Query 042593
Match_columns 352
No_of_seqs 336 out of 1702
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 13:13:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042593.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042593hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 2.5E-32 8.5E-37 248.9 17.7 196 3-218 12-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 4E-32 1.4E-36 247.5 18.8 214 76-322 7-234 (501)
3 2xpi_A Anaphase-promoting comp 99.9 3.4E-26 1.2E-30 214.7 23.9 299 2-328 105-505 (597)
4 2xpi_A Anaphase-promoting comp 99.9 3.1E-26 1.1E-30 215.0 22.0 294 23-330 199-582 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 2E-22 6.8E-27 179.1 24.3 293 23-334 66-375 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 4.5E-21 1.6E-25 170.3 22.1 288 23-330 32-337 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 6.5E-21 2.2E-25 172.5 21.6 288 23-331 25-362 (450)
8 2y4t_A DNAJ homolog subfamily 99.8 4.7E-18 1.6E-22 153.6 26.2 276 23-307 59-372 (450)
9 3hym_B Cell division cycle pro 99.8 2.8E-18 9.5E-23 148.3 23.4 269 23-308 21-314 (330)
10 1fch_A Peroxisomal targeting s 99.8 8.7E-19 3E-23 154.1 20.2 267 23-329 63-361 (368)
11 3ieg_A DNAJ homolog subfamily 99.8 2.2E-18 7.5E-23 150.6 22.2 288 23-331 2-339 (359)
12 4eqf_A PEX5-related protein; a 99.8 6.1E-19 2.1E-23 155.2 15.9 266 23-325 64-354 (365)
13 3cv0_A Peroxisome targeting si 99.8 1.5E-18 5E-23 149.9 18.0 267 23-331 20-319 (327)
14 2gw1_A Mitochondrial precursor 99.8 9.3E-18 3.2E-22 154.1 22.5 312 2-330 27-481 (514)
15 3spa_A Mtrpol, DNA-directed RN 99.8 9.7E-20 3.3E-24 171.8 5.8 149 59-219 127-286 (1134)
16 3hym_B Cell division cycle pro 99.8 2.3E-16 7.7E-21 136.3 26.4 240 23-282 55-322 (330)
17 2gw1_A Mitochondrial precursor 99.8 2E-17 6.8E-22 151.9 18.8 293 23-330 5-404 (514)
18 3spa_A Mtrpol, DNA-directed RN 99.8 7.1E-19 2.4E-23 166.0 8.9 97 137-234 128-230 (1134)
19 3ieg_A DNAJ homolog subfamily 99.8 9.1E-16 3.1E-20 133.9 26.6 281 23-312 36-354 (359)
20 3mkr_A Coatomer subunit epsilo 99.7 4.4E-17 1.5E-21 138.7 16.9 253 31-329 6-266 (291)
21 3fp2_A TPR repeat-containing p 99.7 9E-16 3.1E-20 141.8 23.1 300 23-330 58-494 (537)
22 3fp2_A TPR repeat-containing p 99.7 3.2E-16 1.1E-20 144.8 18.8 291 24-330 25-410 (537)
23 4eqf_A PEX5-related protein; a 99.7 5.6E-16 1.9E-20 136.2 16.6 253 23-292 98-354 (365)
24 1fch_A Peroxisomal targeting s 99.7 1.9E-15 6.3E-20 132.8 18.5 250 23-291 97-356 (368)
25 1b89_A Protein (clathrin heavy 99.7 5.1E-17 1.8E-21 142.4 6.5 235 23-325 31-270 (449)
26 3cv0_A Peroxisome targeting si 99.6 1.2E-14 4E-19 125.3 18.8 253 23-294 54-315 (327)
27 3mkr_A Coatomer subunit epsilo 99.6 6.9E-14 2.4E-18 118.9 21.8 194 23-233 64-263 (291)
28 3uq3_A Heat shock protein STI1 99.6 2.4E-14 8.2E-19 118.9 18.6 229 23-294 4-236 (258)
29 1b89_A Protein (clathrin heavy 99.6 1E-14 3.6E-19 127.9 16.4 261 23-321 60-349 (449)
30 2ho1_A Type 4 fimbrial biogene 99.6 1.7E-13 5.7E-18 113.7 21.5 197 24-234 37-238 (252)
31 2pl2_A Hypothetical conserved 99.6 3.7E-14 1.3E-18 115.3 16.0 193 23-232 4-212 (217)
32 2vq2_A PILW, putative fimbrial 99.6 1.4E-13 4.9E-18 111.7 19.5 198 23-234 7-211 (225)
33 2pl2_A Hypothetical conserved 99.6 9.7E-14 3.3E-18 112.8 17.3 199 56-292 2-212 (217)
34 2ho1_A Type 4 fimbrial biogene 99.6 2E-13 7E-18 113.2 18.9 203 59-299 37-243 (252)
35 3u4t_A TPR repeat-containing p 99.6 1.6E-13 5.5E-18 115.1 18.4 249 23-307 2-264 (272)
36 1xnf_A Lipoprotein NLPI; TPR, 99.6 3.2E-14 1.1E-18 119.5 13.9 247 34-321 15-269 (275)
37 3uq3_A Heat shock protein STI1 99.6 5.8E-14 2E-18 116.6 14.8 225 58-328 4-237 (258)
38 2vq2_A PILW, putative fimbrial 99.6 1.8E-13 6.2E-18 111.1 17.3 209 57-302 6-219 (225)
39 2q7f_A YRRB protein; TPR, prot 99.6 1.1E-13 3.7E-18 114.0 15.9 198 22-234 21-222 (243)
40 3u4t_A TPR repeat-containing p 99.6 2.5E-13 8.6E-18 113.9 18.0 241 58-337 2-260 (272)
41 2h6f_A Protein farnesyltransfe 99.6 1.9E-13 6.7E-18 120.3 17.8 249 24-311 97-366 (382)
42 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.3E-13 4.4E-18 115.8 15.8 221 22-288 41-269 (275)
43 2q7f_A YRRB protein; TPR, prot 99.5 1E-13 3.5E-18 114.2 13.3 210 57-303 21-232 (243)
44 3sf4_A G-protein-signaling mod 99.5 2.9E-13 1E-17 120.1 16.2 276 23-326 8-335 (406)
45 2ooe_A Cleavage stimulation fa 99.5 8.5E-12 2.9E-16 115.3 25.1 71 23-95 12-84 (530)
46 3ro2_A PINS homolog, G-protein 99.5 6E-14 2.1E-18 120.9 10.0 276 24-327 5-332 (338)
47 4a1s_A PINS, partner of inscut 99.5 1.1E-13 3.8E-18 123.3 10.3 278 24-328 48-373 (411)
48 4g1t_A Interferon-induced prot 99.5 4.1E-12 1.4E-16 115.3 20.3 290 23-328 50-402 (472)
49 1ouv_A Conserved hypothetical 99.5 3E-11 1E-15 101.4 23.9 222 23-294 5-251 (273)
50 1ouv_A Conserved hypothetical 99.4 2E-11 6.9E-16 102.5 21.4 225 58-330 5-254 (273)
51 3nf1_A KLC 1, kinesin light ch 99.4 1.5E-13 5.3E-18 117.3 8.1 245 57-326 25-306 (311)
52 2h6f_A Protein farnesyltransfe 99.4 2.4E-12 8.2E-17 113.3 15.4 227 59-324 97-344 (382)
53 4abn_A Tetratricopeptide repea 99.4 3.1E-12 1.1E-16 116.4 16.4 211 41-293 85-320 (474)
54 3nf1_A KLC 1, kinesin light ch 99.4 2.8E-12 9.7E-17 109.4 15.0 205 23-233 26-306 (311)
55 3vtx_A MAMA; tetratricopeptide 99.4 7.4E-12 2.5E-16 98.6 15.1 166 23-203 4-172 (184)
56 2ond_A Cleavage stimulation fa 99.4 6.9E-11 2.3E-15 101.3 21.7 214 41-294 33-270 (308)
57 2xm6_A Protein corresponding t 99.4 3E-10 1E-14 103.8 26.4 274 26-328 113-433 (490)
58 3vtx_A MAMA; tetratricopeptide 99.4 5.9E-12 2E-16 99.2 13.0 161 103-294 8-170 (184)
59 2xm6_A Protein corresponding t 99.4 2.1E-10 7.1E-15 104.9 23.9 190 23-234 38-252 (490)
60 3sf4_A G-protein-signaling mod 99.3 4.3E-12 1.5E-16 112.6 10.3 274 24-324 47-373 (406)
61 4abn_A Tetratricopeptide repea 99.3 1.2E-11 4.1E-16 112.5 12.7 196 23-231 101-318 (474)
62 3as5_A MAMA; tetratricopeptide 99.3 2.8E-10 9.4E-15 89.0 19.0 165 59-234 8-173 (186)
63 2ond_A Cleavage stimulation fa 99.3 2.8E-10 9.7E-15 97.4 20.1 198 23-234 49-270 (308)
64 1xi4_A Clathrin heavy chain; a 99.3 4.2E-10 1.4E-14 110.4 23.2 255 23-312 1104-1415(1630)
65 3as5_A MAMA; tetratricopeptide 99.3 1.1E-10 3.9E-15 91.2 15.0 162 103-294 11-173 (186)
66 3ulq_A Response regulator aspa 99.3 2.5E-10 8.4E-15 100.9 18.6 254 45-325 85-366 (383)
67 3ro2_A PINS homolog, G-protein 99.3 2.1E-11 7E-16 104.9 11.3 244 24-293 43-331 (338)
68 4a1s_A PINS, partner of inscut 99.3 1.3E-11 4.3E-16 110.0 9.8 244 25-294 87-372 (411)
69 1xi4_A Clathrin heavy chain; a 99.3 7.9E-10 2.7E-14 108.5 22.3 169 27-230 1052-1220(1630)
70 3edt_B KLC 2, kinesin light ch 99.3 1.4E-10 4.7E-15 97.3 15.1 194 34-234 11-281 (283)
71 4g1t_A Interferon-induced prot 99.3 6.2E-10 2.1E-14 100.9 20.5 280 24-330 136-462 (472)
72 4gyw_A UDP-N-acetylglucosamine 99.2 1.3E-10 4.3E-15 110.4 14.8 160 59-233 9-173 (723)
73 3ulq_A Response regulator aspa 99.2 4.7E-10 1.6E-14 99.0 17.5 231 30-292 109-366 (383)
74 3q15_A PSP28, response regulat 99.2 4.5E-10 1.6E-14 99.0 17.1 255 45-326 83-364 (378)
75 4gyw_A UDP-N-acetylglucosamine 99.2 1.9E-10 6.6E-15 109.2 14.4 162 23-200 8-173 (723)
76 1hz4_A MALT regulatory protein 99.2 8.6E-10 2.9E-14 96.9 17.6 272 27-326 17-321 (373)
77 3edt_B KLC 2, kinesin light ch 99.2 3.2E-10 1.1E-14 95.0 12.9 158 70-234 12-198 (283)
78 4i17_A Hypothetical protein; T 99.1 1.2E-09 4.2E-14 88.9 15.0 195 23-235 6-210 (228)
79 1qqe_A Vesicular transport pro 99.1 2.6E-09 9E-14 90.6 17.2 206 25-233 38-268 (292)
80 2ooe_A Cleavage stimulation fa 99.1 7.5E-09 2.6E-13 95.5 21.6 213 42-294 256-492 (530)
81 3mv2_B Coatomer subunit epsilo 99.1 9.6E-09 3.3E-13 86.4 19.4 198 43-258 85-305 (310)
82 4i17_A Hypothetical protein; T 99.1 1.7E-09 5.7E-14 88.1 14.2 161 134-314 5-169 (228)
83 3q15_A PSP28, response regulat 99.1 6.7E-09 2.3E-13 91.5 18.1 230 30-292 107-363 (378)
84 2fo7_A Synthetic consensus TPR 99.1 6.7E-09 2.3E-13 76.3 15.1 128 103-234 4-132 (136)
85 1hz4_A MALT regulatory protein 99.0 3.5E-08 1.2E-12 86.5 20.5 242 26-293 55-321 (373)
86 1qqe_A Vesicular transport pro 99.0 2.4E-08 8.3E-13 84.6 18.5 214 39-294 32-269 (292)
87 2pzi_A Probable serine/threoni 99.0 3.7E-09 1.3E-13 100.5 14.4 169 35-220 402-583 (681)
88 3e4b_A ALGK; tetratricopeptide 99.0 4.1E-09 1.4E-13 95.2 13.1 268 30-324 9-348 (452)
89 2fo7_A Synthetic consensus TPR 99.0 1.3E-08 4.5E-13 74.7 13.7 128 138-293 3-131 (136)
90 3qky_A Outer membrane assembly 99.0 3.8E-08 1.3E-12 81.8 17.8 166 60-234 16-224 (261)
91 3qky_A Outer membrane assembly 99.0 9E-09 3.1E-13 85.6 13.7 172 23-205 14-228 (261)
92 2r5s_A Uncharacterized protein 99.0 1.7E-08 5.8E-13 78.6 14.1 157 62-233 9-172 (176)
93 3mv2_B Coatomer subunit epsilo 98.9 1.7E-07 5.7E-12 78.9 19.1 245 31-329 20-284 (310)
94 2yhc_A BAMD, UPF0169 lipoprote 98.9 9.7E-08 3.3E-12 77.5 17.3 186 23-237 3-216 (225)
95 2r5s_A Uncharacterized protein 98.9 3.6E-08 1.2E-12 76.8 14.1 162 24-198 6-170 (176)
96 3qou_A Protein YBBN; thioredox 98.9 8.3E-08 2.8E-12 81.1 16.5 163 56-233 114-283 (287)
97 3qou_A Protein YBBN; thioredox 98.9 3.2E-08 1.1E-12 83.7 13.8 162 25-198 118-281 (287)
98 2pzi_A Probable serine/threoni 98.9 1.8E-08 6.3E-13 95.7 13.4 174 111-313 402-583 (681)
99 3urz_A Uncharacterized protein 98.9 5.1E-08 1.7E-12 78.2 14.0 178 26-233 6-185 (208)
100 3urz_A Uncharacterized protein 98.8 1.1E-07 3.8E-12 76.2 15.3 176 61-272 6-197 (208)
101 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.8E-07 6E-12 76.0 16.3 169 103-294 7-213 (225)
102 3e4b_A ALGK; tetratricopeptide 98.8 2.2E-07 7.6E-12 83.8 18.3 211 103-325 144-385 (452)
103 3u3w_A Transcriptional activat 98.8 5.1E-07 1.7E-11 76.4 19.2 213 47-292 34-264 (293)
104 1hh8_A P67PHOX, NCF-2, neutrop 98.8 4.8E-07 1.7E-11 72.3 17.4 125 103-234 9-150 (213)
105 2vsy_A XCC0866; transferase, g 98.8 1.7E-07 5.8E-12 87.2 16.6 155 72-237 2-160 (568)
106 2vsy_A XCC0866; transferase, g 98.8 8.3E-08 2.9E-12 89.3 14.1 156 37-204 2-160 (568)
107 1hh8_A P67PHOX, NCF-2, neutrop 98.8 4.6E-07 1.6E-11 72.5 16.7 133 61-205 8-154 (213)
108 2ifu_A Gamma-SNAP; membrane fu 98.8 1.1E-07 3.6E-12 81.2 13.6 189 37-232 4-222 (307)
109 3rjv_A Putative SEL1 repeat pr 98.8 3.7E-07 1.3E-11 73.4 15.8 178 41-236 3-199 (212)
110 4ga2_A E3 SUMO-protein ligase 98.8 4E-08 1.4E-12 74.3 9.6 144 65-220 3-149 (150)
111 3dra_A Protein farnesyltransfe 98.8 7.4E-07 2.5E-11 75.5 18.1 236 35-305 43-300 (306)
112 4ga2_A E3 SUMO-protein ligase 98.7 2.1E-08 7.2E-13 75.9 6.2 121 108-233 5-128 (150)
113 3u3w_A Transcriptional activat 98.7 3.9E-06 1.3E-10 70.9 20.8 169 62-233 78-265 (293)
114 2ifu_A Gamma-SNAP; membrane fu 98.7 4.3E-07 1.5E-11 77.4 14.8 195 26-226 38-253 (307)
115 2qfc_A PLCR protein; TPR, HTH, 98.7 8E-07 2.7E-11 75.2 15.4 172 59-233 75-265 (293)
116 4e6h_A MRNA 3'-END-processing 98.6 2.2E-06 7.6E-11 80.6 18.4 204 23-235 342-571 (679)
117 2qfc_A PLCR protein; TPR, HTH, 98.6 2.6E-06 9E-11 72.0 16.4 168 103-291 78-263 (293)
118 2c2l_A CHIP, carboxy terminus 98.5 1E-06 3.4E-11 74.1 12.9 94 138-233 6-100 (281)
119 2c2l_A CHIP, carboxy terminus 98.5 5.1E-07 1.7E-11 76.0 10.7 195 23-234 3-199 (281)
120 3gw4_A Uncharacterized protein 98.5 4.1E-06 1.4E-10 66.1 15.3 159 34-198 2-173 (203)
121 3dra_A Protein farnesyltransfe 98.5 1.5E-05 5E-10 67.5 19.2 198 24-233 67-286 (306)
122 1a17_A Serine/threonine protei 98.5 2.9E-06 9.9E-11 64.6 13.7 127 103-233 16-145 (166)
123 3gw4_A Uncharacterized protein 98.5 1.5E-06 5.3E-11 68.6 12.5 154 70-233 3-175 (203)
124 1na0_A Designed protein CTPR3; 98.5 3.9E-06 1.3E-10 60.2 13.5 96 137-234 10-106 (125)
125 1p5q_A FKBP52, FK506-binding p 98.5 4.3E-07 1.5E-11 78.5 9.6 129 103-233 150-293 (336)
126 3rjv_A Putative SEL1 repeat pr 98.5 7.1E-06 2.4E-10 65.7 16.2 157 23-199 17-195 (212)
127 3gyz_A Chaperone protein IPGC; 98.5 1.7E-06 5.9E-11 65.2 11.7 99 103-205 39-137 (151)
128 4gco_A Protein STI-1; structur 98.5 6.2E-07 2.1E-11 65.5 9.0 94 138-233 15-109 (126)
129 3q7a_A Farnesyltransferase alp 98.5 1.2E-05 4E-10 69.0 18.0 231 32-294 62-331 (349)
130 4e6h_A MRNA 3'-END-processing 98.5 4.5E-06 1.6E-10 78.5 16.4 230 43-308 328-584 (679)
131 2vyi_A SGTA protein; chaperone 98.5 1.3E-06 4.4E-11 63.4 10.3 95 137-233 13-108 (131)
132 2lni_A Stress-induced-phosphop 98.5 1.6E-06 5.3E-11 63.3 10.8 95 137-233 17-112 (133)
133 2lni_A Stress-induced-phosphop 98.5 3.6E-06 1.2E-10 61.3 12.5 113 103-219 19-132 (133)
134 1na0_A Designed protein CTPR3; 98.5 4.6E-06 1.6E-10 59.8 12.9 111 103-217 12-123 (125)
135 1a17_A Serine/threonine protei 98.5 9.5E-07 3.3E-11 67.3 9.7 123 61-197 15-142 (166)
136 2fbn_A 70 kDa peptidylprolyl i 98.4 6.3E-07 2.1E-11 71.0 8.5 162 65-235 10-187 (198)
137 4f3v_A ESX-1 secretion system 98.4 1.3E-06 4.3E-11 72.6 10.4 190 36-235 18-238 (282)
138 2vyi_A SGTA protein; chaperone 98.4 4.9E-06 1.7E-10 60.3 12.6 115 103-221 15-130 (131)
139 2e2e_A Formate-dependent nitri 98.4 2.3E-06 7.9E-11 66.3 11.1 118 112-233 22-143 (177)
140 3gyz_A Chaperone protein IPGC; 98.4 2.1E-06 7.1E-11 64.8 10.1 102 132-235 31-134 (151)
141 2kck_A TPR repeat; tetratricop 98.4 5.5E-06 1.9E-10 58.2 11.9 99 135-235 5-107 (112)
142 4gco_A Protein STI-1; structur 98.4 6.7E-06 2.3E-10 59.9 12.5 106 103-212 16-122 (126)
143 4b4t_Q 26S proteasome regulato 98.4 1.3E-06 4.5E-11 77.9 10.4 202 108-329 12-247 (434)
144 2xcb_A PCRH, regulatory protei 98.4 6.1E-06 2.1E-10 61.4 11.9 96 137-234 19-115 (142)
145 2vgx_A Chaperone SYCD; alterna 98.4 5.5E-06 1.9E-10 62.3 11.4 96 137-234 22-118 (148)
146 2vgx_A Chaperone SYCD; alterna 98.3 3E-06 1E-10 63.7 9.8 98 103-204 24-121 (148)
147 2e2e_A Formate-dependent nitri 98.3 2.1E-06 7.2E-11 66.5 8.7 122 71-206 22-149 (177)
148 2fbn_A 70 kDa peptidylprolyl i 98.3 5.6E-07 1.9E-11 71.3 5.3 154 145-326 13-184 (198)
149 4b4t_Q 26S proteasome regulato 98.3 3.6E-05 1.2E-09 68.5 16.8 197 31-233 11-244 (434)
150 1p5q_A FKBP52, FK506-binding p 98.3 7.6E-06 2.6E-10 70.6 11.9 129 136-291 147-291 (336)
151 2xcb_A PCRH, regulatory protei 98.3 1.3E-05 4.6E-10 59.5 11.7 113 80-203 5-117 (142)
152 3q49_B STIP1 homology and U bo 98.2 2E-05 6.8E-10 57.8 12.1 99 134-234 7-106 (137)
153 3sz7_A HSC70 cochaperone (SGT) 98.2 2.6E-05 8.8E-10 59.5 13.0 97 136-234 11-108 (164)
154 3upv_A Heat shock protein STI1 98.2 1.6E-05 5.4E-10 57.6 11.0 94 138-233 6-100 (126)
155 3q7a_A Farnesyltransferase alp 98.2 0.00017 5.8E-09 61.8 18.9 199 23-233 87-330 (349)
156 4gcn_A Protein STI-1; structur 98.2 1.3E-05 4.6E-10 58.4 10.6 110 23-139 7-119 (127)
157 2dba_A Smooth muscle cell asso 98.2 2E-05 6.7E-10 58.5 11.4 63 171-233 27-93 (148)
158 3sz7_A HSC70 cochaperone (SGT) 98.2 5.8E-06 2E-10 63.2 8.6 97 23-130 10-109 (164)
159 1elw_A TPR1-domain of HOP; HOP 98.2 5.2E-05 1.8E-09 53.5 13.2 93 139-233 7-100 (118)
160 2kck_A TPR repeat; tetratricop 98.2 8.5E-06 2.9E-10 57.2 8.8 95 23-128 5-105 (112)
161 4gcn_A Protein STI-1; structur 98.2 6.4E-06 2.2E-10 60.1 8.3 91 141-233 13-111 (127)
162 3upv_A Heat shock protein STI1 98.2 4.2E-05 1.4E-09 55.3 12.7 96 103-202 7-102 (126)
163 1elw_A TPR1-domain of HOP; HOP 98.2 7.2E-05 2.5E-09 52.8 13.8 105 103-211 7-112 (118)
164 1elr_A TPR2A-domain of HOP; HO 98.2 1.1E-05 3.8E-10 58.4 9.5 96 137-234 5-108 (131)
165 4f3v_A ESX-1 secretion system 98.2 5.1E-05 1.7E-09 62.9 14.2 138 63-210 106-246 (282)
166 3q49_B STIP1 homology and U bo 98.2 8.1E-06 2.8E-10 60.0 8.6 96 22-128 7-105 (137)
167 1elr_A TPR2A-domain of HOP; HO 98.1 1.2E-05 3.9E-10 58.3 8.9 110 103-214 7-121 (131)
168 3ro3_A PINS homolog, G-protein 98.1 2.3E-05 7.9E-10 58.9 10.4 132 60-197 10-154 (164)
169 1hxi_A PEX5, peroxisome target 98.1 3.2E-05 1.1E-09 55.8 10.5 90 106-199 23-112 (121)
170 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 9.2E-06 3.1E-10 73.3 9.3 129 103-233 271-414 (457)
171 2dba_A Smooth muscle cell asso 98.1 0.00011 3.7E-09 54.4 13.5 104 103-211 31-139 (148)
172 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 9.8E-07 3.4E-11 79.7 2.4 147 151-325 249-412 (457)
173 3ro3_A PINS homolog, G-protein 98.1 8.2E-06 2.8E-10 61.5 7.0 133 138-291 11-155 (164)
174 2uy1_A Cleavage stimulation fa 98.1 0.00041 1.4E-08 63.1 19.2 287 23-326 46-412 (493)
175 1hxi_A PEX5, peroxisome target 98.1 2.8E-05 9.5E-10 56.1 9.2 95 138-234 19-114 (121)
176 3dss_A Geranylgeranyl transfer 98.0 0.00026 8.7E-09 60.4 16.0 181 26-218 28-240 (331)
177 2xev_A YBGF; tetratricopeptide 98.0 7.6E-05 2.6E-09 54.0 11.1 89 143-233 9-104 (129)
178 2xev_A YBGF; tetratricopeptide 98.0 0.00011 3.8E-09 53.1 12.0 101 103-205 5-109 (129)
179 1wao_1 Serine/threonine protei 98.0 1.1E-05 3.8E-10 73.1 7.3 124 141-292 11-137 (477)
180 3k9i_A BH0479 protein; putativ 98.0 6.6E-06 2.3E-10 58.9 4.5 85 36-130 2-91 (117)
181 1wao_1 Serine/threonine protei 97.9 3.4E-05 1.2E-09 69.9 9.1 122 104-230 10-135 (477)
182 2if4_A ATFKBP42; FKBP-like, al 97.9 2.9E-05 1E-09 67.0 8.2 131 173-329 180-330 (338)
183 3n71_A Histone lysine methyltr 97.9 3.2E-05 1.1E-09 69.9 8.2 131 146-294 319-464 (490)
184 1ihg_A Cyclophilin 40; ppiase 97.9 3.6E-05 1.2E-09 67.3 7.9 125 173-323 224-366 (370)
185 2if4_A ATFKBP42; FKBP-like, al 97.8 6.4E-05 2.2E-09 64.9 9.3 127 103-234 182-328 (338)
186 3k9i_A BH0479 protein; putativ 97.8 3.6E-05 1.2E-09 55.0 6.3 85 149-233 3-89 (117)
187 1ihg_A Cyclophilin 40; ppiase 97.8 0.00019 6.6E-09 62.6 12.1 90 171-286 272-362 (370)
188 2l6j_A TPR repeat-containing p 97.8 8.3E-05 2.9E-09 52.1 7.9 96 204-325 3-105 (111)
189 3n71_A Histone lysine methyltr 97.8 0.00021 7.2E-09 64.6 12.2 128 107-234 316-464 (490)
190 3rkv_A Putative peptidylprolyl 97.7 0.00022 7.4E-09 54.1 9.9 64 171-234 62-126 (162)
191 3rkv_A Putative peptidylprolyl 97.7 0.00032 1.1E-08 53.1 10.8 101 103-205 14-130 (162)
192 1dce_A Protein (RAB geranylger 97.6 0.00096 3.3E-08 61.7 14.0 176 36-223 40-244 (567)
193 3dss_A Geranylgeranyl transfer 97.6 0.0022 7.5E-08 54.6 14.9 181 40-233 90-303 (331)
194 2l6j_A TPR repeat-containing p 97.6 0.00023 7.8E-09 49.7 7.2 65 137-203 5-69 (111)
195 1dce_A Protein (RAB geranylger 97.5 0.0016 5.5E-08 60.2 14.1 173 113-316 42-244 (567)
196 2uy1_A Cleavage stimulation fa 97.5 0.013 4.5E-07 53.1 19.9 192 23-233 212-412 (493)
197 2hr2_A Hypothetical protein; a 97.5 0.0016 5.6E-08 48.8 11.4 105 103-233 14-130 (159)
198 2hr2_A Hypothetical protein; a 97.5 0.001 3.6E-08 49.9 10.4 86 173-258 12-131 (159)
199 2kat_A Uncharacterized protein 97.5 0.00071 2.4E-08 47.8 8.9 77 155-233 4-81 (115)
200 2kat_A Uncharacterized protein 97.4 0.0002 6.9E-09 50.7 5.6 75 41-126 2-79 (115)
201 1na3_A Designed protein CTPR2; 97.3 0.0018 6.2E-08 43.1 8.3 76 138-215 11-87 (91)
202 1klx_A Cysteine rich protein B 97.2 0.0076 2.6E-07 44.2 12.3 113 113-236 8-128 (138)
203 3ma5_A Tetratricopeptide repea 97.2 0.0018 6.2E-08 44.5 7.7 61 136-198 7-67 (100)
204 1na3_A Designed protein CTPR2; 97.1 0.0077 2.7E-07 39.8 10.1 80 103-186 12-91 (91)
205 3ma5_A Tetratricopeptide repea 97.0 0.0017 5.8E-08 44.6 6.6 63 23-86 6-68 (100)
206 3qww_A SET and MYND domain-con 97.0 0.0011 3.8E-08 58.9 6.5 91 184-293 310-410 (433)
207 1zu2_A Mitochondrial import re 97.0 0.002 6.8E-08 48.2 6.7 44 190-233 64-119 (158)
208 3qww_A SET and MYND domain-con 96.9 0.0016 5.3E-08 58.0 7.0 86 148-233 310-410 (433)
209 1klx_A Cysteine rich protein B 96.9 0.0017 5.8E-08 47.7 6.2 112 37-167 8-128 (138)
210 3qwp_A SET and MYND domain-con 96.9 0.0021 7.1E-08 57.2 7.5 97 178-293 293-399 (429)
211 3mkq_A Coatomer beta'-subunit; 96.9 0.024 8.1E-07 54.7 15.6 129 67-234 607-736 (814)
212 3qwp_A SET and MYND domain-con 96.9 0.0042 1.5E-07 55.2 9.4 93 141-233 292-399 (429)
213 1zu2_A Mitochondrial import re 96.9 0.0027 9.3E-08 47.5 6.7 114 111-234 13-147 (158)
214 3mkq_A Coatomer beta'-subunit; 96.7 0.053 1.8E-06 52.2 16.2 157 32-233 607-764 (814)
215 3mkq_B Coatomer subunit alpha; 96.5 0.17 5.7E-06 38.4 15.1 24 103-126 37-60 (177)
216 3ly7_A Transcriptional activat 96.4 0.066 2.3E-06 46.0 13.0 140 133-301 191-346 (372)
217 2kc7_A BFR218_protein; tetratr 96.4 0.0036 1.2E-07 42.5 4.2 50 147-198 11-61 (99)
218 3ly7_A Transcriptional activat 96.3 0.026 8.8E-07 48.5 9.7 148 54-209 189-347 (372)
219 3bee_A Putative YFRE protein; 96.2 0.045 1.6E-06 36.8 8.8 68 135-204 5-75 (93)
220 1wy6_A Hypothetical protein ST 96.2 0.22 7.4E-06 35.8 12.3 137 71-237 19-157 (172)
221 3lvg_A Clathrin heavy chain 1; 96.1 1E-05 3.5E-10 71.0 -12.3 214 73-325 39-256 (624)
222 2kc7_A BFR218_protein; tetratr 95.9 0.02 6.9E-07 38.6 6.0 57 178-234 6-64 (99)
223 3u64_A Protein TP_0956; tetrat 95.5 0.085 2.9E-06 43.5 9.1 86 152-237 179-272 (301)
224 1wy6_A Hypothetical protein ST 95.5 0.46 1.6E-05 34.2 11.6 140 24-168 5-157 (172)
225 3bee_A Putative YFRE protein; 95.4 0.11 3.7E-06 34.9 8.3 65 171-235 5-73 (93)
226 1pc2_A Mitochondria fission pr 95.3 0.072 2.5E-06 39.4 7.4 69 134-203 30-102 (152)
227 3lvg_A Clathrin heavy chain 1; 95.1 0.0057 1.9E-07 54.1 1.1 236 58-319 53-325 (624)
228 2v5f_A Prolyl 4-hydroxylase su 95.1 0.11 3.7E-06 35.7 7.6 66 138-203 7-77 (104)
229 1pc2_A Mitochondria fission pr 95.1 0.077 2.6E-06 39.2 7.0 85 151-239 13-103 (152)
230 3u64_A Protein TP_0956; tetrat 95.0 0.064 2.2E-06 44.3 7.1 141 72-232 134-296 (301)
231 3mkq_B Coatomer subunit alpha; 94.5 1.1 3.9E-05 33.9 14.3 101 109-230 14-114 (177)
232 2v5f_A Prolyl 4-hydroxylase su 94.3 0.14 4.8E-06 35.1 6.6 69 22-90 3-79 (104)
233 4fhn_B Nucleoporin NUP120; pro 94.1 4.5 0.00015 40.7 19.5 149 64-225 817-991 (1139)
234 1nzn_A CGI-135 protein, fissio 92.9 0.41 1.4E-05 34.0 6.9 87 115-203 16-105 (126)
235 4b4t_P 26S proteasome regulato 92.9 4.8 0.00016 35.7 17.9 249 38-293 30-323 (445)
236 4gns_B Protein CSD3, chitin bi 92.6 2.2 7.6E-05 40.5 13.5 134 24-162 248-397 (754)
237 1nzn_A CGI-135 protein, fissio 92.1 1.2 4.2E-05 31.6 8.5 87 146-234 11-103 (126)
238 4fhn_B Nucleoporin NUP120; pro 92.0 11 0.00038 37.9 19.5 198 26-233 814-1049(1139)
239 2ff4_A Probable regulatory pro 91.5 0.77 2.6E-05 40.0 8.6 79 173-257 172-256 (388)
240 3ffl_A Anaphase-promoting comp 90.8 2.3 7.7E-05 31.8 9.1 103 103-205 23-155 (167)
241 1v54_E Cytochrome C oxidase po 90.2 1.8 6.3E-05 29.2 7.3 61 151-212 25-86 (109)
242 4h7y_A Dual specificity protei 89.8 2.8 9.5E-05 30.8 8.6 63 114-180 74-136 (161)
243 4h7y_A Dual specificity protei 89.8 3 0.0001 30.6 8.8 55 184-238 72-127 (161)
244 4gns_B Protein CSD3, chitin bi 89.7 2.5 8.5E-05 40.1 10.7 127 139-292 251-398 (754)
245 4b4t_S RPN3, 26S proteasome re 89.4 12 0.0004 33.7 14.3 64 60-126 232-296 (523)
246 4b4t_P 26S proteasome regulato 88.9 12 0.00041 33.1 14.8 166 28-199 141-322 (445)
247 2y69_E Cytochrome C oxidase su 86.4 3.9 0.00013 29.3 7.3 61 151-212 68-129 (152)
248 1wdy_A 2-5A-dependent ribonucl 86.3 11 0.00037 30.3 11.8 186 28-240 6-214 (285)
249 2wpv_A GET4, UPF0363 protein Y 86.1 8.8 0.0003 32.1 10.8 158 152-324 13-194 (312)
250 4ady_A RPN2, 26S proteasome re 85.7 11 0.00036 36.9 12.4 162 144-316 498-681 (963)
251 3txn_A 26S proteasome regulato 85.3 18 0.00061 31.4 12.9 168 25-198 20-207 (394)
252 2uwj_G Type III export protein 84.8 6.9 0.00024 26.3 8.6 85 39-139 21-105 (115)
253 1k1a_A B-cell lymphoma 3-encod 84.4 7.4 0.00025 30.5 9.6 190 30-239 12-210 (241)
254 2p58_C Putative type III secre 84.3 7.4 0.00025 26.2 8.8 85 39-139 22-106 (116)
255 2ff4_A Probable regulatory pro 84.0 3 0.0001 36.2 7.5 96 103-200 115-233 (388)
256 3o48_A Mitochondria fission 1 83.6 9.9 0.00034 27.1 8.6 71 133-204 37-110 (134)
257 3ffl_A Anaphase-promoting comp 83.1 12 0.00042 27.8 9.6 116 177-294 25-151 (167)
258 1v54_E Cytochrome C oxidase po 82.5 9 0.00031 25.9 8.3 62 116-180 26-87 (109)
259 3lpz_A GET4 (YOR164C homolog); 82.1 22 0.00075 30.0 14.3 59 264-324 135-193 (336)
260 3eiq_C Programmed cell death p 80.7 10 0.00034 32.4 9.2 61 138-200 219-281 (358)
261 1zbp_A Hypothetical protein VP 80.5 9.6 0.00033 31.0 8.4 117 31-165 4-129 (273)
262 1zbp_A Hypothetical protein VP 80.4 3.7 0.00013 33.4 6.0 58 145-204 6-63 (273)
263 3ltj_A Alpharep-4; protein eng 79.8 18 0.0006 27.5 17.4 91 134-232 88-178 (201)
264 4b4t_R RPN7, 26S proteasome re 77.9 12 0.00041 32.9 9.3 60 103-163 134-195 (429)
265 3kea_A K1L; tropism, ANK repea 76.9 11 0.00038 30.8 8.3 143 31-197 35-183 (285)
266 3ltm_A Alpha-REP4; protein eng 75.0 26 0.00087 26.8 17.2 154 57-233 31-184 (211)
267 3lpz_A GET4 (YOR164C homolog); 73.9 39 0.0013 28.4 18.3 114 60-196 36-160 (336)
268 3esl_A Checkpoint serine/threo 73.9 28 0.00097 26.8 9.2 53 149-201 92-144 (202)
269 4b4t_R RPN7, 26S proteasome re 73.4 26 0.00087 30.8 10.1 99 60-164 132-236 (429)
270 2wpv_A GET4, UPF0363 protein Y 72.4 41 0.0014 28.0 16.5 134 40-196 13-158 (312)
271 3txn_A 26S proteasome regulato 72.3 48 0.0016 28.7 15.0 129 103-233 22-167 (394)
272 2y69_E Cytochrome C oxidase su 71.9 25 0.00084 25.2 8.3 60 118-180 71-130 (152)
273 1wdy_A 2-5A-dependent ribonucl 71.7 36 0.0012 27.0 12.3 82 109-196 154-240 (285)
274 1y8m_A FIS1; mitochondria, unk 71.5 26 0.00089 25.3 9.6 71 133-204 36-109 (144)
275 2ion_A PDCD4, programmed cell 71.1 28 0.00095 25.5 9.2 84 174-257 11-98 (152)
276 3o48_A Mitochondria fission 1 70.8 26 0.00088 25.0 7.7 71 166-239 35-110 (134)
277 3ltm_A Alpha-REP4; protein eng 69.5 35 0.0012 26.0 18.6 110 58-187 63-172 (211)
278 4ady_A RPN2, 26S proteasome re 69.5 88 0.003 30.6 14.9 123 106-234 496-623 (963)
279 2zu6_B Programmed cell death p 68.0 12 0.00042 31.2 6.4 59 139-199 169-229 (307)
280 1ug3_A EIF4GI, eukaryotic prot 65.0 63 0.0021 27.2 10.7 28 62-89 14-41 (339)
281 1y8m_A FIS1; mitochondria, unk 63.7 39 0.0013 24.4 9.2 67 171-239 38-109 (144)
282 2nsz_A Programmed cell death p 62.2 38 0.0013 23.9 10.5 84 174-257 9-96 (129)
283 1qsa_A Protein (soluble lytic 61.9 1E+02 0.0034 28.6 20.6 204 23-233 101-347 (618)
284 4ets_A Ferric uptake regulatio 61.1 36 0.0012 25.1 7.3 72 116-189 13-86 (162)
285 2nsz_A Programmed cell death p 60.2 42 0.0014 23.7 7.2 65 103-169 10-76 (129)
286 3eu9_A Huntingtin-interacting 59.7 57 0.0019 25.0 9.4 52 32-87 14-67 (240)
287 2uwj_G Type III export protein 56.9 42 0.0014 22.6 8.2 78 151-235 21-98 (115)
288 2p58_C Putative type III secre 56.4 43 0.0015 22.6 8.8 78 151-235 22-99 (116)
289 4a1g_A Mitotic checkpoint seri 54.9 59 0.002 23.7 8.8 47 153-199 82-128 (152)
290 2ion_A PDCD4, programmed cell 54.3 33 0.0011 25.1 5.9 65 103-169 12-78 (152)
291 2d2s_A Exocyst complex compone 53.9 57 0.0019 25.9 7.7 90 105-198 23-117 (235)
292 3bu8_A Telomeric repeat-bindin 53.4 78 0.0027 24.7 10.5 69 245-313 88-162 (235)
293 1ug3_A EIF4GI, eukaryotic prot 52.9 24 0.00083 29.8 5.8 149 26-197 13-166 (339)
294 3ltj_A Alpharep-4; protein eng 52.5 71 0.0024 23.9 19.7 121 57-198 57-177 (201)
295 1wgl_A TOLL-interacting protei 50.4 29 0.001 20.6 4.2 49 189-240 10-58 (59)
296 3b7b_A Euchromatic histone-lys 49.1 88 0.003 24.0 9.3 51 31-85 15-67 (237)
297 1k1a_A B-cell lymphoma 3-encod 47.5 93 0.0032 23.8 10.1 123 106-239 12-143 (241)
298 4aez_C MAD3, mitotic spindle c 47.4 87 0.003 24.5 7.6 48 152-199 130-177 (223)
299 3aji_A 26S proteasome non-ATPa 47.1 93 0.0032 23.7 11.4 172 106-290 9-194 (231)
300 3ljn_A Hypothetical protein; a 47.0 62 0.0021 27.1 7.6 189 23-239 17-238 (364)
301 2wvi_A Mitotic checkpoint seri 46.0 26 0.00089 26.0 4.2 74 23-99 62-136 (164)
302 1oyz_A Hypothetical protein YI 45.6 1.1E+02 0.0039 24.3 17.1 188 23-234 67-263 (280)
303 4gq2_M Nucleoporin NUP120; bet 45.3 2.3E+02 0.0079 27.8 13.4 129 65-219 816-950 (950)
304 2fu4_A Ferric uptake regulatio 43.0 60 0.002 20.3 6.4 63 5-76 6-69 (83)
305 3hra_A Ankyrin repeat family p 42.7 1E+02 0.0034 22.8 8.2 20 66-85 43-62 (201)
306 3ygs_P Procaspase 9; apoptosis 41.8 51 0.0017 21.8 4.9 66 44-121 24-89 (97)
307 2f8y_A Notch homolog 1, transl 41.6 95 0.0033 23.5 7.4 201 1-229 4-212 (223)
308 3jxi_A Vanilloid receptor-rela 40.7 99 0.0034 24.2 7.6 55 30-84 8-71 (260)
309 2b7e_A PRE-mRNA processing pro 40.2 30 0.001 20.6 3.1 29 117-146 3-31 (59)
310 3bqo_A Telomeric repeat-bindin 40.0 1.2E+02 0.0043 23.2 9.2 47 188-234 94-146 (211)
311 2p1h_A APAF-1, apoptotic prote 39.9 76 0.0026 20.6 5.9 63 43-119 24-86 (94)
312 3kea_A K1L; tropism, ANK repea 39.1 1E+02 0.0034 24.8 7.4 165 3-196 46-216 (285)
313 2w57_A Ferric uptake regulatio 38.3 1.1E+02 0.0037 22.0 6.7 63 5-76 6-69 (150)
314 1s6c_A KV4 potassium channel-i 38.0 1.1E+02 0.0039 22.2 11.4 43 189-231 140-182 (183)
315 3eiq_C Programmed cell death p 37.5 1.9E+02 0.0065 24.6 10.5 116 174-294 219-339 (358)
316 2etb_A Transient receptor pote 37.4 55 0.0019 25.7 5.5 55 29-84 4-68 (256)
317 4aez_C MAD3, mitotic spindle c 37.3 39 0.0013 26.5 4.2 71 23-96 116-187 (223)
318 1mzb_A Ferric uptake regulatio 36.7 1.1E+02 0.0037 21.5 7.1 58 15-76 12-70 (136)
319 2zu6_B Programmed cell death p 36.2 1.8E+02 0.0063 24.0 9.8 106 174-282 168-278 (307)
320 3esl_A Checkpoint serine/threo 35.5 1.5E+02 0.0052 22.8 11.1 85 76-169 61-148 (202)
321 2xig_A Ferric uptake regulatio 35.4 1.2E+02 0.0042 21.8 6.8 58 15-76 21-78 (150)
322 2o03_A Probable zinc uptake re 35.2 88 0.003 21.9 5.6 49 28-76 14-62 (131)
323 2fe3_A Peroxide operon regulat 34.9 1.2E+02 0.0042 21.6 7.3 58 15-76 16-73 (145)
324 2d2s_A Exocyst complex compone 34.7 1.5E+02 0.0051 23.4 7.3 91 141-232 23-118 (235)
325 3mwm_A ZUR, putative metal upt 34.4 66 0.0023 22.9 4.9 51 27-77 16-66 (139)
326 3eyy_A Putative iron uptake re 34.0 1.3E+02 0.0044 21.5 6.9 58 128-188 11-68 (145)
327 3eyy_A Putative iron uptake re 33.9 1.3E+02 0.0044 21.5 6.4 57 15-76 13-69 (145)
328 2dzn_A Probable 26S proteasome 33.7 1.4E+02 0.0048 22.5 7.2 183 30-239 5-202 (228)
329 1oai_A Nuclear RNA export fact 33.5 29 0.00098 20.6 2.3 24 113-136 33-56 (59)
330 3jxi_A Vanilloid receptor-rela 33.5 1.7E+02 0.0058 22.8 9.7 89 107-197 9-115 (260)
331 4gq2_M Nucleoporin NUP120; bet 33.4 1.9E+02 0.0065 28.4 9.3 129 177-312 815-950 (950)
332 1qsa_A Protein (soluble lytic 32.9 3E+02 0.01 25.4 21.5 242 60-325 73-346 (618)
333 3b7b_A Euchromatic histone-lys 32.3 1.7E+02 0.0057 22.3 11.4 19 66-84 15-33 (237)
334 1n11_A Ankyrin; clathrin, BAND 32.1 2.4E+02 0.0082 24.1 11.2 233 29-290 16-267 (437)
335 1n11_A Ankyrin; clathrin, BAND 31.9 2.4E+02 0.0083 24.1 13.9 75 2-86 28-104 (437)
336 1bd8_A P19INK4D CDK4/6 inhibit 31.8 56 0.0019 23.1 4.3 17 68-84 8-24 (156)
337 3ygs_P Procaspase 9; apoptosis 31.4 1.1E+02 0.0038 20.1 5.6 65 157-226 25-89 (97)
338 2jul_A Calsenilin; EF-hand, ca 31.4 1.9E+02 0.0065 22.7 11.9 115 116-231 128-255 (256)
339 2o03_A Probable zinc uptake re 31.1 1E+02 0.0035 21.5 5.4 46 141-187 15-60 (131)
340 3bu8_A Telomeric repeat-bindin 30.7 1.9E+02 0.0066 22.5 7.5 23 179-201 121-143 (235)
341 3mwm_A ZUR, putative metal upt 30.5 94 0.0032 22.1 5.1 47 141-188 18-64 (139)
342 2ko4_A Mediator of RNA polymer 30.2 62 0.0021 20.5 3.4 39 193-231 24-62 (81)
343 1us7_B HSP90 CO-chaperone CDC3 30.1 1.3E+02 0.0044 24.3 6.1 25 60-84 40-64 (265)
344 3d9h_A CDNA FLJ77766, highly s 29.9 2.1E+02 0.0072 22.8 9.0 189 26-238 14-216 (285)
345 2f6m_A Suppressor protein STP2 28.5 83 0.0028 19.1 3.7 46 26-72 4-49 (65)
346 3l6a_A Eukaryotic translation 28.3 2.8E+02 0.0094 23.6 9.7 21 270-290 143-163 (364)
347 3m0z_A Putative aldolase; MCSG 28.0 43 0.0015 26.3 2.9 82 116-198 147-244 (249)
348 4g8k_A 2-5A-dependent ribonucl 27.5 2.5E+02 0.0086 22.9 13.2 18 179-196 243-260 (337)
349 2fe3_A Peroxide operon regulat 27.1 1.7E+02 0.0058 20.8 7.5 59 128-188 14-72 (145)
350 1mzb_A Ferric uptake regulatio 26.8 1.3E+02 0.0045 21.1 5.4 60 128-189 10-70 (136)
351 3qye_A TBC1 domain family memb 26.7 2.7E+02 0.0093 23.0 8.9 74 3-84 210-287 (331)
352 3us6_A Histidine-containing ph 26.0 1.9E+02 0.0065 20.9 9.0 24 210-233 98-121 (153)
353 2xig_A Ferric uptake regulatio 25.5 1.4E+02 0.0047 21.5 5.3 59 128-188 19-77 (150)
354 4ets_A Ferric uptake regulatio 25.0 2E+02 0.0069 21.0 7.1 57 15-75 27-85 (162)
355 3m6y_A 4-hydroxy-2-oxoglutarat 24.8 45 0.0015 26.5 2.5 82 116-198 170-267 (275)
356 2wvi_A Mitotic checkpoint seri 24.8 2.1E+02 0.0072 21.1 9.7 48 153-200 77-124 (164)
357 2fu4_A Ferric uptake regulatio 24.6 1.3E+02 0.0045 18.6 6.6 59 128-188 9-68 (83)
358 1bd8_A P19INK4D CDK4/6 inhibit 24.1 1.8E+02 0.0063 20.2 8.3 19 107-125 6-24 (156)
359 1jog_A Hypothetical protein HI 23.7 2.1E+02 0.007 20.6 7.2 59 116-177 54-115 (146)
360 3eu9_A Huntingtin-interacting 23.3 2.4E+02 0.0082 21.2 12.2 117 66-197 13-131 (240)
361 4b4t_S RPN3, 26S proteasome re 22.6 4.3E+02 0.015 23.8 14.0 64 171-234 230-299 (523)
362 3qil_A Clathrin heavy chain 1; 22.1 60 0.002 22.7 2.5 55 24-81 32-86 (125)
363 2ijq_A Hypothetical protein; s 21.2 2.5E+02 0.0086 20.6 7.0 61 102-164 35-103 (161)
364 2rg8_A Programmed cell death p 21.1 1E+02 0.0035 22.8 3.9 83 104-189 14-96 (165)
365 3e3v_A Regulatory protein RECX 20.9 2.6E+02 0.009 20.7 7.8 112 117-233 50-165 (177)
366 3bqo_A Telomeric repeat-bindin 20.6 1.2E+02 0.0041 23.3 4.0 45 270-314 122-166 (211)
367 3aji_A 26S proteasome non-ATPa 20.5 2.8E+02 0.0094 20.8 8.3 182 30-239 9-199 (231)
368 3dd4_A KV channel-interacting 20.4 2.9E+02 0.01 21.1 14.3 179 43-229 33-226 (229)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.5e-32 Score=248.90 Aligned_cols=196 Identities=10% Similarity=0.016 Sum_probs=172.7
Q ss_pred hhHHHHHHhhccCCCCCCCCCc-ccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCC-------
Q 042593 3 VYKQLQQIYIHSHSPLPPLFDS-FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF------- 74 (352)
Q Consensus 3 ~~~~M~~~~~~~~g~~P~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~------- 74 (352)
+++.|++ +++.+ .+ ..++.+|.+|++.|++++|+++|+.|.+.|++||..|||+||.+|++.+.
