|consen 222 NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE 301 (504)
T ss_pred chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc
Confidence 556666778888999999999999999887766542 22221 23356778899999999888776544
Q ss_pred CCcchhh--------------hHhHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 238 PNRSWRI--------------GEEGLKFFDKMVEECEVLPD-IKHYGCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 238 p~~~~~~--------------~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
.....+. ..+|++.-.+... +.|| +.++.--..+|.-...++.|..-|+...+.
T Consensus 302 ~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~---~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 302 ETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD---IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred ccceeeeeeheeeecccccCCHHHHHHHHHHHHh---cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 3333333 6667766666664 4554 778888888888888899998888877766
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.10 E-value=0.021 Score=52.90 Aligned_cols=140 Identities=9% Similarity=-0.099 Sum_probs=88.8
Q ss_pred CCChhhHHHHHHHHHhCC-----ChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhC--------ChHHHHHHHHHhc
Q 042593 133 EPSEITILAVLPAIWKNG-----EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG--------CIFSASKLFEDTS 199 (352)
Q Consensus 133 ~p~~~t~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~ 199 (352)
+.|...|...+++..... +.+.|..++++..+.... ....+..+..++.... +++.+.+..+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~--~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD--FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 455667887777754432 256778888888776543 5555555544443321 2233344443322
Q ss_pred c---CCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 042593 200 V---DRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILE 276 (352)
Q Consensus 200 ~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 276 (352)
. ...+...|.++.......|++++|...+++..+. .|+...|..+...+.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L---------------------------~ps~~a~~~lG~~~~ 464 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL---------------------------EMSWLNYVLLGKVYE 464 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------------------------CCCHHHHHHHHHHHH
Confidence 2 2335566777766666678888888888887754 356778888888888
Q ss_pred HcCChhHHHHHHhcCCCCCCCchhh
Q 042593 277 RAGRLEQAEEVASGIPSQITNVVVW 301 (352)
Q Consensus 277 ~~g~~~~A~~~~~~m~~~~~~~~~~ 301 (352)
..|+.++|.+.+++.....|...+|
T Consensus 465 ~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 465 LKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred HcCCHHHHHHHHHHHHhcCCCCchH
Confidence 8888888888888776554444443
No 180
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.10 E-value=0.002 Score=41.61 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=48.3
Q ss_pred HcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCCC
Q 042593 216 AMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQI 295 (352)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 295 (352)
...|++++|.++|+++.+.. +-+...+..+..+|.+.|++++|..+++.+....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--------------------------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--------------------------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--------------------------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHC--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45788888888888877631 2267778889999999999999999999998775
Q ss_pred CCchhhHHHH
Q 042593 296 TNVVVWRTGF 305 (352)
Q Consensus 296 ~~~~~~~~li 305 (352)
|+...|..+.
T Consensus 56 ~~~~~~~~l~ 65 (68)
T PF14559_consen 56 PDNPEYQQLL 65 (68)
T ss_dssp TTHHHHHHHH
T ss_pred cCHHHHHHHH
Confidence 5545555443
No 181
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.09 E-value=0.0053 Score=52.40 Aligned_cols=191 Identities=13% Similarity=0.007 Sum_probs=114.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhc---cCCCCC-hhhHHHHHHHHHhCCChhhHHHHHHHHHh----cCCCCCchhh
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAAC---EYTEPS-EITILAVLPAIWKNGEVRNCQLIHGYGEK----RGFNAFDIHV 174 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 174 (352)
|....+.|-..+++++|.+.|.+.... .+-..+ ...|.....++.+. +.++|...++...+ .|-...-...
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~ 116 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKC 116 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 555666777888888888888776211 111111 12455555655554 88888877777654 3322213456
Q ss_pred HHHHHHHHHhh-CChHHHHHHHHHhccC----C-C--CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhH
Q 042593 175 SNCLIDTYAKC-GCIFSASKLFEDTSVD----R-K--NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGE 246 (352)
Q Consensus 175 ~~~li~~~~~~-g~~~~a~~~~~~~~~~----~-~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ 246 (352)
+..+...|... |+++.|.+.|++.... . + -...+..+...+.+.|++++|.++|+++...-...+
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~------- 189 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENN------- 189 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc-------
Confidence 77778888888 8999999999875433 1 1 135567778889999999999999999877533211
Q ss_pred hHHHHHHHHHHhcCCCCChh-hHHHHHHHHHHcCChhHHHHHHhcCCCC------CCCchhhHHHHHHHHhccccc
Q 042593 247 EGLKFFDKMVEECEVLPDIK-HYGCLIDILERAGRLEQAEEVASGIPSQ------ITNVVVWRTGFLRLLINSYFF 315 (352)
Q Consensus 247 ~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~~~li~~~~~~g~~~ 315 (352)
..+++.. .|-..+-++...||...|.+.+++.... +........|+.++ ..|+.+
T Consensus 190 -------------l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e 251 (282)
T PF14938_consen 190 -------------LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVE 251 (282)
T ss_dssp -------------TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CC
T ss_pred -------------ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHH
Confidence 1122232 2334455777789999999999887654 12233445556654 444444
No 182
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.07 E-value=0.048 Score=44.00 Aligned_cols=182 Identities=9% Similarity=-0.000 Sum_probs=106.8
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCC--CCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCch--hHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF--QSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLV--TWNVI 96 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~--~~~~~ 96 (352)
+...+-.....+...|++.+|.+.|+.+...-- +-.....-.++.++-+.|++++|...++...+ |+.. .+--.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 444455556677889999999999999997631 12234555678899999999999999999765 4332 22222
Q ss_pred HHHHHhHHHHHHH---HHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchh
Q 042593 97 ITGLVKWTGIIDG---YSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIH 173 (352)
Q Consensus 97 i~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 173 (352)
+.+.+.|+..-.. ....+...+|... +..++.-|-......+|...+..+.+. -..
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~----------------~~~li~~yP~S~y~~~A~~~l~~l~~~-----la~ 142 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEE----------------FEELIKRYPNSEYAEEAKKRLAELRNR-----LAE 142 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHH----------------HHHHHHH-TTSTTHHHHHHHHHHHHHH-----HHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHH----------------HHHHHHHCcCchHHHHHHHHHHHHHHH-----HHH
Confidence 2221111111111 1111122233333 444445555556666666666655443 111
Q ss_pred hHHHHHHHHHhhCChHHHHHHHHHhccCCCCH----hhHHHHHHHHHcCCCHHHHH
Q 042593 174 VSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL----VSWTTIISGFAMHGMGKEAV 225 (352)
Q Consensus 174 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~ 225 (352)
.--.+.+.|.+.|.+..|..-++.+.+.-|++ ...-.++.+|.+.|..+.+.
T Consensus 143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 143 HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 22246788999999999999999988776655 34567788888888877543
No 183
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.00 E-value=0.009 Score=49.69 Aligned_cols=95 Identities=15% Similarity=0.059 Sum_probs=60.3
Q ss_pred HHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHH
Q 042593 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEA 224 (352)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a 224 (352)
+.+.+++.+|...|.+..+.... +...|..-..+|++.|.++.|.+=.+......| -..+|..|-.+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~--nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT--NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC--cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 44566677777777766665433 566666666777777777776666665544444 356677777777777777777
Q ss_pred HHHHHHHHhcCCCCCcchhh
Q 042593 225 VENFERMQKVGLKPNRSWRI 244 (352)
Q Consensus 225 ~~~~~~m~~~~~~p~~~~~~ 244 (352)
.+.|++.++ +.|+..++.
T Consensus 169 ~~aykKaLe--ldP~Ne~~K 186 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYK 186 (304)
T ss_pred HHHHHhhhc--cCCCcHHHH
Confidence 777766655 456555444
No 184
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.99 E-value=0.01 Score=49.40 Aligned_cols=97 Identities=11% Similarity=0.060 Sum_probs=62.0
Q ss_pred HHhcCChhHHHHHhccCCC--C-CchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhhHHHHHH
Q 042593 69 YVSLGFLKDSSKLFDELPE--R-NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS-EITILAVLP 144 (352)
Q Consensus 69 ~~~~g~~~~a~~~~~~m~~--~-~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~t~~~ll~ 144 (352)
..+.+++++|+..|.+..+ | |.+- |..-..+|++.|+++.|++=-+.... +.|. ..+|..|-.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVy----------ycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~ 157 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVY----------YCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGL 157 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchH----------HHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHH
Confidence 3467777777777777665 3 3343 66677777888877777776665522 3343 237777778
Q ss_pred HHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 042593 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181 (352)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 181 (352)
+|...|++++|.+.|+...+. .| +..+|..=+..
T Consensus 158 A~~~~gk~~~A~~aykKaLel--dP-~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 158 AYLALGKYEEAIEAYKKALEL--DP-DNESYKSNLKI 191 (304)
T ss_pred HHHccCcHHHHHHHHHhhhcc--CC-CcHHHHHHHHH
Confidence 888888888888777766654 44 33344433333
No 185
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.96 E-value=0.0045 Score=39.53 Aligned_cols=61 Identities=11% Similarity=0.035 Sum_probs=52.7
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCC
Q 042593 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204 (352)
Q Consensus 142 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 204 (352)
+...+.+.|++++|...++.+.+.... +...+..+..++...|++++|...|++..+..|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPD--NPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTT--HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 456788999999999999999998744 8899999999999999999999999998665554
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.96 E-value=0.015 Score=42.32 Aligned_cols=91 Identities=15% Similarity=0.078 Sum_probs=62.0
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHhCCCCc--hhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHHHHhHHH
Q 042593 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSH--VYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGLVKWTG 105 (352)
Q Consensus 30 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~~~~~~~ 105 (352)
...++-..|+.++|..+|+.....|.... ...+-.+...+...|++++|..++++... |+......+ ...
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l------~~f 80 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAAL------RVF 80 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHH------HHH
Confidence 34566678888889999988888876543 34566777788888888888888887653 442211111 222
Q ss_pred HHHHHHhcCCHHHHHHHHHHh
Q 042593 106 IIDGYSRMNRSNEALALFRRM 126 (352)
Q Consensus 106 li~~~~~~~~~~~a~~~~~~m 126 (352)
+.-++...|+.++|++.+-..
T Consensus 81 ~Al~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 81 LALALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 334667778888888887765
No 187
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.89 E-value=0.012 Score=43.15 Aligned_cols=102 Identities=11% Similarity=0.063 Sum_probs=70.5
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhH
Q 042593 204 NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQ 283 (352)
Q Consensus 204 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 283 (352)
|..++.++|.++++.|+.+....+.+..-. +.++...-... ........|+..+..+++.+|+..|++..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~~~~~--------~~~~spl~Pt~~lL~AIv~sf~~n~~i~~ 70 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKKKEGD--------YPPSSPLYPTSRLLIAIVHSFGYNGDIFS 70 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCccccCc--------cCCCCCCCCCHHHHHHHHHHHHhcccHHH
Confidence 456677788888888888888877776542 22211000000 00111677999999999999999999999
Q ss_pred HHHHHhcCCCC---CCCchhhHHHHHHHHhccccc
Q 042593 284 AEEVASGIPSQ---ITNVVVWRTGFLRLLINSYFF 315 (352)
Q Consensus 284 A~~~~~~m~~~---~~~~~~~~~li~~~~~~g~~~ 315 (352)
|.++++...+. +-+..+|..|+.-.....+..
T Consensus 71 al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~~~ 105 (126)
T PF12921_consen 71 ALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSSKR 105 (126)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCc
Confidence 99999888776 445789999998665555533
No 188
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.89 E-value=0.091 Score=43.13 Aligned_cols=132 Identities=12% Similarity=0.041 Sum_probs=97.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHH----
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL---- 178 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l---- 178 (352)
-+.++..+...|++.-.+.++++. .+...+-+......+.+.--+.||.+.|...++...+..-.. +...++.+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~v-i~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL-~~~q~~~~V~~n 257 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSV-IKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL-DGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHH-HHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh-hccchhHHHHhh
Confidence 566777777888898899999998 555555667777888888889999999999999777654333 44444333
Q ss_pred -HHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 042593 179 -IDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGL 236 (352)
Q Consensus 179 -i~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 236 (352)
-..|.-++++..|...|+++... ..|+..-|.-.-+..-.|+...|.+.++.|+..-.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 33455667888889999887655 44666666666666677899999999999987543
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.85 E-value=0.057 Score=41.89 Aligned_cols=128 Identities=16% Similarity=0.079 Sum_probs=96.8
Q ss_pred CCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC---CHhhH
Q 042593 132 TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK---NLVSW 208 (352)
Q Consensus 132 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~ 208 (352)
..|+...-..+.+++.+.|+..+|...|++...--... +....-.+.++....++...|...++.+....| ++.+-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~-d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAH-DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC-CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 45777777889999999999999999999987644444 888888899999999999999999998765533 33444
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHH
Q 042593 209 TTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287 (352)
Q Consensus 209 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 287 (352)
-.+...+...|+...|+.-|+...+. -|+...-......+.++|+.++|..-
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~---------------------------ypg~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY---------------------------YPGPQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh---------------------------CCCHHHHHHHHHHHHHhcchhHHHHH
Confidence 55667889999999999999988763 24444433445667778877666543
No 190
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.83 E-value=0.004 Score=40.31 Aligned_cols=62 Identities=23% Similarity=0.183 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCC-CHHHHHHHHHHHHh
Q 042593 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHG-MGKEAVENFERMQK 233 (352)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~ 233 (352)
+.+|..+...+...|++++|+..|++..+..| +...|..+..+|...| ++++|...+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 44555555555556666666666655443333 3455555555555555 45666655555443
No 191
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.78 E-value=0.18 Score=43.68 Aligned_cols=57 Identities=12% Similarity=0.072 Sum_probs=49.3
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHHHhcccccCccccccc
Q 042593 263 PDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQ 323 (352)
Q Consensus 263 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 323 (352)
|+...|...+.+|+..|+|++-.++... ++ .+.-|..++..|...|+..+|..+...
T Consensus 206 ~dkrfw~lki~aLa~~~~w~eL~~fa~s--kK--sPIGyepFv~~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 206 PDKRFWWLKIKALAENKDWDELEKFAKS--KK--SPIGYEPFVEACLKYGNKKEASKYIPK 262 (319)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHhC--CC--CCCChHHHHHHHHHCCCHHHHHHHHHh
Confidence 7888999999999999999999987654 33 669999999999999999988876655
No 192
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.77 E-value=0.0079 Score=45.70 Aligned_cols=63 Identities=16% Similarity=0.244 Sum_probs=51.8
Q ss_pred chhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
-..+...++..+...|+++.|.++.+.+....| |...|..+|.+|...|+..+|.+.|+++.+
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345567788888999999999999999876654 788999999999999999999999999865
No 193
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.73 E-value=0.015 Score=48.82 Aligned_cols=104 Identities=13% Similarity=-0.046 Sum_probs=76.3
Q ss_pred hhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCH----hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHh
Q 042593 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL----VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEE 247 (352)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~ 247 (352)
...|...+..+.+.|++++|...|+.+....|+. ..+-.+..+|...|++++|...|+.+.+.- |
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P--------- 211 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--P--------- 211 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--C---------
Confidence 4556666666677799999999999987776654 467778888999999999999999988642 1
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCc
Q 042593 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNV 298 (352)
Q Consensus 248 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 298 (352)
+-+.....+-.+..++...|+.++|.++++.+....|+.
T Consensus 212 ------------~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 212 ------------KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred ------------CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 112234455556777888999999999998877654443
No 194
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.69 E-value=0.029 Score=54.11 Aligned_cols=171 Identities=12% Similarity=-0.035 Sum_probs=115.7
Q ss_pred hhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 042593 152 VRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR-KNLVSWTTIISGFAMHGMGKEAVENFER 230 (352)
Q Consensus 152 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~ 230 (352)
...+...+-+.... .+.-...|..|...|+...+...|.+.|+...+-. -+...+......|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 44444444433333 33256789999999999999999999999876554 4678888999999999999999998333
Q ss_pred HHhcCCCCCcchhh---------------hHhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 231 MQKVGLKPNRSWRI---------------GEEGLKFFDKMVEECEVLP-DIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 231 m~~~~~~p~~~~~~---------------~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
.-+. ....+.. ...+...|+...+ +.| |...|..+..+|.++|+...|.++|.+....
T Consensus 552 ~~qk---a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR---~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 552 AAQK---APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALR---TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred Hhhh---chHHHHHhhhhhccccccCccchhhHHHHHHHHhc---CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 2211 1111110 5555555655543 344 7788999999999999999999999888766
Q ss_pred CCCchhhHHHH--HHHHhcccccCcccccccchhhhhhH
Q 042593 295 ITNVVVWRTGF--LRLLINSYFFSPITLNSQRLFFFPAA 331 (352)
Q Consensus 295 ~~~~~~~~~li--~~~~~~g~~~~a~~~~~~~~~~~~~~ 331 (352)
.|+. .|...- ...+..|.+++|+......++.+...
T Consensus 626 rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e 663 (1238)
T KOG1127|consen 626 RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLE 663 (1238)
T ss_pred CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3322 222222 22467888888888877776655433
No 195
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.68 E-value=0.027 Score=41.38 Aligned_cols=44 Identities=11% Similarity=-0.047 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI 146 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~ 146 (352)
..+++.+|+..|++..|+++.+...+..+++.+..+|..|++-+
T Consensus 55 L~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 55 LIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 44444445555555555555555444444444444444444443
No 196
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.68 E-value=0.0062 Score=39.37 Aligned_cols=64 Identities=14% Similarity=0.019 Sum_probs=56.7
Q ss_pred ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhC-ChHHHHHHHHHhcc
Q 042593 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG-CIFSASKLFEDTSV 200 (352)
Q Consensus 135 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~ 200 (352)
+..+|..+...+...|++++|...|++..+.... +...|..+..+|.+.| ++++|.+.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~--~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN--NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4567889999999999999999999999998644 8889999999999999 79999999987643
No 197
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.66 E-value=0.13 Score=47.92 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=18.3
Q ss_pred HHHHHHcCChhHHHHHHhcCCCC
Q 042593 272 IDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 272 i~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
|..+.++|+.-+|-+++..|.++
T Consensus 930 Ie~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 930 IEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHhhhcccchhHHHHHHHHhHH
Confidence 66778888888888888887655
No 198
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=0.27 Score=40.51 Aligned_cols=140 Identities=12% Similarity=-0.046 Sum_probs=93.2
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC--CCCHhhHHHH----
Q 042593 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD--RKNLVSWTTI---- 211 (352)
Q Consensus 138 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~l---- 211 (352)
..+.+++.+.-.|.+.-....+.+..+..... ++.....|++.-.+.||.+.|...|++..+. ..|..+++.+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~-~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQ-EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcc-cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34566666666777777788888888876555 7888888888888999999999999876543 2333333333
Q ss_pred -HHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhc
Q 042593 212 -ISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290 (352)
Q Consensus 212 -i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 290 (352)
...|.-.+++.+|...+.+..... ..|...-|.-.-+..-.|+..+|.+.++.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D--------------------------~~~~~a~NnKALcllYlg~l~DAiK~~e~ 311 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD--------------------------PRNAVANNNKALCLLYLGKLKDALKQLEA 311 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC--------------------------CCchhhhchHHHHHHHHHHHHHHHHHHHH
Confidence 334566678888888887766532 12333444444444556888888888888
Q ss_pred CCCCCCCchhhHHH
Q 042593 291 IPSQITNVVVWRTG 304 (352)
Q Consensus 291 m~~~~~~~~~~~~l 304 (352)
|...-|...+-+++
T Consensus 312 ~~~~~P~~~l~es~ 325 (366)
T KOG2796|consen 312 MVQQDPRHYLHESV 325 (366)
T ss_pred HhccCCccchhhhH
Confidence 87764444444443
No 199
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.60 E-value=0.38 Score=40.96 Aligned_cols=167 Identities=10% Similarity=-0.033 Sum_probs=98.5
Q ss_pred HhcCChhHHHHHhccCCC----CCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHh-------ccCCCCCh--
Q 042593 70 VSLGFLKDSSKLFDELPE----RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA-------CEYTEPSE-- 136 (352)
Q Consensus 70 ~~~g~~~~a~~~~~~m~~----~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-------~~~~~p~~-- 136 (352)
.+.|+++.|..++.+.+. .++...-.+-+.+ ||.-...+.+..+++.|...+++... .....|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~--yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVC--YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHH--HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 456777777777777653 1222211221111 55555555444377777666665411 12233443
Q ss_pred ---hhHHHHHHHHHhCCChhh---HHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHH
Q 042593 137 ---ITILAVLPAIWKNGEVRN---CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWT 209 (352)
Q Consensus 137 ---~t~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~ 209 (352)
.++..++.++...+..+. |..+++.+.+.... .+.++-.-++++.+.++.+.+.+++.+|....+ ....+.
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~--~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~ 159 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN--KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFD 159 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHH
Confidence 356677777877776544 55566666544333 456666778888889999999999999876633 344455
Q ss_pred HHHHHH---HcCCCHHHHHHHHHHHHhcCCCCCcc
Q 042593 210 TIISGF---AMHGMGKEAVENFERMQKVGLKPNRS 241 (352)
Q Consensus 210 ~li~~~---~~~~~~~~a~~~~~~m~~~~~~p~~~ 241 (352)
..+..+ .. .....|...++.+....+.|...
T Consensus 160 ~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 160 SILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChh
Confidence 555544 33 33456777777776665655554
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.53 E-value=0.053 Score=45.51 Aligned_cols=97 Identities=9% Similarity=-0.045 Sum_probs=72.5
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCC-chhhHHHHHHHHHhhCChHHHHHHHHHhccCCCC----HhhHHHHH
Q 042593 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF-DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN----LVSWTTII 212 (352)
Q Consensus 138 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~li 212 (352)
.|...+....+.|++++|...|+.+.+.-...+ ....+--+..+|...|++++|...|+.+....|+ ...+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 455555555667899999999999888754320 1356667888899999999999999998765443 44555566
Q ss_pred HHHHcCCCHHHHHHHHHHHHhc
Q 042593 213 SGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
..+...|+.++|..+|+++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6788889999999999988874
No 201
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.51 E-value=0.016 Score=37.92 Aligned_cols=52 Identities=8% Similarity=-0.102 Sum_probs=22.3
Q ss_pred HHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhc
Q 042593 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199 (352)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 199 (352)
+.+.++++.|..+++.+.+.+.. +...+.....++.+.|++++|.+.|+...
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD--DPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc--cchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33444444444444444443322 33444444444444444444444444443
No 202
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.49 E-value=0.11 Score=37.67 Aligned_cols=108 Identities=12% Similarity=0.107 Sum_probs=63.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhccCCCCC--hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCC-CCchhhHHHHHHHH
Q 042593 106 IIDGYSRMNRSNEALALFRRMAACEYTEPS--EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN-AFDIHVSNCLIDTY 182 (352)
Q Consensus 106 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~ 182 (352)
+..++-..|+.++|+.+|++. ...|.... ...+..+..++...|+.++|..+++........ +.+......+.-++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~A-l~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRA-LAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHH-HHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345566778888888888887 44554433 235666777777788888888888877665322 10112222233466
Q ss_pred HhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHH
Q 042593 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFA 216 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~ 216 (352)
...|+.++|.+.+-... .++...|..-|..|.
T Consensus 86 ~~~gr~~eAl~~~l~~l--a~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL--AETLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 67778887777775542 233334555554443
No 203
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.058 Score=45.15 Aligned_cols=100 Identities=10% Similarity=-0.041 Sum_probs=69.1
Q ss_pred CChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhC---ChHHHHHHHHHhccCCC-CHhhHH
Q 042593 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG---CIFSASKLFEDTSVDRK-NLVSWT 209 (352)
Q Consensus 134 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~-~~~~~~ 209 (352)
-|...|..|..+|...|+.+.|...|....+...+ ++..+..+..++..+. ...++.++|++.....| |+.+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~--n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD--NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 35567778888888888888888777777665433 6666666666665543 34567777777766544 555566
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcC
Q 042593 210 TIISGFAMHGMGKEAVENFERMQKVG 235 (352)
Q Consensus 210 ~li~~~~~~~~~~~a~~~~~~m~~~~ 235 (352)
-|...+...|++.+|...|+.|.+..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 66667777888888888888887764
No 204
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.42 E-value=0.0075 Score=40.14 Aligned_cols=62 Identities=16% Similarity=0.145 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHhhCChHHHHHHHHHhccC-------CCC-HhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVD-------RKN-LVSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
..+++.+..+|...|++++|++.|++.... .|+ ..+++.+..+|...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345666666677777777776666654321 122 45566677777777777777777776543
No 205
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.2 Score=42.06 Aligned_cols=115 Identities=12% Similarity=-0.008 Sum_probs=90.0
Q ss_pred CCchhhHHHHHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCC---CHHHHHHHHHHHHhcCCCCCcchhh
Q 042593 169 AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHG---MGKEAVENFERMQKVGLKPNRSWRI 244 (352)
Q Consensus 169 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~ 244 (352)
|.|..-|-.|..+|...|+.+.|..-|....+. ++|...+..+..++..+. ...++..+|+++...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~---------- 222 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL---------- 222 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc----------
Confidence 448999999999999999999999999987655 567777777766654332 457888888888863
Q ss_pred hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHHH
Q 042593 245 GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLL 309 (352)
Q Consensus 245 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~ 309 (352)
-+-|+.+...|...+...|++.+|...|+.|.+.-|....|..+|....
T Consensus 223 ----------------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~i 271 (287)
T COG4235 223 ----------------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSI 271 (287)
T ss_pred ----------------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 2236777778889999999999999999999988566667777776543
No 206
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.34 E-value=0.33 Score=45.77 Aligned_cols=114 Identities=11% Similarity=0.000 Sum_probs=88.0
Q ss_pred hhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHH
Q 042593 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKF 251 (352)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~ 251 (352)
.-+.+--+.-+...|+..+|.++-.+. .-||-..|-.-+.+++..++|++-+++-+.++.
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~F--kipdKr~~wLk~~aLa~~~kweeLekfAkskks------------------ 743 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDF--KIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------------------ 743 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhc--CCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------------------
Confidence 344455566677788888888888877 578888888888888888888887777665442
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHHHhcccccCcccccccch
Q 042593 252 FDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRL 325 (352)
Q Consensus 252 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 325 (352)
+.-|.-.+.+|.+.|+.++|.+.+.+.... .-...+|++.|++.+|..+..+..
T Consensus 744 -------------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l-------~ekv~ay~~~~~~~eAad~A~~~r 797 (829)
T KOG2280|consen 744 -------------PIGYLPFVEACLKQGNKDEAKKYIPRVGGL-------QEKVKAYLRVGDVKEAADLAAEHR 797 (829)
T ss_pred -------------CCCchhHHHHHHhcccHHHHhhhhhccCCh-------HHHHHHHHHhccHHHHHHHHHHhc
Confidence 233444788899999999999999888754 167889999999999998887764
No 207
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.25 E-value=0.45 Score=38.35 Aligned_cols=157 Identities=15% Similarity=0.028 Sum_probs=91.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q 042593 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPS-EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183 (352)
Q Consensus 105 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 183 (352)
.....+...|++++|.+.|+++.....-.|- ......+..++.+.|+++.|...++.+.+.-+.. ...-+...+.+.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~-~~~~~A~Y~~g~~ 88 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNS-PKADYALYMLGLS 88 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT--TTHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC-cchhhHHHHHHHH
Confidence 3445567889999999999999444332232 2356788889999999999999999998775543 2222322333322
Q ss_pred h-------------hCChHHHHHHHHHhccCCCCHhh-----------HH-------HHHHHHHcCCCHHHHHHHHHHHH
Q 042593 184 K-------------CGCIFSASKLFEDTSVDRKNLVS-----------WT-------TIISGFAMHGMGKEAVENFERMQ 232 (352)
Q Consensus 184 ~-------------~g~~~~a~~~~~~~~~~~~~~~~-----------~~-------~li~~~~~~~~~~~a~~~~~~m~ 232 (352)
. .+....|...|+.+...-|+..- .+ .+...|.+.|.+..|..-++.++
T Consensus 89 ~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~ 168 (203)
T PF13525_consen 89 YYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVI 168 (203)
T ss_dssp HHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHH
T ss_pred HHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1 12234566667766555443311 01 12344666777777777777766
Q ss_pred hcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHH
Q 042593 233 KVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAE 285 (352)
Q Consensus 233 ~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 285 (352)
+.= | +.+........++.+|.+.|..+.|.
T Consensus 169 ~~y--p---------------------~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 169 ENY--P---------------------DTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHS--T---------------------TSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHC--C---------------------CCchHHHHHHHHHHHHHHhCChHHHH
Confidence 531 1 11223346678899999999988554
No 208
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.05 E-value=0.1 Score=46.60 Aligned_cols=64 Identities=16% Similarity=0.035 Sum_probs=35.9
Q ss_pred chhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCH----hhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL----VSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
+...++.+..+|.+.|++++|...|++.....|+. .+|..+..+|...|+.++|...+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555555566666666666666665544444432 23555555666666666666666655553
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.05 E-value=0.027 Score=36.77 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=49.7
Q ss_pred HHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 042593 179 IDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235 (352)
Q Consensus 179 i~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 235 (352)
-..|.+.+++++|.++++.+....| ++..|.....++.+.|++++|.+.+++..+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3578899999999999999877755 67778888899999999999999999999754
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.02 E-value=0.019 Score=38.11 Aligned_cols=63 Identities=14% Similarity=0.264 Sum_probs=47.2
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHhccCCC-----CCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHh
Q 042593 59 VYVNTALGDMYVSLGFLKDSSKLFDELPE-----RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM 126 (352)
Q Consensus 59 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m 126 (352)
..+++.+...|...|++++|++.|++..+ ++... .++. +++.+..++...|++++|++.+++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--~~a~---~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHP--DTAN---TLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHH--HHHH---HHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCH--HHHH---HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45788888999999999999998888753 22111 1111 1899999999999999999999886
No 211
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.13 Score=45.05 Aligned_cols=157 Identities=11% Similarity=-0.037 Sum_probs=101.1
Q ss_pred HHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHH--HHhhCChHHHHHHHHHhccCCCCHhhHH------------
Q 042593 144 PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT--YAKCGCIFSASKLFEDTSVDRKNLVSWT------------ 209 (352)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~------------ 209 (352)
.++.-.|+.++|..+--..++.... ..+..++++ +--.++.+.|...|++-....|+-..--
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~----n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDAT----NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccc----hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHH
Confidence 3456778899988887777766432 233344444 3356788999999998765555432211
Q ss_pred -HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHH
Q 042593 210 -TIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288 (352)
Q Consensus 210 -~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 288 (352)
.=-.-..++|++..|.+.|.+.+. +.|+ ...|+...|.....+..+.|+.++|..-.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~--idP~--------------------n~~~naklY~nra~v~~rLgrl~eaisdc 310 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALN--IDPS--------------------NKKTNAKLYGNRALVNIRLGRLREAISDC 310 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhc--CCcc--------------------ccchhHHHHHHhHhhhcccCCchhhhhhh
Confidence 112224678999999999999775 4555 66777888888888888888888888887
Q ss_pred hcCCCC-CCCchhhHHHHHHHHhcccccCcccccccchh
Q 042593 289 SGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQRLF 326 (352)
Q Consensus 289 ~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 326 (352)
++.... +.-+..+-.-..++...+++++|.+.+...++
T Consensus 311 ~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 311 NEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777665 11112222223345566667766666655543
No 212
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.84 E-value=0.34 Score=45.01 Aligned_cols=62 Identities=13% Similarity=0.201 Sum_probs=36.5
Q ss_pred CcccHHHHHHHHHhcCCcchHHHH--HHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQL--HAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE 87 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~--~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 87 (352)
+.-.++..=++|.+-++..--.-+ +++++++|-.|+... +...++-.|++.+|.++|.+--.
T Consensus 597 eAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~ 660 (1081)
T KOG1538|consen 597 EALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGH 660 (1081)
T ss_pred hhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCc
Confidence 334455555666655554322222 345566676676653 45566777888888888877543
No 213
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.82 E-value=0.42 Score=43.98 Aligned_cols=164 Identities=15% Similarity=0.058 Sum_probs=87.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh-----hHHHHHHHHHh----CCChhhHHHHHHHHHhcCCCCCchh
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI-----TILAVLPAIWK----NGEVRNCQLIHGYGEKRGFNAFDIH 173 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-----t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 173 (352)
...++...+-.||-+.+++.+.+-.+..++.-... +|+.++..++. ..+.+.|.++++.+.+. -| +..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP-~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YP-NSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CC-CcH
Confidence 44455555556677777777666633333322211 24444443332 34556666777666655 23 333
Q ss_pred hHH-HHHHHHHhhCChHHHHHHHHHhccC-----CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHh
Q 042593 174 VSN-CLIDTYAKCGCIFSASKLFEDTSVD-----RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEE 247 (352)
Q Consensus 174 ~~~-~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~ 247 (352)
.|. .-.+.+...|++++|.+.|+..... +.....+--+.-.+.-..+|++|.+.|.++.+..
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s------------ 335 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES------------ 335 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc------------
Confidence 332 2345556667777777777754322 1122223334444556667777777777766532
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCh-------hHHHHHHhcCCCC
Q 042593 248 GLKFFDKMVEECEVLPDIKHYGCLIDILERAGRL-------EQAEEVASGIPSQ 294 (352)
Q Consensus 248 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-------~~A~~~~~~m~~~ 294 (352)
.+.+..++| ....++...|+. ++|.++|.+....
T Consensus 336 ------------~WSka~Y~Y-~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 336 ------------KWSKAFYAY-LAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred ------------ccHHHHHHH-HHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 333333333 223444567777 8888888876544
No 214
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.81 E-value=1.2 Score=39.22 Aligned_cols=166 Identities=14% Similarity=0.057 Sum_probs=98.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhccCCC-C-ChhhHHHHHHHHHh---CCChhhHHHHHHHHHhcCCCCCchhhHHHHHH
Q 042593 106 IIDGYSRMNRSNEALALFRRMAACEYTE-P-SEITILAVLPAIWK---NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180 (352)
Q Consensus 106 li~~~~~~~~~~~a~~~~~~m~~~~~~~-p-~~~t~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 180 (352)
++-+|-...+++...++++.+....... + ....--...-|+.+ .|+.++|.+++..+......+ ++.+|..+.+
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~-~~d~~gL~GR 225 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP-DPDTLGLLGR 225 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC-ChHHHHHHHH
Confidence 3445888999999999999994322111 1 12222344555666 899999999999966665556 8888988888
Q ss_pred HHHhh---------CChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCC-HH---HHHHHH---HH-HHhcCCCCCcchh
Q 042593 181 TYAKC---------GCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGM-GK---EAVENF---ER-MQKVGLKPNRSWR 243 (352)
Q Consensus 181 ~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~---~a~~~~---~~-m~~~~~~p~~~~~ 243 (352)
.|-.. ..++.|.+.|.+--...||..+=-.+...+...|. .+ +..++- .. ..+.|..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~------ 299 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL------ 299 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc------
Confidence 87532 23667777777654334443221111222222222 11 222221 11 1111111
Q ss_pred hhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 244 IGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 244 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
.-..+--.+..+..+..-.|+.++|.+..+.|...
T Consensus 300 ----------------~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 ----------------EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ----------------cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 11234455677889999999999999999998876
No 215
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=0.45 Score=45.49 Aligned_cols=169 Identities=11% Similarity=0.028 Sum_probs=109.4
Q ss_pred CCCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHH----HhC------------CCCchhhHHHHHHHHHhcCChhHH
Q 042593 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFS----KVG------------FQSHVYVNTALGDMYVSLGFLKDS 78 (352)
Q Consensus 15 ~g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~----~~~------------~~~~~~~~~~li~~~~~~g~~~~a 78 (352)
+|..|..++..+.+.+++++...+.+-.-.-+++... ..+ .....-+...-++..++...++-|
T Consensus 274 ~~~~~~s~s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~A 353 (933)
T KOG2114|consen 274 KGTENTSLSNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVA 353 (933)
T ss_pred CCCCCcccCccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHH
Confidence 3444444566778888899988888765444444433 333 112233455667788888888888
Q ss_pred HHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHH
Q 042593 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLI 158 (352)
Q Consensus 79 ~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 158 (352)
..+-+.-..+....-+. .-.-.+-+-+.|++++|...|-+- - .-++|+ .++.-|-...++..--.+
T Consensus 354 i~LAk~~~~d~d~~~~i-------~~kYgd~Ly~Kgdf~~A~~qYI~t-I-~~le~s-----~Vi~kfLdaq~IknLt~Y 419 (933)
T KOG2114|consen 354 INLAKSQHLDEDTLAEI-------HRKYGDYLYGKGDFDEATDQYIET-I-GFLEPS-----EVIKKFLDAQRIKNLTSY 419 (933)
T ss_pred HHHHHhcCCCHHHHHHH-------HHHHHHHHHhcCCHHHHHHHHHHH-c-ccCChH-----HHHHHhcCHHHHHHHHHH
Confidence 88877654322222111 222334466789999999888776 1 112333 345556666777777788
Q ss_pred HHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhc
Q 042593 159 HGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199 (352)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 199 (352)
++.+.+.|+. +...-..|+.+|.+.++.++-.++.+...
T Consensus 420 Le~L~~~gla--~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 420 LEALHKKGLA--NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHcccc--cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 8888888887 56666788999999988888777777654
No 216
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.64 E-value=0.66 Score=42.21 Aligned_cols=158 Identities=10% Similarity=0.019 Sum_probs=84.9
Q ss_pred HHHHhcCCcchHHHHHHHHH-HhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHH
Q 042593 32 RTCVTLSYPNLGTQLHAVFS-KVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGY 110 (352)
Q Consensus 32 ~~~~~~g~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~ 110 (352)
+...-.++++++.+..+.-. -..++ ....+.++..+-+.|..+.|+.+-.+- +.. ....
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~---~~r---------------FeLA 328 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDP---DHR---------------FELA 328 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H---HHH---------------HHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh---HHH---------------hHHH
Confidence 33445566766655553111 11112 344677777777788888887775442 111 1334
Q ss_pred HhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHH
Q 042593 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190 (352)
Q Consensus 111 ~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 190 (352)
.+.|+++.|.++.++. .+...|..|.....+.|+++-|+..+++.. -|..|+-.|.-.|+.+.
T Consensus 329 l~lg~L~~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~----------d~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK----------DFSGLLLLYSSTGDREK 391 (443)
T ss_dssp HHCT-HHHHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHH
T ss_pred HhcCCHHHHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc----------CccccHHHHHHhCCHHH
Confidence 5677777777665544 355677777777777777777777776432 24566667777777766
Q ss_pred HHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 042593 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230 (352)
Q Consensus 191 a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 230 (352)
-.++.+....... +|....++.-.|+.++..+++.+
T Consensus 392 L~kl~~~a~~~~~----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 392 LSKLAKIAEERGD----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHTT-----HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHccC----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666554432211 44445555556666666666654
No 217
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.63 E-value=0.38 Score=42.24 Aligned_cols=255 Identities=11% Similarity=0.045 Sum_probs=126.8
Q ss_pred ccHHHHH--HHHHhcCCcchHHHHHHHHHHhCCCCch----hhHHHHHHHHHhcCChhHHHHHhccCC-------C--CC
Q 042593 25 FTYSFLI--RTCVTLSYPNLGTQLHAVFSKVGFQSHV----YVNTALGDMYVSLGFLKDSSKLFDELP-------E--RN 89 (352)
Q Consensus 25 ~~~~~ll--~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~-------~--~~ 89 (352)
..|...+ .-+|+.|+.+....+|+..++.|- -|. .+|.-|.++|.-.+++++|.++...=. . ..
T Consensus 16 SCleLalEGERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGE 94 (639)
T KOG1130|consen 16 SCLELALEGERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGE 94 (639)
T ss_pred HHHHHHHHHHHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcc
Confidence 3444444 458899999999999999999883 333 357777778888888999887654311 0 00
Q ss_pred chhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhH---hccC-CCCChhhHHHHHHHHHhCCC--------------
Q 042593 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA---ACEY-TEPSEITILAVLPAIWKNGE-------------- 151 (352)
Q Consensus 90 ~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~---~~~~-~~p~~~t~~~ll~~~~~~~~-------------- 151 (352)
..+ ...|-+.+--.|.+++|+-.-.+-+ +.-| .......+..+.+.|...|+
T Consensus 95 AKs----------sgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~ 164 (639)
T KOG1130|consen 95 AKS----------SGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFN 164 (639)
T ss_pred ccc----------cccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhccccc
Confidence 000 1111111222233333322211100 0000 00111223333333332221
Q ss_pred ------hhhHHHHHHHH----HhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhc---cC----CCCHhhHHHHHHH
Q 042593 152 ------VRNCQLIHGYG----EKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS---VD----RKNLVSWTTIISG 214 (352)
Q Consensus 152 ------~~~a~~~~~~~----~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~----~~~~~~~~~li~~ 214 (352)
++.|.++|.+- .+.|-...-...|..|-+.|--.|+++.|+..-+.-. +. ...-..+..+-.+
T Consensus 165 ~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~ 244 (639)
T KOG1130|consen 165 AEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNC 244 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchh
Confidence 23334443322 2222221123456666666666777777665544311 11 1223445666666
Q ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCcch------hh----------hHhHHHHHHHHHHh----cCCCCChhhHHHHHHH
Q 042593 215 FAMHGMGKEAVENFERMQKVGLKPNRSW------RI----------GEEGLKFFDKMVEE----CEVLPDIKHYGCLIDI 274 (352)
Q Consensus 215 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~------~~----------~~~a~~~~~~m~~~----~~~~p~~~~~~~li~~ 274 (352)
+.-.|+++.|.+.|+.-...-++....+ |+ ++.|+.++.+-..- ....-....+.+|..+
T Consensus 245 hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna 324 (639)
T KOG1130|consen 245 HIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNA 324 (639)
T ss_pred hhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 6667777777776665433222111111 11 55555555443321 0112245677888999
Q ss_pred HHHcCChhHHHHHHhc
Q 042593 275 LERAGRLEQAEEVASG 290 (352)
Q Consensus 275 ~~~~g~~~~A~~~~~~ 290 (352)
|...|..++|..+.+.