T Consensus 12 L~~~~~~-----k~~~~---spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~ 83 (501)
T 4g26_A 12 LSRKAKK-----KAIQQ---SPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPN 83 (501)
T ss_dssp --------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCC
T ss_pred HHHHHHH-----hcccC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhc
Confidence 4456666 55555 43 35899999999999999999999999999999999999999999998765
Q ss_pred --hhHHHHHhccCCC----CCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHh
Q 042593 75 --LKDSSKLFDELPE----RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK 148 (352)
Q Consensus 75 --~~~a~~~~~~m~~----~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~ 148 (352)
+++|.++|++|.+ ||..+ ||+||++|++.|++++|.++|++| ...|+.||..||+++|.+|++
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~t----------yn~lI~~~~~~g~~~~A~~l~~~M-~~~g~~Pd~~tyn~lI~~~~~ 152 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEAT----------FTNGARLAVAKDDPEMAFDMVKQM-KAFGIQPRLRSYGPALFGFCR 152 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHH----------HHHHHHHHHHHTCHHHHHHHHHHH-HHTTCCCCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHH----------HHHHHHHHHhcCCHHHHHHHHHHH-HHcCCCCccceehHHHHHHHH
Confidence 6789999999974 89888 999999999999999999999999 889999999999999999999
Q ss_pred CCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC--CCCHhhHHHHHHHHHcC
Q 042593 149 NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD--RKNLVSWTTIISGFAMH 218 (352)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~li~~~~~~ 218 (352)
.|++++|.+++++|.+.|+.| +..+|++||++|++.|++++|.++|++|... .|+..||++++..|+..
T Consensus 153 ~g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 153 KGDADKAYEVDAHMVESEVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999 9999999999999999999999999999765 79999999999999864
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4e-32 Score=247.54 Aligned_cols=214 Identities=11% Similarity=-0.008 Sum_probs=179.9
Q ss_pred hHHHHHhccCCCCCchh-HHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCC---
Q 042593 76 KDSSKLFDELPERNLVT-WNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGE--- 151 (352)
Q Consensus 76 ~~a~~~~~~m~~~~~~~-~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~--- 151 (352)
..++.+.+++.+..... ...+ ++.+|++|++.|++++|+++|++| ...|+.||..||+++|.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~------l~~~id~c~k~G~~~~A~~lf~~M-~~~Gv~pd~~tyn~Li~~c~~~~~~~~ 79 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEAL------LKQKLDMCSKKGDVLEALRLYDEA-RRNGVQLSQYHYNVLLYVCSLAEAATE 79 (501)
T ss_dssp -----------------CHHHH------HHHHHHHTTTSCCHHHHHHHHHHH-HHHTCCCCHHHHHHHHHHHTTCCCCSS
T ss_pred chHHHHHHHHHHhcccCCCHHH------HHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCCHhHHHHHHHHHHhCCchhh
Confidence 34556666666432211 1111 888999999999999999999999 889999999999999999998765
Q ss_pred ------hhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC--CCCHhhHHHHHHHHHcCCCHHH
Q 042593 152 ------VRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD--RKNLVSWTTIISGFAMHGMGKE 223 (352)
Q Consensus 152 ------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~ 223 (352)
++.|.++|++|.+.|+.| |..+|+++|.+|++.|++++|.++|++|... .||..|||++|.+|++.|++++
T Consensus 80 ~~~~~~l~~A~~lf~~M~~~G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~ 158 (501)
T 4g26_A 80 SSPNPGLSRGFDIFKQMIVDKVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADK 158 (501)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred hhhcchHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHH
Confidence 578999999999999999 9999999999999999999999999999876 7999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC--CCCchhh
Q 042593 224 AVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ--ITNVVVW 301 (352)
Q Consensus 224 a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~ 301 (352)
|.++|++|.+. |+.||..||++||.+|++.|++++|.+++++|++. .|+..||
T Consensus 159 A~~l~~~M~~~-------------------------G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~ 213 (501)
T 4g26_A 159 AYEVDAHMVES-------------------------EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTF 213 (501)
T ss_dssp HHHHHHHHHHT-------------------------TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHH
T ss_pred HHHHHHHHHhc-------------------------CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHH
Confidence 99999999987 77789999999999999999999999999999877 8999999
Q ss_pred HHHHHHHHhcccccCcccccc
Q 042593 302 RTGFLRLLINSYFFSPITLNS 322 (352)
Q Consensus 302 ~~li~~~~~~g~~~~a~~~~~ 322 (352)
+.++..+...+....+.....
T Consensus 214 ~~l~~~F~s~~a~~~g~~~~d 234 (501)
T 4g26_A 214 DMIEEWFKSEVATKTGVKKWD 234 (501)
T ss_dssp HHHHHHHHSHHHHTCCBSCCC
T ss_pred HHHHHHHhcCcchhhhhhhhh
Confidence 999999988776655544443
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.95 E-value=3.4e-26 Score=214.66 Aligned_cols=299 Identities=10% Similarity=-0.012 Sum_probs=236.4
Q ss_pred hhhHHHHHHhhccCCCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHH
Q 042593 2 LVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81 (352)
Q Consensus 2 ~~~~~M~~~~~~~~g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (352)
.+|++|.. ..| |..++..++.+|.+.|++++|..+|+.+... ++++.+++.++.+|.+.|++++|.++
T Consensus 105 ~~~~~~~~-------~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 172 (597)
T 2xpi_A 105 FVGEKVLD-------ITG---NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNL 172 (597)
T ss_dssp HHHHHHHH-------HHC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHh-------hCC---CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHH
Confidence 34556654 346 7778888888888888888888888877543 67888899999999999999999999
Q ss_pred hccCCCCC-------------------chhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccC-----------
Q 042593 82 FDELPERN-------------------LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY----------- 131 (352)
Q Consensus 82 ~~~m~~~~-------------------~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----------- 131 (352)
|+++...+ ..+ |+.++.+|.+.|++++|.++|++|.+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 242 (597)
T 2xpi_A 173 LGETNPFRKDEKNANKLLMQDGGIKLEASM----------CYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVS 242 (597)
T ss_dssp HCSSCTTC----------CCCSSCCHHHHH----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HhccCCccccccccccccccccccchhHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHH
Confidence 99644322 344 77788888888888888888877733211
Q ss_pred ----------------------------------------------------------CCCChhhHHHHHHHHHhCCChh
Q 042593 132 ----------------------------------------------------------TEPSEITILAVLPAIWKNGEVR 153 (352)
Q Consensus 132 ----------------------------------------------------------~~p~~~t~~~ll~~~~~~~~~~ 153 (352)
.+++..+++.++.++.+.|+++
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 322 (597)
T 2xpi_A 243 NHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFI 322 (597)
T ss_dssp TTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHH
T ss_pred hhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHH
Confidence 0256677888888888888888
Q ss_pred hHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042593 154 NCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQ 232 (352)
Q Consensus 154 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 232 (352)
+|..+++++.+.+.. +..+++.++.+|.+.|++++|.++++++... +.+..+|+.++..|.+.|++++|.++|+++.
T Consensus 323 ~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 400 (597)
T 2xpi_A 323 DVLAITTKILEIDPY--NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSS 400 (597)
T ss_dssp HHHHHHHHHHHHCTT--CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 888888888877643 6778888888888888888888888887654 4468889999999999999999999999988
Q ss_pred hcCCCCCcc-hhh-----------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCch
Q 042593 233 KVGLKPNRS-WRI-----------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVV 299 (352)
Q Consensus 233 ~~~~~p~~~-~~~-----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~ 299 (352)
+.. |+.. ++. .++|.++|+++.+. .+.+..+|..++.+|.+.|++++|.++|+++... +.+..
T Consensus 401 ~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 476 (597)
T 2xpi_A 401 TMD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPL 476 (597)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHH
T ss_pred HhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 743 3322 222 88999999998874 3457889999999999999999999999988765 66788
Q ss_pred hhHHHHHHHHhcccccCcccccccchhhh
Q 042593 300 VWRTGFLRLLINSYFFSPITLNSQRLFFF 328 (352)
Q Consensus 300 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 328 (352)
+|+.++..|.+.|++++|++++.+++...
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999887653
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.95 E-value=3.1e-26 Score=214.97 Aligned_cols=294 Identities=10% Similarity=-0.080 Sum_probs=177.3
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHH--------------------------------------H
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNT--------------------------------------A 64 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--------------------------------------~ 64 (352)
+..+|+.++.++.+.|++++|.++|+.|.+.+ +.+...+. .
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 277 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYML 277 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHH
Confidence 68899999999999999999999999998765 22223222 2
Q ss_pred HHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhcc------------
Q 042593 65 LGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE------------ 130 (352)
Q Consensus 65 li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------------ 130 (352)
++..|.+.|++++|.++|+++.+ ++..+ |+.++.+|.+.|++++|.++|+++....
T Consensus 278 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 347 (597)
T 2xpi_A 278 KLNKTSHEDELRRAEDYLSSINGLEKSSDL----------LLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLA 347 (597)
T ss_dssp TSCTTTTHHHHHHHHHHHHTSTTGGGCHHH----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHH
T ss_pred HHHHHcCcchHHHHHHHHHHhhcCCchHHH----------HHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHH
Confidence 24455567777778888877776 55566 4555555555555555555555552211
Q ss_pred --------------------CCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHH
Q 042593 131 --------------------YTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190 (352)
Q Consensus 131 --------------------~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 190 (352)
..+.+..+++.++.+|.+.|++++|..+++++.+.... +..+|+.++.+|.+.|++++
T Consensus 348 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~ 425 (597)
T 2xpi_A 348 SLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ--FGPAWIGFAHSFAIEGEHDQ 425 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHH
Confidence 01223445555566666666666666666665554322 45556666666666666666
Q ss_pred HHHHHHHhccCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh-----------hHhHHHHHHHHHHh
Q 042593 191 ASKLFEDTSVDR-KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI-----------GEEGLKFFDKMVEE 258 (352)
Q Consensus 191 a~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-----------~~~a~~~~~~m~~~ 258 (352)
|.++|+++.... .+..+|+.++.+|.+.|++++|.++|+++.+.... +..++. .++|..+|+++.+.
T Consensus 426 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 426 AISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 666666554442 35556666666666666666666666666553211 222222 66666666666543
Q ss_pred c---CCCCC--hhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCcccccccchhhhhh
Q 042593 259 C---EVLPD--IKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPA 330 (352)
Q Consensus 259 ~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 330 (352)
. +..|+ ..+|..++.+|.+.|++++|.+.++++... +.+..+|..+...|...|++++|.+.+.+.+...|.
T Consensus 505 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 1 33454 456666666666666666666666665544 445666666666666666666666666666554443
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.91 E-value=2e-22 Score=179.09 Aligned_cols=293 Identities=11% Similarity=0.019 Sum_probs=230.7
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGL 100 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~~ 100 (352)
+..+|..+..++.+.|++++|.+.|+.+.+.. +.+..+|..+..++.+.|++++|.+.|+++.+ |+... .
T Consensus 66 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~--~----- 137 (388)
T 1w3b_A 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC--V----- 137 (388)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTH--H-----
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--H-----
Confidence 55667777777777777777777777776654 33455677777777777777777777777654 43322 1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHH
Q 042593 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP-SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179 (352)
Q Consensus 101 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 179 (352)
+..+...+...|++++|.+.|+++... .| +..+|..+...+.+.|++++|...++++.+.+.. +...+..+.
T Consensus 138 --~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg 210 (388)
T 1w3b_A 138 --RSDLGNLLKALGRLEEAKACYLKAIET---QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN--FLDAYINLG 210 (388)
T ss_dssp --HHHHHHHHHTTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred --HHHHHHHHHHccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--cHHHHHHHH
Confidence 667777888888999999998888442 24 3567888888889999999999999988887543 677888888
Q ss_pred HHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcc-hhh-----------hH
Q 042593 180 DTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS-WRI-----------GE 246 (352)
Q Consensus 180 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~-----------~~ 246 (352)
.++...|++++|...|++.....| +..++..+..++.+.|++++|...|+++.+.. |+.. .+. .+
T Consensus 211 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~ 288 (388)
T 1w3b_A 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVA 288 (388)
T ss_dssp HHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHH
Confidence 999999999999999988765555 57889999999999999999999999998854 4322 222 89
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCcccccccch
Q 042593 247 EGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQRL 325 (352)
Q Consensus 247 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 325 (352)
+|...++++.+. .+.+..++..+...+.+.|++++|.+.++++... +.+..+|..+...|...|++++|+..+.+++
T Consensus 289 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 289 EAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999885 3457889999999999999999999999998877 6677899999999999999999999999988
Q ss_pred hhhhhHHHH
Q 042593 326 FFFPAALYA 334 (352)
Q Consensus 326 ~~~~~~~~~ 334 (352)
...|....+
T Consensus 367 ~~~p~~~~a 375 (388)
T 1w3b_A 367 RISPTFADA 375 (388)
T ss_dssp TTCTTCHHH
T ss_pred hhCCCCHHH
Confidence 766654333
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.88 E-value=4.5e-21 Score=170.32 Aligned_cols=288 Identities=12% Similarity=0.059 Sum_probs=243.9
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCc-hhHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNL-VTWNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~-~~~~~~i~~ 99 (352)
+...+..+...+...|++++|...++...+.. +.+..+|..+..+|.+.|++++|.+.|+++.+ |+. .+
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~------- 103 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG------- 103 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHH-------
Confidence 44566666777888999999999999888765 66888999999999999999999999999864 443 34
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh-hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHH
Q 042593 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE-ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178 (352)
Q Consensus 100 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 178 (352)
|..+..++.+.|++++|.+.|+++.+. .|+. ..+..+...+...|++++|...++++.+.... +..+|..+
T Consensus 104 ---~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 175 (388)
T 1w3b_A 104 ---YINLAAALVAAGDMEGAVQAYVSALQY---NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN--FAVAWSNL 175 (388)
T ss_dssp ---HHHHHHHHHHHSCSSHHHHHHHHHHHH---CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHH
Confidence 888999999999999999999999442 3554 46777888899999999999999999987543 78899999
Q ss_pred HHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh------------h
Q 042593 179 IDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI------------G 245 (352)
Q Consensus 179 i~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------~ 245 (352)
..++.+.|++++|.+.|+++....| +...|..+...+...|++++|...+++..+. .|+..... .
T Consensus 176 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~ 253 (388)
T 1w3b_A 176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLI 253 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCH
Confidence 9999999999999999999876655 5788999999999999999999999998875 35432222 8
Q ss_pred HhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCcccccccc
Q 042593 246 EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQR 324 (352)
Q Consensus 246 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 324 (352)
++|...++++.+. .+.+..+|..+..++.+.|++++|.+.++++... +.+..+|+.+...+...|++++|+..+.++
T Consensus 254 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 331 (388)
T 1w3b_A 254 DLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp HHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8999999999874 2235678999999999999999999999998776 678889999999999999999999999998
Q ss_pred hhhhhh
Q 042593 325 LFFFPA 330 (352)
Q Consensus 325 ~~~~~~ 330 (352)
+...|.
T Consensus 332 l~~~p~ 337 (388)
T 1w3b_A 332 LEVFPE 337 (388)
T ss_dssp TTSCTT
T ss_pred HhcCCC
Confidence 766554
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=6.5e-21 Score=172.45 Aligned_cols=288 Identities=10% Similarity=0.021 Sum_probs=244.4
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CC-chhHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RN-LVTWNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~~i~~ 99 (352)
+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+..+|...|++++|...|+++.+ |+ ...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~------- 96 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAA------- 96 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH-------
Confidence 67789999999999999999999999999875 56788999999999999999999999999875 33 333
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh----hhHHHH------------HHHHHhCCChhhHHHHHHHHH
Q 042593 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE----ITILAV------------LPAIWKNGEVRNCQLIHGYGE 163 (352)
Q Consensus 100 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~t~~~l------------l~~~~~~~~~~~a~~~~~~~~ 163 (352)
|..+...|.+.|++++|...|+++.. . .|+. ..+..+ ...+.+.|++++|...++.+.
T Consensus 97 ---~~~l~~~~~~~g~~~~A~~~~~~~~~-~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 170 (450)
T 2y4t_A 97 ---RLQRGHLLLKQGKLDEAEDDFKKVLK-S--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170 (450)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHT-S--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHh-c--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88899999999999999999999943 2 3443 444444 445889999999999999999
Q ss_pred hcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcch
Q 042593 164 KRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW 242 (352)
Q Consensus 164 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 242 (352)
+.... +..++..+..+|.+.|++++|.+.|+++... +.+..+|..+...|...|++++|...|+++.+. .|+...
T Consensus 171 ~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 246 (450)
T 2y4t_A 171 EVCVW--DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKR 246 (450)
T ss_dssp HHCTT--CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HhCCC--ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHH
Confidence 87544 7889999999999999999999999998765 557899999999999999999999999999875 344433
Q ss_pred h----------------h--------hHhHHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHHcCChhHHHHHHhcCCC
Q 042593 243 R----------------I--------GEEGLKFFDKMVEECEVLPD-----IKHYGCLIDILERAGRLEQAEEVASGIPS 293 (352)
Q Consensus 243 ~----------------~--------~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 293 (352)
. . .++|...++++.+. .|+ ...+..+..++.+.|++++|...++++..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 1 88999999999875 343 45788999999999999999999998865
Q ss_pred C-CCCchhhHHHHHHHHhcccccCcccccccchhhhhhH
Q 042593 294 Q-ITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAA 331 (352)
Q Consensus 294 ~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 331 (352)
. +.+..+|..+...|...|++++|+..+.+.+...|..
T Consensus 324 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 324 MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch
Confidence 5 5578999999999999999999999999987765543
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.82 E-value=4.7e-18 Score=153.62 Aligned_cols=276 Identities=8% Similarity=-0.003 Sum_probs=223.4
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCc------hhHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL------VTWNVI 96 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------~~~~~~ 96 (352)
+..++..+..++...|++++|...++.+.+.+ +.+..++..+..+|.+.|++++|.+.|+++.+.++ ..+..+
T Consensus 59 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 137 (450)
T 2y4t_A 59 NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQL 137 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 68889999999999999999999999999886 55688999999999999999999999999876332 343332
Q ss_pred HHHHH--hHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhh
Q 042593 97 ITGLV--KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHV 174 (352)
Q Consensus 97 i~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 174 (352)
...+. .+..+...+...|++++|...|+++.... +.+..++..+..++.+.|++++|...++.+.+.... +..+
T Consensus 138 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~ 213 (450)
T 2y4t_A 138 IKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND--NTEA 213 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS--CHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHH
Confidence 22111 13344566899999999999999994422 246678999999999999999999999999887543 7889
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHH------------HHHHHcCCCHHHHHHHHHHHHhcCCCCCcc
Q 042593 175 SNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTI------------ISGFAMHGMGKEAVENFERMQKVGLKPNRS 241 (352)
Q Consensus 175 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 241 (352)
+..+..+|...|++++|.+.|+++....| +...+..+ ...|...|++++|...|+++.+. .|+..
T Consensus 214 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~ 291 (450)
T 2y4t_A 214 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIA 291 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcch
Confidence 99999999999999999999999876655 44555544 78899999999999999999884 35532
Q ss_pred h-----hh-----------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHH
Q 042593 242 W-----RI-----------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTG 304 (352)
Q Consensus 242 ~-----~~-----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~l 304 (352)
. +. .++|...++++.+. .+.+...|..+..+|...|++++|...++++... +.+...+..+
T Consensus 292 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 369 (450)
T 2y4t_A 292 EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL 369 (450)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 2 11 89999999998875 2336789999999999999999999999998777 4456667666
Q ss_pred HHH
Q 042593 305 FLR 307 (352)
Q Consensus 305 i~~ 307 (352)
...
T Consensus 370 ~~~ 372 (450)
T 2y4t_A 370 EKA 372 (450)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 9
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=2.8e-18 Score=148.33 Aligned_cols=269 Identities=11% Similarity=-0.057 Sum_probs=200.5
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--C-CchhHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--R-NLVTWNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~~i~~ 99 (352)
+...+......+...|++++|.++++.+.+.. +.+...+..++.++...|++++|..+++++.+ | +...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------- 92 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVS------- 92 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH-------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHH-------
Confidence 78889999999999999999999999999876 55677788889999999999999999999865 3 3444
Q ss_pred HHhHHHHHHHHHhcC-CHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHH
Q 042593 100 LVKWTGIIDGYSRMN-RSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178 (352)
Q Consensus 100 ~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 178 (352)
|..+...+...| ++++|...|++..... +.+...+..+...+...|++++|...++...+.... +...+..+
T Consensus 93 ---~~~l~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l 165 (330)
T 3hym_B 93 ---WFAVGCYYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG--CHLPMLYI 165 (330)
T ss_dssp ---HHHHHHHHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT--CSHHHHHH
T ss_pred ---HHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc--cHHHHHHH
Confidence 888889999999 9999999999994322 234568999999999999999999999999988654 56777789
Q ss_pred HHHHHhhCChHHHHHHHHHhccCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC-------CCc-chhh-----
Q 042593 179 IDTYAKCGCIFSASKLFEDTSVDR-KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLK-------PNR-SWRI----- 244 (352)
Q Consensus 179 i~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-------p~~-~~~~----- 244 (352)
..+|...|++++|.+.+++..... .+...+..+...+...|++++|...+++..+.... |+. ..+.
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~ 245 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHV 245 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHH
Confidence 999999999999999999987764 46788999999999999999999999998774211 110 1111
Q ss_pred ------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHH
Q 042593 245 ------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRL 308 (352)
Q Consensus 245 ------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~ 308 (352)
.++|...+++..+. . +.+...+..+..++.+.|++++|.+.+++.... +.+...+..+...+
T Consensus 246 ~~~~g~~~~A~~~~~~a~~~-~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 246 CRKLKKYAEALDYHRQALVL-I-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-S-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhh-C-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 44455555544443 1 113344444555555555555555555554444 33334444444444
No 10
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.82 E-value=8.7e-19 Score=154.14 Aligned_cols=267 Identities=13% Similarity=0.004 Sum_probs=217.4
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--C-CchhHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--R-NLVTWNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~~i~~ 99 (352)
+...+..+...+.+.|++++|...++.+.+.. +.+..++..+..++...|++++|.+.|+++.+ | +..+
T Consensus 63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~------- 134 (368)
T 1fch_A 63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTA------- 134 (368)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHH-------
Confidence 46678889999999999999999999999875 55778899999999999999999999998764 3 3334
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh-hHHH---------------HHHHHHhCCChhhHHHHHHHHH
Q 042593 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI-TILA---------------VLPAIWKNGEVRNCQLIHGYGE 163 (352)
Q Consensus 100 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-t~~~---------------ll~~~~~~~~~~~a~~~~~~~~ 163 (352)
|..+...+...|++++|...++++.... |+.. .+.. .+..+...|++++|...++++.
T Consensus 135 ---~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 208 (368)
T 1fch_A 135 ---LMALAVSFTNESLQRQACEILRDWLRYT---PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAV 208 (368)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHTS---TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 8888899999999999999999984432 3222 2211 2333448899999999999998
Q ss_pred hcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcch
Q 042593 164 KRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW 242 (352)
Q Consensus 164 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 242 (352)
+......+..++..+..+|.+.|++++|.+.|++.....| +..+|..+...+...|++++|...+++..+..
T Consensus 209 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------- 281 (368)
T 1fch_A 209 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ------- 281 (368)
T ss_dssp HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred HhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Confidence 8754422577888999999999999999999998766544 67889999999999999999999999988631
Q ss_pred hhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCC-----------chhhHHHHHHHHh
Q 042593 243 RIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITN-----------VVVWRTGFLRLLI 310 (352)
Q Consensus 243 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~-----------~~~~~~li~~~~~ 310 (352)
+.+...+..+..+|.+.|++++|...++++... +.+ ..+|..+...|..
T Consensus 282 -------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (368)
T 1fch_A 282 -------------------PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM 342 (368)
T ss_dssp -------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH
T ss_pred -------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH
Confidence 235678899999999999999999999887655 223 6889999999999
Q ss_pred cccccCcccccccchhhhh
Q 042593 311 NSYFFSPITLNSQRLFFFP 329 (352)
Q Consensus 311 ~g~~~~a~~~~~~~~~~~~ 329 (352)
.|++++|..+..+.+..+.
T Consensus 343 ~g~~~~A~~~~~~~l~~~~ 361 (368)
T 1fch_A 343 LGQSDAYGAADARDLSTLL 361 (368)
T ss_dssp HTCGGGHHHHHTTCHHHHH
T ss_pred hCChHhHHHhHHHHHHHHH
Confidence 9999999999998775554
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=2.2e-18 Score=150.61 Aligned_cols=288 Identities=9% Similarity=0.018 Sum_probs=239.7
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CC-chhHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RN-LVTWNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~~i~~ 99 (352)
|+..+..+...+.+.|++++|...++.+.+.. +.+..++..+..++...|++++|...|+++.+ |+ ...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------- 73 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAA------- 73 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchH-------
Confidence 45678888899999999999999999999876 55788999999999999999999999999865 43 333
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC---C-hhhHHHH------------HHHHHhCCChhhHHHHHHHHH
Q 042593 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP---S-EITILAV------------LPAIWKNGEVRNCQLIHGYGE 163 (352)
Q Consensus 100 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p---~-~~t~~~l------------l~~~~~~~~~~~a~~~~~~~~ 163 (352)
|..+...+...|++++|...|++... ..| + ...+..+ ...+...|++++|...++.+.
T Consensus 74 ---~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 147 (359)
T 3ieg_A 74 ---RLQRGHLLLKQGKLDEAEDDFKKVLK---SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKIL 147 (359)
T ss_dssp ---HHHHHHHHHHHTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCChHHHHHHHHHHHh---cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 88899999999999999999999943 235 3 3344444 578889999999999999999
Q ss_pred hcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcch
Q 042593 164 KRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR-KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW 242 (352)
Q Consensus 164 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 242 (352)
+.... +...+..+..++...|++++|.+.+++..... .+..++..+...+...|++++|...+++..+.. |+...
T Consensus 148 ~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~ 223 (359)
T 3ieg_A 148 EVCVW--DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKR 223 (359)
T ss_dssp HHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HhCCC--chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchH
Confidence 87654 78899999999999999999999999987664 478889999999999999999999999998754 33222
Q ss_pred --------------------hh----hHhHHHHHHHHHHhcCCCCC-h----hhHHHHHHHHHHcCChhHHHHHHhcCCC
Q 042593 243 --------------------RI----GEEGLKFFDKMVEECEVLPD-I----KHYGCLIDILERAGRLEQAEEVASGIPS 293 (352)
Q Consensus 243 --------------------~~----~~~a~~~~~~m~~~~~~~p~-~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 293 (352)
+. .++|...+++..+. . |+ . ..+..+..++.+.|++++|...+++...
T Consensus 224 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 300 (359)
T 3ieg_A 224 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-E--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ 300 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 11 88999999998876 2 33 2 3355678899999999999999998876
Q ss_pred C-CCCchhhHHHHHHHHhcccccCcccccccchhhhhhH
Q 042593 294 Q-ITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPAA 331 (352)
Q Consensus 294 ~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 331 (352)
. +.+..+|..+...+...|++++|+..+.+.+...|..
T Consensus 301 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 301 MEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 5 5578899999999999999999999999988766654
No 12
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.80 E-value=6.1e-19 Score=155.21 Aligned_cols=266 Identities=12% Similarity=-0.029 Sum_probs=214.1
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CC-chhHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RN-LVTWNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~~i~~ 99 (352)
+...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+..+|...|++++|++.|++..+ |+ ..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~------- 135 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKA------- 135 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH-------
Confidence 56679999999999999999999999999876 56788999999999999999999999999875 33 344
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC--------ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCc
Q 042593 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP--------SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD 171 (352)
Q Consensus 100 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p--------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 171 (352)
|..+...|...|++++|...|+++.+...-.+ ....+..+...+.+.|++++|...++++.+......+
T Consensus 136 ---~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 212 (365)
T 4eqf_A 136 ---LMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID 212 (365)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC
T ss_pred ---HHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC
Confidence 88999999999999999999999844221001 1123344578899999999999999999988654226
Q ss_pred hhhHHHHHHHHHhhCChHHHHHHHHHhccCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHH
Q 042593 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVDR-KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLK 250 (352)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~ 250 (352)
..++..+..+|.+.|++++|.+.|++..... .+..+|+.+..+|...|++++|...|++..+.. |
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p------------ 278 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--P------------ 278 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C------------
Confidence 7889999999999999999999999987654 468899999999999999999999999988741 2
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCC-------------CchhhHHHHHHHHhcccccCc
Q 042593 251 FFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQIT-------------NVVVWRTGFLRLLINSYFFSP 317 (352)
Q Consensus 251 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------------~~~~~~~li~~~~~~g~~~~a 317 (352)
.+..++..+..+|.+.|++++|...++++....| +...|..+...+...|+.+.+
T Consensus 279 ------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 346 (365)
T 4eqf_A 279 ------------GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELF 346 (365)
T ss_dssp ------------TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHH
T ss_pred ------------CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHH
Confidence 2577889999999999999999999987755411 367899999999999999888
Q ss_pred ccccccch
Q 042593 318 ITLNSQRL 325 (352)
Q Consensus 318 ~~~~~~~~ 325 (352)
.....+.+
T Consensus 347 ~~~~~~~l 354 (365)
T 4eqf_A 347 QAANLGDL 354 (365)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhhH
Confidence 77766654
No 13
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=1.5e-18 Score=149.88 Aligned_cols=267 Identities=11% Similarity=-0.018 Sum_probs=222.0
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--C-CchhHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--R-NLVTWNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~~i~~ 99 (352)
+...+......+...|++++|..+++.+.+.. +.+...+..+..++...|++++|.+.|+++.+ | +...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~------- 91 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV------- 91 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHH-------
Confidence 56678888899999999999999999999876 55778899999999999999999999998865 3 3334
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh-hHHHH--------------HH-HHHhCCChhhHHHHHHHHH
Q 042593 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI-TILAV--------------LP-AIWKNGEVRNCQLIHGYGE 163 (352)
Q Consensus 100 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-t~~~l--------------l~-~~~~~~~~~~a~~~~~~~~ 163 (352)
|..+...+...|++++|.+.++++.... |+.. .+..+ .. .+...|++++|...++++.
T Consensus 92 ---~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 165 (327)
T 3cv0_A 92 ---HAALAVSHTNEHNANAALASLRAWLLSQ---PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAAL 165 (327)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHTS---TTTTTC--------------------CCTTSHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHhC---CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHH
Confidence 8888899999999999999999994432 3322 33222 22 3677899999999999999
Q ss_pred hcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcch
Q 042593 164 KRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW 242 (352)
Q Consensus 164 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 242 (352)
+.... +...+..+..+|.+.|++++|.+.+++.....| +..++..+...+...|++++|...+++..+..
T Consensus 166 ~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------- 236 (327)
T 3cv0_A 166 EMNPN--DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN------- 236 (327)
T ss_dssp HHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred hhCCC--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------
Confidence 87644 788999999999999999999999999866544 67889999999999999999999999988742
Q ss_pred hhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CC------------CchhhHHHHHHHH
Q 042593 243 RIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-IT------------NVVVWRTGFLRLL 309 (352)
Q Consensus 243 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~------------~~~~~~~li~~~~ 309 (352)
+.+...+..+..+|.+.|++++|.+.++++... +. +..+|..+...+.
T Consensus 237 -------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (327)
T 3cv0_A 237 -------------------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN 297 (327)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHH
T ss_pred -------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHH
Confidence 225678889999999999999999999887655 33 5779999999999
Q ss_pred hcccccCcccccccchhhhhhH
Q 042593 310 INSYFFSPITLNSQRLFFFPAA 331 (352)
Q Consensus 310 ~~g~~~~a~~~~~~~~~~~~~~ 331 (352)
..|++++|..++.+.+..+|..
T Consensus 298 ~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 298 VMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HTTCHHHHHHHTTCCSHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhcchh
Confidence 9999999999999988776654
No 14
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.80 E-value=9.3e-18 Score=154.09 Aligned_cols=312 Identities=11% Similarity=-0.056 Sum_probs=222.9
Q ss_pred hhhHHHHHHhhccCCCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHH
Q 042593 2 LVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81 (352)
Q Consensus 2 ~~~~~M~~~~~~~~g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (352)
..|+++.. ..| |..+|..+..++.+.|++++|...++.+.+.+ +.+..++..+..+|.+.|++++|...
T Consensus 27 ~~~~~al~-------~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 95 (514)
T 2gw1_A 27 KYYNWALE-------LKE---DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFADAMFD 95 (514)
T ss_dssp HHHHHHHH-------HCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHh-------cCc---cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34566665 237 88999999999999999999999999999876 55678899999999999999999988
Q ss_pred hccCCCCCc---h-------------------------------------------------------------------
Q 042593 82 FDELPERNL---V------------------------------------------------------------------- 91 (352)
Q Consensus 82 ~~~m~~~~~---~------------------------------------------------------------------- 91 (352)
|+++.+.+. .
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (514)
T 2gw1_A 96 LSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPEL 175 (514)
T ss_dssp HHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCC
T ss_pred HHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHH
Confidence 876532100 0
Q ss_pred -----------------------------------hHHHHHH------------------HHHhHHHHHHHHHhcCCHHH
Q 042593 92 -----------------------------------TWNVIIT------------------GLVKWTGIIDGYSRMNRSNE 118 (352)
Q Consensus 92 -----------------------------------~~~~~i~------------------~~~~~~~li~~~~~~~~~~~ 118 (352)
.+...+. ....|..+...+...|++++
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (514)
T 2gw1_A 176 TFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLG 255 (514)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHH
Confidence 0000000 00125556666777788888
Q ss_pred HHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHh
Q 042593 119 ALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198 (352)
Q Consensus 119 a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 198 (352)
|...|+++.. .. |+..++..+..++...|++++|...++.+.+.... +..++..+..++...|++++|.+.|++.
T Consensus 256 A~~~~~~~l~-~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (514)
T 2gw1_A 256 AHEDIKKAIE-LF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN--NSSVYYHRGQMNFILQNYDQAGKDFDKA 330 (514)
T ss_dssp HHHHHHHHHH-HC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT--CTHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHh-hC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC--CHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8888887733 22 33667777788888888888888888887776543 6677788888888888888888888877
Q ss_pred ccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh-----------hHhHHHHHHHHHHhcCCCCC--
Q 042593 199 SVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI-----------GEEGLKFFDKMVEECEVLPD-- 264 (352)
Q Consensus 199 ~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-----------~~~a~~~~~~m~~~~~~~p~-- 264 (352)
....| +...+..+...+...|++++|...++++.+.... +...+. .++|...++++.....-.++
T Consensus 331 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 409 (514)
T 2gw1_A 331 KELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIY 409 (514)
T ss_dssp HHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCS
T ss_pred HHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHH
Confidence 65543 5677778888888888888888888887765321 111221 77888888877764122222
Q ss_pred --hhhHHHHHHHHHH---cCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCcccccccchhhhhh
Q 042593 265 --IKHYGCLIDILER---AGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPA 330 (352)
Q Consensus 265 --~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 330 (352)
...+..+..++.+ .|++++|...++.+... +.+..+|..+...|...|++++|...+.+.+...|.
T Consensus 410 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 410 VGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp SCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 3377788888888 88888888888876655 456677888888888888888888888887665544
No 15
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=9.7e-20 Score=171.84 Aligned_cols=149 Identities=11% Similarity=0.050 Sum_probs=123.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHhccCC-------CCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccC
Q 042593 59 VYVNTALGDMYVSLGFLKDSSKLFDELP-------ERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY 131 (352)
Q Consensus 59 ~~~~~~li~~~~~~g~~~~a~~~~~~m~-------~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 131 (352)
..|||+||++||+.|++++|.++|++|. .||++| ||+||++||+.|++++|.++|++| +..|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvT----------YNtLI~Glck~G~~~eA~~Lf~eM-~~~G 195 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDM----------YNAVMLGWARQGAFKELVYVLFMV-KDAG 195 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHH----------HHHHHHHHHHHTCHHHHHHHHHHH-HHTT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhH----------HHHHHHHHHhCCCHHHHHHHHHHH-HHcC
Confidence 4589999999999999999999997764 489999 999999999999999999999999 9999
Q ss_pred CCCChhhHHHHHHHHHhCCCh-hhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC---CCCHhh
Q 042593 132 TEPSEITILAVLPAIWKNGEV-RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD---RKNLVS 207 (352)
Q Consensus 132 ~~p~~~t~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~ 207 (352)
+.||..||+++|.++++.|+. ++|.+++++|.+.|+.| |..+|++++....+.+-++.+.++..++... .|.+.+
T Consensus 196 ~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~P-D~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t 274 (1134)
T 3spa_A 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKL-QALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNT 274 (1134)
T ss_dssp CCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCS-HHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCC
T ss_pred CCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCC-ChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccc
Confidence 999999999999999999985 78999999999999999 9999999998777665444444443333221 122445
Q ss_pred HHHHHHHHHcCC
Q 042593 208 WTTIISGFAMHG 219 (352)
Q Consensus 208 ~~~li~~~~~~~ 219 (352)
...|.+.|.+.+
T Consensus 275 ~~LL~dl~s~d~ 286 (1134)
T 3spa_A 275 SKLLRDVYAKDG 286 (1134)
T ss_dssp CTTTHHHHCCCS
T ss_pred hHHHHHHHccCC
Confidence 556666777655
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.78 E-value=2.3e-16 Score=136.26 Aligned_cols=240 Identities=14% Similarity=0.038 Sum_probs=195.5
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcC-ChhHHHHHhccCCC--C-CchhHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG-FLKDSSKLFDELPE--R-NLVTWNVIIT 98 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~--~-~~~~~~~~i~ 98 (352)
+...+..++..+...|++++|..+++.+.+.. +.+...+..+...+...| ++++|.+.|++..+ | +...
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~------ 127 (330)
T 3hym_B 55 HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPA------ 127 (330)
T ss_dssp CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHH------
T ss_pred ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHH------
Confidence 56677888899999999999999999999875 557888999999999999 99999999999765 3 3344
Q ss_pred HHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHH
Q 042593 99 GLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178 (352)
Q Consensus 99 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 178 (352)
|..+...+...|++++|...|+++.... +.+...+..+...+...|++++|...+++..+.... +...+..+
T Consensus 128 ----~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l 199 (330)
T 3hym_B 128 ----WIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE--DPFVMHEV 199 (330)
T ss_dssp ----HHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT--CHHHHHHH
T ss_pred ----HHHHHHHHHHccCHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC--ChHHHHHH
Confidence 8889999999999999999999994432 234567778999999999999999999999887644 78899999
Q ss_pred HHHHHhhCChHHHHHHHHHhccC----------CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcch-hh---
Q 042593 179 IDTYAKCGCIFSASKLFEDTSVD----------RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW-RI--- 244 (352)
Q Consensus 179 i~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~--- 244 (352)
...+...|++++|.+.+++.... +.+..++..+...+...|++++|...+++..+.. |+... +.
T Consensus 200 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~la 277 (330)
T 3hym_B 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI--PQNASTYSAIG 277 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCSHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC--ccchHHHHHHH
Confidence 99999999999999999986543 2345789999999999999999999999998864 33222 22
Q ss_pred --------hHhHHHHHHHHHHhcCCCC-ChhhHHHHHHHH-HHcCChh
Q 042593 245 --------GEEGLKFFDKMVEECEVLP-DIKHYGCLIDIL-ERAGRLE 282 (352)
Q Consensus 245 --------~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~-~~~g~~~ 282 (352)
.++|...+++..+. .| +...+..+..++ ...|+.+
T Consensus 278 ~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 278 YIHSLMGNFENAVDYFHTALGL---RRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHTCHHHHHHHHHTTTTT---CSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHhccHHHHHHHHHHHHcc---CCCchHHHHHHHHHHHHHhCchh
Confidence 88888888887753 44 567777787777 4555543
No 17
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2e-17 Score=151.91 Aligned_cols=293 Identities=11% Similarity=-0.082 Sum_probs=236.0
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CC-chhHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RN-LVTWNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~~i~~ 99 (352)
+...+......+.+.|++++|...|+.+.+.. |+..++..+..+|.+.|++++|...|+++.+ |+ ...
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------- 75 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKV------- 75 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHH-------
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHH-------
Confidence 34567788899999999999999999999877 7999999999999999999999999999875 43 334
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCC----------------------------------------------
Q 042593 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE---------------------------------------------- 133 (352)
Q Consensus 100 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---------------------------------------------- 133 (352)
|..+..++.+.|++++|...|+++....+..
T Consensus 76 ---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (514)
T 2gw1_A 76 ---LLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK 152 (514)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------
T ss_pred ---HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH
Confidence 8889999999999999999999984433200
Q ss_pred ------------------------------CC-hhhHHHHHHHHH---hCCChhhHHHHHHHHHh-----cCCC------
Q 042593 134 ------------------------------PS-EITILAVLPAIW---KNGEVRNCQLIHGYGEK-----RGFN------ 168 (352)
Q Consensus 134 ------------------------------p~-~~t~~~ll~~~~---~~~~~~~a~~~~~~~~~-----~~~~------ 168 (352)
|+ ...+......+. +.|++++|...++++.+ ....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 232 (514)
T 2gw1_A 153 DKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL 232 (514)
T ss_dssp ----CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH
T ss_pred hhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc
Confidence 00 122223333333 38999999999999988 3111
Q ss_pred -CCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh---
Q 042593 169 -AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI--- 244 (352)
Q Consensus 169 -~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--- 244 (352)
|.+..++..+..++...|++++|.+.|++.....|+...+..+...+...|++++|...++++.+..... ...+.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~ 311 (514)
T 2gw1_A 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNN-SSVYYHRG 311 (514)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTC-THHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCC-HHHHHHHH
Confidence 2256788899999999999999999999987666668889999999999999999999999998854322 22222
Q ss_pred --------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhccccc
Q 042593 245 --------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFF 315 (352)
Q Consensus 245 --------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~ 315 (352)
.++|...+++..+. .+.+...+..+...+...|++++|...++++... +.+..+|..+...+...|+++
T Consensus 312 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 389 (514)
T 2gw1_A 312 QMNFILQNYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFD 389 (514)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHH
Confidence 88999999998875 2336778889999999999999999999988766 557789999999999999999
Q ss_pred Ccccccccchhhhhh
Q 042593 316 SPITLNSQRLFFFPA 330 (352)
Q Consensus 316 ~a~~~~~~~~~~~~~ 330 (352)
+|+..+.+.+...|.
T Consensus 390 ~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 390 KALKQYDLAIELENK 404 (514)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999988765554
No 18
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=7.1e-19 Score=166.00 Aligned_cols=97 Identities=9% Similarity=0.091 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHH---hcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC--CCCHhhHHHH
Q 042593 137 ITILAVLPAIWKNGEVRNCQLIHGYGE---KRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD--RKNLVSWTTI 211 (352)
Q Consensus 137 ~t~~~ll~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~l 211 (352)
.||+++|++|++.|++++|..++++|. +.|+.| |..+||+||++||+.|++++|.++|++|... .||+.|||+|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 467777777777777777777776654 346666 7777777777777777777777777777655 5777777777
Q ss_pred HHHHHcCCCH-HHHHHHHHHHHhc
Q 042593 212 ISGFAMHGMG-KEAVENFERMQKV 234 (352)
Q Consensus 212 i~~~~~~~~~-~~a~~~~~~m~~~ 234 (352)
|.++|+.|+. ++|.++|++|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc
Confidence 7777777764 6677777777766
No 19
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.75 E-value=9.1e-16 Score=133.90 Aligned_cols=281 Identities=7% Similarity=-0.021 Sum_probs=221.7
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCc---hhHHHHHH-
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL---VTWNVIIT- 98 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~i~- 98 (352)
+..++..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...|++..+.++ ........
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l 114 (359)
T 3ieg_A 36 NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQL 114 (359)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHH
Confidence 57789999999999999999999999999875 44678899999999999999999999999876333 22111100
Q ss_pred --H--HHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhh
Q 042593 99 --G--LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHV 174 (352)
Q Consensus 99 --~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 174 (352)
. ...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++...+.... +..+
T Consensus 115 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~ 190 (359)
T 3ieg_A 115 VKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD--NTEA 190 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC--CHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHH
Confidence 0 0012233678899999999999999994432 245678999999999999999999999999887543 7889
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHhccCCCC-HhhHH------------HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcc
Q 042593 175 SNCLIDTYAKCGCIFSASKLFEDTSVDRKN-LVSWT------------TIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241 (352)
Q Consensus 175 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 241 (352)
+..+..++...|++++|.+.|++.....|+ ...+. .+...+.+.|++++|...+++..+.. |+..
T Consensus 191 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~ 268 (359)
T 3ieg_A 191 FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVA 268 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCch
Confidence 999999999999999999999998665443 34333 23667899999999999999998854 4432
Q ss_pred hhh----------------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHH
Q 042593 242 WRI----------------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTG 304 (352)
Q Consensus 242 ~~~----------------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~l 304 (352)
... .++|...+++..+. .+.+..++..+..++.+.|++++|.+.+++.... +.+...+..+
T Consensus 269 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 346 (359)
T 3ieg_A 269 EYTVRSKERICHCFSKDEKPVEAIRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGL 346 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 211 89999999999875 2336789999999999999999999999998877 5556677777
Q ss_pred HHHHHhcc
Q 042593 305 FLRLLINS 312 (352)
Q Consensus 305 i~~~~~~g 312 (352)
.......+
T Consensus 347 ~~~~~~~~ 354 (359)
T 3ieg_A 347 EKAQRLLK 354 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655443
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.75 E-value=4.4e-17 Score=138.72 Aligned_cols=253 Identities=10% Similarity=-0.050 Sum_probs=195.7
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhCCCCc--hhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHH
Q 042593 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSH--VYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIID 108 (352)
Q Consensus 31 l~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~ 108 (352)
++.....|+++.|+...+..... .|+ ....-.+..+|...|+++.|...++....|+..+ +..+..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a----------~~~la~ 73 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQA----------VRMFAE 73 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHH----------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHH----------HHHHHH
Confidence 44556788999888887765433 343 3455667889999999999999887753334334 778888
Q ss_pred HHHhcCCHHHHHHHHHHhHhccCCCCCh-hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCC
Q 042593 109 GYSRMNRSNEALALFRRMAACEYTEPSE-ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC 187 (352)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 187 (352)
.+...++.++|++.++++ -..+..|+. ..+..+..++...|++++|...++. .. +...+..+..+|.+.|+
T Consensus 74 ~~~~~~~~~~A~~~l~~l-l~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~-~~~~~~~l~~~~~~~g~ 145 (291)
T 3mkr_A 74 YLASHSRRDAIVAELDRE-MSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GD-SLECMAMTVQILLKLDR 145 (291)
T ss_dssp HHHCSTTHHHHHHHHHHH-HHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CC-SHHHHHHHHHHHHHTTC
T ss_pred HHcCCCcHHHHHHHHHHH-HhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CC-CHHHHHHHHHHHHHCCC
Confidence 899999999999999998 444444654 4566777889999999999999987 23 78889999999999999
Q ss_pred hHHHHHHHHHhccCCCCHhhH---HHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCC
Q 042593 188 IFSASKLFEDTSVDRKNLVSW---TTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPD 264 (352)
Q Consensus 188 ~~~a~~~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~ 264 (352)
.++|.+.|+++....|+.... ...+..+...|++++|..+|+++.+. .+.+
T Consensus 146 ~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--------------------------~p~~ 199 (291)
T 3mkr_A 146 LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--------------------------CSPT 199 (291)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--------------------------SCCC
T ss_pred HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--------------------------CCCc
Confidence 999999999987666664322 22334455668999999999998874 2347
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccC-cccccccchhhhh
Q 042593 265 IKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFS-PITLNSQRLFFFP 329 (352)
Q Consensus 265 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~~ 329 (352)
...++.+..++.+.|++++|...+++.... +.+..++..++..+...|+..+ +.+++++.+...|
T Consensus 200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 888999999999999999999999987766 6677899999999999999876 4567777665444
No 21
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.72 E-value=9e-16 Score=141.76 Aligned_cols=300 Identities=11% Similarity=-0.052 Sum_probs=235.6
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC-CCch----------
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE-RNLV---------- 91 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~---------- 91 (352)
+..++..+..++.+.|++++|.+.++.+.+.. +.+..++..+..++...|++++|.+.|+.+.. |+..
T Consensus 58 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 136 (537)
T 3fp2_A 58 EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLER 136 (537)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHH
Confidence 67889999999999999999999999999876 55788899999999999999999988854421 1100
Q ss_pred -----------------------------------------------------------hHHHHHH--------------
Q 042593 92 -----------------------------------------------------------TWNVIIT-------------- 98 (352)
Q Consensus 92 -----------------------------------------------------------~~~~~i~-------------- 98 (352)
....+..
T Consensus 137 ~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~ 216 (537)
T 3fp2_A 137 NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAND 216 (537)
T ss_dssp HHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 0000000
Q ss_pred -------H------------------HHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChh
Q 042593 99 -------G------------------LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVR 153 (352)
Q Consensus 99 -------~------------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~ 153 (352)
. ...|..+...+...|++++|...|++... ..|+..++..+...+...|+++
T Consensus 217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN---LHPTPNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCCCHHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh---cCCCchHHHHHHHHHHHhcCHH
Confidence 0 00256666788889999999999999944 2466778999999999999999
Q ss_pred hHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042593 154 NCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQ 232 (352)
Q Consensus 154 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 232 (352)
+|...++.+.+.... +..++..+..++...|++++|.+.|++.....| +...|..+...+...|++++|...++++.
T Consensus 294 ~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 371 (537)
T 3fp2_A 294 EFFKFFQKAVDLNPE--YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETK 371 (537)
T ss_dssp HHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999987644 788899999999999999999999999876544 57889999999999999999999999998
Q ss_pred hcCCCCCcch-hh-----------hHhHHHHHHHHHHhcCCCC----ChhhHHHHHHHHHHc----------CChhHHHH
Q 042593 233 KVGLKPNRSW-RI-----------GEEGLKFFDKMVEECEVLP----DIKHYGCLIDILERA----------GRLEQAEE 286 (352)
Q Consensus 233 ~~~~~p~~~~-~~-----------~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~----------g~~~~A~~ 286 (352)
+.. |+... +. .++|...+++..+...-.+ ....+..+..++.+. |++++|..
T Consensus 372 ~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~ 449 (537)
T 3fp2_A 372 LKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIK 449 (537)
T ss_dssp HHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHH
T ss_pred HhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHH
Confidence 864 33322 22 8899999998876511111 122244556778888 99999999
Q ss_pred HHhcCCCC-CCCchhhHHHHHHHHhcccccCcccccccchhhhhh
Q 042593 287 VASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPA 330 (352)
Q Consensus 287 ~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 330 (352)
.+++.... +.+..+|..+...|...|++++|+..+.+.+...|.
T Consensus 450 ~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 450 LLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 99988766 567789999999999999999999999998765443
No 22
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.71 E-value=3.2e-16 Score=144.77 Aligned_cols=291 Identities=11% Similarity=-0.030 Sum_probs=225.5
Q ss_pred cccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CC-chhHHHHHHHH
Q 042593 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RN-LVTWNVIITGL 100 (352)
Q Consensus 24 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~~i~~~ 100 (352)
...+..+...+.+.|++++|...|+.+.+.. +.++.++..+..+|.+.|++++|++.|+++.+ |+ ...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------- 95 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKA-------- 95 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH--------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHH--------
Confidence 4677888899999999999999999999876 56789999999999999999999999999875 43 334
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCC------------------------------------CChhhHH----
Q 042593 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTE------------------------------------PSEITIL---- 140 (352)
Q Consensus 101 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~------------------------------------p~~~t~~---- 140 (352)
|..+..++...|++++|...|+.+ ...+-. |+.....
T Consensus 96 --~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 172 (537)
T 3fp2_A 96 --LLRRASANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG 172 (537)
T ss_dssp --HHHHHHHHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH
T ss_pred --HHHHHHHHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH
Confidence 888889999999999999999644 221110 1111100
Q ss_pred ----------------------HHHHHHHh------------CCChhhHHHHHHHHHhcCCCCCc-----hhhHHHHHHH
Q 042593 141 ----------------------AVLPAIWK------------NGEVRNCQLIHGYGEKRGFNAFD-----IHVSNCLIDT 181 (352)
Q Consensus 141 ----------------------~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~ 181 (352)
.+..++.. .|++++|..+++.+.+.....+. ..++..+...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~ 252 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIF 252 (537)
T ss_dssp TSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHH
Confidence 01122211 14788899999988876544201 2356677788
Q ss_pred HHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCc-chhh-----------hHhHH
Q 042593 182 YAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR-SWRI-----------GEEGL 249 (352)
Q Consensus 182 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~-----------~~~a~ 249 (352)
+...|++++|.+.|++.....|+...+..+...+...|++++|...+++..+.. |+. ..+. .++|.
T Consensus 253 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 253 HFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 889999999999999987777888889999999999999999999999998854 332 2222 89999
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCcccccccchhhh
Q 042593 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFF 328 (352)
Q Consensus 250 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 328 (352)
..+++..+. . +.+...+..+..++...|++++|...++++... +.+...|..+...+...|++++|+..+.+.+...
T Consensus 331 ~~~~~a~~~-~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 331 EDFQKAQSL-N-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHH-C-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 999999875 2 235678899999999999999999999988766 5677899999999999999999999999987655
Q ss_pred hh
Q 042593 329 PA 330 (352)
Q Consensus 329 ~~ 330 (352)
|.
T Consensus 409 ~~ 410 (537)
T 3fp2_A 409 EV 410 (537)
T ss_dssp HH
T ss_pred Cc
Confidence 43
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=5.6e-16 Score=136.18 Aligned_cols=253 Identities=12% Similarity=-0.061 Sum_probs=192.1
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CC-chhHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RN-LVTWNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~~i~~ 99 (352)
+..++..+...+.+.|++++|...|+.+.+.. +.+..++..+..+|...|++++|...|+++.+ |+ ...+..+...
T Consensus 98 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 176 (365)
T 4eqf_A 98 DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGS 176 (365)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccc
Confidence 67889999999999999999999999999876 55688999999999999999999999999865 21 1111100000
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHH
Q 042593 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179 (352)
Q Consensus 100 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 179 (352)
...+..+...+...|++++|...|+++.....-.++..++..+...+.+.|++++|...+++..+.... +..++..+.
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~ 254 (365)
T 4eqf_A 177 PGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE--DYSLWNRLG 254 (365)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Confidence 001455688899999999999999999554433236779999999999999999999999999987644 788999999
Q ss_pred HHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHh
Q 042593 180 DTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEE 258 (352)
Q Consensus 180 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~ 258 (352)
.+|.+.|++++|.+.|++.....| +..+|..+..+|...|++++|...|++..+......... ...
T Consensus 255 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------~~~ 321 (365)
T 4eqf_A 255 ATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQ-------------QVP 321 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC--------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCc-------------ccc
Confidence 999999999999999999876655 588899999999999999999999999887421100000 000
Q ss_pred cCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCC
Q 042593 259 CEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292 (352)
Q Consensus 259 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 292 (352)
....+...|..+..++...|+.+.+.++.++-.
T Consensus 322 -~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l 354 (365)
T 4eqf_A 322 -HPAISGNIWAALRIALSLMDQPELFQAANLGDL 354 (365)
T ss_dssp ------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred -hhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence 011246789999999999999999999887643
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.68 E-value=1.9e-15 Score=132.78 Aligned_cols=250 Identities=12% Similarity=-0.044 Sum_probs=193.4
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCc-hhHHHH---
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNL-VTWNVI--- 96 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~-~~~~~~--- 96 (352)
+..++..+..++.+.|++++|.+.++.+.+.. +.+..++..+..+|...|++++|.+.|+++.+ |+. ..+...
T Consensus 97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 175 (368)
T 1fch_A 97 HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG 175 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 67789999999999999999999999999876 56788999999999999999999999998764 221 110000
Q ss_pred ---HHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchh
Q 042593 97 ---ITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIH 173 (352)
Q Consensus 97 ---i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 173 (352)
...-..+. .+..+...|++++|...|+++.....-.++..++..+...+.+.|++++|...++++.+.... +..
T Consensus 176 ~~~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~~ 252 (368)
T 1fch_A 176 AGGAGLGPSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN--DYL 252 (368)
T ss_dssp ----------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH
T ss_pred hhhhcccHHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--CHH
Confidence 00000011 233344889999999999999554332235778999999999999999999999999887543 788
Q ss_pred hHHHHHHHHHhhCChHHHHHHHHHhccCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHH
Q 042593 174 VSNCLIDTYAKCGCIFSASKLFEDTSVDR-KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFF 252 (352)
Q Consensus 174 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~ 252 (352)
++..+..++.+.|++++|.+.|++..... .+...+..+..+|.+.|++++|...|++..+........
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------- 321 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGP----------- 321 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCc-----------
Confidence 99999999999999999999999976654 468889999999999999999999999988742110000
Q ss_pred HHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcC
Q 042593 253 DKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291 (352)
Q Consensus 253 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 291 (352)
... .......+|..+..+|.+.|+.++|..++++.
T Consensus 322 ---~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 322 ---RGE-GGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp -------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred ---ccc-ccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 000 01123678999999999999999999998753
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.67 E-value=5.1e-17 Score=142.41 Aligned_cols=235 Identities=11% Similarity=0.022 Sum_probs=79.9
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGL 100 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~~ 100 (352)
++.+|..+..++.+.|++++|.+.|.. .+|..+|..++.++...|++++|++.++...+ +++.+
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i-------- 96 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV-------- 96 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchh--------
Confidence 444666666666666666666666643 24555666666666666666666665555543 23333
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHH
Q 042593 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180 (352)
Q Consensus 101 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 180 (352)
.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+ ..|..++.
T Consensus 97 --~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~ 156 (449)
T 1b89_A 97 --ETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLAS 156 (449)
T ss_dssp --------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT----------TCHHHHHH
T ss_pred --HHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHH
Confidence 5566666666666666555442 245556666666666666666666666643 24666666
Q ss_pred HHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcC
Q 042593 181 TYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECE 260 (352)
Q Consensus 181 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~ 260 (352)
++.+.|++++|.+.++++ .++.+|..++.+|+..|+++.|......+ .
T Consensus 157 ~L~~Lg~yq~AVea~~KA----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L----------------------------~ 204 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLHI----------------------------V 204 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCHHHHHHTTTTT----------------------------T
T ss_pred HHHHhccHHHHHHHHHHc----CCchhHHHHHHHHHHcCcHHHHHHHHHHH----------------------------H
Confidence 666666666666666666 25666666666666666666663322211 1
Q ss_pred CCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHh--cccccCcccccccch
Q 042593 261 VLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLI--NSYFFSPITLNSQRL 325 (352)
Q Consensus 261 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~--~g~~~~a~~~~~~~~ 325 (352)
. ++.-...++..|.+.|++++|..+++..... +-....|+-|...|++ -++..+.++.+..++
T Consensus 205 ~--~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i 270 (449)
T 1b89_A 205 V--HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV 270 (449)
T ss_dssp T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS
T ss_pred h--CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 1 2222334666677777777777666665544 4455555555555543 344445555555443
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.64 E-value=1.2e-14 Score=125.30 Aligned_cols=253 Identities=9% Similarity=-0.089 Sum_probs=193.1
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CC-chhHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RN-LVTWNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~~i~~ 99 (352)
+...+..+...+.+.|++++|.+.++.+.+.. +.+..++..+...+...|++++|.+.++++.+ |+ ...+..+...
T Consensus 54 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 132 (327)
T 3cv0_A 54 REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA 132 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH
Confidence 66788889999999999999999999999875 55788899999999999999999999998764 22 2221110000
Q ss_pred HH---hHHHH-HH-HHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhh
Q 042593 100 LV---KWTGI-ID-GYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHV 174 (352)
Q Consensus 100 ~~---~~~~l-i~-~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 174 (352)
.. ....+ .. .+...|++++|...++++.. .. +.+..++..+...+.+.|++++|...++++.+.... +..+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~ 208 (327)
T 3cv0_A 133 DVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE-MN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD--DAQL 208 (327)
T ss_dssp -------------CCTTSHHHHHHHHHHHHHHHH-HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHH
T ss_pred HHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh-hC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--cHHH
Confidence 00 00001 22 37788999999999999944 32 236678999999999999999999999999887543 7888
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHhccCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHH
Q 042593 175 SNCLIDTYAKCGCIFSASKLFEDTSVDR-KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFD 253 (352)
Q Consensus 175 ~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~ 253 (352)
+..+..++...|++++|.+.|++..... .+...+..+...+...|++++|...+++..+.........
T Consensus 209 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~----------- 277 (327)
T 3cv0_A 209 WNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPT----------- 277 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccc-----------
Confidence 9999999999999999999999976654 4688899999999999999999999999887432211000
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 254 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
.......+...+..+..++.+.|+.++|..++++....
T Consensus 278 ---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 278 ---GEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp ------CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred ---ccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 00000114678899999999999999999999876543
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.63 E-value=6.9e-14 Score=118.94 Aligned_cols=194 Identities=7% Similarity=-0.032 Sum_probs=104.9
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCC-chhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLV 101 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~ 101 (352)
+..++..+...+...++.++|.+.++.+...+..| +...+..+..++...|++++|++.+++ ..+...
T Consensus 64 ~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~--------- 132 (291)
T 3mkr_A 64 ELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLEC--------- 132 (291)
T ss_dssp HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHH---------
T ss_pred hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHH---------
Confidence 44555555566666666666666666665554333 334445555566666666666666665 223333
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhH---HHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHH
Q 042593 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI---LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178 (352)
Q Consensus 102 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 178 (352)
+..+...+.+.|++++|.+.|+++... .|+.... ..++..+...|++++|..+++++.+... .+...++.+
T Consensus 133 -~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p--~~~~~~~~l 206 (291)
T 3mkr_A 133 -MAMTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS--PTLLLLNGQ 206 (291)
T ss_dssp -HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC--CCHHHHHHH
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC--CcHHHHHHH
Confidence 555555666666666666666666322 2332211 1122223334566666666666665522 255566666
Q ss_pred HHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHH-HHHHHHHHHh
Q 042593 179 IDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKE-AVENFERMQK 233 (352)
Q Consensus 179 i~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~ 233 (352)
..++.+.|++++|.+.|++.....| +..++..++..+...|+.++ +.++++++.+
T Consensus 207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 6666666666666666666444333 45556666666666666543 4455555554
No 28
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.63 E-value=2.4e-14 Score=118.95 Aligned_cols=229 Identities=7% Similarity=-0.024 Sum_probs=189.8
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCc-hhHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNL-VTWNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~-~~~~~~i~~ 99 (352)
....+..+...+...|++++|...++...+.. .+...+..+..++...|++++|.+.+++..+ |+. ..+......
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 34578889999999999999999999999988 7889999999999999999999999998765 211 011100111
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHH
Q 042593 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179 (352)
Q Consensus 100 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 179 (352)
|..+...+...|++++|...|++.... .|+. ..+.+.|++++|...++.+.+.... +...+..+.
T Consensus 82 ---~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~ 146 (258)
T 3uq3_A 82 ---FARIGNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVNPE--KAEEARLEG 146 (258)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHH
T ss_pred ---HHHHHHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc--hHHHHHHHH
Confidence 889999999999999999999999442 3442 4566778899999999999886433 778899999
Q ss_pred HHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHh
Q 042593 180 DTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEE 258 (352)
Q Consensus 180 ~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~ 258 (352)
.++...|++++|.+.|++.... +.+...|..+..++...|++++|...+++..+..
T Consensus 147 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----------------------- 203 (258)
T 3uq3_A 147 KEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD----------------------- 203 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----------------------
Confidence 9999999999999999998665 4468889999999999999999999999988742
Q ss_pred cCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 259 CEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 259 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
+.+...+..+..++.+.|++++|.+.+++....
T Consensus 204 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 204 ---PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 225778889999999999999999999887654
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.62 E-value=1e-14 Score=127.89 Aligned_cols=261 Identities=10% Similarity=0.007 Sum_probs=145.3
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHh
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~ 102 (352)
|...|..++.++...|++++|...++..++. .+++.+.+.|+.+|.+.|++++++++++. |+..+
T Consensus 60 D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a---------- 124 (449)
T 1b89_A 60 DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAH---------- 124 (449)
T ss_dssp ---------------------------------------------------CHHHHTTTTTC---C--------------
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHH----------
Confidence 8889999999999999999999987777664 45688899999999999999999988864 66666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
|+.+...|...|++++|...|..+ ..|..+..++.+.|++++|.+.+..+ . ++.+|..++.+|
T Consensus 125 ~~~IGd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~yq~AVea~~KA------~-~~~~Wk~v~~aC 187 (449)
T 1b89_A 125 IQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA------N-STRTWKEVCFAC 187 (449)
T ss_dssp ------------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHH------T-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh----------hhHHHHHHHHHHhccHHHHHHHHHHc------C-CchhHHHHHHHH
Confidence 999999999999999999999988 27999999999999999999999987 2 789999999999
Q ss_pred HhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh----------hHhHHHHH
Q 042593 183 AKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI----------GEEGLKFF 252 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----------~~~a~~~~ 252 (352)
...|+++.|..+...+. ..|+ -...++..|.+.|++++|..+++...... +.....|. ++...+.+
T Consensus 188 v~~~ef~lA~~~~l~L~-~~ad--~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl 263 (449)
T 1b89_A 188 VDGKEFRLAQMCGLHIV-VHAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHL 263 (449)
T ss_dssp HHTTCHHHHHHTTTTTT-TCHH--HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHH-hCHh--hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999988777653 3343 34468899999999999999999987543 22222232 55555555
Q ss_pred HHHHHhcCCCC------ChhhHHHHHHHHHHcCChhHHHHHHhcC-CC------------CCCCchhhHHHHHHHHhccc
Q 042593 253 DKMVEECEVLP------DIKHYGCLIDILERAGRLEQAEEVASGI-PS------------QITNVVVWRTGFLRLLINSY 313 (352)
Q Consensus 253 ~~m~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~------------~~~~~~~~~~li~~~~~~g~ 313 (352)
+....+-+++| +...|.-++-.|...|+++.|....-+- .. +..|...|-..+.-|+ +.
T Consensus 264 ~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~ 341 (449)
T 1b89_A 264 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EF 341 (449)
T ss_dssp HHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hc
Confidence 54444434555 5678999999999999999887765433 22 1345666666666666 34
Q ss_pred ccCccccc
Q 042593 314 FFSPITLN 321 (352)
Q Consensus 314 ~~~a~~~~ 321 (352)
...++.-+
T Consensus 342 ~p~~l~~l 349 (449)
T 1b89_A 342 KPLLLNDL 349 (449)
T ss_dssp CGGGHHHH
T ss_pred CHHHHHHH
Confidence 44444333
No 30
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.61 E-value=1.7e-13 Score=113.71 Aligned_cols=197 Identities=10% Similarity=-0.066 Sum_probs=170.2
Q ss_pred cccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--C-CchhHHHHHHHH
Q 042593 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--R-NLVTWNVIITGL 100 (352)
Q Consensus 24 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~~i~~~ 100 (352)
...+..+...+...|++++|.+.++.+.+.. +.+...+..+...|...|++++|.+.|+++.+ | +...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------- 107 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARV-------- 107 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH--------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHH--------
Confidence 5678888889999999999999999999875 55788899999999999999999999998764 3 3333
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHH
Q 042593 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS-EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179 (352)
Q Consensus 101 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 179 (352)
|..+...+...|++++|.+.++++ ...+..|+ ...+..+...+...|++++|...+++..+.... +...+..+.
T Consensus 108 --~~~la~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~la 182 (252)
T 2ho1_A 108 --LNNYGGFLYEQKRYEEAYQRLLEA-SQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN--QPSVALEMA 182 (252)
T ss_dssp --HHHHHHHHHHTTCHHHHHHHHHHH-TTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHH
T ss_pred --HHHHHHHHHHHhHHHHHHHHHHHH-HhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc--cHHHHHHHH
Confidence 888889999999999999999999 43334454 457888999999999999999999999887643 688899999
Q ss_pred HHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 180 DTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 180 ~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
.++...|++++|.+.++..... +.+...+..+...+...|+.++|.+.++++.+.
T Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 183 DLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999999999999998766 456778888999999999999999999999875
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=3.7e-14 Score=115.29 Aligned_cols=193 Identities=13% Similarity=0.040 Sum_probs=157.1
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CC-chhHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RN-LVTWNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~~i~~ 99 (352)
+...+..+...+.+.|++++|...++...+.. +.+...+..+..++.+.|++++|+..|++..+ |+ ...
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a------- 75 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGG------- 75 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH-------
Confidence 78889999999999999999999999998876 56788999999999999999999999999875 43 334
Q ss_pred HHhHHHHHHHHHhc-----------CCHHHHHHHHHHhHhccCCCCC-hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCC
Q 042593 100 LVKWTGIIDGYSRM-----------NRSNEALALFRRMAACEYTEPS-EITILAVLPAIWKNGEVRNCQLIHGYGEKRGF 167 (352)
Q Consensus 100 ~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 167 (352)
|..+...+... |++++|+..|++..+. .|+ ...+..+..++...|++++|...+++..+..
T Consensus 76 ---~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 148 (217)
T 2pl2_A 76 ---YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE- 148 (217)
T ss_dssp ---HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred ---HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-
Confidence 77888888888 9999999999999442 344 5688899999999999999999999999988
Q ss_pred CCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042593 168 NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQ 232 (352)
Q Consensus 168 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 232 (352)
. +...+..+..+|...|++++|...|++.....| +...+..+...+...|++++|...+++..
T Consensus 149 -~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 149 -D-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp -C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred -c-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 4 889999999999999999999999999876655 67889999999999999999999998754
No 32
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=1.4e-13 Score=111.71 Aligned_cols=198 Identities=14% Similarity=-0.053 Sum_probs=170.4
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--C-CchhHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--R-NLVTWNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~~i~~ 99 (352)
+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...+...|++++|.+.+++..+ | +...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~------- 78 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEI------- 78 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH-------
Confidence 56788889999999999999999999999876 55678899999999999999999999998864 3 3334
Q ss_pred HHhHHHHHHHHHhc-CCHHHHHHHHHHhHhccCCCCC-hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHH
Q 042593 100 LVKWTGIIDGYSRM-NRSNEALALFRRMAACEYTEPS-EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177 (352)
Q Consensus 100 ~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 177 (352)
|..+...+... |++++|...++++.. .+..|+ ...+..+..++...|++++|...++++.+.... +...+..
T Consensus 79 ---~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~ 152 (225)
T 2vq2_A 79 ---NNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ--FPPAFKE 152 (225)
T ss_dssp ---HHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHH
T ss_pred ---HHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CchHHHH
Confidence 88888999999 999999999999944 333344 467889999999999999999999999887543 6888999
Q ss_pred HHHHHHhhCChHHHHHHHHHhccC-C-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 178 LIDTYAKCGCIFSASKLFEDTSVD-R-KNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 178 li~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
+..++.+.|++++|.+.+++.... + .+...+..+...+...|+.++|..+++.+.+.
T Consensus 153 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 153 LARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999999999999997655 4 57788888888899999999999999998764
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.58 E-value=9.7e-14 Score=112.78 Aligned_cols=199 Identities=15% Similarity=0.038 Sum_probs=99.9
Q ss_pred CCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC-
Q 042593 56 QSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP- 134 (352)
Q Consensus 56 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p- 134 (352)
|+++..+..+...+.+.|++++|...|++..+.++..... |..+...+.+.|++++|+..|++.... .|
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a-------~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~ 71 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEA-------LYWLARTQLKLGLVNPALENGKTLVAR---TPR 71 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC
Confidence 4455566666666666666666666666654422211111 555666666666666666666666332 23
Q ss_pred ChhhHHHHHHHHHhC-----------CChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC
Q 042593 135 SEITILAVLPAIWKN-----------GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203 (352)
Q Consensus 135 ~~~t~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 203 (352)
+...+..+..++... |++++|...++...+.... +...+..+..+|...|++++|...|++......
T Consensus 72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 149 (217)
T 2pl2_A 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR--YAPLHLQRGLVYALLGERDKAEASLKQALALED 149 (217)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhccc
Confidence 234555556666665 6666666666665555332 455555555666666666666666655432224
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhH
Q 042593 204 NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQ 283 (352)
Q Consensus 204 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 283 (352)
+...+..+..+|...|++++|...|++..+.. | -+...+..+..++.+.|+.++
T Consensus 150 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--P------------------------~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 150 TPEIRSALAELYLSMGRLDEALAQYAKALEQA--P------------------------KDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--T------------------------TCHHHHHHHHHHHTC------
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C------------------------CChHHHHHHHHHHHHccCHHH
Confidence 45555555556666666666666666555421 1 134455555555666666666
Q ss_pred HHHHHhcCC
Q 042593 284 AEEVASGIP 292 (352)
Q Consensus 284 A~~~~~~m~ 292 (352)
|...+++..
T Consensus 204 A~~~~~~~~ 212 (217)
T 2pl2_A 204 AARAAALEH 212 (217)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 665555443
No 34
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=2e-13 Score=113.17 Aligned_cols=203 Identities=8% Similarity=-0.067 Sum_probs=161.4
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHhccCCC--C-CchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC
Q 042593 59 VYVNTALGDMYVSLGFLKDSSKLFDELPE--R-NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS 135 (352)
Q Consensus 59 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 135 (352)
...+..+...+...|++++|.+.|+++.+ | +... |..+...+...|++++|.+.|+++.... +.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~----------~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~ 104 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADA----------HAALAVVFQTEMEPKLADEEYRKALASD--SRN 104 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHH----------HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCc
Confidence 56788888899999999999999998764 3 3333 7888888999999999999999984432 235
Q ss_pred hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHH
Q 042593 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISG 214 (352)
Q Consensus 136 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~ 214 (352)
...+..+...+...|++++|...++++.+.+..|.+...+..+..++...|++++|.+.|++.....| +...+..+...
T Consensus 105 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 184 (252)
T 2ho1_A 105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADL 184 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 66788888899999999999999999887333443677888888999999999999999988765544 57888888999
Q ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 215 FAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 215 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
+...|++++|...+++..+. .+.+...+..+...+.+.|+.++|.+.++++...
T Consensus 185 ~~~~g~~~~A~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 185 LYKEREYVPARQYYDLFAQG--------------------------GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHTT--------------------------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--------------------------CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999988763 2235667788888899999999999998887655
Q ss_pred CCCch
Q 042593 295 ITNVV 299 (352)
Q Consensus 295 ~~~~~ 299 (352)
.|+..
T Consensus 239 ~p~~~ 243 (252)
T 2ho1_A 239 YPGSL 243 (252)
T ss_dssp CTTSH
T ss_pred CCCCH
Confidence 34433
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=1.6e-13 Score=115.11 Aligned_cols=249 Identities=8% Similarity=-0.078 Sum_probs=187.3
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchh-HHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVT-WNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~-~~~~i~~ 99 (352)
|...+......+...|++++|...++...+.. +.+...+..+..+|...|++++|.+.|++..+ ++... ..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~---- 76 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSAD---- 76 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHH----
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHH----
Confidence 45567778888999999999999999998865 44666888899999999999999999998765 22211 111
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHH
Q 042593 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179 (352)
Q Consensus 100 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 179 (352)
|..+...+...|++++|...|++..... +.+..++..+...+...|++++|...+++..+.... +...+..+.
T Consensus 77 ---~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l~ 149 (272)
T 3u4t_A 77 ---FEYYGKILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT--DPKVFYELG 149 (272)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC--CHHHHHHHH
T ss_pred ---HHHHHHHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC--cHHHHHHHH
Confidence 7788889999999999999999984432 234568889999999999999999999998877433 677777777
Q ss_pred HHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCC---HHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHH
Q 042593 180 DTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGM---GKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKM 255 (352)
Q Consensus 180 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m 255 (352)
..+...+++++|.+.|++.....| +...+..+..++...|+ +++|...+++..+..
T Consensus 150 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------------------- 209 (272)
T 3u4t_A 150 QAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC-------------------- 209 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH--------------------
Confidence 344445599999999998876655 46777778888887787 788888888877631
Q ss_pred HHhcCCCCC------hhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHH
Q 042593 256 VEECEVLPD------IKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLR 307 (352)
Q Consensus 256 ~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~ 307 (352)
.-.|+ ...|..+...|.+.|++++|.+.+++.... +.+...+..+...
T Consensus 210 ----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 210 ----APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp ----GGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred ----hcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence 11122 257888999999999999999999988766 4455555555443
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.57 E-value=3.2e-14 Score=119.47 Aligned_cols=247 Identities=11% Similarity=-0.063 Sum_probs=189.0
Q ss_pred HHhcCCcchHHHHHHHHHHhCC---CCchhhHHHHHHHHHhcCChhHHHHHhccCCC--C-CchhHHHHHHHHHhHHHHH
Q 042593 34 CVTLSYPNLGTQLHAVFSKVGF---QSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--R-NLVTWNVIITGLVKWTGII 107 (352)
Q Consensus 34 ~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~~i~~~~~~~~li 107 (352)
....|++++|+..++.+.+... +.+..++..+..++...|++++|...|++..+ | +... |..+.
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~----------~~~la 84 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV----------FNYLG 84 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH----------HHHHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHH----------HHHHH
Confidence 3456889999999999988642 22567899999999999999999999999865 3 3344 88899
Q ss_pred HHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCC
Q 042593 108 DGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC 187 (352)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 187 (352)
..+...|++++|...|++..... +.+..++..+..++.+.|++++|...++.+.+.... .......+..+...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~~~~~~~~~~ 159 (275)
T 1xnf_A 85 IYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN---DPFRSLWLYLAEQKLD 159 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHC
T ss_pred HHHHHccCHHHHHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHhcC
Confidence 99999999999999999994432 235678999999999999999999999999887543 3334445556677899
Q ss_pred hHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCC-Ch
Q 042593 188 IFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLP-DI 265 (352)
Q Consensus 188 ~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p-~~ 265 (352)
+++|...+++.... +++...+ .+...+...++.++|...+++..+... ...| +.
T Consensus 160 ~~~A~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~-----------------------~~~~~~~ 215 (275)
T 1xnf_A 160 EKQAKEVLKQHFEKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNT-----------------------SLAEHLS 215 (275)
T ss_dssp HHHHHHHHHHHHHHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHH-----------------------HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccc-----------------------ccccccc
Confidence 99999999776544 3444444 477778888889999999988765310 0111 25
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHHHhcccccCccccc
Q 042593 266 KHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLN 321 (352)
Q Consensus 266 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 321 (352)
..+..+..+|.+.|++++|...+++.... ++..+.....++...|++++|++.+
T Consensus 216 ~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 216 ETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHNFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTTCHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHhhHHHH
Confidence 78889999999999999999999998877 3334555577788999999988765
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=5.8e-14 Score=116.61 Aligned_cols=225 Identities=9% Similarity=-0.024 Sum_probs=189.1
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccC-CCC
Q 042593 58 HVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY-TEP 134 (352)
Q Consensus 58 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~p 134 (352)
....+..+...+...|++++|...|++..+ .+... |..+..++...|++++|...+++...... ..|
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~----------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 73 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITY----------LNNRAAAEYEKGEYETAISTLNDAVEQGREMRA 73 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHH----------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHH----------HHHHHHHHHHcccHHHHHHHHHHHHHhCccccc
Confidence 356788899999999999999999998754 34444 88899999999999999999999844221 122
Q ss_pred C----hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHH
Q 042593 135 S----EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWT 209 (352)
Q Consensus 135 ~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~ 209 (352)
+ ..++..+...+...|++++|...++...+... + ...+.+.|++++|.+.++......| +...+.
T Consensus 74 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 143 (258)
T 3uq3_A 74 DYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR---T-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEAR 143 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---C-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCc---h-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHH
Confidence 3 46888999999999999999999999988643 3 2457778899999999999876655 567788
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHh
Q 042593 210 TIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVAS 289 (352)
Q Consensus 210 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 289 (352)
.+...+...|++++|...+++..+.. +.+...+..+..+|.+.|++++|...++
T Consensus 144 ~~~~~~~~~~~~~~A~~~~~~a~~~~--------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 144 LEGKEYFTKSDWPNAVKAYTEMIKRA--------------------------PEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC--------------------------cccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999999999988742 2367789999999999999999999999
Q ss_pred cCCCC-CCCchhhHHHHHHHHhcccccCcccccccchhhh
Q 042593 290 GIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFF 328 (352)
Q Consensus 290 ~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 328 (352)
+.... +.+...|..+...+...|++++|+..+.+.+...
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 88766 5678899999999999999999999999998776
No 38
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=1.8e-13 Score=111.10 Aligned_cols=209 Identities=10% Similarity=-0.015 Sum_probs=160.6
Q ss_pred CchhhHHHHHHHHHhcCChhHHHHHhccCCC--CC-chhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCC
Q 042593 57 SHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RN-LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTE 133 (352)
Q Consensus 57 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~ 133 (352)
.+...+..+...+...|++++|.+.|++..+ |+ ... |..+...+...|++++|...++++.... +
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~ 73 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELA----------WLVRAEIYQYLKVNDKAQESFRQALSIK--P 73 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH----------HHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHH----------HHHHHHHHHHcCChHHHHHHHHHHHHhC--C
Confidence 3567788888899999999999999988764 32 333 7788888899999999999999884432 2
Q ss_pred CChhhHHHHHHHHHhC-CChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHH
Q 042593 134 PSEITILAVLPAIWKN-GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTI 211 (352)
Q Consensus 134 p~~~t~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l 211 (352)
.+..++..+...+... |++++|...++.+.+.+..|.+...+..+..++...|++++|.+.|++.....| +...+..+
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 153 (225)
T 2vq2_A 74 DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKEL 153 (225)
T ss_dssp TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 3566788888889999 999999999998888433343567888888999999999999999988765544 57888888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcC
Q 042593 212 ISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGI 291 (352)
Q Consensus 212 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 291 (352)
...+...|++++|...+++..+.. | ..+...+..+...+...|+.+.|...++.+
T Consensus 154 a~~~~~~~~~~~A~~~~~~~~~~~--~-----------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 154 ARTKMLAGQLGDADYYFKKYQSRV--E-----------------------VLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHH--C-----------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--C-----------------------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 889999999999999998887631 1 135566777788888899999998888877
Q ss_pred CCCCCCchhhH
Q 042593 292 PSQITNVVVWR 302 (352)
Q Consensus 292 ~~~~~~~~~~~ 302 (352)
....|+.....
T Consensus 209 ~~~~p~~~~~~ 219 (225)
T 2vq2_A 209 QANFPYSEELQ 219 (225)
T ss_dssp HHHCTTCHHHH
T ss_pred HHhCCCCHHHH
Confidence 54434444433
No 39
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=1.1e-13 Score=114.02 Aligned_cols=198 Identities=11% Similarity=0.037 Sum_probs=153.4
Q ss_pred CCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--C-CchhHHHHHH
Q 042593 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--R-NLVTWNVIIT 98 (352)
Q Consensus 22 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~~i~ 98 (352)
.+...|..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.|++..+ | +...
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------ 93 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATA------ 93 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH------
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHH------
Confidence 467888889999999999999999999998865 55788899999999999999999999998764 3 3334
Q ss_pred HHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHH
Q 042593 99 GLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178 (352)
Q Consensus 99 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 178 (352)
|..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|...++++.+.... +...+..+
T Consensus 94 ----~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l 165 (243)
T 2q7f_A 94 ----YYGAGNVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN--DTEARFQF 165 (243)
T ss_dssp ----HHHHHHHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred ----HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc--cHHHHHHH
Confidence 8888899999999999999999984432 245678889999999999999999999999887544 78889999
Q ss_pred HHHHHhhCChHHHHHHHHHhccCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 179 IDTYAKCGCIFSASKLFEDTSVDR-KNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 179 i~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
..++.+.|++++|.+.|++..... .+..++..+..+|...|++++|...+++..+.
T Consensus 166 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 166 GMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999999999976654 46788999999999999999999999999874
No 40
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=2.5e-13 Score=113.93 Aligned_cols=241 Identities=9% Similarity=-0.054 Sum_probs=189.7
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHhccCCC--C-CchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC
Q 042593 58 HVYVNTALGDMYVSLGFLKDSSKLFDELPE--R-NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134 (352)
Q Consensus 58 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p 134 (352)
|+..+......+...|++++|+..|++..+ | +... |..+...+...|++++|+..+++... .+..|
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~----------~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~ 70 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYI----------YNRRAVCYYELAKYDLAQKDIETYFS-KVNAT 70 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTT----------HHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTT
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH----------HHHHHHHHHHHhhHHHHHHHHHHHHh-ccCch
Confidence 344556678888999999999999999764 3 3445 88888899999999999999999944 33223
Q ss_pred Ch--hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHH
Q 042593 135 SE--ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTI 211 (352)
Q Consensus 135 ~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l 211 (352)
+. ..|..+...+...|++++|...++...+.... +..++..+..+|...|++++|.+.|++.....| +...|..+
T Consensus 71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 148 (272)
T 3u4t_A 71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT--RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYEL 148 (272)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHH
Confidence 32 24889999999999999999999999987654 778999999999999999999999999877654 56777777
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC---hhHHHHHH
Q 042593 212 ISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGR---LEQAEEVA 288 (352)
Q Consensus 212 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~ 288 (352)
...+...+++++|...|++..+.. +.+...+..+..++...|+ .++|...+
T Consensus 149 ~~~~~~~~~~~~A~~~~~~a~~~~--------------------------p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 202 (272)
T 3u4t_A 149 GQAYYYNKEYVKADSSFVKVLELK--------------------------PNIYIGYLWRARANAAQDPDTKQGLAKPYY 202 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHHSTTCSSCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC--------------------------ccchHHHHHHHHHHHHcCcchhhHHHHHHH
Confidence 734444569999999999988732 1246677778888888888 77788777
Q ss_pred hcCCCC---CCCc------hhhHHHHHHHHhcccccCcccccccchhhhhhHHHHhhh
Q 042593 289 SGIPSQ---ITNV------VVWRTGFLRLLINSYFFSPITLNSQRLFFFPAALYALTQ 337 (352)
Q Consensus 289 ~~m~~~---~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 337 (352)
++.... .|+. .+|..+...|...|++++|+..+.+.+...|..-.+...
T Consensus 203 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 260 (272)
T 3u4t_A 203 EKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDG 260 (272)
T ss_dssp HHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHH
Confidence 766544 2332 578889999999999999999999999888877555443
No 41
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.55 E-value=1.9e-13 Score=120.29 Aligned_cols=249 Identities=12% Similarity=0.003 Sum_probs=199.9
Q ss_pred cccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCC-hhHHHHHhccCCCCCchhHHHHHHHHHh
Q 042593 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF-LKDSSKLFDELPERNLVTWNVIITGLVK 102 (352)
Q Consensus 24 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~i~~~~~ 102 (352)
...|+.+..++.+.|++++|++.++..++.. +-+...|+.+..++...|+ +++|+..|++..+-++..+.+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a------- 168 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV------- 168 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH-------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH-------
Confidence 4578888889999999999999999999876 5567889999999999997 999999999987633222222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
|+.+..++...|++++|+..|+++.... +-+...|..+..++.+.|++++|...++++.+.... +...|+.+..++
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~--~~~a~~~lg~~l 244 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR--NNSVWNQRYFVI 244 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Confidence 8889999999999999999999995532 235668999999999999999999999999998765 889999999999
Q ss_pred Hh-hCChHHH-----HHHHHHhccCCC-CHhhHHHHHHHHHcCC--CHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHH
Q 042593 183 AK-CGCIFSA-----SKLFEDTSVDRK-NLVSWTTIISGFAMHG--MGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFD 253 (352)
Q Consensus 183 ~~-~g~~~~a-----~~~~~~~~~~~~-~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~ 253 (352)
.+ .|..++| ++.|++.....| +...|+.+...+...| ++++|.+.+.++ +
T Consensus 245 ~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-------------------- 303 (382)
T 2h6f_A 245 SNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-------------------- 303 (382)
T ss_dssp HHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--------------------
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--------------------
Confidence 99 6665777 477877655544 6788999998899888 688998888876 3
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHHcC--------C-hhHHHHHHhcC-CCC-CCCchhhHHHHHHHHhc
Q 042593 254 KMVEECEVLPDIKHYGCLIDILERAG--------R-LEQAEEVASGI-PSQ-ITNVVVWRTGFLRLLIN 311 (352)
Q Consensus 254 ~m~~~~~~~p~~~~~~~li~~~~~~g--------~-~~~A~~~~~~m-~~~-~~~~~~~~~li~~~~~~ 311 (352)
..+.+...+..+..+|.+.| + .++|.++++++ ... +.....|..+...+...
T Consensus 304 ------~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 304 ------PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp ------TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred ------cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 22236778888999998874 2 58999999998 555 44556777777666543
No 42
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=1.3e-13 Score=115.80 Aligned_cols=221 Identities=10% Similarity=-0.085 Sum_probs=174.4
Q ss_pred CCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--C-CchhHHHHHH
Q 042593 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--R-NLVTWNVIIT 98 (352)
Q Consensus 22 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~~i~ 98 (352)
.+..++..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|.+.|++..+ | +...
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~------ 113 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYA------ 113 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHH------
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHH------
Confidence 357789999999999999999999999999876 55788999999999999999999999999875 4 3444
Q ss_pred HHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHH
Q 042593 99 GLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178 (352)
Q Consensus 99 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 178 (352)
|..+...+...|++++|...|+++.. ..|+.......+..+...|+.++|...++........ +...+ .+
T Consensus 114 ----~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~-~~ 183 (275)
T 1xnf_A 114 ----HLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK--EQWGW-NI 183 (275)
T ss_dssp ----HHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC--CSTHH-HH
T ss_pred ----HHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--chHHH-HH
Confidence 88899999999999999999999944 2355555555556667789999999999888776433 44444 47
Q ss_pred HHHHHhhCChHHHHHHHHHhccCCCC-----HhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHH
Q 042593 179 IDTYAKCGCIFSASKLFEDTSVDRKN-----LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFD 253 (352)
Q Consensus 179 i~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~ 253 (352)
+..+...++.++|.+.++......|+ ...+..+...|...|++++|...|++..+.. |+
T Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-------------- 247 (275)
T 1xnf_A 184 VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VH-------------- 247 (275)
T ss_dssp HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CT--------------
T ss_pred HHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--ch--------------
Confidence 77888888999999999998766442 5788999999999999999999999988642 21
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHH
Q 042593 254 KMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVA 288 (352)
Q Consensus 254 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 288 (352)
+ +.....++...|++++|.+.+
T Consensus 248 ----------~---~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 ----------N---FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ----------T---CHHHHHHHHHHHHHHHC----
T ss_pred ----------h---HHHHHHHHHHHHHHHhhHHHH
Confidence 2 223355667778888877665
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=1e-13 Score=114.15 Aligned_cols=210 Identities=10% Similarity=0.006 Sum_probs=142.3
Q ss_pred CchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh
Q 042593 57 SHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE 136 (352)
Q Consensus 57 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 136 (352)
.+..+|..+...+...|++++|...|++..+.++..... +..+...+...|++++|...+++..... +.+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~-------~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~ 91 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIP-------YINFANLLSSVNELERALAFYDKALELD--SSAA 91 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHcC--Ccch
Confidence 355677778888888899999988888876522211111 7778888888999999999998884432 2356
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHH
Q 042593 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGF 215 (352)
Q Consensus 137 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~ 215 (352)
.++..+...+...|++++|...++++.+.... +...+..+..++.+.|++++|.+.+++.... +.+...+..+...+
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAGME--NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCL 169 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC--SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 67888888888899999999999888877543 6777888888889999999999999887655 34677888888888
Q ss_pred HcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-
Q 042593 216 AMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ- 294 (352)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 294 (352)
...|++++|...+++..+.. +.+..++..+..+|.+.|++++|.+.++++...