T Consensus 325 ~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 325 FNALGEHRKALYFAEL 340 (639)
T ss_pred HHhhhhHHHHHHHHHH
Confidence 9999998888776543
No 218
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.63 E-value=0.11 Score=42.87 Aligned_cols=102 Identities=11% Similarity=0.009 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCC-CCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCC-CCchhhHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYT-EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN-AFDIHVSNCLID 180 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~ 180 (352)
|+.-+..+ +.|++..|..-|....+...- .-....+--|..++...|++++|..+|..+.+.-.. |.-+...-.|..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 55555543 456677777777777333211 112234556777777777777777777777654332 223455666777
Q ss_pred HHHhhCChHHHHHHHHHhccCCCCH
Q 042593 181 TYAKCGCIFSASKLFEDTSVDRKNL 205 (352)
Q Consensus 181 ~~~~~g~~~~a~~~~~~~~~~~~~~ 205 (352)
+..+.|+.++|..+|+++.+..|+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 7777777788888877777666654
No 219
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.62 E-value=0.7 Score=42.06 Aligned_cols=134 Identities=17% Similarity=0.148 Sum_probs=100.3
Q ss_pred cccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhH
Q 042593 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKW 103 (352)
Q Consensus 24 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~ 103 (352)
....+.+++-+-+.|..+.|+++- .|+.+ --+...+.|+++.|.++-++.. +... |
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~---------~D~~~---rFeLAl~lg~L~~A~~~a~~~~--~~~~----------W 350 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFV---------TDPDH---RFELALQLGNLDIALEIAKELD--DPEK----------W 350 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHS---------S-HHH---HHHHHHHCT-HHHHHHHCCCCS--THHH----------H
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhc---------CChHH---HhHHHHhcCCHHHHHHHHHhcC--cHHH----------H
Confidence 344788888888999999998863 33332 2455678999999999998886 3445 9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q 042593 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183 (352)
Q Consensus 104 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 183 (352)
..|.....+.|+++-|.+.|.+. + -+..++--|.-.|+.++..++.+...+.|- +|....++.
T Consensus 351 ~~Lg~~AL~~g~~~lAe~c~~k~-~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-------~n~af~~~~ 413 (443)
T PF04053_consen 351 KQLGDEALRQGNIELAEECYQKA-K---------DFSGLLLLYSSTGDREKLSKLAKIAEERGD-------INIAFQAAL 413 (443)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHC-T----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--------HHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHhh-c---------CccccHHHHHHhCCHHHHHHHHHHHHHccC-------HHHHHHHHH
Confidence 99999999999999999999998 4 255677778888999888888887776653 456667777
Q ss_pred hhCChHHHHHHHHHh
Q 042593 184 KCGCIFSASKLFEDT 198 (352)
Q Consensus 184 ~~g~~~~a~~~~~~~ 198 (352)
-.|+.+++.+++.+-
T Consensus 414 ~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 414 LLGDVEECVDLLIET 428 (443)
T ss_dssp HHT-HHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHc
Confidence 789999988888765
No 220
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.62 E-value=0.51 Score=36.41 Aligned_cols=125 Identities=12% Similarity=-0.002 Sum_probs=59.8
Q ss_pred CCCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCC--hhHHHHHhccCCCCCchh
Q 042593 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF--LKDSSKLFDELPERNLVT 92 (352)
Q Consensus 15 ~g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~ 92 (352)
.++.| +...|..++..+.+.|++. .+.++...++-+|.......+-.+..... ..-|.+++.++. ..
T Consensus 23 ~~i~~---~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~~ 91 (167)
T PF07035_consen 23 HNIPV---QHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----TA 91 (167)
T ss_pred cCCCC---CHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----hh
Confidence 56666 6666666666666666643 33334445554444443333322222110 222333333332 11
Q ss_pred HHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhc
Q 042593 93 WNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165 (352)
Q Consensus 93 ~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 165 (352)
+..++..+...|++-+|+++..+..+ .+...-..++.+..+.+|...-..+++-..+.
T Consensus 92 ----------~~~iievLL~~g~vl~ALr~ar~~~~-----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 92 ----------YEEIIEVLLSKGQVLEALRYARQYHK-----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----------HHHHHHHHHhCCCHHHHHHHHHHcCC-----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555666666666666666655411 12222344555555555555545555444443
No 221
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.61 E-value=0.094 Score=43.48 Aligned_cols=106 Identities=13% Similarity=0.101 Sum_probs=75.2
Q ss_pred CCCcccHHHHHHHHHhc-----CCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHH
Q 042593 21 LFDSFTYSFLIRTCVTL-----SYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNV 95 (352)
Q Consensus 21 ~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 95 (352)
.+|-.+|-..+..+... +.++-.-..+..|.+.|+..|..+|+.|++.+-+..-+.. | .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~-----------n-----v 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ-----------N-----V 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH-----------H-----H
Confidence 44777788887777643 5666666778889999999999999999988765322111 1 1
Q ss_pred HHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCCh
Q 042593 96 IITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEV 152 (352)
Q Consensus 96 ~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~ 152 (352)
+..+.-.|- .+-+-+++++++| ...|+.||..+-..+++++.+.+..
T Consensus 128 -------fQ~~F~HYP--~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 -------FQKVFLHYP--QQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred -------HHHHHhhCc--hhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhcccccc
Confidence 111111122 2344578999999 9999999999999999999887753
No 222
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.54 E-value=0.75 Score=42.85 Aligned_cols=199 Identities=12% Similarity=0.098 Sum_probs=118.5
Q ss_pred hHHHHHHhhccCCCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhc
Q 042593 4 YKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFD 83 (352)
Q Consensus 4 ~~~M~~~~~~~~g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 83 (352)
+++|++ .|-.| +... +...|+-.|.+.+|-++|.. .|.. |..+..|.....++.|.+++.
T Consensus 623 L~~~k~-----rge~P---~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~ 682 (1081)
T KOG1538|consen 623 LEERKK-----RGETP---NDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLG 682 (1081)
T ss_pred HHHHHh-----cCCCc---hHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhh
Confidence 356666 78888 6553 34567778888888887753 3432 123444555555555555544
Q ss_pred cCCCCCchhHHHHHHHHHhH-------HHHHHHHHhcCCHHHHHHHHH-----HhHhccCC---CCChhhHHHHHHHHHh
Q 042593 84 ELPERNLVTWNVIITGLVKW-------TGIIDGYSRMNRSNEALALFR-----RMAACEYT---EPSEITILAVLPAIWK 148 (352)
Q Consensus 84 ~m~~~~~~~~~~~i~~~~~~-------~~li~~~~~~~~~~~a~~~~~-----~m~~~~~~---~p~~~t~~~ll~~~~~ 148 (352)
.-.. .+---+++--+.| -+....+..+|+.++|..+.- +|.-+-+- ..+..+...+...+.+
T Consensus 683 ~g~~---~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~ 759 (1081)
T KOG1538|consen 683 SGDP---KEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKK 759 (1081)
T ss_pred cCCh---HHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhh
Confidence 3321 0000000000001 122244566788777776632 22121111 2234466666666777
Q ss_pred CCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhh-----------HHHHHHHHHc
Q 042593 149 NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVS-----------WTTIISGFAM 217 (352)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----------~~~li~~~~~ 217 (352)
......|-++|..|-. ...+++.....+++++|..+-+...+..||+.. |.-.=.+|.+
T Consensus 760 l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 760 LDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHK 829 (1081)
T ss_pred ccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHH
Confidence 7888888888886632 236678888999999999999988766666532 3334467889
Q ss_pred CCCHHHHHHHHHHHHhcC
Q 042593 218 HGMGKEAVENFERMQKVG 235 (352)
Q Consensus 218 ~~~~~~a~~~~~~m~~~~ 235 (352)
.|+-.+|.++++++....
T Consensus 830 AGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 830 AGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred hcchHHHHHHHHHhhhhh
Confidence 999999999998876643
No 223
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.52 E-value=0.06 Score=40.79 Aligned_cols=55 Identities=15% Similarity=0.104 Sum_probs=26.4
Q ss_pred HHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHh
Q 042593 142 VLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198 (352)
Q Consensus 142 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 198 (352)
++..+...|+++.|..+.+.+....+. +...|..+|.+|...|+...|.++|+.+
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~dP~--~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALDPY--DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHSTT---HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 333444455555555555555544322 4555555555555555555555555544
No 224
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.51 E-value=0.73 Score=34.51 Aligned_cols=126 Identities=18% Similarity=0.111 Sum_probs=81.2
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcC
Q 042593 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH 218 (352)
Q Consensus 139 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~ 218 (352)
...++..+...+.......+++.+.+.+. . +....+.++..|++.+ .++..+.++. ..+......++..|.+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~-~~~~~~~li~ly~~~~-~~~ll~~l~~----~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-E-NPALQTKLIELYAKYD-PQKEIERLDN----KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-c-chhHHHHHHHHHHHHC-HHHHHHHHHh----ccccCCHHHHHHHHHHc
Confidence 44667777777788888888888887764 3 7778888888888764 3445555552 22334445577777788
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc-CChhHHHHHHhcCCCCCCC
Q 042593 219 GMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERA-GRLEQAEEVASGIPSQITN 297 (352)
Q Consensus 219 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~ 297 (352)
+.++++.-++.++... ...+..+... ++.+.|.+.+.+-. +
T Consensus 83 ~l~~~~~~l~~k~~~~----------------------------------~~Al~~~l~~~~d~~~a~~~~~~~~----~ 124 (140)
T smart00299 83 KLYEEAVELYKKDGNF----------------------------------KDAIVTLIEHLGNYEKAIEYFVKQN----N 124 (140)
T ss_pred CcHHHHHHHHHhhcCH----------------------------------HHHHHHHHHcccCHHHHHHHHHhCC----C
Confidence 8888888888775431 1122333333 67777777776632 5
Q ss_pred chhhHHHHHHHH
Q 042593 298 VVVWRTGFLRLL 309 (352)
Q Consensus 298 ~~~~~~li~~~~ 309 (352)
...|..++..+.
T Consensus 125 ~~lw~~~~~~~l 136 (140)
T smart00299 125 PELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHHHH
Confidence 567777776654
No 225
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.50 E-value=0.54 Score=34.42 Aligned_cols=137 Identities=14% Similarity=0.102 Sum_probs=78.2
Q ss_pred hcCChhHHHHHhccCCC-CCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhC
Q 042593 71 SLGFLKDSSKLFDELPE-RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149 (352)
Q Consensus 71 ~~g~~~~a~~~~~~m~~-~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~ 149 (352)
-.|.+++..++..+... .+..- ||.+|--....-+-+-..++++.+ |--.|... .
T Consensus 14 ldG~V~qGveii~k~v~Ssni~E----------~NWvICNiiDaa~C~yvv~~LdsI----GkiFDis~----------C 69 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSSNIKE----------YNWVICNIIDAADCDYVVETLDSI----GKIFDISK----------C 69 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS-HHH----------HTHHHHHHHHH--HHHHHHHHHHH----GGGS-GGG-----------
T ss_pred HhchHHHHHHHHHHHcCcCCccc----------cceeeeecchhhchhHHHHHHHHH----hhhcCchh----------h
Confidence 35777777777777654 33344 444444444444444445555544 22233322 2
Q ss_pred CChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHH
Q 042593 150 GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENF 228 (352)
Q Consensus 150 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~ 228 (352)
|++..+...+.. .|. ........+..+...|+-+.-.++..++.+. .+++...-.+..+|.+.|+..++.+++
T Consensus 70 ~NlKrVi~C~~~---~n~---~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell 143 (161)
T PF09205_consen 70 GNLKRVIECYAK---RNK---LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELL 143 (161)
T ss_dssp S-THHHHHHHHH---TT------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred cchHHHHHHHHH---hcc---hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 333332222222 111 4455677788999999999999999887644 788888889999999999999999999
Q ss_pred HHHHhcCCC
Q 042593 229 ERMQKVGLK 237 (352)
Q Consensus 229 ~~m~~~~~~ 237 (352)
.+.-+.|++
T Consensus 144 ~~ACekG~k 152 (161)
T PF09205_consen 144 KEACEKGLK 152 (161)
T ss_dssp HHHHHTT-H
T ss_pred HHHHHhchH
Confidence 998888753
No 226
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.50 E-value=1.7 Score=38.80 Aligned_cols=128 Identities=15% Similarity=0.039 Sum_probs=95.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccC-CCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEY-TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 181 (352)
|...++.-.+..-++.|..+|-+. ++.+ +.+++..+++++.-++. |+...|.++|+.-...-.. +..--+..+..
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~-rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f~d--~~~y~~kyl~f 475 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKL-RKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKFPD--STLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH-hccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhCCC--chHHHHHHHHH
Confidence 777777777888889999999999 5555 67888889999887765 7788888888865544222 23333466778
Q ss_pred HHhhCChHHHHHHHHHhccC-CCC--HhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 182 YAKCGCIFSASKLFEDTSVD-RKN--LVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 182 ~~~~g~~~~a~~~~~~~~~~-~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
+...++-+.|..+|+.-... ..+ ...|..+|+.=..-|+...+..+=++|.+.
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 88889999999999854322 222 567889998888889988888887777663
No 227
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.49 E-value=0.38 Score=44.28 Aligned_cols=183 Identities=14% Similarity=0.031 Sum_probs=113.7
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC-CCchhHHHHHHHHHhHHHHHHHHHh----cCCHHH
Q 042593 44 TQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE-RNLVTWNVIITGLVKWTGIIDGYSR----MNRSNE 118 (352)
Q Consensus 44 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~i~~~~~~~~li~~~~~----~~~~~~ 118 (352)
.-+|..+... +|| ....++...+=.||-+.+++++.+..+ +++...-+.+. +..|+.++..++. ..+.+.
T Consensus 177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~-LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALV-LLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHH-HHHHHHHHHHHcCCcccCCCHHH
Confidence 4556666553 244 344567777788888888888887654 33322111111 1126666665554 457888
Q ss_pred HHHHHHHhHhccCCCCChhhHHHH-HHHHHhCCChhhHHHHHHHHHhc--CCCCCchhhHHHHHHHHHhhCChHHHHHHH
Q 042593 119 ALALFRRMAACEYTEPSEITILAV-LPAIWKNGEVRNCQLIHGYGEKR--GFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195 (352)
Q Consensus 119 a~~~~~~m~~~~~~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 195 (352)
|.++++.+.+ . -|+...|... .+.+...|++++|.+.++..... .......-.+--+.-++.-.+++++|.+.|
T Consensus 252 a~~lL~~~~~-~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f 328 (468)
T PF10300_consen 252 AEELLEEMLK-R--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYF 328 (468)
T ss_pred HHHHHHHHHH-h--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHH
Confidence 9999999843 2 3666655433 34466789999999999975532 221113334446677788899999999999
Q ss_pred HHhccCCCCHhhHHHHHH--HHHcCCCH-------HHHHHHHHHHHhc
Q 042593 196 EDTSVDRKNLVSWTTIIS--GFAMHGMG-------KEAVENFERMQKV 234 (352)
Q Consensus 196 ~~~~~~~~~~~~~~~li~--~~~~~~~~-------~~a~~~~~~m~~~ 234 (352)
..+.+......++-..+. ++...|+. ++|.++|.+....
T Consensus 329 ~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 329 LRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 998766444333333333 34556666 8888888887553
No 228
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.45 E-value=0.77 Score=34.40 Aligned_cols=130 Identities=9% Similarity=0.064 Sum_probs=81.2
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHh
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~ 102 (352)
+......++..+.+.+.......+++.+...+ ..++...+.++..|++.+ .++..+.++. ..+...
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd---------- 71 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYD---------- 71 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCC----------
Confidence 34446678888888888888888888888776 467778888888888763 3445555552 122222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhC-CChhhHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN-GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 181 (352)
...+++.|.+.+-++++.-++.++ .. +...+..+... ++.+.|.++... .. +...|..++..
T Consensus 72 ~~~~~~~c~~~~l~~~~~~l~~k~-~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~-~~~lw~~~~~~ 134 (140)
T smart00299 72 IEKVGKLCEKAKLYEEAVELYKKD-GN---------FKDAIVTLIEHLGNYEKAIEYFVK------QN-NPELWAEVLKA 134 (140)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHhh-cC---------HHHHHHHHHHcccCHHHHHHHHHh------CC-CHHHHHHHHHH
Confidence 445667777777777777777776 21 11222223233 666666666654 11 55566666665
Q ss_pred HH
Q 042593 182 YA 183 (352)
Q Consensus 182 ~~ 183 (352)
+.
T Consensus 135 ~l 136 (140)
T smart00299 135 LL 136 (140)
T ss_pred HH
Confidence 54
No 229
>PRK15331 chaperone protein SicA; Provisional
Probab=95.38 E-value=0.15 Score=39.00 Aligned_cols=88 Identities=9% Similarity=0.017 Sum_probs=56.2
Q ss_pred HHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHH
Q 042593 144 PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGK 222 (352)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~ 222 (352)
.-+-..|++++|..+|+-+.-.+.. +..-|..|..++-..+++++|...|...... .-|+..+-..-.++...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~--n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY--NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 3344667777777777777765544 5556666777777777777777777653222 223333444556677777777
Q ss_pred HHHHHHHHHHh
Q 042593 223 EAVENFERMQK 233 (352)
Q Consensus 223 ~a~~~~~~m~~ 233 (352)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 77777777666
No 230
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.31 E-value=0.14 Score=42.55 Aligned_cols=99 Identities=11% Similarity=0.087 Sum_probs=74.5
Q ss_pred HHHHHhccCC--CCCchhHHHHHHHHHhHHHHHHHHH-----hcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhC
Q 042593 77 DSSKLFDELP--ERNLVTWNVIITGLVKWTGIIDGYS-----RMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149 (352)
Q Consensus 77 ~a~~~~~~m~--~~~~~~~~~~i~~~~~~~~li~~~~-----~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~ 149 (352)
..++.|.... ++|..+ |-..+..+. +.+.++-...-++.| +..|+.-|..+|+.|++.+-+.
T Consensus 52 ~~e~~F~aa~~~~RdK~s----------fl~~V~~F~E~sVr~R~HveFIy~ALk~m-~eyGVerDl~vYk~LlnvfPKg 120 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDS----------FLAAVATFKEKSVRGRTHVEFIYTALKYM-KEYGVERDLDVYKGLLNVFPKG 120 (406)
T ss_pred chhhhhhccCcccccHHH----------HHHHHHHHHHhhhcccchHHHHHHHHHHH-HHhcchhhHHHHHHHHHhCccc
Confidence 3455666655 355555 444444443 345677777778889 9999999999999999988665
Q ss_pred CC----------------hhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCC
Q 042593 150 GE----------------VRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC 187 (352)
Q Consensus 150 ~~----------------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 187 (352)
.- -.-+.+++++|...|+.| |..+-..|++++++.+-
T Consensus 121 kfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmP-dkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 121 KFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMP-DKEIEDILVNAFGRWNF 173 (406)
T ss_pred ccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCC-chHHHHHHHHHhccccc
Confidence 42 244779999999999999 99999999999998875
No 231
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.31 E-value=1.4 Score=36.42 Aligned_cols=172 Identities=15% Similarity=0.067 Sum_probs=114.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEP-SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 181 (352)
|+.-+ .-.+.|++++|.+.|+.+..+....| ...+...++.++-+.++.+.|....++....-... ...-|..-|.+
T Consensus 38 Y~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~-~n~dY~~Ylkg 115 (254)
T COG4105 38 YNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH-PNADYAYYLKG 115 (254)
T ss_pred HHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC-CChhHHHHHHH
Confidence 44433 35678999999999999955544433 34477788888889999999999999998876665 44556666666
Q ss_pred HHhh-------CChHHHHHHHH---HhccCCCCH------hh-----------H-HHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 182 YAKC-------GCIFSASKLFE---DTSVDRKNL------VS-----------W-TTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 182 ~~~~-------g~~~~a~~~~~---~~~~~~~~~------~~-----------~-~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
++.- .|...+.+-|. ++...-||. .. + -.+...|.+.|.+..|..-+++|++
T Consensus 116 Ls~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e 195 (254)
T COG4105 116 LSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLE 195 (254)
T ss_pred HHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 6642 34444444444 443333432 11 1 1234568888999999999999888
Q ss_pred cCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCch
Q 042593 234 VGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVV 299 (352)
Q Consensus 234 ~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 299 (352)
. -| ...-.....-.+..+|...|-.++|.+.-.-+....|+..
T Consensus 196 ~--y~---------------------~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 196 N--YP---------------------DTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred c--cc---------------------cccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 5 11 1112344566788899999999999887776665544443
No 232
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.31 E-value=1.8 Score=37.92 Aligned_cols=183 Identities=15% Similarity=0.069 Sum_probs=109.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh--hHHHHHHHHH--h-CCChhhHHHHHHHHHhcCCCCCchhhHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI--TILAVLPAIW--K-NGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--t~~~ll~~~~--~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 177 (352)
+.+.+...|..|||+.|+++++.-....-+.++.. .-..++.+-+ . ..+...|...-.+..+.... -...--.
T Consensus 191 ~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pd--lvPaav~ 268 (531)
T COG3898 191 ARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPD--LVPAAVV 268 (531)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCc--cchHHHH
Confidence 77889999999999999999998755555667654 2233333322 1 12344455554444444322 2333345
Q ss_pred HHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCcchhh------------
Q 042593 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV-GLKPNRSWRI------------ 244 (352)
Q Consensus 178 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~------------ 244 (352)
-..++.+.|++.++-.+++.+-+..|.+..+..-+ +.+.|+ .+..-+++..+. .++||..--.
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~--~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e 344 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEPHPDIALLYV--RARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGE 344 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHH--HhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccc
Confidence 56788999999999999999877766665544322 345554 444444444432 3556543332
Q ss_pred hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHH-cCChhHHHHHHhcCCCC
Q 042593 245 GEEGLKFFDKMVEECEVLPDIKHYGCLIDILER-AGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 245 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~ 294 (352)
+..|..--+... ...|....|..|.+.-.. .||-.++...+-+....
T Consensus 345 ~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 345 FSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 222222222221 456777888877776654 49999888887665443
No 233
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.26 E-value=0.69 Score=43.48 Aligned_cols=129 Identities=12% Similarity=-0.041 Sum_probs=69.0
Q ss_pred CCchhhHHHHHHHHHhcCChhHHHHHhccCCC-CCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC
Q 042593 56 QSHVYVNTALGDMYVSLGFLKDSSKLFDELPE-RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134 (352)
Q Consensus 56 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p 134 (352)
.|.+..|..|.......-.++-|+..|-+... +++...--+-.-+..=-.-...-+--|++++|.++|-+| .+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~-drrD--- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDA-DRRD--- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhcc-chhh---
Confidence 47888899888888888888888888887764 332110000000000000001112247888888888888 4332
Q ss_pred ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCC---chhhHHHHHHHHHhhCChHHHHHHHHH
Q 042593 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF---DIHVSNCLIDTYAKCGCIFSASKLFED 197 (352)
Q Consensus 135 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~ 197 (352)
..+....+.||+-.+.++++. -|-... -...|+.+.+.+.....++.|.+.+..
T Consensus 765 ------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 234555566776555444432 221110 123555666666666666666655554
No 234
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.14 E-value=2.8 Score=39.88 Aligned_cols=129 Identities=12% Similarity=0.102 Sum_probs=95.4
Q ss_pred HHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhc
Q 042593 120 LALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199 (352)
Q Consensus 120 ~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 199 (352)
+.+.+.+..+.|..-..-+.+--+.-+...|+...|.++-.+.+ .| +...|-.-+.+++..+++++-+++-+..+
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ip-dKr~~wLk~~aLa~~~kweeLekfAkskk 742 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IP-DKRLWWLKLTALADIKKWEELEKFAKSKK 742 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----Cc-chhhHHHHHHHHHhhhhHHHHHHHHhccC
Confidence 33444444444544555567777778888999999988877653 23 88889999999999999999888777553
Q ss_pred cCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcC
Q 042593 200 VDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG 279 (352)
Q Consensus 200 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 279 (352)
.+.-|.-...+|.+.|+.++|..++.+.-. . + -.+.+|.+.|
T Consensus 743 ----sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------------------------l---~----ekv~ay~~~~ 784 (829)
T KOG2280|consen 743 ----SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------------------------L---Q----EKVKAYLRVG 784 (829)
T ss_pred ----CCCCchhHHHHHHhcccHHHHhhhhhccCC---------------------------h---H----HHHHHHHHhc
Confidence 267788899999999999999988876432 1 1 4577888888
Q ss_pred ChhHHHHHHhcC
Q 042593 280 RLEQAEEVASGI 291 (352)
Q Consensus 280 ~~~~A~~~~~~m 291 (352)
++.+|.++--+-
T Consensus 785 ~~~eAad~A~~~ 796 (829)
T KOG2280|consen 785 DVKEAADLAAEH 796 (829)
T ss_pred cHHHHHHHHHHh
Confidence 888887765443
No 235
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.04 E-value=0.39 Score=35.81 Aligned_cols=78 Identities=9% Similarity=-0.073 Sum_probs=54.4
Q ss_pred HHHHhcCCHHHHHHHHHHhHhccCCCCC-hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhC
Q 042593 108 DGYSRMNRSNEALALFRRMAACEYTEPS-EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG 186 (352)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 186 (352)
....+.|++++|.+.|+.+.......|- ...-..++.++.+.+++++|...+++..+..... ...-|...+.+++.-.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~h-p~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTH-PNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-CCccHHHHHHHHHHHH
Confidence 3455778899999998888444332222 3366778888888899999998888888887765 4455666666655443
No 236
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.99 E-value=0.032 Score=42.15 Aligned_cols=131 Identities=10% Similarity=0.040 Sum_probs=91.3
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHH
Q 042593 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGI 106 (352)
Q Consensus 27 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~l 106 (352)
...++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++....-| ...+
T Consensus 10 ~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~yd-------------~~~~ 76 (143)
T PF00637_consen 10 ISEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNNYD-------------LDKA 76 (143)
T ss_dssp SCCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSSS--------------CTHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccccC-------------HHHH
Confidence 345678888899999999999999987766778899999999999999999999999554322 4456
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhC
Q 042593 107 IDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG 186 (352)
Q Consensus 107 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 186 (352)
+..|.+.|.+++|.-++.++ ....-..+ .+...++++.|.++... . . +..+|..+++.+...+
T Consensus 77 ~~~c~~~~l~~~a~~Ly~~~-~~~~~al~---------i~~~~~~~~~a~e~~~~---~---~-~~~l~~~l~~~~l~~~ 139 (143)
T PF00637_consen 77 LRLCEKHGLYEEAVYLYSKL-GNHDEALE---------ILHKLKDYEEAIEYAKK---V---D-DPELWEQLLKYCLDSK 139 (143)
T ss_dssp HHHHHTTTSHHHHHHHHHCC-TTHTTCSS---------TSSSTHCSCCCTTTGGG---C---S-SSHHHHHHHHHHCTST
T ss_pred HHHHHhcchHHHHHHHHHHc-ccHHHHHH---------HHHHHccHHHHHHHHHh---c---C-cHHHHHHHHHHHHhcC
Confidence 67788888888888888887 43221111 13344566666633332 1 2 5677888887776665
Q ss_pred C
Q 042593 187 C 187 (352)
Q Consensus 187 ~ 187 (352)
+
T Consensus 140 ~ 140 (143)
T PF00637_consen 140 P 140 (143)
T ss_dssp C
T ss_pred c
Confidence 4
No 237
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.76 E-value=0.74 Score=41.31 Aligned_cols=63 Identities=8% Similarity=-0.125 Sum_probs=47.5
Q ss_pred hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCch---hhHHHHHHHHHhhCChHHHHHHHHHhcc
Q 042593 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDI---HVSNCLIDTYAKCGCIFSASKLFEDTSV 200 (352)
Q Consensus 136 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~ 200 (352)
...++.+..++.+.|++++|...+++..+.+.. +. .+|..+..+|...|+.++|.+.+++...
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd--~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPN--PDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 446778888888888888888888887776544 33 3577888888888888888888887654
No 238
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.67 E-value=0.015 Score=50.58 Aligned_cols=254 Identities=11% Similarity=0.065 Sum_probs=147.9
Q ss_pred HHHHHhcCChhHHHHHhccCCC---CCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHh---HhccCCCC-Chhh
Q 042593 66 GDMYVSLGFLKDSSKLFDELPE---RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM---AACEYTEP-SEIT 138 (352)
Q Consensus 66 i~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m---~~~~~~~p-~~~t 138 (352)
..-+|+.|+.+....+|+...+ .|..+.+++ |..|-++|.-.+++++|++.-..= .+.-|-+. ....
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAI------YsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKs 97 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAI------YSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKS 97 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHH------HHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccc
Confidence 3457899999999999998876 455554444 999999999999999999864321 01111111 1122
Q ss_pred HHHHHHHHHhCCChhhHHHH----HHHHHhcCCCCCchhhHHHHHHHHHhhC--------------------ChHHHHHH
Q 042593 139 ILAVLPAIWKNGEVRNCQLI----HGYGEKRGFNAFDIHVSNCLIDTYAKCG--------------------CIFSASKL 194 (352)
Q Consensus 139 ~~~ll~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~li~~~~~~g--------------------~~~~a~~~ 194 (352)
-..+-+.+.-.|.+++|.-. +.-..+.|-.......+-.+.+.|...| .++.|.++
T Consensus 98 sgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f 177 (639)
T KOG1130|consen 98 SGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF 177 (639)
T ss_pred cccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH
Confidence 23344444455666655422 2222233322212334445556665444 24567777
Q ss_pred HHH---hccC----CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHH----hcCCCC----------Ccchhh--hHhHHHH
Q 042593 195 FED---TSVD----RKNLVSWTTIISGFAMHGMGKEAVENFERMQ----KVGLKP----------NRSWRI--GEEGLKF 251 (352)
Q Consensus 195 ~~~---~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~p----------~~~~~~--~~~a~~~ 251 (352)
|.+ |... ..--..|..|-..|.-.|+++.|+..-+.-. +-|-+. +...+. ++.|.+.
T Consensus 178 y~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~eh 257 (639)
T KOG1130|consen 178 YMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEH 257 (639)
T ss_pred HHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHH
Confidence 765 2211 1233567777777777888988877655422 122211 112222 6666666
Q ss_pred HHHHHHh---cCC-CCChhhHHHHHHHHHHcCChhHHHHHHhc-------CCCCCCCchhhHHHHHHHHhcccccCcccc
Q 042593 252 FDKMVEE---CEV-LPDIKHYGCLIDILERAGRLEQAEEVASG-------IPSQITNVVVWRTGFLRLLINSYFFSPITL 320 (352)
Q Consensus 252 ~~~m~~~---~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~-------m~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 320 (352)
|..-... .|- ........+|...|.-..++++|...+.+ +........++.+|..+|...|..++|+.+
T Consensus 258 YK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~f 337 (639)
T KOG1130|consen 258 YKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYF 337 (639)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHH
Confidence 6553322 011 11223445677777777788888776543 222255678899999999999999999987
Q ss_pred cccch
Q 042593 321 NSQRL 325 (352)
Q Consensus 321 ~~~~~ 325 (352)
..+.+
T Consensus 338 ae~hl 342 (639)
T KOG1130|consen 338 AELHL 342 (639)
T ss_pred HHHHH
Confidence 77664
No 239
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.58 E-value=1.5 Score=37.68 Aligned_cols=132 Identities=9% Similarity=0.086 Sum_probs=74.8
Q ss_pred cchHHHHHHHHHHhCCCCchhhHHHHHHHHHh--cC----ChhHHHHHhccCCC-------CCchhHHHHHHHHHhHHHH
Q 042593 40 PNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS--LG----FLKDSSKLFDELPE-------RNLVTWNVIITGLVKWTGI 106 (352)
Q Consensus 40 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~-------~~~~~~~~~i~~~~~~~~l 106 (352)
++....+++.|.+.|+..+..+|-+..-.... .. ...+|..+|+.|++ ++-.+ +..+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~----------~a~l 147 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYP----------FAAL 147 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchh----------HHHH
Confidence 34567888999999999888777553333333 12 35568888888875 22233 4444
Q ss_pred HHHHHhcCC----HHHHHHHHHHhHhccCCCCChh-hHHHHHHHHHhCC-C--hhhHHHHHHHHHhcCCCCCchhhHHHH
Q 042593 107 IDGYSRMNR----SNEALALFRRMAACEYTEPSEI-TILAVLPAIWKNG-E--VRNCQLIHGYGEKRGFNAFDIHVSNCL 178 (352)
Q Consensus 107 i~~~~~~~~----~~~a~~~~~~m~~~~~~~p~~~-t~~~ll~~~~~~~-~--~~~a~~~~~~~~~~~~~~~~~~~~~~l 178 (352)
+.. ...+ .+.+...|+.+ ...|...+.. .+.+-+-++.... . ...+..+++.+.+.|+.. ....|. .
T Consensus 148 LA~--~~~~~e~l~~~~E~~Y~~L-~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~ki-k~~~yp-~ 222 (297)
T PF13170_consen 148 LAM--TSEDVEELAERMEQCYQKL-ADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKI-KYMHYP-T 222 (297)
T ss_pred Hhc--ccccHHHHHHHHHHHHHHH-HHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcc-cccccc-H
Confidence 333 2333 34566677777 5556544432 3333333333222 1 346777888888888876 554453 3
Q ss_pred HHHHHhhC
Q 042593 179 IDTYAKCG 186 (352)
Q Consensus 179 i~~~~~~g 186 (352)
+..++-.+
T Consensus 223 lGlLall~ 230 (297)
T PF13170_consen 223 LGLLALLE 230 (297)
T ss_pred HHHHHhcC
Confidence 34444333
No 240
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=94.41 E-value=0.0028 Score=48.00 Aligned_cols=87 Identities=13% Similarity=0.106 Sum_probs=60.3
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCC
Q 042593 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGM 220 (352)
Q Consensus 141 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 220 (352)
.++..+.+.+..+....+++.+.+.+... +....+.++..|++.++.++..++++.... .-...++..|.+.|.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~-~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-----yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKEN-NPDLHTLLLELYIKYDPYEKLLEFLKTSNN-----YDLDKALRLCEKHGL 85 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC--SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-----S-CTHHHHHHHTTTS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhccccc-CHHHHHHHHHHHHhcCCchHHHHHcccccc-----cCHHHHHHHHHhcch
Confidence 45666777788888888888888766555 788888888999988887888877773321 233455666777777
Q ss_pred HHHHHHHHHHHHh
Q 042593 221 GKEAVENFERMQK 233 (352)
Q Consensus 221 ~~~a~~~~~~m~~ 233 (352)
+++|.-++.++-.
T Consensus 86 ~~~a~~Ly~~~~~ 98 (143)
T PF00637_consen 86 YEEAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHHHCCTT
T ss_pred HHHHHHHHHHccc
Confidence 7777777766443
No 241
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.33 E-value=3.4 Score=36.33 Aligned_cols=28 Identities=18% Similarity=0.112 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHhccCC
Q 042593 59 VYVNTALGDMYVSLGFLKDSSKLFDELP 86 (352)
Q Consensus 59 ~~~~~~li~~~~~~g~~~~a~~~~~~m~ 86 (352)
...+.+++...|..|+++.|+++.+.-+
T Consensus 188 ~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 188 PWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred chHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 4567788999999999999999988654
No 242
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.30 E-value=1.1 Score=34.12 Aligned_cols=66 Identities=6% Similarity=-0.085 Sum_probs=29.5
Q ss_pred hCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHH
Q 042593 148 KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGF 215 (352)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~ 215 (352)
+.++.++++.++..+.-..+..+...++. ...+.+.|++.+|.++|+++....|....-..|+..|
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 44455555555555544433321222222 2234455555555555555544444333333333333
No 243
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.27 E-value=0.9 Score=35.69 Aligned_cols=97 Identities=19% Similarity=0.129 Sum_probs=68.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh--hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHH--H
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI--TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC--L 178 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--l 178 (352)
+..+..-|++.|+.++|++.|.++ ......+... .+..+|+.....+++..+...+.+....-....+...-|. .
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~-~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRA-RDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH-hhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 888889999999999999999999 6665555543 6788889999999999999888877654333212222211 1
Q ss_pred HH--HHHhhCChHHHHHHHHHhcc
Q 042593 179 ID--TYAKCGCIFSASKLFEDTSV 200 (352)
Q Consensus 179 i~--~~~~~g~~~~a~~~~~~~~~ 200 (352)
.. .+...|++..|-+.|-+...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCc
Confidence 11 23356789888888877643
No 244
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.23 E-value=0.79 Score=39.29 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=13.3
Q ss_pred HhHHHHHHHHHHhcCCCCChhhHHHH
Q 042593 246 EEGLKFFDKMVEECEVLPDIKHYGCL 271 (352)
Q Consensus 246 ~~a~~~~~~m~~~~~~~p~~~~~~~l 271 (352)
..+.++++.+.+. |+++....|..+
T Consensus 199 ~r~~~l~~~l~~~-~~kik~~~yp~l 223 (297)
T PF13170_consen 199 ARVIELYNALKKN-GVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHc-CCccccccccHH
Confidence 3444555555555 666655555444
No 245
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.19 E-value=2 Score=33.18 Aligned_cols=136 Identities=14% Similarity=0.050 Sum_probs=84.8
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh
Q 042593 58 HVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137 (352)
Q Consensus 58 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 137 (352)
+...|..-++. ++.+..++|+.-|.++.+-+...|..+- --.......+.|+...|..-|+++ ......|-..
T Consensus 58 sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA-----~mr~at~~a~kgdta~AV~aFdei-a~dt~~P~~~ 130 (221)
T COG4649 58 SGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLA-----RMRAATLLAQKGDTAAAVAAFDEI-AADTSIPQIG 130 (221)
T ss_pred chHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHH-----HHHHHHHHhhcccHHHHHHHHHHH-hccCCCcchh
Confidence 34455555543 4567788888888888776655544433 223334567788888888888888 5544445433
Q ss_pred -hHHHHH--HHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC
Q 042593 138 -TILAVL--PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201 (352)
Q Consensus 138 -t~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 201 (352)
-..-+= -.+...|.++.+..-.+-+...+-.. ....-..|--+--+.|++.+|.+.|..+...
T Consensus 131 rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~m-R~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 131 RDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPM-RHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred hHHHHHHHHHHHhccccHHHHHHHhhhccCCCChh-HHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 111121 22446677777777766665544333 4455566766777888888888888887543
No 246
>PRK15331 chaperone protein SicA; Provisional
Probab=94.13 E-value=0.83 Score=35.01 Aligned_cols=92 Identities=11% Similarity=-0.091 Sum_probs=70.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHh
Q 042593 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK 184 (352)
Q Consensus 105 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 184 (352)
.....+-..|++++|..+|.-+ ...+ .-+..-+..|..++-..+++++|...|...-..+.. |+..+--...+|..
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L-~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~--dp~p~f~agqC~l~ 117 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFL-CIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN--DYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH-HHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC--CCCccchHHHHHHH
Confidence 3344556789999999999998 3322 123345666777777889999999999988877654 55556677889999
Q ss_pred hCChHHHHHHHHHhcc
Q 042593 185 CGCIFSASKLFEDTSV 200 (352)
Q Consensus 185 ~g~~~~a~~~~~~~~~ 200 (352)
.|+.+.|.+.|.....
T Consensus 118 l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 118 MRKAAKARQCFELVNE 133 (165)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 9999999999998764
No 247
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.99 E-value=3.1 Score=37.89 Aligned_cols=168 Identities=11% Similarity=-0.054 Sum_probs=83.7
Q ss_pred hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHH
Q 042593 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGF 215 (352)
Q Consensus 136 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~ 215 (352)
.....+++..+.....+.-++.+-.+|...|- +...|..++.+|..+ .-+.-..+|+++....-|-.....-+..+
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e---~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE---SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 33444555555555555555555555555442 344455555555555 33444455554433322222222222222
Q ss_pred HcCCCHHHHHHHHHHHHhcCCCCCcchhh--------------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCh
Q 042593 216 AMHGMGKEAVENFERMQKVGLKPNRSWRI--------------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRL 281 (352)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--------------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 281 (352)
...++.+.+...|......=+......-. .+....+..++....|...-...+.-+-.-|....++
T Consensus 142 yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~ 221 (711)
T COG1747 142 YEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENW 221 (711)
T ss_pred HHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCH
Confidence 22244445555554444321110000000 3344444555555445555566777777888888899
Q ss_pred hHHHHHHhcCCCC-CCCchhhHHHHHH
Q 042593 282 EQAEEVASGIPSQ-ITNVVVWRTGFLR 307 (352)
Q Consensus 282 ~~A~~~~~~m~~~-~~~~~~~~~li~~ 307 (352)
++|.+++..+.++ ..|...-..++.-
T Consensus 222 ~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 222 TEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred HHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 9999998877666 4455555555543
No 248
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.91 E-value=4.6 Score=36.29 Aligned_cols=115 Identities=14% Similarity=0.079 Sum_probs=73.7
Q ss_pred ChHHHHHHHHHhccCC-CCHhhHHHHHH----HHH---cCCCHHHHHHHHHHHHhcCCCCCcchhh-----hHhHHHHHH
Q 042593 187 CIFSASKLFEDTSVDR-KNLVSWTTIIS----GFA---MHGMGKEAVENFERMQKVGLKPNRSWRI-----GEEGLKFFD 253 (352)
Q Consensus 187 ~~~~a~~~~~~~~~~~-~~~~~~~~li~----~~~---~~~~~~~a~~~~~~m~~~~~~p~~~~~~-----~~~a~~~~~ 253 (352)
.-++|.++++.+.... -|...=|.+.. +|. ....+.+-..+-+-+.+.|++|-...-. ..+|..+|.