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~--------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 170 ANEGMLDEALSQFAAVTEQD--------------------------PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHTCCHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC--------------------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 88999999998888877631 225667888888888999999998888877655
Q ss_pred CCCchhhHH
Q 042593 295 ITNVVVWRT 303 (352)
Q Consensus 295 ~~~~~~~~~ 303 (352)
+.+...+..
T Consensus 224 p~~~~~~~~ 232 (243)
T 2q7f_A 224 PDHMLALHA 232 (243)
T ss_dssp TTCHHHHHH
T ss_pred cchHHHHHH
Confidence 333344433
No 44
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=2.9e-13 Score=120.12 Aligned_cols=276 Identities=9% Similarity=-0.016 Sum_probs=199.0
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCc----hhhHHHHHHHHHhcCChhHHHHHhccCCC-----CCchhH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSH----VYVNTALGDMYVSLGFLKDSSKLFDELPE-----RNLVTW 93 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~ 93 (352)
....+......+...|++++|...++...+.+ +.+ ...+..+...|...|++++|...+++..+ .+...
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~- 85 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG- 85 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH-
Confidence 56667778888999999999999999999875 223 35788899999999999999999988643 11111
Q ss_pred HHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC----hhhHHHHHHHHHhCCC------------------
Q 042593 94 NVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS----EITILAVLPAIWKNGE------------------ 151 (352)
Q Consensus 94 ~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~t~~~ll~~~~~~~~------------------ 151 (352)
.... |..+...+...|++++|...+++......-.++ ..++..+...+...|+
T Consensus 86 ~~~~-----~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~ 160 (406)
T 3sf4_A 86 EAKA-----SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR 160 (406)
T ss_dssp HHHH-----HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHH
T ss_pred HHHH-----HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHH
Confidence 1111 888889999999999999999987433221122 3478888889999999
Q ss_pred --hhhHHHHHHHHHhc----CCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC---CCC----HhhHHHHHHHHHcC
Q 042593 152 --VRNCQLIHGYGEKR----GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD---RKN----LVSWTTIISGFAMH 218 (352)
Q Consensus 152 --~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~~~li~~~~~~ 218 (352)
+++|...+++..+. +..+....++..+..+|...|++++|.+.+++.... .++ ..++..+...|...
T Consensus 161 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 240 (406)
T 3sf4_A 161 DALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL 240 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 99999888876543 222213567888999999999999999999986543 222 34788889999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCChhHHHHHHhcCCCC---
Q 042593 219 GMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLP-DIKHYGCLIDILERAGRLEQAEEVASGIPSQ--- 294 (352)
Q Consensus 219 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 294 (352)
|++++|...+++..+..... +..+ ...++..+...|...|++++|...+++....
T Consensus 241 g~~~~A~~~~~~al~~~~~~---------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 241 GEFETASEYYKKTLLLARQL---------------------KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHT---------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhC---------------------cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence 99999999999977531100 1111 1445666777777777777777776655433
Q ss_pred CCC----chhhHHHHHHHHhcccccCcccccccchh
Q 042593 295 ITN----VVVWRTGFLRLLINSYFFSPITLNSQRLF 326 (352)
Q Consensus 295 ~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 326 (352)
.++ ..++..+...|...|++++|+..+.+.+.
T Consensus 300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111 44666667777777777777777776654
No 45
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=8.5e-12 Score=115.26 Aligned_cols=71 Identities=14% Similarity=0.025 Sum_probs=57.7
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNV 95 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~ 95 (352)
|...|..++. +.+.|+++.|..+|+.+.+.. |.+...|..++..+.+.|++++|..+|++..+ |+...|..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~ 84 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKC 84 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHH
Confidence 6677888887 477899999999999998764 55777899999999999999999999999875 65544443
No 46
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.50 E-value=6e-14 Score=120.92 Aligned_cols=276 Identities=9% Similarity=-0.017 Sum_probs=206.9
Q ss_pred cccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCc----hhhHHHHHHHHHhcCChhHHHHHhccCCC-----CCchhHH
Q 042593 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSH----VYVNTALGDMYVSLGFLKDSSKLFDELPE-----RNLVTWN 94 (352)
Q Consensus 24 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~ 94 (352)
...+......+...|++++|...++.+.+.. +.+ ...+..+...+...|++++|.+.+++..+ ++... .
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~ 82 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG-E 82 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHH-H
Confidence 3455666778889999999999999999875 223 36788999999999999999999988653 22111 1
Q ss_pred HHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC----hhhHHHHHHHHHhCCC-------------------
Q 042593 95 VIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS----EITILAVLPAIWKNGE------------------- 151 (352)
Q Consensus 95 ~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~t~~~ll~~~~~~~~------------------- 151 (352)
..+ +..+...+...|++++|...+++......-.++ ..++..+...+...|+
T Consensus 83 ~~~-----~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 157 (338)
T 3ro2_A 83 AKA-----SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN 157 (338)
T ss_dssp HHH-----HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH
T ss_pred HHH-----HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH
Confidence 111 888889999999999999999987433221223 3378888888999999
Q ss_pred -hhhHHHHHHHHHhc----CCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC---CCC----HhhHHHHHHHHHcCC
Q 042593 152 -VRNCQLIHGYGEKR----GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD---RKN----LVSWTTIISGFAMHG 219 (352)
Q Consensus 152 -~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~~~li~~~~~~~ 219 (352)
+++|...+++..+. +..+....++..+...+...|++++|.+.+++.... .++ ..++..+...+...|
T Consensus 158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g 237 (338)
T 3ro2_A 158 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 237 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC
Confidence 99999888876543 222213567888999999999999999999986543 122 347888889999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCC-CChhhHHHHHHHHHHcCChhHHHHHHhcCCCC---C
Q 042593 220 MGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVL-PDIKHYGCLIDILERAGRLEQAEEVASGIPSQ---I 295 (352)
Q Consensus 220 ~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~ 295 (352)
++++|...+++..+... .. +.. ....++..+...|...|++++|...+++.... .
T Consensus 238 ~~~~A~~~~~~al~~~~--------------------~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 238 EFETASEYYKKTLLLAR--------------------QL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp CHHHHHHHHHHHHHHHH--------------------HT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH--------------------hh-cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 99999999998775310 00 111 12557788899999999999999998876543 1
Q ss_pred CC----chhhHHHHHHHHhcccccCcccccccchhh
Q 042593 296 TN----VVVWRTGFLRLLINSYFFSPITLNSQRLFF 327 (352)
Q Consensus 296 ~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 327 (352)
.+ ..++..+...|...|++++|...+.+.+..
T Consensus 297 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 297 KDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 11 447788899999999999999988887643
No 47
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=1.1e-13 Score=123.34 Aligned_cols=278 Identities=11% Similarity=0.008 Sum_probs=208.3
Q ss_pred cccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCch----hhHHHHHHHHHhcCChhHHHHHhccCCC-----CCchhHH
Q 042593 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHV----YVNTALGDMYVSLGFLKDSSKLFDELPE-----RNLVTWN 94 (352)
Q Consensus 24 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~ 94 (352)
...+..+...+...|++++|...++.+.+.+ +.+. ..+..+...|...|++++|...|++..+ .+.. ..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~ 125 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL-GE 125 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH-HH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch-HH
Confidence 3445566678889999999999999999875 2233 4788999999999999999999988753 1111 11
Q ss_pred HHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhcc---CCCC-ChhhHHHHHHHHHhCCC-----------------hh
Q 042593 95 VIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE---YTEP-SEITILAVLPAIWKNGE-----------------VR 153 (352)
Q Consensus 95 ~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~p-~~~t~~~ll~~~~~~~~-----------------~~ 153 (352)
... +..+...|...|++++|...+++..... +-.| ...++..+...+...|+ ++
T Consensus 126 ~~~-----~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~ 200 (411)
T 4a1s_A 126 AKS-----SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALT 200 (411)
T ss_dssp HHH-----HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHH
Confidence 111 8889999999999999999999874321 1112 23478888899999999 99
Q ss_pred hHHHHHHHHHhc----CCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCC---CC----HhhHHHHHHHHHcCCCHH
Q 042593 154 NCQLIHGYGEKR----GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR---KN----LVSWTTIISGFAMHGMGK 222 (352)
Q Consensus 154 ~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~----~~~~~~li~~~~~~~~~~ 222 (352)
+|...+++..+. +..+....++..+..+|...|++++|.+.+++..... ++ ...+..+...|...|+++
T Consensus 201 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (411)
T 4a1s_A 201 RAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFE 280 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHH
Confidence 999888876543 2222144688889999999999999999999875442 22 247888999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC---CC---
Q 042593 223 EAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ---IT--- 296 (352)
Q Consensus 223 ~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~--- 296 (352)
+|...+++..+... ..........++..+...|...|++++|...+++.... .+
T Consensus 281 ~A~~~~~~al~~~~--------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 340 (411)
T 4a1s_A 281 DAAEHYKRTLALAV--------------------ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI 340 (411)
T ss_dssp HHHHHHHHHHHHHH--------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHH--------------------HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence 99999998776310 00011113567888999999999999999999876544 11
Q ss_pred -CchhhHHHHHHHHhcccccCcccccccchhhh
Q 042593 297 -NVVVWRTGFLRLLINSYFFSPITLNSQRLFFF 328 (352)
Q Consensus 297 -~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 328 (352)
...++..+...|...|++++|...+.+.+..+
T Consensus 341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 341 GEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 23478888999999999999999999886543
No 48
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=4.1e-12 Score=115.34 Aligned_cols=290 Identities=11% Similarity=-0.061 Sum_probs=202.8
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHh-----C---CCCchhhHHHHHHHHHhcCChhHHHHHhccCCC-------
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKV-----G---FQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE------- 87 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~------- 87 (352)
....||.+..++...|+.++|++.|++..+. + .+....+|+.+..+|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 6778999999999999999999999987652 1 122456899999999999999999998887642
Q ss_pred C-CchhHHHHHHHHHhHHHHHHHHHh--cCCHHHHHHHHHHhHhccCCCCCh-hhHHHHHHH---HHhCCChhhHHHHHH
Q 042593 88 R-NLVTWNVIITGLVKWTGIIDGYSR--MNRSNEALALFRRMAACEYTEPSE-ITILAVLPA---IWKNGEVRNCQLIHG 160 (352)
Q Consensus 88 ~-~~~~~~~~i~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~p~~-~t~~~ll~~---~~~~~~~~~a~~~~~ 160 (352)
+ +...-.+ ++.+..++.. .+++++|...|++.... .|+. ..+..+..+ +...++.++|...++
T Consensus 130 ~~~~~~~~~-------~~~~g~~~~~~~~~~y~~A~~~~~kal~~---~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~ 199 (472)
T 4g1t_A 130 PYRIESPEL-------DCEEGWTRLKCGGNQNERAKVCFEKALEK---KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLR 199 (472)
T ss_dssp SSCCCCHHH-------HHHHHHHHHHHCTTHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHH
T ss_pred ccchhhHHH-------HHHHHHHHHHHccccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 1 1111111 4444444444 45799999999998553 3443 344444433 456688889999999
Q ss_pred HHHhcCCCCCchhhHHHHHHHHHh----hCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 042593 161 YGEKRGFNAFDIHVSNCLIDTYAK----CGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 235 (352)
+..+.... +..++..+...+.. .|+.++|.+.+++.... +.+...+..+...|...|++++|...+++..+.
T Consensus 200 ~al~l~p~--~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~- 276 (472)
T 4g1t_A 200 QAIRLNPD--NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY- 276 (472)
T ss_dssp HHHHHCSS--CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHhhcCCc--chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh-
Confidence 88877544 66666666655554 46788999999887655 456788999999999999999999999998875
Q ss_pred CCCCcchhh-------------------------------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHH
Q 042593 236 LKPNRSWRI-------------------------------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQA 284 (352)
Q Consensus 236 ~~p~~~~~~-------------------------------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 284 (352)
.|+..... .+.|...+++..+. -+.+...+..+...|...|++++|
T Consensus 277 -~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 277 -IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEA 353 (472)
T ss_dssp -STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHH
T ss_pred -CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHH
Confidence 35433221 45667777776654 223566788899999999999999
Q ss_pred HHHHhcCCCCCCCch----hhHHHHH-HHHhcccccCcccccccchhhh
Q 042593 285 EEVASGIPSQITNVV----VWRTGFL-RLLINSYFFSPITLNSQRLFFF 328 (352)
Q Consensus 285 ~~~~~~m~~~~~~~~----~~~~li~-~~~~~g~~~~a~~~~~~~~~~~ 328 (352)
.+.|++.....|+.. .+..+.. .+...|++++|+..+.+.+...
T Consensus 354 ~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~ 402 (472)
T 4g1t_A 354 EYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN 402 (472)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999988765422222 1222222 2346788889988887776533
No 49
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.47 E-value=3e-11 Score=101.42 Aligned_cols=222 Identities=10% Similarity=-0.065 Sum_probs=184.0
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHh----cCChhHHHHHhccCCCC-CchhHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS----LGFLKDSSKLFDELPER-NLVTWNVII 97 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~-~~~~~~~~i 97 (352)
++.++..+...+...|++++|.+.|+...+.+ +...+..+...|.. .+++++|.+.|++..+. +...
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a----- 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNG----- 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH-----
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHH-----
Confidence 66788888999999999999999999998843 55778889999999 99999999999987654 3344
Q ss_pred HHHHhHHHHHHHHHh----cCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHh----CCChhhHHHHHHHHHhcCCCC
Q 042593 98 TGLVKWTGIIDGYSR----MNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK----NGEVRNCQLIHGYGEKRGFNA 169 (352)
Q Consensus 98 ~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~ 169 (352)
+..+...|.. .+++++|+..|++... .+ +...+..+...+.. .++.++|...+++..+.+
T Consensus 77 -----~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--- 144 (273)
T 1ouv_A 77 -----CHLLGNLYYSGQGVSQNTNKALQYYSKACD-LK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--- 144 (273)
T ss_dssp -----HHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---
T ss_pred -----HHHHHHHHhCCCCcccCHHHHHHHHHHHHH-cC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---
Confidence 7788888888 9999999999999943 33 67788889999998 999999999999999875
Q ss_pred CchhhHHHHHHHHHh----hCChHHHHHHHHHhccCCCCHhhHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCCCCcc
Q 042593 170 FDIHVSNCLIDTYAK----CGCIFSASKLFEDTSVDRKNLVSWTTIISGFAM----HGMGKEAVENFERMQKVGLKPNRS 241 (352)
Q Consensus 170 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~ 241 (352)
+...+..+...|.. .+++++|.+.|++..+. .+...+..+...|.. .+++++|...+++..+.+
T Consensus 145 -~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------ 216 (273)
T 1ouv_A 145 -DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE------ 216 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT------
T ss_pred -cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC------
Confidence 45667788888888 89999999999987644 356778888888988 999999999999988752
Q ss_pred hhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHH----cCChhHHHHHHhcCCCC
Q 042593 242 WRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILER----AGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 242 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 294 (352)
+...+..+..+|.+ .|+.++|.+.+++....
T Consensus 217 ----------------------~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 217 ----------------------NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp ----------------------CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred ----------------------CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 24566677778887 88888888888776544
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.45 E-value=2e-11 Score=102.51 Aligned_cols=225 Identities=8% Similarity=-0.110 Sum_probs=188.3
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHhccCCCCCc-hhHHHHHHHHHhHHHHHHHHHh----cCCHHHHHHHHHHhHhccCC
Q 042593 58 HVYVNTALGDMYVSLGFLKDSSKLFDELPERNL-VTWNVIITGLVKWTGIIDGYSR----MNRSNEALALFRRMAACEYT 132 (352)
Q Consensus 58 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~i~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~ 132 (352)
++.++..+...|...|++++|.+.|++..+++. .. +..+...|.. .+++++|...|++. ...+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a----------~~~lg~~~~~g~~~~~~~~~A~~~~~~a-~~~~- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSG----------CFNLGVLYYQGQGVEKNLKKAASFYAKA-CDLN- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHH----------HHHHHHHHHHTSSSCCCHHHHHHHHHHH-HHTT-
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHH----------HHHHHHHHHcCCCcCCCHHHHHHHHHHH-HHCC-
Confidence 567788889999999999999999998876543 33 7778888888 99999999999999 4333
Q ss_pred CCChhhHHHHHHHHHh----CCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHh----hCChHHHHHHHHHhccCCCC
Q 042593 133 EPSEITILAVLPAIWK----NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK----CGCIFSASKLFEDTSVDRKN 204 (352)
Q Consensus 133 ~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~ 204 (352)
+...+..+...+.. .++.++|...+++..+.+ +...+..+...|.. .+++++|.+.|++..... +
T Consensus 73 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-~ 145 (273)
T 1ouv_A 73 --YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-D 145 (273)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-C
T ss_pred --CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-c
Confidence 67788889999999 999999999999998874 66788889999999 999999999999876544 6
Q ss_pred HhhHHHHHHHHHc----CCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHH---
Q 042593 205 LVSWTTIISGFAM----HGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILER--- 277 (352)
Q Consensus 205 ~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~--- 277 (352)
...+..+...|.. .+++++|...|++..+.+ +...+..+...|..
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----------------------------~~~a~~~lg~~~~~g~~ 197 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK----------------------------DSPGCFNAGNMYHHGEG 197 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----------------------------CHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----------------------------CHHHHHHHHHHHHcCCC
Confidence 6777888888887 899999999999987742 45677788899999
Q ss_pred -cCChhHHHHHHhcCCCCCCCchhhHHHHHHHHh----cccccCcccccccchhhhhh
Q 042593 278 -AGRLEQAEEVASGIPSQITNVVVWRTGFLRLLI----NSYFFSPITLNSQRLFFFPA 330 (352)
Q Consensus 278 -~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~ 330 (352)
.++.++|...+++.... .+...+..+...|.. .+++++|++.+.+.+..-|.
T Consensus 198 ~~~~~~~A~~~~~~a~~~-~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 198 ATKNFKEALARYSKACEL-ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp SCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCccHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 99999999999887665 346778888888888 99999999999998764443
No 51
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=1.5e-13 Score=117.32 Aligned_cols=245 Identities=11% Similarity=-0.027 Sum_probs=164.9
Q ss_pred CchhhHHHHHHHHHhcCChhHHHHHhccCCC--------CCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 042593 57 SHVYVNTALGDMYVSLGFLKDSSKLFDELPE--------RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA 128 (352)
Q Consensus 57 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--------~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 128 (352)
.+..++..+...+...|++++|..+|+++.+ .+.....+ +..+...+...|++++|...+++...
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~la~~~~~~g~~~~A~~~~~~al~ 97 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATM-------LNILALVYRDQNKYKDAANLLNDALA 97 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456788888888899999999998888764 12222111 88889999999999999999999844
Q ss_pred cc-----CCCC-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhc------CCCCCchhhHHHHHHHHHhhCChHHHHHHHH
Q 042593 129 CE-----YTEP-SEITILAVLPAIWKNGEVRNCQLIHGYGEKR------GFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196 (352)
Q Consensus 129 ~~-----~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 196 (352)
.. +-.| ...++..+...+...|++++|...+++..+. +..+.....+..+..++...|++++|.+.|+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 177 (311)
T 3nf1_A 98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ 177 (311)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 31 2123 3457889999999999999999999998865 3333256778899999999999999999999
Q ss_pred HhccC--------CC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcC-------CCCCcchhhhHhHHHHHHHHHHhcC
Q 042593 197 DTSVD--------RK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVG-------LKPNRSWRIGEEGLKFFDKMVEECE 260 (352)
Q Consensus 197 ~~~~~--------~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------~~p~~~~~~~~~a~~~~~~m~~~~~ 260 (352)
+.... .| ...++..+...|...|++++|...++++.+.. ..+....
T Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~------------------ 239 (311)
T 3nf1_A 178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP------------------ 239 (311)
T ss_dssp HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CC------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHH------------------
Confidence 87543 22 34678889999999999999999999987631 1110000
Q ss_pred CCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccCcccccccchh
Q 042593 261 VLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQRLF 326 (352)
Q Consensus 261 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 326 (352)
.......+..+...+...+.+.+|...++..... +.+..+|..+...|...|++++|+..+.+.+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 240 IWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0001122333344444555566666666665544 44556777788888888888888877777653
No 52
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.44 E-value=2.4e-12 Score=113.34 Aligned_cols=227 Identities=10% Similarity=-0.033 Sum_probs=183.8
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCC-HHHHHHHHHHhHhccCCCC-Ch
Q 042593 59 VYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNR-SNEALALFRRMAACEYTEP-SE 136 (352)
Q Consensus 59 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~p-~~ 136 (352)
...|..+..++.+.|++++|++.|++..+-++..+.+ |+.+...+...|+ +++|+..|++.... .| +.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a-------~~~~g~~l~~~g~d~~eAl~~~~~al~l---~P~~~ 166 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTV-------WHFRRVLLKSLQKDLHEEMNYITAIIEE---QPKNY 166 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHTTCCHHHHHHHHHHHHHH---CTTCH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHH-------HHHHHHHHHHcccCHHHHHHHHHHHHHH---CCCCH
Confidence 4678888999999999999999999987533222222 8889999999996 99999999999542 34 45
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHH
Q 042593 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGF 215 (352)
Q Consensus 137 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~ 215 (352)
..|..+..++...|++++|...++.+.+.... +...|..+..++.+.|++++|+..|+++....| +...|+.+..++
T Consensus 167 ~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~--~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l 244 (382)
T 2h6f_A 167 QVWHHRRVLVEWLRDPSQELEFIADILNQDAK--NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVI 244 (382)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 68999999999999999999999999998655 889999999999999999999999999876654 688999999999
Q ss_pred Hc-CCCHHHH-----HHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcC--ChhHHHHH
Q 042593 216 AM-HGMGKEA-----VENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG--RLEQAEEV 287 (352)
Q Consensus 216 ~~-~~~~~~a-----~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~ 287 (352)
.. .|..++| +..+++.++.. | -+...|..+..++.+.| +.++|.+.
T Consensus 245 ~~l~~~~~eA~~~~el~~~~~Al~l~--P------------------------~~~~a~~~l~~ll~~~g~~~~~~a~~~ 298 (382)
T 2h6f_A 245 SNTTGYNDRAVLEREVQYTLEMIKLV--P------------------------HNESAWNYLKGILQDRGLSKYPNLLNQ 298 (382)
T ss_dssp HHTTCSCSHHHHHHHHHHHHHHHHHS--T------------------------TCHHHHHHHHHHHTTTCGGGCHHHHHH
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHC--C------------------------CCHHHHHHHHHHHHccCccchHHHHHH
Confidence 98 6665777 46676666521 2 25678888888898888 68999999
Q ss_pred HhcCCCC-CCCchhhHHHHHHHHhcc---------cccCcccccccc
Q 042593 288 ASGIPSQ-ITNVVVWRTGFLRLLINS---------YFFSPITLNSQR 324 (352)
Q Consensus 288 ~~~m~~~-~~~~~~~~~li~~~~~~g---------~~~~a~~~~~~~ 324 (352)
++++ .. +.+...+..+...|...| ..++|++++.+.
T Consensus 299 ~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 299 LLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 9888 44 666778889999998875 246777777665
No 53
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.43 E-value=3.1e-12 Score=116.41 Aligned_cols=211 Identities=11% Similarity=0.012 Sum_probs=170.4
Q ss_pred chHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCCh-hHHHHHhccCCC--CC-chhHHHHHHHHHhHHHHHHHHHhcCCH
Q 042593 41 NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL-KDSSKLFDELPE--RN-LVTWNVIITGLVKWTGIIDGYSRMNRS 116 (352)
Q Consensus 41 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~--~~-~~~~~~~i~~~~~~~~li~~~~~~~~~ 116 (352)
+.++..++...... +.+...+..+..++...|++ ++|++.|++..+ |+ ... |..+...|...|++
T Consensus 85 ~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a----------~~~lg~~~~~~g~~ 153 (474)
T 4abn_A 85 EKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEA----------WNQLGEVYWKKGDV 153 (474)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHH----------HHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHH----------HHHHHHHHHHcCCH
Confidence 34444555443332 34678888999999999999 999999998765 43 334 88889999999999
Q ss_pred HHHHHHHHHhHhccCCCCChhhHHHHHHHHHhC---------CChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhh--
Q 042593 117 NEALALFRRMAACEYTEPSEITILAVLPAIWKN---------GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC-- 185 (352)
Q Consensus 117 ~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 185 (352)
++|.+.|++... ..|+...+..+...+... |++++|...+++..+.... +...|..+..+|...
T Consensus 154 ~~A~~~~~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~ 228 (474)
T 4abn_A 154 TSAHTCFSGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL--DGRSWYILGNAYLSLYF 228 (474)
T ss_dssp HHHHHHHHHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHH
Confidence 999999999844 347778888899999999 9999999999999887644 788899999999998
Q ss_pred ------CChHHHHHHHHHhccCCC----CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHH
Q 042593 186 ------GCIFSASKLFEDTSVDRK----NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKM 255 (352)
Q Consensus 186 ------g~~~~a~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m 255 (352)
|++++|.+.|++.....| +...|..+..+|...|++++|...|++..+.. |
T Consensus 229 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p----------------- 289 (474)
T 4abn_A 229 NTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--P----------------- 289 (474)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----------------
T ss_pred hhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-----------------
Confidence 999999999998876555 78889999999999999999999999988742 2
Q ss_pred HHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCC
Q 042593 256 VEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPS 293 (352)
Q Consensus 256 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 293 (352)
-+...+..+..++...|+.++|.+.+.++..
T Consensus 290 -------~~~~a~~~l~~~~~~lg~~~eAi~~~~~~~~ 320 (474)
T 4abn_A 290 -------AWPEPQQREQQLLEFLSRLTSLLESKGKTKP 320 (474)
T ss_dssp -------TCHHHHHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred -------CCHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 2556778888888899999999888777643
No 54
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.43 E-value=2.8e-12 Score=109.41 Aligned_cols=205 Identities=12% Similarity=0.059 Sum_probs=163.5
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHh-------CCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC-------C
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKV-------GFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE-------R 88 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------~ 88 (352)
+..++..+...+...|++++|..+++.+.+. ..+.....+..+...|...|++++|...+++..+ +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 5677888999999999999999999998874 3344567889999999999999999999998753 1
Q ss_pred CchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhcc-----CCCCC-hhhHHHHHHHHHhCCChhhHHHHHHHH
Q 042593 89 NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE-----YTEPS-EITILAVLPAIWKNGEVRNCQLIHGYG 162 (352)
Q Consensus 89 ~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~ 162 (352)
+... .... |..+...+...|++++|...+++..... +-.|+ ...+..+...+...|++++|...+++.
T Consensus 106 ~~~~-~~~~-----~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 106 DHPA-VAAT-----LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp TCHH-HHHH-----HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CChH-HHHH-----HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1111 1111 8889999999999999999999984432 22233 347888999999999999999999998
Q ss_pred Hhc------CCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC-----------------------------------
Q 042593 163 EKR------GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD----------------------------------- 201 (352)
Q Consensus 163 ~~~------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----------------------------------- 201 (352)
.+. +..+....++..+..+|...|++++|.+.+++....
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS 259 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH
Confidence 775 323325678889999999999999999999886531
Q ss_pred ---------------CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 202 ---------------RKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 202 ---------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
+.+..++..+..+|.+.|++++|...+++..+
T Consensus 260 ~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 260 FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp SCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12356788899999999999999999998776
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.41 E-value=7.4e-12 Score=98.56 Aligned_cols=166 Identities=12% Similarity=0.000 Sum_probs=94.0
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CC-chhHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RN-LVTWNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~~i~~ 99 (352)
++..|..+...+.+.|++++|++.|+...+.. |-+..++..+..+|.+.|++++|...++.... |+ ...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------- 75 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEA------- 75 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH-------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHH-------
Confidence 44566666666666666666666666666554 33555666666666666666666666665543 21 122
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHH
Q 042593 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179 (352)
Q Consensus 100 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 179 (352)
+..+...+...++++.|...+.+..... +-+...+..+..++.+.|++++|...+++..+.... +..+|..+.
T Consensus 76 ---~~~~~~~~~~~~~~~~a~~~~~~a~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~lg 148 (184)
T 3vtx_A 76 ---YYILGSANFMIDEKQAAIDALQRAIALN--TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG--FIRAYQSIG 148 (184)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch--hhhHHHHHH
Confidence 4445555556666666666666552211 123345555555566666666666666665555332 455555666
Q ss_pred HHHHhhCChHHHHHHHHHhccCCC
Q 042593 180 DTYAKCGCIFSASKLFEDTSVDRK 203 (352)
Q Consensus 180 ~~~~~~g~~~~a~~~~~~~~~~~~ 203 (352)
.+|.+.|++++|.+.|++..+..|
T Consensus 149 ~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 149 LAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhCCc
Confidence 666666666666666665544444
No 56
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.40 E-value=6.9e-11 Score=101.25 Aligned_cols=214 Identities=11% Similarity=0.034 Sum_probs=171.1
Q ss_pred chHHHHHHHHHHhCCCCchhhHHHHHHHHH-------hcCCh-------hHHHHHhccCCC---CCc-hhHHHHHHHHHh
Q 042593 41 NLGTQLHAVFSKVGFQSHVYVNTALGDMYV-------SLGFL-------KDSSKLFDELPE---RNL-VTWNVIITGLVK 102 (352)
Q Consensus 41 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~m~~---~~~-~~~~~~i~~~~~ 102 (352)
+.|..+|+...... +.++..|..++..+. +.|++ ++|..+|++..+ |+. ..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~---------- 101 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL---------- 101 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHH----------
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHH----------
Confidence 57788999998865 567788888888776 35886 899999998765 332 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh-h-hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE-I-TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 180 (352)
|..+...+.+.|++++|..+|++..+ +.|+. . .|..+...+.+.|++++|..++++..+.... +...|.....
T Consensus 102 ~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~a~ 176 (308)
T 2ond_A 102 YFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART--RHHVYVTAAL 176 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT---SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC--CTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh---ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Confidence 88889999999999999999999944 34543 3 7999999999999999999999999887543 5566654443
Q ss_pred HHH-hhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHh
Q 042593 181 TYA-KCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEE 258 (352)
Q Consensus 181 ~~~-~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~ 258 (352)
... ..|+.++|.++|+...+. +.+...|..++..+.+.|+.++|..+|++..+..
T Consensus 177 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~----------------------- 233 (308)
T 2ond_A 177 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG----------------------- 233 (308)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-----------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc-----------------------
Confidence 322 369999999999988665 4468889999999999999999999999998752
Q ss_pred cCCCC--ChhhHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 259 CEVLP--DIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 259 ~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
.+.| ....|..++..+.+.|+.+.|..+++++...
T Consensus 234 -~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 234 -SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp -SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1233 4568888899999999999999999887655
No 57
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.38 E-value=3e-10 Score=103.77 Aligned_cols=274 Identities=10% Similarity=0.005 Sum_probs=171.4
Q ss_pred cHHHHHHHHHh----cCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHh----cCChhHHHHHhccCCCC-CchhHHHH
Q 042593 26 TYSFLIRTCVT----LSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS----LGFLKDSSKLFDELPER-NLVTWNVI 96 (352)
Q Consensus 26 ~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~-~~~~~~~~ 96 (352)
.+..+...+.. .+++++|...|+...+.| ++..+..|...|.. .++.++|.+.|++..+. +...
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a---- 185 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWS---- 185 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH----
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHH----
Confidence 34444444444 445555555555544443 23344444444444 44555555555544322 2222
Q ss_pred HHHHHhHHHHHHHHHh----cCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHh----CCChhhHHHHHHHHHhcCCC
Q 042593 97 ITGLVKWTGIIDGYSR----MNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK----NGEVRNCQLIHGYGEKRGFN 168 (352)
Q Consensus 97 i~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~ 168 (352)
+..+...|.. .++.++|...|++. ...+ +...+..+...+.. .++.++|...++...+.|
T Consensus 186 ------~~~Lg~~y~~g~g~~~~~~~A~~~~~~a-~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 253 (490)
T 2xm6_A 186 ------CNQLGYMYSRGLGVERNDAISAQWYRKS-ATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG-- 253 (490)
T ss_dssp ------HHHHHHHHHHTSSSCCCHHHHHHHHHHH-HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--
T ss_pred ------HHHHHHHHhcCCCCCcCHHHHHHHHHHH-HHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence 4455555555 56677777777666 3222 34455555555554 567777777777766653
Q ss_pred CCchhhHHHHHHHHHh----hCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcC-----CCHHHHHHHHHHHHhcCCCCC
Q 042593 169 AFDIHVSNCLIDTYAK----CGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMH-----GMGKEAVENFERMQKVGLKPN 239 (352)
Q Consensus 169 ~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~ 239 (352)
+...+..+...|.. .++.++|.+.|+..... -+...+..+...|... ++.++|...|++..+.|..
T Consensus 254 --~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~-- 328 (490)
T 2xm6_A 254 --NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDA-- 328 (490)
T ss_dssp --CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCH--
T ss_pred --CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCH--
Confidence 34455566666666 67788888888776433 3455666666667666 7888888888887776421
Q ss_pred cchhh-------------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHH----cCChhHHHHHHhcCCCCCCCchhhH
Q 042593 240 RSWRI-------------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILER----AGRLEQAEEVASGIPSQITNVVVWR 302 (352)
Q Consensus 240 ~~~~~-------------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~ 302 (352)
...+. .++|..+|++..+. + +...+..|...|.. .++.++|.+.|++.... .+...+.
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~ 403 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-G---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-GLSAAQV 403 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-CCHHHHH
Confidence 11111 56788888887775 3 56778888888888 88999999999887654 4667888
Q ss_pred HHHHHHHh----cccccCcccccccchhhh
Q 042593 303 TGFLRLLI----NSYFFSPITLNSQRLFFF 328 (352)
Q Consensus 303 ~li~~~~~----~g~~~~a~~~~~~~~~~~ 328 (352)
.|...|.. .+++++|...+.+.+..-
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 88888887 788999998888887654
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.38 E-value=5.9e-12 Score=99.15 Aligned_cols=161 Identities=11% Similarity=0.016 Sum_probs=99.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEP-SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 181 (352)
|..+...|.+.|++++|++.|++..+. .| +..++..+..++.+.|++++|...+......... +...+..+...
T Consensus 8 y~~lG~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~ 82 (184)
T 3vtx_A 8 YMDIGDKKRTKGDFDGAIRAYKKVLKA---DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT--SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch--hHHHHHHHHHH
Confidence 666666666677777777777666332 23 3345666666666667777766666666655433 45556666666
Q ss_pred HHhhCChHHHHHHHHHhccCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcC
Q 042593 182 YAKCGCIFSASKLFEDTSVDR-KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECE 260 (352)
Q Consensus 182 ~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~ 260 (352)
+...++++.|.+.+.+..... .+...+..+...|.+.|++++|.+.|++..+..
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~------------------------- 137 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK------------------------- 137 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-------------------------
Confidence 666666666666666654433 345566666666666666666666666665521
Q ss_pred CCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 261 VLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 261 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
+-+..+|..+..+|.+.|++++|.+.|++..+.
T Consensus 138 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 138 -PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 124556666666666666666666666655443
No 59
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.36 E-value=2.1e-10 Score=104.88 Aligned_cols=190 Identities=8% Similarity=-0.007 Sum_probs=114.3
Q ss_pred CcccHHHHHHHHHh----cCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHh----cCChhHHHHHhccCCCC-CchhH
Q 042593 23 DSFTYSFLIRTCVT----LSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVS----LGFLKDSSKLFDELPER-NLVTW 93 (352)
Q Consensus 23 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~-~~~~~ 93 (352)
++..+..+...+.. .++++.|.+.|+...+.| ++..+..|...|.. .++.++|.+.|++..+. +...
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a- 113 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQA- 113 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH-
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHH-
Confidence 55566666666666 677777777777777654 45566667777777 77777777777776543 2333
Q ss_pred HHHHHHHHhHHHHHHHHHh----cCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHh----CCChhhHHHHHHHHHhc
Q 042593 94 NVIITGLVKWTGIIDGYSR----MNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK----NGEVRNCQLIHGYGEKR 165 (352)
Q Consensus 94 ~~~i~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~ 165 (352)
+..|...|.. .+++++|...|++. ...+ +...+..+...|.. .++.++|...++...+.
T Consensus 114 ---------~~~Lg~~y~~g~g~~~~~~~A~~~~~~a-~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 114 ---------QQNLGVMYHEGNGVKVDKAESVKWFRLA-AEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp ---------HHHHHHHHHHTSSSCCCHHHHHHHHHHH-HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred ---------HHHHHHHHHcCCCCCCCHHHHHHHHHHH-HHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 4455555555 56777777777766 3332 34455555555555 56666666666666654
Q ss_pred CCCCCchhhHHHHHHHHHh----hCChHHHHHHHHHhccCCCCHhhHHHHHHHHHc----CCCHHHHHHHHHHHHhc
Q 042593 166 GFNAFDIHVSNCLIDTYAK----CGCIFSASKLFEDTSVDRKNLVSWTTIISGFAM----HGMGKEAVENFERMQKV 234 (352)
Q Consensus 166 ~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~ 234 (352)
| +...+..+...|.. .++.++|.+.|++.... .+...+..+...|.. .++.++|...|++..+.
T Consensus 181 ~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 181 G----NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS-GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred C----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 3 44555566666665 56666666666654322 234445555555543 55666666666655544
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.33 E-value=4.3e-12 Score=112.56 Aligned_cols=274 Identities=13% Similarity=0.030 Sum_probs=198.5
Q ss_pred cccHHHHHHHHHhcCCcchHHHHHHHHHHh----CCCC-chhhHHHHHHHHHhcCChhHHHHHhccCCC-----CCchhH
Q 042593 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKV----GFQS-HVYVNTALGDMYVSLGFLKDSSKLFDELPE-----RNLVTW 93 (352)
Q Consensus 24 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~ 93 (352)
..++..+...+...|++++|...++..... +-.| ...++..+...|...|++++|...+++..+ ++...
T Consensus 47 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~- 125 (406)
T 3sf4_A 47 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG- 125 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccc-
Confidence 357888899999999999999999987653 2122 356788899999999999999999998764 22111
Q ss_pred HHHHHHHHhHHHHHHHHHhcCC--------------------HHHHHHHHHHhHhc---cCCCCC-hhhHHHHHHHHHhC
Q 042593 94 NVIITGLVKWTGIIDGYSRMNR--------------------SNEALALFRRMAAC---EYTEPS-EITILAVLPAIWKN 149 (352)
Q Consensus 94 ~~~i~~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~~~---~~~~p~-~~t~~~ll~~~~~~ 149 (352)
... .+..+...+...|+ +++|...+++.... .+-.|. ..++..+...+...
T Consensus 126 --~~~---~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 200 (406)
T 3sf4_A 126 --EAR---ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLL 200 (406)
T ss_dssp --HHH---HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred --hHH---HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc
Confidence 011 18888899999999 99999999886332 111121 34688888999999
Q ss_pred CChhhHHHHHHHHHhcCCC----CCchhhHHHHHHHHHhhCChHHHHHHHHHhccC---CCC----HhhHHHHHHHHHcC
Q 042593 150 GEVRNCQLIHGYGEKRGFN----AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD---RKN----LVSWTTIISGFAMH 218 (352)
Q Consensus 150 ~~~~~a~~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~~~li~~~~~~ 218 (352)
|++++|...+++..+.... +....++..+..+|...|++++|.+.+++.... .++ ..++..+...|...
T Consensus 201 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 280 (406)
T 3sf4_A 201 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 280 (406)
T ss_dssp TBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHh
Confidence 9999999999988754211 112347888999999999999999999986543 122 56788899999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCC-CCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC---
Q 042593 219 GMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEV-LPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ--- 294 (352)
Q Consensus 219 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 294 (352)
|++++|...+++..+... .. +. .....++..+..+|.+.|++++|.+.+++....
T Consensus 281 g~~~~A~~~~~~a~~~~~--------------------~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 281 QDYEKAIDYHLKHLAIAQ--------------------EL-NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 339 (406)
T ss_dssp TCHHHHHHHHHHHHHHHH--------------------HT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHH--------------------hc-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 999999999999776310 00 11 112567888999999999999999998875443
Q ss_pred ----CCCchhhHHHHHHHHhcccccCcccccccc
Q 042593 295 ----ITNVVVWRTGFLRLLINSYFFSPITLNSQR 324 (352)
Q Consensus 295 ----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 324 (352)
.....++..+...+...|+...+..-..+.
T Consensus 340 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 373 (406)
T 3sf4_A 340 VGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSE 373 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTSCC-------
T ss_pred hcCCcchhHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 123457777888888888886554444333
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.32 E-value=1.2e-11 Score=112.49 Aligned_cols=196 Identities=8% Similarity=-0.076 Sum_probs=167.4
Q ss_pred CcccHHHHHHHHHhcCCc-chHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYP-NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~ 99 (352)
+...+..+...+...|++ ++|.+.|+...+.. +.+...|..+..+|...|++++|.+.|++..+ |+...
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------- 172 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVS------- 172 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHH-------
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHH-------
Confidence 677888889999999999 99999999999876 45688999999999999999999999999876 55333
Q ss_pred HHhHHHHHHHHHhc---------CCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhC--------CChhhHHHHHHHH
Q 042593 100 LVKWTGIIDGYSRM---------NRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN--------GEVRNCQLIHGYG 162 (352)
Q Consensus 100 ~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~--------~~~~~a~~~~~~~ 162 (352)
|..+...+... |++++|...|++..... +-+...|..+..++... |++++|...+++.
T Consensus 173 ---~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~a 247 (474)
T 4abn_A 173 ---LQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQA 247 (474)
T ss_dssp ---HHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 88888999999 99999999999985432 23466889999999988 9999999999999
Q ss_pred HhcCCC-CCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 042593 163 EKRGFN-AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERM 231 (352)
Q Consensus 163 ~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m 231 (352)
.+.... +.+...|..+..+|...|++++|.+.|++.....| +...+..+...+...|++++|.+.+.++
T Consensus 248 l~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 248 EKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 987541 02889999999999999999999999999866554 5678889999999999999998876554
No 62
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=2.8e-10 Score=88.99 Aligned_cols=165 Identities=12% Similarity=0.006 Sum_probs=136.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhh
Q 042593 59 VYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138 (352)
Q Consensus 59 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t 138 (352)
...+..+...+...|++++|.+.++++.+.++..... |..+...+...|++++|...++++.... +.+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~ 78 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDV-------ALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKV 78 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHH-------HHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHH
Confidence 4567778888999999999999999987632222111 7888889999999999999999984432 235668
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCC-CCHhhHHHHHHHHHc
Q 042593 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR-KNLVSWTTIISGFAM 217 (352)
Q Consensus 139 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~li~~~~~ 217 (352)
+..+...+...|++++|...++.+.+.... +...+..+..++...|++++|.+.+++..... .+...+..+...+..
T Consensus 79 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 156 (186)
T 3as5_A 79 ATVLGLTYVQVQKYDLAVPLLIKVAEANPI--NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ 156 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcH--hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 888899999999999999999999887543 77888899999999999999999999876554 467889999999999
Q ss_pred CCCHHHHHHHHHHHHhc
Q 042593 218 HGMGKEAVENFERMQKV 234 (352)
Q Consensus 218 ~~~~~~a~~~~~~m~~~ 234 (352)
.|++++|...+++..+.
T Consensus 157 ~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 157 MGRHEEALPHFKKANEL 173 (186)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHc
Confidence 99999999999998764
No 63
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.31 E-value=2.8e-10 Score=97.39 Aligned_cols=198 Identities=9% Similarity=-0.028 Sum_probs=158.3
Q ss_pred CcccHHHHHHHHH-------hcCCc-------chHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC-
Q 042593 23 DSFTYSFLIRTCV-------TLSYP-------NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE- 87 (352)
Q Consensus 23 ~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~- 87 (352)
++..|......+. +.|++ ++|..+|+...+.-.+-+...|..++..+.+.|++++|.++|++..+
T Consensus 49 ~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 128 (308)
T 2ond_A 49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128 (308)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 6667777777765 35887 89999999998842144567899999999999999999999999876
Q ss_pred -CC-ch-hHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHH-HhCCChhhHHHHHHHHH
Q 042593 88 -RN-LV-TWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAI-WKNGEVRNCQLIHGYGE 163 (352)
Q Consensus 88 -~~-~~-~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~-~~~~~~~~a~~~~~~~~ 163 (352)
|+ .. . |..+...+.+.|++++|..+|++..+ .. +++...|....... ...|+.++|..+|+...
T Consensus 129 ~p~~~~~~----------~~~~~~~~~~~~~~~~A~~~~~~a~~-~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al 196 (308)
T 2ond_A 129 EDIDPTLV----------YIQYMKFARRAEGIKSGRMIFKKARE-DA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGL 196 (308)
T ss_dssp SSSCTHHH----------HHHHHHHHHHHHCHHHHHHHHHHHHT-ST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred cccCccHH----------HHHHHHHHHHhcCHHHHHHHHHHHHh-cC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33 22 3 88888889999999999999999944 22 23344454433332 23799999999999998
Q ss_pred hcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC---CC--CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 164 KRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD---RK--NLVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 164 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
+.... +...|..++..+.+.|+.++|..+|++.... .| ....|..++....+.|+.++|..+++++.+.
T Consensus 197 ~~~p~--~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 197 KKYGD--IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHTT--CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HhCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 87433 7889999999999999999999999998764 44 4678999999999999999999999998875
No 64
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.31 E-value=4.2e-10 Score=110.38 Aligned_cols=255 Identities=11% Similarity=0.068 Sum_probs=150.2
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGL 100 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~~ 100 (352)
+..+|..+.+++.+.|++++|.+.|... -|...|..++.++.+.|++++|.+.+....+ ++...
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~I-------- 1169 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV-------- 1169 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccc--------
Confidence 3456666777777777777777666442 3455666677777777777777777665433 22222
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHH
Q 042593 101 VKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180 (352)
Q Consensus 101 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 180 (352)
.+.++.+|++.+++++..... . .|+...|..+...|...|++++|..+|.. ...|..+..
T Consensus 1170 --dt~LafaYAKl~rleele~fI----~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~k----------A~ny~rLA~ 1229 (1630)
T 1xi4_A 1170 --ETELIFALAKTNRLAELEEFI----N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNN----------VSNFGRLAS 1229 (1630)
T ss_pred --cHHHHHHHHhhcCHHHHHHHH----h----CCCHHHHHHHHHHHHhcCCHHHHHHHHHh----------hhHHHHHHH
Confidence 223444455555544322221 0 23334444555666666666666666654 235666677
Q ss_pred HHHhhCChHHHHHHHHHhccCC--------------------------CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 181 TYAKCGCIFSASKLFEDTSVDR--------------------------KNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 181 ~~~~~g~~~~a~~~~~~~~~~~--------------------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
+|++.|+++.|.+.+++..... .+...+..++..|-+.|.+++|..+++.-...
T Consensus 1230 tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1230 TLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 7777777777776666543221 23445667888888999999999999776643
Q ss_pred CCCCCcchhh----------hHhHHHHHHHHHHhcCCCC------ChhhHHHHHHHHHHcCChhHHHHHH----------
Q 042593 235 GLKPNRSWRI----------GEEGLKFFDKMVEECEVLP------DIKHYGCLIDILERAGRLEQAEEVA---------- 288 (352)
Q Consensus 235 ~~~p~~~~~~----------~~~a~~~~~~m~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~---------- 288 (352)
. +.....+. .+...+.++....+..++| +...|.-++-.|.+.|+++.|....
T Consensus 1310 e-raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~ 1388 (1630)
T 1xi4_A 1310 E-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKE 1388 (1630)
T ss_pred C-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhh
Confidence 3 12222222 4444444444444424433 4567889999999999999888332
Q ss_pred ---hcCCCCCCCchhhHHHHHHHHhcc
Q 042593 289 ---SGIPSQITNVVVWRTGFLRLLINS 312 (352)
Q Consensus 289 ---~~m~~~~~~~~~~~~li~~~~~~g 312 (352)
.+...+..|...|-..+.-|....
T Consensus 1389 ~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1389 GQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHhhC
Confidence 222222457777777788887666
No 65
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.28 E-value=1.1e-10 Score=91.19 Aligned_cols=162 Identities=15% Similarity=0.028 Sum_probs=136.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
|..+...+...|++++|...++++ .... +.+..++..+...+...|++++|...++.+.+.... +...+..+...+
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~ 86 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQV-YDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD--NVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTT-CCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH-HHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHH
Confidence 777888899999999999999998 3322 235668888999999999999999999999887543 778888999999
Q ss_pred HhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCC
Q 042593 183 AKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEV 261 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~ 261 (352)
...|++++|.+.+++.... +.+...+..+...+...|++++|...+++..+..
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------------------------- 140 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-------------------------- 140 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--------------------------
Confidence 9999999999999987655 4567888889999999999999999999988742
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 262 LPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 262 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
+.+...+..+...+.+.|++++|.+.+++....
T Consensus 141 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 141 PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 225678888999999999999999999876544
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.28 E-value=2.5e-10 Score=100.86 Aligned_cols=254 Identities=7% Similarity=-0.100 Sum_probs=185.1
Q ss_pred HHHHHHHHhCCCCch----hhHHHHHHHHHhcCChhHHHHHhccCCC-----CCchhHHHHHHHHHhHHHHHHHHHhcCC
Q 042593 45 QLHAVFSKVGFQSHV----YVNTALGDMYVSLGFLKDSSKLFDELPE-----RNLVTWNVIITGLVKWTGIIDGYSRMNR 115 (352)
Q Consensus 45 ~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~i~~~~~~~~li~~~~~~~~ 115 (352)
+.++.+.....+.+. ..+-.....+...|++++|...|++..+ ++... .+.. |..+...|...|+
T Consensus 85 ~~~~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~-----~~~lg~~~~~~~~ 158 (383)
T 3ulq_A 85 DLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIE-KAEF-----FFKMSESYYYMKQ 158 (383)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH-HHHH-----HHHHHHHHHHTTC
T ss_pred hHHHHHHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHH-HHHH-----HHHHHHHHHHcCC
Confidence 777776543311111 1222366677889999999999998754 33221 1111 8889999999999
Q ss_pred HHHHHHHHHHhHhccCCCCC-----hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCC----CCCchhhHHHHHHHHHhhC
Q 042593 116 SNEALALFRRMAACEYTEPS-----EITILAVLPAIWKNGEVRNCQLIHGYGEKRGF----NAFDIHVSNCLIDTYAKCG 186 (352)
Q Consensus 116 ~~~a~~~~~~m~~~~~~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g 186 (352)
+++|...+++......-.++ ..+++.+..++...|++++|...+++..+... .+....++..+..+|...|
T Consensus 159 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 238 (383)
T 3ulq_A 159 TYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS 238 (383)
T ss_dssp HHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC
Confidence 99999999998443222222 34788889999999999999999998875421 1112357889999999999
Q ss_pred ChHHHHHHHHHhcc-----CC-C-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhc
Q 042593 187 CIFSASKLFEDTSV-----DR-K-NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEEC 259 (352)
Q Consensus 187 ~~~~a~~~~~~~~~-----~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~ 259 (352)
++++|.+.|++... .. | ...++..+...|.+.|++++|...+++..+.. . ..
T Consensus 239 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------~---~~- 297 (383)
T 3ulq_A 239 QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS-----------------Q---KA- 297 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------H---HH-
T ss_pred CHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----------------H---Hc-
Confidence 99999999998765 22 4 35678899999999999999999999977631 0 11
Q ss_pred CCCCChhhHHHHHHHHHHcCC---hhHHHHHHhcCCCCCCCchhhHHHHHHHHhcccccCcccccccch
Q 042593 260 EVLPDIKHYGCLIDILERAGR---LEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRL 325 (352)
Q Consensus 260 ~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 325 (352)
+.+.....+..+...|...|+ .++|..++++....+.....+..+...|...|++++|...+.+.+
T Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 212223346678888888998 889999998885433344577888999999999999999988876
No 67
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.28 E-value=2.1e-11 Score=104.90 Aligned_cols=244 Identities=14% Similarity=0.062 Sum_probs=181.8
Q ss_pred cccHHHHHHHHHhcCCcchHHHHHHHHHHh----CCCC-chhhHHHHHHHHHhcCChhHHHHHhccCCC-----CCchhH
Q 042593 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKV----GFQS-HVYVNTALGDMYVSLGFLKDSSKLFDELPE-----RNLVTW 93 (352)
Q Consensus 24 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~ 93 (352)
...+..+...+...|++++|.+.++...+. +-.| ...++..+...+...|++++|...+++..+ ++....
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 122 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence 467888999999999999999999987643 2122 356788999999999999999999988753 221111
Q ss_pred HHHHHHHHhHHHHHHHHHhcCC--------------------HHHHHHHHHHhHhc---cCCCCC-hhhHHHHHHHHHhC
Q 042593 94 NVIITGLVKWTGIIDGYSRMNR--------------------SNEALALFRRMAAC---EYTEPS-EITILAVLPAIWKN 149 (352)
Q Consensus 94 ~~~i~~~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~~~---~~~~p~-~~t~~~ll~~~~~~ 149 (352)
. . .+..+...+...|+ +++|...+++.... .+..|. ..++..+...+...
T Consensus 123 -~--~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 196 (338)
T 3ro2_A 123 -A--R---ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLL 196 (338)
T ss_dssp -H--H---HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred -H--H---HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence 1 1 18888899999999 99999999886322 111111 34688888899999
Q ss_pred CChhhHHHHHHHHHhcCC----CCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC---CCC----HhhHHHHHHHHHcC
Q 042593 150 GEVRNCQLIHGYGEKRGF----NAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD---RKN----LVSWTTIISGFAMH 218 (352)
Q Consensus 150 ~~~~~a~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~~~li~~~~~~ 218 (352)
|++++|...+++..+... .+....++..+..++...|++++|.+.+++.... ..+ ..++..+...+...
T Consensus 197 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 276 (338)
T 3ro2_A 197 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL 276 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh
Confidence 999999999998875421 1112347888999999999999999999986543 122 56788889999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCC
Q 042593 219 GMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPS 293 (352)
Q Consensus 219 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 293 (352)
|++++|...+++..+.. ...........++..+...|.+.|++++|...+++...
T Consensus 277 g~~~~A~~~~~~a~~~~--------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 277 QDYEKAIDYHLKHLAIA--------------------QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp TCHHHHHHHHHHHHHHH--------------------HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH--------------------HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 99999999999877631 01101112345778899999999999999999987654
No 68
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.27 E-value=1.3e-11 Score=109.98 Aligned_cols=244 Identities=11% Similarity=0.023 Sum_probs=183.3
Q ss_pred ccHHHHHHHHHhcCCcchHHHHHHHHHHh----C-CCCchhhHHHHHHHHHhcCChhHHHHHhccCCC-----CCchhHH
Q 042593 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKV----G-FQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE-----RNLVTWN 94 (352)
Q Consensus 25 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~ 94 (352)
..+..+...+...|++++|...++...+. + .+.....+..+...|...|++++|...+++..+ .+... .
T Consensus 87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~ 165 (411)
T 4a1s_A 87 AIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLS-E 165 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-H
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHH-H
Confidence 47888999999999999999999988764 1 123457788999999999999999999998754 11111 1
Q ss_pred HHHHHHHhHHHHHHHHHhcCC-----------------HHHHHHHHHHhHhcc---CCCCC-hhhHHHHHHHHHhCCChh
Q 042593 95 VIITGLVKWTGIIDGYSRMNR-----------------SNEALALFRRMAACE---YTEPS-EITILAVLPAIWKNGEVR 153 (352)
Q Consensus 95 ~~i~~~~~~~~li~~~~~~~~-----------------~~~a~~~~~~m~~~~---~~~p~-~~t~~~ll~~~~~~~~~~ 153 (352)
.. .+..+...|...|+ +++|...+++..... +-.+. ..++..+...+...|+++
T Consensus 166 ~~-----~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 240 (411)
T 4a1s_A 166 GR-----ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQ 240 (411)
T ss_dssp HH-----HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HH-----HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChH
Confidence 11 18888899999999 999999988863221 11121 247888889999999999
Q ss_pred hHHHHHHHHHhcCCCC----CchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-------CHhhHHHHHHHHHcCCCHH
Q 042593 154 NCQLIHGYGEKRGFNA----FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-------NLVSWTTIISGFAMHGMGK 222 (352)
Q Consensus 154 ~a~~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~ 222 (352)
+|...+++..+..... .....+..+..+|...|++++|.+.+++.....+ ...++..+...|...|+++
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 320 (411)
T 4a1s_A 241 AAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFN 320 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999887643211 0133788899999999999999999998654311 2567888999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 223 EAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 223 ~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
+|...+++..+.. .... .......++..+..+|.+.|+.++|.+.+++....
T Consensus 321 ~A~~~~~~al~~~-----------------~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 321 TAIEYHNRHLAIA-----------------QELG---DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHH-----------------HHHT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----------------HHCC---ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 9999999977631 1100 11113457888999999999999999999876543
No 69
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.26 E-value=7.9e-10 Score=108.48 Aligned_cols=169 Identities=12% Similarity=0.087 Sum_probs=75.8
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHH
Q 042593 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGI 106 (352)
Q Consensus 27 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~l 106 (352)
..-+...+...|.+++|..+|+... -.....+.++. ..+++++|.++.++... ..+ |..+
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn~--p~v----------WsqL 1111 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCNE--PAV----------WSQL 1111 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcCC--HHH----------HHHH
Confidence 4445666777777777777777641 11111222221 34445555555544422 112 4444
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhC
Q 042593 107 IDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG 186 (352)
Q Consensus 107 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 186 (352)
..++.+.|++++|.+-|.+. -|...|..++.++.+.|++++|.+.+....+... ++...+.++.+|++.+
T Consensus 1112 AKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~---e~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1112 AKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR---ESYVETELIFALAKTN 1181 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc---cccccHHHHHHHHhhc
Confidence 55555555555555554333 2333444455555555555555555544443321 1122223444444444
Q ss_pred ChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 042593 187 CIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230 (352)
Q Consensus 187 ~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 230 (352)
++++...+. ..++...|..+...|...|++++|..+|..
T Consensus 1182 rleele~fI-----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~k 1220 (1630)
T 1xi4_A 1182 RLAELEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNN 1220 (1630)
T ss_pred CHHHHHHHH-----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 444322221 123333344444444444444444444444
No 70
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.26 E-value=1.4e-10 Score=97.26 Aligned_cols=194 Identities=11% Similarity=0.047 Sum_probs=149.1
Q ss_pred HHhcCCcchHHHHHHHHHHh-------CCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC-------C-CchhHHHHHH
Q 042593 34 CVTLSYPNLGTQLHAVFSKV-------GFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE-------R-NLVTWNVIIT 98 (352)
Q Consensus 34 ~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------~-~~~~~~~~i~ 98 (352)
....|++++|...++...+. ..+....++..+...|...|++++|+..+++..+ + +.....+
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~--- 87 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAAT--- 87 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH---
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHH---
Confidence 34678899999988887752 2133567899999999999999999999998753 1 1222111
Q ss_pred HHHhHHHHHHHHHhcCCHHHHHHHHHHhHhcc-----CCCCC-hhhHHHHHHHHHhCCChhhHHHHHHHHHhc------C
Q 042593 99 GLVKWTGIIDGYSRMNRSNEALALFRRMAACE-----YTEPS-EITILAVLPAIWKNGEVRNCQLIHGYGEKR------G 166 (352)
Q Consensus 99 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 166 (352)
|..+...+...|++++|...|++..... .-.|+ ..++..+...+...|++++|...+++..+. +
T Consensus 88 ----~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 163 (283)
T 3edt_B 88 ----LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP 163 (283)
T ss_dssp ----HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred ----HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 8899999999999999999999984331 11232 457889999999999999999999998876 2
Q ss_pred CCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC---------------------------------------------
Q 042593 167 FNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD--------------------------------------------- 201 (352)
Q Consensus 167 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------------------------------------------- 201 (352)
..|....++..+..+|.+.|++++|.+.+++....
T Consensus 164 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (283)
T 3edt_B 164 DDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKA 243 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------C
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh
Confidence 23325678889999999999999999999876431
Q ss_pred ----CC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 202 ----RK-NLVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 202 ----~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
.| ...++..+...|...|++++|...+++..+.
T Consensus 244 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 244 CKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11 2356778889999999999999999987753
No 71
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.26 E-value=6.2e-10 Score=100.91 Aligned_cols=280 Identities=8% Similarity=-0.111 Sum_probs=176.5
Q ss_pred cccHHHHHHHHHhc--CCcchHHHHHHHHHHhCCCCchhhHHHHHHH---HHhcCChhHHHHHhccCCC--CC-chhHHH
Q 042593 24 SFTYSFLIRTCVTL--SYPNLGTQLHAVFSKVGFQSHVYVNTALGDM---YVSLGFLKDSSKLFDELPE--RN-LVTWNV 95 (352)
Q Consensus 24 ~~~~~~ll~~~~~~--g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~---~~~~g~~~~a~~~~~~m~~--~~-~~~~~~ 95 (352)
..+++....++... +++++|.+.|+...+.. |-++..+..+..+ +...++.++|++.+++..+ |+ ...
T Consensus 136 ~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~--- 211 (472)
T 4g1t_A 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL--- 211 (472)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHH---
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHH---
Confidence 45666666666654 56899999999998875 3355555555554 4456778888888877653 33 333
Q ss_pred HHHHHHhHHHHHHHH----HhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCc
Q 042593 96 IITGLVKWTGIIDGY----SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD 171 (352)
Q Consensus 96 ~i~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 171 (352)
+..+...+ ...++.++|.+.+++..... +.+..++..+...+...|++++|...+++..+.... +
T Consensus 212 -------~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~ 280 (472)
T 4g1t_A 212 -------KVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN--N 280 (472)
T ss_dssp -------HHHHHHHHHHCC------CHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--C
T ss_pred -------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC--h
Confidence 33333333 34567888999998874322 234567888899999999999999999998887544 6
Q ss_pred hhhHHHHHHHHHhh-------------------CChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 042593 172 IHVSNCLIDTYAKC-------------------GCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERM 231 (352)
Q Consensus 172 ~~~~~~li~~~~~~-------------------g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 231 (352)
..++..+..+|... +..+.|...|+..... +.+..++..+...|...|++++|.+.|++.
T Consensus 281 ~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka 360 (472)
T 4g1t_A 281 AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence 77777776666432 3467788888876554 445677888889999999999999999998
Q ss_pred HhcCCCCCcch---hh-----------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CC
Q 042593 232 QKVGLKPNRSW---RI-----------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-IT 296 (352)
Q Consensus 232 ~~~~~~p~~~~---~~-----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~ 296 (352)
.+....+.... +. .++|...|++..+. .|+.......+ ..+.++++..... +.
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~~~~~~---------~~l~~~~~~~l~~~p~ 428 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQKSREKEKMK---------DKLQKIAKMRLSKNGA 428 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHHHHHHH---------HHHHHHHHHHHHHCC-
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHHH---------HHHHHHHHHHHHhCCC
Confidence 87654443221 00 67788888887753 45543332222 2334444433333 55
Q ss_pred CchhhHHHHHHHHhcccccCcccccccchhhhhh
Q 042593 297 NVVVWRTGFLRLLINSYFFSPITLNSQRLFFFPA 330 (352)
Q Consensus 297 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 330 (352)
+..+|..+...|...|++++|++.+.+++..-|.
T Consensus 429 ~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 429 DSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp CTTHHHHHHHHHHHHHHCC---------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 7789999999999999999999999999864443
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.23 E-value=1.3e-10 Score=110.42 Aligned_cols=160 Identities=9% Similarity=0.048 Sum_probs=92.3
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHhccCCC--CC-chhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC
Q 042593 59 VYVNTALGDMYVSLGFLKDSSKLFDELPE--RN-LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS 135 (352)
Q Consensus 59 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 135 (352)
..+++.|..+|.+.|++++|++.|++..+ |+ ..+ |+.+..+|.+.|++++|++.|++..+. .|+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a----------~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~ 75 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA----------HSNLASVLQQQGKLQEALMHYKEAIRI---SPT 75 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHH----------HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC
Confidence 45555566666666666666666655543 22 222 555556666666666666666665331 233
Q ss_pred -hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHH
Q 042593 136 -EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIIS 213 (352)
Q Consensus 136 -~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~ 213 (352)
...|..+..++.+.|++++|...+++..+.... +...|+.+..+|.+.|++++|++.|++..+..| +...|..+..
T Consensus 76 ~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~--~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~ 153 (723)
T 4gyw_A 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA--FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH 153 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhh
Confidence 345666666666666666666666666555432 556666666666666666666666666544433 3556666666
Q ss_pred HHHcCCCHHHHHHHHHHHHh
Q 042593 214 GFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 214 ~~~~~~~~~~a~~~~~~m~~ 233 (352)
++...|++++|.+.+++..+
T Consensus 154 ~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 154 CLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHTTCCTTHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHH
Confidence 66666666666666655443
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.23 E-value=4.7e-10 Score=99.04 Aligned_cols=231 Identities=6% Similarity=-0.115 Sum_probs=171.7
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHh----CCCC-chhhHHHHHHHHHhcCChhHHHHHhccCCC-----CCchhHHHHHHH
Q 042593 30 LIRTCVTLSYPNLGTQLHAVFSKV----GFQS-HVYVNTALGDMYVSLGFLKDSSKLFDELPE-----RNLVTWNVIITG 99 (352)
Q Consensus 30 ll~~~~~~g~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~i~~ 99 (352)
....+...|++++|...++...+. +-++ ...++..+..+|...|++++|...+++..+ ++.....+ .
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~--~- 185 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL--Q- 185 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH--H-
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH--H-
Confidence 455677899999999999998864 2112 346789999999999999999999888753 22111111 1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh----hhHHHHHHHHHhCCChhhHHHHHHHHHhc----CCCCCc
Q 042593 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE----ITILAVLPAIWKNGEVRNCQLIHGYGEKR----GFNAFD 171 (352)
Q Consensus 100 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~ 171 (352)
.++.+...|...|++++|...|++......-.++. .++..+...+...|++++|...+++..+. +..|..
T Consensus 186 --~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 186 --CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred --HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 18889999999999999999999884332211222 37888999999999999999999988773 332326
Q ss_pred hhhHHHHHHHHHhhCChHHHHHHHHHhccC-----CC-CHhhHHHHHHHHHcCCC---HHHHHHHHHHHHhcCCCCCcch
Q 042593 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVD-----RK-NLVSWTTIISGFAMHGM---GKEAVENFERMQKVGLKPNRSW 242 (352)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~ 242 (352)
..++..+..+|.+.|++++|.+.+++.... .| ....++.+...+...|+ +++|..++++..
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---------- 333 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---------- 333 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc----------
Confidence 778999999999999999999999986543 12 12335677788888898 666666666541
Q ss_pred hhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCC
Q 042593 243 RIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292 (352)
Q Consensus 243 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 292 (352)
..+.....+..+...|.+.|++++|.+.+++..
T Consensus 334 -----------------~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 334 -----------------LYADLEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----------------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 112234577789999999999999999887653
No 74
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.22 E-value=4.5e-10 Score=99.00 Aligned_cols=255 Identities=7% Similarity=-0.061 Sum_probs=182.6
Q ss_pred HHHHHHHHhCCCCch----hhHHHHHHHHHhcCChhHHHHHhccCCC-----CCchhHHHHHHHHHhHHHHHHHHHhcCC
Q 042593 45 QLHAVFSKVGFQSHV----YVNTALGDMYVSLGFLKDSSKLFDELPE-----RNLVTWNVIITGLVKWTGIIDGYSRMNR 115 (352)
Q Consensus 45 ~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~i~~~~~~~~li~~~~~~~~ 115 (352)
+.++.+.....+.+. ..+-.....+...|++++|...|++..+ ++... .+.+ +..+...|...|+
T Consensus 83 ~~l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~-----~~~lg~~y~~~~~ 156 (378)
T 3q15_A 83 ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIE-KAEF-----HFKVAEAYYHMKQ 156 (378)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHH-HHHH-----HHHHHHHHHHTTC
T ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHH-HHHH-----HHHHHHHHHHcCC
Confidence 666666543312111 1233445566789999999999998754 23211 1111 8889999999999
Q ss_pred HHHHHHHHHHhHhccCCCCC-----hhhHHHHHHHHHhCCChhhHHHHHHHHHhc----CCCCCchhhHHHHHHHHHhhC
Q 042593 116 SNEALALFRRMAACEYTEPS-----EITILAVLPAIWKNGEVRNCQLIHGYGEKR----GFNAFDIHVSNCLIDTYAKCG 186 (352)
Q Consensus 116 ~~~a~~~~~~m~~~~~~~p~-----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g 186 (352)
++.|...+++......-.++ ..+++.+..++...|++++|...+++..+. +..+....++..+..+|...|
T Consensus 157 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~ 236 (378)
T 3q15_A 157 THVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSG 236 (378)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 99999999987433222222 347888999999999999999999888753 222213457888999999999
Q ss_pred ChHHHHHHHHHhcc-----CCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcC
Q 042593 187 CIFSASKLFEDTSV-----DRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECE 260 (352)
Q Consensus 187 ~~~~a~~~~~~~~~-----~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~ 260 (352)
++++|.+.|++... ..| ...++..+...+.+.|++++|...+++..+..... +
T Consensus 237 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---------------------~ 295 (378)
T 3q15_A 237 DDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR---------------------S 295 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT---------------------C
T ss_pred CHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc---------------------C
Confidence 99999999998765 433 36778889999999999999999999988743221 1
Q ss_pred CCCChhhHHHHHHHHHHcCC---hhHHHHHHhcCCCCCCCchhhHHHHHHHHhcccccCcccccccchh
Q 042593 261 VLPDIKHYGCLIDILERAGR---LEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLF 326 (352)
Q Consensus 261 ~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 326 (352)
.+.....+..+...|...|+ ..+|...+++....+.....+..+...|...|++++|...+.+.+.
T Consensus 296 ~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 296 HKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22223345666667777777 8888888887543323345667788889999999999999888764
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.20 E-value=1.9e-10 Score=109.16 Aligned_cols=162 Identities=9% Similarity=-0.019 Sum_probs=142.9
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CC-chhHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RN-LVTWNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~~i~~ 99 (352)
+..+|+.+..++.+.|++++|++.|++..+.. +-+..++..|..+|.+.|++++|++.|++..+ |+ ...
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a------- 79 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA------- 79 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------
Confidence 57889999999999999999999999999876 44678999999999999999999999999865 43 344
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHH
Q 042593 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS-EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178 (352)
Q Consensus 100 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 178 (352)
|+.+..++...|++++|++.|++..+. .|+ ...|..+..++.+.|++++|...+++..+.... +...+..+
T Consensus 80 ---~~nLg~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~--~~~a~~~L 151 (723)
T 4gyw_A 80 ---YSNMGNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD--FPDAYCNL 151 (723)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHhhh
Confidence 899999999999999999999998553 354 568999999999999999999999999988644 78899999
Q ss_pred HHHHHhhCChHHHHHHHHHhcc
Q 042593 179 IDTYAKCGCIFSASKLFEDTSV 200 (352)
Q Consensus 179 i~~~~~~g~~~~a~~~~~~~~~ 200 (352)
..+|...|++++|.+.+++..+
T Consensus 152 ~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 152 AHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHTTCCTTHHHHHHHHHH
T ss_pred hhHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999999887643
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.20 E-value=8.6e-10 Score=96.89 Aligned_cols=272 Identities=11% Similarity=-0.008 Sum_probs=187.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHhCCCCch----hhHHHHHHHHHhcCChhHHHHHhccCCC-----CCchhHHHHH
Q 042593 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHV----YVNTALGDMYVSLGFLKDSSKLFDELPE-----RNLVTWNVII 97 (352)
Q Consensus 27 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~i 97 (352)
.......+...|++++|...++......-..+. .+++.+...+...|++++|.+.+++..+ .+... ..
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~-- 93 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY-AL-- 93 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH-HH--
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH-HH--
Confidence 344455667899999999999998875422222 2567778888899999999999998764 22211 11
Q ss_pred HHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhcc---CCC--CC-hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCC--
Q 042593 98 TGLVKWTGIIDGYSRMNRSNEALALFRRMAACE---YTE--PS-EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNA-- 169 (352)
Q Consensus 98 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~--p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-- 169 (352)
. .++.+...+...|++++|...+++..... +.. |. ...+..+...+...|++++|...+++..+.....
T Consensus 94 ~---~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 170 (373)
T 1hz4_A 94 W---SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQP 170 (373)
T ss_dssp H---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCG
T ss_pred H---HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCc
Confidence 1 16677788999999999999999874322 211 22 2356678888999999999999999887654321
Q ss_pred -CchhhHHHHHHHHHhhCChHHHHHHHHHhccC--CC-CHhhHH-----HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCc
Q 042593 170 -FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD--RK-NLVSWT-----TIISGFAMHGMGKEAVENFERMQKVGLKPNR 240 (352)
Q Consensus 170 -~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~-~~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 240 (352)
.....+..+...+...|++++|...+++.... .+ +...+. ..+..+...|++++|...+++..+.. |.
T Consensus 171 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--~~- 247 (373)
T 1hz4_A 171 QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE--FA- 247 (373)
T ss_dssp GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC--CT-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCC--CC-
Confidence 02356778889999999999999999986432 21 111222 23345779999999999998876532 11
Q ss_pred chhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC---CC---Cc-hhhHHHHHHHHhccc
Q 042593 241 SWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ---IT---NV-VVWRTGFLRLLINSY 313 (352)
Q Consensus 241 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~---~~-~~~~~li~~~~~~g~ 313 (352)
........+..+...+...|++++|...+++.... .+ +. ..+..+...+...|+
T Consensus 248 -------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 308 (373)
T 1hz4_A 248 -------------------NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 308 (373)
T ss_dssp -------------------TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred -------------------cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCC
Confidence 00111234566778888889999888888766433 11 11 255666777888888
Q ss_pred ccCcccccccchh
Q 042593 314 FFSPITLNSQRLF 326 (352)
Q Consensus 314 ~~~a~~~~~~~~~ 326 (352)
.++|...+.+.+.
T Consensus 309 ~~~A~~~l~~al~ 321 (373)
T 1hz4_A 309 KSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877754
No 77
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.17 E-value=3.2e-10 Score=95.01 Aligned_cols=158 Identities=13% Similarity=0.029 Sum_probs=122.1
Q ss_pred HhcCChhHHHHHhccCCC-------CC-chhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhcc-----CCCCC-
Q 042593 70 VSLGFLKDSSKLFDELPE-------RN-LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACE-----YTEPS- 135 (352)
Q Consensus 70 ~~~g~~~~a~~~~~~m~~-------~~-~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~p~- 135 (352)
...|++++|+.+|++..+ ++ .....+ |..+...+...|++++|...+++..... +-.|.
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATM-------LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAV 84 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-------HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHH
Confidence 356777777777776653 23 222222 8889999999999999999999984431 22232
Q ss_pred hhhHHHHHHHHHhCCChhhHHHHHHHHHhc------CCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC--------
Q 042593 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKR------GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-------- 201 (352)
Q Consensus 136 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------- 201 (352)
..++..+...+...|++++|...+++..+. ...|....++..+..+|...|++++|.+.+++....
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 457899999999999999999999998765 222325778899999999999999999999987543
Q ss_pred CC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 202 RK-NLVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 202 ~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
.| ...++..+...|...|++++|...+++..+.
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33 3567888999999999999999999998763
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.14 E-value=1.2e-09 Score=88.92 Aligned_cols=195 Identities=11% Similarity=0.043 Sum_probs=147.5
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHh
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~ 102 (352)
|+..+......+...|++++|...|+...+..-+++...+..+..++...|++++|++.|++..+.++.....
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~------- 78 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANA------- 78 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHH-------
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHH-------
Confidence 6788999999999999999999999999988743777888789999999999999999999987533322222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh-------hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCC--chh
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE-------ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF--DIH 173 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 173 (352)
|..+...+...|++++|...|++..+... .+. ..|..+...+...|++++|...+++..+. .|. +..
T Consensus 79 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 154 (228)
T 4i17_A 79 YIGKSAAYRDMKNNQEYIATLTEGIKAVP--GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTD 154 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHH
Confidence 88899999999999999999999854332 223 45778888889999999999999998876 453 356
Q ss_pred hHHHHHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 042593 174 VSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235 (352)
Q Consensus 174 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 235 (352)
.+..+..+|...|+. .++++... ..+...|..... ...+.+++|...+++..+..
T Consensus 155 ~~~~l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 155 ALYSLGVLFYNNGAD-----VLRKATPLASSNKEKYASEKA--KADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcC
Confidence 777888888766543 33443322 234444544432 34456889999999888753
No 79
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.14 E-value=2.6e-09 Score=90.62 Aligned_cols=206 Identities=7% Similarity=-0.085 Sum_probs=149.9
Q ss_pred ccHHHHHHHHHhcCCcchHHHHHHHHHHh----CCCCc-hhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHH
Q 042593 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKV----GFQSH-VYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVII 97 (352)
Q Consensus 25 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i 97 (352)
..|......+...|++++|.+.|+...+. |-+++ ..+|+.+..+|.+.|++++|+..|++..+ ++...+....
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 46888888999999999999999988764 32222 56899999999999999999999988754 1110001011
Q ss_pred HHHHhHHHHHHHHHhc-CCHHHHHHHHHHhHhccCCCCC----hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCch
Q 042593 98 TGLVKWTGIIDGYSRM-NRSNEALALFRRMAACEYTEPS----EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDI 172 (352)
Q Consensus 98 ~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 172 (352)
. .|+.+...|... |++++|+..|++......-..+ ..++..+...+.+.|++++|...+++..+........
T Consensus 118 ~---~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 194 (292)
T 1qqe_A 118 N---FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS 194 (292)
T ss_dssp H---HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred H---HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcc
Confidence 1 188889999996 9999999999998442211111 3468889999999999999999999999876543121
Q ss_pred -----hhHHHHHHHHHhhCChHHHHHHHHHhccCCCCH------hhHHHHHHHHH--cCCCHHHHHHHHHHHHh
Q 042593 173 -----HVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL------VSWTTIISGFA--MHGMGKEAVENFERMQK 233 (352)
Q Consensus 173 -----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~li~~~~--~~~~~~~a~~~~~~m~~ 233 (352)
..+..+..++...|++++|...|++.....|+. ..+..++.++. ..+++++|...|+++..
T Consensus 195 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 156788889999999999999999987665532 23445566664 45678888888876543
No 80
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.13 E-value=7.5e-09 Score=95.47 Aligned_cols=213 Identities=11% Similarity=0.057 Sum_probs=167.0
Q ss_pred hHHHHHHHHHHhCCCCchhhHHHHHHHHHh-------cCChh-------HHHHHhccCCC---CC-chhHHHHHHHHHhH
Q 042593 42 LGTQLHAVFSKVGFQSHVYVNTALGDMYVS-------LGFLK-------DSSKLFDELPE---RN-LVTWNVIITGLVKW 103 (352)
Q Consensus 42 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~---~~-~~~~~~~i~~~~~~ 103 (352)
.+..+|+...... +.++..|..++..+.+ .|+++ +|..+|++..+ |+ ... |
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l----------~ 324 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL----------Y 324 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH----------H
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH----------H
Confidence 6677888888764 5578888888888876 79987 89999998764 43 233 8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh--hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 042593 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEPSE--ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181 (352)
Q Consensus 104 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 181 (352)
..++..+.+.|++++|..+|+++.. +.|+. ..|...+..+.+.|++++|..+++...+.... +...|......
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~--~~~~~~~~a~~ 399 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART--RHHVYVTAALM 399 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC--CTHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC--chHHHHHHHHH
Confidence 8888999999999999999999954 34543 47888888888999999999999999876432 33444332222
Q ss_pred -HHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhc
Q 042593 182 -YAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEEC 259 (352)
Q Consensus 182 -~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~ 259 (352)
+...|+.++|.++|+...+..| +...|..++..+.+.|+.++|..+|++....+.
T Consensus 400 ~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~----------------------- 456 (530)
T 2ooe_A 400 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS----------------------- 456 (530)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC-----------------------
T ss_pred HHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC-----------------------
Confidence 3468999999999998766644 688999999999999999999999999887531
Q ss_pred CCCC--ChhhHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 260 EVLP--DIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 260 ~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
..| ....|...+....+.|+.+.+..+.+++...
T Consensus 457 -~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 457 -LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp -SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 122 3457888888888999999999998887654
No 81
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.12 E-value=9.6e-09 Score=86.41 Aligned_cols=198 Identities=15% Similarity=0.016 Sum_probs=142.2
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCc--hhHHHHHHHHHhHHHHHHHHHhcCCHHHHH
Q 042593 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL--VTWNVIITGLVKWTGIIDGYSRMNRSNEAL 120 (352)
Q Consensus 43 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~i~~~~~~~~li~~~~~~~~~~~a~ 120 (352)
+...++...+.+ +++..++..+..++...|++++|++++.+...++. ..... +..++..+.+.|+.+.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea-------~~l~vqi~L~~~r~d~A~ 156 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTEL-------LLLAIEVALLNNNVSTAS 156 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHH-------HHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHH-------HHHHHHHHHHCCCHHHHH
Confidence 667777776655 55666667888999999999999999998754432 22222 777888999999999999
Q ss_pred HHHHHhHhccCCCC-----ChhhHHHHHHHHH--h--CCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHH
Q 042593 121 ALFRRMAACEYTEP-----SEITILAVLPAIW--K--NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191 (352)
Q Consensus 121 ~~~~~m~~~~~~~p-----~~~t~~~ll~~~~--~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 191 (352)
+.+++| ... .| +..+...+..++. . .++..+|..+|+++.+.. | +...-..++.++.+.|++++|
T Consensus 157 k~l~~~-~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p-~~~~~~lLln~~~~~g~~~eA 230 (310)
T 3mv2_B 157 TIFDNY-TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--P-TWKTQLGLLNLHLQQRNIAEA 230 (310)
T ss_dssp HHHHHH-HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--C-SHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHH-Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--C-CcccHHHHHHHHHHcCCHHHH
Confidence 999999 433 46 3566666666633 2 338999999999987653 2 323334555589999999999
Q ss_pred HHHHHHhccC-----------CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh-hHhHHHHHHHHHHh
Q 042593 192 SKLFEDTSVD-----------RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI-GEEGLKFFDKMVEE 258 (352)
Q Consensus 192 ~~~~~~~~~~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~~~a~~~~~~m~~~ 258 (352)
++.++.+.+. +.|+.+...+|......|+ +|.+++.++++. .|+..... ..+....|+++...
T Consensus 231 e~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp~i~d~~~k~~~Fd~~~~k 305 (310)
T 3mv2_B 231 QGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHAFIKHHQEIDAKFDELVRK 305 (310)
T ss_dssp HHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHHHHH
Confidence 9999876542 3367777566666666676 889999999884 46665555 77777777777764
No 82
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.11 E-value=1.7e-09 Score=88.13 Aligned_cols=161 Identities=10% Similarity=-0.127 Sum_probs=124.8
Q ss_pred CChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHH
Q 042593 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTII 212 (352)
Q Consensus 134 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li 212 (352)
.|...+......+...|++++|...++...+....+ +...+..+..++...|++++|.+.|++.....| +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQ-DSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 345678888888899999999999999998877534 667777789999999999999999998876655 567788899
Q ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCC
Q 042593 213 SGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292 (352)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 292 (352)
.+|...|++++|...+++..+.. |+...+. .. -...|..+...+.+.|++++|.+.+++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~--------~~---------~~~~~~~~g~~~~~~~~~~~A~~~~~~al 144 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIE--------KL---------YAIYYLKEGQKFQQAGNIEKAEENYKHAT 144 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHH--------HH---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHH--------HH---------HHHHHHHHhHHHHHhccHHHHHHHHHHHH
Confidence 99999999999999999988742 2210000 00 01457778888889999999999998888
Q ss_pred CC-CC--CchhhHHHHHHHHhcccc
Q 042593 293 SQ-IT--NVVVWRTGFLRLLINSYF 314 (352)
Q Consensus 293 ~~-~~--~~~~~~~li~~~~~~g~~ 314 (352)
.. +. +...|..+...|...|+.
T Consensus 145 ~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 145 DVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCcccHHHHHHHHHHHHHHHHH
Confidence 77 44 467888888888888877
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.08 E-value=6.7e-09 Score=91.47 Aligned_cols=230 Identities=12% Similarity=-0.049 Sum_probs=168.1
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHhCC-CC----chhhHHHHHHHHHhcCChhHHHHHhccCCC-----CCchhHHHHHHH
Q 042593 30 LIRTCVTLSYPNLGTQLHAVFSKVGF-QS----HVYVNTALGDMYVSLGFLKDSSKLFDELPE-----RNLVTWNVIITG 99 (352)
Q Consensus 30 ll~~~~~~g~~~~a~~~~~~m~~~~~-~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~i~~ 99 (352)
....+...|++++|...++...+... .+ ...++..+..+|...|+++.|...+++..+ ++.... ...+
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~--~~~~ 184 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR--TIQS 184 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH--HHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh--HHHH
Confidence 34455689999999999999886421 12 346788999999999999999998887653 221111 1111
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC----hhhHHHHHHHHHhCCChhhHHHHHHHHHhc----CCCCCc
Q 042593 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS----EITILAVLPAIWKNGEVRNCQLIHGYGEKR----GFNAFD 171 (352)
Q Consensus 100 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~ 171 (352)
++.+...|...|++++|.+.|++......-.++ ..++..+..++...|++++|...+++..+. +.+. .
T Consensus 185 ---~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~ 260 (378)
T 3q15_A 185 ---LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-L 260 (378)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-H
T ss_pred ---HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-H
Confidence 889999999999999999999987432211122 246888899999999999999999988762 2222 5
Q ss_pred hhhHHHHHHHHHhhCChHHHHHHHHHhccC-----CC-CHhhHHHHHHHHHcCCC---HHHHHHHHHHHHhcCCCCCcch
Q 042593 172 IHVSNCLIDTYAKCGCIFSASKLFEDTSVD-----RK-NLVSWTTIISGFAMHGM---GKEAVENFERMQKVGLKPNRSW 242 (352)
Q Consensus 172 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~~~~ 242 (352)
..++..+..+|.+.|++++|.+.+++.... .+ ....++.+-..+...++ +.+|...+++ .+
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~------- 330 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KN------- 330 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TT-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CC-------
Confidence 778889999999999999999999986442 22 23456666667777788 6666666665 11
Q ss_pred hhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCC
Q 042593 243 RIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIP 292 (352)
Q Consensus 243 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 292 (352)
..+.....+..+...|.+.|++++|.+.|++..
T Consensus 331 -----------------~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 331 -----------------LHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----------------ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 111234466789999999999999999988754
No 84
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.08 E-value=6.7e-09 Score=76.27 Aligned_cols=128 Identities=14% Similarity=0.178 Sum_probs=111.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
|..+...+...|++++|..+++++.. .. +.+...+..+...+...|++++|...++++.+.+.. +...+..+..++
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~ 79 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALE-LD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHH-cC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC--chHHHHHHHHHH
Confidence 77888899999999999999999944 32 235668888999999999999999999999887643 677888999999
Q ss_pred HhhCChHHHHHHHHHhccCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 183 AKCGCIFSASKLFEDTSVDR-KNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
...|++++|.+.++++.... .+...+..+...+...|++++|...++++.+.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 99999999999999986654 46788999999999999999999999998874
No 85
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.03 E-value=3.5e-08 Score=86.54 Aligned_cols=242 Identities=13% Similarity=0.028 Sum_probs=169.8
Q ss_pred cHHHHHHHHHhcCCcchHHHHHHHHHHhCCC-Cc----hhhHHHHHHHHHhcCChhHHHHHhccCCC-----CCc-hhHH
Q 042593 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQ-SH----VYVNTALGDMYVSLGFLKDSSKLFDELPE-----RNL-VTWN 94 (352)
Q Consensus 26 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~-~~~~ 94 (352)
+++.+...+...|++++|...++...+..-. .+ ..++..+...+...|++++|...+++..+ .+. ....
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 4666777888999999999999987753211 11 23467788889999999999999988753 111 0001
Q ss_pred HHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccC-CCC--ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCc
Q 042593 95 VIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEY-TEP--SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD 171 (352)
Q Consensus 95 ~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 171 (352)
... +..+...+...|++++|...+++...... ..+ ...++..+...+...|++++|...+++.......+..
T Consensus 135 ~~~-----~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~ 209 (373)
T 1hz4_A 135 EFL-----VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY 209 (373)
T ss_dssp HHH-----HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC
T ss_pred HHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCc
Confidence 111 67788889999999999999998743221 111 1246778888899999999999999988765322202
Q ss_pred hhhHH-----HHHHHHHhhCChHHHHHHHHHhccCCCC-----HhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcc
Q 042593 172 IHVSN-----CLIDTYAKCGCIFSASKLFEDTSVDRKN-----LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241 (352)
Q Consensus 172 ~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 241 (352)
...+. ..+..+...|++++|...+++.....+. ...+..+...+...|++++|...+++.....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~------ 283 (373)
T 1hz4_A 210 HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENA------ 283 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------
T ss_pred chhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH------
Confidence 11222 2345578999999999999998655332 2356777888999999999999999876531
Q ss_pred hhhhHhHHHHHHHHHHhcCCCCCh-hhHHHHHHHHHHcCChhHHHHHHhcCCC
Q 042593 242 WRIGEEGLKFFDKMVEECEVLPDI-KHYGCLIDILERAGRLEQAEEVASGIPS 293 (352)
Q Consensus 242 ~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 293 (352)
... +..++. ..+..+..++...|+.++|...+++...
T Consensus 284 --------------~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 284 --------------RSL-RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp --------------HHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --------------HhC-cchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 011 222233 3666778889999999999998887654
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.03 E-value=2.4e-08 Score=84.62 Aligned_cols=214 Identities=9% Similarity=-0.066 Sum_probs=150.5
Q ss_pred CcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC-----CCchhHHHHHHHHHhHHHHHHHHHhc
Q 042593 39 YPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE-----RNLVTWNVIITGLVKWTGIIDGYSRM 113 (352)
Q Consensus 39 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~i~~~~~~~~li~~~~~~ 113 (352)
++++|...|+.. ...|...|++++|...|++..+ .+... .+. .|+.+...|...
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~-----~~~~lg~~~~~~ 90 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDE-AGN-----TYVEAYKCFKSG 90 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHH-HHH-----HHHHHHHHHHHT
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHH-HHH-----HHHHHHHHHHHC
Confidence 366666666554 5567889999999999887653 12110 000 189999999999
Q ss_pred CCHHHHHHHHHHhHhccCCCCC----hhhHHHHHHHHHhC-CChhhHHHHHHHHHhcCCCCC----chhhHHHHHHHHHh
Q 042593 114 NRSNEALALFRRMAACEYTEPS----EITILAVLPAIWKN-GEVRNCQLIHGYGEKRGFNAF----DIHVSNCLIDTYAK 184 (352)
Q Consensus 114 ~~~~~a~~~~~~m~~~~~~~p~----~~t~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~ 184 (352)
|++++|+..|++......-..+ ..++..+...+... |++++|...+++..+...... ...+++.+..++.+
T Consensus 91 g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~ 170 (292)
T 1qqe_A 91 GNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL 170 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 9999999999987432211112 34788899999996 999999999999876532110 14578889999999
Q ss_pred hCChHHHHHHHHHhccCCCCH--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHH
Q 042593 185 CGCIFSASKLFEDTSVDRKNL--------VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMV 256 (352)
Q Consensus 185 ~g~~~~a~~~~~~~~~~~~~~--------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~ 256 (352)
.|++++|...|++.....|+. ..|..+..++...|++++|...|++..+. .|+.
T Consensus 171 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~---------------- 232 (292)
T 1qqe_A 171 DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNF---------------- 232 (292)
T ss_dssp TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------------------
T ss_pred hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCC----------------
Confidence 999999999999977654322 15677888899999999999999998763 2210
Q ss_pred HhcCCCCChhhHHHHHHHHH--HcCChhHHHHHHhcCCCC
Q 042593 257 EECEVLPDIKHYGCLIDILE--RAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 257 ~~~~~~p~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~ 294 (352)
........+..++.++. ..+++++|...|+.+...
T Consensus 233 ---~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 233 ---ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp --------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred ---CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 00111234455666664 467799999999888765
No 87
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.02 E-value=3.7e-09 Score=100.46 Aligned_cols=169 Identities=12% Similarity=-0.031 Sum_probs=140.4
Q ss_pred HhcCCcchHHHHHHHHH--------HhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--C-CchhHHHHHHHHHhH
Q 042593 35 VTLSYPNLGTQLHAVFS--------KVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--R-NLVTWNVIITGLVKW 103 (352)
Q Consensus 35 ~~~g~~~~a~~~~~~m~--------~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~~i~~~~~~ 103 (352)
...|++++|++.++... +.. +.+...+..+..++...|++++|++.|++..+ | +... |
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a----------~ 470 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRL----------V 470 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHH----------H
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHH----------H
Confidence 78899999999999988 332 45678899999999999999999999999876 3 3334 8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhccCCCC-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEP-SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 104 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
..+..++...|++++|.+.|++..+. .| +...+..+..++.+.|++++ ...+++..+.+.. +...|..+..++
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~--~~~a~~~lg~~~ 544 (681)
T 2pzi_A 471 WYRAVAELLTGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG--VISAAFGLARAR 544 (681)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc--hHHHHHHHHHHH
Confidence 88889999999999999999998543 34 45688899999999999999 9999999987654 788999999999
Q ss_pred HhhCChHHHHHHHHHhccCCCC-HhhHHHHHHHHHcCCC
Q 042593 183 AKCGCIFSASKLFEDTSVDRKN-LVSWTTIISGFAMHGM 220 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~~~~-~~~~~~li~~~~~~~~ 220 (352)
.+.|++++|.+.|++.....|+ ...+..+..++...++
T Consensus 545 ~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 545 SAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999998877665 6778888888777665
No 88
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.99 E-value=4.1e-09 Score=95.19 Aligned_cols=268 Identities=12% Similarity=-0.025 Sum_probs=125.4
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCCh---hHHHHHhccCCCCCchhHHHHHHHHHhHHHH
Q 042593 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFL---KDSSKLFDELPERNLVTWNVIITGLVKWTGI 106 (352)
Q Consensus 30 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~l 106 (352)
+...+.+.|++++|.++|+...+.| ++..+..|...|...|+. ++|...|++..+.++.. +..+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A----------~~~L 75 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRA----------QARL 75 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------C----------HHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHH----------HHHH
Confidence 5677788999999999999998887 344455567777778888 89999999987665555 5556
Q ss_pred HHHHHhcC-----CHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhh---HHHHHHHHHhcCC-----------
Q 042593 107 IDGYSRMN-----RSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRN---CQLIHGYGEKRGF----------- 167 (352)
Q Consensus 107 i~~~~~~~-----~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~----------- 167 (352)
...+...+ +.++|...|++. ...|. | ..+..+...|...+..+. +...+......|.