T Consensus 395 ~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 395 CDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred ccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 3778888888876653 35544443322 222 2234566666666677788877654433 444444332
Q ss_pred H----------HHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHH
Q 042593 254 K----------MVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGF 305 (352)
Q Consensus 254 ~----------m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li 305 (352)
. +--. .+.|++.+|..+.-++....++++|+..+..+. ||..+|++-+
T Consensus 475 qgey~kc~~ys~WL~-~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP---~n~~~~dskv 532 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLT-KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP---PNERMRDSKV 532 (549)
T ss_pred cccHHHHHHHHHHHH-HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC---CchhhHHHHH
Confidence 1 1111 578999999999999999999999999999886 4666665533
No 249
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.90 E-value=1.6 Score=36.31 Aligned_cols=97 Identities=15% Similarity=0.086 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCC-CchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC----CHhhHHHH
Q 042593 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNA-FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK----NLVSWTTI 211 (352)
Q Consensus 137 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~l 211 (352)
..|+.-+. +.+.|++..|...|....+..... .....+-=|.+++...|++++|..+|..+.+..| -+..+-.|
T Consensus 143 ~~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 35666555 457788999999999999875431 0223344588999999999999999999876633 34677888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhc
Q 042593 212 ISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 212 i~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
..+..+.|+.++|..+|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 88999999999999999999875
No 250
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.82 E-value=4.5 Score=35.81 Aligned_cols=70 Identities=6% Similarity=-0.072 Sum_probs=48.7
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhC---CCCchhhHHHHHHHHHh---cCChhHHHHHhccCC-C---CCchh
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG---FQSHVYVNTALGDMYVS---LGFLKDSSKLFDELP-E---RNLVT 92 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~-~---~~~~~ 92 (352)
+..+.-.++-+|....+++...++.+.+.... +.-++..--...-++.+ .|+.++|++++..+. + ++..+
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 44555566778999999999999999998752 22233333344556667 899999999998843 2 45556
No 251
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.79 E-value=2.8 Score=33.44 Aligned_cols=199 Identities=14% Similarity=0.023 Sum_probs=80.1
Q ss_pred cHHHHHHHHHhcCCcchHHHHHHHHHHh-CCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHH
Q 042593 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKV-GFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWT 104 (352)
Q Consensus 26 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~ 104 (352)
.+......+...+.+..+...+...... ........+......+...++...+.+.+......+...... ..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 133 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLA-------EA 133 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchH-------HH
Confidence 3444444444455555444444444331 112233344444444444444555555555443311100000 11
Q ss_pred HHHH-HHHhcCCHHHHHHHHHHhHhccCC--CCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 042593 105 GIID-GYSRMNRSNEALALFRRMAACEYT--EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181 (352)
Q Consensus 105 ~li~-~~~~~~~~~~a~~~~~~m~~~~~~--~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 181 (352)
.... .+...|+++.|...+.+. ..... ......+......+...++.+.+...+....+..... ....+..+...
T Consensus 134 ~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~ 211 (291)
T COG0457 134 LLALGALYELGDYEEALELYEKA-LELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-DAEALLNLGLL 211 (291)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-HhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-chHHHHHhhHH
Confidence 1111 444555555555555554 11110 0111222222223344455555555555544443221 23344444445
Q ss_pred HHhhCChHHHHHHHHHhccCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 182 YAKCGCIFSASKLFEDTSVDRKN-LVSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 182 ~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
+...++.+.|...+.......|+ ...+..+...+...+..+++...+.+...
T Consensus 212 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 212 YLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555554433333 22222222222244444555444444443
No 252
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.72 E-value=0.65 Score=39.09 Aligned_cols=64 Identities=13% Similarity=0.223 Sum_probs=56.3
Q ss_pred chhhHHHHHHHHHhhCChHHHHHHHHHhccCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR-KNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
-..++..++..+...|+.+.+.+.++++.... -+...|..+|.+|.+.|+...|...|+.+.+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 35567788999999999999999999987664 48899999999999999999999999998873
No 253
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.72 E-value=0.076 Score=30.71 Aligned_cols=40 Identities=18% Similarity=0.220 Sum_probs=31.3
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHH
Q 042593 266 KHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGF 305 (352)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li 305 (352)
.++..+...|...|++++|.+++++.... +.|...|..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 35677889999999999999999998877 55556665543
No 254
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.69 E-value=2.1 Score=31.52 Aligned_cols=129 Identities=8% Similarity=0.030 Sum_probs=59.9
Q ss_pred HhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC-CCchhHH---HHHHHHH-------hH
Q 042593 35 VTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE-RNLVTWN---VIITGLV-------KW 103 (352)
Q Consensus 35 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~---~~i~~~~-------~~ 103 (352)
.-.|.+++..++........ +..-+|-+|.-....-+-+-..+.++.+-+ -|..... .++.+++ ..
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~v 89 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYV 89 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHH
Confidence 34678888888888777653 344455555444444444444444444432 1111100 0000000 13
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCC
Q 042593 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN 168 (352)
Q Consensus 104 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 168 (352)
+..++.....|+-+...++++++ .. +-++++.....+..||.+.|+..++.+++.+..+.|+.
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l-~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNEL-KK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHhccHHHHHHHHHHH-hh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44455555566666666666655 22 22455555556666666666666666666666666543
No 255
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.67 E-value=0.19 Score=28.95 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=14.9
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHhccCCC
Q 042593 175 SNCLIDTYAKCGCIFSASKLFEDTSVDRK 203 (352)
Q Consensus 175 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 203 (352)
+..+..+|...|++++|.++|++..+..|
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 44455555555555555555555544433
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.61 E-value=2.8 Score=38.09 Aligned_cols=79 Identities=11% Similarity=0.018 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC-CCC--HhhHHHHH
Q 042593 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-RKN--LVSWTTII 212 (352)
Q Consensus 136 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~--~~~~~~li 212 (352)
..+-..+..++.+.|+.++|.+.++++.+.........+...|+.++...+.+.++..++.+-.+. -|. ...|+..+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 334445667777899999999999999865433214557788999999999999999999887543 233 45677655
Q ss_pred HH
Q 042593 213 SG 214 (352)
Q Consensus 213 ~~ 214 (352)
--
T Consensus 339 Lk 340 (539)
T PF04184_consen 339 LK 340 (539)
T ss_pred HH
Confidence 43
No 257
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.58 E-value=2.1 Score=33.63 Aligned_cols=99 Identities=17% Similarity=0.060 Sum_probs=68.3
Q ss_pred hhhHHHHHHHHHhhCChHHHHHHHHHhccCC----CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHh
Q 042593 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVDR----KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEE 247 (352)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~ 247 (352)
...+..+.+.|++.|+.+.|.+.|.++.... .-...+-.+|......+++..+.....+....-..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~---------- 105 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK---------- 105 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc----------
Confidence 4567788999999999999999999986652 23455677888888999999999888887663111
Q ss_pred HHHHHHHHHHhcCCCCC----hhhHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 248 GLKFFDKMVEECEVLPD----IKHYGCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 248 a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
+-.++ ...|..| .+...|++.+|-+.|-+....
T Consensus 106 ------------~~d~~~~nrlk~~~gL--~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 106 ------------GGDWERRNRLKVYEGL--ANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred ------------cchHHHHHHHHHHHHH--HHHHhchHHHHHHHHHccCcC
Confidence 11111 2233322 234578999998888766544
No 258
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.56 E-value=3 Score=37.41 Aligned_cols=120 Identities=10% Similarity=-0.035 Sum_probs=78.9
Q ss_pred HHhcCCHHHHHHHHHHhHhccCCCCC----hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH--H
Q 042593 110 YSRMNRSNEALALFRRMAACEYTEPS----EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY--A 183 (352)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~--~ 183 (352)
+-+.++..+|.++|.+.-++..-.|. ...-+.+++||.. .+++.....+.+..+.... ..|-.+..++ -
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~----s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGK----SAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCC----chHHHHHHHHHHH
Confidence 45678999999999998333222222 2345577888765 5677777777777654322 2233333332 3
Q ss_pred hhCChHHHHHHHHHhccC-----C-----------CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 184 KCGCIFSASKLFEDTSVD-----R-----------KNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 184 ~~g~~~~a~~~~~~~~~~-----~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
+.+++++|.+.+...... . +|...-++.++++...|++.++..++++|...
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 677888888887664332 1 22233467788999999999999999998875
No 259
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.35 E-value=4.7 Score=40.60 Aligned_cols=30 Identities=17% Similarity=0.174 Sum_probs=21.1
Q ss_pred CCchhhHHHHHHHHHhcC--ChhHHHHHhccCC
Q 042593 56 QSHVYVNTALGDMYVSLG--FLKDSSKLFDELP 86 (352)
Q Consensus 56 ~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~ 86 (352)
.|+ .-.-.+|.+|.+.+ .++.|+....+..
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 455 44556788888887 6777777777766
No 260
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.21 E-value=2.1 Score=37.68 Aligned_cols=96 Identities=11% Similarity=0.067 Sum_probs=45.6
Q ss_pred HHHHHhcCChhHHHHHhccCCC--------CCch--hHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC
Q 042593 66 GDMYVSLGFLKDSSKLFDELPE--------RNLV--TWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS 135 (352)
Q Consensus 66 i~~~~~~g~~~~a~~~~~~m~~--------~~~~--~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 135 (352)
.+.|.+.|++..|...|+.... ++.. ....+... .++.+.-++.+.+++.+|+..-++.+... ++|
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~--~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N 290 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLA--CHLNLAACYLKLKEYKEAIESCNKVLELD--PNN 290 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHH--HhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCc
Confidence 3456678888888777776432 0000 00000000 14455555555555555555555442211 233
Q ss_pred hhhHHHHHHHHHhCCChhhHHHHHHHHHhc
Q 042593 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKR 165 (352)
Q Consensus 136 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 165 (352)
....---..++...|+++.|...|+.+.+.
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 334444444555555555555555555544
No 261
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.08 E-value=3.3 Score=32.07 Aligned_cols=131 Identities=14% Similarity=0.077 Sum_probs=73.4
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhH---HHHHH-
Q 042593 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSW---TTIIS- 213 (352)
Q Consensus 138 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~li~- 213 (352)
+|..-++ +++.+..++|+.-|..+.+.|......-.--.........|+...|...|+++-...|-+... ..|=.
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 4444444 345566777777777777776553111122223344566778888888888876553322222 11111
Q ss_pred -HHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCC
Q 042593 214 -GFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292 (352)
Q Consensus 214 -~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 292 (352)
.+..+|-++......+-+-.. +-+.-...-..|.-+-.+.|++.+|.+.|..+.
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d-------------------------~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGD-------------------------GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHhccccHHHHHHHhhhccCC-------------------------CChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 245666666666555544332 212223334566667778888888888887776
Q ss_pred CC
Q 042593 293 SQ 294 (352)
Q Consensus 293 ~~ 294 (352)
..
T Consensus 195 ~D 196 (221)
T COG4649 195 ND 196 (221)
T ss_pred cc
Confidence 55
No 262
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.69 E-value=2.9 Score=30.70 Aligned_cols=90 Identities=12% Similarity=0.035 Sum_probs=61.3
Q ss_pred HHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC-CCCH-h---hHHHHHHHHHcCC
Q 042593 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNL-V---SWTTIISGFAMHG 219 (352)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~-~---~~~~li~~~~~~~ 219 (352)
+++..|++++|.+.|.+....-.. ....||.-..++.-.|+.++|++=+++...- .+.. . .|-.--..|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~--raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE--RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc--chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 466778888888888877665433 7778888888888888888888777765433 2222 1 2222233466778
Q ss_pred CHHHHHHHHHHHHhcCC
Q 042593 220 MGKEAVENFERMQKVGL 236 (352)
Q Consensus 220 ~~~~a~~~~~~m~~~~~ 236 (352)
+.+.|..=|+...+.|-
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 88888888888777664
No 263
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.10 E-value=2 Score=37.80 Aligned_cols=124 Identities=9% Similarity=-0.089 Sum_probs=79.1
Q ss_pred HHHHhcCCHHHHHHHHHHhHhc----cCCCC---------ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhh
Q 042593 108 DGYSRMNRSNEALALFRRMAAC----EYTEP---------SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHV 174 (352)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~m~~~----~~~~p---------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 174 (352)
+.+.+.|++..|...|++.... .+..+ -...++.+.-++.+.+++..|...-...+..+.. |...
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~--N~KA 293 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN--NVKA 293 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC--chhH
Confidence 4577889999999888875221 11111 1224666677777888888888777777766544 5555
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhH-HHHHHHHHcCCCH-HHHHHHHHHHHh
Q 042593 175 SNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSW-TTIISGFAMHGMG-KEAVENFERMQK 233 (352)
Q Consensus 175 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~li~~~~~~~~~-~~a~~~~~~m~~ 233 (352)
.-.-..+|...|+++.|+..|+.+.+..|+-..- +-|+..--+.... +...++|..|..
T Consensus 294 LyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 294 LYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566778888888888888888887766644333 3344333333333 344667777755
No 264
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=91.95 E-value=6.9 Score=33.08 Aligned_cols=113 Identities=12% Similarity=0.088 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhHhccCCCCChhhHHHHHHHHHh-CC-ChhhHHHHHHHHHhc-CCCCCchhhHHHHHHHHHhhCChHHHH
Q 042593 116 SNEALALFRRMAACEYTEPSEITILAVLPAIWK-NG-EVRNCQLIHGYGEKR-GFNAFDIHVSNCLIDTYAKCGCIFSAS 192 (352)
Q Consensus 116 ~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~-~~-~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~ 192 (352)
+.+|+++|+...-+..+--|..+...+++.... .+ ....-.++.+.+... +-.+ +..+...+|+.+++.+++.+-.
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l-~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSL-TRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCC-ChhHHHHHHHHHHhcccHHHHH
Confidence 445566666431113344555555666665554 11 222223333333322 2333 5666666677777777777777
Q ss_pred HHHHHhccC---CCCHhhHHHHHHHHHcCCCHHHHHHHHH
Q 042593 193 KLFEDTSVD---RKNLVSWTTIISGFAMHGMGKEAVENFE 229 (352)
Q Consensus 193 ~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~ 229 (352)
++++..... ..|...|..+|..-...|+..-...+.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 776664433 3366667777777777776654444443
No 265
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.92 E-value=7 Score=34.73 Aligned_cols=174 Identities=7% Similarity=-0.111 Sum_probs=96.2
Q ss_pred CcccHHHHH-HHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHH--HhcCChhHHHHHhccCCC--CCchh---HH
Q 042593 23 DSFTYSFLI-RTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY--VSLGFLKDSSKLFDELPE--RNLVT---WN 94 (352)
Q Consensus 23 ~~~~~~~ll-~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~--~~~~~---~~ 94 (352)
.-.++..+- ..+.-.|+.++|.++--...+.. ..+. +..+++.. --.++.+.|...|++-.. |+... -.
T Consensus 167 ac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~--~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~ 243 (486)
T KOG0550|consen 167 ACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNA--EALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSAS 243 (486)
T ss_pred hhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchh--HHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHh
Confidence 334444443 23345788888887755444433 2222 33334433 345788899999998775 33221 11
Q ss_pred HHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhc--cCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCch
Q 042593 95 VIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC--EYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDI 172 (352)
Q Consensus 95 ~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 172 (352)
-..+.+-.|..-.+-..+.|.+..|.+.|.+.... .++.|+...|.....+..+.|+.++|..--++..+.... -+
T Consensus 244 ~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s--yi 321 (486)
T KOG0550|consen 244 MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS--YI 321 (486)
T ss_pred hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH--HH
Confidence 11122223444445566778888888888877332 223444555666666777788888877766666554211 22
Q ss_pred hhHHHHHHHHHhhCChHHHHHHHHHhccC
Q 042593 173 HVSNCLIDTYAKCGCIFSASKLFEDTSVD 201 (352)
Q Consensus 173 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 201 (352)
..+..-.+++...+++++|.+-|+...+.
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 23333334445556777777777665443
No 266
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.90 E-value=0.43 Score=26.08 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=19.0
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042593 207 SWTTIISGFAMHGMGKEAVENFERMQ 232 (352)
Q Consensus 207 ~~~~li~~~~~~~~~~~a~~~~~~m~ 232 (352)
+|+.|...|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46677778888888888888888754
No 267
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.74 E-value=7.4 Score=32.97 Aligned_cols=124 Identities=12% Similarity=0.121 Sum_probs=85.4
Q ss_pred HHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCC
Q 042593 108 DGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC 187 (352)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 187 (352)
......|+..+|..+|........ -+...-..+..++...|+.+.|..++..+-..--.. .......-|..+.+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~--~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~-~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAP--ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDK-AAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCc--ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhh-HHHHHHHHHHHHHHHhc
Confidence 345677888888888888744322 234566778888889999999999988775443222 23333345666777776
Q ss_pred hHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 188 IFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 188 ~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
..+...+-...-..+-|...--.+...+...|+.++|.+.+=.+.+.
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666444557777778888888999998888877766654
No 268
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=91.67 E-value=0.25 Score=26.69 Aligned_cols=32 Identities=9% Similarity=0.178 Sum_probs=24.3
Q ss_pred HHHHHHhCCCCchhhHHHHHHHHHhcCChhHHH
Q 042593 47 HAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79 (352)
Q Consensus 47 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 79 (352)
|+..++.. |-|...|+.|...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34445544 557888999999999999998886
No 269
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.37 E-value=7.4 Score=32.25 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=44.9
Q ss_pred HHHHHHHhhCChHHHHHHHHHhccCCCC----HhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 177 CLIDTYAKCGCIFSASKLFEDTSVDRKN----LVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 177 ~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
.+.+.|.+.|.+..|..-+++|.+..|+ ....-.+..+|-..|..++|...-+-+...
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 5567788999999999999998877443 245666778899999988888877766653
No 270
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.24 E-value=4.5 Score=30.45 Aligned_cols=54 Identities=11% Similarity=-0.034 Sum_probs=29.3
Q ss_pred HhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcC
Q 042593 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRG 166 (352)
Q Consensus 111 ~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 166 (352)
...++++++..+++.|.....-.|...++...+ +...|++++|.++++++.+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 346666666666666633222222333444443 455666666666666666554
No 271
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.10 E-value=7 Score=35.66 Aligned_cols=75 Identities=9% Similarity=0.012 Sum_probs=53.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHH
Q 042593 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179 (352)
Q Consensus 105 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 179 (352)
.+..++-+.|+.++|.+.|.+|.+.....-+......++.++...+.+.++..++.+-.+...+..-...|+..+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 355666788999999999999955443222344778899999999999999999998765443321345666544
No 272
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.07 E-value=2.4 Score=36.13 Aligned_cols=106 Identities=12% Similarity=0.063 Sum_probs=78.8
Q ss_pred HhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC-CCch---hHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhH
Q 042593 52 KVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE-RNLV---TWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMA 127 (352)
Q Consensus 52 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~---~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 127 (352)
..|.+.+..+...++..-....++++++..+-++.. |+.. .|+ -...++ .+-.-+.++++.++..=
T Consensus 57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~--------~~~~ir-lllky~pq~~i~~l~np- 126 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT--------IHTWIR-LLLKYDPQKAIYTLVNP- 126 (418)
T ss_pred hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc--------HHHHHH-HHHccChHHHHHHHhCc-
Confidence 345566777888888888888899999998888764 2211 011 111222 23345677888888877
Q ss_pred hccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCC
Q 042593 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF 167 (352)
Q Consensus 128 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 167 (352)
...|+-||.+++..++..+.+.+++.+|.++.-.|.....
T Consensus 127 IqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 127 IQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred chhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999998888876653
No 273
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.71 E-value=0.53 Score=25.71 Aligned_cols=24 Identities=8% Similarity=0.191 Sum_probs=17.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHh
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRM 126 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m 126 (352)
|+.|...|.+.|++++|.++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 667777777888888888877774
No 274
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.69 E-value=9.7 Score=32.42 Aligned_cols=154 Identities=8% Similarity=-0.010 Sum_probs=95.8
Q ss_pred HhcCCHHHHHHHHHHhHhcc-CCCCChh-----hHHHHHHHHHhCC-ChhhHHHHHHHHHhc----C----CCCC----c
Q 042593 111 SRMNRSNEALALFRRMAACE-YTEPSEI-----TILAVLPAIWKNG-EVRNCQLIHGYGEKR----G----FNAF----D 171 (352)
Q Consensus 111 ~~~~~~~~a~~~~~~m~~~~-~~~p~~~-----t~~~ll~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~----~ 171 (352)
.+.|+.+.|..++.+..... ...|+.. .+..+.......+ +++.|...+++..+. + ..+. .
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 46799999999999984333 3445432 2223333344555 888877666665443 1 1120 1
Q ss_pred hhhHHHHHHHHHhhCChH---HHHHHHHHhccCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh---
Q 042593 172 IHVSNCLIDTYAKCGCIF---SASKLFEDTSVDRKN-LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI--- 244 (352)
Q Consensus 172 ~~~~~~li~~~~~~g~~~---~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--- 244 (352)
..+...++.+|...+..+ +|.++++.+....|+ +.++-.-+..+.+.++.+++.+.+.+|...-..++...-.
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 346667788888777654 566677777655565 5556566777778999999999999999874323322211
Q ss_pred ---------hHhHHHHHHHHHHhcCCCCCh
Q 042593 245 ---------GEEGLKFFDKMVEECEVLPDI 265 (352)
Q Consensus 245 ---------~~~a~~~~~~m~~~~~~~p~~ 265 (352)
...+...++.+... .+.|..
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~-r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLN-RFKSSE 192 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHH-HhCCCh
Confidence 55666666666655 555544
No 275
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.60 E-value=11 Score=32.73 Aligned_cols=48 Identities=8% Similarity=-0.038 Sum_probs=21.8
Q ss_pred hCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHH
Q 042593 148 KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197 (352)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 197 (352)
..|-+++|++.-++..+.+.. |.-.-.++...+--.|+..++.++..+
T Consensus 187 E~g~y~dAEk~A~ralqiN~~--D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQINRF--DCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HhccchhHHHHHHhhccCCCc--chHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 445555555554444443322 333334444444444555555544444
No 276
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.52 E-value=9.9 Score=32.25 Aligned_cols=53 Identities=9% Similarity=0.085 Sum_probs=30.0
Q ss_pred HHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC
Q 042593 34 CVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE 87 (352)
Q Consensus 34 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 87 (352)
....|++.+|..+|....... +-+...--.+..+|...|+.+.|..++..++.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 344556666666666555543 22344444556666666666666666666653
No 277
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.50 E-value=7.5 Score=33.58 Aligned_cols=116 Identities=14% Similarity=0.005 Sum_probs=65.6
Q ss_pred hcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhc-CCCC-CchhhHHHHHHHHHhhCChH
Q 042593 112 RMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR-GFNA-FDIHVSNCLIDTYAKCGCIF 189 (352)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~~li~~~~~~g~~~ 189 (352)
..|++.+|-..+++++++ .+-|...+.-.=.+|.-.|+.+.-...++.+.-. +... -...+-..+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 456677777777777333 2345666777777777777777777777766533 2111 02223334444556777888
Q ss_pred HHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHH
Q 042593 190 SASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFE 229 (352)
Q Consensus 190 ~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~ 229 (352)
+|++.-++..+. +-|.-.-.++.+.+-.+|+++++.+++.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 887777765443 2344444444444444455544444443
No 278
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.26 E-value=2.2 Score=31.30 Aligned_cols=89 Identities=10% Similarity=0.026 Sum_probs=46.4
Q ss_pred HHHhcCChhHHHHHhccCCC---CCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh--hHHHH
Q 042593 68 MYVSLGFLKDSSKLFDELPE---RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI--TILAV 142 (352)
Q Consensus 68 ~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--t~~~l 142 (352)
+.+..|+++.|++.|.+... .+... ||.-..++--.|+.++|++=+++.....|-+--.. .|..-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSa----------yNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQR 121 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASA----------YNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQR 121 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHh----------hccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence 34556666666666665443 23333 66666666666666666666666544444321111 22222
Q ss_pred HHHHHhCCChhhHHHHHHHHHhcC
Q 042593 143 LPAIWKNGEVRNCQLIHGYGEKRG 166 (352)
Q Consensus 143 l~~~~~~~~~~~a~~~~~~~~~~~ 166 (352)
...|...|+.+.|..=|+..-+.|
T Consensus 122 g~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 122 GLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHhCchHHHHHhHHHHHHhC
Confidence 333445556666655555554444
No 279
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.76 E-value=4 Score=28.46 Aligned_cols=73 Identities=7% Similarity=-0.002 Sum_probs=40.5
Q ss_pred HHHHHHHHHhCCChh--hHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCC-HhhHHHHH
Q 042593 139 ILAVLPAIWKNGEVR--NCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN-LVSWTTII 212 (352)
Q Consensus 139 ~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li 212 (352)
|..--..+....+.+ +..+-++.+....+.| .+.+..+.+++|.+.+++..|.++|+.++.+..+ ...|..++
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP-~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVP-EPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCC-ChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 333334444433333 4556666666667777 7788888888888888888888888877544222 22555544
No 280
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.67 E-value=2.8 Score=35.44 Aligned_cols=61 Identities=11% Similarity=-0.008 Sum_probs=50.6
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhcc
Q 042593 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200 (352)
Q Consensus 138 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 200 (352)
++..++..+...|+.+.+...++++...... +...|..+|.+|.+.|+...|++.|+.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~--~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY--DEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 4456677777888899999999988887544 888999999999999999999999988754
No 281
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.45 E-value=10 Score=35.48 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=39.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
|..|-++..+.+++..|.+.|.+. +. |..|+-.+...|+-+....+-+..++.|.. |...-+|
T Consensus 669 w~~Lg~~al~~~~l~lA~EC~~~a-~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-------N~AF~~~ 731 (794)
T KOG0276|consen 669 WRQLGDAALSAGELPLASECFLRA-RD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-------NLAFLAY 731 (794)
T ss_pred HHHHHHHHhhcccchhHHHHHHhh-cc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-------chHHHHH
Confidence 555556666666666666655555 21 224444455555555444444444444432 1222344
Q ss_pred HhhCChHHHHHHHHHh
Q 042593 183 AKCGCIFSASKLFEDT 198 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~ 198 (352)
-..|+++++.+++.+-
T Consensus 732 ~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 732 FLSGDYEECLELLIST 747 (794)
T ss_pred HHcCCHHHHHHHHHhc
Confidence 4556666666655543
No 282
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.27 E-value=18 Score=33.34 Aligned_cols=178 Identities=11% Similarity=0.070 Sum_probs=107.9
Q ss_pred CCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC---CCchhHHHH
Q 042593 20 PLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE---RNLVTWNVI 96 (352)
Q Consensus 20 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~ 96 (352)
.++|-...-+++..++..-.+.-+..+-..|...| -+...|-.++.+|... .-++-..+++.+.+ .|++
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv----- 133 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVV----- 133 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHH-----
Confidence 34678888899999999989888888888898877 5677888889999887 45666666665443 2322
Q ss_pred HHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC--C---hhhHHHHHHHHHhCCChhhHHHHHHHHHhc-CCCCC
Q 042593 97 ITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP--S---EITILAVLPAIWKNGEVRNCQLIHGYGEKR-GFNAF 170 (352)
Q Consensus 97 i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p--~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 170 (352)
...-+..+...++..++...|.+. ...-++. + ...|..+...- ..+.+....+...+.+. |...
T Consensus 134 ------~~ReLa~~yEkik~sk~a~~f~Ka-~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~- 203 (711)
T COG1747 134 ------IGRELADKYEKIKKSKAAEFFGKA-LYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGR- 203 (711)
T ss_pred ------HHHHHHHHHHHhchhhHHHHHHHH-HHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccch-
Confidence 222222233336666777777666 2221110 0 11233332211 24555566666665543 2222
Q ss_pred chhhHHHHHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHH
Q 042593 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGF 215 (352)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~ 215 (352)
....+.-+-.-|....++.+|++++..+.+. ..|+..-..++.-+
T Consensus 204 ~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l 249 (711)
T COG1747 204 GSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENL 249 (711)
T ss_pred HHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence 4455555667778888899999988876554 45555554554443
No 283
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.16 E-value=13 Score=36.16 Aligned_cols=150 Identities=9% Similarity=-0.008 Sum_probs=75.1
Q ss_pred cHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHH----HHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHH
Q 042593 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALG----DMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV 101 (352)
Q Consensus 26 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~ 101 (352)
....-|..+.+...++.|..+ ++..+ .+..+...+. +.+-+.|++++|...|-+-..--.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~L---Ak~~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le----------- 399 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINL---AKSQH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE----------- 399 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHH---HHhcC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC-----------
Confidence 344455555555555555443 22333 3333333344 444478999999877766543111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 042593 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181 (352)
Q Consensus 102 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 181 (352)
-..+|.-|..+.........++.+ .+.|+ .+...-+.|+++|.+.++.++...+.+... .|.. ..-....+..
T Consensus 400 -~s~Vi~kfLdaq~IknLt~YLe~L-~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~---~fd~e~al~I 472 (933)
T KOG2114|consen 400 -PSEVIKKFLDAQRIKNLTSYLEAL-HKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW---FFDVETALEI 472 (933)
T ss_pred -hHHHHHHhcCHHHHHHHHHHHHHH-HHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce---eeeHHHHHHH
Confidence 112334444455555555555666 44443 344455566777777777666655555433 2211 1112344455
Q ss_pred HHhhCChHHHHHHHHHh
Q 042593 182 YAKCGCIFSASKLFEDT 198 (352)
Q Consensus 182 ~~~~g~~~~a~~~~~~~ 198 (352)
+.+.+-+++|..+-...
T Consensus 473 lr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 473 LRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHhChHHHHHHHHHHh
Confidence 55555555555544443
No 284
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=89.13 E-value=0.63 Score=25.10 Aligned_cols=22 Identities=23% Similarity=0.164 Sum_probs=12.7
Q ss_pred chhhHHHHHHHHHhhCChHHHH
Q 042593 171 DIHVSNCLIDTYAKCGCIFSAS 192 (352)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~a~ 192 (352)
+...|+.+..+|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 5555556656666666555553
No 285
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.13 E-value=5.8 Score=33.13 Aligned_cols=200 Identities=10% Similarity=0.004 Sum_probs=125.3
Q ss_pred hcCCHHHHHHHHHHhHhccCCCCC--hhhHHHHHHHHHhCCChhhHHHHHHHHHhc---CC--CCCchhhHHHHHHHHHh
Q 042593 112 RMNRSNEALALFRRMAACEYTEPS--EITILAVLPAIWKNGEVRNCQLIHGYGEKR---GF--NAFDIHVSNCLIDTYAK 184 (352)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~~li~~~~~ 184 (352)
+..++++|+.-|.+.....|-+-+ -...-.++....+.+++++....+.++... .+ .. +....|++++.-+.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNy-SEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNY-SEKSINSILDYIST 117 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHhh
Confidence 345889999999988665553333 346778899999999999999888888542 11 12 45677888888777
Q ss_pred hCChHHHHHHHHHhccC-------CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHH
Q 042593 185 CGCIFSASKLFEDTSVD-------RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVE 257 (352)
Q Consensus 185 ~g~~~~a~~~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~ 257 (352)
+.+.+--.++++.-.+. ..-..|-+.|-..|...+.+.+...+++++..+--+.+ ..-. . +
T Consensus 118 S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed-GedD----------~-k 185 (440)
T KOG1464|consen 118 SKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED-GEDD----------Q-K 185 (440)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc-Cchh----------h-h
Confidence 77776666665542211 22224445677778888888888888888766421111 0000 0 0
Q ss_pred hcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC---CCCchhhHHH----HHHHHhcccccCcccccccchh
Q 042593 258 ECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ---ITNVVVWRTG----FLRLLINSYFFSPITLNSQRLF 326 (352)
Q Consensus 258 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~l----i~~~~~~g~~~~a~~~~~~~~~ 326 (352)
. |. --...|..=|..|..+.+-.....+++..... .|.+.....+ ...+++.|++++|..-|.++++
T Consensus 186 K-Gt-QLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 186 K-GT-QLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred c-cc-hhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 0 11 12346667788888888877777777654332 4444333322 2335678888888887777754
No 286
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.90 E-value=2.5 Score=29.05 Aligned_cols=45 Identities=7% Similarity=-0.049 Sum_probs=27.3
Q ss_pred hHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhc
Q 042593 154 NCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199 (352)
Q Consensus 154 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 199 (352)
++.+-++.+....+.| ++.+..+.+++|.+.+|+.-|.++|+.++
T Consensus 25 e~rr~mN~l~~~DlVP-~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVP-EPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4445555555555556 66666666666666666666666666554
No 287
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=88.75 E-value=8.3 Score=28.88 Aligned_cols=77 Identities=12% Similarity=0.018 Sum_probs=54.3
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhcCCC-CCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCH--hhHHHHHHHHHc
Q 042593 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFN-AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL--VSWTTIISGFAM 217 (352)
Q Consensus 141 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~li~~~~~ 217 (352)
.-.....+.|++++|.+.|+.+..+=.. +....+--.++.+|-+.|++++|...+++..+..|+- .-|--.+.+++.
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 3344455779999999999999876322 2245667789999999999999999999987664432 334444444443
No 288
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.66 E-value=12 Score=30.80 Aligned_cols=205 Identities=12% Similarity=0.065 Sum_probs=108.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
|..-..+|-...++++|...+.+..+. .+-+...|. ..+.++.|--+.+++.+.. . -...|+.....|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~--yEnnrslfh-------AAKayEqaamLake~~kls--E-vvdl~eKAs~lY 101 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG--YENNRSLFH-------AAKAYEQAAMLAKELSKLS--E-VVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH--HHhcccHHH-------HHHHHHHHHHHHHHHHHhH--H-HHHHHHHHHHHH
Confidence 666666777788888888877766211 111211111 1233455555555554432 1 345566667777
Q ss_pred HhhCChHHHHHHHHHhc---cC-CCCH--hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHH--
Q 042593 183 AKCGCIFSASKLFEDTS---VD-RKNL--VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDK-- 254 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~---~~-~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~-- 254 (352)
..+|..+.|-..+++.- +. .|+. ..|..-+...-..++...|.+++...-..-++... +.++-..+.+
T Consensus 102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k----f~Eaa~a~lKe~ 177 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK----FTEAATAFLKEG 177 (308)
T ss_pred HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH----hhHHHHHHHHhh
Confidence 77777666655555421 11 4432 34555555555555556666655554332111111 1111111111
Q ss_pred --HHHhcCCCCC-hhhHHHHHHHHHHcCChhHHHHHHhc---CCCC--CCCchhhHHHHHHHHhcccccCcccccccch
Q 042593 255 --MVEECEVLPD-IKHYGCLIDILERAGRLEQAEEVASG---IPSQ--ITNVVVWRTGFLRLLINSYFFSPITLNSQRL 325 (352)
Q Consensus 255 --m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~---m~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 325 (352)
..+- .--++ ...|-..|-.+....|+..|++.++. +... +.+..+...|+.+| ..|+.++.-.+..--.
T Consensus 178 ~~~~~~-~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~sp~ 254 (308)
T KOG1585|consen 178 VAADKC-DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLSSPT 254 (308)
T ss_pred hHHHHH-hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHcChH
Confidence 1111 11122 24466667777778899999999988 4443 56778888888886 4566666555544443
No 289
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.36 E-value=26 Score=34.02 Aligned_cols=149 Identities=9% Similarity=0.042 Sum_probs=91.8
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhCCCC---chhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHH
Q 042593 31 IRTCVTLSYPNLGTQLHAVFSKVGFQS---HVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGII 107 (352)
Q Consensus 31 l~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li 107 (352)
++.+.+.+.+++|+++.+... |..| -.......|+.+.-.|++++|-...-.|...+..- |..-+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~e----------We~~V 430 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAE----------WELWV 430 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHH----------HHHHH
Confidence 566777788888887655443 3344 34567788999999999999999988888777766 66666
Q ss_pred HHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHH------------------HHhcCCCC
Q 042593 108 DGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGY------------------GEKRGFNA 169 (352)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~------------------~~~~~~~~ 169 (352)
..+...++... ++.-+ -......+...|..++..+.. .+..+-.++.++ ..+. ..
T Consensus 431 ~~f~e~~~l~~---Ia~~l-Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se 503 (846)
T KOG2066|consen 431 FKFAELDQLTD---IAPYL-PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQN--SE 503 (846)
T ss_pred HHhccccccch---hhccC-CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhh--cc
Confidence 66666655543 22333 222223344566666666655 222111111111 1111 11
Q ss_pred CchhhHHHHHHHHHhhCChHHHHHHHHHhc
Q 042593 170 FDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199 (352)
Q Consensus 170 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 199 (352)
+...-..|...|...+++++|.+.+-...
T Consensus 504 -~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 504 -STALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred -chhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 23344568999999999999999998774
No 290
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=88.08 E-value=8.1 Score=39.05 Aligned_cols=20 Identities=20% Similarity=0.111 Sum_probs=9.0
Q ss_pred HHHHHhCCChhhHHHHHHHH
Q 042593 143 LPAIWKNGEVRNCQLIHGYG 162 (352)
Q Consensus 143 l~~~~~~~~~~~a~~~~~~~ 162 (352)
+.+|...|+|++|..+..++
T Consensus 972 l~a~~~~~dWr~~l~~a~ql 991 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQL 991 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhh
Confidence 33444444444444444433
No 291
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.02 E-value=1.4 Score=24.50 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=22.0
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 205 LVSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 205 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
..+++.|...|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35677888888888888888888888665
No 292
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=87.82 E-value=6.3 Score=34.42 Aligned_cols=229 Identities=13% Similarity=0.062 Sum_probs=132.2
Q ss_pred HHhcCCcchHHHHHHHHHHhC--CCCchhhHHHHHHHHHhcCChhHHHHHhcc-C---CC--CCchhHHHHHHHHHhHHH
Q 042593 34 CVTLSYPNLGTQLHAVFSKVG--FQSHVYVNTALGDMYVSLGFLKDSSKLFDE-L---PE--RNLVTWNVIITGLVKWTG 105 (352)
Q Consensus 34 ~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-m---~~--~~~~~~~~~i~~~~~~~~ 105 (352)
+....+.+.++..+..-..+- ..-.-.++..+..+.++.|.+++++..--. | .+ .....+.+ |-.
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea-------~ln 88 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEA-------YLN 88 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH
Confidence 335566677776666544321 111235677778888888888776543211 1 11 11111111 556
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhccCCCCCh---hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCC----CCchhhHHHH
Q 042593 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSE---ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN----AFDIHVSNCL 178 (352)
Q Consensus 106 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~l 178 (352)
+.+++-+.-++.+++.+-+.-....|..|.. ....++-+++.-.+.++++.+.|+...+.... .....++-.|
T Consensus 89 lar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~L 168 (518)
T KOG1941|consen 89 LARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSL 168 (518)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhH
Confidence 6666666666666666654433444444421 23445677777778888888888876543221 1145688899
Q ss_pred HHHHHhhCChHHHHHHHHHhccC----C-CCH------hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHh
Q 042593 179 IDTYAKCGCIFSASKLFEDTSVD----R-KNL------VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEE 247 (352)
Q Consensus 179 i~~~~~~g~~~~a~~~~~~~~~~----~-~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~ 247 (352)
-..|.+..|+++|.-+....... . .|. ...-.|..++-..|....|.+.-++..+..+.
T Consensus 169 gslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~---------- 238 (518)
T KOG1941|consen 169 GSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ---------- 238 (518)
T ss_pred HHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH----------
Confidence 99999999999987666543221 1 222 12223455677788888888877775543111
Q ss_pred HHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCChhHHHHHHhc
Q 042593 248 GLKFFDKMVEECEVLP-DIKHYGCLIDILERAGRLEQAEEVASG 290 (352)
Q Consensus 248 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 290 (352)
. |-.| .......+.+.|...|+.+.|+.=++.
T Consensus 239 ----------~-Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 239 ----------H-GDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred ----------h-CChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 1 3222 233445667777888887777655543
No 293
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=87.59 E-value=16 Score=30.92 Aligned_cols=115 Identities=10% Similarity=0.030 Sum_probs=83.4
Q ss_pred cCChhHHHHHhccCCC-----CCchhHHHHHHHHHhHHHHHHHHHhc--CCHHHHHHHHHHhHhccCCCCChhhHHHHHH
Q 042593 72 LGFLKDSSKLFDELPE-----RNLVTWNVIITGLVKWTGIIDGYSRM--NRSNEALALFRRMAACEYTEPSEITILAVLP 144 (352)
Q Consensus 72 ~g~~~~a~~~~~~m~~-----~~~~~~~~~i~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~ 144 (352)
...+.+|+++|+...- .|... -..+++..... .....-.++.+-+....+..++..+...+++
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~ev----------islLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEV----------ISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHH----------HHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 3456778888884321 23333 44455554441 1344445555555445556788899999999
Q ss_pred HHHhCCChhhHHHHHHHHHhc-CCCCCchhhHHHHHHHHHhhCChHHHHHHHHH
Q 042593 145 AIWKNGEVRNCQLIHGYGEKR-GFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197 (352)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 197 (352)
.+++.+++....++++..... +... |...|..+|+.-...|+..-..++.++
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~-D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGN-DPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCC-CCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 999999999999999988766 4555 889999999999999999888888775
No 294
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=87.55 E-value=7.6 Score=32.75 Aligned_cols=127 Identities=11% Similarity=0.074 Sum_probs=78.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhccCCCCChh-------hHHHHHHHHHhCCChhhHHHHHHHHHhcC---CCCCchhhH
Q 042593 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEI-------TILAVLPAIWKNGEVRNCQLIHGYGEKRG---FNAFDIHVS 175 (352)
Q Consensus 106 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~ 175 (352)
+.+...+.+++++|...+.++ -..|+..|.. |...+...|.+.|+....-+......+.- -.|....+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~i-L~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRI-LGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHH-hcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 345567789999999999999 6667766654 45577778888888766555544333211 112134455
Q ss_pred HHHHHHHHhh-CChHHHHHHHHHhccC-CC------CHhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 176 NCLIDTYAKC-GCIFSASKLFEDTSVD-RK------NLVSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 176 ~~li~~~~~~-g~~~~a~~~~~~~~~~-~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
..|+.-+... ..++....+.....+. .. -...=..++..+.+.|.+.+|..+.+.+..