T Consensus 76 g~~~~~~~~~~~~~~~~A~~~~~~A-a~~g~-~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y 151 (452)
T 3e4b_A 76 GRLLAAKPGATEAEHHEAESLLKKA-FANGE-G--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLY 151 (452)
T ss_dssp HHHHHTC--CCHHHHHHHHHHHHHH-HHTTC-S--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHH
T ss_pred HHHHHhCCCCCCcCHHHHHHHHHHH-HHCCC-H--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 66454544 788999999998 44332 2 245555555554443222 2233332222221
Q ss_pred ---------------------CCCchhhHHHHHHHHHhhC---ChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcC----
Q 042593 168 ---------------------NAFDIHVSNCLIDTYAKCG---CIFSASKLFEDTSVD-RKNLVSWTTIISGFAMH---- 218 (352)
Q Consensus 168 ---------------------~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~---- 218 (352)
.. ++..+..|...|.+.| +.++|.+.|+..... .++...+..|...|...
T Consensus 152 ~~~~~~~~~~~~a~~~~~~a~~~-~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 152 RTQGTYDQHLDDVERICKAALNT-TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp HHHTCGGGGHHHHHHHHHHHTTT-CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSS
T ss_pred HcCCCcccCHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCC
Confidence 11 2234445555555555 555555555554333 23333334444444333
Q ss_pred CCHHHHHHHHHHHHhcCCCCCcch------h------hhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcC-----Ch
Q 042593 219 GMGKEAVENFERMQKVGLKPNRSW------R------IGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAG-----RL 281 (352)
Q Consensus 219 ~~~~~a~~~~~~m~~~~~~p~~~~------~------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-----~~ 281 (352)
++.++|...|++.. .|.. .... + ..++|..+|++..+. | +...+..|...|. .| +.
T Consensus 231 ~d~~~A~~~~~~aa-~g~~-~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PGYP-ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp CCHHHHHHHHHHHG-GGST-HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CCHHHHHHHHHHHc-CCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 45555555555554 2111 1000 0 045555555555544 3 3444445555554 33 56
Q ss_pred hHHHHHHhcCCCCCCCchhhHHHHHHHHh----cccccCcccccccc
Q 042593 282 EQAEEVASGIPSQITNVVVWRTGFLRLLI----NSYFFSPITLNSQR 324 (352)
Q Consensus 282 ~~A~~~~~~m~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~ 324 (352)
++|.+.|++.. +.+...+..|...|.. ..++++|+..+.+.
T Consensus 304 ~~A~~~~~~Aa--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 348 (452)
T 3e4b_A 304 KAAEAHFEKAV--GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTA 348 (452)
T ss_dssp HHHHHHHHTTT--TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 66666666555 2344555555544444 22444555544444
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.99 E-value=1.3e-08 Score=74.67 Aligned_cols=128 Identities=13% Similarity=0.105 Sum_probs=108.2
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHH
Q 042593 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFA 216 (352)
Q Consensus 138 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~ 216 (352)
.+..+...+...|++++|..+++++.+.... +...+..+...+...|++++|.+.++++... +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc--chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4677888899999999999999999887543 6778888999999999999999999987655 446778889999999
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCC
Q 042593 217 MHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPS 293 (352)
Q Consensus 217 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 293 (352)
..|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~--------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD--------------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC--------------------------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 9999999999999988742 22566788899999999999999999987643
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.98 E-value=3.8e-08 Score=81.83 Aligned_cols=166 Identities=12% Similarity=0.030 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHhccCCC--CCch-hHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-
Q 042593 60 YVNTALGDMYVSLGFLKDSSKLFDELPE--RNLV-TWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS- 135 (352)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~-~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~- 135 (352)
..+-.+...+.+.|++++|...|+++.+ |+.. ...+ +..+..++.+.|++++|...|++......-.|.
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a-------~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 88 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADA-------QFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV 88 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHH-------HHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence 3334444444555555555555555443 2210 0111 444445555555555555555555332211112
Q ss_pred hhhHHHHHHHHHh--------CCChhhHHHHHHHHHhcCCCCCchhhH-----------------HHHHHHHHhhCChHH
Q 042593 136 EITILAVLPAIWK--------NGEVRNCQLIHGYGEKRGFNAFDIHVS-----------------NCLIDTYAKCGCIFS 190 (352)
Q Consensus 136 ~~t~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------------~~li~~~~~~g~~~~ 190 (352)
...+..+..++.. .|++++|...++++.+.... +.... ..+..+|.+.|++++
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN--HELVDDATQKIRELRAKLARKQYEAARLYERRELYEA 166 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 1234444444444 55555555555555544322 22222 456777888888888
Q ss_pred HHHHHHHhccCCCC----HhhHHHHHHHHHcC----------CCHHHHHHHHHHHHhc
Q 042593 191 ASKLFEDTSVDRKN----LVSWTTIISGFAMH----------GMGKEAVENFERMQKV 234 (352)
Q Consensus 191 a~~~~~~~~~~~~~----~~~~~~li~~~~~~----------~~~~~a~~~~~~m~~~ 234 (352)
|...|+.+....|+ ...+..+..+|... |++++|...|+++.+.
T Consensus 167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 88888887655443 34566677777655 7788888888887764
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.98 E-value=9e-09 Score=85.63 Aligned_cols=172 Identities=7% Similarity=-0.094 Sum_probs=134.9
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCc---hhhHHHHHHHHHhcCChhHHHHHhccCCC--CCc-hhHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSH---VYVNTALGDMYVSLGFLKDSSKLFDELPE--RNL-VTWNVI 96 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~-~~~~~~ 96 (352)
+...+-.....+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|+..|++..+ |+. ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a- 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA- 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH-
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH-
Confidence 56777788889999999999999999998865 223 57788899999999999999999999875 432 22122
Q ss_pred HHHHHhHHHHHHHHHh--------cCCHHHHHHHHHHhHhccCCCCCh-hhH-----------------HHHHHHHHhCC
Q 042593 97 ITGLVKWTGIIDGYSR--------MNRSNEALALFRRMAACEYTEPSE-ITI-----------------LAVLPAIWKNG 150 (352)
Q Consensus 97 i~~~~~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~~p~~-~t~-----------------~~ll~~~~~~~ 150 (352)
+..+..++.. .|++++|...|++..... |+. ... ..+...+.+.|
T Consensus 92 ------~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g 162 (261)
T 3qky_A 92 ------EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKLARKQYEAARLYERRE 162 (261)
T ss_dssp ------HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ------HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 6677788888 999999999999995533 332 233 56678899999
Q ss_pred ChhhHHHHHHHHHhcCCCCC-chhhHHHHHHHHHhh----------CChHHHHHHHHHhccCCCCH
Q 042593 151 EVRNCQLIHGYGEKRGFNAF-DIHVSNCLIDTYAKC----------GCIFSASKLFEDTSVDRKNL 205 (352)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~ 205 (352)
++++|...++.+.+.....+ ....+..+..+|... |++++|...|+.+....|+.
T Consensus 163 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 163 LYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 99999999999988754321 345777888888866 88999999999987666654
No 92
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.97 E-value=1.7e-08 Score=78.61 Aligned_cols=157 Identities=9% Similarity=-0.044 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCC--C-CchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhh
Q 042593 62 NTALGDMYVSLGFLKDSSKLFDELPE--R-NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEIT 138 (352)
Q Consensus 62 ~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t 138 (352)
+..+...+...|++++|+..|++..+ | +... |..+...+...|++++|...|++..... |+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a----------~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~ 75 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDV----------KLAKADCLLETKQFELAQELLATIPLEY---QDNSY 75 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHH----------HHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH----------HHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHH
Confidence 33445555666666666666666654 2 2222 5556666666666666666666662222 22222
Q ss_pred HHHHHHH-HHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCC---HhhHHHHHHH
Q 042593 139 ILAVLPA-IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN---LVSWTTIISG 214 (352)
Q Consensus 139 ~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~li~~ 214 (352)
+...... +...+...++...++...+.... +...+..+..++...|++++|.+.|++.....|+ ...+..+...
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~ 153 (176)
T 2r5s_A 76 KSLIAKLELHQQAAESPELKRLEQELAANPD--NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDI 153 (176)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHH
Confidence 2111111 11222233456666666655433 5666777777777777777777777776655443 4466777777
Q ss_pred HHcCCCHHHHHHHHHHHHh
Q 042593 215 FAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 215 ~~~~~~~~~a~~~~~~m~~ 233 (352)
+...|+.++|...|++...
T Consensus 154 ~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 154 LSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHCSSCHHHHHHHHHHH
T ss_pred HHHhCCCCcHHHHHHHHHH
Confidence 7777777777777766543
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.92 E-value=1.7e-07 Score=78.90 Aligned_cols=245 Identities=9% Similarity=0.002 Sum_probs=159.3
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHH
Q 042593 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGY 110 (352)
Q Consensus 31 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~ 110 (352)
++-.--.|++..++.- ..+..-......---+.++|...|+.+... -..|.... ...+ ..|
T Consensus 20 ikn~fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-----~~~~~~~a----------~~~l-a~~ 80 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQD-----PTSKLGKV----------LDLY-VQF 80 (310)
T ss_dssp HHHHHTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCCC-----SSSTTHHH----------HHHH-HHH
T ss_pred HHHHHHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccCC-----CCCHHHHH----------HHHH-HHH
Confidence 4555567888777762 222111111122223457888888876421 11133222 2222 222
Q ss_pred HhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHH
Q 042593 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190 (352)
Q Consensus 111 ~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 190 (352)
...+ |+..|++. ...+ .++..++..+..++...|+.++|.+++.+....+..+.+...+..++..+.+.|+.+.
T Consensus 81 ~~~~----a~~~l~~l-~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~ 154 (310)
T 3mv2_B 81 LDTK----NIEELENL-LKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVST 154 (310)
T ss_dssp HTTT----CCHHHHHT-TTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHH
T ss_pred hccc----HHHHHHHH-HhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHH
Confidence 2322 77888887 4333 4566667788899999999999999999987776522378889999999999999999
Q ss_pred HHHHHHHhccCCC-----CHhhHHHHHHH--HHcCC--CHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCC
Q 042593 191 ASKLFEDTSVDRK-----NLVSWTTIISG--FAMHG--MGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEV 261 (352)
Q Consensus 191 a~~~~~~~~~~~~-----~~~~~~~li~~--~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~ 261 (352)
|.+.++.|.+..| +-.+...|..+ ....| +.++|..+|+++.+.
T Consensus 155 A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--------------------------- 207 (310)
T 3mv2_B 155 ASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--------------------------- 207 (310)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---------------------------
T ss_pred HHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---------------------------
Confidence 9999999977677 35555666655 33334 899999999998753
Q ss_pred CCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-----------CCCchhhHHHHHHHHhcccccCcccccccchhhhh
Q 042593 262 LPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-----------ITNVVVWRTGFLRLLINSYFFSPITLNSQRLFFFP 329 (352)
Q Consensus 262 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 329 (352)
.|+..+-..++.++.+.|++++|++.++.+... +.|..+.-.+|......|+ +|.++..+.....|
T Consensus 208 ~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 208 FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 234333344455899999999999999765432 2355666455555555676 77777777665444
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.91 E-value=9.7e-08 Score=77.53 Aligned_cols=186 Identities=10% Similarity=-0.065 Sum_probs=114.2
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCC-C-chhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchh-HHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQ-S-HVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVT-WNVII 97 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~-~~~~i 97 (352)
+...+......+.+.|++++|...|+.+.+..-. | ....+..+..+|.+.|++++|+..|+++.+ |+... ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a-- 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV-- 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH--
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHH--
Confidence 3445556667777888888888888888775411 1 134666777788888888888888888764 43322 112
Q ss_pred HHHHhHHHHHHHHHh------------------cCCHHHHHHHHHHhHhccCCCCChh-hHHHHHHHHHhCCChhhHHHH
Q 042593 98 TGLVKWTGIIDGYSR------------------MNRSNEALALFRRMAACEYTEPSEI-TILAVLPAIWKNGEVRNCQLI 158 (352)
Q Consensus 98 ~~~~~~~~li~~~~~------------------~~~~~~a~~~~~~m~~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~ 158 (352)
+..+..++.. .|++++|...|+++.+. .|+.. .......
T Consensus 81 -----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~-------------- 138 (225)
T 2yhc_A 81 -----MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKR-------------- 138 (225)
T ss_dssp -----HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHH--------------
T ss_pred -----HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHH--------------
Confidence 3333334433 34555555555555221 12221 1111000
Q ss_pred HHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCH----hhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 159 HGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL----VSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
...+... .......+...|.+.|++++|...|+++....|+. ..+..+..++.+.|+.++|.+.++.+...
T Consensus 139 l~~~~~~-----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 139 LVFLKDR-----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 0000000 01111355678889999999999999987766643 56888899999999999999999998886
Q ss_pred CCC
Q 042593 235 GLK 237 (352)
Q Consensus 235 ~~~ 237 (352)
+..
T Consensus 214 ~~~ 216 (225)
T 2yhc_A 214 SSN 216 (225)
T ss_dssp CSC
T ss_pred CCC
Confidence 543
No 95
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.91 E-value=3.6e-08 Score=76.77 Aligned_cols=162 Identities=12% Similarity=0.012 Sum_probs=124.6
Q ss_pred cccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCc-hhHHHHHHHHHh
Q 042593 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL-VTWNVIITGLVK 102 (352)
Q Consensus 24 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~i~~~~~ 102 (352)
...+......+.+.|++++|...++...+.. +.+...+..+..++...|++++|+..|++..+.++ ..+
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~--------- 75 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSY--------- 75 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHH---------
Confidence 3456777788999999999999999888765 45678899999999999999999999999876322 121
Q ss_pred HHHHHH-HHHhcCCHHHHHHHHHHhHhccCCCC-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHH
Q 042593 103 WTGIID-GYSRMNRSNEALALFRRMAACEYTEP-SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180 (352)
Q Consensus 103 ~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 180 (352)
+..+.. .+...++..+|...+++... ..| +...+..+..++...|++++|...++++.+....+.+...+..+..
T Consensus 76 ~~~~~~~~~~~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~ 152 (176)
T 2r5s_A 76 KSLIAKLELHQQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMD 152 (176)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHH
Confidence 111111 11222333457888888744 235 4678889999999999999999999999988765424668899999
Q ss_pred HHHhhCChHHHHHHHHHh
Q 042593 181 TYAKCGCIFSASKLFEDT 198 (352)
Q Consensus 181 ~~~~~g~~~~a~~~~~~~ 198 (352)
++...|+.++|...|++.
T Consensus 153 ~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 153 ILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHCSSCHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHHHHH
Confidence 999999999999999865
No 96
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.89 E-value=8.3e-08 Score=81.10 Aligned_cols=163 Identities=11% Similarity=-0.020 Sum_probs=123.0
Q ss_pred CCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CC-chhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCC
Q 042593 56 QSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RN-LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT 132 (352)
Q Consensus 56 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 132 (352)
+.+...+..+...+...|++++|+..|++..+ |+ ... +..+...+.+.|++++|...+++... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a----------~~~la~~~~~~g~~~~A~~~l~~~~~-~-- 180 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEI----------GLLLAETLIALNRSEDAEAVLXTIPL-Q-- 180 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHH----------HHHHHHHHHHTTCHHHHHHHHTTSCG-G--
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhH----------HHHHHHHHHHCCCHHHHHHHHHhCch-h--
Confidence 55566777788888888999999999888764 43 333 77788888889999999999888833 2
Q ss_pred CCChhh-HHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCC---HhhH
Q 042593 133 EPSEIT-ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN---LVSW 208 (352)
Q Consensus 133 ~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~ 208 (352)
.|+... .......+...++.++|...+++..+.... +...+..+..++...|++++|.+.|+++....|+ ...+
T Consensus 181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~--~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPE--DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc--cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 344432 223333466777788888888888877544 7788888889999999999999999887766553 5678
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 209 TTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 209 ~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
..+...+...|+.++|...+++...
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 8888889899998888888877553
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.88 E-value=3.2e-08 Score=83.69 Aligned_cols=162 Identities=7% Similarity=-0.038 Sum_probs=108.4
Q ss_pred ccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHHHHh
Q 042593 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGLVK 102 (352)
Q Consensus 25 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~~~~ 102 (352)
..+..+...+.+.|++++|...++...+.. +-+...+..+..++...|++++|...+++... |+... .
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~--~------- 187 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRY--Q------- 187 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH--H-------
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHH--H-------
Confidence 445555666677788888888888777765 44566777777788888888888888887765 43221 0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
.......+...++.++|...+++..... +.+...+..+...+...|++++|...+.++.+......+...+..+..++
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~--P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAEN--PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 2222233556666777777777763322 23455677777777888888888888888777655432366777788888
Q ss_pred HhhCChHHHHHHHHHh
Q 042593 183 AKCGCIFSASKLFEDT 198 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~ 198 (352)
...|+.++|...+++.
T Consensus 266 ~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 266 AALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHCTTCHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHH
Confidence 8888877777777653
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.87 E-value=1.8e-08 Score=95.65 Aligned_cols=174 Identities=14% Similarity=-0.010 Sum_probs=143.3
Q ss_pred HhcCCHHHHHHHHHHhHh-----ccCCCC-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHh
Q 042593 111 SRMNRSNEALALFRRMAA-----CEYTEP-SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK 184 (352)
Q Consensus 111 ~~~~~~~~a~~~~~~m~~-----~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 184 (352)
...|++++|++.+++... .....| +...+..+..++...|++++|...+++..+.... +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW--RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc--hHHHHHHHHHHHHH
Confidence 788999999999999841 112234 4567888999999999999999999999987544 78899999999999
Q ss_pred hCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCC
Q 042593 185 CGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLP 263 (352)
Q Consensus 185 ~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p 263 (352)
.|++++|.+.|++..+..| +...|..+..++.+.|++++ .+.|++..+.. | -
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P------------------------~ 532 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--D------------------------G 532 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--T------------------------T
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--C------------------------c
Confidence 9999999999999876655 67889999999999999999 99999988742 2 2
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhccc
Q 042593 264 DIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSY 313 (352)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~ 313 (352)
+...|..+..++.+.|++++|.+.|++.... +.+...|..+...+...++
T Consensus 533 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 533 VISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 5678899999999999999999999999887 5556788888888877665
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.87 E-value=5.1e-08 Score=78.18 Aligned_cols=178 Identities=6% Similarity=-0.064 Sum_probs=84.0
Q ss_pred cHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHH
Q 042593 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTG 105 (352)
Q Consensus 26 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~ 105 (352)
.+-.....+.+.|++++|...|+...+.. +-+...+... .. .. .......+ ++.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~-----~~-------------~~-~~~~~~~~------~~~ 59 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWT-----NV-------------DK-NSEISSKL------ATE 59 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHH-----HS-------------CT-TSHHHHHH------HHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHh-----hh-------------cc-hhhhhHHH------HHH
Confidence 34445567778999999999999988765 2234444430 00 00 00000000 333
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhh
Q 042593 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC 185 (352)
Q Consensus 106 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 185 (352)
+..++.+.|++++|...|++..+.. +-+...+..+..++...|++++|...+++..+.... +..++..+..+|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD--NLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHH
Confidence 4445555555555555555552211 112334555555555555555555555555554332 445555555554433
Q ss_pred CC--hHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 186 GC--IFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 186 g~--~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
|+ .+.+...++......|....+...-.++...|++++|...|++..+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 32 2333444444322222222222333334445555555555555554
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.85 E-value=1.1e-07 Score=76.17 Aligned_cols=176 Identities=12% Similarity=0.058 Sum_probs=118.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHH
Q 042593 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140 (352)
Q Consensus 61 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~ 140 (352)
.+-.....+...|++++|+..|++..+.++..... |.. ..... ..........
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~-----~~~~~---------------~~~~~~~~~~ 58 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEM-------YYW-----TNVDK---------------NSEISSKLAT 58 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHH-------HHH-----HHSCT---------------TSHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHH-------HHH-----hhhcc---------------hhhhhHHHHH
Confidence 33445566778999999999999986533332111 111 00000 0011122344
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCC
Q 042593 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHG 219 (352)
Q Consensus 141 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~ 219 (352)
.+..++.+.|++++|...+++..+.... +...+..+..+|...|++++|.+.|++.....| +...|..+..+|...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPN--NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 5788899999999999999999988654 789999999999999999999999999876655 6788888888876665
Q ss_pred C--HHHHHHHHHHHHhcCCCCCcch---hh----------hHhHHHHHHHHHHhcCCCCChhhHHHHH
Q 042593 220 M--GKEAVENFERMQKVGLKPNRSW---RI----------GEEGLKFFDKMVEECEVLPDIKHYGCLI 272 (352)
Q Consensus 220 ~--~~~a~~~~~~m~~~~~~p~~~~---~~----------~~~a~~~~~~m~~~~~~~p~~~~~~~li 272 (352)
+ .+.+...++... .|+... +. +++|...|++.++ +.|+......+.
T Consensus 137 ~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~---l~P~~~~~~~l~ 197 (208)
T 3urz_A 137 EQEKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL---RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT---TSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCHHHHHHHH
Confidence 4 445566666543 233221 11 7889999998874 467765544443
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.84 E-value=1.8e-07 Score=75.98 Aligned_cols=169 Identities=14% Similarity=-0.005 Sum_probs=112.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCch-hhHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPS-EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDI-HVSNCLID 180 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~ 180 (352)
+..+...+.+.|++++|...|+++.....-.|. ...+..+..++.+.|++++|...++.+.+.....+.. ..+..+..
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~ 86 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGL 86 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHH
Confidence 555667788999999999999999543322222 3467888899999999999999999998876543111 23444444
Q ss_pred HHHh------------------hCChHHHHHHHHHhccCCCCH-hhH-----------------HHHHHHHHcCCCHHHH
Q 042593 181 TYAK------------------CGCIFSASKLFEDTSVDRKNL-VSW-----------------TTIISGFAMHGMGKEA 224 (352)
Q Consensus 181 ~~~~------------------~g~~~~a~~~~~~~~~~~~~~-~~~-----------------~~li~~~~~~~~~~~a 224 (352)
++.+ .|+.++|...|+++....|+. ..+ ..+...|.+.|++++|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A 166 (225)
T 2yhc_A 87 TNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAV 166 (225)
T ss_dssp HHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 5543 467888888888877665543 222 1234456667777777
Q ss_pred HHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 225 VENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 225 ~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
...|+++.+.- | +.+.....+..+..+|.+.|+.++|.+.++.+...
T Consensus 167 ~~~~~~~l~~~--p---------------------~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 167 VNRVEGMLRDY--P---------------------DTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHS--T---------------------TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHC--c---------------------CCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 77777766531 1 10111245677788888888888888888766544
No 102
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.83 E-value=2.2e-07 Score=83.80 Aligned_cols=211 Identities=10% Similarity=0.030 Sum_probs=142.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCC---ChhhHHHHHHHHHhcCCCCCchhhHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG---EVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~li 179 (352)
+..+...|...+.++++....... ...-...+...+..+...+...| +.++|...++...+.|.. +...+..+.
T Consensus 144 ~~~Lg~~y~~~~~~~~~~~~a~~~-~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~--~a~~~~~Lg 220 (452)
T 3e4b_A 144 GLAQVLLYRTQGTYDQHLDDVERI-CKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV--TAQRVDSVA 220 (452)
T ss_dssp HHHHHHHHHHHTCGGGGHHHHHHH-HHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS--CHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccCHHHHHHH-HHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH--HHHHHHHHH
Confidence 445555566656444333332222 11112233447888888888899 899999999999988855 566556777
Q ss_pred HHHHhh----CChHHHHHHHHHhccCCCCHhhHHHHHHH-H--HcCCCHHHHHHHHHHHHhcCCCCCcchhh--------
Q 042593 180 DTYAKC----GCIFSASKLFEDTSVDRKNLVSWTTIISG-F--AMHGMGKEAVENFERMQKVGLKPNRSWRI-------- 244 (352)
Q Consensus 180 ~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-------- 244 (352)
..|... ++.++|.+.|+... +-++..+..|-.. + ...++.++|...|++..+.|. |+.....
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~-~~A~~~Lg~~y~~G~ 297 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQ-PRAELLLGKLYYEGK 297 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHCS
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHcCC
Confidence 777655 79999999999986 4456667776666 4 568899999999999888762 1111111
Q ss_pred -----hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHH----cCChhHHHHHHhcCCCCCCCchhhHHHHHHHHh----c
Q 042593 245 -----GEEGLKFFDKMVEECEVLPDIKHYGCLIDILER----AGRLEQAEEVASGIPSQITNVVVWRTGFLRLLI----N 311 (352)
Q Consensus 245 -----~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~----~ 311 (352)
.++|..+|++.. .-+...+..|...|.. ..+.++|.+.|++.... .+......|...|.. .
T Consensus 298 g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~~G~g~~ 371 (452)
T 3e4b_A 298 WVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-GQNSADFAIAQLFSQGKGTK 371 (452)
T ss_dssp SSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-TCTTHHHHHHHHHHSCTTBC
T ss_pred CCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-ChHHHHHHHHHHHHhCCCCC
Confidence 667777777655 2356677777777776 34999999999987665 456677777777664 3
Q ss_pred ccccCcccccccch
Q 042593 312 SYFFSPITLNSQRL 325 (352)
Q Consensus 312 g~~~~a~~~~~~~~ 325 (352)
.+..+|...+....
T Consensus 372 ~d~~~A~~~~~~A~ 385 (452)
T 3e4b_A 372 PDPLNAYVFSQLAK 385 (452)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 46666776666654
No 103
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.82 E-value=5.1e-07 Score=76.39 Aligned_cols=213 Identities=10% Similarity=0.062 Sum_probs=143.8
Q ss_pred HHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHh
Q 042593 47 HAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM 126 (352)
Q Consensus 47 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m 126 (352)
+.....-...|+..+...+...+.-. + ..++..-...+...... +...+..+...|++++|..++++.
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~--~---~~~~~~~~~~~~~~~~~-------l~~~i~~~~~~~~y~~a~~~~~~~ 101 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIP--I---IHFYEVLIYSDIERKKQ-------FKDQVIMLCKQKRYKEIYNKVWNE 101 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCC--T---HHHHHTTTSSCHHHHHH-------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcC--H---HHHhCCCCCCcchhHHH-------HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34443333467777776666655422 1 22333322222222111 444567788999999999999998
Q ss_pred HhccCCCCChh----hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCc----hhhHHHHHHHHHhhCChHHHHHHHHHh
Q 042593 127 AACEYTEPSEI----TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD----IHVSNCLIDTYAKCGCIFSASKLFEDT 198 (352)
Q Consensus 127 ~~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~ 198 (352)
.......|+.. .+..+...+...+++++|...++...+......+ ..+++.+..+|...|++++|.+.|++.
T Consensus 102 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 181 (293)
T 3u3w_A 102 LKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQI 181 (293)
T ss_dssp HTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44333334422 3334666677788999999999999875433213 336899999999999999999999987
Q ss_pred cc-------CCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCC-hhhHH
Q 042593 199 SV-------DRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPD-IKHYG 269 (352)
Q Consensus 199 ~~-------~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~ 269 (352)
.. ..+ ...+|..+...|.+.|++++|...+++..+.. .+. +..+. ..+|.
T Consensus 182 l~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~--------------------~~~-~~~~~~~~~~~ 240 (293)
T 3u3w_A 182 LKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS--------------------CRI-NSMALIGQLYY 240 (293)
T ss_dssp HHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------------HHT-TBCTTHHHHHH
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------------------HHc-CcHHHHHHHHH
Confidence 63 122 23578899999999999999999999877631 111 22232 57888
Q ss_pred HHHHHHHHcCC-hhHHHHHHhcCC
Q 042593 270 CLIDILERAGR-LEQAEEVASGIP 292 (352)
Q Consensus 270 ~li~~~~~~g~-~~~A~~~~~~m~ 292 (352)
.+..+|.+.|+ .++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 688888777654
No 104
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.79 E-value=4.8e-07 Score=72.35 Aligned_cols=125 Identities=11% Similarity=-0.090 Sum_probs=109.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
+..+...+...|++++|...|++. +.|+...+..+..++.+.|++++|...++...+.... +...+..+..+|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~lg~~~ 81 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH--LAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--chHHHHHHHHHH
Confidence 566777888999999999999988 3678889999999999999999999999999887643 788999999999
Q ss_pred HhhCChHHHHHHHHHhccCCC-C----------------HhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 183 AKCGCIFSASKLFEDTSVDRK-N----------------LVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~~~-~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
...|++++|.+.|++.....| + ...+..+..+|...|++++|...|++..+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 999999999999999766433 2 277888999999999999999999998874
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.79 E-value=1.7e-07 Score=87.17 Aligned_cols=155 Identities=6% Similarity=-0.043 Sum_probs=113.3
Q ss_pred cCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCC
Q 042593 72 LGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGE 151 (352)
Q Consensus 72 ~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~ 151 (352)
.|++++|++.|++..+.++..... |..+...+...|++++|.+.|++..+.. +-+...+..+..++...|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~-------~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~ 72 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVA-------WLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQR 72 (568)
T ss_dssp -------------------CCHHH-------HHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCC
Confidence 478889999999887632222122 8888899999999999999999984422 2345688899999999999
Q ss_pred hhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcC---CCHHHHHHH
Q 042593 152 VRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMH---GMGKEAVEN 227 (352)
Q Consensus 152 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~---~~~~~a~~~ 227 (352)
+++|...+++..+.... +...+..+..+|.+.|++++|.+.|++..+..| +...+..+..++... |+.++|.+.
T Consensus 73 ~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~ 150 (568)
T 2vsy_A 73 HAEAAVLLQQASDAAPE--HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQ 150 (568)
T ss_dssp HHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 99999999999887644 788999999999999999999999999766544 678889999999999 999999999
Q ss_pred HHHHHhcCCC
Q 042593 228 FERMQKVGLK 237 (352)
Q Consensus 228 ~~~m~~~~~~ 237 (352)
+++..+.+..
T Consensus 151 ~~~al~~~p~ 160 (568)
T 2vsy_A 151 VRAAVAQGVG 160 (568)
T ss_dssp HHHHHHHTCC
T ss_pred HHHHHhcCCc
Confidence 9998886543
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.78 E-value=8.3e-08 Score=89.25 Aligned_cols=156 Identities=8% Similarity=-0.091 Sum_probs=113.6
Q ss_pred cCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCH
Q 042593 37 LSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRS 116 (352)
Q Consensus 37 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~ 116 (352)
.|++++|.+.++...+.. +.+...+..+...+...|++++|.+.|++..+.++..... |..+...+...|++
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~lg~~~~~~g~~ 73 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEA-------VARLGRVRWTQQRH 73 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHH-------HHHHHHHHHHTTCH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCCH
Confidence 478899999999887764 4467889999999999999999999999987633222222 88888999999999
Q ss_pred HHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhh---CChHHHHH
Q 042593 117 NEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC---GCIFSASK 193 (352)
Q Consensus 117 ~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~ 193 (352)
++|.+.|++..+.. +-+...+..+..++.+.|++++|...+++..+.... +...+..+..++... |+.++|.+
T Consensus 74 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~g~~~~A~~ 149 (568)
T 2vsy_A 74 AEAAVLLQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE--EPYITAQLLNWRRRLCDWRALDVLSA 149 (568)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhhccccHHHHHH
Confidence 99999999984432 234568899999999999999999999999988654 778889999999999 99999999
Q ss_pred HHHHhccCCCC
Q 042593 194 LFEDTSVDRKN 204 (352)
Q Consensus 194 ~~~~~~~~~~~ 204 (352)
.+++.....|+
T Consensus 150 ~~~~al~~~p~ 160 (568)
T 2vsy_A 150 QVRAAVAQGVG 160 (568)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHhcCCc
Confidence 99987665443
No 107
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.78 E-value=4.6e-07 Score=72.51 Aligned_cols=133 Identities=11% Similarity=-0.052 Sum_probs=105.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHH
Q 042593 61 VNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITIL 140 (352)
Q Consensus 61 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~ 140 (352)
.+..+...+...|++++|...|++...++... |..+...+...|++++|...|++..... +.+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~----------~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 75 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRI----------CFNIGCMYTILKNMTEAEKAFTRSINRD--KHLAVAYF 75 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHH----------HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHH
Confidence 34556777788899999999999887776555 8888888899999999999998884432 23456788
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhcCCC--------------CCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCH
Q 042593 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFN--------------AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205 (352)
Q Consensus 141 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 205 (352)
.+..++...|++++|...++...+.... |.....+..+..+|.+.|++++|.+.|+......|+.
T Consensus 76 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 8888899999999999999988875432 1133788899999999999999999999987776754
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.77 E-value=1.1e-07 Score=81.24 Aligned_cols=189 Identities=7% Similarity=-0.073 Sum_probs=134.4
Q ss_pred cCCcchHHHHHHHHHHhC------CCCch----hhHHHHHHHHHhcCChhHHHHHhccCCC-----CCchhHHHHHHHHH
Q 042593 37 LSYPNLGTQLHAVFSKVG------FQSHV----YVNTALGDMYVSLGFLKDSSKLFDELPE-----RNLVTWNVIITGLV 101 (352)
Q Consensus 37 ~g~~~~a~~~~~~m~~~~------~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~i~~~~ 101 (352)
.|++++|.++++...+.. ..++. ..|+.....|...|++++|...|.+..+ .+... ...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~---~a~--- 77 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFH---AAK--- 77 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH---HHH---
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH---HHH---
Confidence 456667777777665421 12332 3567777888899999999998887653 11110 011
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHhccC--CCCC--hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCC----CCchh
Q 042593 102 KWTGIIDGYSRMNRSNEALALFRRMAACEY--TEPS--EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN----AFDIH 173 (352)
Q Consensus 102 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~ 173 (352)
.|+.+...|...|++++|+..|++...... -.|. ..++..+...+.. |++++|...+++..+.... .....
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~ 156 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAE 156 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHH
Confidence 188889999999999999999998733211 1122 3467888888888 9999999999988754211 10246
Q ss_pred hHHHHHHHHHhhCChHHHHHHHHHhccC---CCC----HhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042593 174 VSNCLIDTYAKCGCIFSASKLFEDTSVD---RKN----LVSWTTIISGFAMHGMGKEAVENFERMQ 232 (352)
Q Consensus 174 ~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~ 232 (352)
+++.+..+|.+.|++++|.+.|++.... .++ ...+..+..++...|++++|...|++..
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7888999999999999999999987543 121 2366777778888899999999999987
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.77 E-value=3.7e-07 Score=73.36 Aligned_cols=178 Identities=12% Similarity=-0.019 Sum_probs=139.3
Q ss_pred chHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCC-CchhHHHHHHHHHhHHHHHHHHHhcC----C
Q 042593 41 NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPER-NLVTWNVIITGLVKWTGIIDGYSRMN----R 115 (352)
Q Consensus 41 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~i~~~~~~~~li~~~~~~~----~ 115 (352)
.+|.+.|+...+.| ++..+..|...|...+++++|.+.|++..+. +... +..|-..|.. + +
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a----------~~~lg~~y~~-~g~~~~ 68 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDA----------LALLAQLKIR-NPQQAD 68 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHH----------HHHHHHHTTS-STTSCC
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH----------HHHHHHHHHc-CCCCCC
Confidence 35778888888775 6777888899999999999999999987654 3444 6667777777 6 8
Q ss_pred HHHHHHHHHHhHhccCCCCChhhHHHHHHHHHh----CCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHh----hCC
Q 042593 116 SNEALALFRRMAACEYTEPSEITILAVLPAIWK----NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK----CGC 187 (352)
Q Consensus 116 ~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 187 (352)
.++|...|++. ...+ +...+..+...+.. .++.++|...+++..+.|.....+..+..|-..|.. .++
T Consensus 69 ~~~A~~~~~~A-~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d 144 (212)
T 3rjv_A 69 YPQARQLAEKA-VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED 144 (212)
T ss_dssp HHHHHHHHHHH-HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC
T ss_pred HHHHHHHHHHH-HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC
Confidence 99999999998 4433 55677788888877 889999999999998887531136778888888988 889
Q ss_pred hHHHHHHHHHhccCCCCHhhHHHHHHHHHcC-C-----CHHHHHHHHHHHHhcCC
Q 042593 188 IFSASKLFEDTSVDRKNLVSWTTIISGFAMH-G-----MGKEAVENFERMQKVGL 236 (352)
Q Consensus 188 ~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~-~-----~~~~a~~~~~~m~~~~~ 236 (352)
.++|.+.|++......+...+..|-..|... | +.++|...|++..+.|.
T Consensus 145 ~~~A~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 145 DVKASEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999765545666777777777643 3 89999999999888763
No 110
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.77 E-value=4e-08 Score=74.35 Aligned_cols=144 Identities=7% Similarity=-0.148 Sum_probs=102.1
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC-ChhhHHHHH
Q 042593 65 LGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP-SEITILAVL 143 (352)
Q Consensus 65 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~t~~~ll 143 (352)
|...+...|++++|+..++.....++..... +..+...|.+.|++++|.+.|++..+. .| +..+|..+.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~-------~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg 72 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIK-------GFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLG 72 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTT-------HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 3445556778888888888876533221111 667788888999999999999888442 34 456888888
Q ss_pred HHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHH-HHHhccCCC-CHhhHHHHHHHHHcCCC
Q 042593 144 PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKL-FEDTSVDRK-NLVSWTTIISGFAMHGM 220 (352)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~~-~~~~~~~li~~~~~~~~ 220 (352)
.++.+.|++++|...++...+.... +..++..+..+|.+.|+.++|.+. +++..+..| ++..|......+...|+
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 73 LLYELEENTDKAVECYRRSVELNPT--QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHcCchHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8889999999999999988887544 778888888889999988776655 466544444 56777776666666654
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.76 E-value=7.4e-07 Score=75.49 Aligned_cols=236 Identities=9% Similarity=-0.018 Sum_probs=174.6
Q ss_pred HhcCCc-chHHHHHHHHHHhCCCCchhhHHHHHHHHHhcC--ChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHH-
Q 042593 35 VTLSYP-NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG--FLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGY- 110 (352)
Q Consensus 35 ~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~- 110 (352)
.+.|.. ++|+++++.++... +-+...|+.--.++...| ++++++++++.+...++..|.+ |+.--..+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~a-------W~~R~~iL~ 114 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQI-------WNYRQLIIG 114 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHH-------HHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHH-------HHHHHHHHH
Confidence 345555 68999999999876 345566888888888888 9999999999987633333333 55444444
Q ss_pred ---Hhc---CCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChh--hHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 111 ---SRM---NRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVR--NCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 111 ---~~~---~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
... +++++++++++++.... +-+..+|+.-.-.+.+.|.++ ++...++.+.+..+. +.+.|+.-..++
T Consensus 115 ~~~~~l~~~~~~~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~--N~sAW~~R~~ll 190 (306)
T 3dra_A 115 QIMELNNNDFDPYREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK--NNSAWSHRFFLL 190 (306)
T ss_dssp HHHHHTTTCCCTHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred HHHHhccccCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Confidence 444 78999999999995432 245668888888888889888 999999999998766 888898887777
Q ss_pred HhhCC------hHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCH-HHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHH
Q 042593 183 AKCGC------IFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMG-KEAVENFERMQKVGLKPNRSWRIGEEGLKFFDK 254 (352)
Q Consensus 183 ~~~g~------~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~ 254 (352)
.+.|+ ++++++.++..... +-|...|+-+-..+.+.|+. +++..+..+..+.+ .
T Consensus 191 ~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~-~----------------- 252 (306)
T 3dra_A 191 FSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE-K----------------- 252 (306)
T ss_dssp HSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG-G-----------------
T ss_pred HhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc-C-----------------
Confidence 77776 88899998887655 45788898888888888874 33555666655432 0
Q ss_pred HHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC--CCCchhhHHHH
Q 042593 255 MVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ--ITNVVVWRTGF 305 (352)
Q Consensus 255 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~li 305 (352)
.-..+...+..+..+|.+.|+.++|.++++.+..+ +....-|+..+
T Consensus 253 -----~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 253 -----DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp -----TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred -----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 11346788899999999999999999999998753 44445555443
No 112
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.70 E-value=2.1e-08 Score=75.93 Aligned_cols=121 Identities=9% Similarity=-0.096 Sum_probs=76.2
Q ss_pred HHHHhcCCHHHHHHHHHHhHhccCCCCC-hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhC
Q 042593 108 DGYSRMNRSNEALALFRRMAACEYTEPS-EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG 186 (352)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 186 (352)
..+...|++++|+..+++. .. ..|+ ...+..+...|.+.|++++|...+++..+.... +..+|..+..+|.+.|
T Consensus 5 ~~~~~~~~~e~ai~~~~~a-~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGS-TP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER--DPKAHRFLGLLYELEE 79 (150)
T ss_dssp --CCCHHHHHHHHHHHHHH-SC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTT
T ss_pred HHHHHcChHHHHHHHHHHh-cc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcC
Confidence 3444556777777777666 21 1122 235556677777777777777777777766433 6677777777777777
Q ss_pred ChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHH-HHHHHh
Q 042593 187 CIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVEN-FERMQK 233 (352)
Q Consensus 187 ~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~-~~~m~~ 233 (352)
++++|...|++.....| +...|..+...|.+.|++++|... +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 77777777777655444 466677777777777776655444 355554
No 113
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.70 E-value=3.9e-06 Score=70.90 Aligned_cols=169 Identities=7% Similarity=-0.135 Sum_probs=124.9
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCC--CchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh---
Q 042593 62 NTALGDMYVSLGFLKDSSKLFDELPER--NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE--- 136 (352)
Q Consensus 62 ~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~--- 136 (352)
+...+..+...|++++|.+++++..+. ........+.. +..+...+...+++++|+..|++......-.++.
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 154 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQW---QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHH---HHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHH---HHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence 334477888999999999999987652 11111111111 5567778888899999999999995532223332
Q ss_pred -hhHHHHHHHHHhCCChhhHHHHHHHHHh----c-CCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC------CCC
Q 042593 137 -ITILAVLPAIWKNGEVRNCQLIHGYGEK----R-GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD------RKN 204 (352)
Q Consensus 137 -~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~ 204 (352)
.+++.+..++...|++++|...++++.+ . +..+....++..+..+|.+.|++++|.+.+++.... .+.
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~ 234 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 2689999999999999999999999874 1 222213458889999999999999999999876432 122
Q ss_pred -HhhHHHHHHHHHcCCC-HHHHHHHHHHHHh
Q 042593 205 -LVSWTTIISGFAMHGM-GKEAVENFERMQK 233 (352)
Q Consensus 205 -~~~~~~li~~~~~~~~-~~~a~~~~~~m~~ 233 (352)
..+|..+..+|.+.|+ +++|.+.+++...
T Consensus 235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 5778899999999995 6999999988765
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.69 E-value=4.3e-07 Score=77.45 Aligned_cols=195 Identities=7% Similarity=-0.072 Sum_probs=138.0
Q ss_pred cHHHHHHHHHhcCCcchHHHHHHHHHHhCC---CC--chhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHH
Q 042593 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGF---QS--HVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIIT 98 (352)
Q Consensus 26 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~ 98 (352)
.|+.....+...|++++|.+.|+...+... .+ -..+|+.+..+|.+.|++++|+..|++..+ +..........
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 678888889999999999999998875421 11 145788999999999999999998887643 11000011111
Q ss_pred HHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC----hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCC----CCC
Q 042593 99 GLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS----EITILAVLPAIWKNGEVRNCQLIHGYGEKRGF----NAF 170 (352)
Q Consensus 99 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~ 170 (352)
.++.+...|.. |++++|+..|++......-..+ ..++..+...+.+.|++++|...+++..+... .+.
T Consensus 118 ---~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 193 (307)
T 2ifu_A 118 ---ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT 193 (307)
T ss_dssp ---HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ---HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH
Confidence 18888888988 9999999999987432211111 35788899999999999999999999876421 110
Q ss_pred chhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCH------hhHHHHHHHHHcCCCHHHHHH
Q 042593 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL------VSWTTIISGFAMHGMGKEAVE 226 (352)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~ 226 (352)
....+..+..++...|++++|...|++.. ..|+. .....++.++ ..|+.+.+.+
T Consensus 194 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 194 CYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 12366777788888899999999999987 64421 2344555555 5677666655
No 115
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.66 E-value=8e-07 Score=75.19 Aligned_cols=172 Identities=5% Similarity=-0.164 Sum_probs=124.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCC--CC
Q 042593 59 VYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYT--EP 134 (352)
Q Consensus 59 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~p 134 (352)
...+...+..+...|++++|.+.+++..+ +........+.. +..+...+...|++++|+..+++....... .+
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQW---QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHH---HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 44566678889999999999999886543 221111111111 445667788889999999999988432211 12
Q ss_pred C--hhhHHHHHHHHHhCCChhhHHHHHHHHHhc---CCCCC--chhhHHHHHHHHHhhCChHHHHHHHHHhccCCC----
Q 042593 135 S--EITILAVLPAIWKNGEVRNCQLIHGYGEKR---GFNAF--DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK---- 203 (352)
Q Consensus 135 ~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---- 203 (352)
. ..+++.+...+...|++++|...+++..+. ....+ ...++..+..+|.+.|++++|.+.+++.....+
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~ 231 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS 231 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc
Confidence 2 347889999999999999999999988732 21110 125888999999999999999999998643311
Q ss_pred ---CHhhHHHHHHHHHcCCCHHHH-HHHHHHHHh
Q 042593 204 ---NLVSWTTIISGFAMHGMGKEA-VENFERMQK 233 (352)
Q Consensus 204 ---~~~~~~~li~~~~~~~~~~~a-~~~~~~m~~ 233 (352)
-..+|..+..+|.+.|+.++| ...+++...
T Consensus 232 ~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 257788999999999999999 777887654
No 116
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.62 E-value=2.2e-06 Score=80.60 Aligned_cols=204 Identities=8% Similarity=-0.082 Sum_probs=153.5
Q ss_pred CcccHHHHHHHHHhcCCcchHH-HHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC-------------C
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGT-QLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE-------------R 88 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------------~ 88 (352)
+...|-..+..+.+.|+.+.|. ++++.....- +.+...|-..+...-+.|++++|.++|+.+.+ |
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 5566777777777889999996 9999998643 55666777888889999999999999998764 2
Q ss_pred Cch------h-HHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhC-CChhhHHHHHH
Q 042593 89 NLV------T-WNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN-GEVRNCQLIHG 160 (352)
Q Consensus 89 ~~~------~-~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~-~~~~~a~~~~~ 160 (352)
+.. . -... .|-..++...+.|+.+.|..+|.+..+..+ .+....|...+..-.+. ++.+.|..+|+
T Consensus 421 ~~~~~~~~~~~~~~~-----vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife 494 (679)
T 4e6h_A 421 TNESAINQLKSKLTY-----VYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLE 494 (679)
T ss_dssp TCHHHHHHHHHHHHH-----HHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred cchhhhhhhccchHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 100 0 0111 177788888888999999999999954412 11223333332222333 55899999999
Q ss_pred HHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC----CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 042593 161 YGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK----NLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235 (352)
Q Consensus 161 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 235 (352)
...+.- |.+...+...++.....|+.+.|..+|+......| ....|...+..-.+.|+.+.+..+.+++.+.-
T Consensus 495 ~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 495 LGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 998872 32777888999999999999999999999877655 34778888888899999999999999999863
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.58 E-value=2.6e-06 Score=71.96 Aligned_cols=168 Identities=13% Similarity=0.078 Sum_probs=123.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh----hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCc----hhh
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE----ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD----IHV 174 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 174 (352)
+...+..+...|++++|.+.+++........++. ..+..+...+...|++++|...++...+......+ ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 5567778899999999999998874433221211 22444566677889999999999988754322111 458
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHhcc---CCCC-----HhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhH
Q 042593 175 SNCLIDTYAKCGCIFSASKLFEDTSV---DRKN-----LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGE 246 (352)
Q Consensus 175 ~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~ 246 (352)
++.+...|...|++++|.+.|++... ..|+ ..+++.+...|...|++++|...+++..+..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~----------- 226 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS----------- 226 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH-----------
Confidence 88999999999999999999998652 2222 2688899999999999999999999977631
Q ss_pred hHHHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCChhHH-HHHHhcC
Q 042593 247 EGLKFFDKMVEECEVLP-DIKHYGCLIDILERAGRLEQA-EEVASGI 291 (352)
Q Consensus 247 ~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A-~~~~~~m 291 (352)
... +... -..+|..+..+|.+.|+.++| ...+++.
T Consensus 227 ---------~~~-~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 227 ---------CRI-NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp ---------HHT-TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred ---------Hhc-CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 011 2222 256788899999999999999 6666654
No 118
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.55 E-value=1e-06 Score=74.15 Aligned_cols=94 Identities=10% Similarity=-0.132 Sum_probs=46.6
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHH
Q 042593 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFA 216 (352)
Q Consensus 138 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~ 216 (352)
.+..+...+.+.|++++|...++...+.... +...|..+..+|.+.|++++|.+.+++.....| +...+..+..+|.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3444444455555555555555555444322 444455555555555555555555555443322 3444555555555
Q ss_pred cCCCHHHHHHHHHHHHh
Q 042593 217 MHGMGKEAVENFERMQK 233 (352)
Q Consensus 217 ~~~~~~~a~~~~~~m~~ 233 (352)
..|++++|...|++..+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555443
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.54 E-value=5.1e-07 Score=75.95 Aligned_cols=195 Identities=8% Similarity=-0.096 Sum_probs=131.3
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHh
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVK 102 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~ 102 (352)
+...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|.+.|++++|+..+++..+-++....+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~------- 74 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA------- 74 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHH-------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHH-------
Confidence 56778888999999999999999999999875 4578889999999999999999999999987633322222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
|..+..++...|++++|...|++......-.+. .+...+....+.. .... +.......... +......+.. +
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~--~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~-~~~i~~~l~~-l 146 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL--NFGDDIPSALRIA---KKKR-WNSIEERRIHQ-ESELHSYLTR-L 146 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--CCCSHHHHHHHHH---HHHH-HHHHHHTCCCC-CCHHHHHHHH-H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchh--hHHHHHHHHHHHH---HHHH-HHHHHHHHHhh-hHHHHHHHHH-H
Confidence 888899999999999999999998443211111 1111222211111 1111 11222222332 4444444433 2
Q ss_pred HhhCChHHHHHHHHHhccCCCCH-hhHHHHHHHHHcC-CCHHHHHHHHHHHHhc
Q 042593 183 AKCGCIFSASKLFEDTSVDRKNL-VSWTTIISGFAMH-GMGKEAVENFERMQKV 234 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~~~~~-~~~~~li~~~~~~-~~~~~a~~~~~~m~~~ 234 (352)
..|+.++|.+.++......|+. .....+-..+.+. +.+++|.++|.+..+.
T Consensus 147 -~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 147 -IAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp -HHHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred -HHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3689999999998887666654 3334444444444 6688999999987664
No 120
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.53 E-value=4.1e-06 Score=66.13 Aligned_cols=159 Identities=9% Similarity=-0.055 Sum_probs=108.4
Q ss_pred HHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC----CCchhHHHHHHHHHhHHHHHHH
Q 042593 34 CVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE----RNLVTWNVIITGLVKWTGIIDG 109 (352)
Q Consensus 34 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~~~~~~i~~~~~~~~li~~ 109 (352)
+...|++++|.++++.+.. ........+..+...+...|++++|...+++..+ .+........ ++.+...
T Consensus 2 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-----~~~l~~~ 75 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRA-----LHQVGMV 75 (203)
T ss_dssp -----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHH-----HHHHHHH
T ss_pred ccccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHH-----HHHHHHH
Confidence 3467899999996655543 2124567899999999999999999999988754 1111111111 8888899
Q ss_pred HHhcCCHHHHHHHHHHhHhccCCCC-C----hhhHHHHHHHHHhCCChhhHHHHHHHHHhc----CCCCCchhhHHHHHH
Q 042593 110 YSRMNRSNEALALFRRMAACEYTEP-S----EITILAVLPAIWKNGEVRNCQLIHGYGEKR----GFNAFDIHVSNCLID 180 (352)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~~~~~p-~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~ 180 (352)
+...|++++|...+++......-.+ + ...+..+...+...|++++|...+++..+. +.......++..+..
T Consensus 76 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 155 (203)
T 3gw4_A 76 ERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGD 155 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999999999999998744311122 2 235777788888889999998888877643 211101334567778
Q ss_pred HHHhhCChHHHHHHHHHh
Q 042593 181 TYAKCGCIFSASKLFEDT 198 (352)
Q Consensus 181 ~~~~~g~~~~a~~~~~~~ 198 (352)
++...|++++|.+.+++.
T Consensus 156 ~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 156 LAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHH
Confidence 888888888888888776
No 121
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.52 E-value=1.5e-05 Score=67.50 Aligned_cols=198 Identities=5% Similarity=-0.079 Sum_probs=155.2
Q ss_pred cccHHHHHHHHHhcC--CcchHHHHHHHHHHhCCCCchhhHHHHHHHH----Hhc---CChhHHHHHhccCCCCCchhHH
Q 042593 24 SFTYSFLIRTCVTLS--YPNLGTQLHAVFSKVGFQSHVYVNTALGDMY----VSL---GFLKDSSKLFDELPERNLVTWN 94 (352)
Q Consensus 24 ~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----~~~---g~~~~a~~~~~~m~~~~~~~~~ 94 (352)
..+|+.--.++...| ++++++++++.+.... +-+..+|+.--..+ .+. +++++++++++++.+.++..|.
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~ 145 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHH 145 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHH
Confidence 445666667777788 9999999999999876 45666777666666 555 7899999999999875555555
Q ss_pred HHHHHHHhHHHHHHHHHhcCCHH--HHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCC------hhhHHHHHHHHHhcC
Q 042593 95 VIITGLVKWTGIIDGYSRMNRSN--EALALFRRMAACEYTEPSEITILAVLPAIWKNGE------VRNCQLIHGYGEKRG 166 (352)
Q Consensus 95 ~~i~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~------~~~a~~~~~~~~~~~ 166 (352)
+ |+.-.-.+.+.|.++ ++++.++++.. .. .-|...|+.-...+.+.+. ++++.+.++.+....
T Consensus 146 a-------W~~R~~vl~~l~~~~~~~EL~~~~~~i~-~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~ 216 (306)
T 3dra_A 146 V-------WSYRKWLVDTFDLHNDAKELSFVDKVID-TD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC 216 (306)
T ss_dssp H-------HHHHHHHHHHTTCTTCHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC
T ss_pred H-------HHHHHHHHHHhcccChHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC
Confidence 5 777777778888888 99999999944 32 2456678777777777776 888999999988886
Q ss_pred CCCCchhhHHHHHHHHHhhCChHH-HHHHHHHhccC----CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 167 FNAFDIHVSNCLIDTYAKCGCIFS-ASKLFEDTSVD----RKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 167 ~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
+. +...|+-+-..+.+.|+... +.++.+++... ..+...+..+...|.+.|+.++|.++++.+.+
T Consensus 217 p~--n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 217 PQ--NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp SS--CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CC--CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 65 89999999999999888544 55677765543 34778899999999999999999999999876
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.52 E-value=2.9e-06 Score=64.59 Aligned_cols=127 Identities=8% Similarity=-0.072 Sum_probs=104.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
|..+...+...|++++|...|++..... +.+..++..+..++...|++++|...++...+.... +...+..+..++
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~a~~~ 91 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHH
Confidence 7888889999999999999999984432 235678889999999999999999999999887543 788899999999
Q ss_pred HhhCChHHHHHHHHHhccCCC-CHhhHHH--HHHHHHcCCCHHHHHHHHHHHHh
Q 042593 183 AKCGCIFSASKLFEDTSVDRK-NLVSWTT--IISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~--li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
...|++++|.+.|++.....| +...+.. +...+...|++++|...+.....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999766544 4555533 44447788999999999987654
No 123
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.51 E-value=1.5e-06 Score=68.63 Aligned_cols=154 Identities=11% Similarity=-0.035 Sum_probs=112.0
Q ss_pred HhcCChhHHHH---HhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhc---cCCCC-ChhhHHHH
Q 042593 70 VSLGFLKDSSK---LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAAC---EYTEP-SEITILAV 142 (352)
Q Consensus 70 ~~~g~~~~a~~---~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~p-~~~t~~~l 142 (352)
...|++++|.+ ++..-....... ++.+...+...|++++|...+++.... .+..| ...++..+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 72 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGA----------RFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQV 72 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHH----------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHH----------HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 46799999999 554422112222 888889999999999999999987432 11122 23468888
Q ss_pred HHHHHhCCChhhHHHHHHHHHhc----CCCC-CchhhHHHHHHHHHhhCChHHHHHHHHHhccC---CCC----HhhHHH
Q 042593 143 LPAIWKNGEVRNCQLIHGYGEKR----GFNA-FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD---RKN----LVSWTT 210 (352)
Q Consensus 143 l~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~~~ 210 (352)
...+...|++++|...+++..+. +..+ .....+..+..++...|++++|.+.+++.... ..+ ..++..
T Consensus 73 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 152 (203)
T 3gw4_A 73 GMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRG 152 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 88999999999999999987764 2111 13556888899999999999999999886532 222 244678
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHh
Q 042593 211 IISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 211 li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
+...+...|++++|...+++..+
T Consensus 153 la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 153 LGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHH
Confidence 88899999999999999998765
No 124
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.51 E-value=3.9e-06 Score=60.21 Aligned_cols=96 Identities=16% Similarity=0.141 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHH
Q 042593 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGF 215 (352)
Q Consensus 137 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~ 215 (352)
..+..+...+...|++++|...++++.+.... +..++..+..++.+.|++++|...|+++... +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45666666666777777777777766665432 5566666777777777777777777765544 33556666777777
Q ss_pred HcCCCHHHHHHHHHHHHhc
Q 042593 216 AMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~~ 234 (352)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 7777777777777776653
No 125
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.50 E-value=4.3e-07 Score=78.54 Aligned_cols=129 Identities=10% Similarity=-0.095 Sum_probs=108.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-------------hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCC
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPS-------------EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNA 169 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 169 (352)
|..+...+.+.|++++|...|++......-.++ ...|..+..++.+.|++++|...++...+....
T Consensus 150 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~- 228 (336)
T 1p5q_A 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN- 228 (336)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 888899999999999999999998443221110 378999999999999999999999999988644
Q ss_pred CchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHH-HHHHHHHHh
Q 042593 170 FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEA-VENFERMQK 233 (352)
Q Consensus 170 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a-~~~~~~m~~ 233 (352)
+...+..+..+|...|++++|...|++.....| +...+..+..++.+.|+.++| ...++.|..
T Consensus 229 -~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 229 -NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999876655 678888999999999999888 556777654
No 126
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.50 E-value=7.1e-06 Score=65.74 Aligned_cols=157 Identities=8% Similarity=-0.090 Sum_probs=127.4
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcC----ChhHHHHHhccCCCC-CchhHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG----FLKDSSKLFDELPER-NLVTWNVII 97 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~-~~~~~~~~i 97 (352)
++..+..+...+...+++++|.+.|+...+.| ++..+..|...|.. + ++++|.+.|++..++ +...
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a----- 87 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSG----- 87 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHH-----
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHH-----
Confidence 78889999999999999999999999998876 56777788888887 6 899999999998654 3444
Q ss_pred HHHHhHHHHHHHHHh----cCCHHHHHHHHHHhHhccCCCCC---hhhHHHHHHHHHh----CCChhhHHHHHHHHHhcC
Q 042593 98 TGLVKWTGIIDGYSR----MNRSNEALALFRRMAACEYTEPS---EITILAVLPAIWK----NGEVRNCQLIHGYGEKRG 166 (352)
Q Consensus 98 ~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~p~---~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 166 (352)
+..|...|.. .+++++|...|++. ...+ |+ ...+..+...|.. .++.++|...++...+.+
T Consensus 88 -----~~~Lg~~y~~g~g~~~d~~~A~~~~~~A-~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 159 (212)
T 3rjv_A 88 -----EIVLARVLVNRQAGATDVAHAITLLQDA-ARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS 159 (212)
T ss_dssp -----HHHHHHHHTCGGGSSCCHHHHHHHHHHH-TSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS
T ss_pred -----HHHHHHHHHcCCCCccCHHHHHHHHHHH-HHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC
Confidence 6677777776 88999999999999 5444 32 5688888888888 889999999999998872
Q ss_pred CCCCchhhHHHHHHHHHhh-C-----ChHHHHHHHHHhc
Q 042593 167 FNAFDIHVSNCLIDTYAKC-G-----CIFSASKLFEDTS 199 (352)
Q Consensus 167 ~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~~~ 199 (352)
- +...+..|..+|... | +.++|.+.|+...
T Consensus 160 ~---~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 160 R---TGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp C---TTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred C---CHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 2 445667777777654 3 8999999998763
No 127
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.50 E-value=1.7e-06 Score=65.25 Aligned_cols=99 Identities=12% Similarity=0.006 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
+..+...+.+.|++++|...|++..... +-+...|..+..++...|++++|...+++..+.... ++..|..+..+|
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~--~~~~~~~lg~~~ 114 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN--DYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC--CcHHHHHHHHHH
Confidence 5666666777777777777777763322 123456666777777777777777777777666433 566666777777
Q ss_pred HhhCChHHHHHHHHHhccCCCCH
Q 042593 183 AKCGCIFSASKLFEDTSVDRKNL 205 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~~~~~ 205 (352)
.+.|++++|.+.|+......|+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCH
Confidence 77777777777777665445554
No 128
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.50 E-value=6.2e-07 Score=65.51 Aligned_cols=94 Identities=10% Similarity=-0.070 Sum_probs=54.8
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHH
Q 042593 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFA 216 (352)
Q Consensus 138 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~ 216 (352)
.+......+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|++.|++.... +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE--NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4555556666666666666666666555432 5555666666666666666666666654433 234555666666666
Q ss_pred cCCCHHHHHHHHHHHHh
Q 042593 217 MHGMGKEAVENFERMQK 233 (352)
Q Consensus 217 ~~~~~~~a~~~~~~m~~ 233 (352)
..|++++|.+.|++..+
T Consensus 93 ~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 66666666666666554
No 129
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.49 E-value=1.2e-05 Score=69.04 Aligned_cols=231 Identities=12% Similarity=0.035 Sum_probs=161.6
Q ss_pred HHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcC-ChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHH
Q 042593 32 RTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG-FLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGY 110 (352)
Q Consensus 32 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~ 110 (352)
....+.+..++|+++++.+.... +-+..+|+.--.++...| ++++++++++.+...++..|.+ |+.-...+
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~a-------W~hR~wlL 133 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQV-------WHHRLLLL 133 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHH-------HHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHH-------HHHHHHHH
Confidence 33344556678999999999876 445667888888888888 5999999999998766666555 77777777
Q ss_pred Hhc-C-CHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChh--------hHHHHHHHHHhcCCCCCchhhHHHHHH
Q 042593 111 SRM-N-RSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVR--------NCQLIHGYGEKRGFNAFDIHVSNCLID 180 (352)
Q Consensus 111 ~~~-~-~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~li~ 180 (352)
.+. + ++++++++++++.. .. +-|...|+.-.-.+.+.|.++ ++.+.++.+.+..+. +...|+....
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~-~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~--N~SAW~~R~~ 209 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLL-PD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR--NNSAWGWRWY 209 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTS-SC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC--CHHHHHHHHH
Confidence 666 6 88999999999943 22 234556766665666666666 889999999988765 8889998888
Q ss_pred HHHhhCC-------hHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCH--------------------HHHHHHHHHHH
Q 042593 181 TYAKCGC-------IFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMG--------------------KEAVENFERMQ 232 (352)
Q Consensus 181 ~~~~~g~-------~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~--------------------~~a~~~~~~m~ 232 (352)
++.+.++ ++++++.+++.... +-|...|+-+-..+.+.|+. .+..+...++.
T Consensus 210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (349)
T 3q7a_A 210 LRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMP 289 (349)
T ss_dssp HHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCC
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHH
Confidence 8888876 67888888776555 44777787766666665543 11111111111
Q ss_pred hcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 233 KVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 233 ~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
..+. ++ . .-.++......|++.|...|+.++|.++++.+..+
T Consensus 290 ~~~~-~~------------------~-~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 290 SDPL-PE------------------D-TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp C-CC-CS------------------S-CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hccc-cc------------------c-cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1100 00 0 11357788899999999999999999999998644
No 130
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.48 E-value=4.5e-06 Score=78.52 Aligned_cols=230 Identities=7% Similarity=-0.107 Sum_probs=155.1
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHH-HHhccCCC--CCchhHHHHHHHHHhHHHHHHHHHhcCCHHHH
Q 042593 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSS-KLFDELPE--RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEA 119 (352)
Q Consensus 43 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~--~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a 119 (352)
+..+|+.+...- +-+...|-..+..+...|+.++|. ++|+.... |.... + |-..+...-+.|++++|
T Consensus 328 v~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~----L-----wl~~a~~ee~~~~~e~a 397 (679)
T 4e6h_A 328 MTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAV----L-----AFSLSEQYELNTKIPEI 397 (679)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHH----H-----HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHH----H-----HHHHHHHHHHhCCHHHH
Confidence 456788887753 557788888888888899999996 99988764 43221 1 66777778889999999
Q ss_pred HHHHHHhHhcc---------CCCCC------------hhhHHHHHHHHHhCCChhhHHHHHHHHHhc-CCCCCchhhHHH
Q 042593 120 LALFRRMAACE---------YTEPS------------EITILAVLPAIWKNGEVRNCQLIHGYGEKR-GFNAFDIHVSNC 177 (352)
Q Consensus 120 ~~~~~~m~~~~---------~~~p~------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~ 177 (352)
.++|+++.... .. |+ ...|...++...+.|..+.|..++....+. +.. ...+|..
T Consensus 398 R~iyek~l~~l~~~~~~~~~~~-p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~--~~~lyi~ 474 (679)
T 4e6h_A 398 ETTILSCIDRIHLDLAALMEDD-PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV--TPDIYLE 474 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS--CTHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcc-CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--ChHHHHH
Confidence 99999984321 11 42 235777788778889999999999998876 322 3344433
Q ss_pred HHHHHHhh-CChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHH
Q 042593 178 LIDTYAKC-GCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKM 255 (352)
Q Consensus 178 li~~~~~~-g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m 255 (352)
....--+. ++.+.|.++|+...+..| +...|...+......|+.+.|..+|++.......+.
T Consensus 475 ~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~---------------- 538 (679)
T 4e6h_A 475 NAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH---------------- 538 (679)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT----------------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH----------------
Confidence 33333344 458999999998766644 566677888878888999999999999887432111
Q ss_pred HHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHH
Q 042593 256 VEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRL 308 (352)
Q Consensus 256 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~ 308 (352)
-....|...+..-.+.|+.+.+.++.+++....|+......++.-|
T Consensus 539 -------~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 539 -------LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKY 584 (679)
T ss_dssp -------HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHHHHHHHT
T ss_pred -------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHh
Confidence 0234555556666666666666666666654434444444444433
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.48 E-value=1.3e-06 Score=63.43 Aligned_cols=95 Identities=11% Similarity=-0.042 Sum_probs=54.6
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHH
Q 042593 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGF 215 (352)
Q Consensus 137 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~ 215 (352)
..+..+...+...|++++|...++...+.... +...+..+..++...|++++|.+.++......| +...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPA--NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 34555555566666666666666666554322 455555666666666666666666665543322 355555555666
Q ss_pred HcCCCHHHHHHHHHHHHh
Q 042593 216 AMHGMGKEAVENFERMQK 233 (352)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~ 233 (352)
...|++++|...+++..+
T Consensus 91 ~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 666666666666665554
No 132
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.48 E-value=1.6e-06 Score=63.32 Aligned_cols=95 Identities=12% Similarity=0.025 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCC-CCHhhHHHHHHHH
Q 042593 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR-KNLVSWTTIISGF 215 (352)
Q Consensus 137 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~li~~~ 215 (352)
..+..+...+.+.|++++|...+++..+.... +...+..+..++...|++++|.+.+++..... .+...+..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK--DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT--CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 34555555556666666666666655554322 45555555555666666666666665544332 2345555555556
Q ss_pred HcCCCHHHHHHHHHHHHh
Q 042593 216 AMHGMGKEAVENFERMQK 233 (352)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~ 233 (352)
...|++++|...+++..+
T Consensus 95 ~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 666666666666655544
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.46 E-value=3.6e-06 Score=61.30 Aligned_cols=113 Identities=4% Similarity=-0.220 Sum_probs=92.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
|..+...+...|++++|...|++... .. +.+...+..+..++...|++++|...+++..+.... +...+..+..++
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~ 94 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIK-RN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT--FIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHT-TC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-cC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--chHHHHHHHHHH
Confidence 78888999999999999999999843 22 235678889999999999999999999999887543 778899999999
Q ss_pred HhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCC
Q 042593 183 AKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHG 219 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~ 219 (352)
.+.|++++|.+.|++.....| +...+..+..++...|
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 999999999999998765554 4556666666665544
No 134
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.46 E-value=4.6e-06 Score=59.83 Aligned_cols=111 Identities=13% Similarity=0.101 Sum_probs=90.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
|..+...+...|++++|.+.|+++.... +.+..++..+...+.+.|++++|...++.+.+.... +..++..+..++
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~ 87 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHH
Confidence 7788889999999999999999994432 235668889999999999999999999999887543 778889999999
Q ss_pred HhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHc
Q 042593 183 AKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAM 217 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~ 217 (352)
...|++++|.+.|+++....| +...+..+...+..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 999999999999999865544 45556555555443
No 135
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.46 E-value=9.5e-07 Score=67.33 Aligned_cols=123 Identities=13% Similarity=-0.045 Sum_probs=60.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHhccCCC--C-CchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh
Q 042593 61 VNTALGDMYVSLGFLKDSSKLFDELPE--R-NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137 (352)
Q Consensus 61 ~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 137 (352)
.+..+...+...|++++|...|++..+ | +... |..+...+...|++++|...+++..... +.+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~----------~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~ 82 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY----------YGNRSLAYLRTECYGYALGDATRAIELD--KKYIK 82 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH----------HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHH
Confidence 344444445555555555555554432 1 1222 4455555555556666666555552221 12334
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhH--HHHHHHHHhhCChHHHHHHHHH
Q 042593 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS--NCLIDTYAKCGCIFSASKLFED 197 (352)
Q Consensus 138 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~ 197 (352)
.+..+..++...|++++|...+++..+.... +...+ ..+...+.+.|++++|.+.+..
T Consensus 83 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 83 GYYRRAASNMALGKFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 5555555566666666666666665554332 33333 2233335555666666665554
No 136
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.45 E-value=6.3e-07 Score=71.02 Aligned_cols=162 Identities=13% Similarity=-0.019 Sum_probs=104.2
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC---------
Q 042593 65 LGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS--------- 135 (352)
Q Consensus 65 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~--------- 135 (352)
.+......|+++++.+.++.-.+........ +..+...+...|++++|...|++......-.|+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 82 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFD-------IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK 82 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 4445556677777777776543211111111 777788889999999999999998543322221
Q ss_pred -----hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHH
Q 042593 136 -----EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWT 209 (352)
Q Consensus 136 -----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~ 209 (352)
...+..+..++.+.|++++|...++...+.... +...+..+..+|...|++++|.+.|++.....| +...+.
T Consensus 83 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 160 (198)
T 2fbn_A 83 KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN--NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRN 160 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 267888888999999999999999999887543 788888999999999999999999998765544 667777
Q ss_pred HHHHHHHcCCCHHHHH-HHHHHHHhcC
Q 042593 210 TIISGFAMHGMGKEAV-ENFERMQKVG 235 (352)
Q Consensus 210 ~li~~~~~~~~~~~a~-~~~~~m~~~~ 235 (352)
.+..++...++.+++. ..+..|...+
T Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 161 SYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 8877777777777666 5566665543
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.44 E-value=1.3e-06 Score=72.59 Aligned_cols=190 Identities=7% Similarity=-0.111 Sum_probs=137.3
Q ss_pred hcCCcchHHHHHHHHHHhCCCCchhhHHHH-------HHHHHhcCChhHHHHHhccCCC--C-------C-chhH-----
Q 042593 36 TLSYPNLGTQLHAVFSKVGFQSHVYVNTAL-------GDMYVSLGFLKDSSKLFDELPE--R-------N-LVTW----- 93 (352)
Q Consensus 36 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~--~-------~-~~~~----- 93 (352)
..++...|.+.|....+.. +-....|..+ ...+.+.++..++...+..-.+ | + ...|
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 6899999999999999876 4456778777 4555555555555555554433 1 1 1111
Q ss_pred -----HHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCC
Q 042593 94 -----NVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN 168 (352)
Q Consensus 94 -----~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 168 (352)
..+ +-.....+...|++++|.++|+.+ ...+ |+......+...+.+.+++++|+..++...+...+
T Consensus 97 ~v~~r~dl------~LayA~~L~~~g~y~eA~~~l~~~-~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~ 167 (282)
T 4f3v_A 97 PVTSPLAI------TMGFAACEAAQGNYADAMEALEAA-PVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDK 167 (282)
T ss_dssp ECSSHHHH------HHHHHHHHHHHTCHHHHHHHHTSS-CCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH
T ss_pred ccCCHhHH------HHHHHHHHHHCCCHHHHHHHHHHH-HhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCc
Confidence 111 445667788999999999999999 4433 55446666666888999999999999866554311
Q ss_pred CCchhhHHHHHHHHHhhCChHHHHHHHHHhccCC--CC--HhhHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 042593 169 AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR--KN--LVSWTTIISGFAMHGMGKEAVENFERMQKVG 235 (352)
Q Consensus 169 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 235 (352)
......+..+-.++...|++++|++.|++..... |. .........++.+.|+.++|...|+++....
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 0013467788999999999999999999986432 53 3456677788999999999999999999854
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.44 E-value=4.9e-06 Score=60.25 Aligned_cols=115 Identities=5% Similarity=-0.134 Sum_probs=96.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++...+.... +...+..+..++
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~ 90 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA--YSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc--CHHHHHHHHHHH
Confidence 7778889999999999999999984432 235678889999999999999999999999887543 678899999999
Q ss_pred HhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCH
Q 042593 183 AKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMG 221 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~ 221 (352)
.+.|++++|.+.|++.....| +...+..+..++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999998766544 677788888887777654
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.42 E-value=2.3e-06 Score=66.27 Aligned_cols=118 Identities=8% Similarity=0.029 Sum_probs=51.1
Q ss_pred hcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHH-HHhhCCh--
Q 042593 112 RMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT-YAKCGCI-- 188 (352)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~-- 188 (352)
..|++++|...+++..... +.+...+..+...+...|++++|...++...+.... +...+..+..+ +...|++
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE--NAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTCCC
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhcCCcch
Confidence 3444555555554442211 122334444445555555555555555554444322 33444444444 4444544
Q ss_pred HHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 189 FSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 189 ~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
++|.+.|++.....| +...+..+...|...|++++|...+++..+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 555555544433322 334444444445555555555555554443
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.41 E-value=2.1e-06 Score=64.83 Aligned_cols=102 Identities=12% Similarity=0.030 Sum_probs=89.4
Q ss_pred CCCCh-hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHH
Q 042593 132 TEPSE-ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWT 209 (352)
Q Consensus 132 ~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~ 209 (352)
+.|+. ..+..+...+.+.|++++|...|+...+..+. +...|..+..+|...|++++|.+.|++.....| ++..|.
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~--~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY--NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 34543 47888888999999999999999999988654 889999999999999999999999999876655 678899
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcC
Q 042593 210 TIISGFAMHGMGKEAVENFERMQKVG 235 (352)
Q Consensus 210 ~li~~~~~~~~~~~a~~~~~~m~~~~ 235 (352)
.+..+|...|++++|...|++..+..
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999998853
No 141
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.40 E-value=5.5e-06 Score=58.21 Aligned_cols=99 Identities=8% Similarity=-0.107 Sum_probs=83.3
Q ss_pred ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC---CHhhHHHH
Q 042593 135 SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK---NLVSWTTI 211 (352)
Q Consensus 135 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~l 211 (352)
+...+..+...+...|++++|...++...+.... +...+..+..++...|++++|.+.|++.....| +...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE--ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 3456778888888999999999999998887543 677888899999999999999999998776644 57888889
Q ss_pred HHHHHcC-CCHHHHHHHHHHHHhcC
Q 042593 212 ISGFAMH-GMGKEAVENFERMQKVG 235 (352)
Q Consensus 212 i~~~~~~-~~~~~a~~~~~~m~~~~ 235 (352)
..++... |++++|.+.+++..+..
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 9999999 99999999999988764
No 142
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.40 E-value=6.7e-06 Score=59.89 Aligned_cols=106 Identities=9% Similarity=-0.097 Sum_probs=89.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
|......+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|...++...+.... +...|..+..+|
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~ 91 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK--FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh--hhHHHHHHHHHH
Confidence 7778889999999999999999984432 235678999999999999999999999999987654 788999999999
Q ss_pred HhhCChHHHHHHHHHhccCCC-CHhhHHHHH
Q 042593 183 AKCGCIFSASKLFEDTSVDRK-NLVSWTTII 212 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li 212 (352)
...|++++|.+.|++..+..| +...+..+-
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 999999999999999876655 455554443
No 143
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.40 E-value=1.3e-06 Score=77.94 Aligned_cols=202 Identities=6% Similarity=-0.088 Sum_probs=142.2
Q ss_pred HHHHhcCCHHHHHHHHHHhHhccCCCCCh---------------hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCch
Q 042593 108 DGYSRMNRSNEALALFRRMAACEYTEPSE---------------ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDI 172 (352)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~---------------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 172 (352)
..+.+.|++++|++.|.++.+......+. ..+..+...|...|++++|...+..+.+.-......
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 45678899999999999985543322221 137788999999999999999999886532111022
Q ss_pred ----hhHHHHHHHHHhhCChHHHHHHHHHhccC------CC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcc
Q 042593 173 ----HVSNCLIDTYAKCGCIFSASKLFEDTSVD------RK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRS 241 (352)
Q Consensus 173 ----~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 241 (352)
.+.+.+-..+...|+.+.|.++++..... .+ -..++..+...|...|++++|..++++....-...+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~-- 169 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD-- 169 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS--
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc--
Confidence 23334444455678899999998875432 22 246788899999999999999999998765321111
Q ss_pred hhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC---CCC-----chhhHHHHHHHHhccc
Q 042593 242 WRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ---ITN-----VVVWRTGFLRLLINSY 313 (352)
Q Consensus 242 ~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~-----~~~~~~li~~~~~~g~ 313 (352)
.-+-...++..++..|...|++++|..+++..... .++ ...+..+...+...|+
T Consensus 170 ------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 231 (434)
T 4b4t_Q 170 ------------------DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKD 231 (434)
T ss_dssp ------------------CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSC
T ss_pred ------------------cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh
Confidence 11113457888999999999999999998766433 122 2456667777888899
Q ss_pred ccCcccccccchhhhh
Q 042593 314 FFSPITLNSQRLFFFP 329 (352)
Q Consensus 314 ~~~a~~~~~~~~~~~~ 329 (352)
+++|...+.+.+..++
T Consensus 232 y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 232 YKTAFSYFFESFESYH 247 (434)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999888888765443
No 144
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.37 E-value=6.1e-06 Score=61.41 Aligned_cols=96 Identities=11% Similarity=-0.098 Sum_probs=74.0
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHH
Q 042593 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGF 215 (352)
Q Consensus 137 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~ 215 (352)
..+..+...+.+.|++++|...++...+.... +...|..+..+|.+.|++++|...|+......| +...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY--DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 35566667777888888888888888776543 677788888888888888888888887665543 566777788888
Q ss_pred HcCCCHHHHHHHHHHHHhc
Q 042593 216 AMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~~ 234 (352)
...|++++|...|++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888887764
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.36 E-value=5.5e-06 Score=62.26 Aligned_cols=96 Identities=10% Similarity=-0.086 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHH
Q 042593 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGF 215 (352)
Q Consensus 137 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~ 215 (352)
..+..+...+.+.|++++|...++...+.... +...|..+..+|...|++++|.+.|++.....| +...+..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY--DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 46667777888889999999999888877544 778888888888899999999999988765544 567788888888
Q ss_pred HcCCCHHHHHHHHHHHHhc
Q 042593 216 AMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~~ 234 (352)
...|++++|...|++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999887764
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.35 E-value=3e-06 Score=63.70 Aligned_cols=98 Identities=9% Similarity=-0.011 Sum_probs=83.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
+..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|...++...+.... +...+..+..+|
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~~~ 99 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX--EPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CchHHHHHHHHH
Confidence 7778888999999999999999984432 235668889999999999999999999999987644 778889999999
Q ss_pred HhhCChHHHHHHHHHhccCCCC
Q 042593 183 AKCGCIFSASKLFEDTSVDRKN 204 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~~~~ 204 (352)
...|++++|.+.|+......|+
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIAN 121 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHHCcC
Confidence 9999999999999987655443
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.33 E-value=2.1e-06 Score=66.49 Aligned_cols=122 Identities=11% Similarity=0.021 Sum_probs=92.7
Q ss_pred hcCChhHHHHHhccCCC--C-CchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHH-H
Q 042593 71 SLGFLKDSSKLFDELPE--R-NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA-I 146 (352)
Q Consensus 71 ~~g~~~~a~~~~~~m~~--~-~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~-~ 146 (352)
..|++++|...+++..+ | +... |..+...+...|++++|...|++...... .+...+..+..+ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~----------~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~ 89 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQ----------WALLGEYYLWQNDYSNSLLAYRQALQLRG--ENAELYAALATVLY 89 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHH----------HHHHHHHHHHTTCHHHHHHHHHHHHHHHC--SCHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHH
Confidence 45667777777766543 3 3334 88888999999999999999999844332 355677788888 7
Q ss_pred HhCCCh--hhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHh
Q 042593 147 WKNGEV--RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLV 206 (352)
Q Consensus 147 ~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 206 (352)
...|++ ++|...++...+.... +...+..+..+|...|++++|...|++.....|+..
T Consensus 90 ~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 90 YQASQHMTAQTRAMIDKALALDSN--EITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HhcCCcchHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 789998 9999999999987644 678888999999999999999999999876655533
No 148
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.32 E-value=5.6e-07 Score=71.30 Aligned_cols=154 Identities=12% Similarity=-0.060 Sum_probs=105.1
Q ss_pred HHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-C----------------Hhh
Q 042593 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-N----------------LVS 207 (352)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~----------------~~~ 207 (352)
.....|+++.+...++.-.+.... ....+..+...+.+.|++++|.+.|++.....| + ...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQ--SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp ---------CCCSGGGCCHHHHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 344556666666666544332222 455677778888889999999999988765432 2 267
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHH
Q 042593 208 WTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEV 287 (352)
Q Consensus 208 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 287 (352)
|..+..+|...|++++|...+++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~--------------------------p~~~~~~~~lg~~~~~~~~~~~A~~~ 144 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKID--------------------------KNNVKALYKLGVANMYFGFLEEAKEN 144 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--------------------------TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------------------cccHHHHHHHHHHHHHcccHHHHHHH
Confidence 8888999999999999999999988741 23667888899999999999999999
Q ss_pred HhcCCCC-CCCchhhHHHHHHHHhcccccCcccccccchh
Q 042593 288 ASGIPSQ-ITNVVVWRTGFLRLLINSYFFSPITLNSQRLF 326 (352)
Q Consensus 288 ~~~m~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 326 (352)
|++.... +.+...+..+...+...++.+++.......++
T Consensus 145 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 145 LYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9987665 55777888888888888888887744444333
No 149
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=3.6e-05 Score=68.51 Aligned_cols=197 Identities=10% Similarity=-0.051 Sum_probs=143.5
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhCCCC-c---------------hhhHHHHHHHHHhcCChhHHHHHhccCCC-----CC
Q 042593 31 IRTCVTLSYPNLGTQLHAVFSKVGFQS-H---------------VYVNTALGDMYVSLGFLKDSSKLFDELPE-----RN 89 (352)
Q Consensus 31 l~~~~~~g~~~~a~~~~~~m~~~~~~~-~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~ 89 (352)
.+.+.+.|++++|.+.|..+.+..-.. + ...+..|...|...|++++|.+.+..+.+ ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 456788999999999999988754211 1 12477899999999999999999998764 11
Q ss_pred chhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHh---ccCCCCC-hhhHHHHHHHHHhCCChhhHHHHHHHHHhc
Q 042593 90 LVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAA---CEYTEPS-EITILAVLPAIWKNGEVRNCQLIHGYGEKR 165 (352)
Q Consensus 90 ~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 165 (352)
... ..++ .+.+-..+...|+.++|..++++... ..+..+. ..++..+...+...|++++|..+++++...
T Consensus 91 ~~~-~~~~-----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 91 SKT-VKVL-----KTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HHH-HHHH-----HHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHH-HHHH-----HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 111 1111 45555566677899999999888632 2223333 347788999999999999999999987643
Q ss_pred ----CCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC-----CC-C--HhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 166 ----GFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-----RK-N--LVSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 166 ----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
+-.+....++..++..|...|++++|...++..... .| . ...+..+...+...|++++|...|.+..+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 165 FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 222213568889999999999999999999876432 22 1 24566777788899999999998888765
No 150
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.27 E-value=7.6e-06 Score=70.63 Aligned_cols=129 Identities=11% Similarity=-0.050 Sum_probs=105.0
Q ss_pred hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCc--------------hhhHHHHHHHHHhhCChHHHHHHHHHhccC
Q 042593 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD--------------IHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201 (352)
Q Consensus 136 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 201 (352)
...+..+...+.+.|++++|...|++..+..... . ...|..+..+|.+.|++++|.+.+++....
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~-~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYE-SSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC-CCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcc-ccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4578888889999999999999999998876542 2 588899999999999999999999987665
Q ss_pred C-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCC
Q 042593 202 R-KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGR 280 (352)
Q Consensus 202 ~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 280 (352)
. .+...|..+..+|...|++++|...|++..+.. | -+...+..+..++.+.|+
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P------------------------~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--P------------------------NNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--S------------------------SCHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--C------------------------CCHHHHHHHHHHHHHHHH
Confidence 4 468889999999999999999999999988742 2 255677788888888888
Q ss_pred hhHHH-HHHhcC
Q 042593 281 LEQAE-EVASGI 291 (352)
Q Consensus 281 ~~~A~-~~~~~m 291 (352)
.++|. ..++.|
T Consensus 280 ~~~a~~~~~~~~ 291 (336)
T 1p5q_A 280 QLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 88883 455544
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.27 E-value=1.3e-05 Score=59.53 Aligned_cols=113 Identities=11% Similarity=0.000 Sum_probs=87.6
Q ss_pred HHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHH
Q 042593 80 KLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIH 159 (352)
Q Consensus 80 ~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 159 (352)
..|++..+.++..... +..+...+.+.|++++|...|++..... +.+...|..+..++.+.|++++|...+
T Consensus 5 ~~l~~al~~~p~~~~~-------~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~ 75 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQ-------LYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSY 75 (142)
T ss_dssp ----CCTTCCHHHHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHcCCHHHHHH-------HHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3455555544433222 6677788999999999999999984432 235668888999999999999999999
Q ss_pred HHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC
Q 042593 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 203 (352)
+...+.... +...+..+..+|...|++++|.+.|+......|
T Consensus 76 ~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 76 SYGALMDIN--EPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHHHCTT--CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999988654 778888999999999999999999998765544
No 152
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.24 E-value=2e-05 Score=57.83 Aligned_cols=99 Identities=11% Similarity=-0.093 Sum_probs=83.5
Q ss_pred CChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHH
Q 042593 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTII 212 (352)
Q Consensus 134 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li 212 (352)
.+...+..+...+...|++++|...++...+.... +...+..+..++...|++++|...++......| +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 45667888888899999999999999998887644 678888999999999999999999988765544 578888899
Q ss_pred HHHHcCCCHHHHHHHHHHHHhc
Q 042593 213 SGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
.++...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 153
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.24 E-value=2.6e-05 Score=59.47 Aligned_cols=97 Identities=12% Similarity=-0.065 Sum_probs=67.1
Q ss_pred hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHH
Q 042593 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISG 214 (352)
Q Consensus 136 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~ 214 (352)
...+..+...+.+.|++++|...+++..+.... +...|..+..+|.+.|++++|...|++.....| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA--NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 345666666777777777777777777766433 566777777777777777777777777654433 46667777777
Q ss_pred HHcCCCHHHHHHHHHHHHhc
Q 042593 215 FAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 215 ~~~~~~~~~a~~~~~~m~~~ 234 (352)
|...|++++|...|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 77777777777777776653
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.23 E-value=1.6e-05 Score=57.61 Aligned_cols=94 Identities=10% Similarity=-0.094 Sum_probs=56.4
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHH
Q 042593 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFA 216 (352)
Q Consensus 138 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~ 216 (352)
.+......+.+.|++++|...+++..+.... +...|..+..+|.+.|++++|.+.|++.....| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE--DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444555556666666666666666555432 555666666666666666666666666544433 4555666666666
Q ss_pred cCCCHHHHHHHHHHHHh
Q 042593 217 MHGMGKEAVENFERMQK 233 (352)
Q Consensus 217 ~~~~~~~a~~~~~~m~~ 233 (352)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 66666666666666554
No 155
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.22 E-value=0.00017 Score=61.83 Aligned_cols=199 Identities=8% Similarity=-0.061 Sum_probs=146.1
Q ss_pred CcccHHHHHHHHHhcC-CcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhc-C-ChhHHHHHhccCCCCCchhHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLS-YPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL-G-FLKDSSKLFDELPERNLVTWNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g-~~~~a~~~~~~m~~~~~~~~~~~i~~ 99 (352)
+..+|+.--.++...| .+++++++++.+.... +-+..+|+.-..++.+. + ++++++++++++.+.|+..|.+
T Consensus 87 ~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~A---- 161 (349)
T 3q7a_A 87 HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHT---- 161 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHH----
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHH----
Confidence 3445666666677777 5999999999999866 55778888888888776 7 8999999999999866666555
Q ss_pred HHhHHHHHHHHHhcCCHH--------HHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCC-------hhhHHHHHHHHHh
Q 042593 100 LVKWTGIIDGYSRMNRSN--------EALALFRRMAACEYTEPSEITILAVLPAIWKNGE-------VRNCQLIHGYGEK 164 (352)
Q Consensus 100 ~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~-------~~~a~~~~~~~~~ 164 (352)
|+.-.-...+.|.++ ++++.++++.. .. .-|...|+.....+.+.+. ++++.+.++....
T Consensus 162 ---W~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~-~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~ 236 (349)
T 3q7a_A 162 ---WAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR-VD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH 236 (349)
T ss_dssp ---HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-HC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhccccccchhhHHHHHHHHHHHHH-hC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH
Confidence 665555555555555 89999999844 32 2466688888888888776 5788888888888
Q ss_pred cCCCCCchhhHHHHHHHHHhhCCh--------------------HHHHHHHHHhccC-------CCCHhhHHHHHHHHHc
Q 042593 165 RGFNAFDIHVSNCLIDTYAKCGCI--------------------FSASKLFEDTSVD-------RKNLVSWTTIISGFAM 217 (352)
Q Consensus 165 ~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~~-------~~~~~~~~~li~~~~~ 217 (352)
..+. +...|+-+-..+.+.|+- ....++..++... .+.......|...|..
T Consensus 237 ~~P~--n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 314 (349)
T 3q7a_A 237 LIPH--NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIE 314 (349)
T ss_dssp HCTT--CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHH
T ss_pred hCCC--CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHh
Confidence 7655 889998888788777754 3344444444333 2567888899999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 042593 218 HGMGKEAVENFERMQK 233 (352)
Q Consensus 218 ~~~~~~a~~~~~~m~~ 233 (352)
.|+.++|.++++.+.+
T Consensus 315 ~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 315 QNRVDDAAKVFEKLSS 330 (349)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 9999999999999875
No 156
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.22 E-value=1.3e-05 Score=58.35 Aligned_cols=110 Identities=9% Similarity=0.055 Sum_probs=85.4
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--C-CchhHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--R-NLVTWNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~-~~~~~~~~i~~ 99 (352)
....+..+...+.+.|++++|++.|+...+.. |.+...|..+..+|.+.|++++|++.|++..+ | +...+..+..+
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34567889999999999999999999999876 55778899999999999999999999998764 2 11222222222
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhH
Q 042593 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139 (352)
Q Consensus 100 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~ 139 (352)
|..+..++...|++++|++.|++... ..||..+.
T Consensus 86 ---~~~lg~~~~~~~~~~~A~~~~~kal~---~~~~~~~~ 119 (127)
T 4gcn_A 86 ---MSRAGNAFQKQNDLSLAVQWFHRSLS---EFRDPELV 119 (127)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHH---HSCCHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHh---hCcCHHHH
Confidence 77888889999999999999998744 23555443
No 157
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.20 E-value=2e-05 Score=58.54 Aligned_cols=63 Identities=10% Similarity=-0.082 Sum_probs=32.0
Q ss_pred chhhHHHHHHHHHhhCChHHHHHHHHHhccCCCC----HhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN----LVSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
+...+..+...+...|++++|.+.|++.....|+ ...|..+..+|...|++++|...+++..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 93 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE 93 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 3444444555555555555555555554444443 34445555555555555555555555443
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.20 E-value=5.8e-06 Score=63.16 Aligned_cols=97 Identities=8% Similarity=-0.019 Sum_probs=71.8
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CC-chhHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RN-LVTWNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~~i~~ 99 (352)
+...+..+...+.+.|++++|.+.|+...+.. +.+...|..+..+|.+.|++++|+..|++..+ |+ ...
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~------- 81 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKA------- 81 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH-------
Confidence 45667777778888888888888888887765 44667777888888888888888888887654 32 233
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhHhcc
Q 042593 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACE 130 (352)
Q Consensus 100 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 130 (352)
|..+..++...|++++|...|++.....
T Consensus 82 ---~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 82 ---WSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 7777777888888888888888774433
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.20 E-value=5.2e-05 Score=53.51 Aligned_cols=93 Identities=13% Similarity=-0.052 Sum_probs=44.9
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHc
Q 042593 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAM 217 (352)
Q Consensus 139 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~ 217 (352)
+..+...+...|++++|...++...+.... +...+..+..++...|++++|...+++.....| +...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPH--NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 334444444455555555555554443322 344444555555555555555555554433322 34444555555555
Q ss_pred CCCHHHHHHHHHHHHh
Q 042593 218 HGMGKEAVENFERMQK 233 (352)
Q Consensus 218 ~~~~~~a~~~~~~m~~ 233 (352)
.|++++|...+++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 5555555555555443
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.20 E-value=8.5e-06 Score=57.20 Aligned_cols=95 Identities=9% Similarity=0.021 Sum_probs=81.2
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CC---chhHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RN---LVTWNVII 97 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~---~~~~~~~i 97 (352)
+...+..+...+.+.|++++|...++...+.. +.+...+..+..++...|++++|...|++..+ |+ ...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~----- 78 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV----- 78 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHH-----
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHH-----
Confidence 56778888899999999999999999998876 45678888999999999999999999998764 33 333
Q ss_pred HHHHhHHHHHHHHHhc-CCHHHHHHHHHHhHh
Q 042593 98 TGLVKWTGIIDGYSRM-NRSNEALALFRRMAA 128 (352)
Q Consensus 98 ~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~ 128 (352)
|..+...+... |++++|.+.+++...