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ 153 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLH 153 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 5555555433 3466666666554322 11 112234578889999999999887765543
No 295
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=87.10 E-value=13 Score=29.36 Aligned_cols=221 Identities=14% Similarity=0.043 Sum_probs=144.8
Q ss_pred CCcchHHHHHHHHHHhCCC-CchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHHHHhHHHHHHHHHhcC
Q 042593 38 SYPNLGTQLHAVFSKVGFQ-SHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGLVKWTGIIDGYSRMN 114 (352)
Q Consensus 38 g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~~~~~~~li~~~~~~~ 114 (352)
+....+...+......... .....+......+...+++..+...+..... ........ +......+...+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 109 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEA-------LLNLGLLLEALG 109 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHH-------HHHHHHHHHHHh
Confidence 4555555555555544322 1357777888888899999988888877643 11111111 666667777788
Q ss_pred CHHHHHHHHHHhHhccCCCCChhhHHHHHH-HHHhCCChhhHHHHHHHHHhcCC--CCCchhhHHHHHHHHHhhCChHHH
Q 042593 115 RSNEALALFRRMAACEYTEPSEITILAVLP-AIWKNGEVRNCQLIHGYGEKRGF--NAFDIHVSNCLIDTYAKCGCIFSA 191 (352)
Q Consensus 115 ~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a 191 (352)
+...+...+... ......+ ......... ++...|+.+.+...++....... .. ....+......+...++.+.+
T Consensus 110 ~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a 186 (291)
T COG0457 110 KYEEALELLEKA-LALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNE-LAEALLALGALLEALGRYEEA 186 (291)
T ss_pred hHHHHHHHHHHH-HcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc-hHHHHHHhhhHHHHhcCHHHH
Confidence 889999999888 4332222 122223333 78899999999999998865332 12 344455555557788899999
Q ss_pred HHHHHHhccCCCC--HhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHH
Q 042593 192 SKLFEDTSVDRKN--LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYG 269 (352)
Q Consensus 192 ~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~ 269 (352)
...+.......++ ...+..+-..+...++++.|...+........ .....+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--------------------------~~~~~~~ 240 (291)
T COG0457 187 LELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP--------------------------DNAEALY 240 (291)
T ss_pred HHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCc--------------------------ccHHHHh
Confidence 9999988766444 67788888888888888999888888776311 1233344
Q ss_pred HHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 270 CLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
.+...+...|..+.+...+......
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 241 NLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4444444666788888777766555
No 296
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.97 E-value=1 Score=23.88 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=11.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 208 WTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 208 ~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
|..+..+|...|++++|...|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44444444444555555554444443
No 297
>PRK11906 transcriptional regulator; Provisional
Probab=86.70 E-value=25 Score=32.05 Aligned_cols=164 Identities=9% Similarity=-0.011 Sum_probs=99.5
Q ss_pred hhH--HHHHHHHHhcC-----ChhHHHHHhccCC---C--CCc-hhHHHHHHHHHhHHHHHHHHHh-cCCHHHHHHHHHH
Q 042593 60 YVN--TALGDMYVSLG-----FLKDSSKLFDELP---E--RNL-VTWNVIITGLVKWTGIIDGYSR-MNRSNEALALFRR 125 (352)
Q Consensus 60 ~~~--~~li~~~~~~g-----~~~~a~~~~~~m~---~--~~~-~~~~~~i~~~~~~~~li~~~~~-~~~~~~a~~~~~~ 125 (352)
..| ...+.+..... ..+.|..+|.+.. + |+- ..|..+- ++++.....++.. ..+..+|.++-++
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA--~~h~~~~~~g~~~~~~~~~~a~~~A~r 329 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLA--ECHMSLALHGKSELELAAQKALELLDY 329 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHH--HHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 455 55565555422 3567888899877 4 332 2322221 1112222222222 3456677777776
Q ss_pred hHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCH
Q 042593 126 MAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205 (352)
Q Consensus 126 m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 205 (352)
..... .-|......+..+....++.+.+...|++....+.. ...+|....-...-+|+.++|.+.+++..+-.|.-
T Consensus 330 Aveld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn--~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 330 VSDIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD--IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HHhcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 63322 245566667777777888899999999999887655 56666666666777899999999999965555533
Q ss_pred ---hhHHHHHHHHHcCCCHHHHHHHHHH
Q 042593 206 ---VSWTTIISGFAMHGMGKEAVENFER 230 (352)
Q Consensus 206 ---~~~~~li~~~~~~~~~~~a~~~~~~ 230 (352)
......+..|+.++ .++|..++-+
T Consensus 406 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 406 RKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred hHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 22333344666664 5666666544
No 298
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.56 E-value=8.5 Score=31.73 Aligned_cols=175 Identities=11% Similarity=0.038 Sum_probs=99.3
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHc
Q 042593 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAM 217 (352)
Q Consensus 138 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~ 217 (352)
.|..-..+|...+++++|...+.+..+.--. +...|.+ ..-++.|.-+.+++....--+..|+.....|..
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEn--nrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYEN--NRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHh--cccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4556667788888999988877666532111 2222211 112333444444443222334455666778888
Q ss_pred CCCHHHHHHHHHHHHh--cCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-
Q 042593 218 HGMGKEAVENFERMQK--VGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ- 294 (352)
Q Consensus 218 ~~~~~~a~~~~~~m~~--~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 294 (352)
+|..+.|-..+++.-+ .++.|+...-.+.++..+++.-- ..+.-...+..+-..+.+..++++|-..+.+-...
T Consensus 104 ~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~d---r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~ 180 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDD---RDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAA 180 (308)
T ss_pred hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc---hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHH
Confidence 8888888777776544 24566433322333333332211 11223456777788888999998887766544332
Q ss_pred -----CCCc-hhhHHHHHHHHhcccccCcccccccc
Q 042593 295 -----ITNV-VVWRTGFLRLLINSYFFSPITLNSQR 324 (352)
Q Consensus 295 -----~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~ 324 (352)
.++. ..|-..|..|+...++..|...++..
T Consensus 181 ~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 181 DKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred HHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 1222 34666677777778888887777663
No 299
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.36 E-value=12 Score=28.21 Aligned_cols=54 Identities=9% Similarity=0.140 Sum_probs=39.9
Q ss_pred HHhcCCcchHHHHHHHHHHhCC-CCchhhHHHHHHHHHhcCChhHHHHHhccCCCCC
Q 042593 34 CVTLSYPNLGTQLHAVFSKVGF-QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERN 89 (352)
Q Consensus 34 ~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 89 (352)
-...++++++..+++.|.-..- .+...++. ...+...|++++|.++|+++.+..
T Consensus 20 aL~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccC
Confidence 3458899999999999986541 12334453 445678999999999999998744
No 300
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.47 E-value=2.2 Score=29.36 Aligned_cols=47 Identities=11% Similarity=0.157 Sum_probs=38.7
Q ss_pred CCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHH
Q 042593 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFL 306 (352)
Q Consensus 260 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~ 306 (352)
.+.|++....+-+++|.+..|+..|.++|+-++.+ ..+...|..++.
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 78899999999999999999999999999988766 334456666554
No 301
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=85.44 E-value=1.4 Score=23.24 Aligned_cols=23 Identities=26% Similarity=0.306 Sum_probs=9.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHH
Q 042593 210 TIISGFAMHGMGKEAVENFERMQ 232 (352)
Q Consensus 210 ~li~~~~~~~~~~~a~~~~~~m~ 232 (352)
.+-..+...|++++|.+.|++..
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al 28 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKAL 28 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 33444444444444444444443
No 302
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=85.20 E-value=8.9 Score=32.23 Aligned_cols=25 Identities=12% Similarity=-0.048 Sum_probs=11.7
Q ss_pred hHHHHHHHHHhhCChHHHHHHHHHh
Q 042593 174 VSNCLIDTYAKCGCIFSASKLFEDT 198 (352)
Q Consensus 174 ~~~~li~~~~~~g~~~~a~~~~~~~ 198 (352)
+...-|-.|.|.++...+.++-...
T Consensus 120 IleLCILLysKv~Ep~amlev~~~W 144 (309)
T PF07163_consen 120 ILELCILLYSKVQEPAAMLEVASAW 144 (309)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3334444455555555554444443
No 303
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.71 E-value=13 Score=32.55 Aligned_cols=64 Identities=11% Similarity=-0.078 Sum_probs=47.8
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-----CCCchhhHHHHHHHHhcccccCcccccccchh
Q 042593 263 PDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-----ITNVVVWRTGFLRLLINSYFFSPITLNSQRLF 326 (352)
Q Consensus 263 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 326 (352)
....+|..+.+.+.+.|.++.|...+..+... ...+.+.-.-..-+...|+..+|+....+.+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678899999999999999999999888764 11334444456667788888888887766554
No 304
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=84.45 E-value=7 Score=31.60 Aligned_cols=76 Identities=11% Similarity=0.034 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCC--CCchhhHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN--AFDIHVSNCLID 180 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~ 180 (352)
.+..++.+.+.+.+++++....+-.+.+ +-|..+-..++.-+|-.|++++|..-++..-+.... + ...+|..+|+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~-~a~lyr~lir 80 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV-GASLYRHLIR 80 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch-HHHHHHHHHH
Confidence 3455677778888888888777663422 234456677788888888888887766655443322 2 3456666665
Q ss_pred H
Q 042593 181 T 181 (352)
Q Consensus 181 ~ 181 (352)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
No 305
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.28 E-value=7.5 Score=31.00 Aligned_cols=75 Identities=11% Similarity=-0.106 Sum_probs=55.9
Q ss_pred hCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC-----CCCHhhHHHHHHHHHcCCCHH
Q 042593 148 KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-----RKNLVSWTTIISGFAMHGMGK 222 (352)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~ 222 (352)
+.|+ +.|.+.|-.+...+.-. ++.....|...|. ..+.+++..++...... .+|+..+.+|.+.+.+.|+.+
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~-t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELE-TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCC-CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 4444 66777777777777655 7777777776666 56788888888765432 578899999999999999998
Q ss_pred HHH
Q 042593 223 EAV 225 (352)
Q Consensus 223 ~a~ 225 (352)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
No 306
>PHA02875 ankyrin repeat protein; Provisional
Probab=84.20 E-value=32 Score=31.12 Aligned_cols=206 Identities=12% Similarity=-0.047 Sum_probs=98.5
Q ss_pred hhHHHHHHhhccCCCCCCCCCccc--HHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchh--hHHHHHHHHHhcCChhHH
Q 042593 3 VYKQLQQIYIHSHSPLPPLFDSFT--YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY--VNTALGDMYVSLGFLKDS 78 (352)
Q Consensus 3 ~~~~M~~~~~~~~g~~P~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~a 78 (352)
+.+.+.+ .|..| +... ..+.+..++..|+.+ +.+.+.+.|..|+.. .....+...+..|+.+.+
T Consensus 17 iv~~Ll~-----~g~~~---n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v 84 (413)
T PHA02875 17 IARRLLD-----IGINP---NFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAV 84 (413)
T ss_pred HHHHHHH-----CCCCC---CccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHH
Confidence 4455555 66666 4322 344556666777764 555566667655432 123346666788998888
Q ss_pred HHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhh--HHHHHHHHHhCCChhhHH
Q 042593 79 SKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT--ILAVLPAIWKNGEVRNCQ 156 (352)
Q Consensus 79 ~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~ 156 (352)
..+++.-...+...... -...+...+..|+.+-+..++ +.|..|+... -.+.+...+..|+.+.+.
T Consensus 85 ~~Ll~~~~~~~~~~~~~-------g~tpL~~A~~~~~~~iv~~Ll-----~~gad~~~~~~~g~tpLh~A~~~~~~~~v~ 152 (413)
T PHA02875 85 EELLDLGKFADDVFYKD-------GMTPLHLATILKKLDIMKLLI-----ARGADPDIPNTDKFSPLHLAVMMGDIKGIE 152 (413)
T ss_pred HHHHHcCCcccccccCC-------CCCHHHHHHHhCCHHHHHHHH-----hCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 88887543211100000 011223344556664333333 3344443321 123445555677766555
Q ss_pred HHHHHHHhcCCCCC--chhhHHHHHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 157 LIHGYGEKRGFNAF--DIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 157 ~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
.+++ .|..+. +..-. ..+...+..|+.+-+.-+++.-... ..+.....+++...+..|+.+ +.+-+.+
T Consensus 153 ~Ll~----~g~~~~~~d~~g~-TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~ 223 (413)
T PHA02875 153 LLID----HKACLDIEDCCGC-TPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIK 223 (413)
T ss_pred HHHh----cCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHH
Confidence 4443 443320 12222 2334455667776665555532111 111111224444445556654 4455556
Q ss_pred cCCCCCcc
Q 042593 234 VGLKPNRS 241 (352)
Q Consensus 234 ~~~~p~~~ 241 (352)
.|..++..
T Consensus 224 ~gad~n~~ 231 (413)
T PHA02875 224 RGADCNIM 231 (413)
T ss_pred CCcCcchH
Confidence 67666543
No 307
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.14 E-value=1.2 Score=23.29 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=11.7
Q ss_pred HHHHHhhCChHHHHHHHHHhccCCC
Q 042593 179 IDTYAKCGCIFSASKLFEDTSVDRK 203 (352)
Q Consensus 179 i~~~~~~g~~~~a~~~~~~~~~~~~ 203 (352)
..++.+.|+.++|.+.|+++....|
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3444445555555555555443333
No 308
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.06 E-value=3.4 Score=21.79 Aligned_cols=26 Identities=15% Similarity=0.140 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHhhCChHHHHHHHHHh
Q 042593 173 HVSNCLIDTYAKCGCIFSASKLFEDT 198 (352)
Q Consensus 173 ~~~~~li~~~~~~g~~~~a~~~~~~~ 198 (352)
.+|..+..+|...|++++|+..|++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 46888999999999999999999875
No 309
>PRK11906 transcriptional regulator; Provisional
Probab=84.05 E-value=33 Score=31.25 Aligned_cols=118 Identities=9% Similarity=0.004 Sum_probs=81.9
Q ss_pred CHHHHHHHHHHhHhccCCCCChh-hHHHHHHHHHh---------CCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHh
Q 042593 115 RSNEALALFRRMAACEYTEPSEI-TILAVLPAIWK---------NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK 184 (352)
Q Consensus 115 ~~~~a~~~~~~m~~~~~~~p~~~-t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 184 (352)
..+.|+.+|.+......+.|+-. .|..+..++.. ..+..+|.+.-+...+.+.. |+.....+..++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~--Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV--DGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHh
Confidence 45688889999854445666643 34433333321 22345566666666666544 78888888888888
Q ss_pred hCChHHHHHHHHHhccCCCCH-hhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 185 CGCIFSASKLFEDTSVDRKNL-VSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 185 ~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
.|+++.|...|++...-.||. .+|...-..+.-.|+.++|.+.+++..+.
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 999999999999987667753 44555555567789999999999996653
No 310
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.99 E-value=1.5 Score=24.41 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHhccCC
Q 042593 59 VYVNTALGDMYVSLGFLKDSSKLFDELP 86 (352)
Q Consensus 59 ~~~~~~li~~~~~~g~~~~a~~~~~~m~ 86 (352)
..+++.|...|...|++++|+.++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 4578889999999999999999888753
No 311
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.71 E-value=11 Score=34.18 Aligned_cols=127 Identities=10% Similarity=0.008 Sum_probs=83.8
Q ss_pred hcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHH
Q 042593 112 RMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191 (352)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 191 (352)
..||+..|-+-+...++...-.|+....-+.| +...|+++++...+....+. +.. ...+-.++++..-+.|+++.|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s-~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGT-TDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcC-CchHHHHHHHhhhchhhHHHH
Confidence 45666655544443335555556665544443 56789999998888766543 223 667788899999999999999
Q ss_pred HHHHHHhccCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcch
Q 042593 192 SKLFEDTSVDR-KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW 242 (352)
Q Consensus 192 ~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 242 (352)
..+-..|.... .+..........--..|-++++...|+++...+.+.+...
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccc
Confidence 99998887662 3344333333344556778999999999877654444433
No 312
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.70 E-value=2.2 Score=21.18 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=15.0
Q ss_pred HHHHHHHHHhcCChhHHHHHhc
Q 042593 62 NTALGDMYVSLGFLKDSSKLFD 83 (352)
Q Consensus 62 ~~~li~~~~~~g~~~~a~~~~~ 83 (352)
...+..++...|++++|+.+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4456667777777777777665
No 313
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=83.06 E-value=14 Score=26.23 Aligned_cols=24 Identities=21% Similarity=0.490 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHh
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRM 126 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m 126 (352)
|..|+.-|...|..++|++++.+.
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l 65 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKL 65 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHH
Confidence 888889999999999999999988
No 314
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.67 E-value=1.9 Score=29.94 Aligned_cols=48 Identities=13% Similarity=0.194 Sum_probs=35.2
Q ss_pred CCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHH
Q 042593 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLR 307 (352)
Q Consensus 260 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~ 307 (352)
.+.|++....+-+++|.+..++..|.++|+-++.+ .+....|..++.-
T Consensus 40 DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 40 DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQE 88 (108)
T ss_dssp SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHH
T ss_pred ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 78899999999999999999999999999988776 3333367666543
No 315
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.41 E-value=40 Score=31.82 Aligned_cols=99 Identities=17% Similarity=0.096 Sum_probs=57.7
Q ss_pred HhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHH
Q 042593 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190 (352)
Q Consensus 111 ~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 190 (352)
.+.|+++.|.++..+. -+..-|..|.++....+++..|.+.+.... -|..|+-++...|+.+.
T Consensus 648 l~lgrl~iA~~la~e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~----------d~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA-------NSEVKWRQLGDAALSAGELPLASECFLRAR----------DLGSLLLLYTSSGNAEG 710 (794)
T ss_pred hhcCcHHHHHHHHHhh-------cchHHHHHHHHHHhhcccchhHHHHHHhhc----------chhhhhhhhhhcCChhH
Confidence 4556666666665555 244456677777777777777766665332 23455556666666555
Q ss_pred HHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 042593 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230 (352)
Q Consensus 191 a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 230 (352)
...+-....+...+ |...-+|...|+++++.+++.+
T Consensus 711 l~~la~~~~~~g~~----N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 711 LAVLASLAKKQGKN----NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHHhhccc----chHHHHHHHcCCHHHHHHHHHh
Confidence 44444444333322 3334456677888888777755
No 316
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=81.92 E-value=15 Score=25.64 Aligned_cols=85 Identities=14% Similarity=0.126 Sum_probs=53.5
Q ss_pred cchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHH
Q 042593 40 PNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEA 119 (352)
Q Consensus 40 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a 119 (352)
-++|..+-+.+...+-. ....--+-+..+.+.|++++|..+.+.+.-||... |-+|-. -+.|..+++
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlep----------w~ALce--~rlGl~s~l 87 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEP----------WLALCE--WRLGLGSAL 87 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHH----------HHHHHH--HhhccHHHH
Confidence 45666666666655421 22222233445668899999999999888888888 444333 366777777
Q ss_pred HHHHHHhHhccCCCCChhhH
Q 042593 120 LALFRRMAACEYTEPSEITI 139 (352)
Q Consensus 120 ~~~~~~m~~~~~~~p~~~t~ 139 (352)
..-+.+| ...| .|...+|
T Consensus 88 ~~rl~rl-a~sg-~p~lq~F 105 (115)
T TIGR02508 88 ESRLNRL-AASG-DPRLQTF 105 (115)
T ss_pred HHHHHHH-HhCC-CHHHHHH
Confidence 7777777 5554 3444444
No 317
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.66 E-value=6.4 Score=31.81 Aligned_cols=60 Identities=10% Similarity=-0.107 Sum_probs=49.6
Q ss_pred cHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCC
Q 042593 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP 86 (352)
Q Consensus 26 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 86 (352)
|.+..+..+.+.+.+.+++...++=++.. +.|...-..|+..+|-.|++++|..-++-.-
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 56677888999999999999888777765 5677788889999999999999987766544
No 318
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=79.23 E-value=6.4 Score=20.51 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHhhCChHHHHHHHHHh
Q 042593 173 HVSNCLIDTYAKCGCIFSASKLFEDT 198 (352)
Q Consensus 173 ~~~~~li~~~~~~g~~~~a~~~~~~~ 198 (352)
..+..+..++.+.|++++|.+.|++.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45677889999999999999999875
No 319
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=78.18 E-value=27 Score=26.34 Aligned_cols=96 Identities=9% Similarity=0.025 Sum_probs=65.9
Q ss_pred HHHHhCCCCch--hhHHHHHHHHHhcCChhHHHHHhccCCC---------CCchhHHHHHHHHHhHHHHHHHHHhcCC-H
Q 042593 49 VFSKVGFQSHV--YVNTALGDMYVSLGFLKDSSKLFDELPE---------RNLVTWNVIITGLVKWTGIIDGYSRMNR-S 116 (352)
Q Consensus 49 ~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~---------~~~~~~~~~i~~~~~~~~li~~~~~~~~-~ 116 (352)
.|.+.+..++. ...|.++.-....+++.....+++.+.. .+-.. |++++++.++..- -
T Consensus 27 y~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ss----------f~~if~SlsnSsSaK 96 (145)
T PF13762_consen 27 YMQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSS----------FHIIFKSLSNSSSAK 96 (145)
T ss_pred HhhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccch----------HHHHHHHHccChHHH
Confidence 34444555554 3467888888888888888888888742 12222 8888888866655 3
Q ss_pred HHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhH
Q 042593 117 NEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNC 155 (352)
Q Consensus 117 ~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a 155 (352)
-.+..+|+-| ++.+.+++..-|..++.++.+....+..
T Consensus 97 ~~~~~Lf~~L-k~~~~~~t~~dy~~li~~~l~g~~~~~~ 134 (145)
T PF13762_consen 97 LTSLTLFNFL-KKNDIEFTPSDYSCLIKAALRGYFHDSL 134 (145)
T ss_pred HHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHcCCCCcch
Confidence 4567788888 6677788888899999888776444443
No 320
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.51 E-value=45 Score=32.17 Aligned_cols=96 Identities=17% Similarity=0.116 Sum_probs=48.4
Q ss_pred HHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcc-----hhh---hHhHHH
Q 042593 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS-----WRI---GEEGLK 250 (352)
Q Consensus 179 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~~~---~~~a~~ 250 (352)
..-+...|++++|..+|+-. |+++.+.+++.+....-+..... +.. ...|..
T Consensus 421 A~~~e~~g~~~dAi~Ly~La--------------------~~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~ 480 (613)
T PF04097_consen 421 AREAEERGRFEDAILLYHLA--------------------EEYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKE 480 (613)
T ss_dssp HHHHHHCT-HHHHHHHHHHT--------------------T-HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH--------------------hhHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHH
Confidence 33455667777777777755 45666666665554421111111 111 444444
Q ss_pred HHHHHHHhcC----CCC-ChhhHHHHHH-----HHHHcCChhHHHHHHhcCCCC
Q 042593 251 FFDKMVEECE----VLP-DIKHYGCLID-----ILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 251 ~~~~m~~~~~----~~p-~~~~~~~li~-----~~~~~g~~~~A~~~~~~m~~~ 294 (352)
+.+....... +.+ +..|+..|++ -+...|++++|.+.++++.-.
T Consensus 481 i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~li 534 (613)
T PF04097_consen 481 ILERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLI 534 (613)
T ss_dssp HHHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S
T ss_pred HHHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Confidence 4444433201 111 2345554433 346799999999999988754
No 321
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=77.36 E-value=32 Score=30.97 Aligned_cols=66 Identities=11% Similarity=-0.000 Sum_probs=33.1
Q ss_pred HcCChhHHHHHHhcCCCC--CCC-chhhHHHHHHHHhcccccCcccccccchhhhhhHHHHhhhhhcccccccccCC
Q 042593 277 RAGRLEQAEEVASGIPSQ--ITN-VVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAALYALTQILGFKPLFRKESS 350 (352)
Q Consensus 277 ~~g~~~~A~~~~~~m~~~--~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (352)
..|+.+.-+++|.....+ .|. +..+......... +...+.+..|......-..+-+++.+..+|+.
T Consensus 253 q~gd~~~f~elF~~acPKFIsp~~pp~~~~~~~~~~~--------e~~~~Ql~~Fl~eV~~q~~l~~lRSyLKLYtt 321 (404)
T PF10255_consen 253 QRGDEEAFEELFSFACPKFISPVSPPDYDGPSQNKNK--------EPYRRQLKLFLDEVKQQQKLPTLRSYLKLYTT 321 (404)
T ss_pred HccCHHHHHHHHHhhCCCccCCCCCCCcccccchhhh--------hHHHHHHHHHHHHHHHhhhhhHHHHHHHhhcC
Confidence 467777788888888776 444 3322221111111 23333444444444444444455555666654
No 322
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.23 E-value=12 Score=32.02 Aligned_cols=96 Identities=13% Similarity=0.053 Sum_probs=69.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccC--CCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEY--TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 180 (352)
-..++..-.+..+++.+...+-++..... ..|+. +-.++++-+-+ -+.+++..++..-.+.|+-| |..+++.+|+
T Consensus 67 Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~-dqf~~c~l~D 143 (418)
T KOG4570|consen 67 VDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFP-DQFTFCLLMD 143 (418)
T ss_pred hhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhcccc-chhhHHHHHH
Confidence 44555555667888999888888833221 12222 23334444433 35678889998889999999 9999999999
Q ss_pred HHHhhCChHHHHHHHHHhccC
Q 042593 181 TYAKCGCIFSASKLFEDTSVD 201 (352)
Q Consensus 181 ~~~~~g~~~~a~~~~~~~~~~ 201 (352)
.+.+.+++.+|.++...|...
T Consensus 144 ~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 144 SFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHhcccHHHHHHHHHHHHHH
Confidence 999999999999988776543
No 323
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=77.20 E-value=50 Score=28.91 Aligned_cols=64 Identities=11% Similarity=-0.050 Sum_probs=49.4
Q ss_pred chhhHHHHHHHHHhhCChHHHHHHHHHhccCC-----CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR-----KNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
...+|..+.+.+.+.|.++.|...+..+.... .++...-.-...+-..|+..+|...+++..+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 56788899999999999999999999886532 13344444456677889999999999888773
No 324
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=77.03 E-value=23 Score=25.03 Aligned_cols=81 Identities=10% Similarity=0.026 Sum_probs=53.9
Q ss_pred cCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCH
Q 042593 37 LSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRS 116 (352)
Q Consensus 37 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~ 116 (352)
....++|..+.+++...+- .....--+-+..+.+.|++++|...=.....||... |-+|- -.+.|..
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p----------~~AL~--a~klGL~ 85 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEP----------WAALC--AWKLGLA 85 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHH----------HHHHH--HHHCT-H
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHH----------HHHHH--HHhhccH
Confidence 3456889999999998873 333334445556779999999966655666699988 44433 4578989
Q ss_pred HHHHHHHHHhHhccC
Q 042593 117 NEALALFRRMAACEY 131 (352)
Q Consensus 117 ~~a~~~~~~m~~~~~ 131 (352)
+++...+.++ ...|
T Consensus 86 ~~~e~~l~rl-a~~g 99 (116)
T PF09477_consen 86 SALESRLTRL-ASSG 99 (116)
T ss_dssp HHHHHHHHHH-CT-S
T ss_pred HHHHHHHHHH-HhCC
Confidence 9999999888 5444
No 325
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=76.70 E-value=5.7 Score=26.21 Aligned_cols=45 Identities=16% Similarity=0.169 Sum_probs=20.9
Q ss_pred hcCCHHHHHHHHHHhHhccCCCCChh-hHHHHHHHHHhCCChhhHH
Q 042593 112 RMNRSNEALALFRRMAACEYTEPSEI-TILAVLPAIWKNGEVRNCQ 156 (352)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~ 156 (352)
..++.++|+..|...++...-.|+.. ++..++.+++..|+++++.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L 63 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREML 63 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555533322222222 4555555555555554443
No 326
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.13 E-value=33 Score=26.34 Aligned_cols=59 Identities=15% Similarity=0.084 Sum_probs=41.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcC
Q 042593 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRG 166 (352)
Q Consensus 106 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 166 (352)
++..-.+.++.+.+..++.-+.....-.|...++..++ +.+.|++.+|.++++++....
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC
Confidence 34455677899999999999944332223333444444 678899999999999987765
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.59 E-value=9.1 Score=19.97 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=17.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 207 SWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 207 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
+|..+-..|...|++++|...|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666777777777777766554
No 328
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.34 E-value=6.2 Score=22.78 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=18.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcC
Q 042593 211 IISGFAMHGMGKEAVENFERMQKVG 235 (352)
Q Consensus 211 li~~~~~~~~~~~a~~~~~~m~~~~ 235 (352)
|..+|...|+.+.|.++++++...|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5567777778888888777777543
No 329
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=75.07 E-value=6.9 Score=22.57 Aligned_cols=22 Identities=9% Similarity=0.010 Sum_probs=10.6
Q ss_pred HHHHHhCCChhhHHHHHHHHHh
Q 042593 143 LPAIWKNGEVRNCQLIHGYGEK 164 (352)
Q Consensus 143 l~~~~~~~~~~~a~~~~~~~~~ 164 (352)
..+|...|+.+.|..+++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444444555555555544443
No 330
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=75.00 E-value=5.7 Score=33.76 Aligned_cols=29 Identities=14% Similarity=0.121 Sum_probs=20.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCC
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYT 132 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 132 (352)
||..|....+.||+++|+.++++. ++-|+
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEA-e~LG~ 288 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEA-ERLGS 288 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-HHhCC
Confidence 667777777777777777777777 55554
No 331
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.99 E-value=87 Score=30.65 Aligned_cols=75 Identities=11% Similarity=0.185 Sum_probs=46.1
Q ss_pred CCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHH---------HhCCCC-------chhhHHHHHHHHHhcCChhHHH
Q 042593 16 SPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFS---------KVGFQS-------HVYVNTALGDMYVSLGFLKDSS 79 (352)
Q Consensus 16 g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~---------~~~~~~-------~~~~~~~li~~~~~~g~~~~a~ 79 (352)
+..||.++...|..+|..+.. .+.....++...-. ....+| +...-..|+..|...+++++|.
T Consensus 447 Pt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al 525 (846)
T KOG2066|consen 447 PTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLYDNKYEKAL 525 (846)
T ss_pred CCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHHccChHHHH
Confidence 344667788999999999988 44433333322210 001111 2223445888888888999998
Q ss_pred HHhccCCCCCch
Q 042593 80 KLFDELPERNLV 91 (352)
Q Consensus 80 ~~~~~m~~~~~~ 91 (352)
.++-..+++++.
T Consensus 526 ~~ylklk~~~vf 537 (846)
T KOG2066|consen 526 PIYLKLQDKDVF 537 (846)
T ss_pred HHHHhccChHHH
Confidence 888888765543
No 332
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=74.66 E-value=15 Score=24.70 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=48.3
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE 87 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 87 (352)
+...|...++.....+.-+ .++|+.....|+..|+..|.++++...-.=-++...++++.|-.
T Consensus 9 ~~~~~k~~~~rk~~Ls~eE--~EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 9 TAQVYKYSLRRKKVLSAEE--VELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred hHHHHHHHHHHHhccCHHH--HHHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 5666776665544443222 28999999999999999999999999888788888888888753
No 333
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=74.34 E-value=24 Score=23.88 Aligned_cols=66 Identities=9% Similarity=0.047 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHH
Q 042593 155 CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225 (352)
Q Consensus 155 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 225 (352)
+.++++.+.+.|+- +......+-.+-...|+.+.|.++++.+. .+|+ .|..+++++...|..+-|.
T Consensus 21 ~~~v~d~ll~~~il--T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~--aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL--TEEDRNRIEAATENHGNESGARELLKRIV-QKEG--WFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC--CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCc--HHHHHHHHHHHcCchhhhh
Confidence 44566666666654 34444444433345577777777777775 4443 5667777777776655554
No 334
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=74.20 E-value=27 Score=24.41 Aligned_cols=78 Identities=17% Similarity=0.200 Sum_probs=50.2
Q ss_pred hhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 042593 152 VRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231 (352)
Q Consensus 152 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 231 (352)
.++|..+-+-+...+-. ...+--+-+..+...|++++|..+.+.. ..||...|-+|.. .+.|..+++..-+.+|
T Consensus 21 HqEA~tIAdwL~~~~~~--~E~v~lIRlsSLmNrG~Yq~Al~l~~~~--~~pdlepw~ALce--~rlGl~s~l~~rl~rl 94 (115)
T TIGR02508 21 HQEANTIADWLHLKGES--EEAVQLIRLSSLMNRGDYQSALQLGNKL--CYPDLEPWLALCE--WRLGLGSALESRLNRL 94 (115)
T ss_pred HHHHHHHHHHHhcCCch--HHHHHHHHHHHHHccchHHHHHHhcCCC--CCchHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 45565555555544321 2222223445567888888888888877 4788888877654 4667777777777777
Q ss_pred HhcC
Q 042593 232 QKVG 235 (352)
Q Consensus 232 ~~~~ 235 (352)
..+|
T Consensus 95 a~sg 98 (115)
T TIGR02508 95 AASG 98 (115)
T ss_pred HhCC
Confidence 7665
No 335
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.90 E-value=9.2 Score=25.29 Aligned_cols=45 Identities=9% Similarity=-0.025 Sum_probs=26.4
Q ss_pred hhCChHHHHHHHHHhccCCCC----HhhHHHHHHHHHcCCCHHHHHHHH
Q 042593 184 KCGCIFSASKLFEDTSVDRKN----LVSWTTIISGFAMHGMGKEAVENF 228 (352)
Q Consensus 184 ~~g~~~~a~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~ 228 (352)
...+.++|+..|....+..++ -.++..|+.+|+.-|++.+++..-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666665544222 244566677777777776665543
No 336
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=73.74 E-value=7.1 Score=19.20 Aligned_cols=20 Identities=30% Similarity=0.330 Sum_probs=8.3
Q ss_pred HHHHHHhhCChHHHHHHHHH
Q 042593 178 LIDTYAKCGCIFSASKLFED 197 (352)
Q Consensus 178 li~~~~~~g~~~~a~~~~~~ 197 (352)
+..++...|+++.|...|+.
T Consensus 7 ~a~~~~~~~~~~~a~~~~~~ 26 (34)
T smart00028 7 LGNAYLKLGDYDEALEYYEK 26 (34)
T ss_pred HHHHHHHHhhHHHHHHHHHH
Confidence 33344444444444444433
No 337
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.21 E-value=46 Score=26.58 Aligned_cols=129 Identities=9% Similarity=0.005 Sum_probs=81.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh-h--HHHHHHHHHhCCChhhHHHHHHHHHhcCCCC-CchhhHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI-T--ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNA-FDIHVSNCL 178 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-t--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l 178 (352)
|..++.... .+.. +.....+++ ...+. -+.+ + -..+...+...+++++|+.-++......... ....+--.|
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf-~~~n~-~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRL 132 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKF-VQANG-KTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRL 132 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHH-Hhhcc-ccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 666666553 3444 455555666 22211 1221 2 2244556788999999999998776442221 011122345
Q ss_pred HHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 042593 179 IDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235 (352)
Q Consensus 179 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 235 (352)
.+.....|.+|+|+..++......-.......--+.+...|+-++|..-|+..++.+
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 667788999999999999875433333334445578999999999999999988875
No 338
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=73.04 E-value=78 Score=29.17 Aligned_cols=107 Identities=8% Similarity=0.059 Sum_probs=73.0
Q ss_pred hCCChhhHHH-HHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHH
Q 042593 148 KNGEVRNCQL-IHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAV 225 (352)
Q Consensus 148 ~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~ 225 (352)
..|++..|-+ ++..+....- ++......-..+...|+++.+...+....+. .....+-.+++....+.|++++|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~---~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQ---DPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCC---CchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 4466555543 3444433332 3333334445677889999999998877544 456678889999999999999999
Q ss_pred HHHHHHHhcCCCCCcchhh----------hHhHHHHHHHHHH
Q 042593 226 ENFERMQKVGLKPNRSWRI----------GEEGLKFFDKMVE 257 (352)
Q Consensus 226 ~~~~~m~~~~~~p~~~~~~----------~~~a~~~~~~m~~ 257 (352)
.+-.-|....++....... .+++...|.++..
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 9999999877754433322 6777777777664
No 339
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=72.83 E-value=62 Score=27.99 Aligned_cols=160 Identities=12% Similarity=0.076 Sum_probs=83.7
Q ss_pred ChhHHHHHhccC-C-CCCchhHHHHHHHHHhHHHHHHHHHhcC-CHHH-----HHHHHHHhHhccCCCCC--hh-----h
Q 042593 74 FLKDSSKLFDEL-P-ERNLVTWNVIITGLVKWTGIIDGYSRMN-RSNE-----ALALFRRMAACEYTEPS--EI-----T 138 (352)
Q Consensus 74 ~~~~a~~~~~~m-~-~~~~~~~~~~i~~~~~~~~li~~~~~~~-~~~~-----a~~~~~~m~~~~~~~p~--~~-----t 138 (352)
.++.+.++...+ . +++...|..++.. .+.+.+.+...+ .... ..+++..+.+.-|..+. .. .
T Consensus 55 ~~~~~l~l~~~~~~~E~~~~vw~~~~~~---l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l 131 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPNETDYVVWSTALSN---LSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLL 131 (324)
T ss_dssp -HHHHHHHHGGG-GT--SHHHHHHHHHH---HHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHH
T ss_pred CHHHHHHHHHHhccCCCchHHHHHHHHH---HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHH
Confidence 356677777777 3 4666676665554 333332222111 1111 11233333233344443 22 2
Q ss_pred HHHHHHHHHhCCC---hhhHHHHHHHHHhcCCC---CCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHH
Q 042593 139 ILAVLPAIWKNGE---VRNCQLIHGYGEKRGFN---AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTII 212 (352)
Q Consensus 139 ~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li 212 (352)
-..++...+ |+ .+.|.+.++.....+.. ..++.....++....+.|+.+.-..+++... ..++...-..++
T Consensus 132 r~~~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~-~~~~~~~k~~~l 208 (324)
T PF11838_consen 132 RALLLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYK-NSTSPEEKRRLL 208 (324)
T ss_dssp HHHHHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHH-TTSTHHHHHHHH
T ss_pred HHHHHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHh-ccCCHHHHHHHH
Confidence 223344444 43 45677777777764222 2256666777777888888666555555543 456778888999
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcC-CCCC
Q 042593 213 SGFAMHGMGKEAVENFERMQKVG-LKPN 239 (352)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~m~~~~-~~p~ 239 (352)
.+++...+.+...++++.....+ +++.
T Consensus 209 ~aLa~~~d~~~~~~~l~~~l~~~~v~~~ 236 (324)
T PF11838_consen 209 SALACSPDPELLKRLLDLLLSNDKVRSQ 236 (324)
T ss_dssp HHHTT-S-HHHHHHHHHHHHCTSTS-TT
T ss_pred HhhhccCCHHHHHHHHHHHcCCcccccH
Confidence 99999999999999999888854 4443
No 340
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=72.64 E-value=47 Score=26.44 Aligned_cols=67 Identities=9% Similarity=0.116 Sum_probs=34.0
Q ss_pred CCCCCCCCcccHHHHHHHHHhcCCcc----hHHHHHHHHHHhCCCCc----hhhHHHHHHHHHhcCChhHHHHHhccC
Q 042593 16 SPLPPLFDSFTYSFLIRTCVTLSYPN----LGTQLHAVFSKVGFQSH----VYVNTALGDMYVSLGFLKDSSKLFDEL 85 (352)
Q Consensus 16 g~~P~~~~~~~~~~ll~~~~~~g~~~----~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m 85 (352)
|..+ |...++.+++.+.+..-.. .+..+=......++.++ ....-.=+..|-+.||+.+-=.+|-..
T Consensus 3 Gm~l---~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv 77 (233)
T PF14669_consen 3 GMVL---DPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINV 77 (233)
T ss_pred cccC---CHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhH
Confidence 4555 8888888887777654333 33333333333343332 222333344555566666555554443
No 341
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=72.60 E-value=35 Score=26.80 Aligned_cols=74 Identities=18% Similarity=0.115 Sum_probs=41.5
Q ss_pred hHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhC----C-------hHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHH
Q 042593 154 NCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG----C-------IFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGK 222 (352)
Q Consensus 154 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~-------~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 222 (352)
+|..-+++.... .|....++..+..+|...+ + +++|.+.|+......|+..+|+.-+....
T Consensus 53 dAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~------ 124 (186)
T PF06552_consen 53 DAISKFEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA------ 124 (186)
T ss_dssp HHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH------
T ss_pred HHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH------
Confidence 334444444444 4435567777777776544 2 44455555555445899899988887653
Q ss_pred HHHHHHHHHHhcC
Q 042593 223 EAVENFERMQKVG 235 (352)
Q Consensus 223 ~a~~~~~~m~~~~ 235 (352)
+|-++..++.+++
T Consensus 125 kap~lh~e~~~~~ 137 (186)
T PF06552_consen 125 KAPELHMEIHKQG 137 (186)
T ss_dssp THHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHH
Confidence 4666666666654
No 342
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=72.21 E-value=44 Score=25.95 Aligned_cols=41 Identities=10% Similarity=0.096 Sum_probs=29.7
Q ss_pred HHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccC
Q 042593 45 QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85 (352)
Q Consensus 45 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 85 (352)
+.++.+.+.+++|+...+..+++.+.+.|++.....++.-=
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~ 55 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYH 55 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhc
Confidence 45555666778888888888888888888877766666543
No 343
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=72.11 E-value=6.5 Score=24.66 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=23.1
Q ss_pred HHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 189 ~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
+...++++.+....-|-.---.+|.+|...|++++|.++.+++.+
T Consensus 7 ~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 7 EELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444444432233333333456677777777777777766654
No 344
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=72.03 E-value=49 Score=28.46 Aligned_cols=75 Identities=12% Similarity=0.075 Sum_probs=56.9
Q ss_pred hhhHHHHHHhhccCCCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHh----------
Q 042593 2 LVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS---------- 71 (352)
Q Consensus 2 ~~~~~M~~~~~~~~g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---------- 71 (352)
++|+.|++ .++.| .-.+|.-+.-.+.+.-.+..++.+|+.+.... .-|..|+..||.
T Consensus 264 EL~~~L~~-----~~i~P---qfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~-----~rfd~Ll~iCcsmlil~Re~il 330 (370)
T KOG4567|consen 264 ELWRHLEE-----KEIHP---QFYAFRWITLLLSQEFPLPDVIRLWDSLLSDP-----QRFDFLLYICCSMLILVRERIL 330 (370)
T ss_pred HHHHHHHh-----cCCCc---cchhHHHHHHHHhccCCchhHHHHHHHHhcCh-----hhhHHHHHHHHHHHHHHHHHHH
Confidence 67888888 88889 88888888888888888899999998887533 226667777764
Q ss_pred cCChhHHHHHhccCCCCC
Q 042593 72 LGFLKDSSKLFDELPERN 89 (352)
Q Consensus 72 ~g~~~~a~~~~~~m~~~~ 89 (352)
.|++....++++.-..-|
T Consensus 331 ~~DF~~nmkLLQ~yp~td 348 (370)
T KOG4567|consen 331 EGDFTVNMKLLQNYPTTD 348 (370)
T ss_pred hcchHHHHHHHhcCCCCC
Confidence 477777777777664433
No 345
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=72.00 E-value=28 Score=23.60 Aligned_cols=66 Identities=6% Similarity=0.013 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHH
Q 042593 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120 (352)
Q Consensus 43 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~ 120 (352)
+.++++.+.+.|+ .+....+.+-.+-...|+.+.|.+++..+. +.+.. |...+.++-..|.-+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~a----------F~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGW----------FSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcH----------HHHHHHHHHHcCchhhhh
Confidence 5578888888884 344445444444446799999999999998 77777 777888887777665543
No 346
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=71.52 E-value=49 Score=28.45 Aligned_cols=77 Identities=12% Similarity=0.108 Sum_probs=40.6
Q ss_pred hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHHHhcccccCcccccccc
Q 042593 245 GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQR 324 (352)
Q Consensus 245 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 324 (352)
+++......+-.++ .--|+......+-++....+.|.+-+++..+-.-+ ...+|.-|+.+++.+|+.+-++-+--|+
T Consensus 271 ~~evi~~VKee~k~-~nlPe~eVi~ivWs~iMsaveWnKkeelva~qalr--hlK~yaPLL~af~s~g~sEL~Ll~KvQe 347 (412)
T KOG2297|consen 271 VKEVILYVKEEMKR-NNLPETEVIGIVWSGIMSAVEWNKKEELVAEQALR--HLKQYAPLLAAFCSQGQSELELLLKVQE 347 (412)
T ss_pred HHHHHHHHHHHHHh-cCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHHH--HHHhhhHHHHHHhcCChHHHHHHHHHHH
Confidence 34444444443333 33455544333333333444444433333221112 4567999999999999988766544444
No 347
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=71.10 E-value=24 Score=25.85 Aligned_cols=46 Identities=7% Similarity=-0.039 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC
Q 042593 155 CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201 (352)
Q Consensus 155 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 201 (352)
..+.+..+....+.| ++.+...-++++.+.+|+..|.++|+.++.+
T Consensus 68 vrkglN~l~~yDlVP-~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVP-SPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 444555555566666 6666667777777777777777777666544
No 348
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=70.88 E-value=65 Score=27.36 Aligned_cols=92 Identities=14% Similarity=-0.002 Sum_probs=64.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
...=|.+++..|+|.+++...-+- -...-+.........|--|.+.+....+.++-.......-+- +..-|..+.+.|
T Consensus 86 cvvGIQALAEmnrWreVLsWvlqy-Yq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq-~lp~y~~vaELy 163 (309)
T PF07163_consen 86 CVVGIQALAEMNRWREVLSWVLQY-YQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQ-SLPEYGTVAELY 163 (309)
T ss_pred hhhhHHHHHHHhhHHHHHHHHHHH-hcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccC-CchhhHHHHHHH
Confidence 344568899999999988876554 222222233456666777899999999998888887654443 455577777766
Q ss_pred Hh-----hCChHHHHHHHH
Q 042593 183 AK-----CGCIFSASKLFE 196 (352)
Q Consensus 183 ~~-----~g~~~~a~~~~~ 196 (352)
.. .|.+++|+++..
T Consensus 164 Ll~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 164 LLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred HHHHHhccccHHHHHHHHh
Confidence 54 699999999873
No 349
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=70.61 E-value=48 Score=26.67 Aligned_cols=92 Identities=9% Similarity=-0.080 Sum_probs=39.1
Q ss_pred HHhcCCHHHHHHHHHHhHhccCCCCC---hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhC
Q 042593 110 YSRMNRSNEALALFRRMAACEYTEPS---EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG 186 (352)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 186 (352)
+...|++++|..-|.+.+......+. ...|..-.-++.+.+.++.|..--....+.+.. .......-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt--y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT--YEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch--hHHHHHHHHHHHHhhh
Confidence 34455666666665555332211111 112333334444555555554444443333322 2222222233455555
Q ss_pred ChHHHHHHHHHhccCCC
Q 042593 187 CIFSASKLFEDTSVDRK 203 (352)
Q Consensus 187 ~~~~a~~~~~~~~~~~~ 203 (352)
+++.|+.=|..+....|
T Consensus 183 k~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDP 199 (271)
T ss_pred hHHHHHHHHHHHHHhCc
Confidence 55555555555544333
No 350
>PHA02875 ankyrin repeat protein; Provisional
Probab=70.53 E-value=83 Score=28.44 Aligned_cols=210 Identities=8% Similarity=-0.021 Sum_probs=106.4
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhCCCCchhh--HHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHH
Q 042593 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYV--NTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIID 108 (352)
Q Consensus 31 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~ 108 (352)
+...++.|+.+. .+.+.+.|..|+... ....+...+..|+.+-+.-+++.=..++..... ....+.
T Consensus 6 L~~A~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~--------~~t~L~ 73 (413)
T PHA02875 6 LCDAILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPD--------IESELH 73 (413)
T ss_pred HHHHHHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCC--------cccHHH
Confidence 445556677644 455556787766533 344566677888888777766653333322100 112344
Q ss_pred HHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhh--HHHHHHHHHhhC
Q 042593 109 GYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHV--SNCLIDTYAKCG 186 (352)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g 186 (352)
..+..|+.+.+..+++.- ....-..+..- .+.+...+..|+.+ +.+.+.+.|..+ +... -...+...+..|
T Consensus 74 ~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~g-~tpL~~A~~~~~~~----iv~~Ll~~gad~-~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 74 DAVEEGDVKAVEELLDLG-KFADDVFYKDG-MTPLHLATILKKLD----IMKLLIARGADP-DIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred HHHHCCCHHHHHHHHHcC-CcccccccCCC-CCHHHHHHHhCCHH----HHHHHHhCCCCC-CCCCCCCCCHHHHHHHcC
Confidence 556788888776666543 11110111111 23344455667654 444555556554 3221 123455666788
Q ss_pred ChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh----------hHhHHHHHHHH
Q 042593 187 CIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI----------GEEGLKFFDKM 255 (352)
Q Consensus 187 ~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----------~~~a~~~~~~m 255 (352)
+.+-+.-+++.-... ..|..-.+.|.. .+..|+.+ +.+.+.+.|..++..... ...-.++.+.+
T Consensus 147 ~~~~v~~Ll~~g~~~~~~d~~g~TpL~~-A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~L 221 (413)
T PHA02875 147 DIKGIELLIDHKACLDIEDCCGCTPLII-AMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLF 221 (413)
T ss_pred CHHHHHHHHhcCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHH
Confidence 887777666543211 223233333333 34456644 455566677766543221 22223455666
Q ss_pred HHhcCCCCCh
Q 042593 256 VEECEVLPDI 265 (352)
Q Consensus 256 ~~~~~~~p~~ 265 (352)
.+. |..++.
T Consensus 222 l~~-gad~n~ 230 (413)
T PHA02875 222 IKR-GADCNI 230 (413)
T ss_pred HHC-CcCcch
Confidence 665 766654
No 351
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=70.01 E-value=60 Score=27.88 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=20.6
Q ss_pred CChhhHHHHHHHHHHcCChhHHHH
Q 042593 263 PDIKHYGCLIDILERAGRLEQAEE 286 (352)
Q Consensus 263 p~~~~~~~li~~~~~~g~~~~A~~ 286 (352)
-|+..|..+..+|.-.|+.+.+.+
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~~d 218 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSAMD 218 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHHHH
Confidence 688899999999999998777653
No 352
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=69.90 E-value=10 Score=32.33 Aligned_cols=46 Identities=13% Similarity=0.044 Sum_probs=36.4
Q ss_pred cCCCCChhh-HHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHH
Q 042593 130 EYTEPSEIT-ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN 176 (352)
Q Consensus 130 ~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 176 (352)
..+.||..+ |+.-|....+.||+++|+.++++.++.|+.. -..+|-
T Consensus 250 ~~v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~-Ar~tFi 296 (303)
T PRK10564 250 EPMLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTS-ARSTFI 296 (303)
T ss_pred CccCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch-HHHHHH
Confidence 345567664 6799999999999999999999999999875 444543
No 353
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=69.61 E-value=11 Score=31.86 Aligned_cols=59 Identities=19% Similarity=0.134 Sum_probs=39.6
Q ss_pred cHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccC
Q 042593 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDEL 85 (352)
Q Consensus 26 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 85 (352)
+++.+.+.|...|.+.+|.++.+...... +.+...+-.|+..+...|+--.|.+-++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34555566777777777777777766655 556677777777777777766665555544
No 354
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=69.55 E-value=13 Score=29.66 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=24.2
Q ss_pred HHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 196 EDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 196 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
++.....|+..+|..++.++...|+.++|.+...++..
T Consensus 135 ~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 135 ERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333466777777777777777777777666666654
No 355
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.54 E-value=1.3e+02 Score=30.11 Aligned_cols=173 Identities=11% Similarity=0.022 Sum_probs=88.4
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHhCCCCchh--hHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHH
Q 042593 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY--VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGII 107 (352)
Q Consensus 30 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li 107 (352)
+=+.|.+.|+++.|+++-+ -.|+.. .+-.-.+.|...+++..|.+++.++.++ |..+.
T Consensus 364 vWk~yLd~g~y~kAL~~ar------~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~--------------FEEVa 423 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIAR------TRPDALETVLLKQADFLFQDKEYLRAAEIYAETLSS--------------FEEVA 423 (911)
T ss_pred HHHHHHhcchHHHHHHhcc------CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--------------HHHHH
Confidence 3456667777777766522 223332 2333445666778888888888887432 33333
Q ss_pred HHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHH-----HHHH-HHhCCChh----hHHHHH--------HHHHhcCCCC
Q 042593 108 DGYSRMNRSNEALALFRRMAACEYTEPSEITILA-----VLPA-IWKNGEVR----NCQLIH--------GYGEKRGFNA 169 (352)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~-----ll~~-~~~~~~~~----~a~~~~--------~~~~~~~~~~ 169 (352)
--+...++.+ ++..|-.= +...+.|...+-.. ++.. +.+.++++ ++..-+ +++...-...
T Consensus 424 LKFl~~~~~~-~L~~~L~K-KL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~ 501 (911)
T KOG2034|consen 424 LKFLEINQER-ALRTFLDK-KLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLH 501 (911)
T ss_pred HHHHhcCCHH-HHHHHHHH-HHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444555554 55555444 44444444333222 1111 22333333 121111 1111111111
Q ss_pred CchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 042593 170 FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231 (352)
Q Consensus 170 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 231 (352)
.+...+.+..+.....|+.+.+..+-.-| .-|..++..+++++++++|.+++..-
T Consensus 502 ~~~~nretv~~l~~~~~~~e~ll~fA~l~-------~d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 502 KDELNRETVYQLLASHGRQEELLQFANLI-------KDYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHhhhHHHHHHHHHHccCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12233334445555666666666655555 34777788888888888888877653
No 356
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=69.48 E-value=42 Score=24.61 Aligned_cols=58 Identities=10% Similarity=0.027 Sum_probs=44.8
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHH
Q 042593 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197 (352)
Q Consensus 138 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 197 (352)
-|..+--.|++.-+ .+..+|+.|...|+....+..|......+...|++++|.++|+.
T Consensus 67 RylkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 67 RYLKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34444444555433 89999999999988775778889999999999999999999875
No 357
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=69.13 E-value=19 Score=25.57 Aligned_cols=43 Identities=12% Similarity=0.013 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhc
Q 042593 29 FLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL 72 (352)
Q Consensus 29 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 72 (352)
+++.-+.+....++|+++++.|.++| .-+...-+.|-..+.+.
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~k 108 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILVKK 108 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 45667777888899999999999998 66666666555544433
No 358
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=68.80 E-value=39 Score=23.96 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=49.1
Q ss_pred CChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHH
Q 042593 150 GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFE 229 (352)
Q Consensus 150 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 229 (352)
...++|..+.+-+...+.. ...+--+-+..+.+.|+++.| +........||...|-+|.. .+.|..+++..-+.
T Consensus 20 HcH~EA~tIa~wL~~~~~~--~E~v~lIr~~sLmNrG~Yq~A--Ll~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGEM--EEVVALIRLSSLMNRGDYQEA--LLLPQCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp T-HHHHHHHHHHHHHTTTT--HHHHHHHHHHHHHHTT-HHHH--HHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHHHhhHHHHHH--HHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 4567777888777776642 344444556667788888888 33333334788887776653 57777788888777
Q ss_pred HHHhcC
Q 042593 230 RMQKVG 235 (352)
Q Consensus 230 ~m~~~~ 235 (352)
++..+|
T Consensus 94 rla~~g 99 (116)
T PF09477_consen 94 RLASSG 99 (116)
T ss_dssp HHCT-S
T ss_pred HHHhCC
Confidence 776654
No 359
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=68.49 E-value=18 Score=21.21 Aligned_cols=37 Identities=8% Similarity=-0.056 Sum_probs=30.2
Q ss_pred HHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHH
Q 042593 32 RTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDM 68 (352)
Q Consensus 32 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 68 (352)
...-+.|-..++..+++.|.+.|+.-+...+..++..
T Consensus 10 ~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 10 LLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 3455778888999999999999998888888877653
No 360
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.46 E-value=23 Score=28.12 Aligned_cols=53 Identities=8% Similarity=-0.085 Sum_probs=25.8
Q ss_pred hcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 042593 112 RMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164 (352)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 164 (352)
...+.+......+.+++.-...|+..+|..++.++...|+.++|.+..+++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444433333333323233445555555555555555555555555555543
No 361
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=67.33 E-value=63 Score=28.20 Aligned_cols=20 Identities=15% Similarity=0.101 Sum_probs=9.1
Q ss_pred HHHHHhhCChHHHHHHHHHh
Q 042593 179 IDTYAKCGCIFSASKLFEDT 198 (352)
Q Consensus 179 i~~~~~~g~~~~a~~~~~~~ 198 (352)
.+++...||+.++.+.+++.
T Consensus 122 ~r~~L~i~DLk~~kk~ldd~ 141 (380)
T KOG2908|consen 122 ARLKLEINDLKEIKKLLDDL 141 (380)
T ss_pred HHHHHhcccHHHHHHHHHHH
Confidence 33444445555444444443
No 362
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=67.10 E-value=69 Score=26.19 Aligned_cols=26 Identities=8% Similarity=-0.289 Sum_probs=16.7
Q ss_pred hhhHHHHHHHHhcccccCcccccccc
Q 042593 299 VVWRTGFLRLLINSYFFSPITLNSQR 324 (352)
Q Consensus 299 ~~~~~li~~~~~~g~~~~a~~~~~~~ 324 (352)
.||-.|.+-+...|+..+|..+++-.
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLa 263 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLA 263 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHH
Confidence 45556666666777777766666655
No 363
>PRK09687 putative lyase; Provisional
Probab=66.60 E-value=82 Score=26.89 Aligned_cols=186 Identities=9% Similarity=-0.077 Sum_probs=113.9
Q ss_pred CcccHHHHHHHHHhcCCcc----hHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCCh-----hHHHHHhcc-CCCCCchh
Q 042593 23 DSFTYSFLIRTCVTLSYPN----LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL-----KDSSKLFDE-LPERNLVT 92 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~----~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-----~~a~~~~~~-m~~~~~~~ 92 (352)
|...=...+.++++.|+.+ ++..++..+... .++...-...+.+++..+.. ..+...+.. +..++...
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~V 144 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNV 144 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHH
Confidence 6666677788888888754 466666655333 36666666666666665431 233444433 33455444
Q ss_pred HHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCC-ChhhHHHHHHHHHhcCCCCCc
Q 042593 93 WNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG-EVRNCQLIHGYGEKRGFNAFD 171 (352)
Q Consensus 93 ~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~ 171 (352)
--..+.++++.++. .+...+-.+.. .+|...-...+.++.+.+ +.+.+...+..+.. .+ +
T Consensus 145 ----------R~~a~~aLg~~~~~-~ai~~L~~~L~----d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~-~ 205 (280)
T PRK09687 145 ----------RFAVAFALSVINDE-AAIPLLINLLK----DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DK-N 205 (280)
T ss_pred ----------HHHHHHHHhccCCH-HHHHHHHHHhc----CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CC-C
Confidence 44566677777764 55666666523 355556666666676653 23445555555543 33 7
Q ss_pred hhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
..+-...+.++++.|+....-.+.+.+. .++ ..-..+.++...|.. +|...+.++.+.
T Consensus 206 ~~VR~~A~~aLg~~~~~~av~~Li~~L~--~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~ 263 (280)
T PRK09687 206 EEIRIEAIIGLALRKDKRVLSVLIKELK--KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK 263 (280)
T ss_pred hHHHHHHHHHHHccCChhHHHHHHHHHc--CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh
Confidence 7778888999999998544444444442 233 234677888888885 788888888763
No 364
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.45 E-value=66 Score=25.72 Aligned_cols=129 Identities=9% Similarity=-0.020 Sum_probs=79.1
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHhccCCCCC-chhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh
Q 042593 59 VYVNTALGDMYVSLGFLKDSSKLFDELPERN-LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137 (352)
Q Consensus 59 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 137 (352)
...|..++.... .+.+ +.....+++...+ ..+|-.+- --.+...+...|++++|...++.... .|...
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~la-----aL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De 122 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLA-----ALELAKAEVEANNLDKAEAQLKQALA----QTKDE 122 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHH-----HHHHHHHHHhhccHHHHHHHHHHHHc----cchhH
Confidence 445666666554 2333 4444445544433 44433322 22345778888999999988887622 23333
Q ss_pred hHH-----HHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC
Q 042593 138 TIL-----AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201 (352)
Q Consensus 138 t~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 201 (352)
.+. -+.+.....|..++|...++.....+.. ......-.+++...|+-++|..-|......
T Consensus 123 ~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~---~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 123 NLKALAALRLARVQLQQKKADAALKTLDTIKEESWA---AIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH---HHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 333 3344566788899999888877665542 233445577888899999999888876544
No 365
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=66.31 E-value=54 Score=24.73 Aligned_cols=82 Identities=6% Similarity=0.090 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccC----CCCChhhHHHHHHHHHhCCC-hhhHHHHHHHHHhcCCCCCchhhHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEY----TEPSEITILAVLPAIWKNGE-VRNCQLIHGYGEKRGFNAFDIHVSNC 177 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~ 177 (352)
.|.++.-.+..+++...+.+++.+..... -..+...|.+++++.++... --.+..++..+++.+... +..-|..
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~-t~~dy~~ 120 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEF-TPSDYSC 120 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCC-CHHHHHH
Confidence 56666666666777777776666621111 02344567777777765555 344566677777666666 7777777
Q ss_pred HHHHHHhh
Q 042593 178 LIDTYAKC 185 (352)
Q Consensus 178 li~~~~~~ 185 (352)
+|.++.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77776654
No 366
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=65.54 E-value=46 Score=23.63 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHhhCChHHHHHHHHHhcc
Q 042593 173 HVSNCLIDTYAKCGCIFSASKLFEDTSV 200 (352)
Q Consensus 173 ~~~~~li~~~~~~g~~~~a~~~~~~~~~ 200 (352)
.-|..|+..|...|..++|++++.+...
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3477888888888888888888887765
No 367
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=65.20 E-value=66 Score=25.79 Aligned_cols=60 Identities=7% Similarity=0.069 Sum_probs=42.7
Q ss_pred ccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchh-hHHHHHHHHHhcCChhHHHHHhccC
Q 042593 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY-VNTALGDMYVSLGFLKDSSKLFDEL 85 (352)
Q Consensus 25 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m 85 (352)
...+.++..|.-.|+++.|-++|..+.+.. +.|.. .|..=+..+.+.+.-....+.++.|
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 457889999999999999999999998764 34443 3666666666666555554555544
No 368
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=64.96 E-value=1.5e+02 Score=29.36 Aligned_cols=109 Identities=11% Similarity=0.024 Sum_probs=72.9
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHH---hcCChhHHHHHhccCCC--CCchhHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV---SLGFLKDSSKLFDELPE--RNLVTWNVII 97 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~---~~g~~~~a~~~~~~m~~--~~~~~~~~~i 97 (352)
+...++.||..+-+.|+++.....-..|.+.- +.++..|-..+.... ..+...++..+|++... .++..|.-.+
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~~v~iw~e~~ 190 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYNSVPIWEEVV 190 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccccchHHHHHH
Confidence 55668889999999999999888888887754 556677765555443 23677788888888664 4555655544
Q ss_pred HHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC
Q 042593 98 TGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS 135 (352)
Q Consensus 98 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 135 (352)
+. ..-.+..+-+.++++....+|.+.++..|...+
T Consensus 191 ~y---~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t 225 (881)
T KOG0128|consen 191 NY---LVGFGNVAKKSEDYKKERSVFERALRSLGSHIT 225 (881)
T ss_pred HH---HHhccccccccccchhhhHHHHHHHhhhhhhhc
Confidence 33 122223344457788888888888666665443
No 369
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=64.70 E-value=25 Score=20.65 Aligned_cols=32 Identities=9% Similarity=0.198 Sum_probs=18.6
Q ss_pred HhCCChhhHHHHHHHHHhcCCCCCchhhHHHHH
Q 042593 147 WKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179 (352)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 179 (352)
.+.|-++++..++++|.+.|+.. +...+..++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~i-s~~l~~~~L 44 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRI-SPKLIEEIL 44 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCccc-CHHHHHHHH
Confidence 34555666666666666666655 555555444
No 370
>PRK11619 lytic murein transglycosylase; Provisional
Probab=64.05 E-value=1.5e+02 Score=28.95 Aligned_cols=85 Identities=8% Similarity=-0.028 Sum_probs=48.0
Q ss_pred CCChhhHHHHHHHHHhcC-CCCC-chhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHH
Q 042593 149 NGEVRNCQLIHGYGEKRG-FNAF-DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVE 226 (352)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~-~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 226 (352)
..+.+.|...+....... ..+. ...++..+.......+..+.|...++.......+......-+..-.+.++++.+..
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~ 333 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNT 333 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHH
Confidence 345677888887764443 2220 12233344333333333566777777654343444555555555568888888888
Q ss_pred HHHHHHh
Q 042593 227 NFERMQK 233 (352)
Q Consensus 227 ~~~~m~~ 233 (352)
.+..|-.
T Consensus 334 ~i~~L~~ 340 (644)
T PRK11619 334 WLARLPM 340 (644)
T ss_pred HHHhcCH
Confidence 8887644
No 371
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=63.68 E-value=1.6e+02 Score=33.14 Aligned_cols=118 Identities=8% Similarity=-0.008 Sum_probs=74.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhccCCC--CChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q 042593 106 IIDGYSRMNRSNEALALFRRMAACEYTE--PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183 (352)
Q Consensus 106 li~~~~~~~~~~~a~~~~~~m~~~~~~~--p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 183 (352)
+..+-.+.+.+.+|+..+++- .....+ -...-|-.+...|+..++.|++..+...... +...+ ..|--..
T Consensus 1389 La~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a------~~sl~-~qil~~e 1460 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA------DPSLY-QQILEHE 1460 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc------CccHH-HHHHHHH
Confidence 334555677788888887773 111111 1122344444488888888888877764111 22333 3455667
Q ss_pred hhCChHHHHHHHHHhccCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 042593 184 KCGCIFSASKLFEDTSVDRKN-LVSWTTIISGFAMHGMGKEAVENFERM 231 (352)
Q Consensus 184 ~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m 231 (352)
..|++..|...|+.+.+..|+ ..+++-++......|.++.+....+-.
T Consensus 1461 ~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~ 1509 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGL 1509 (2382)
T ss_pred hhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcch
Confidence 788899999999988877665 777887777777777777766644433
No 372
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=63.59 E-value=1.4e+02 Score=28.35 Aligned_cols=165 Identities=12% Similarity=0.028 Sum_probs=88.5
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh
Q 042593 58 HVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137 (352)
Q Consensus 58 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 137 (352)
+..+|+.-++.-.+.|+.+.+.-+|+...-|-.. |.-. |-..+.-.-..|+.+-|..++... ..-- .|+..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~-Y~ef------Wiky~~~m~~~~~~~~~~~~~~~~-~~i~-~k~~~ 366 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL-YDEF------WIKYARWMESSGDVSLANNVLARA-CKIH-VKKTP 366 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh-hHHH------HHHHHHHHHHcCchhHHHHHHHhh-hhhc-CCCCc
Confidence 3456777777777788888888887776543111 1111 222222233337777776665554 2221 22222
Q ss_pred hHHHHHHHH-HhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHH---HHHHHhccCCCCHhhHHHHHH
Q 042593 138 TILAVLPAI-WKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSAS---KLFEDTSVDRKNLVSWTTIIS 213 (352)
Q Consensus 138 t~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~---~~~~~~~~~~~~~~~~~~li~ 213 (352)
....+-..+ -..|+.+.|..+++.+.+.- |....+-..-+....+.|..+.+. +++........+..+.+.+.-
T Consensus 367 ~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~ 444 (577)
T KOG1258|consen 367 IIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYV 444 (577)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHH
Confidence 222222222 34568888888888877664 313344445566667777777777 444444333333333333322
Q ss_pred H-----HHcCCCHHHHHHHHHHHHh
Q 042593 214 G-----FAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 214 ~-----~~~~~~~~~a~~~~~~m~~ 233 (352)
- +.-.++.+.|..++.++.+
T Consensus 445 ~~~r~~~~i~~d~~~a~~~l~~~~~ 469 (577)
T KOG1258|consen 445 KFARLRYKIREDADLARIILLEAND 469 (577)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 2 2334577777777777766
No 373
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=63.43 E-value=28 Score=23.06 Aligned_cols=36 Identities=14% Similarity=0.050 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHH
Q 042593 29 FLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTAL 65 (352)
Q Consensus 29 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l 65 (352)
+++..+.+..-.++|+++++.|.++| ..+...-+.|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~L 71 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKAL 71 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 45566667777788999999998888 5565554444
No 374
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=61.94 E-value=1.2e+02 Score=27.09 Aligned_cols=191 Identities=13% Similarity=0.045 Sum_probs=107.4
Q ss_pred HhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHH
Q 042593 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190 (352)
Q Consensus 111 ~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 190 (352)
...+|.+....++.+- +-...|+..+-..+.+.|+.+.|.+++++..-.--.. -...|..+.. -...|..
T Consensus 21 v~~~Dp~~l~~ll~~~------PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~-~~~~F~~~~~-~~~~g~~-- 90 (360)
T PF04910_consen 21 VQSHDPNALINLLQKN------PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERA-FHPSFSPFRS-NLTSGNC-- 90 (360)
T ss_pred HHccCHHHHHHHHHHC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-HHHHhhhhhc-ccccCcc--
Confidence 3444666555554333 3345577777888888888888887777654221000 0001100000 0001100
Q ss_pred HHHHHHHhccC-CCCHhhHHHH---HHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChh
Q 042593 191 ASKLFEDTSVD-RKNLVSWTTI---ISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIK 266 (352)
Q Consensus 191 a~~~~~~~~~~-~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 266 (352)
++.-. .-|...|-++ |..+.+.|.+..|.++.+-+..... .-|+.
T Consensus 91 ------rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp-------------------------~~DP~ 139 (360)
T PF04910_consen 91 ------RLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDP-------------------------DEDPL 139 (360)
T ss_pred ------ccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-------------------------CCCcc
Confidence 00000 2244445444 5678888999999998888887422 12455
Q ss_pred hHHHHHHHHH-HcCChhHHHHHHhcCCCC-CC------CchhhHHHHHHHHhcccc---------------cCccccccc
Q 042593 267 HYGCLIDILE-RAGRLEQAEEVASGIPSQ-IT------NVVVWRTGFLRLLINSYF---------------FSPITLNSQ 323 (352)
Q Consensus 267 ~~~~li~~~~-~~g~~~~A~~~~~~m~~~-~~------~~~~~~~li~~~~~~g~~---------------~~a~~~~~~ 323 (352)
....+|+.|+ ++++++--.++.+..... .. -...|+.-+ ++...++. ++|.....+
T Consensus 140 g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aL-A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~ 218 (360)
T PF04910_consen 140 GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIAL-AYFRLEKEESSQSSAQSGRSENSESADEALQK 218 (360)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHH-HHHHhcCccccccccccccccchhHHHHHHHH
Confidence 5555677775 667776666666654431 01 123444433 34445554 789999999
Q ss_pred chhhhhhHHHHhhhhhcccc
Q 042593 324 RLFFFPAALYALTQILGFKP 343 (352)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~ 343 (352)
++..||..+..+-+.+|..+
T Consensus 219 Ai~~fP~vl~~Ll~~l~~~~ 238 (360)
T PF04910_consen 219 AILRFPWVLVPLLDKLGISP 238 (360)
T ss_pred HHHHhHHHHHHHHHHhcccc
Confidence 99999999988888774433
No 375
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=61.67 E-value=26 Score=25.67 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=38.7
Q ss_pred CCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHH
Q 042593 260 EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFL 306 (352)
Q Consensus 260 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~ 306 (352)
.+.|++.....-++++.+..|+..|.++|+-++.+ .+.-..|-.++.
T Consensus 79 DlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 79 DLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYVK 126 (149)
T ss_pred ccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 88899999999999999999999999999999877 443334555544
No 376
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=60.82 E-value=18 Score=28.99 Aligned_cols=97 Identities=14% Similarity=-0.039 Sum_probs=50.9
Q ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 215 FAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 215 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
+.++|++++|..-|.+.++. .|...+ .--...|..-..++.+.+.++.|..-.......
T Consensus 105 ~F~ngdyeeA~skY~~Ale~--cp~~~~-------------------e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel 163 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALES--CPSTST-------------------EERSILYSNRAAALIKLRKWESAIEDCSKAIEL 163 (271)
T ss_pred hhhcccHHHHHHHHHHHHHh--CccccH-------------------HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc
Confidence 56788999999988888763 221111 001223444445556666666666555555444
Q ss_pred -CCCchhhHHHHHHHHhcccccCcccccccchhhhhhHH
Q 042593 295 -ITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAAL 332 (352)
Q Consensus 295 -~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 332 (352)
+........-..+|-+...+++|++-+++.+..-|..-
T Consensus 164 ~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 164 NPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 11222222223345555666666666655555444443
No 377
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=60.49 E-value=1.3e+02 Score=26.92 Aligned_cols=56 Identities=5% Similarity=-0.127 Sum_probs=45.2
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHH-hcCChhHHHHHhccCC
Q 042593 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV-SLGFLKDSSKLFDELP 86 (352)
Q Consensus 31 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~ 86 (352)
+..+.+.|.+..|+++-+.+......-|+...-..|+.|+ +.++++--+++.+...
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 5677899999999999999999885558887778888887 5677877788777654
No 378
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=60.26 E-value=65 Score=23.59 Aligned_cols=44 Identities=20% Similarity=0.304 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhc
Q 042593 223 EAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290 (352)
Q Consensus 223 ~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 290 (352)
.+.++|+.|...|+-. -....|......+.+.|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~------------------------~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGT------------------------KLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTST------------------------TBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccH------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7777888777765432 1456777788888888999999888763
No 379
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=60.22 E-value=60 Score=28.45 Aligned_cols=86 Identities=13% Similarity=0.061 Sum_probs=54.9
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhccCCCC-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhh
Q 042593 107 IDGYSRMNRSNEALALFRRMAACEYTEP-SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC 185 (352)
Q Consensus 107 i~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 185 (352)
.+.|.+.|.+++|++.|..-.. +.| |.+++..-..+|.+.+.+..|+.=-......+ ...+.+|++.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd---------~~Y~KAYSRR 171 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD---------KLYVKAYSRR 171 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh---------HHHHHHHHHH
Confidence 3568889999999999988623 345 78888888899999888876665444433321 2345566655
Q ss_pred CC-------hHHHHHHHHHhccCCCC
Q 042593 186 GC-------IFSASKLFEDTSVDRKN 204 (352)
Q Consensus 186 g~-------~~~a~~~~~~~~~~~~~ 204 (352)
+. ..+|.+=.+......|+
T Consensus 172 ~~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 172 MQARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 54 44444444444333555
No 380
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=59.91 E-value=1.6e+02 Score=27.92 Aligned_cols=171 Identities=9% Similarity=-0.107 Sum_probs=102.0
Q ss_pred hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC----CCCHhhHHHH
Q 042593 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD----RKNLVSWTTI 211 (352)
Q Consensus 136 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~l 211 (352)
..+|..-+.--.+.|+.+.+.-.++...-. +.. -...|-..+......|+.+-|..++..-.+. .|......+.
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~-Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CAL-YDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-Hhh-hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 457888888888899999888888876532 111 3445555555556668888888877764333 3455555544
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh------------hHhHHHHHHHHHHh-cCCCCChhhHHHHHHH----
Q 042593 212 ISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI------------GEEGLKFFDKMVEE-CEVLPDIKHYGCLIDI---- 274 (352)
Q Consensus 212 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------~~~a~~~~~~m~~~-~~~~p~~~~~~~li~~---- 274 (352)
+. -..|++..|..+++.+.+.- |+..-.. .+.+.. ...+... ..-+-+..+.+.+.--
T Consensus 375 f~--e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 FE--ESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANY-KNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred HH--HhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 42 34568888988888887753 4432222 222221 1111111 0011122222222222
Q ss_pred -HHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhccc
Q 042593 275 -LERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSY 313 (352)
Q Consensus 275 -~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~ 313 (352)
+.-.++.+.|..++.++... +++...|..++.-...++.
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 23367888999999888887 7788888888887766653
No 381
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=59.34 E-value=87 Score=24.76 Aligned_cols=68 Identities=19% Similarity=0.185 Sum_probs=49.1
Q ss_pred hHhHHHHHHHHHHhcCCCCC--h-----hhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHHHhcccc
Q 042593 245 GEEGLKFFDKMVEECEVLPD--I-----KHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYF 314 (352)
Q Consensus 245 ~~~a~~~~~~m~~~~~~~p~--~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~ 314 (352)
++.|..+|+.+.+. .-.|. . ..-...+-.|.+.|.+++|.+++++.-.. |+.......+....+..+.
T Consensus 85 LESAl~v~~~I~~E-~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d-~~~~~~r~kL~~II~~Kd~ 159 (200)
T cd00280 85 LESALMVLESIEKE-FSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD-PESQKLRMKLLMIIREKDP 159 (200)
T ss_pred HHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-CCchhHHHHHHHHHHcccc
Confidence 88889999988886 33331 1 12234567899999999999999988775 6666667777777776664
No 382
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.93 E-value=2.1e+02 Score=28.97 Aligned_cols=202 Identities=11% Similarity=0.016 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCH--HHHHHHHHHhHhccCCCCChh
Q 042593 60 YVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRS--NEALALFRRMAACEYTEPSEI 137 (352)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~~p~~~ 137 (352)
.-|..|+..|...|+.++|++++.+....+..+-+....+ +..++.-+.+.+.. +-.++.-... .+....-...
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~---~e~ii~YL~~l~~~~~~Li~~y~~wv-l~~~p~~gi~ 580 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDG---LEKIIEYLKKLGAENLDLILEYADWV-LNKNPEAGIQ 580 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhh---HHHHHHHHHHhcccchhHHHHHhhhh-hccCchhhee
Confidence 3577888888888888888888888765221111111111 33344444444333 3333332222 1111000000
Q ss_pred hHH------------HHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCC--------hHHHHHH-HH
Q 042593 138 TIL------------AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC--------IFSASKL-FE 196 (352)
Q Consensus 138 t~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--------~~~a~~~-~~ 196 (352)
.+. ..+-.+......+.+..+++.+....-.+ +....+.++..|++.=+ -+++.+. ++
T Consensus 581 Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~-~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~r 659 (877)
T KOG2063|consen 581 IFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLT-STLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVR 659 (877)
T ss_pred eeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcccc-chHHHHHHHHHHHHHHhhccCchhccccchhhhHH
Confidence 111 11223445566777778888887666555 67777788888875422 2233333 11
Q ss_pred H----hccC----CCC--------HhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcC
Q 042593 197 D----TSVD----RKN--------LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECE 260 (352)
Q Consensus 197 ~----~~~~----~~~--------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~ 260 (352)
+ +... .|. ...|.-..-.+.+.|+.++|..++-..... ++.|..+....-+ .
T Consensus 660 ekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d----------~~~A~~Yc~~~y~--~ 727 (877)
T KOG2063|consen 660 EKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDD----------IDAAESYCLPQYE--S 727 (877)
T ss_pred HHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcc----------hhHHHHHHHHhcc--C
Confidence 1 1110 221 122222222244889999999988776653 2223333332222 2
Q ss_pred CCCChhhHHHHHHHHHHc
Q 042593 261 VLPDIKHYGCLIDILERA 278 (352)
Q Consensus 261 ~~p~~~~~~~li~~~~~~ 278 (352)
..++...|..++..|...
T Consensus 728 ~~~~~~~y~~lL~~~l~~ 745 (877)
T KOG2063|consen 728 DKTNKEIYLTLLRIYLNP 745 (877)
T ss_pred CCcccHHHHHHHHHHhcc
Confidence 334556666666666554
No 383
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.21 E-value=1.7e+02 Score=27.83 Aligned_cols=81 Identities=21% Similarity=0.022 Sum_probs=52.4
Q ss_pred ChhhHHHHHHHHH-HcCChhHHHHHHhcCCCC-----CCCchhhHHHHHHHHhccc---ccCcccccccchhhhhhHHHH
Q 042593 264 DIKHYGCLIDILE-RAGRLEQAEEVASGIPSQ-----ITNVVVWRTGFLRLLINSY---FFSPITLNSQRLFFFPAALYA 334 (352)
Q Consensus 264 ~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~-----~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~ 334 (352)
|+.....+|+.|+ ++.+++=..+++++.... -||..--..+...|+.... -+.|...+.+++.-+|.-+..
T Consensus 376 DPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~vl~e 455 (665)
T KOG2422|consen 376 DPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPLVLSE 455 (665)
T ss_pred CchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcHHHHH
Confidence 5666677788885 677777666766655322 3444333334455555444 357788888899999988887
Q ss_pred hhhhhccccc
Q 042593 335 LTQILGFKPL 344 (352)
Q Consensus 335 ~~~~~~~~~~ 344 (352)
+...+...|+
T Consensus 456 Lld~~~l~~d 465 (665)
T KOG2422|consen 456 LLDELLLGDD 465 (665)
T ss_pred HHHhccCCch
Confidence 7776666654
No 384
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=57.75 E-value=94 Score=24.61 Aligned_cols=47 Identities=17% Similarity=0.039 Sum_probs=33.2
Q ss_pred hHHHHHHHHHhccCCCCH----hhHH-----HHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 188 IFSASKLFEDTSVDRKNL----VSWT-----TIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 188 ~~~a~~~~~~~~~~~~~~----~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
++.|+.+|+.+.+..+-. ..-. ..+..|.+.|.+++|.+++++....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d 140 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD 140 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC
Confidence 567888888876653322 1112 2355699999999999999998874
No 385
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=56.56 E-value=1.3e+02 Score=26.80 Aligned_cols=138 Identities=9% Similarity=0.060 Sum_probs=83.8
Q ss_pred cccHHHHHHHHHhcCCcchHHHHHHHHHHhCC---CC--chhhHHHHHHHHHhcCChhHHHHHhccCCC----CCchhHH
Q 042593 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF---QS--HVYVNTALGDMYVSLGFLKDSSKLFDELPE----RNLVTWN 94 (352)
Q Consensus 24 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~ 94 (352)
....-++-.++.-.+.++.+++.|+...+.-. .| ....|-.|...|.+..|.++|.-+..+..+ -...-|+
T Consensus 122 gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~ 201 (518)
T KOG1941|consen 122 GQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWS 201 (518)
T ss_pred chhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchh
Confidence 34455677888888899999999988765322 12 346788999999999999988766554432 1111222
Q ss_pred HHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhh----HHHHHHHHHhCCChhhHHHHHHHH
Q 042593 95 VIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT----ILAVLPAIWKNGEVRNCQLIHGYG 162 (352)
Q Consensus 95 ~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~ 162 (352)
.--+..+ ...+.-++-..|.+..|.+.-++..+..-..-|..+ ...+...|...|+.+.|+.-|+..
T Consensus 202 ~kyr~~~-lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 202 LKYRAMS-LYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHH-HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 2211111 333445566667666666666554233222334444 445566677888888887777654
No 386
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=56.44 E-value=34 Score=32.18 Aligned_cols=150 Identities=11% Similarity=-0.019 Sum_probs=97.2
Q ss_pred CchhhHHHHHHHHHhcC--ChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC
Q 042593 57 SHVYVNTALGDMYVSLG--FLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134 (352)
Q Consensus 57 ~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p 134 (352)
|+..+..+++.-....- .-+-+-.+|..|.+|+...|-+ .|..---+-..|+...|.+.+....... ..-
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~~~p~w~~-------ln~aglywr~~gn~~~a~~cl~~a~~~~-p~~ 640 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINKPNAPIWLI-------LNEAGLYWRAVGNSTFAIACLQRALNLA-PLQ 640 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCCCCCeEEE-------eecccceeeecCCcHHHHHHHHHHhccC-hhh
Confidence 66666666655444332 2344667777888776655333 2222222344678888888887773322 222
Q ss_pred ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCC-CCHhhHHHHHH
Q 042593 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR-KNLVSWTTIIS 213 (352)
Q Consensus 135 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~li~ 213 (352)
..+....+.+.+.+.|..-.|..++.+...... . .+-++-.+.++|.-..+++.|++.|++..+.. .+...=+.|..
T Consensus 641 ~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~-s-epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 641 QDVPLVNLANLLIHYGLHLDATKLLLQALAINS-S-EPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred hcccHHHHHHHHHHhhhhccHHHHHHHHHhhcc-c-CchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 334566777778888888888888887776652 2 56677788999999999999999998866553 45555565554
Q ss_pred HHH
Q 042593 214 GFA 216 (352)
Q Consensus 214 ~~~ 216 (352)
.-|
T Consensus 719 i~c 721 (886)
T KOG4507|consen 719 IRC 721 (886)
T ss_pred HHH
Confidence 433
No 387
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=55.15 E-value=1.4e+02 Score=25.98 Aligned_cols=135 Identities=10% Similarity=-0.023 Sum_probs=78.8
Q ss_pred CcccHHHHHHHHHhcCC------------cchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCC--
Q 042593 23 DSFTYSFLIRTCVTLSY------------PNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPER-- 88 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~------------~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-- 88 (352)
|+.+|-.++..--..-. .+.-+.+++...+.. +-+....-.++..+.+..+.++..+.++++...
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~ 96 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP 96 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC
Confidence 56666666644333221 234567788877774 456677888899999999989988889988763
Q ss_pred -CchhHHHHHHHHHhHHHHHHHHHh---cCCHHHHHHHHHHhH------hccC-----CCCCh-----hhHHHHHHHHHh
Q 042593 89 -NLVTWNVIITGLVKWTGIIDGYSR---MNRSNEALALFRRMA------ACEY-----TEPSE-----ITILAVLPAIWK 148 (352)
Q Consensus 89 -~~~~~~~~i~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~------~~~~-----~~p~~-----~t~~~ll~~~~~ 148 (352)
+... |-..|+.... .-.++.+..+|.+-. .... ..++. ..+.-+...+..
T Consensus 97 ~~~~L----------W~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~ 166 (321)
T PF08424_consen 97 GSPEL----------WREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ 166 (321)
T ss_pred CChHH----------HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH
Confidence 3344 3333332222 223444444444431 1111 01111 123333344457
Q ss_pred CCChhhHHHHHHHHHhcCCC
Q 042593 149 NGEVRNCQLIHGYGEKRGFN 168 (352)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~ 168 (352)
.|..+.|..+++.+.+.++.
T Consensus 167 aG~~E~Ava~~Qa~lE~n~~ 186 (321)
T PF08424_consen 167 AGYTERAVALWQALLEFNFF 186 (321)
T ss_pred CCchHHHHHHHHHHHHHHcC
Confidence 78888888888888887763
No 388
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=54.24 E-value=40 Score=27.23 Aligned_cols=84 Identities=19% Similarity=0.161 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHhHhccCCC-------CChhhHHHHHHHHHhCC---------ChhhHHHHHHHHHhcCCCCCchhhHHHH
Q 042593 115 RSNEALALFRRMAACEYTE-------PSEITILAVLPAIWKNG---------EVRNCQLIHGYGEKRGFNAFDIHVSNCL 178 (352)
Q Consensus 115 ~~~~a~~~~~~m~~~~~~~-------p~~~t~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~~~~~l 178 (352)
..+.|..++.+| .-..++ -...-|..+..+|++.| +.+.-..+++...+.|+...=+++|.++
T Consensus 136 ~vetAiaml~dm-G~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssi 214 (236)
T TIGR03581 136 PIETAIAMLKDM-GGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSI 214 (236)
T ss_pred eHHHHHHHHHHc-CCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceec
Confidence 467899999998 443322 23446888999999887 3455667777777777664456777777
Q ss_pred HHHHHhhCChHHHHHHHHHhc
Q 042593 179 IDTYAKCGCIFSASKLFEDTS 199 (352)
Q Consensus 179 i~~~~~~g~~~~a~~~~~~~~ 199 (352)
|+--.-.-+.++..+++..++
T Consensus 215 IDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 215 IDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cccccCCCCHHHHHHHHHHhh
Confidence 765555556677777766553
No 389
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=53.96 E-value=2.4e+02 Score=28.26 Aligned_cols=189 Identities=11% Similarity=0.029 Sum_probs=97.2
Q ss_pred hcCCcchHHHHHHHHHHhCCCCchh-------hHHHHHHH-HHhcCChhHHHHHhccCCC--------CCchhHHHHHHH
Q 042593 36 TLSYPNLGTQLHAVFSKVGFQSHVY-------VNTALGDM-YVSLGFLKDSSKLFDELPE--------RNLVTWNVIITG 99 (352)
Q Consensus 36 ~~g~~~~a~~~~~~m~~~~~~~~~~-------~~~~li~~-~~~~g~~~~a~~~~~~m~~--------~~~~~~~~~i~~ 99 (352)
...++.+|..+++++...-..|+.. .+++|-.. ....|++++|+++-+...+ ..++.
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~------- 499 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVA------- 499 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhh-------
Confidence 4677888888888776543232221 33333222 2245778887777665443 22233
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhh---HHHHHH--HHHhCCCh--hhHHHHHHHHHhcCC-CC--
Q 042593 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT---ILAVLP--AIWKNGEV--RNCQLIHGYGEKRGF-NA-- 169 (352)
Q Consensus 100 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t---~~~ll~--~~~~~~~~--~~a~~~~~~~~~~~~-~~-- 169 (352)
+..+..+..-.|++++|..+..+..+ ..-.-+... +..+.. .+...|.. .+.+..+......-. ..
T Consensus 500 ---~sv~~~a~~~~G~~~~Al~~~~~a~~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~ 575 (894)
T COG2909 500 ---LSVLGEAAHIRGELTQALALMQQAEQ-MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPR 575 (894)
T ss_pred ---hhhhhHHHHHhchHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhccc
Confidence 66667777788888888888776622 212233332 222222 23445522 222333333322211 10
Q ss_pred --CchhhHHHHHHHHHhhCChHHHHHHHHH---hc-cCCCCH--h--hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Q 042593 170 --FDIHVSNCLIDTYAKCGCIFSASKLFED---TS-VDRKNL--V--SWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238 (352)
Q Consensus 170 --~~~~~~~~li~~~~~~g~~~~a~~~~~~---~~-~~~~~~--~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 238 (352)
.-..++..+..++.+ ++.+..-... .. ...|.. . .+..|+......|+.++|...++++......+
T Consensus 576 ~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 576 HEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred chhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 012334444555544 3332222221 11 112222 1 22367788899999999999999998865444
No 390
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=53.51 E-value=1e+02 Score=30.46 Aligned_cols=175 Identities=9% Similarity=-0.017 Sum_probs=91.0
Q ss_pred hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHH-----------hhCChHHHHHHHHHhccC---
Q 042593 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA-----------KCGCIFSASKLFEDTSVD--- 201 (352)
Q Consensus 136 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-----------~~g~~~~a~~~~~~~~~~--- 201 (352)
......++.++-..|+++.|..++..-....+. .......++.+.- ..|.+..|.++++-+...
T Consensus 432 ~~~~~~~l~~LL~~~~f~la~~~~~~~~~~~l~--~~~~~~lvl~~~~e~fd~Asn~n~~~g~lk~A~~~L~l~~~~~~~ 509 (715)
T PF08314_consen 432 DEIEEIFLEALLSSGRFSLAKSLYEESSSSPLS--SEKVEDLVLKAAWEFFDNASNGNRTRGGLKKARECLNLFPPTFPN 509 (715)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHTT---TT---HHHHHHHHHHHHHHHHH-SS--TTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhcCCcCCCC--HHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHhccCcCCc
Confidence 456778888899999999998888864332122 3444555554432 345677777777776543
Q ss_pred CCCHhhHHHHHHHHHcCCCHHH------------------HHHHHHHHHhcCCCCCcchhh-hHhHHHHHHHHHHhc---
Q 042593 202 RKNLVSWTTIISGFAMHGMGKE------------------AVENFERMQKVGLKPNRSWRI-GEEGLKFFDKMVEEC--- 259 (352)
Q Consensus 202 ~~~~~~~~~li~~~~~~~~~~~------------------a~~~~~~m~~~~~~p~~~~~~-~~~a~~~~~~m~~~~--- 259 (352)
.+...-...||.+.....++.- -+.+..+..+. +...|. .+...++...+...+
T Consensus 510 ~~~~~~~~~Li~a~~~Ls~f~l~l~~g~p~~P~~ir~~~dpl~LI~~vLe~----np~aY~~~~~ll~l~~~L~~~~~~~ 585 (715)
T PF08314_consen 510 SPRIQREKDLIKATHALSEFSLVLQPGVPFLPVQIRLHSDPLSLISKVLEQ----NPKAYKQLEKLLDLANNLVLAGSDE 585 (715)
T ss_dssp THHHHHHHHHHHHHHHHTTS-----------HHHHHTTT-THHHHHHHHHH----STTGGG-HHHHHHHHHHHHHH----
T ss_pred cHHHHHHHHHHHHHHHHHhCCeecCCCCCCCCceeeccCChHHHHHHHHHh----CchhhcCHHHHHHHHHHHHHHhccc
Confidence 2333444555655544443322 12222222222 111222 555555555555440
Q ss_pred -----CCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC---CCCch-hhHHHHHHHHhcccccC
Q 042593 260 -----EVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ---ITNVV-VWRTGFLRLLINSYFFS 316 (352)
Q Consensus 260 -----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~-~~~~li~~~~~~g~~~~ 316 (352)
...-...+....|++-...+|++-|.+...++... .++.. .+......+.+.|++..
T Consensus 586 ~~~~~~~~~~~ri~~~~i~~AL~~~Df~~Ay~~~~~ll~~~~~~~~~~~~~~~~W~~~~q~Gk~~~ 651 (715)
T PF08314_consen 586 SSESDDEAAERRILSMCIEAALVEDDFETAYSYCLELLDPPSDASSSSPNDDESWRTCYQVGKYRS 651 (715)
T ss_dssp -TT---SSTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---
T ss_pred ccccchHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcccccccCCCChHHHHHHHHhCCCC
Confidence 11112334455677778899999998887776543 11111 35555555667777665
No 391
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=53.29 E-value=52 Score=25.90 Aligned_cols=79 Identities=9% Similarity=0.132 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHh----ccCCCCChh-hHHHHHHHHHhCC----C-------hhhHHHHHHHHHhcC
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAA----CEYTEPSEI-TILAVLPAIWKNG----E-------VRNCQLIHGYGEKRG 166 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~p~~~-t~~~ll~~~~~~~----~-------~~~a~~~~~~~~~~~ 166 (352)
|...+.-+++..+..++.+++++... .-.+.|+.. ++..+.+++...+ + +++|...|+.....
T Consensus 31 WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~- 109 (186)
T PF06552_consen 31 WGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE- 109 (186)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc-
Confidence 66666666666655555555554311 122567764 7777777776543 3 34444555544444
Q ss_pred CCCCchhhHHHHHHHHHh
Q 042593 167 FNAFDIHVSNCLIDTYAK 184 (352)
Q Consensus 167 ~~~~~~~~~~~li~~~~~ 184 (352)
.| +..+|+.-+....+
T Consensus 110 -~P-~ne~Y~ksLe~~~k 125 (186)
T PF06552_consen 110 -DP-NNELYRKSLEMAAK 125 (186)
T ss_dssp --T-T-HHHHHHHHHHHT
T ss_pred -CC-CcHHHHHHHHHHHh
Confidence 56 78888888777643
No 392
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=53.27 E-value=72 Score=29.04 Aligned_cols=60 Identities=13% Similarity=0.059 Sum_probs=26.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhc
Q 042593 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR 165 (352)
Q Consensus 104 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 165 (352)
..|+.-|...|+..+|...++++ .-. .-.....+-+++.+.-+.|+-.....++++.-+.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeL-gmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s 572 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKEL-GMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS 572 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHh-CCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 34445555555555555555554 100 0011234455555555555544444444444443
No 393
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=53.03 E-value=2.7e+02 Score=28.41 Aligned_cols=75 Identities=12% Similarity=0.027 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhccC--CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCCh
Q 042593 188 IFSASKLFEDTSVD--RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDI 265 (352)
Q Consensus 188 ~~~a~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~ 265 (352)
.+.-.+.|.++.+- ..|..++..-.......|++..|.+++.++.+.. +-.++.
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~------------------------~es~t~ 1267 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEEN------------------------GESATK 1267 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhc------------------------cccchh
Confidence 33344445444332 3455556555666667777777777777766532 455566
Q ss_pred hhHHHHHHHHHHcCChhHHHH
Q 042593 266 KHYGCLIDILERAGRLEQAEE 286 (352)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~ 286 (352)
..|..++..+...|--..|.-
T Consensus 1268 ~~~~~~~el~~~Lgw~H~~t~ 1288 (1304)
T KOG1114|consen 1268 DVAVLLAELLENLGWNHLATF 1288 (1304)
T ss_pred HHHHHHHHHHHHhCchHhHHH
Confidence 666666776666665544433
No 394
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=52.71 E-value=55 Score=29.53 Aligned_cols=108 Identities=12% Similarity=0.120 Sum_probs=65.0
Q ss_pred CCCCCcccHHHHHHHHHhcCCcchHHHHHHHHH-------HhCCCC-----chhhHHHHHHHHHhcCChhHHHHHhccCC
Q 042593 19 PPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFS-------KVGFQS-----HVYVNTALGDMYVSLGFLKDSSKLFDELP 86 (352)
Q Consensus 19 P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~-------~~~~~~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 86 (352)
|.-.+....-.++.++....++.+.++..+... +.|-.| .-.+...|++.+|-.||+..|+++++.+.
T Consensus 70 ~~~W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~id 149 (404)
T PF10255_consen 70 PDVWNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENID 149 (404)
T ss_pred cCcccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccC
Confidence 533444455555566666666555444433311 111111 11355788899999999999999999875
Q ss_pred CCCchhHHHHHHHHH-hHHHHHHHHHhcCCHHHHHHHHHHh
Q 042593 87 ERNLVTWNVIITGLV-KWTGIIDGYSRMNRSNEALALFRRM 126 (352)
Q Consensus 87 ~~~~~~~~~~i~~~~-~~~~li~~~~~~~~~~~a~~~~~~m 126 (352)
-.....|+.+..+.+ +|.-+.-+|.-.+++.+|.+.|...
T Consensus 150 l~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 150 LNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred cccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211112222222222 2777888888999999999999886
No 395
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=52.51 E-value=1.5e+02 Score=25.47 Aligned_cols=200 Identities=11% Similarity=-0.011 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhHhccCCCCChhhHHHHHHHHHh------CC-----ChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHh
Q 042593 116 SNEALALFRRMAACEYTEPSEITILAVLPAIWK------NG-----EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK 184 (352)
Q Consensus 116 ~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~------~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 184 (352)
.++..+..++. ..........++.+.+.++.. .| ...+|.++|..+.++.-.+ .+-+.++.++-.
T Consensus 103 ~ekLnraIdr~-~k~ve~~~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hkgk~---v~~~~~ie~lwp 178 (361)
T COG3947 103 PEKLNRAIDRR-LKRVELTAEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHKGKE---VTSWEAIEALWP 178 (361)
T ss_pred HHHHHHHHHHH-hccccccchhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhcCCc---ccHhHHHHHHcc
Confidence 34444444444 222222234466666666652 11 1356788888887765332 233456666666
Q ss_pred hCChHHHHHHHHH-------hcc---------------------CCCCHhhHHHHHHHHHcC-CCHHHHHHHHHHHHhcC
Q 042593 185 CGCIFSASKLFED-------TSV---------------------DRKNLVSWTTIISGFAMH-GMGKEAVENFERMQKVG 235 (352)
Q Consensus 185 ~g~~~~a~~~~~~-------~~~---------------------~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~ 235 (352)
..+..+|...+.. +.. ..-|+.-|-..+...-.. ..++++.++....+. +
T Consensus 179 e~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv~e~es~~rqi~~inltide~kelv~~ykg-d 257 (361)
T COG3947 179 EKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDVQEYESLARQIEAINLTIDELKELVGQYKG-D 257 (361)
T ss_pred ccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccHHHHHHHhhhhhccccCHHHHHHHHHHhcC-C
Confidence 6666666555543 111 023556666666544322 345666665555433 2
Q ss_pred CCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccc
Q 042593 236 LKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYF 314 (352)
Q Consensus 236 ~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~ 314 (352)
.-|+......+.-.+.++.+-. .+++.....|..+|.+.+|.++.++.... +.+...|..|+..+...|+-
T Consensus 258 yl~e~~y~Waedererle~ly~--------kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~ 329 (361)
T COG3947 258 YLPEADYPWAEDERERLEQLYM--------KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDE 329 (361)
T ss_pred cCCccccccccchHHHHHHHHH--------HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccc
Confidence 3333332222222233333222 25566778899999999999999999887 77888999999999999998
Q ss_pred cCcccccccchhhh
Q 042593 315 FSPITLNSQRLFFF 328 (352)
Q Consensus 315 ~~a~~~~~~~~~~~ 328 (352)
-+|.+-..+.-...
T Consensus 330 is~~khyerya~vl 343 (361)
T COG3947 330 ISAIKHYERYAEVL 343 (361)
T ss_pred hhhhhHHHHHHHHH
Confidence 88877666654333
No 396
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.48 E-value=2.1e+02 Score=28.89 Aligned_cols=114 Identities=16% Similarity=0.103 Sum_probs=68.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHhccC--CCCC-hhhHHHHHHHHHhCCCh--hhHHHHHHHHHhcCCCCCchhhHH
Q 042593 102 KWTGIIDGYSRMNRSNEALALFRRMAACEY--TEPS-EITILAVLPAIWKNGEV--RNCQLIHGYGEKRGFNAFDIHVSN 176 (352)
Q Consensus 102 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~p~-~~t~~~ll~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ 176 (352)
.|..|+.-|...|+.++|+++|.+. .... ..+. ..-+-.++.-+.+.+.- +.+.++-+...+..... ...++.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l-~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~-gi~Ift 583 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDL-VDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEA-GIQIFT 583 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHH-hccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchh-heeeee
Confidence 3999999999999999999999999 4321 1111 11244466666666655 55555555554443332 222222
Q ss_pred H------------HHHHHHhhCChHHHHHHHHHhccC--CCCHhhHHHHHHHHHc
Q 042593 177 C------------LIDTYAKCGCIFSASKLFEDTSVD--RKNLVSWTTIISGFAM 217 (352)
Q Consensus 177 ~------------li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~li~~~~~ 217 (352)
. .+-.|.+....+.+...++.+... .++....+.++..|+.
T Consensus 584 ~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 584 SEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 2 233455566667777777776544 3456666777766654
No 397
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=51.52 E-value=67 Score=28.16 Aligned_cols=51 Identities=6% Similarity=-0.096 Sum_probs=33.7
Q ss_pred HHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhcc
Q 042593 33 TCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE 84 (352)
Q Consensus 33 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 84 (352)
-|.+.|.+++|.+.|....... +.|+.++..-..+|.+..++..|+.=.+.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~ 156 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEA 156 (536)
T ss_pred hhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHH
Confidence 3456777888888777665543 33777777777777777777666544333
No 398
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=51.49 E-value=61 Score=21.79 Aligned_cols=63 Identities=10% Similarity=0.088 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHH
Q 042593 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEA 119 (352)
Q Consensus 43 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a 119 (352)
+..+++.+.+.|+- +.... -..-+...+.+.|.++++.++.++..+ |....+++-..|...-|
T Consensus 18 ~~~v~~~L~~~~Vl-t~~~~---e~I~~~~tr~~q~~~LLd~L~~RG~~A----------F~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVF-TPDMI---EEIQAAGSRRDQARQLLIDLETRGKQA----------FPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCC-CHHHH---HHHHcCCCHHHHHHHHHHHHHhcCHHH----------HHHHHHHHHhcCchHHH
Confidence 45678888888842 33322 222345567889999999999988888 66666666666654433
No 399
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.15 E-value=77 Score=26.40 Aligned_cols=60 Identities=13% Similarity=0.018 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHhhCChHHHHHHHHHhccC-------CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042593 173 HVSNCLIDTYAKCGCIFSASKLFEDTSVD-------RKNLVSWTTIISGFAMHGMGKEAVENFERMQ 232 (352)
Q Consensus 173 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 232 (352)
...-.+..-|.+.|++++|.++|+.+... .+...+...+..++.+.|+.+....+-=+|.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34446777888999999999999987432 2344556677788888888888877765554
No 400
>PF06753 Bradykinin: Bradykinin; InterPro: IPR009608 This family consists of several bradykinin sequences. The skins of anuran amphibians, in addition to mucus glands, contain highly specialised poison glands, which, in reaction to stress or attack, exude a complex noxious cocktail of biologically active molecules. These secretions often contain a plethora of peptides among which bradykinin or structural variants have been identified [].; GO: 0005179 hormone activity, 0006950 response to stress, 0005576 extracellular region
Probab=50.80 E-value=9 Score=16.90 Aligned_cols=13 Identities=38% Similarity=0.557 Sum_probs=9.9
Q ss_pred cccccccccCCCC
Q 042593 340 GFKPLFRKESSDG 352 (352)
Q Consensus 340 ~~~~~~~~~~~~~ 352 (352)
||+|+..+|-+++
T Consensus 7 gftpfrgkfhsqs 19 (19)
T PF06753_consen 7 GFTPFRGKFHSQS 19 (19)
T ss_pred CCCcccccccccC
Confidence 7888888887653
No 401
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=50.58 E-value=1.2e+02 Score=28.56 Aligned_cols=60 Identities=13% Similarity=0.126 Sum_probs=37.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh--hhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE--ITILAVLPAIWKNGEVRNCQLIHGYGEK 164 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 164 (352)
...++.-|.+.+++++|..++..| .-.. .+.. ...+.+.+.+.+..--++.+..++.+..
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~sm-nW~~-~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSM-NWNT-MGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-Cccc-cHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 556788899999999999999999 3221 1221 2345555555555444455555554443
No 402
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=50.47 E-value=2.3e+02 Score=27.04 Aligned_cols=231 Identities=9% Similarity=-0.025 Sum_probs=116.6
Q ss_pred CchhhHHHHHHHHHhcCChhHHHHHhccCCCCC-chhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC
Q 042593 57 SHVYVNTALGDMYVSLGFLKDSSKLFDELPERN-LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS 135 (352)
Q Consensus 57 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 135 (352)
+....+..|+..+. .-+.++-.++++++.. . ... |..++++....|-......+.+.+ +...+.+
T Consensus 308 ~~~~~f~~lv~~lR-~~~~e~l~~l~~~~~~-~~~~~----------r~~~~Dal~~~GT~~a~~~i~~~i-~~~~~~~- 373 (574)
T smart00638 308 PAAAKFLRLVRLLR-TLSEEQLEQLWRQLYE-KKKKA----------RRIFLDAVAQAGTPPALKFIKQWI-KNKKITP- 373 (574)
T ss_pred chHHHHHHHHHHHH-hCCHHHHHHHHHHHHh-CCHHH----------HHHHHHHHHhcCCHHHHHHHHHHH-HcCCCCH-
Confidence 45667888887764 4566777777777654 2 233 888999999999887777777777 6655543
Q ss_pred hhhHHHHHHH--HHhCCChhhHHHHHHHHHhcCCCCCch-------hhHHHHHHHHHhhCCh------HHHHHHHHHhcc
Q 042593 136 EITILAVLPA--IWKNGEVRNCQLIHGYGEKRGFNAFDI-------HVSNCLIDTYAKCGCI------FSASKLFEDTSV 200 (352)
Q Consensus 136 ~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~------~~a~~~~~~~~~ 200 (352)
...-..+..+ ..+.-..+-...+++.+....... .. -.+.++++-+|..... ++..+.+.+...
T Consensus 374 ~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~-~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~ 452 (574)
T smart00638 374 LEAAQLLAVLPHTARYPTEEILKALFELAESPEVQK-QPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQ 452 (574)
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccc-cHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHH
Confidence 2222223332 223334344444444333333443 43 3444555545544431 233333332111
Q ss_pred C---CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHH
Q 042593 201 D---RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILER 277 (352)
Q Consensus 201 ~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 277 (352)
. ..|..--...|.+++..|..... ..+..... |- .+...+.--.|...++++... ....+...++..|..
T Consensus 453 ~~~~~~~~~~~~~~LkaLGN~g~~~~i-~~l~~~l~-~~-~~~~~~iR~~Av~Alr~~a~~----~p~~v~~~l~~i~~n 525 (574)
T smart00638 453 QAVSKGDEEEIQLYLKALGNAGHPSSI-KVLEPYLE-GA-EPLSTFIRLAAILALRNLAKR----DPRKVQEVLLPIYLN 525 (574)
T ss_pred HHHhcCCchheeeHHHhhhccCChhHH-HHHHHhcC-CC-CCCCHHHHHHHHHHHHHHHHh----CchHHHHHHHHHHcC
Confidence 1 22333335567777777775444 33333333 21 122222334444455544432 133455566777766
Q ss_pred cCChhHHH--HHHhcCCCCCCCchhhHHHHHHHHh
Q 042593 278 AGRLEQAE--EVASGIPSQITNVVVWRTGFLRLLI 310 (352)
Q Consensus 278 ~g~~~~A~--~~~~~m~~~~~~~~~~~~li~~~~~ 310 (352)
.+...+.. .++--|.. .|+...+..+......
T Consensus 526 ~~e~~EvRiaA~~~lm~t-~P~~~~l~~ia~~l~~ 559 (574)
T smart00638 526 RAEPPEVRMAAVLVLMET-KPSVALLQRIAELLNK 559 (574)
T ss_pred CCCChHHHHHHHHHHHhc-CCCHHHHHHHHHHHhh
Confidence 65554433 22233333 2666666666554443
No 403
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=49.84 E-value=1.1e+02 Score=23.07 Aligned_cols=57 Identities=5% Similarity=-0.112 Sum_probs=42.0
Q ss_pred CCCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCCh
Q 042593 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL 75 (352)
Q Consensus 15 ~g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 75 (352)
.|+++ +.. =..++..+.+.++.-.|.++++.+.+.+..-+..|-=.-++.+...|-+
T Consensus 15 ~glr~---T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 15 AGLRL---TPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred cCCCc---CHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 66666 443 5567888888888899999999999988666666644457788877754
No 404
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.09 E-value=2.5e+02 Score=26.86 Aligned_cols=180 Identities=13% Similarity=0.038 Sum_probs=104.7
Q ss_pred cchHHHHHHHHHHhCCCCchhhHHHHHH--H-HHhcCChhHHHHHhccCCC-------C-CchhHHHHHHHHHhHHHHHH
Q 042593 40 PNLGTQLHAVFSKVGFQSHVYVNTALGD--M-YVSLGFLKDSSKLFDELPE-------R-NLVTWNVIITGLVKWTGIID 108 (352)
Q Consensus 40 ~~~a~~~~~~m~~~~~~~~~~~~~~li~--~-~~~~g~~~~a~~~~~~m~~-------~-~~~~~~~~i~~~~~~~~li~ 108 (352)
...+.+.++...+.|.. .....-.++. + ++...+++.|...|+...+ . .... .+.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a----------~~~lg~ 296 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPA----------QYGLGR 296 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCcc----------ccHHHH
Confidence 45678888888877732 2222222222 2 4456788999999887733 1 2222 455556
Q ss_pred HHHhcC-----CHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHh-CCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 109 GYSRMN-----RSNEALALFRRMAACEYTEPSEITILAVLPAIWK-NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 109 ~~~~~~-----~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
+|.+.. +.+.|+.++.+. ...| .|+.......+.-... ..+...|..+|...-+.|..+ ...+-+++...
T Consensus 297 ~Y~~g~~~~~~d~~~A~~~~~~a-A~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~--A~~~la~~y~~ 372 (552)
T KOG1550|consen 297 LYLQGLGVEKIDYEKALKLYTKA-AELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL--AIYRLALCYEL 372 (552)
T ss_pred HHhcCCCCccccHHHHHHHHHHH-HhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH--HHHHHHHHHHh
Confidence 666543 677899999998 6555 3665554444444433 356789999999999888652 33332332222
Q ss_pred H--hhCChHHHHHHHHHhccCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 042593 183 A--KCGCIFSASKLFEDTSVDR-KNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235 (352)
Q Consensus 183 ~--~~g~~~~a~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 235 (352)
+ ...+.+.|...+...-... |-..--...+..+.. ++.+.+.-.+..+.+.|
T Consensus 373 G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 373 GLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 2 3347788888888764443 221111222333333 66777766666666554
No 405
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=48.82 E-value=2.8e+02 Score=27.45 Aligned_cols=193 Identities=15% Similarity=0.131 Sum_probs=107.9
Q ss_pred hhHHHHHHhhccCCCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCC------CCch-hhHHHHHHHHHhcCCh
Q 042593 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGF------QSHV-YVNTALGDMYVSLGFL 75 (352)
Q Consensus 3 ~~~~M~~~~~~~~g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~------~~~~-~~~~~li~~~~~~g~~ 75 (352)
.+++|+. +--.|.-+...+...++-.|....+++...++.+.+++..- .++. ..|...++-=.+-|+-
T Consensus 185 ~L~~mR~-----RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 185 YLDKMRT-----RLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHh-----hcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccH
Confidence 4677887 55556445566677777788888888889999988876420 1111 2243344433455777
Q ss_pred hHHHHHhccCCC------CCchhHHHHHHHHHhHHH--HHHHHHhcCCHHHHHHHHHHhHhccCCCCChh---hHHHHHH
Q 042593 76 KDSSKLFDELPE------RNLVTWNVIITGLVKWTG--IIDGYSRMNRSNEALALFRRMAACEYTEPSEI---TILAVLP 144 (352)
Q Consensus 76 ~~a~~~~~~m~~------~~~~~~~~~i~~~~~~~~--li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~---t~~~ll~ 144 (352)
++|+...-.+.+ ||..+...-| |-- +-+.|...+..+.|...|.+.-. ++|+.+ -+..++.
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRI-----YKDmF~~S~ytDa~s~~~a~~WyrkaFe---veP~~~sGIN~atLL~ 331 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRI-----YKDMFIASNYTDAESLNHAIEWYRKAFE---VEPLEYSGINLATLLR 331 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechh-----hhhhhhccCCcchhhHHHHHHHHHHHhc---cCchhhccccHHHHHH
Confidence 788777666543 5543311111 221 22345556667777777777622 455554 3445554
Q ss_pred HHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHH
Q 042593 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEA 224 (352)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 224 (352)
+..+. ++... ++...|+ .|-..+++.|.++...+.|+-. + .+.+-.-.+++.+|
T Consensus 332 aaG~~--Fens~----Elq~Igm---------kLn~LlgrKG~leklq~YWdV~--------~---y~~asVLAnd~~ka 385 (1226)
T KOG4279|consen 332 AAGEH--FENSL----ELQQIGM---------KLNSLLGRKGALEKLQEYWDVA--------T---YFEASVLANDYQKA 385 (1226)
T ss_pred Hhhhh--ccchH----HHHHHHH---------HHHHHhhccchHHHHHHHHhHH--------H---hhhhhhhccCHHHH
Confidence 44332 22222 2222222 2334456778777777766532 2 23344456678888
Q ss_pred HHHHHHHHhc
Q 042593 225 VENFERMQKV 234 (352)
Q Consensus 225 ~~~~~~m~~~ 234 (352)
.+.-+.|.+.
T Consensus 386 iqAae~mfKL 395 (1226)
T KOG4279|consen 386 IQAAEMMFKL 395 (1226)
T ss_pred HHHHHHHhcc
Confidence 8877777764
No 406
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=48.69 E-value=41 Score=23.82 Aligned_cols=63 Identities=11% Similarity=0.056 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhC--CChhhHHHHHHHHHhcCCC
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN--GEVRNCQLIHGYGEKRGFN 168 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~ 168 (352)
-..++..|...++.++|...+.++ .... -.......++..+... ...+.+-.++..+.+.+..
T Consensus 5 i~~~l~ey~~~~d~~ea~~~l~el-~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 5 IFSILMEYFSSGDVDEAVECLKEL-KLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHT-T-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHh-CCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 345667788889999999999998 3221 1112233333333333 2233355566666665544
No 407
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=47.94 E-value=3.1e+02 Score=27.63 Aligned_cols=199 Identities=13% Similarity=0.026 Sum_probs=107.1
Q ss_pred HHHhcCChhHHHHHhccCC----CCCchhHHHHHHHHHhHHHHHH-HHHhcCCHHHHHHHHHHhHhcc---CCCCChhhH
Q 042593 68 MYVSLGFLKDSSKLFDELP----ERNLVTWNVIITGLVKWTGIID-GYSRMNRSNEALALFRRMAACE---YTEPSEITI 139 (352)
Q Consensus 68 ~~~~~g~~~~a~~~~~~m~----~~~~~~~~~~i~~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~---~~~p~~~t~ 139 (352)
......++++|..++++.. .|+...-..+... |+.+-. .....|++++|.++-+.....- -..+....+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae---~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAE---FQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 3445678888888887654 3433322222222 444443 3345788999998877763321 123445567
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhH---HHH--HHHHHhhCC--hHHHHHHHHHhccC--------CCC
Q 042593 140 LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS---NCL--IDTYAKCGC--IFSASKLFEDTSVD--------RKN 204 (352)
Q Consensus 140 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l--i~~~~~~g~--~~~a~~~~~~~~~~--------~~~ 204 (352)
..+..+..-.|++++|..+.++..+..-.. +...+ ..+ ...+...|+ .+..+..|...... .+-
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~-~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~ 579 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQMARQH-DVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFL 579 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhH
Confidence 777888888899999999888877663333 33333 222 222445663 22333333332211 122
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHHcCChh
Q 042593 205 LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDI--KHYGCLIDILERAGRLE 282 (352)
Q Consensus 205 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~~ 282 (352)
..++..+..++.+ ++.+..-...-.+.|..- ...|-. ..+..|++.....|+.+
T Consensus 580 ~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~---------------------~~~~~~~~~~~~~LA~l~~~~Gdl~ 635 (894)
T COG2909 580 VRIRAQLLRAWLR---LDLAEAEARLGIEVGSVY---------------------TPQPLLSRLALSMLAELEFLRGDLD 635 (894)
T ss_pred HHHHHHHHHHHHH---HhhhhHHhhhcchhhhhc---------------------ccchhHHHHHHHHHHHHHHhcCCHH
Confidence 3444444544444 344333333222221100 111111 12236788888999999
Q ss_pred HHHHHHhcCCCC
Q 042593 283 QAEEVASGIPSQ 294 (352)
Q Consensus 283 ~A~~~~~~m~~~ 294 (352)
+|...+.++...
T Consensus 636 ~A~~~l~~~~~l 647 (894)
T COG2909 636 KALAQLDELERL 647 (894)
T ss_pred HHHHHHHHHHHH
Confidence 999888777554
No 408
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=47.89 E-value=2.7e+02 Score=26.96 Aligned_cols=173 Identities=12% Similarity=0.082 Sum_probs=101.2
Q ss_pred CCCCCcccHHHHHHHHH-hcCCcchHHHHHHHHHHhCCCCchh-----hHHHHHHHHHhcCChhHHHHHhccCCC----C
Q 042593 19 PPLFDSFTYSFLIRTCV-TLSYPNLGTQLHAVFSKVGFQSHVY-----VNTALGDMYVSLGFLKDSSKLFDELPE----R 88 (352)
Q Consensus 19 P~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~m~~~~~~~~~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~----~ 88 (352)
||..+..++-.+...+. ...+++.|...+++....--+++.. .-..++..+.+.+... |....++..+ .
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY 132 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence 33445667777777777 6789999999998775443233222 2345667777666555 8777777543 1
Q ss_pred CchhHHHHHHHHHhHHHH-HHHHHhcCCHHHHHHHHHHhHhccC--CCCChhhHHHHHHHHHh--CCChhhHHHHHHHHH
Q 042593 89 NLVTWNVIITGLVKWTGI-IDGYSRMNRSNEALALFRRMAACEY--TEPSEITILAVLPAIWK--NGEVRNCQLIHGYGE 163 (352)
Q Consensus 89 ~~~~~~~~i~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~--~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~ 163 (352)
....|.-. |..+ +..+...++...|.+.++.+..... ..|-..++..++.+... .+..+++.+..+++.
T Consensus 133 ~~~~w~~~------frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~ 206 (608)
T PF10345_consen 133 GHSAWYYA------FRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAI 206 (608)
T ss_pred CchhHHHH------HHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 22222222 3333 2222233899999999998844443 33445566666666553 454566666666663
Q ss_pred hcCC--------CCCchhhHHHHHHHHH--hhCChHHHHHHHHHh
Q 042593 164 KRGF--------NAFDIHVSNCLIDTYA--KCGCIFSASKLFEDT 198 (352)
Q Consensus 164 ~~~~--------~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~ 198 (352)
.... .++...+|..+++.++ ..|++..+.+.++++
T Consensus 207 ~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 207 AQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2211 2225667777777665 456666666665543
No 409
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.80 E-value=2.4e+02 Score=26.30 Aligned_cols=128 Identities=16% Similarity=-0.000 Sum_probs=79.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC--hh-----hHHHHHHH-HHhCCChhhHHHHHHHHHhcCCCCCchhh
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPS--EI-----TILAVLPA-IWKNGEVRNCQLIHGYGEKRGFNAFDIHV 174 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~-----t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 174 (352)
...++-+-.-.|+..+|++-..+|..-..-.|. .. ....++.- ++..+.++.|+.-|....+.--.. +...
T Consensus 326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-dl~a 404 (629)
T KOG2300|consen 326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-DLQA 404 (629)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-HHHH
Confidence 344445555679999999999999433333444 11 22233333 346688899988887766543322 3333
Q ss_pred H--HHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHH--------HHH--HHcCCCHHHHHHHHHHHHh
Q 042593 175 S--NCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTI--------ISG--FAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 175 ~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l--------i~~--~~~~~~~~~a~~~~~~m~~ 233 (352)
+ ..+.-.|.+.|+.++-.++++.+ .++|..++.+- +.+ ....+++.||...+.+-.+
T Consensus 405 ~~nlnlAi~YL~~~~~ed~y~~ld~i--~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lk 473 (629)
T KOG2300|consen 405 FCNLNLAISYLRIGDAEDLYKALDLI--GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLK 473 (629)
T ss_pred HHHHhHHHHHHHhccHHHHHHHHHhc--CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 2 34556788899999888888887 34444333221 111 2356789999988888665
No 410
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=47.43 E-value=1.9e+02 Score=25.09 Aligned_cols=82 Identities=10% Similarity=0.057 Sum_probs=60.8
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHH
Q 042593 44 TQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALF 123 (352)
Q Consensus 44 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~ 123 (352)
.++|+.|.+.++.|.-.++.-+.-.+...=.+.+.+.+++.+... ..-+..++..+++--.+++--.-.|++....+++
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLL 341 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-PQRFDFLLYICCSMLILVRERILEGDFTVNMKLL 341 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-hhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 478999999999999999988888888888999999999998752 2225555555544444455555568888777776
Q ss_pred HHh
Q 042593 124 RRM 126 (352)
Q Consensus 124 ~~m 126 (352)
+.-
T Consensus 342 Q~y 344 (370)
T KOG4567|consen 342 QNY 344 (370)
T ss_pred hcC
Confidence 554
No 411
>PRK09687 putative lyase; Provisional
Probab=46.74 E-value=1.8e+02 Score=24.77 Aligned_cols=160 Identities=10% Similarity=-0.025 Sum_probs=72.1
Q ss_pred CchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCH----HHHHHHHHHhHhccCC
Q 042593 57 SHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRS----NEALALFRRMAACEYT 132 (352)
Q Consensus 57 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~~~~ 132 (352)
+|.......+.++...|..+-...+..-+..+|... -...+.++++.|+. +++...+..+ -. -
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~v----------R~~A~~aLg~lg~~~~~~~~a~~~L~~l-~~--~ 101 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIE----------RDIGADILSQLGMAKRCQDNVFNILNNL-AL--E 101 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHH----------HHHHHHHHHhcCCCccchHHHHHHHHHH-Hh--c
Confidence 445555555666666555333333333233344433 33444555556552 3455555554 11 1
Q ss_pred CCChhhHHHHHHHHHhCCChhh--HHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHH
Q 042593 133 EPSEITILAVLPAIWKNGEVRN--CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210 (352)
Q Consensus 133 ~p~~~t~~~ll~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 210 (352)
.|+...-...+.++...+.-.. -.+..+.+...-..+ +..+-...+.++++.|+. .|...+-.+.. .+|...-..
T Consensus 102 D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~-~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~-d~~~~VR~~ 178 (280)
T PRK09687 102 DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDK-STNVRFAVAFALSVINDE-AAIPLLINLLK-DPNGDVRNW 178 (280)
T ss_pred CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCC-CHHHHHHHHHHHhccCCH-HHHHHHHHHhc-CCCHHHHHH
Confidence 3555555555555555432111 112222222222222 445555666677666653 34444444332 333344444
Q ss_pred HHHHHHcCC-CHHHHHHHHHHHH
Q 042593 211 IISGFAMHG-MGKEAVENFERMQ 232 (352)
Q Consensus 211 li~~~~~~~-~~~~a~~~~~~m~ 232 (352)
.+.++.+.+ +.+++...+..+.
T Consensus 179 A~~aLg~~~~~~~~~~~~L~~~L 201 (280)
T PRK09687 179 AAFALNSNKYDNPDIREAFVAML 201 (280)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHh
Confidence 445555442 2334555554444
No 412
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=46.41 E-value=85 Score=25.70 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=0.0
Q ss_pred HHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCC
Q 042593 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEV 261 (352)
Q Consensus 182 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~ 261 (352)
+.+.+......+--+++.+..++..-+|.|+--|.-+..+.+|...|.. +.|+.|+ .+
T Consensus 3 ~~~~~~~~~~~~w~~~~~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~--------------------~~ 60 (228)
T KOG2659|consen 3 QGRSSSFSTKEEWEEQLMKVSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPP--------------------SI 60 (228)
T ss_pred CCcCcccCchhhhHHHHhccCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCc--------------------cC
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC--CCCchhhHHHHHH----HHhcccccCcccccccch
Q 042593 262 LPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ--ITNVVVWRTGFLR----LLINSYFFSPITLNSQRL 325 (352)
Q Consensus 262 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~li~~----~~~~g~~~~a~~~~~~~~ 325 (352)
.++...=..-|......|++++|.+..+.+... ..|...+-.|..- +.+.|..++|+++....+
T Consensus 61 d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 61 DLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred chhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
No 413
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=46.38 E-value=31 Score=21.87 Aligned_cols=49 Identities=4% Similarity=-0.252 Sum_probs=39.9
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhc
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL 72 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 72 (352)
+...++.++...++..-.+.++..+..+...| .-+..+|-.-++.+++.
T Consensus 7 ~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 7 EDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 66789999999999999999999999999988 45677777777766653
No 414
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.03 E-value=3.3e+02 Score=27.43 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHHHhcccccCcccccccc
Q 042593 267 HYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQR 324 (352)
Q Consensus 267 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 324 (352)
........+...|+.+.+..+-.-|.. |..++.-+..+|++++|+++....
T Consensus 506 nretv~~l~~~~~~~e~ll~fA~l~~d-------~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 506 NRETVYQLLASHGRQEELLQFANLIKD-------YEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred hHHHHHHHHHHccCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455566677887777776666553 677788888888888888776554
No 415
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=45.63 E-value=79 Score=22.46 Aligned_cols=49 Identities=6% Similarity=0.040 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhH
Q 042593 29 FLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD 77 (352)
Q Consensus 29 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 77 (352)
.++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+.+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~ 53 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVRE 53 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 4666777777778899999999998866777776666888888886553
No 416
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=45.58 E-value=1.6e+02 Score=25.35 Aligned_cols=109 Identities=8% Similarity=0.129 Sum_probs=58.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhh
Q 042593 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC 185 (352)
Q Consensus 106 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 185 (352)
++....+..+..+.++.++.+ + ....-...++.+...|++.+|.+++.+..+.- . .-.-|+++=+.-
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i-~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~--~l~~~~c~~~L~--- 170 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQI-K------TVQQTQSRLQELLEEGDYPGALDLIEECQQLL-E--ELKGYSCVRHLS--- 170 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-H------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H--hcccchHHHHHh---
Confidence 344445555555555555555 2 22234455666778889988888888776531 1 111121211111
Q ss_pred CChHHHHHHHHHhccC-------CCCHhhHHHHHHHHHcCCCHHHHHHH
Q 042593 186 GCIFSASKLFEDTSVD-------RKNLVSWTTIISGFAMHGMGKEAVEN 227 (352)
Q Consensus 186 g~~~~a~~~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~ 227 (352)
.++++-....+++.+. .-|+..|..++.+|.-.|+...+.+-
T Consensus 171 ~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dk 219 (291)
T PF10475_consen 171 SQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDK 219 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHH
Confidence 1222322333222211 56888999999999888877665533
No 417
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=45.55 E-value=1.6e+02 Score=23.71 Aligned_cols=83 Identities=12% Similarity=0.083 Sum_probs=59.7
Q ss_pred HHHHHhhCChHHHHHHHHHhccC-C-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHH
Q 042593 179 IDTYAKCGCIFSASKLFEDTSVD-R-KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMV 256 (352)
Q Consensus 179 i~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~ 256 (352)
---..+.|+ +.|.+.|-.+... . -++..-..|...|. ..+.+++..++.+..+..- +
T Consensus 114 Yy~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~-~------------------ 172 (203)
T PF11207_consen 114 YYHWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSN-P------------------ 172 (203)
T ss_pred HHHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcC-C------------------
Confidence 334556666 6677777777554 2 34555555555555 6789999999999887521 1
Q ss_pred HhcCCCCChhhHHHHHHHHHHcCChhHHH
Q 042593 257 EECEVLPDIKHYGCLIDILERAGRLEQAE 285 (352)
Q Consensus 257 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 285 (352)
+-.+|+..+.+|+..+.+.|+.+.|.
T Consensus 173 ---~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 173 ---DDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred ---CCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 44689999999999999999999885
No 418
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=45.30 E-value=57 Score=21.20 Aligned_cols=63 Identities=14% Similarity=0.077 Sum_probs=44.4
Q ss_pred CChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCcccccccchhhhhhHHHHhhhhhcc
Q 042593 279 GRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAALYALTQILGF 341 (352)
Q Consensus 279 g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 341 (352)
=+.+.|..++..++.. +.++..||.+..-+.++...-..+..-...+-...+.+-.+...+|-
T Consensus 11 lDtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RHkF~iskl~pd~~~LG~L~~aL~ey~~~~g~ 74 (82)
T PF11123_consen 11 LDTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRHKFQISKLQPDENILGELAAALEEYKKMVGA 74 (82)
T ss_pred HHHHHHHHHHHHhcchhhcChHHHHHHHHHHHHccchhhhcCccHHHHHHHHHHHHHHHHHcCC
Confidence 3567788888888777 77888899988887777766666666666566666666666555543
No 419
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=44.81 E-value=1.3e+02 Score=22.61 Aligned_cols=58 Identities=10% Similarity=-0.003 Sum_probs=37.3
Q ss_pred hccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCC
Q 042593 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC 187 (352)
Q Consensus 128 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 187 (352)
+..|.+++.. -..++..+...++.-.|..+++++.+.+... +..|--.-++.+...|-
T Consensus 13 k~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~i-slaTVYr~L~~l~e~Gl 70 (145)
T COG0735 13 KEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGI-SLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCC-CHhHHHHHHHHHHHCCC
Confidence 6666655543 3456677777777788888888888877666 44433344466666663
No 420
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=44.65 E-value=2.6e+02 Score=25.85 Aligned_cols=113 Identities=13% Similarity=0.096 Sum_probs=63.7
Q ss_pred CHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhC-----------CChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q 042593 115 RSNEALALFRRMAACEYTEPSEITILAVLPAIWKN-----------GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183 (352)
Q Consensus 115 ~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 183 (352)
++++|.+..+.+ |....|...+.-..+. +.+++-.++++.+.+.|-. + ....-|+.|-
T Consensus 29 d~~eav~y~k~~-------p~~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g~a--d--~lp~TIDSyT 97 (480)
T TIGR01503 29 DLQDAVDYHKSI-------PAHKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEGGA--D--FLPSTIDAYT 97 (480)
T ss_pred CHHHHHHHHHhC-------CccccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHccCC--C--ccceeeeccc
Confidence 566666666665 4444444444444332 2456677777777776522 1 2335578888
Q ss_pred hhCChHHHHHHHHHhccC-------CC----CHhhHHHHHHHH-----HcCCCHHHHHHHHHHHHhcCCCCC
Q 042593 184 KCGCIFSASKLFEDTSVD-------RK----NLVSWTTIISGF-----AMHGMGKEAVENFERMQKVGLKPN 239 (352)
Q Consensus 184 ~~g~~~~a~~~~~~~~~~-------~~----~~~~~~~li~~~-----~~~~~~~~a~~~~~~m~~~~~~p~ 239 (352)
+.++++.|.+-+++-.+. .| .+.+...++.+. .++| -..+..+++-+...|+...
T Consensus 98 R~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQvRHG-tpDarlL~e~~~a~G~~a~ 168 (480)
T TIGR01503 98 RQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQIRHG-TPDARLLAEIILAGGFTSF 168 (480)
T ss_pred ccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeeccCC-CCcHHHHHHHHHHcCCCcc
Confidence 888888888888764321 12 233344444432 2222 2346667777777766543
No 421
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=44.41 E-value=2.4e+02 Score=25.51 Aligned_cols=132 Identities=9% Similarity=-0.021 Sum_probs=76.2
Q ss_pred CcccHHHHHHHH--HhcCCcchHHHHHHHHHHhCCCCchhhHHHHH--------HHHHhcCChhHHHHHhccCCC-----
Q 042593 23 DSFTYSFLIRTC--VTLSYPNLGTQLHAVFSKVGFQSHVYVNTALG--------DMYVSLGFLKDSSKLFDELPE----- 87 (352)
Q Consensus 23 ~~~~~~~ll~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li--------~~~~~~g~~~~a~~~~~~m~~----- 87 (352)
....|-.++-.+ ....++++|.++-+.....-.--|..+++.+. .+|-..|+...-..++.....
T Consensus 123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr 202 (493)
T KOG2581|consen 123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR 202 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc
Confidence 345555555443 34578888888877655432233444443322 233355676666666665442
Q ss_pred CCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHH-------HHhCCChhhHHHHHH
Q 042593 88 RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA-------IWKNGEVRNCQLIHG 160 (352)
Q Consensus 88 ~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~-------~~~~~~~~~a~~~~~ 160 (352)
.|..+-..+ .|.|++.|...+.++.|..+..+. .-|+...=+-..+. .+-.+++..|.+.+-
T Consensus 203 hd~e~qavL------iN~LLr~yL~n~lydqa~~lvsK~-----~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~ 271 (493)
T KOG2581|consen 203 HDEEGQAVL------INLLLRNYLHNKLYDQADKLVSKS-----VYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFL 271 (493)
T ss_pred CcchhHHHH------HHHHHHHHhhhHHHHHHHHHhhcc-----cCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHH
Confidence 344443333 789999999999999999988777 33444332222222 233456677776666
Q ss_pred HHHhc
Q 042593 161 YGEKR 165 (352)
Q Consensus 161 ~~~~~ 165 (352)
.....
T Consensus 272 qa~rk 276 (493)
T KOG2581|consen 272 QALRK 276 (493)
T ss_pred HHHHh
Confidence 55443
No 422
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=44.32 E-value=2.8e+02 Score=26.16 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=20.5
Q ss_pred HHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHH
Q 042593 118 EALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGE 163 (352)
Q Consensus 118 ~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 163 (352)
+..+.+....+..|+..+......++.. ..|++..|...++++.
T Consensus 191 el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai 234 (507)
T PRK06645 191 EIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAA 234 (507)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHH
Confidence 3344444433444554444444444432 2355666655555543
No 423
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=44.01 E-value=2e+02 Score=24.28 Aligned_cols=130 Identities=11% Similarity=-0.065 Sum_probs=0.0
Q ss_pred HhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc----CCCCCcchhh--------------
Q 042593 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV----GLKPNRSWRI-------------- 244 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~-------------- 244 (352)
++++++++|.+++..- ...+.++|+...|.++-.-|++. +...+.....
T Consensus 1 v~~kky~eAidLL~~G-------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p 67 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSG-------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEP 67 (260)
T ss_dssp HHTT-HHHHHHHHHHH-------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-T
T ss_pred CccccHHHHHHHHHHH-------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcc
Q ss_pred -----hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHHHhcccccCccc
Q 042593 245 -----GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPIT 319 (352)
Q Consensus 245 -----~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~a~~ 319 (352)
.+.|..+- .....-.-|+..-..+...|.+.|++.+|+.-|-.-.+. +...+..++.-....|...++--
T Consensus 68 ~r~~fi~~ai~WS---~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~--~~~~~~~ll~~~~~~~~~~e~dl 142 (260)
T PF04190_consen 68 ERKKFIKAAIKWS---KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDP--SAFAYVMLLEEWSTKGYPSEADL 142 (260)
T ss_dssp THHHHHHHHHHHH---HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HH--HHHHHHHHHHHHHHHTSS--HHH
T ss_pred hHHHHHHHHHHHH---ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCCh--hHHHHHHHHHHHHHhcCCcchhH
Q ss_pred ccccchhhhhh
Q 042593 320 LNSQRLFFFPA 330 (352)
Q Consensus 320 ~~~~~~~~~~~ 330 (352)
+..|++..+.+
T Consensus 143 fi~RaVL~yL~ 153 (260)
T PF04190_consen 143 FIARAVLQYLC 153 (260)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
No 424
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=43.84 E-value=1.3e+02 Score=25.05 Aligned_cols=82 Identities=13% Similarity=0.030 Sum_probs=51.1
Q ss_pred HHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCC-CCChhh
Q 042593 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEV-LPDIKH 267 (352)
Q Consensus 189 ~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~-~p~~~~ 267 (352)
..|.+.|.......--...---+..-|.+.|++++|.++|+.+... ..++ |+ .+...+
T Consensus 162 ~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~--------------------yr~e-gW~~l~~~~ 220 (247)
T PF11817_consen 162 EKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASS--------------------YRRE-GWWSLLTEV 220 (247)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------------------HHhC-CcHHHHHHH
Confidence 3444555444322222233345667789999999999999998542 1112 33 234456
Q ss_pred HHHHHHHHHHcCChhHHHHHHhcC
Q 042593 268 YGCLIDILERAGRLEQAEEVASGI 291 (352)
Q Consensus 268 ~~~li~~~~~~g~~~~A~~~~~~m 291 (352)
...+..++.+.|+.++...+.=++
T Consensus 221 l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 221 LWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 667888889999988887665443
No 425
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=43.35 E-value=23 Score=18.81 Aligned_cols=23 Identities=13% Similarity=0.262 Sum_probs=13.4
Q ss_pred ChHHHHHHHHHhccCCCCHhhHH
Q 042593 187 CIFSASKLFEDTSVDRKNLVSWT 209 (352)
Q Consensus 187 ~~~~a~~~~~~~~~~~~~~~~~~ 209 (352)
.++.|..+|+......|++.+|-
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~Wi 24 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWI 24 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHH
Confidence 35566666666555556655554
No 426
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=42.81 E-value=1.6e+02 Score=22.89 Aligned_cols=60 Identities=12% Similarity=-0.037 Sum_probs=37.1
Q ss_pred hccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChH
Q 042593 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189 (352)
Q Consensus 128 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 189 (352)
+..|++++..- ..++..+....+.-.|.++++.+.+.+... +..|.-.-|+.+.+.|-+.
T Consensus 18 ~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~i-s~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 18 AQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQA-KPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCC-CcchHHHHHHHHHHCCCEE
Confidence 55566555432 245555555566677888888888887666 4444444557777776543
No 427
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=42.46 E-value=2.2e+02 Score=24.48 Aligned_cols=36 Identities=8% Similarity=0.119 Sum_probs=18.5
Q ss_pred HcCChhHHHHHHhcCCCC--CCCchhhHHHHHHHHhcc
Q 042593 277 RAGRLEQAEEVASGIPSQ--ITNVVVWRTGFLRLLINS 312 (352)
Q Consensus 277 ~~g~~~~A~~~~~~m~~~--~~~~~~~~~li~~~~~~g 312 (352)
...++.+|-.++.+.... +....+|...+.-....|
T Consensus 204 ~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa~~~G 241 (412)
T COG5187 204 MRRNFKEAAILLSDILPTFESSELISYSRAVRYAIFCG 241 (412)
T ss_pred HHHhhHHHHHHHHHHhccccccccccHHHHHHHHHHhh
Confidence 345666776666554433 444555555544433333
No 428
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=41.77 E-value=1.4e+02 Score=21.92 Aligned_cols=44 Identities=7% Similarity=0.039 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHH
Q 042593 153 RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196 (352)
Q Consensus 153 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 196 (352)
+....+|..|...|+...-+..|......+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45678899999888876456677788888888999999998886
No 429
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=41.72 E-value=5.9e+02 Score=29.14 Aligned_cols=275 Identities=11% Similarity=0.011 Sum_probs=136.2
Q ss_pred HHHHHHHhcCCcchHHHHHHHH----HHhCCCCchhhHHHHHHHHHhcCChhHHHHHhcc-CCCCCchhHHHHHHHHHhH
Q 042593 29 FLIRTCVTLSYPNLGTQLHAVF----SKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDE-LPERNLVTWNVIITGLVKW 103 (352)
Q Consensus 29 ~ll~~~~~~g~~~~a~~~~~~m----~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~~~~~~~~~i~~~~~~ 103 (352)
.+..+--+.+.+..|.-.++.- ++.. .....|-.+...|+.-+++|...-+... ...|+.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl------------- 1452 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL------------- 1452 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH-------------
Confidence 4444555677777777777763 2211 1233444555578888887777766663 333332
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHH-HHHHH
Q 042593 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEPS-EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN-CLIDT 181 (352)
Q Consensus 104 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~ 181 (352)
..-|-.....|+++.|...|+.+.+ ..|+ ..+++-+++..-..|.++.+.-..+-..... .+ ....++ .=+.+
T Consensus 1453 ~~qil~~e~~g~~~da~~Cye~~~q---~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se-~~~~~~s~~~ea 1527 (2382)
T KOG0890|consen 1453 YQQILEHEASGNWADAAACYERLIQ---KDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SE-EVDELNSLGVEA 1527 (2382)
T ss_pred HHHHHHHHhhccHHHHHHHHHHhhc---CCCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CH-HHHHHHHHHHHH
Confidence 2233345667888888888888833 2344 5566666666666666655554333222211 11 111111 11222
Q ss_pred HHhhCChHHHHHHHH--------------Hhcc-CCCCHhhH-HH-------H---HHHHHcCCCHHHHHHHHHHH----
Q 042593 182 YAKCGCIFSASKLFE--------------DTSV-DRKNLVSW-TT-------I---ISGFAMHGMGKEAVENFERM---- 231 (352)
Q Consensus 182 ~~~~g~~~~a~~~~~--------------~~~~-~~~~~~~~-~~-------l---i~~~~~~~~~~~a~~~~~~m---- 231 (352)
-=+.++++...+... .+.. ...|.... +. . +.++...|-+..+.++.-++
T Consensus 1528 aW~l~qwD~~e~~l~~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~ 1607 (2382)
T KOG0890|consen 1528 AWRLSQWDLLESYLSDRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL 1607 (2382)
T ss_pred HhhhcchhhhhhhhhcccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH
Confidence 233444444333322 0000 01222111 11 1 12233333333333322221
Q ss_pred -----Hh--cCCCCCcchhh-----------------hHhHHHHH-HHHHHhcCCCC-----ChhhHHHHHHHHHHcCCh
Q 042593 232 -----QK--VGLKPNRSWRI-----------------GEEGLKFF-DKMVEECEVLP-----DIKHYGCLIDILERAGRL 281 (352)
Q Consensus 232 -----~~--~~~~p~~~~~~-----------------~~~a~~~~-~~m~~~~~~~p-----~~~~~~~li~~~~~~g~~ 281 (352)
.+ .++.++..+.. ..+-.--+ +.+... ...| -...|-...+...+.|.+
T Consensus 1608 el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~-~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1608 ELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDL-RMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred HHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHH-hccccccchhHHHHHHHHHHHHhcccH
Confidence 11 23444433333 11111111 112111 1222 246788888888899999
Q ss_pred hHHHHHHhcCCCCCCCchhhHHHHHHHHhcccccCcccccccch
Q 042593 282 EQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRL 325 (352)
Q Consensus 282 ~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 325 (352)
+.|...+-...+. .-...+--...-+...|+...|+.+..+.+
T Consensus 1687 q~A~nall~A~e~-r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l 1729 (2382)
T KOG0890|consen 1687 QRAQNALLNAKES-RLPEIVLERAKLLWQTGDELNALSVLQEIL 1729 (2382)
T ss_pred HHHHHHHHhhhhc-ccchHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 9998766444443 134455666677889999999998888876
No 430
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=41.70 E-value=1.6e+02 Score=23.92 Aligned_cols=25 Identities=24% Similarity=-0.019 Sum_probs=16.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcC
Q 042593 211 IISGFAMHGMGKEAVENFERMQKVG 235 (352)
Q Consensus 211 li~~~~~~~~~~~a~~~~~~m~~~~ 235 (352)
+.....+.|+.++|.+.|.++...+
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3445566677777777777776653
No 431
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=41.49 E-value=1.1e+02 Score=20.79 Aligned_cols=56 Identities=14% Similarity=0.052 Sum_probs=29.1
Q ss_pred HHhcCCHHHHHHHHHHhH---hccCCCCC----hhhHHHHHHHHHhCCChhhHHHHHHHHHhc
Q 042593 110 YSRMNRSNEALALFRRMA---ACEYTEPS----EITILAVLPAIWKNGEVRNCQLIHGYGEKR 165 (352)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~---~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 165 (352)
..+.|++.+|.+-+.+.- ...+.... ......+.......|+.++|...+++..+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 346778887765555441 22221121 122223444455667777777777766543
No 432
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=41.46 E-value=82 Score=22.62 Aligned_cols=50 Identities=8% Similarity=0.015 Sum_probs=38.2
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhH
Q 042593 28 SFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD 77 (352)
Q Consensus 28 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 77 (352)
..++..+...+..-.|.++++.+.+.+...+..|.=.-++.+.+.|-+..
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli~~ 60 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLIRK 60 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeEEE
Confidence 46777888888899999999999998877777765556788888886544
No 433
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=41.41 E-value=1.1e+02 Score=26.12 Aligned_cols=52 Identities=12% Similarity=-0.007 Sum_probs=35.8
Q ss_pred HHHHHHHhhCChHHHHHHHHHhccCC--CCH-------hhHHHHHHHHHcCCCHHHHHHHH
Q 042593 177 CLIDTYAKCGCIFSASKLFEDTSVDR--KNL-------VSWTTIISGFAMHGMGKEAVENF 228 (352)
Q Consensus 177 ~li~~~~~~g~~~~a~~~~~~~~~~~--~~~-------~~~~~li~~~~~~~~~~~a~~~~ 228 (352)
-+.+-..+.+++++|+..+.++.... .|. .+...+...|.+.|+...--++.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i 68 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTI 68 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHH
Confidence 45566778899999999999987662 233 33445677788888765544444
No 434
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=41.25 E-value=48 Score=16.50 Aligned_cols=29 Identities=3% Similarity=-0.180 Sum_probs=18.9
Q ss_pred CCcchHHHHHHHHHHhCCCCchhhHHHHHH
Q 042593 38 SYPNLGTQLHAVFSKVGFQSHVYVNTALGD 67 (352)
Q Consensus 38 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 67 (352)
|+.+.+..+|+.+.... +-+...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~-~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKF-PKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHC-CCChHHHHHHHH
Confidence 45677888888887654 345566655543
No 435
>PRK10941 hypothetical protein; Provisional
Probab=41.06 E-value=2.2e+02 Score=24.13 Aligned_cols=56 Identities=11% Similarity=-0.110 Sum_probs=27.8
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHh
Q 042593 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198 (352)
Q Consensus 141 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 198 (352)
.+-.++.+.++++.|.++.+.+...... ++.-+.--.-.|.+.|.+..|..=++..
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~--dp~e~RDRGll~~qL~c~~~A~~DL~~f 241 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPE--DPYEIRDRGLIYAQLDCEHVALSDLSYF 241 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3344445555555555555555554332 3444444444455555555555544444
No 436
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=41.06 E-value=2.5e+02 Score=24.66 Aligned_cols=48 Identities=13% Similarity=0.034 Sum_probs=19.9
Q ss_pred hCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHH
Q 042593 148 KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLF 195 (352)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 195 (352)
+.|+..+|.+.++.+.+.-.-..-..+-..||.++....-+.++..++
T Consensus 287 klGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred HhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555554433211101122234555555444444443333
No 437
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=40.96 E-value=38 Score=25.10 Aligned_cols=33 Identities=15% Similarity=0.153 Sum_probs=22.6
Q ss_pred HHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 042593 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181 (352)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 181 (352)
....|.-..|..+|+.|++.|-.| + .|+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pP-d--dW~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPP-D--DWDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCC-c--cHHHHHHH
Confidence 344566777888888888888766 3 36666654
No 438
>PHA02940 hypothetical protein; Provisional
Probab=40.20 E-value=2.2e+02 Score=23.69 Aligned_cols=113 Identities=5% Similarity=-0.022 Sum_probs=57.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHH-----hHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC
Q 042593 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV-----KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS 135 (352)
Q Consensus 61 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 135 (352)
.|-..+..|+...-+..-.++.++..+|++...++.+-.+. +...++.-|.+.++.++-..+-+++ ... +.|
T Consensus 98 mF~nai~lYAnL~ainal~~~i~~~ik~~~~~t~~~~i~FtqkA~dtv~~la~~yvq~vk~d~r~~~a~~l-~ke-Ls~- 174 (315)
T PHA02940 98 MFDNAIELYANLAAINALLRLIRSFIKPEPTLTTPLFIDFTQKAKDTVILLAGRYVQDVKKDDRRTIANKL-SKE-LSW- 174 (315)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhCCCCCCcCchHHHHHHHHhhhHHHHHHHHHHHHccccHHHHHHHHH-Hhh-hhH-
Confidence 34445555555444444455555544443322222222211 4555666777777666655555555 211 001
Q ss_pred hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q 042593 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183 (352)
Q Consensus 136 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 183 (352)
.+..--...+++....-++.+.+..-.. ...+|+.|..++-
T Consensus 175 ------~~d~~enepdle~d~keie~~lE~~~dl-~rGtY~vL~~ald 215 (315)
T PHA02940 175 ------TIDYQENEPDLESDFKEIEEELEEKDDL-SRGTYKVLKRALD 215 (315)
T ss_pred ------HHHHHhcCcchhhhHHHHHHHHhccchh-hhhHHHHHHHHHH
Confidence 1112223345666666666666666555 6777877776653
No 439
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=40.01 E-value=60 Score=20.60 Aligned_cols=51 Identities=8% Similarity=0.035 Sum_probs=33.6
Q ss_pred CCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHh
Q 042593 132 TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK 184 (352)
Q Consensus 132 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 184 (352)
+.|....++.++...++-.-++++...+.+..+.|.- +..+|-.-++.+++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~I--~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGSI--DLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS---HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHH
Confidence 3456666777777777777777777777777777754 55666555555554
No 440
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=39.89 E-value=2.6e+02 Score=24.55 Aligned_cols=61 Identities=11% Similarity=0.004 Sum_probs=36.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcC
Q 042593 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRG 166 (352)
Q Consensus 106 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 166 (352)
|.-+.-+.|+..+|.+.|.++.++..+.--......++.++....-+.++..++...-+..
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdis 341 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDIS 341 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3444556788888888888873432211111234467777777776766666666554443
No 441
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=39.47 E-value=1.2e+02 Score=20.62 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=16.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHh
Q 042593 211 IISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 211 li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
+.......|+.++|...+++.++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 34455667888888888877665
No 442
>PF15469 Sec5: Exocyst complex component Sec5
Probab=39.31 E-value=1.9e+02 Score=22.69 Aligned_cols=58 Identities=12% Similarity=0.181 Sum_probs=29.5
Q ss_pred hhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
...+..++..-.+...+..+..++++.. -....-.-+.-+.+.|+++.+...|.+...
T Consensus 57 ~~~~~pll~~~~k~~~l~~~l~~l~r~~----flF~LP~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 57 NSVFKPLLERREKADKLRNALEFLQRNR----FLFNLPSNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHccHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 3444455555555555555555555432 111122334555666666666666666554
No 443
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=39.13 E-value=68 Score=23.95 Aligned_cols=70 Identities=9% Similarity=-0.094 Sum_probs=34.4
Q ss_pred CChhhHHHHHHHHHhCC---ChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC
Q 042593 134 PSEITILAVLPAIWKNG---EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203 (352)
Q Consensus 134 p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 203 (352)
++..+--.+.-++.+.. ++.+...+++.+.+...+.......--|.-++.+.++++.+.+..+.+.+..|
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 44444444444455443 34445566666655222210222222444556666777777776666544444
No 444
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=38.88 E-value=1.4e+02 Score=21.06 Aligned_cols=63 Identities=10% Similarity=0.018 Sum_probs=37.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCC--ChhhHHHHHHHHHhcCCC
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG--EVRNCQLIHGYGEKRGFN 168 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~ 168 (352)
...++..|...+++++|..-+.++ ..... .......++..+...+ .-+.+..++..+.+.+..
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L-~~~~~--~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~ 69 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLEL-KLPEQ--HHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVI 69 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh-CCCcc--hHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCc
Confidence 445677888899999999999998 43221 1223334444444332 334455666666655543
No 445
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=38.56 E-value=2.8e+02 Score=24.47 Aligned_cols=90 Identities=16% Similarity=0.247 Sum_probs=59.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhc--cCCCCChhhHH--HHHHHHHhCCChhhHHHHHHHHHh-----cCCCCCchh
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAAC--EYTEPSEITIL--AVLPAIWKNGEVRNCQLIHGYGEK-----RGFNAFDIH 173 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 173 (352)
...++...-+.+|.++|++.++++... .--.|+.+.|. .+.+.+...||..++.+.+++.++ .++++ +++
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~-~Vh 156 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTS-NVH 156 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCCh-hhh
Confidence 445556666777999999999998322 12356766554 455556678999999999999988 66665 443
Q ss_pred -hHHHH-HHHHHhhCChHHHHH
Q 042593 174 -VSNCL-IDTYAKCGCIFSASK 193 (352)
Q Consensus 174 -~~~~l-i~~~~~~g~~~~a~~ 193 (352)
.|..+ -..|.+.|++....+
T Consensus 157 ~~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 157 SSFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred hhHHHHHHHHHHHHHhHHHHHH
Confidence 33333 334455666665444
No 446
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=38.44 E-value=2.8e+02 Score=24.39 Aligned_cols=69 Identities=13% Similarity=0.082 Sum_probs=40.2
Q ss_pred chhhHHHHHHHHHhhCChHHHHHHHHHhccC------CCCHhhHHHHHH-HHHcCCCHHHHHHHHHHHHhcCCCCC
Q 042593 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVD------RKNLVSWTTIIS-GFAMHGMGKEAVENFERMQKVGLKPN 239 (352)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~p~ 239 (352)
-...+......||+.||-+.|++.++..-.. +.|+..+.+-+. .|..+.-+.+-.+..+.+.+.|-..+
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWe 178 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWE 178 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChh
Confidence 3455666677788888888888887764332 345544443332 23344445666666666666665444
No 447
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=37.87 E-value=3.7e+02 Score=27.71 Aligned_cols=127 Identities=9% Similarity=0.005 Sum_probs=73.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhccCCC--CChhhHHHHHHHHH-hCCChhhHHHHHHHHHhcCCCCCchhhHHHHH--
Q 042593 105 GIIDGYSRMNRSNEALALFRRMAACEYTE--PSEITILAVLPAIW-KNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI-- 179 (352)
Q Consensus 105 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~--p~~~t~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li-- 179 (352)
..++.+...+++.+|..+.++-+-+-++- -|...|..=+..+. +.++.+-..-++..+.+..+. ...|....
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt---~tmY~~~~~~ 775 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVT---KTMYKDTYPP 775 (928)
T ss_pred HHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhccccccc---cccccccccc
Confidence 45567788999999988877652222222 23334444444444 345555555555555544332 22232222
Q ss_pred ----------HHHHhhCChHHHHHHHHHhcc-CCCCHhhHHHHHHHHHcCC--CHHHHHHHHHHHHhc
Q 042593 180 ----------DTYAKCGCIFSASKLFEDTSV-DRKNLVSWTTIISGFAMHG--MGKEAVENFERMQKV 234 (352)
Q Consensus 180 ----------~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~ 234 (352)
......++++...+.+.+... ......-...++.+|++.+ ++++|+.+..++++.
T Consensus 776 ~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 776 SSEAQPNSNSSTASSESKVNKICDAIRKALEKPKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred ccccccccccCCCccccHHHHHHHHHHHHhcccccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 222334456665555544332 2223344567888999998 999999999999876
No 448
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=37.01 E-value=77 Score=22.50 Aligned_cols=37 Identities=16% Similarity=0.127 Sum_probs=16.0
Q ss_pred CCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCC
Q 042593 114 NRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGE 151 (352)
Q Consensus 114 ~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~ 151 (352)
+..-.|.++++++ +..+..++..|..-.|+.+...|-
T Consensus 14 ~~~~sa~ei~~~l-~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 14 DGHLTAEEIYERL-RKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred CCCCCHHHHHHHH-HhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3334444455555 333333444444444444444443
No 449
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=36.92 E-value=1.4e+02 Score=20.40 Aligned_cols=59 Identities=8% Similarity=0.129 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCC
Q 042593 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNR 115 (352)
Q Consensus 43 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~ 115 (352)
...+++.+.+.|+- +...+..+ -+...+.+++.++++.++.++..+ |..+..++-..+.
T Consensus 22 ~~~v~~~L~~~gvl-t~~~~~~I---~~~~t~~~k~~~Lld~L~~RG~~A----------F~~F~~aL~~~~~ 80 (90)
T cd08332 22 LDELLIHLLQKDIL-TDSMAESI---MAKPTSFSQNVALLNLLPKRGPRA----------FSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHHcCCC-CHHHHHHH---HcCCCcHHHHHHHHHHHHHhChhH----------HHHHHHHHHhcCh
Confidence 45677788887742 33333322 235567899999999999988888 6666666655443
No 450
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=36.82 E-value=3.7e+02 Score=25.45 Aligned_cols=60 Identities=17% Similarity=0.165 Sum_probs=40.5
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHhccCCCCH---hhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 175 SNCLIDTYAKCGCIFSASKLFEDTSVDRKNL---VSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 175 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
...++.-|.+.+++++|..++..|.-..-.. ...+.+...+.+..--++.+..++.+.-.
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 3467888999999999999999985432222 34445556666666556666666666553
No 451
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=36.80 E-value=2e+02 Score=22.32 Aligned_cols=59 Identities=10% Similarity=-0.030 Sum_probs=39.2
Q ss_pred CCCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhH
Q 042593 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD 77 (352)
Q Consensus 15 ~g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 77 (352)
.|+++ +.. =..++..+......-.|.++++.+.+.+...+..|--.-++.+...|-+.+
T Consensus 20 ~GlR~---T~q-R~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~~ 78 (169)
T PRK11639 20 RNVRL---TPQ-RLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHK 78 (169)
T ss_pred cCCCC---CHH-HHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEEE
Confidence 56655 443 235555666666677888899988888866666665555777777775543
No 452
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=36.42 E-value=2.6e+02 Score=23.43 Aligned_cols=113 Identities=8% Similarity=0.032 Sum_probs=67.8
Q ss_pred CChhHHHHHhccCC--CCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhh-HHHHHHHHHhC
Q 042593 73 GFLKDSSKLFDELP--ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT-ILAVLPAIWKN 149 (352)
Q Consensus 73 g~~~~a~~~~~~m~--~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t-~~~ll~~~~~~ 149 (352)
.+++.|...|.+.. .|++.+| |+.-+-++.+..+++.+..=-.+. ..+.||..- ...+-.++...
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y---------~tnralchlk~~~~~~v~~dcrra---lql~~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASY---------YTNRALCHLKLKHWEPVEEDCRRA---LQLDPNLVKAHYFLGQWLLQS 91 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchh---------hhhHHHHHHHhhhhhhhhhhHHHH---HhcChHHHHHHHHHHHHHHhh
Confidence 44555555555443 3666565 677777777888887766544433 224566553 33344445566
Q ss_pred CChhhHHHHHHHHH----hcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHh
Q 042593 150 GEVRNCQLIHGYGE----KRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198 (352)
Q Consensus 150 ~~~~~a~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 198 (352)
..++.|...+++.. +..+.+ .....+.|..+--+.-...+..++.++.
T Consensus 92 ~~~~eaI~~Lqra~sl~r~~~~~~-~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYSLLREQPFTF-GDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred ccccHHHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 77888887777663 333444 5666777777666665666666666554
No 453
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=36.42 E-value=2.6e+02 Score=23.56 Aligned_cols=27 Identities=4% Similarity=0.138 Sum_probs=17.2
Q ss_pred cHHHHHHHHHhcCCcchHHHHHHHHHH
Q 042593 26 TYSFLIRTCVTLSYPNLGTQLHAVFSK 52 (352)
Q Consensus 26 ~~~~ll~~~~~~g~~~~a~~~~~~m~~ 52 (352)
....+++.+.+.+....|.++.+.+..
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~ 110 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRS 110 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhcc
Confidence 455666667676666666666666543
No 454
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=35.88 E-value=38 Score=21.37 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=17.8
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCh
Q 042593 113 MNRSNEALALFRRMAACEYTEPSE 136 (352)
Q Consensus 113 ~~~~~~a~~~~~~m~~~~~~~p~~ 136 (352)
.-|++.|+..|.++.....++|+.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 458999999999994445565554
No 455
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=35.80 E-value=1.4e+02 Score=20.24 Aligned_cols=43 Identities=9% Similarity=0.019 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhcc
Q 042593 157 LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200 (352)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 200 (352)
++|+.....|+.. ++.+|..+++.+.-+=-.+...++++.|-.
T Consensus 29 EL~ELa~~AGv~~-dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPM-DPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCc-ChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 7777777888887 888888888887777777777777777643
No 456
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=35.33 E-value=51 Score=30.12 Aligned_cols=90 Identities=12% Similarity=0.179 Sum_probs=54.0
Q ss_pred ChHHHHHHHHHhccCCCCH----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh------------
Q 042593 187 CIFSASKLFEDTSVDRKNL----------VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI------------ 244 (352)
Q Consensus 187 ~~~~a~~~~~~~~~~~~~~----------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------ 244 (352)
.-+.-+++|+.+.-..|.+ ..|++|..++.++-.+.+ ..+=.+|...+-..+..+..
T Consensus 462 k~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~g~~d-~~ik~E~i~~~nqkse~im~~Gkht~~~~ckn 540 (650)
T KOG4334|consen 462 KQQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNLGWND-LVIKKEMIGNGNQKSEVIMILGKHTEEAECKN 540 (650)
T ss_pred cchhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhcCCcc-eeeeeeccCCCCccceeEeeeccceeeeeeec
Confidence 3445567777765444443 347888888777766541 22233455444444444433
Q ss_pred hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc
Q 042593 245 GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERA 278 (352)
Q Consensus 245 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 278 (352)
..++.++-..-+-. .+.|...+|.+|++.|.+.
T Consensus 541 kr~gkQlASQ~ilq-~lHPh~~twGSlLriYGr~ 573 (650)
T KOG4334|consen 541 KRQGKQLASQRILQ-KLHPHLLTWGSLLRIYGRL 573 (650)
T ss_pred hhHHHHHHHHHHHH-HhCHHhhhHHHHHHHhhhh
Confidence 44555544333333 6789999999999999876
No 457
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=35.32 E-value=2.9e+02 Score=23.76 Aligned_cols=111 Identities=15% Similarity=0.047 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhHhccCC---CCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHH
Q 042593 116 SNEALALFRRMAACEYT---EPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSAS 192 (352)
Q Consensus 116 ~~~a~~~~~~m~~~~~~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 192 (352)
.+.|.+.|++....... ..+......++....+.|+.+.-..+++...... +......++.+++...+.+...
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~----~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNST----SPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTS----THHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccC----CHHHHHHHHHhhhccCCHHHHH
Confidence 45778888887333222 3455566777788888888776666666655432 5667788999999999998888
Q ss_pred HHHHHhccCC-CCHhhHHHHHHHHHcCCCH--HHHHHHHHH
Q 042593 193 KLFEDTSVDR-KNLVSWTTIISGFAMHGMG--KEAVENFER 230 (352)
Q Consensus 193 ~~~~~~~~~~-~~~~~~~~li~~~~~~~~~--~~a~~~~~~ 230 (352)
++++...... ........++.++...+.. +.+.+.+.+
T Consensus 222 ~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 222 RLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
Confidence 8888876542 2222234445555523322 555555443
No 458
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.95 E-value=3.2e+02 Score=26.04 Aligned_cols=56 Identities=9% Similarity=-0.057 Sum_probs=44.7
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHH-hcCChhHHHHHhccCC
Q 042593 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYV-SLGFLKDSSKLFDELP 86 (352)
Q Consensus 31 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~ 86 (352)
|..+.+.|.+..|+++-..+.+....-|+...-.+|+.|+ +..++.-.+++++...
T Consensus 349 m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e 405 (665)
T KOG2422|consen 349 MQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPE 405 (665)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4567789999999999888888774457888888899887 5677888888887764
No 459
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=34.84 E-value=2.4e+02 Score=22.65 Aligned_cols=55 Identities=13% Similarity=-0.025 Sum_probs=43.1
Q ss_pred HHHHHHHHhhCChHHHHHHHHHhccC----------------CCCHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 042593 176 NCLIDTYAKCGCIFSASKLFEDTSVD----------------RKNLVSWTTIISGFAMHGMGKEAVENFER 230 (352)
Q Consensus 176 ~~li~~~~~~g~~~~a~~~~~~~~~~----------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 230 (352)
-+++..|-+.-++.+..++++.|... .+--..-|.....+.+.|.++.|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 36777888888999999998876432 12335577888899999999999999984
No 460
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=34.23 E-value=1.4e+02 Score=20.71 Aligned_cols=48 Identities=8% Similarity=0.016 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 042593 188 IFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235 (352)
Q Consensus 188 ~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 235 (352)
.+...+.+...........|++.|+.++...|.-.-|..+-+.+...|
T Consensus 47 ~eq~~qmL~~W~~~~G~~At~~~L~~aL~~~~~~~~Ae~I~~~l~~~~ 94 (96)
T cd08315 47 REQLYQMLLTWVNKTGRKASVNTLLDALEAIGLRLAKESIQDELISSG 94 (96)
T ss_pred HHHHHHHHHHHHHhhCCCcHHHHHHHHHHHcccccHHHHHHHHHHHcC
Confidence 344444444443333344556666666666666666666655555544
No 461
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=34.13 E-value=38 Score=25.09 Aligned_cols=33 Identities=9% Similarity=-0.144 Sum_probs=24.8
Q ss_pred HhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHH
Q 042593 35 VTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY 69 (352)
Q Consensus 35 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~ 69 (352)
-..|.-..|-.+|+.|.+.|-+|| .|+.|+...
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 345666779999999999998876 466677543
No 462
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=33.64 E-value=4.3e+02 Score=25.25 Aligned_cols=198 Identities=10% Similarity=-0.060 Sum_probs=106.3
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHh
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~ 102 (352)
....|..+++.+... +.+...++++++.. . + ...+..++++....|..+...-+.+.+.........+
T Consensus 309 ~~~~f~~lv~~lR~~-~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea------- 376 (574)
T smart00638 309 AAAKFLRLVRLLRTL-SEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEA------- 376 (574)
T ss_pred hHHHHHHHHHHHHhC-CHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHH-------
Confidence 455677777666544 56667777777754 2 1 6788899999999999888888888777643322111
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHhHhccCCCCCh-------hhHHHHHHHHHhCCCh------hhHHHHHHHHHhcCC
Q 042593 103 WTGIIDGYS--RMNRSNEALALFRRMAACEYTEPSE-------ITILAVLPAIWKNGEV------RNCQLIHGYGEKRGF 167 (352)
Q Consensus 103 ~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~~p~~-------~t~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~ 167 (352)
-..+..... ..-. .+.++.+.++.+.....+.. .+|..+++-+|..... ++....+.+..+...
T Consensus 377 ~~~~~~~~~~~~~Pt-~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~ 455 (574)
T smart00638 377 AQLLAVLPHTARYPT-EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAV 455 (574)
T ss_pred HHHHHHHHHhhhcCC-HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH
Confidence 122222222 2233 34444444443555555554 3455666655544432 233333333322221
Q ss_pred CCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcC--CCHHHHHHHHHHHHh
Q 042593 168 NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMH--GMGKEAVENFERMQK 233 (352)
Q Consensus 168 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~ 233 (352)
...+..--...|.+++..|.......+-.-+... ......-...+.++.+. ...+++..++-.+-.
T Consensus 456 ~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~ 524 (574)
T smart00638 456 SKGDEEEIQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYL 524 (574)
T ss_pred hcCCchheeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHc
Confidence 1113333456789999998855544433333312 33444455556666533 355666666655544
No 463
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=33.10 E-value=4.4e+02 Score=25.17 Aligned_cols=138 Identities=14% Similarity=0.032 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhHhccC-CCCChhhHHHHHHH-HHhCCChhhHHHHHHHHHh-------cCCCCCchhhHHHHHHHHHhhC
Q 042593 116 SNEALALFRRMAACEY-TEPSEITILAVLPA-IWKNGEVRNCQLIHGYGEK-------RGFNAFDIHVSNCLIDTYAKCG 186 (352)
Q Consensus 116 ~~~a~~~~~~m~~~~~-~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~li~~~~~~g 186 (352)
...|.+.++.. ...| +.+-...-.....+ .....|.+.|...++...+ .| ......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~-a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~----~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 228 LSEAFKYYREA-AKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG----LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhHHHHHHHHH-HhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc----CCccccHHHHHHhcCC
Confidence 45677777777 4333 21111112222223 4466788888888888766 44 2234455666666543
Q ss_pred -----ChHHHHHHHHHhccC-CCCHhhHHHHHHHHHc-CCCHHHHHHHHHHHHhcCCCCCcchhh------------hHh
Q 042593 187 -----CIFSASKLFEDTSVD-RKNLVSWTTIISGFAM-HGMGKEAVENFERMQKVGLKPNRSWRI------------GEE 247 (352)
Q Consensus 187 -----~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~------------~~~ 247 (352)
+.+.|..++...... .|+....-..+.-... ..+...|.++|....+.|..+-..... ...
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLEL 382 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHH
Confidence 566688888775444 4554433332222222 245678888888877666432111111 556
Q ss_pred HHHHHHHHHHh
Q 042593 248 GLKFFDKMVEE 258 (352)
Q Consensus 248 a~~~~~~m~~~ 258 (352)
|..++.+..+.
T Consensus 383 A~~~~k~aA~~ 393 (552)
T KOG1550|consen 383 AFAYYKKAAEK 393 (552)
T ss_pred HHHHHHHHHHc
Confidence 66666666655
No 464
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=33.10 E-value=1.1e+02 Score=21.88 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=22.8
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCC
Q 042593 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC 187 (352)
Q Consensus 141 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 187 (352)
.++..+...+..-.|.++++.+.+.+... +..|.-.-|+.+.+.|-
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~i-s~~TVYR~L~~L~e~Gl 57 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRI-SLATVYRTLDLLEEAGL 57 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT---HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCc-CHHHHHHHHHHHHHCCe
Confidence 34444555555556666666666655554 44333333455555553
No 465
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=32.99 E-value=1.1e+02 Score=18.49 Aligned_cols=17 Identities=18% Similarity=0.034 Sum_probs=6.6
Q ss_pred HHhhCChHHHHHHHHHh
Q 042593 182 YAKCGCIFSASKLFEDT 198 (352)
Q Consensus 182 ~~~~g~~~~a~~~~~~~ 198 (352)
+.+.|+++.|.+..+.+
T Consensus 11 ~ykl~~Y~~A~~~~~~l 27 (53)
T PF14853_consen 11 HYKLGEYEKARRYCDAL 27 (53)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHH
Confidence 33444444444444443
No 466
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.88 E-value=4.3e+02 Score=24.95 Aligned_cols=29 Identities=17% Similarity=0.314 Sum_probs=16.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Q 042593 210 TIISGFAMHGMGKEAVENFERMQKVGLKPN 239 (352)
Q Consensus 210 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 239 (352)
.+++++ ..++.++|..+++++...|..|.
T Consensus 247 ~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 247 GIAAAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 344443 33566666666666666654443
No 467
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=32.87 E-value=1.2e+02 Score=28.92 Aligned_cols=186 Identities=12% Similarity=0.076 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHhcCC--hhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC
Q 042593 58 HVYVNTALGDMYVSLGF--LKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS 135 (352)
Q Consensus 58 ~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 135 (352)
+...|..-+..+..+++ ......++...+-++... -..++..|.+.|-.+.|.++.+.+ ...-..
T Consensus 371 ~~~lW~vai~yL~~c~~~g~~~i~~lL~~~p~~t~~~----------~~k~l~iC~~~~L~~~a~~I~~~~-~~~~~~-- 437 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEGRERIEELLPRVPLDTNDD----------AEKLLEICAELGLEDVAREICKIL-GQRLLK-- 437 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS-HHHHHHHGGG----SHHH----------HHHHHHHHHHHT-HHHHHHHHHHH-HHHHHH--
T ss_pred CcchHHHHHHHHHHCChhhHHHHHHHHhhCCCCchHH----------HHHHHHHHHHCCCHHHHHHHHHHH-HHHHHH--
Q ss_pred hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHH
Q 042593 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGF 215 (352)
Q Consensus 136 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~ 215 (352)
..-|..-+..+.+.|+.+.+..+...+.+..... +......+++......-....+..+....+ ..-.
T Consensus 438 ~~~~g~AL~~~~ra~d~~~v~~i~~~ll~~~~~~-~~~~~~~ll~~i~~~~~~~~~L~fla~yre-----------F~~~ 505 (566)
T PF07575_consen 438 EGRYGEALSWFIRAGDYSLVTRIADRLLEEYCNN-GEPLDDDLLDNIGSPMLLSQRLSFLAKYRE-----------FYEL 505 (566)
T ss_dssp HHHHHHHHHHHH--------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHhcC-CCcccHHHHHHhcchhhhhhhhHHHHHHHH-----------HHHH
Q ss_pred HcCCCHHHHHHHHHHHHhcCCCCCcchhh-hHhHHHHHHHHHHhcCCCCChhhHHHH
Q 042593 216 AMHGMGKEAVENFERMQKVGLKPNRSWRI-GEEGLKFFDKMVEECEVLPDIKHYGCL 271 (352)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~~~a~~~~~~m~~~~~~~p~~~~~~~l 271 (352)
.+.|++.+|.+.+-.+.+.+..|...... ...+.-+++. +. .+-....||..|
T Consensus 506 ~~~~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL~d~lplL~~--~~-~~f~~~~~~~ll 559 (566)
T PF07575_consen 506 YDEGDFREAASLLVSLLKSPIAPKSFWPLLLCDALPLLES--DE-VIFSSSDTYELL 559 (566)
T ss_dssp ---------------------------------------------------------
T ss_pred HhhhhHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHhCC--CC-CccCHHHHHHHH
No 468
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.36 E-value=4.3e+02 Score=24.78 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=20.6
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Q 042593 204 NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239 (352)
Q Consensus 204 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 239 (352)
+...+..++.+....+....|+.++++|.+.|..|.
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 334444455555554455667777777777665554
No 469
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=31.49 E-value=2.7e+02 Score=22.29 Aligned_cols=101 Identities=18% Similarity=0.089 Sum_probs=55.4
Q ss_pred HHHHHHHhhCChHHHHHHHHHhccC----CCCHhhHHHHHH-HHHcCCC--HHHHHHHHHHHHhcCCCCCcchhhhHhHH
Q 042593 177 CLIDTYAKCGCIFSASKLFEDTSVD----RKNLVSWTTIIS-GFAMHGM--GKEAVENFERMQKVGLKPNRSWRIGEEGL 249 (352)
Q Consensus 177 ~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~li~-~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~~~a~ 249 (352)
...-.....|++++|.+-++++... +.-...|.-+.. +++.++. +-+|.-++.-+... ..|...-.
T Consensus 34 ~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~-~~ps~~EL------ 106 (204)
T COG2178 34 GEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG-RLPSPEEL------ 106 (204)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC-CCCCHHHc------
Confidence 3344556677888888888776433 223344555554 6666664 56676666666554 33332111
Q ss_pred HHHHHHHHhcCCCCChhhH---------HHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 250 KFFDKMVEECEVLPDIKHY---------GCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 250 ~~~~~m~~~~~~~p~~~~~---------~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
|++|-.+.. ...+--..+.|+++.|++.++-|...
T Consensus 107 ----------~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 107 ----------GVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKL 150 (204)
T ss_pred ----------CCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 332221111 01122334678999999988887654
No 470
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=31.40 E-value=5.3e+02 Score=25.55 Aligned_cols=46 Identities=9% Similarity=0.027 Sum_probs=27.0
Q ss_pred HHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 042593 117 NEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEK 164 (352)
Q Consensus 117 ~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 164 (352)
++....+.+..+..|+..+......++... .|++..+..+++++..
T Consensus 181 eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia 226 (709)
T PRK08691 181 QQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA 226 (709)
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 444455555545566666666665555544 4777777777766554
No 471
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=30.50 E-value=2.4e+02 Score=24.80 Aligned_cols=35 Identities=23% Similarity=0.144 Sum_probs=24.8
Q ss_pred HHHHHHHhhCChHHHHHHHHHhcc---CCCCHhhHHHH
Q 042593 177 CLIDTYAKCGCIFSASKLFEDTSV---DRKNLVSWTTI 211 (352)
Q Consensus 177 ~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~l 211 (352)
.+++.|.+.|.+++|.++.....+ ..|+......+
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i 148 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSI 148 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHH
Confidence 788899999999999888776533 25665544443
No 472
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=30.36 E-value=3.6e+02 Score=23.30 Aligned_cols=121 Identities=11% Similarity=-0.046 Sum_probs=65.0
Q ss_pred hhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHh---ccCCCCChhh-HHHHHHHHHhCC
Q 042593 75 LKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA---CEYTEPSEIT-ILAVLPAIWKNG 150 (352)
Q Consensus 75 ~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~p~~~t-~~~ll~~~~~~~ 150 (352)
+++-.+-+++..+.|..++.+-+ |-.+..-|++.+|.+.+.+...+... ..|.+.|... -.-+.-.|....
T Consensus 95 i~Elde~i~~~eedngE~e~~ea-----~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~ 169 (412)
T COG5187 95 IEELDERIREKEEDNGETEGSEA-----DRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRK 169 (412)
T ss_pred HHHHHHHHHHHhhcccchHHHHH-----HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHH
Confidence 33333334444444544444333 78888899999999999888776522 2344555431 122222333444
Q ss_pred ChhhHHHHHHHHHhcCCCCCchhhHHHHHHH-HHhhCChHHHHHHHHHhcc
Q 042593 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT-YAKCGCIFSASKLFEDTSV 200 (352)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~~~ 200 (352)
-+++-.+..+.+.+.|..-....-|...-.. +....++.+|-.++-+...
T Consensus 170 vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 170 VVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 4566667777777777543122222222222 2234467777777766543
No 473
>cd08789 CARD_IPS-1_RIG-I Caspase activation and recruitment domains (CARDs) found in IPS-1 and RIG-I-like RNA helicases. Caspase activation and recruitment domains (CARDs) found in IPS-1 (Interferon beta promoter stimulator protein 1) and Retinoic acid Inducible Gene I (RIG-I)-like DEAD box helicases. RIG-I-like helicases and IPS-1 play important roles in the induction of interferons in response to viral infection. They are crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. RIG-I-like helicases, including MDA5 and RIG-I, contain two N-terminal CARD domains and a C-terminal DEAD box RNA helicase domain. They are cytoplasmic RNA helicases that play an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. MDA5 and RIG-I associate with IPS-1 through a CARD-CAR
Probab=30.23 E-value=1.6e+02 Score=19.83 Aligned_cols=51 Identities=6% Similarity=-0.197 Sum_probs=33.9
Q ss_pred cccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHH
Q 042593 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS 79 (352)
Q Consensus 24 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 79 (352)
......+.......|+.+.|..+++.+. .| +.-|..+++++...|.-+-|.
T Consensus 32 ~~d~e~I~a~~~~~G~~~aa~~Ll~~L~-r~----~~Wf~~Fl~AL~~~~~~~LA~ 82 (84)
T cd08789 32 AEDKERIQAAENNSGNIKAAWTLLDTLV-RR----DNWLEPFLDALRECGLGHLAR 82 (84)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHh-cc----CChHHHHHHHHHHcCCHHHHH
Confidence 3344455555556788888888888887 33 445666788888777665554
No 474
>PRK09857 putative transposase; Provisional
Probab=30.17 E-value=2.5e+02 Score=24.18 Aligned_cols=65 Identities=14% Similarity=0.115 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Q 042593 175 SNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239 (352)
Q Consensus 175 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 239 (352)
+..+++...+.|+.++..++++.+....| .....-++..-+.+.|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 44555555666776666666666543322 222333455556666666777778888887776543
No 475
>PHA00425 DNA packaging protein, small subunit
Probab=29.78 E-value=1.7e+02 Score=19.38 Aligned_cols=58 Identities=14% Similarity=0.045 Sum_probs=35.7
Q ss_pred ChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCcccccccchhhhhhHHHHhhh
Q 042593 280 RLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAALYALTQ 337 (352)
Q Consensus 280 ~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 337 (352)
+.+.|..++..++.. +.++..||.+-.-+.++...-.-++.-...+-...+.+..+..
T Consensus 14 DTE~a~~mL~DL~ddekRtPQLYnAIgKlL~RHkF~isKl~pD~~iLg~la~~l~ey~~ 72 (88)
T PHA00425 14 DTEMAQRMLADLKDDEKRTPQLYNAIGKLLDRHKFQISKLQPDENILGGLAAALEEYKE 72 (88)
T ss_pred hHHHHHHHHHHhcCccccChHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHHHH
Confidence 456777777777766 6777788887777777665555444444444444444443333
No 476
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=29.46 E-value=4e+02 Score=23.59 Aligned_cols=124 Identities=12% Similarity=0.098 Sum_probs=70.9
Q ss_pred HHHhcCCHHHHHHHHHHhHh-ccCCCCCh-------hhHHHHHHHHHhCCChhhHHHHHHHHHhc----CCCCCchhhHH
Q 042593 109 GYSRMNRSNEALALFRRMAA-CEYTEPSE-------ITILAVLPAIWKNGEVRNCQLIHGYGEKR----GFNAFDIHVSN 176 (352)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~-~~~~~p~~-------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ 176 (352)
.....++.+++..++..... ..|...+. .+...+.+-+.+.|+.++...+....... +-.- ......
T Consensus 13 ~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kak-aaKlvR 91 (411)
T KOG1463|consen 13 NLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAK-AAKLVR 91 (411)
T ss_pred HhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHH-HHHHHH
Confidence 34456677888888888843 23333333 24556777788888888776666654321 1111 334445
Q ss_pred HHHHHHHhhC-ChHHHHHHHHHhccC-CCCH------hhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 177 CLIDTYAKCG-CIFSASKLFEDTSVD-RKNL------VSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 177 ~li~~~~~~g-~~~~a~~~~~~~~~~-~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
.+++.+.... ..+.-..+..++... ...- ..=..++..|...+++.+|..+...+.+
T Consensus 92 ~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~r 156 (411)
T KOG1463|consen 92 SLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLR 156 (411)
T ss_pred HHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5566555443 233344444443222 1111 1123578889999999999887776654
No 477
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=29.15 E-value=3.6e+02 Score=24.39 Aligned_cols=42 Identities=19% Similarity=0.084 Sum_probs=29.3
Q ss_pred hhhHHHHHHhhccCCCCCCCCCcccHHHHHHHHHhcCCcchHHHHHH
Q 042593 2 LVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHA 48 (352)
Q Consensus 2 ~~~~~M~~~~~~~~g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 48 (352)
-+++.+.+ .|+.|.-....+-.+++.++...+..++..+++.
T Consensus 100 Gv~kaL~e-----~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~ 141 (391)
T cd07229 100 GVVKALWL-----RGLLPRIITGTATGALIAALVGVHTDEELLRFLD 141 (391)
T ss_pred HHHHHHHH-----cCCCCceEEEecHHHHHHHHHHcCCHHHHHHHHh
Confidence 35677788 8999955556677777777777766666655554
No 478
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=28.62 E-value=2.1e+02 Score=20.05 Aligned_cols=60 Identities=10% Similarity=0.063 Sum_probs=31.7
Q ss_pred HHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCC--CHHHHHHHHHHHHhcCC
Q 042593 177 CLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG--MGKEAVENFERMQKVGL 236 (352)
Q Consensus 177 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~ 236 (352)
.++.-|...|+.++|...+.++....-.......++..+...+ .-+-+..++..+.+.+.
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el~~~~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKELKLPSQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHTT-GGGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 4556666778888888888776322112233334444444432 22445666666666554
No 479
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=28.49 E-value=1.5e+02 Score=18.47 Aligned_cols=14 Identities=14% Similarity=0.121 Sum_probs=6.0
Q ss_pred cCCHHHHHHHHHHh
Q 042593 113 MNRSNEALALFRRM 126 (352)
Q Consensus 113 ~~~~~~a~~~~~~m 126 (352)
.|++=+|.++++++
T Consensus 12 ~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 12 AGDFFEAHEVLEEL 25 (62)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred CCCHHHhHHHHHHH
Confidence 44444444444444
No 480
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=28.29 E-value=3.3e+02 Score=26.55 Aligned_cols=76 Identities=9% Similarity=0.007 Sum_probs=46.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChh------H
Q 042593 210 TIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLE------Q 283 (352)
Q Consensus 210 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~------~ 283 (352)
+|+.+|..+|++..+.++++......- |-+.-...+|..|+.+.+.|.++ .
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~-----------------------~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~ 89 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNK-----------------------GDKILLPMINLYIREIIQRGSFELTDVLSN 89 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCc-----------------------CCeeehhHHHHHHHHHHhcCCccHHHHHHH
Confidence 788999999999999999988876421 33333445666677777777643 2
Q ss_pred HHHHHhcCCCCCCCchhhHHHHHHHH
Q 042593 284 AEEVASGIPSQITNVVVWRTGFLRLL 309 (352)
Q Consensus 284 A~~~~~~m~~~~~~~~~~~~li~~~~ 309 (352)
|.++++...- ..|..||..|+.+-+
T Consensus 90 ~~~~lq~a~l-n~d~~t~all~~~sl 114 (1117)
T COG5108 90 AKELLQQARL-NGDSLTYALLCQASL 114 (1117)
T ss_pred HHHHHHHhhc-CCcchHHHHHHHhhc
Confidence 3333333321 245666666655433
No 481
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.28 E-value=4.6e+02 Score=23.87 Aligned_cols=179 Identities=9% Similarity=0.013 Sum_probs=77.9
Q ss_pred cHHHHHHHHHhcCCcchHHHHHHHHHHhC--CCCchhhHHHHHHHHHhcCChhHHHHHhccCCC-CCc-----hhHHHHH
Q 042593 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVG--FQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE-RNL-----VTWNVII 97 (352)
Q Consensus 26 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~-----~~~~~~i 97 (352)
.+.-+...|...|+++.|++.|...+..- -+.....|-.+|..-.-.|++........+..+ |+. ...++-+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 34455555666666666666666533221 112233444455555555555555444444332 110 0000001
Q ss_pred HHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhcc-----CCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCC-CCCc
Q 042593 98 TGLVKWTGIIDGYSRMNRSNEALALFRRMAACE-----YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGF-NAFD 171 (352)
Q Consensus 98 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~ 171 (352)
.+ +..+.... .+++..|.+.|-...... -+.|...+....+.+++--++-+.-..+.....-..+ .. .
T Consensus 232 ~C---~agLa~L~--lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel-~ 305 (466)
T KOG0686|consen 232 KC---AAGLANLL--LKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLEL-E 305 (466)
T ss_pred HH---HHHHHHHH--HHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhc-C
Confidence 00 22222222 225555555554442211 1345444444555555544433332222221111111 11 3
Q ss_pred hhhHHHHHHHHHhhCChHHHHHHHHHhccC-------CCCHhhHHHHH
Q 042593 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVD-------RKNLVSWTTII 212 (352)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~li 212 (352)
+..+..+-..|. +++..+++++++++.. .|.+.+.-.+|
T Consensus 306 Pqlr~il~~fy~--sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~I 351 (466)
T KOG0686|consen 306 PQLREILFKFYS--SKYASCLELLREIKPRLLLDMYLAPHVDNLYSLI 351 (466)
T ss_pred hHHHHHHHHHhh--hhHHHHHHHHHHhccceeechhcchhHHHHHHHH
Confidence 445544444443 4678888888887654 45555444444
No 482
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=28.12 E-value=5.5e+02 Score=24.76 Aligned_cols=202 Identities=7% Similarity=0.007 Sum_probs=0.0
Q ss_pred cHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC-----CCchhHHHHHHHH
Q 042593 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE-----RNLVTWNVIITGL 100 (352)
Q Consensus 26 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~i~~~ 100 (352)
....++.++...|-...+.-+.+.+....+.+....--.+.-......--++.++.+.+|.+ ++.....+.+-+
T Consensus 380 ~r~~~lDal~~aGT~~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~- 458 (618)
T PF01347_consen 380 ARKIFLDALPQAGTNPAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLS- 458 (618)
T ss_dssp HHHHHHHHHHHH-SHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHH-
Q ss_pred HhHHHHHHHHHhc------------CCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCC
Q 042593 101 VKWTGIIDGYSRM------------NRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN 168 (352)
Q Consensus 101 ~~~~~li~~~~~~------------~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 168 (352)
+..+++-+|.. .-.++....+........-.-|...-...|+|+...|....+..+...+.... .
T Consensus 459 --~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~-~ 535 (618)
T PF01347_consen 459 --LGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHPESIPVLLPYIEGKE-E 535 (618)
T ss_dssp --HHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-GGGHHHHHTTSTTSS--
T ss_pred --HHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCchhhHHHHhHhhhcc-c
Q ss_pred CCchhhHHHHHHHHH--hhCChHHHHHHHHHhccC------------------CCCHhhHHHHHHHHHcCCCHHHHHHHH
Q 042593 169 AFDIHVSNCLIDTYA--KCGCIFSASKLFEDTSVD------------------RKNLVSWTTIISGFAMHGMGKEAVENF 228 (352)
Q Consensus 169 ~~~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~------------------~~~~~~~~~li~~~~~~~~~~~a~~~~ 228 (352)
. +...-...|.++. .....+.+.+++-.+-.. .|+...+..+....-...+.+=+--++
T Consensus 536 ~-~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~P~~~~l~~i~~~l~~E~~~QV~sfv~ 614 (618)
T PF01347_consen 536 V-PHFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRIAAYLILMRCNPSPSVLQRIAQSLWNEPSNQVASFVY 614 (618)
T ss_dssp S--HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHT---HHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred c-chHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHHhhCchHHHHHHHH
Q ss_pred HHHH
Q 042593 229 ERMQ 232 (352)
Q Consensus 229 ~~m~ 232 (352)
..++
T Consensus 615 S~Lk 618 (618)
T PF01347_consen 615 SHLK 618 (618)
T ss_dssp HHHH
T ss_pred HhcC
No 483
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=27.33 E-value=1.7e+02 Score=26.89 Aligned_cols=103 Identities=12% Similarity=-0.108 Sum_probs=64.5
Q ss_pred HHHHhcCCHHHHHHHHHHhHhccCCCCChhh-HHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhC
Q 042593 108 DGYSRMNRSNEALALFRRMAACEYTEPSEIT-ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG 186 (352)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 186 (352)
+.+...++++.|..++.+... ..||-.. |..--.++.+.+++..|..=.....+.. |.....|-.-..++.+.+
T Consensus 12 n~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 455677889999999998844 4465443 3333367778888887776555555543 313334434444555666
Q ss_pred ChHHHHHHHHHhccCCCCHhhHHHHHHHH
Q 042593 187 CIFSASKLFEDTSVDRKNLVSWTTIISGF 215 (352)
Q Consensus 187 ~~~~a~~~~~~~~~~~~~~~~~~~li~~~ 215 (352)
+..+|...|+......|+-.-....+.-|
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 77778877777766667665555555443
No 484
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=26.96 E-value=4.9e+02 Score=23.94 Aligned_cols=87 Identities=10% Similarity=0.078 Sum_probs=59.5
Q ss_pred hccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHH---HH-----HHhhCChHHHHHHHHHhc
Q 042593 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI---DT-----YAKCGCIFSASKLFEDTS 199 (352)
Q Consensus 128 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li---~~-----~~~~g~~~~a~~~~~~~~ 199 (352)
....+.||.++.+-+...++..-..+-...+|+...+.+-+ -...+-++| ++ -.++..-+++.++++.|.
T Consensus 175 dtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDP--F~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp 252 (669)
T KOG3636|consen 175 DTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADP--FLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMP 252 (669)
T ss_pred hccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCc--eehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCc
Confidence 44568899999988888888888888899999988877633 222232222 21 124556789999999987
Q ss_pred cC--CCCHhhHHHHHHHHH
Q 042593 200 VD--RKNLVSWTTIISGFA 216 (352)
Q Consensus 200 ~~--~~~~~~~~~li~~~~ 216 (352)
.. ..|+.-+-+|...|+
T Consensus 253 ~~L~~eDvpDffsLAqyY~ 271 (669)
T KOG3636|consen 253 AQLSVEDVPDFFSLAQYYS 271 (669)
T ss_pred hhcccccchhHHHHHHHHh
Confidence 65 345555666666655
No 485
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=26.84 E-value=6.8e+02 Score=25.37 Aligned_cols=112 Identities=12% Similarity=-0.016 Sum_probs=50.0
Q ss_pred HHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh--hHHHHHHH
Q 042593 68 MYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI--TILAVLPA 145 (352)
Q Consensus 68 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--t~~~ll~~ 145 (352)
..+..|+.+-...+++.=..+|..... -...+...+..|..+-+.-+++ .|..++.. .-++-+..
T Consensus 531 ~Aa~~g~~~~l~~Ll~~G~d~n~~d~~--------G~TpLh~Aa~~g~~~~v~~Ll~-----~gadin~~d~~G~TpL~~ 597 (823)
T PLN03192 531 TVASTGNAALLEELLKAKLDPDIGDSK--------GRTPLHIAASKGYEDCVLVLLK-----HACNVHIRDANGNTALWN 597 (823)
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCC--------CCCHHHHHHHcChHHHHHHHHh-----cCCCCCCcCCCCCCHHHH
Confidence 344567777777766554333222110 1122333445565544433322 22223221 11122333
Q ss_pred HHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHH
Q 042593 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197 (352)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 197 (352)
.+..|+.+-+.-+++ .+... +...-...+...+..|+.+-+..+++.
T Consensus 598 A~~~g~~~iv~~L~~----~~~~~-~~~~~~~~L~~Aa~~g~~~~v~~Ll~~ 644 (823)
T PLN03192 598 AISAKHHKIFRILYH----FASIS-DPHAAGDLLCTAAKRNDLTAMKELLKQ 644 (823)
T ss_pred HHHhCCHHHHHHHHh----cCccc-CcccCchHHHHHHHhCCHHHHHHHHHC
Confidence 334455544443332 22222 222233456666777777777777654
No 486
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=26.48 E-value=3.7e+02 Score=26.24 Aligned_cols=46 Identities=13% Similarity=0.054 Sum_probs=23.7
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhcC--CCCCchhhHHHHHHHHHhhCC
Q 042593 141 AVLPAIWKNGEVRNCQLIHGYGEKRG--FNAFDIHVSNCLIDTYAKCGC 187 (352)
Q Consensus 141 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~ 187 (352)
+++.+|...|++..+.++++.+...+ -.. -...+|..|+-..+.|.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~-~l~~~nlyi~~~~q~~s 80 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKI-LLPMINLYIREIIQRGS 80 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCee-ehhHHHHHHHHHHhcCC
Confidence 55566666666666665555554332 111 23445555555555554
No 487
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=26.45 E-value=4.4e+02 Score=23.01 Aligned_cols=21 Identities=10% Similarity=0.063 Sum_probs=15.3
Q ss_pred chhhHHHHHHHHHhhCChHHH
Q 042593 171 DIHVSNCLIDTYAKCGCIFSA 191 (352)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~a 191 (352)
....|..|+.+++..|+.+-.
T Consensus 320 hlK~yaPLL~af~s~g~sEL~ 340 (412)
T KOG2297|consen 320 HLKQYAPLLAAFCSQGQSELE 340 (412)
T ss_pred HHHhhhHHHHHHhcCChHHHH
Confidence 345577888888888876654
No 488
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=26.23 E-value=4.4e+02 Score=22.98 Aligned_cols=139 Identities=13% Similarity=0.067 Sum_probs=90.2
Q ss_pred HHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhh---CChHHHH
Q 042593 116 SNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC---GCIFSAS 192 (352)
Q Consensus 116 ~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~ 192 (352)
.+.-+.++++..+. + +-+.......+..+.+.-+.+...+-++.+...... +...|...|+..... -.++.+.
T Consensus 47 ~E~klsilerAL~~-n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~--~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKH-N-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG--SPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC--ChHHHHHHHHHHHHHhccCcHHHHH
Confidence 45667788887444 2 234557778888888888889989999999887544 778888888776652 3566777
Q ss_pred HHHHHhccC------C------C--C-----HhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCCcchhh-hHhHHHH
Q 042593 193 KLFEDTSVD------R------K--N-----LVSWTTIISGFAMHGMGKEAVENFERMQKVGL-KPNRSWRI-GEEGLKF 251 (352)
Q Consensus 193 ~~~~~~~~~------~------~--~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~-~~~a~~~ 251 (352)
++|.+.... . + + +..+..+..-+...|..+.|..+++-+.+.++ .|....-. ..+..+.
T Consensus 123 ~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~~~~~~~ 202 (321)
T PF08424_consen 123 DVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESLSSSSFSERLES 202 (321)
T ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccccccccHHHHHHH
Confidence 776654321 1 1 1 12233444456788999999999999998775 44433322 2244444
Q ss_pred HHHHHHh
Q 042593 252 FDKMVEE 258 (352)
Q Consensus 252 ~~~m~~~ 258 (352)
|+..-+.
T Consensus 203 fe~FWeS 209 (321)
T PF08424_consen 203 FEEFWES 209 (321)
T ss_pred HHHHhCc
Confidence 4444443
No 489
>PRK09462 fur ferric uptake regulator; Provisional
Probab=26.02 E-value=2.9e+02 Score=20.76 Aligned_cols=58 Identities=5% Similarity=-0.095 Sum_probs=40.4
Q ss_pred CCCCCCCCCcccHHHHHHHHHhc-CCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChh
Q 042593 15 HSPLPPLFDSFTYSFLIRTCVTL-SYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76 (352)
Q Consensus 15 ~g~~P~~~~~~~~~~ll~~~~~~-g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 76 (352)
.|+++ +.. =..++..+... +..-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 11 ~glr~---T~q-R~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli~ 69 (148)
T PRK09462 11 AGLKV---TLP-RLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (148)
T ss_pred cCCCC---CHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 56665 443 44555666654 467789999999999886667776555677888887653
No 490
>PF13934 ELYS: Nuclear pore complex assembly
Probab=25.95 E-value=3.7e+02 Score=22.05 Aligned_cols=71 Identities=8% Similarity=0.000 Sum_probs=34.1
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHH
Q 042593 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFA 216 (352)
Q Consensus 141 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~ 216 (352)
.++.++...|+.+.|..+++.. +....+...-..++.+ ..++.+.+|..+-+...... ....+..++..+.
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~~---~p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~-~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRAV---GPPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDEL-RRRLFEQLLEHCL 183 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHhc---CCCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhh-hHHHHHHHHHHHH
Confidence 3555555566666666666543 2222122223333333 45566666666666553211 1334555555544
No 491
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=25.83 E-value=79 Score=25.64 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=48.1
Q ss_pred CcccHHHHHHHHHhcCCc---------chHHHHHHHHHHhCCCC-chhhHHHHHHHHHhcCChhHHHHHhccCC
Q 042593 23 DSFTYSFLIRTCVTLSYP---------NLGTQLHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSSKLFDELP 86 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~---------~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 86 (352)
...-|..+..+|++.|-+ +...++++...+.|++. =++.|+.+|+--.-.-++++..+++..++
T Consensus 162 ~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 162 HLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred cHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHhh
Confidence 345688899999988743 45677788888888753 46788889876666667888888887765
No 492
>COG1775 HgdB Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism]
Probab=25.67 E-value=3.1e+02 Score=24.42 Aligned_cols=26 Identities=15% Similarity=0.060 Sum_probs=11.7
Q ss_pred hHHHHHHHHHhhCChHHHHHHHHHhc
Q 042593 174 VSNCLIDTYAKCGCIFSASKLFEDTS 199 (352)
Q Consensus 174 ~~~~li~~~~~~g~~~~a~~~~~~~~ 199 (352)
+.+.|-++..+.++..+|..=+-++.
T Consensus 161 T~e~L~da~~r~N~~rea~~k~~kL~ 186 (379)
T COG1775 161 TEEKLRDAIARYNRLREALAKLYKLA 186 (379)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444444444444444444444443
No 493
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=25.66 E-value=1.9e+02 Score=21.11 Aligned_cols=58 Identities=19% Similarity=0.178 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhHhccCCCC-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHH
Q 042593 116 SNEALALFRRMAACEYTEP-SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSN 176 (352)
Q Consensus 116 ~~~a~~~~~~m~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 176 (352)
++-+.+++++.....|+.- +..+-..+++...+.|-++.....++.+..++. +.++|+
T Consensus 38 ~ELaWK~lK~~L~~~G~~~~~~~spr~~ir~A~~~glI~d~~~W~~ml~~RN~---tsHtYd 96 (123)
T TIGR01987 38 FELAWKLMKRYLAQEGINDIGAYSPKDVLKEAFRAGLIGDESLWIAMLDDRNI---TSHTYD 96 (123)
T ss_pred HHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHcCCcCCHHHHHHHHHHhCc---ccccCC
Confidence 4455566666545555532 244566677777777777666555555555543 445553
No 494
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=25.65 E-value=6.2e+02 Score=24.51 Aligned_cols=89 Identities=11% Similarity=0.002 Sum_probs=50.0
Q ss_pred HhcCCHHHHHHHHHHhHhccCCCCC-----hhhHHHHHHH--HHhCCChhhHHHHHH--------HHHhcCCCCCchhhH
Q 042593 111 SRMNRSNEALALFRRMAACEYTEPS-----EITILAVLPA--IWKNGEVRNCQLIHG--------YGEKRGFNAFDIHVS 175 (352)
Q Consensus 111 ~~~~~~~~a~~~~~~m~~~~~~~p~-----~~t~~~ll~~--~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~ 175 (352)
+-.+++..|...+++|.......|+ ...+...+.+ +-..|+.+.|...|. .....+... +..++
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~-El~il 450 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFR-ELYIL 450 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcch-HHHHH
Confidence 4467899999999998443332232 2234444444 335699999999997 444444443 44444
Q ss_pred HHH--HHHHHh--hCChHH--HHHHHHHhcc
Q 042593 176 NCL--IDTYAK--CGCIFS--ASKLFEDTSV 200 (352)
Q Consensus 176 ~~l--i~~~~~--~g~~~~--a~~~~~~~~~ 200 (352)
..+ +-.+.. ..+.++ +.++++.+..
T Consensus 451 a~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p 481 (608)
T PF10345_consen 451 AALNLAIILQYESSRDDSESELNELLEQIEP 481 (608)
T ss_pred HHHHHHHHhHhhcccchhhhHHHHHHHhcCc
Confidence 332 112222 222333 7788887754
No 495
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=25.30 E-value=2.8e+02 Score=20.37 Aligned_cols=45 Identities=29% Similarity=0.328 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhc
Q 042593 222 KEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290 (352)
Q Consensus 222 ~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 290 (352)
++..++|..|.+.|+-. --...|......+-..|++.+|.++|+.
T Consensus 80 ~dp~~if~~L~~~~IG~------------------------~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGT------------------------KLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcch------------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 34566777777775432 1345667777778889999999988863
No 496
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=24.89 E-value=5e+02 Score=23.11 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=15.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhccCCCCChh
Q 042593 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137 (352)
Q Consensus 106 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 137 (352)
++..|...|-...|..+|..+ .-+.++-|..
T Consensus 223 LvrlY~~LG~~~~A~~~~~~L-~iK~IQ~DTL 253 (365)
T PF09797_consen 223 LVRLYSLLGAGSLALEHYESL-DIKNIQLDTL 253 (365)
T ss_pred HHHHHHHcCCHHHHHHHHHhc-ChHHHHHHHh
Confidence 445555555555555555555 4444444433
No 497
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.79 E-value=2.5e+02 Score=19.71 Aligned_cols=52 Identities=12% Similarity=-0.118 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhH
Q 042593 156 QLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSW 208 (352)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 208 (352)
++.+++....+... .+..-..|--.|++.|+-+.|.+-|+.=+...|...+|
T Consensus 57 e~~~ek~~ak~~~v-pPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 57 EKYLEKIGAKNGAV-PPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred HHHHHHHhhcCCCC-CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 34444444333322 22223344455666666666666666544344544444
No 498
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=24.59 E-value=1.7e+02 Score=18.96 Aligned_cols=40 Identities=10% Similarity=0.065 Sum_probs=28.9
Q ss_pred HHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcC
Q 042593 34 CVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG 73 (352)
Q Consensus 34 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 73 (352)
..-.|+.+.+.++++...+.|.+|.....+.+.-+..+-|
T Consensus 11 al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 11 ALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3456899999999999998888877666666666665543
No 499
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=24.55 E-value=2.9e+02 Score=25.60 Aligned_cols=108 Identities=12% Similarity=0.035 Sum_probs=60.5
Q ss_pred HHHhcCCcchHHHHHHHHHHhCC--CCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCc---hhHHHHHHHHHhHHHHH
Q 042593 33 TCVTLSYPNLGTQLHAVFSKVGF--QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL---VTWNVIITGLVKWTGII 107 (352)
Q Consensus 33 ~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~i~~~~~~~~li 107 (352)
+.+.+|.++- .+.+.+.|. .-+..|-+.=+.+.|-.|+++-...+.+.=-.|++ .- .+.|+
T Consensus 90 aAsaAGHl~v----Vk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhG----------hTcLm 155 (615)
T KOG0508|consen 90 AASAAGHLEV----VKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHG----------HTCLM 155 (615)
T ss_pred HHhccCcHHH----HHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCC----------CeeEE
Confidence 4445566544 444444443 33445555667788888999888888866544322 22 22222
Q ss_pred HHHHhcCCHHHHHHHHHHhHhccCCCCChhh--HHHHHHHHHhCCChhhHHHHHH
Q 042593 108 DGYSRMNRSNEALALFRRMAACEYTEPSEIT--ILAVLPAIWKNGEVRNCQLIHG 160 (352)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~ 160 (352)
-+ +-.|..+-|..+++ .|..++..+ =|+.+.-|+..|.++-..-++.
T Consensus 156 Ia-~ykGh~~I~qyLle-----~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~ 204 (615)
T KOG0508|consen 156 IA-CYKGHVDIAQYLLE-----QGADVNAKSYKGNTALHDCAESGSVDIVQLLLK 204 (615)
T ss_pred ee-eccCchHHHHHHHH-----hCCCcchhcccCchHHHhhhhcccHHHHHHHHh
Confidence 22 23566665544443 335565544 4677888888888765444443
No 500
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=24.23 E-value=6.3e+02 Score=24.07 Aligned_cols=111 Identities=15% Similarity=0.135 Sum_probs=80.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCC-CCchhhHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN-AFDIHVSNCLIDT 181 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~ 181 (352)
+...+.+++..+...+++.+-++. . --...|..+...+...+....+...+-+-.+.+-. ..+......+.+.
T Consensus 306 ~~r~v~~l~~a~~~~e~i~~~~~e-a-----~~~~~yl~~v~llle~~~~~~a~~wl~~~~r~a~~q~~t~q~~q~l~el 379 (587)
T COG4715 306 VDREVPALASAGLQHEAIRLCERE-A-----EGPGSYLDLVELLLESGEPSKAELWLARGIRTAREQLQTTQLPQTLAEL 379 (587)
T ss_pred HHHhhhhhccchhhHHHHHHHHHH-h-----cCcccHHHHHHHHHhcCChhHHHHHHHHHHhhhhHhhhhhhhHHHHHHH
Confidence 778888999999999999988877 3 12235777888888888887777655544433221 1155667789999
Q ss_pred HHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCC
Q 042593 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHG 219 (352)
Q Consensus 182 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~ 219 (352)
+...|++-.|.++-.......|+...|--|-.+-...|
T Consensus 380 ~~~~g~~~~a~~Laq~~F~r~p~~~sy~~lw~~~~~~g 417 (587)
T COG4715 380 KEEEGRLGFAAELAQEAFFRTPNGRSYLGLWLAAVYAG 417 (587)
T ss_pred HHhhcchHHHHHHHHHHccCCCCccchhhHHHHHHHhh
Confidence 99999999999999887767888877776654433333
Done!