T Consensus 79 -----~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 79 -----WAAKADALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp -----HHHHHHHHTTCSSCSHHHHHHHHHHGG
T ss_pred -----HHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 88888999999 999999999999843
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.20 E-value=6.4e-06 Score=60.06 Aligned_cols=91 Identities=12% Similarity=0.043 Sum_probs=39.5
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC----C----HhhHHHHH
Q 042593 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK----N----LVSWTTII 212 (352)
Q Consensus 141 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~----~~~~~~li 212 (352)
.+...+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|++.+++.....| + ..+|..+-
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~--~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELDPS--NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 3344444444444444444444443221 344444444444444444444444444322211 0 12344444
Q ss_pred HHHHcCCCHHHHHHHHHHHHh
Q 042593 213 SGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~m~~ 233 (352)
.++...|++++|.+.|++..+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 445555555555555555443
No 162
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.19 E-value=4.2e-05 Score=55.32 Aligned_cols=96 Identities=8% Similarity=-0.128 Sum_probs=83.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
|..+...+.+.|++++|+..|++..... +.+...|..+..++.+.|++++|...++...+.... +...+..+..++
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~ 82 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHH
Confidence 7778888999999999999999984432 235678999999999999999999999999988644 788899999999
Q ss_pred HhhCChHHHHHHHHHhccCC
Q 042593 183 AKCGCIFSASKLFEDTSVDR 202 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~~ 202 (352)
...|++++|.+.|++.....
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999876544
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.19 E-value=7.2e-05 Score=52.76 Aligned_cols=105 Identities=8% Similarity=-0.095 Sum_probs=87.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.... +...+..+..++
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~ 82 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD--WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc--cHHHHHHHHHHH
Confidence 7778888999999999999999984432 235668888999999999999999999999887544 788899999999
Q ss_pred HhhCChHHHHHHHHHhccCCC-CHhhHHHH
Q 042593 183 AKCGCIFSASKLFEDTSVDRK-NLVSWTTI 211 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l 211 (352)
...|++++|.+.++......| +...+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 112 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 999999999999999876655 44444443
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.19 E-value=1.1e-05 Score=58.37 Aligned_cols=96 Identities=8% Similarity=0.039 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC----C----HhhH
Q 042593 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK----N----LVSW 208 (352)
Q Consensus 137 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~----~~~~ 208 (352)
..+..+...+...|++++|...++...+.... +...+..+..++...|++++|...+++.....| + ..++
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT--NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 35666777778888888888888888776533 677788888888889999999988888655422 2 6778
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 209 TTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 209 ~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
..+..++...|++++|...|++..+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88889999999999999999998874
No 165
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.18 E-value=5.1e-05 Score=62.95 Aligned_cols=138 Identities=9% Similarity=-0.090 Sum_probs=102.5
Q ss_pred HHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC--hhhHH
Q 042593 63 TALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS--EITIL 140 (352)
Q Consensus 63 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~t~~ 140 (352)
-.+..++...|++++|.++|+.+...++... . ...+...+.+.+++++|+..|+.. .... .|. ...+.
T Consensus 106 LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~-------~~~~a~l~~~~~r~~dA~~~l~~a-~~~~-d~~~~~~a~~ 175 (282)
T 4f3v_A 106 MGFAACEAAQGNYADAMEALEAAPVAGSEHL-V-------AWMKAVVYGAAERWTDVIDQVKSA-GKWP-DKFLAGAAGV 175 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-H-------HHHHHHHHHHTTCHHHHHHHHTTG-GGCS-CHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-H-------HHHHHHHHHHcCCHHHHHHHHHHh-hccC-CcccHHHHHH
Confidence 3466778899999999999999986433221 1 455556889999999999999876 3221 121 23678
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhcCCCCC-chhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHH
Q 042593 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAF-DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTT 210 (352)
Q Consensus 141 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 210 (352)
.+-.++.+.|+.++|...|++.......|. ..........++.+.|+.++|..+|+++....|+...+..
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~a 246 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVAAA 246 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 889999999999999999999875443241 2345667788999999999999999999776777333333
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.17 E-value=8.1e-06 Score=59.97 Aligned_cols=96 Identities=8% Similarity=-0.147 Sum_probs=84.0
Q ss_pred CCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CC-chhHHHHHH
Q 042593 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RN-LVTWNVIIT 98 (352)
Q Consensus 22 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~~i~ 98 (352)
.+...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...|++..+ |+ ...
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~------ 79 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKA------ 79 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH------
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHH------
Confidence 378889999999999999999999999998876 55678899999999999999999999998865 33 333
Q ss_pred HHHhHHHHHHHHHhcCCHHHHHHHHHHhHh
Q 042593 99 GLVKWTGIIDGYSRMNRSNEALALFRRMAA 128 (352)
Q Consensus 99 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 128 (352)
|..+..++...|++++|...|++...
T Consensus 80 ----~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 80 ----HFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp ----HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88889999999999999999999843
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.15 E-value=1.2e-05 Score=58.26 Aligned_cols=110 Identities=9% Similarity=0.086 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCC-CCc----hhhHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN-AFD----IHVSNC 177 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~~ 177 (352)
|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++...+.... +.+ ..++..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 7788889999999999999999984432 235668889999999999999999999998876432 102 678889
Q ss_pred HHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHH
Q 042593 178 LIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISG 214 (352)
Q Consensus 178 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~ 214 (352)
+..++.+.|++++|.+.|+......|+......+...
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999999999999987666776655555443
No 168
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.12 E-value=2.3e-05 Score=58.90 Aligned_cols=132 Identities=10% Similarity=-0.022 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHhccCCC-----CCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC
Q 042593 60 YVNTALGDMYVSLGFLKDSSKLFDELPE-----RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP 134 (352)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p 134 (352)
.++..+...+...|++++|...+++..+ ++... ... .+..+...+...|++++|...+++......-.+
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~---~~~---~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 83 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA---ERI---AYSNLGNAYIFLGEFETASEYYKKTLLLARQLK 83 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH---HHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchH---HHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 3455566666666666666666665543 11110 000 066666777777777777777776532111111
Q ss_pred C----hhhHHHHHHHHHhCCChhhHHHHHHHHHhc----CCCCCchhhHHHHHHHHHhhCChHHHHHHHHH
Q 042593 135 S----EITILAVLPAIWKNGEVRNCQLIHGYGEKR----GFNAFDIHVSNCLIDTYAKCGCIFSASKLFED 197 (352)
Q Consensus 135 ~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 197 (352)
+ ...+..+...+...|++++|...+++..+. +..+.....+..+..++...|++++|.+.+++
T Consensus 84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 1 224445555555666666666555554432 11110123344444444455555555444443
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.12 E-value=3.2e-05 Score=55.79 Aligned_cols=90 Identities=12% Similarity=-0.083 Sum_probs=42.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhh
Q 042593 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC 185 (352)
Q Consensus 106 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 185 (352)
+...+.+.|++++|...|++..+.. +-+...+..+..++...|++++|...+++..+.... +...+..+..+|.+.
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc
Confidence 3344445555555555555542211 112334444444555555555555555555444322 344444555555555
Q ss_pred CChHHHHHHHHHhc
Q 042593 186 GCIFSASKLFEDTS 199 (352)
Q Consensus 186 g~~~~a~~~~~~~~ 199 (352)
|++++|.+.|++..
T Consensus 99 g~~~~A~~~~~~al 112 (121)
T 1hxi_A 99 HNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 55555555555443
No 170
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.11 E-value=9.2e-06 Score=73.28 Aligned_cols=129 Identities=12% Similarity=-0.100 Sum_probs=103.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-------------hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCC
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPS-------------EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNA 169 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 169 (352)
|..+...+.+.|++++|...|++......-.++ ...|..+..++.+.|++++|...+++..+....
T Consensus 271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~- 349 (457)
T 1kt0_A 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA- 349 (457)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-
Confidence 888889999999999999999998553322211 468889999999999999999999999987644
Q ss_pred CchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHH-HHHHHHHh
Q 042593 170 FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAV-ENFERMQK 233 (352)
Q Consensus 170 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~ 233 (352)
+...|..+..+|...|++++|...|++.....| +...+..+..++.+.++.+++. ..+..|..
T Consensus 350 -~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 350 -NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred -cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788899999999999999999999999877755 5677888888888888887775 44555544
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=0.00011 Score=54.38 Aligned_cols=104 Identities=9% Similarity=-0.037 Sum_probs=80.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC----hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPS----EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCL 178 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 178 (352)
+..+...+...|++++|...|++... ..|+ ...+..+..++...|++++|...++...+.... +...+..+
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~ 105 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG--DVKALYRR 105 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--CHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc--CHHHHHHH
Confidence 77788888899999999999998833 3455 467788888888899999999999888876433 67778888
Q ss_pred HHHHHhhCChHHHHHHHHHhccCCCC-HhhHHHH
Q 042593 179 IDTYAKCGCIFSASKLFEDTSVDRKN-LVSWTTI 211 (352)
Q Consensus 179 i~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l 211 (352)
..++...|++++|.+.|++.....|+ ...+..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 139 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 88888999999999998887655443 3444333
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.09 E-value=9.8e-07 Score=79.65 Aligned_cols=147 Identities=9% Similarity=-0.093 Sum_probs=111.8
Q ss_pred ChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCC----------------HhhHHHHHHH
Q 042593 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN----------------LVSWTTIISG 214 (352)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----------------~~~~~~li~~ 214 (352)
++++|...++...+.. |.....+..+...|.+.|++++|...|++.....|+ ...|..+..+
T Consensus 249 ~~~~A~~~~~~~~~~~--~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK--LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEECCCCGGGSCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554443332 215667888899999999999999999987655333 5889999999
Q ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 215 FAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 215 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
|.+.|++++|...+++.++.. | -+...|..+..+|...|++++|...|++....
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~--p------------------------~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLD--S------------------------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--T------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhcCHHHHHHHHHHHHhcC--C------------------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999988742 2 26778889999999999999999999988777
Q ss_pred -CCCchhhHHHHHHHHhcccccCcccccccch
Q 042593 295 -ITNVVVWRTGFLRLLINSYFFSPITLNSQRL 325 (352)
Q Consensus 295 -~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 325 (352)
+.+...+..+...+...++.++|.+...+.+
T Consensus 381 ~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 381 NPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp C----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677888999999999998887775544443
No 173
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.07 E-value=8.2e-06 Score=61.45 Aligned_cols=133 Identities=14% Similarity=0.050 Sum_probs=75.8
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhcCCC----CCchhhHHHHHHHHHhhCChHHHHHHHHHhccC---CCC----Hh
Q 042593 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFN----AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD---RKN----LV 206 (352)
Q Consensus 138 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~----~~ 206 (352)
++..+...+...|++++|...+++..+.... .....++..+...+...|++++|.+.+++.... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444455555555555555555554432111 001235566666777777777777777664332 111 34
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCC-CChhhHHHHHHHHHHcCChhHHH
Q 042593 207 SWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVL-PDIKHYGCLIDILERAGRLEQAE 285 (352)
Q Consensus 207 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~ 285 (352)
.+..+...+...|++++|...+++..+.. ... +.. .....+..+...+...|++++|.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------------~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~ 149 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIA--------------------QEL-KDRIGEGRACWSLGNAYTALGNHDQAM 149 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------------HHT-TCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH--------------------HHc-cchHhHHHHHHHHHHHHHHccCHHHHH
Confidence 56666777777888888888777765421 000 111 12345667777778888888887
Q ss_pred HHHhcC
Q 042593 286 EVASGI 291 (352)
Q Consensus 286 ~~~~~m 291 (352)
+.+++.
T Consensus 150 ~~~~~a 155 (164)
T 3ro3_A 150 HFAEKH 155 (164)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 174
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.06 E-value=0.00041 Score=63.06 Aligned_cols=287 Identities=8% Similarity=-0.107 Sum_probs=164.9
Q ss_pred CcccHHHHHHHHHhcCC-cchHHHHHHHHHHh-CCC-CchhhHHHHHHHHH----hcCChhHHHHHhccCCC-CCchhHH
Q 042593 23 DSFTYSFLIRTCVTLSY-PNLGTQLHAVFSKV-GFQ-SHVYVNTALGDMYV----SLGFLKDSSKLFDELPE-RNLVTWN 94 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~-~~~-~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~-~~~~~~~ 94 (352)
+...|...++...+.+. .+.+..+|+..... |.. .+...|...+..+. ..++++.+.++|+.... |... ..
T Consensus 46 s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~-~~ 124 (493)
T 2uy1_A 46 NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGS-LS 124 (493)
T ss_dssp CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTT-HH
T ss_pred CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhh-HH
Confidence 88888888888877763 46677888887764 533 35677777776543 24568889999988754 3211 11
Q ss_pred HHHHHHH------------------------------------------hHHHHHHHHHhc--CC-----HHHHHHHHHH
Q 042593 95 VIITGLV------------------------------------------KWTGIIDGYSRM--NR-----SNEALALFRR 125 (352)
Q Consensus 95 ~~i~~~~------------------------------------------~~~~li~~~~~~--~~-----~~~a~~~~~~ 125 (352)
.+-..+. .|...+.--... +- .+.+..+|++
T Consensus 125 ~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~ 204 (493)
T 2uy1_A 125 ELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNY 204 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHH
Confidence 1111110 011111100000 00 1234445555
Q ss_pred hHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHH-HHHHHhcc----
Q 042593 126 MAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSAS-KLFEDTSV---- 200 (352)
Q Consensus 126 m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~~~~---- 200 (352)
+.... +.+...|...+.-+.+.|+.+.|..++++.... |.+...+. .|+...+.++.. ++.+....
T Consensus 205 al~~~--p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~ 275 (493)
T 2uy1_A 205 ILDSF--YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAE 275 (493)
T ss_dssp HHHHT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH----HHHHHTTCTHHHHHHHHHTC-----
T ss_pred HHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccc
Confidence 52211 223445555666666777777777777777766 31333322 222221111111 11111100
Q ss_pred -----C-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh------------hHhHHHHHHHHHHhcCCC
Q 042593 201 -----D-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI------------GEEGLKFFDKMVEECEVL 262 (352)
Q Consensus 201 -----~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------~~~a~~~~~~m~~~~~~~ 262 (352)
. ......|-..+....+.+..+.|..+|++. +.. ..+...+. .+.|..+|+...+.++-
T Consensus 276 ~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~- 352 (493)
T 2uy1_A 276 SAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD- 352 (493)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-
T ss_pred hhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-
Confidence 0 001234555566666778899999999998 321 12222222 66788999998886332
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHHHhcccccCcccccccchh
Q 042593 263 PDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQRLF 326 (352)
Q Consensus 263 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 326 (352)
++..+...++...+.|+.+.|..+|+++.. ....|...+.--...|+.+.+..++.+++.
T Consensus 353 -~~~~~~~yid~e~~~~~~~~aR~l~er~~k---~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 353 -STLLKEEFFLFLLRIGDEENARALFKRLEK---TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHSCC---BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344567778888899999999999999853 577888888877888998888887777764
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.05 E-value=2.8e-05 Score=56.08 Aligned_cols=95 Identities=7% Similarity=-0.094 Sum_probs=83.5
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHH
Q 042593 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFA 216 (352)
Q Consensus 138 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~ 216 (352)
.+..+...+.+.|++++|...++...+.... +...|..+..++...|++++|...|++.....| +...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4566777888999999999999999987654 788999999999999999999999999876655 6788999999999
Q ss_pred cCCCHHHHHHHHHHHHhc
Q 042593 217 MHGMGKEAVENFERMQKV 234 (352)
Q Consensus 217 ~~~~~~~a~~~~~~m~~~ 234 (352)
..|++++|...+++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998864
No 176
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.03 E-value=0.00026 Score=60.38 Aligned_cols=181 Identities=9% Similarity=-0.006 Sum_probs=122.1
Q ss_pred cHHHHHHHH---HhcCCcc-hHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCC----------hhHHHHHhccCCCCCch
Q 042593 26 TYSFLIRTC---VTLSYPN-LGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF----------LKDSSKLFDELPERNLV 91 (352)
Q Consensus 26 ~~~~ll~~~---~~~g~~~-~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~ 91 (352)
.|..+...+ .+.|.+. +|+++.+.+.... |-+..+|+.--..+...+. +++++.+++.+...++.
T Consensus 28 ~y~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK 106 (331)
T 3dss_A 28 LYQSATQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK 106 (331)
T ss_dssp HHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC
Confidence 444444433 3566666 7899999988765 3334446554444433332 57888888888764444
Q ss_pred hHHHHHHHHHhHHHHHHHHHhcC--CHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCC-hhhHHHHHHHHHhcCCC
Q 042593 92 TWNVIITGLVKWTGIIDGYSRMN--RSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGE-VRNCQLIHGYGEKRGFN 168 (352)
Q Consensus 92 ~~~~~i~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~ 168 (352)
.|.+ |+.-...+.+.+ ++++++.+++++.... +-|...|+.-.-.+...|. ++++...++.+.+..+.
T Consensus 107 ny~a-------W~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~ 177 (331)
T 3dss_A 107 SYGT-------WHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS 177 (331)
T ss_dssp CHHH-------HHHHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC
T ss_pred CHHH-------HHHHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC
Confidence 4444 777767777777 4899999999995433 2456678777777778888 58999999999988765
Q ss_pred CCchhhHHHHHHHHHhh--------------CChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcC
Q 042593 169 AFDIHVSNCLIDTYAKC--------------GCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMH 218 (352)
Q Consensus 169 ~~~~~~~~~li~~~~~~--------------g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~ 218 (352)
+...|+....++.+. +.++++++.++..... +-|...|+-+-..+.+.
T Consensus 178 --N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 178 --NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp --CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSS
T ss_pred --CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 888888877777665 4577888888876544 44677776444434333
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.02 E-value=7.6e-05 Score=53.96 Aligned_cols=89 Identities=13% Similarity=0.011 Sum_probs=42.6
Q ss_pred HHHHHhCCChhhHHHHHHHHHhcCCCCCch---hhHHHHHHHHHhhCChHHHHHHHHHhccCCCC----HhhHHHHHHHH
Q 042593 143 LPAIWKNGEVRNCQLIHGYGEKRGFNAFDI---HVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN----LVSWTTIISGF 215 (352)
Q Consensus 143 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~li~~~ 215 (352)
...+...|++++|...++...+.... +. ..+..+..++.+.|++++|...|+......|+ ...+..+..++
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPN--GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSS--STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCC--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 33444455555555555554443322 12 34444455555555555555555554333222 33444455555
Q ss_pred HcCCCHHHHHHHHHHHHh
Q 042593 216 AMHGMGKEAVENFERMQK 233 (352)
Q Consensus 216 ~~~~~~~~a~~~~~~m~~ 233 (352)
...|++++|...|+++.+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555555544
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.02 E-value=0.00011 Score=53.07 Aligned_cols=101 Identities=7% Similarity=-0.142 Sum_probs=80.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCc---hhhHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPS-EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFD---IHVSNCL 178 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 178 (352)
+..+...+...|++++|...|++......-.+. ...+..+..++.+.|++++|...++...+.... + ...+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT--HDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--STTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC--CcccHHHHHHH
Confidence 445567788999999999999998443321111 147788889999999999999999999887644 4 6678889
Q ss_pred HHHHHhhCChHHHHHHHHHhccCCCCH
Q 042593 179 IDTYAKCGCIFSASKLFEDTSVDRKNL 205 (352)
Q Consensus 179 i~~~~~~g~~~~a~~~~~~~~~~~~~~ 205 (352)
..++.+.|++++|.+.|+.+....|+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 999999999999999999987666653
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.99 E-value=1.1e-05 Score=73.12 Aligned_cols=124 Identities=12% Similarity=0.006 Sum_probs=91.1
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCC
Q 042593 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHG 219 (352)
Q Consensus 141 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~ 219 (352)
.+...+.+.|++++|...+++..+.... +...+..+..+|.+.|++++|.+.+++..+..| +...|..+..+|...|
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 3344567889999999999988887543 688888999999999999999999988776644 5788888888999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHH--HHHcCChhHHHHHHhcCC
Q 042593 220 MGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDI--LERAGRLEQAEEVASGIP 292 (352)
Q Consensus 220 ~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~ 292 (352)
++++|.+.+++..+.. | -+...+..+..+ +.+.|++++|.+.+++..
T Consensus 89 ~~~eA~~~~~~al~~~--p------------------------~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~ 137 (477)
T 1wao_1 89 KFRAALRDYETVVKVK--P------------------------HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 137 (477)
T ss_dssp CHHHHHHHHHHHHHHS--T------------------------TCTTHHHHHHHHHHHHHHHHHCCC------CC
T ss_pred CHHHHHHHHHHHHHhC--C------------------------CCHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 9999999999887642 1 133445555555 788899999998887543
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.97 E-value=6.6e-06 Score=58.94 Aligned_cols=85 Identities=12% Similarity=0.069 Sum_probs=58.2
Q ss_pred hcCCcchHHHHHHHHHHhC--CCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCc-hhHHHHHHHHHhHHHHHHHH
Q 042593 36 TLSYPNLGTQLHAVFSKVG--FQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNL-VTWNVIITGLVKWTGIIDGY 110 (352)
Q Consensus 36 ~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~-~~~~~~i~~~~~~~~li~~~ 110 (352)
..|++++|+..|+...+.+ -+.+...+..+..+|...|++++|+..|++..+ |+. .. +..+..++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~----------~~~l~~~~ 71 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL----------RVFYAMVL 71 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH----------HHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH----------HHHHHHHH
Confidence 4577888888888887754 233556777888888888888888888887764 332 22 67777788
Q ss_pred HhcCCHHHHHHHHHHhHhcc
Q 042593 111 SRMNRSNEALALFRRMAACE 130 (352)
Q Consensus 111 ~~~~~~~~a~~~~~~m~~~~ 130 (352)
...|++++|...|++.....
T Consensus 72 ~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 72 YNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 88888888888888774433
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.92 E-value=3.4e-05 Score=69.93 Aligned_cols=122 Identities=9% Similarity=-0.054 Sum_probs=94.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhccCCCC-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEP-SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 104 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
..+...+.+.|++++|.+.|++..+. .| +..++..+..++.+.|++++|...+++..+.... +...+..+..+|
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~~~~~lg~~~ 84 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--YIKGYYRRAASN 84 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Confidence 33445678899999999999998443 34 4678999999999999999999999999987544 788999999999
Q ss_pred HhhCChHHHHHHHHHhccCCC-CHhhHHHHHHH--HHcCCCHHHHHHHHHH
Q 042593 183 AKCGCIFSASKLFEDTSVDRK-NLVSWTTIISG--FAMHGMGKEAVENFER 230 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~--~~~~~~~~~a~~~~~~ 230 (352)
.+.|++++|.+.|++..+..| +...+..+..+ +.+.|++++|.+.+++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999766544 44555555555 7788888888888765
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.90 E-value=2.9e-05 Score=67.01 Aligned_cols=131 Identities=8% Similarity=-0.131 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHhhCChHHHHHHHHHhccCCCCH------------------hhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 173 HVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL------------------VSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 173 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~------------------~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
..+..+...+.+.|++++|...|++.....|+. ..|..+..+|.+.|++++|...+++.++.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 259 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE 259 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 334455555556666666666666544333332 27888999999999999999999998873
Q ss_pred CCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHH-HHhcc
Q 042593 235 GLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLR-LLINS 312 (352)
Q Consensus 235 ~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~-~~~~g 312 (352)
. +-+...|..+..+|...|++++|...|++.... +.+...+..+... ....+
T Consensus 260 ~--------------------------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~ 313 (338)
T 2if4_A 260 E--------------------------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA 313 (338)
T ss_dssp C--------------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------
T ss_pred C--------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 2 226778899999999999999999999999877 4555666666554 34456
Q ss_pred cccCcccccccchhhhh
Q 042593 313 YFFSPITLNSQRLFFFP 329 (352)
Q Consensus 313 ~~~~a~~~~~~~~~~~~ 329 (352)
..+++...+..++...|
T Consensus 314 ~~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 314 LYQKQKEMYKGIFKGKD 330 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHhhCCCC
Confidence 66677777777665444
No 183
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.88 E-value=3.2e-05 Score=69.93 Aligned_cols=131 Identities=5% Similarity=-0.161 Sum_probs=97.9
Q ss_pred HHhCCChhhHHHHHHHHHhc-----CCC-CCchhhHHHHHHHHHhhCChHHHHHHHHHhccC--------CCC-HhhHHH
Q 042593 146 IWKNGEVRNCQLIHGYGEKR-----GFN-AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD--------RKN-LVSWTT 210 (352)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~-----~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~~-~~~~~~ 210 (352)
+...|++++|+.++++..+. |.. |....+++.|..+|...|++++|+.++++.... .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 55789999999999887653 222 213568899999999999999999999875432 454 467999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhc
Q 042593 211 IISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASG 290 (352)
Q Consensus 211 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 290 (352)
|...|...|++++|+.++++..+ +++..... ..+-...+.+.+-.++...|.+++|+.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~-----------------i~~~~lG~-~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~ 460 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYA-----------------ILLVTHGP-SHPITKDLEAMRMQTEMELRMFRQNEFMYHK 460 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-----------------HHHHHTCT-TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH-----------------HHHHHhCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998665 22222211 2222345667778888899999999999988
Q ss_pred CCCC
Q 042593 291 IPSQ 294 (352)
Q Consensus 291 m~~~ 294 (352)
+++.
T Consensus 461 ~~~~ 464 (490)
T 3n71_A 461 MREA 464 (490)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.85 E-value=3.6e-05 Score=67.30 Aligned_cols=125 Identities=10% Similarity=-0.141 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHhhCChHHHHHHHHHhcc----------------C-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 042593 173 HVSNCLIDTYAKCGCIFSASKLFEDTSV----------------D-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235 (352)
Q Consensus 173 ~~~~~li~~~~~~g~~~~a~~~~~~~~~----------------~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 235 (352)
..+..+...+.+.|++++|.+.|++... . +.+...|..+..+|.+.|++++|...+++..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 3466677777888888888888877654 2 2245677778888888888888888888877631
Q ss_pred CCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccc
Q 042593 236 LKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYF 314 (352)
Q Consensus 236 ~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~ 314 (352)
| -+...+..+..+|.+.|++++|.+.|++.... +.+...+..+...+...++.
T Consensus 304 --p------------------------~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 304 --P------------------------SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp --T------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred --c------------------------hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 2 25667777888888888888888888877655 44566777777777777777
Q ss_pred cCccccccc
Q 042593 315 FSPITLNSQ 323 (352)
Q Consensus 315 ~~a~~~~~~ 323 (352)
+++.+...+
T Consensus 358 ~~a~k~~~~ 366 (370)
T 1ihg_A 358 KDKEKAAYA 366 (370)
T ss_dssp HHHHHCCC-
T ss_pred HHHHHHHHH
Confidence 666554433
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.85 E-value=6.4e-05 Score=64.87 Aligned_cols=127 Identities=9% Similarity=-0.065 Sum_probs=78.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh------------------hHHHHHHHHHhCCChhhHHHHHHHHHh
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI------------------TILAVLPAIWKNGEVRNCQLIHGYGEK 164 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~------------------t~~~ll~~~~~~~~~~~a~~~~~~~~~ 164 (352)
|..+...+.+.|++++|...|++.... .|+.. .|..+..++.+.|++++|...++...+
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 778888899999999999999997442 24433 778888889999999999999999888
Q ss_pred cCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHH-HHcCCCHHHHHHHHHHHHhc
Q 042593 165 RGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISG-FAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 165 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~ 234 (352)
.... +...|..+..+|...|++++|.+.|++.....| +...+..+... ....+..+++...|..|...
T Consensus 259 ~~p~--~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 259 EEEK--NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HCTT--CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred hCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 7543 788888999999999999999999999876655 44555555544 33455677888888887754
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.83 E-value=3.6e-05 Score=55.01 Aligned_cols=85 Identities=11% Similarity=-0.073 Sum_probs=47.7
Q ss_pred CCChhhHHHHHHHHHhcCCC-CCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHH
Q 042593 149 NGEVRNCQLIHGYGEKRGFN-AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVE 226 (352)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~ 226 (352)
.|++++|...+++..+.+.. |.+...+..+..+|.+.|++++|.+.|++.....| +...+..+..++...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45566666666666554311 21445566666666666666666666666544433 45556666666666666666666
Q ss_pred HHHHHHh
Q 042593 227 NFERMQK 233 (352)
Q Consensus 227 ~~~~m~~ 233 (352)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.83 E-value=0.00019 Score=62.63 Aligned_cols=90 Identities=11% Similarity=0.039 Sum_probs=63.5
Q ss_pred chhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHH
Q 042593 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGL 249 (352)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~ 249 (352)
+..+|..+..+|.+.|++++|.+.+++.....| +...|..+..+|...|++++|...|++..+.. |
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P----------- 338 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--P----------- 338 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----------
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--C-----------
Confidence 566777788888888888888888887766544 56777778888888888888888888877631 2
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHH
Q 042593 250 KFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEE 286 (352)
Q Consensus 250 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 286 (352)
-+...+..+..++.+.++.+++.+
T Consensus 339 -------------~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 339 -------------EDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -------------TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 144555566666666666665543
No 188
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.80 E-value=8.3e-05 Score=52.06 Aligned_cols=96 Identities=13% Similarity=-0.009 Sum_probs=78.1
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhH
Q 042593 204 NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQ 283 (352)
Q Consensus 204 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 283 (352)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------------------------p~~~~~~~~lg~~~~~~g~~~~ 56 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--------------------------PQNPVGYSNKAMALIKLGEYTQ 56 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------------------------TTCHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------------------------CCCHHHHHHHHHHHHHhcCHHH
Confidence 45677888889999999999999999988742 2256788899999999999999
Q ss_pred HHHHHhcCCCC-CCC------chhhHHHHHHHHhcccccCcccccccch
Q 042593 284 AEEVASGIPSQ-ITN------VVVWRTGFLRLLINSYFFSPITLNSQRL 325 (352)
Q Consensus 284 A~~~~~~m~~~-~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~~ 325 (352)
|.+.+++.... +.+ ...+..+...+...|+++.|+..+.+..
T Consensus 57 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 57 AIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp HHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 99999988766 334 5677788888889999999988777643
No 189
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.80 E-value=0.00021 Score=64.62 Aligned_cols=128 Identities=9% Similarity=-0.157 Sum_probs=98.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhc--cCC---CCCh-hhHHHHHHHHHhCCChhhHHHHHHHHHhc-----CCC-CCchhh
Q 042593 107 IDGYSRMNRSNEALALFRRMAAC--EYT---EPSE-ITILAVLPAIWKNGEVRNCQLIHGYGEKR-----GFN-AFDIHV 174 (352)
Q Consensus 107 i~~~~~~~~~~~a~~~~~~m~~~--~~~---~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~~~~ 174 (352)
+..+...|++++|+.++++.+.. .-+ .|+. .+++.+..+|...|++++|..++++..+. |.. |....+
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34566889999999999887432 112 2332 47999999999999999999999987642 433 214568
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHhccC--------CCCH-hhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 175 SNCLIDTYAKCGCIFSASKLFEDTSVD--------RKNL-VSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 175 ~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
++.|...|...|++++|+.++++.... .|++ .+.+.+-.++...+.+++|+.++.++.+.
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999875432 3443 45667778888999999999999998763
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.74 E-value=0.00022 Score=54.07 Aligned_cols=64 Identities=13% Similarity=0.046 Sum_probs=45.9
Q ss_pred chhhHHHHHHHHHhhCChHHHHHHHHHhccCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR-KNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
+...|..+..+|.+.|++++|...++...... .+...|..+..+|...|++++|...|++..+.
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 45667777777777777777777777765443 35677777777777777888777777777653
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.74 E-value=0.00032 Score=53.10 Aligned_cols=101 Identities=7% Similarity=-0.109 Sum_probs=83.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhcc-------CC--------CC-ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcC
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACE-------YT--------EP-SEITILAVLPAIWKNGEVRNCQLIHGYGEKRG 166 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~-------~~--------~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 166 (352)
+......+.+.|++++|+..|.+..... .. .| +...|..+..++.+.|++++|...++...+..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 7778888999999999999999984430 00 12 23578889999999999999999999999885
Q ss_pred CCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCH
Q 042593 167 FNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205 (352)
Q Consensus 167 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 205 (352)
.. +...|..+..+|...|++++|.+.|+......|+.
T Consensus 94 p~--~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~ 130 (162)
T 3rkv_A 94 ET--NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA 130 (162)
T ss_dssp TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred Cc--chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC
Confidence 44 78899999999999999999999999987666653
No 192
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.62 E-value=0.00096 Score=61.68 Aligned_cols=176 Identities=9% Similarity=-0.023 Sum_probs=134.2
Q ss_pred hcCCc-chHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCC----------hhHHHHHhccCCCCCchhHHHHHHHHHhHH
Q 042593 36 TLSYP-NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF----------LKDSSKLFDELPERNLVTWNVIITGLVKWT 104 (352)
Q Consensus 36 ~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~ 104 (352)
+.|.+ ++|++.++.+.... +-+..+|+.--.++.+.|+ ++++.+.++++.+.++..|.+ |+
T Consensus 40 ~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~a-------W~ 111 (567)
T 1dce_A 40 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGT-------WH 111 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHH-------HH
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHH-------HH
Confidence 44444 57799999999876 4455667777777777666 899999999998755555555 88
Q ss_pred HHHHHHHhcC--CHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCC-ChhhHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 042593 105 GIIDGYSRMN--RSNEALALFRRMAACEYTEPSEITILAVLPAIWKNG-EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181 (352)
Q Consensus 105 ~li~~~~~~~--~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 181 (352)
.-...+.+.+ +++++++.++++.+.. +-+...|+.-..++.+.| ..+++.+.++.+.+..+. +...|+....+
T Consensus 112 hR~w~l~~l~~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~--n~saW~~r~~l 187 (567)
T 1dce_A 112 HRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS--NYSSWHYRSCL 187 (567)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC--CHHHHHHHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC--CccHHHHHHHH
Confidence 8888888888 7799999999995533 246678888888888888 889999999999887655 88899888888
Q ss_pred HHhh--------------CChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHH
Q 042593 182 YAKC--------------GCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKE 223 (352)
Q Consensus 182 ~~~~--------------g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~ 223 (352)
+.+. +.++++.+.++......| |...|+-+-..+.+.++.++
T Consensus 188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 7764 557888888887655444 67788877777777776444
No 193
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.61 E-value=0.0022 Score=54.64 Aligned_cols=181 Identities=8% Similarity=-0.087 Sum_probs=129.5
Q ss_pred cchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCC--hhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCC-H
Q 042593 40 PNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGF--LKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNR-S 116 (352)
Q Consensus 40 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~-~ 116 (352)
+++++.+++.+.... +-+..+|+.-..++.+.++ +++++.+++++.+.|+..|.+ |+.-.-.....|. +
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~A-------W~~R~~vl~~l~~~~ 161 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHC-------WDYRRFVAAQAAVAP 161 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHhCcCH
Confidence 577888888888765 5678889888888888884 899999999998755555554 7777777777787 6
Q ss_pred HHHHHHHHHhHhccCCCCChhhHHHHHHHHHhC--------------CChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 117 NEALALFRRMAACEYTEPSEITILAVLPAIWKN--------------GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 117 ~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
+++++.++++.. .. +-|...|+.....+.+. +.++++.+.+.......+. |...|+-+-..+
T Consensus 162 ~eel~~~~~~I~-~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~--d~SaW~Y~r~ll 237 (331)
T 3dss_A 162 AEELAFTDSLIT-RN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN--DQSAWFYHRWLL 237 (331)
T ss_dssp HHHHHHHHHHHH-HC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Confidence 899999999944 32 23555677666665554 4567888888888887654 888888766666
Q ss_pred Hhh-----------CChHHHHHHHHHhccCCCCHhhHHHHHH-----HHHcCCCHHHHHHHHHHHHh
Q 042593 183 AKC-----------GCIFSASKLFEDTSVDRKNLVSWTTIIS-----GFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 183 ~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~li~-----~~~~~~~~~~a~~~~~~m~~ 233 (352)
.+. +.++++++.++++....||. .|..+-. +....|..+++...+.++.+
T Consensus 238 ~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 238 GAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 655 45788999999887667764 3432221 22245666777777777765
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00023 Score=49.74 Aligned_cols=65 Identities=9% Similarity=-0.133 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC
Q 042593 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203 (352)
Q Consensus 137 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 203 (352)
..+..+...+.+.|++++|...+++..+.... +...+..+..++.+.|++++|.+.+++.....|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ--NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 34455555555666666666666665554332 455555666666666666666666666554444
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.53 E-value=0.0016 Score=60.21 Aligned_cols=173 Identities=8% Similarity=-0.094 Sum_probs=129.4
Q ss_pred cCCHHHHHHHHHHhHhccCCCCChh-hHHHHHHHHHhCCC----------hhhHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 042593 113 MNRSNEALALFRRMAACEYTEPSEI-TILAVLPAIWKNGE----------VRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181 (352)
Q Consensus 113 ~~~~~~a~~~~~~m~~~~~~~p~~~-t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 181 (352)
....++|++.++++.. ..|+.. .|+.--.++.+.|+ ++++...++.+.+.... +..+|+.-..+
T Consensus 42 ~~~~eeal~~~~~~l~---~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK--~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK--SYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH---HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Confidence 3345678999999844 335544 56666666666666 89999999999987655 88899988888
Q ss_pred HHhhC--ChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCC-CHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHH
Q 042593 182 YAKCG--CIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHG-MGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVE 257 (352)
Q Consensus 182 ~~~~g--~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~ 257 (352)
+.+.| +++++++.++++.+. +.|...|+.-...+.+.| .++++.+.++++.+.. |
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p------------------- 175 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--F------------------- 175 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--C-------------------
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--C-------------------
Confidence 88999 779999999998766 457888888877778888 8889999888887642 2
Q ss_pred hcCCCCChhhHHHHHHHHHHc--------------CChhHHHHHHhcCCCC-CCCchhhHHHHHHHHhcccccC
Q 042593 258 ECEVLPDIKHYGCLIDILERA--------------GRLEQAEEVASGIPSQ-ITNVVVWRTGFLRLLINSYFFS 316 (352)
Q Consensus 258 ~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~-~~~~~~~~~li~~~~~~g~~~~ 316 (352)
-|...|+.....+.+. +.++++.+.++..... +.|...|+.+--.+...++.++
T Consensus 176 -----~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 176 -----SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp -----CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred -----CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 2566666666665553 4567888888776655 6688899988777777777665
No 196
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.53 E-value=0.013 Score=53.10 Aligned_cols=192 Identities=10% Similarity=0.008 Sum_probs=127.1
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHH-HHHhccCCC-C------CchhHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDS-SKLFDELPE-R------NLVTWN 94 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a-~~~~~~m~~-~------~~~~~~ 94 (352)
+...|-..+..+.+.|+++.|.++++..... |.+...+. .|+...+.++. ..+.+.... . ......
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 285 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKEL 285 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC----------CHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhccchhhhhccccc
Confidence 5667777778888899999999999999987 44443332 23322222221 122221110 0 001111
Q ss_pred HHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHH-hCCChhhHHHHHHHHHhcCCCCCchh
Q 042593 95 VIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIW-KNGEVRNCQLIHGYGEKRGFNAFDIH 173 (352)
Q Consensus 95 ~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~ 173 (352)
..+ |-..+....+.++.+.|..+|++. +..+ .+...|......-. ..++.+.|..+++...+.-.. ++.
T Consensus 286 ~~l-----w~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~ 355 (493)
T 2uy1_A 286 DLL-----RINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STL 355 (493)
T ss_dssp HHH-----HHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHH
T ss_pred HHH-----HHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHH
Confidence 111 777777777788899999999999 5332 23334432222212 234799999999999886432 556
Q ss_pred hHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 174 VSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 174 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
.+...++...+.|+.+.|..+|+... .....|...+.-=...|+.+.+..++++..+
T Consensus 356 ~~~~yid~e~~~~~~~~aR~l~er~~---k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 356 LKEEFFLFLLRIGDEENARALFKRLE---KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHSC---CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67778888899999999999999983 3577888888877888999999999988765
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.52 E-value=0.0016 Score=48.81 Aligned_cols=105 Identities=18% Similarity=0.119 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
+......+.+.|++++|+..|++......-.|+.. + ....|.+...|..+..++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~-----------------a---------~~~~~~~a~a~~n~g~al 67 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE-----------------A---------FDHAGFDAFCHAGLAEAL 67 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS-----------------C---------CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh-----------------h---------hhhccchHHHHHHHHHHH
Confidence 55666778888999999999998855332222210 0 000000233566666666
Q ss_pred HhhCChHHHHHHHHHhccC-------CCC-HhhH----HHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 183 AKCGCIFSASKLFEDTSVD-------RKN-LVSW----TTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 183 ~~~g~~~~a~~~~~~~~~~-------~~~-~~~~----~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
.+.|++++|+..+++.... .|+ ...| ...-.++...|++++|+..|++..+
T Consensus 68 ~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 68 AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 6666666666666655444 453 4556 6666777777777777777777665
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.52 E-value=0.001 Score=49.86 Aligned_cols=86 Identities=14% Similarity=0.052 Sum_probs=61.0
Q ss_pred hhHHHHHHHHHhhCChHHHHHHHHHhccCCCC-------------HhhHHHHHHHHHcCCCHHHHHHHHHHHHhc-----
Q 042593 173 HVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN-------------LVSWTTIISGFAMHGMGKEAVENFERMQKV----- 234 (352)
Q Consensus 173 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----- 234 (352)
..+......+.+.|++++|.+.|++.....|+ ...|+.+-.++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34455566666777777777777765444333 338999999999999999999999998874
Q ss_pred CCCCCcc-hh-----h----------hHhHHHHHHHHHHh
Q 042593 235 GLKPNRS-WR-----I----------GEEGLKFFDKMVEE 258 (352)
Q Consensus 235 ~~~p~~~-~~-----~----------~~~a~~~~~~m~~~ 258 (352)
.+.|+.. .+ . .++|+..|++..+.
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 2256542 22 3 88999999887753
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.48 E-value=0.00071 Score=47.76 Aligned_cols=77 Identities=14% Similarity=0.009 Sum_probs=38.1
Q ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 155 CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 155 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
+...++...+.... +...+..+..+|...|++++|.+.|++.....| +...|..+..+|...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTD--NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444443222 444555555555555555555555555433322 344555555555555555555555555443
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.45 E-value=0.0002 Score=50.69 Aligned_cols=75 Identities=11% Similarity=0.099 Sum_probs=50.0
Q ss_pred chHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CC-chhHHHHHHHHHhHHHHHHHHHhcCCHH
Q 042593 41 NLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RN-LVTWNVIITGLVKWTGIIDGYSRMNRSN 117 (352)
Q Consensus 41 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~-~~~~~~~i~~~~~~~~li~~~~~~~~~~ 117 (352)
+.+++.++...+.. +.+...+..+..+|...|++++|+..|++..+ |+ ... |..+..++...|+++
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~----------~~~la~~~~~~g~~~ 70 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA----------WKWLGKTLQGQGDRA 70 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH----------HHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHH----------HHHHHHHHHHcCCHH
Confidence 34566666666544 34566777777777777777777777777654 32 222 666777777777777
Q ss_pred HHHHHHHHh
Q 042593 118 EALALFRRM 126 (352)
Q Consensus 118 ~a~~~~~~m 126 (352)
+|...|++.
T Consensus 71 ~A~~~~~~a 79 (115)
T 2kat_A 71 GARQAWESG 79 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777776
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.25 E-value=0.0018 Score=43.08 Aligned_cols=76 Identities=13% Similarity=-0.004 Sum_probs=42.3
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHH
Q 042593 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGF 215 (352)
Q Consensus 138 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~ 215 (352)
.+..+...+...|++++|...+++..+.... +...+..+..++.+.|++++|.+.|++.....| +...+..+..++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4555555566666666666666666555322 455556666666666666666666665543333 344444444443
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.25 E-value=0.0076 Score=44.17 Aligned_cols=113 Identities=11% Similarity=-0.033 Sum_probs=91.2
Q ss_pred cCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHh----hCCh
Q 042593 113 MNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK----CGCI 188 (352)
Q Consensus 113 ~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 188 (352)
.++.++|++.|++. ...| .|+.. +-..|...+.+++|...++...+.| +...+..|-..|.. .++.
T Consensus 8 ~~d~~~A~~~~~~a-a~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 8 KKDLKKAIQYYVKA-CELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHH-HHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCH
T ss_pred ccCHHHHHHHHHHH-HcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHcCCCCCccH
Confidence 35788999999999 5555 33333 6667777788899999999998875 66778888888888 8899
Q ss_pred HHHHHHHHHhccCCCCHhhHHHHHHHHHc----CCCHHHHHHHHHHHHhcCC
Q 042593 189 FSASKLFEDTSVDRKNLVSWTTIISGFAM----HGMGKEAVENFERMQKVGL 236 (352)
Q Consensus 189 ~~a~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~ 236 (352)
++|.+.|++..+. -++..+..|-..|.. .++.++|...|++..+.|.
T Consensus 78 ~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 78 RKAAQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999999987543 567778888888888 8899999999999988763
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.17 E-value=0.0018 Score=44.46 Aligned_cols=61 Identities=10% Similarity=-0.018 Sum_probs=42.1
Q ss_pred hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHh
Q 042593 136 EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198 (352)
Q Consensus 136 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 198 (352)
...+..+..++.+.|++++|...++...+.... +...|..+..+|.+.|++++|.+.|++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD--YVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445666677777777777777777777766543 5566777777777777777777777665
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.07 E-value=0.0077 Score=39.82 Aligned_cols=80 Identities=14% Similarity=0.186 Sum_probs=64.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTY 182 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 182 (352)
|..+...+...|++++|...|++..... +.+...+..+..++.+.|++++|...+++..+.... +...+..+..++
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~ 87 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CHHHHHHHHHHH
Confidence 7778888999999999999999984432 234568889999999999999999999999887543 677777777776
Q ss_pred HhhC
Q 042593 183 AKCG 186 (352)
Q Consensus 183 ~~~g 186 (352)
.+.|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 6543
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.05 E-value=0.0017 Score=44.62 Aligned_cols=63 Identities=17% Similarity=0.156 Sum_probs=56.4
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCC
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELP 86 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 86 (352)
+...+..+...+.+.|++++|...|+...+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 67788899999999999999999999999876 5567889999999999999999999987754
No 206
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.00 E-value=0.0011 Score=58.92 Aligned_cols=91 Identities=8% Similarity=-0.115 Sum_probs=68.5
Q ss_pred hhCChHHHHHHHHHhccC--------CCC-HhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHH
Q 042593 184 KCGCIFSASKLFEDTSVD--------RKN-LVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDK 254 (352)
Q Consensus 184 ~~g~~~~a~~~~~~~~~~--------~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~ 254 (352)
..|++++|+.++++.... .|+ ..+++.|..+|...|++++|+.++++..+- +++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i-----------------~~~ 372 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP-----------------YSK 372 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------HHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH-----------------HHH
Confidence 357889999998875331 343 477999999999999999999999997652 222
Q ss_pred HHHhcCCCC-ChhhHHHHHHHHHHcCChhHHHHHHhcCCC
Q 042593 255 MVEECEVLP-DIKHYGCLIDILERAGRLEQAEEVASGIPS 293 (352)
Q Consensus 255 m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 293 (352)
... .-.| ...+++.|...|...|++++|+.++++...
T Consensus 373 ~lG--~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 373 HYP--VYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HSC--SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcC--CCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 111 1223 346799999999999999999999887644
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.98 E-value=0.002 Score=48.24 Aligned_cols=44 Identities=14% Similarity=0.022 Sum_probs=20.0
Q ss_pred HHHHHHHHhccCCC-CHhhHHHHHHHHHcCC-----------CHHHHHHHHHHHHh
Q 042593 190 SASKLFEDTSVDRK-NLVSWTTIISGFAMHG-----------MGKEAVENFERMQK 233 (352)
Q Consensus 190 ~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~-----------~~~~a~~~~~~m~~ 233 (352)
+|+..|++.....| +...|..+-.+|...| ++++|...|++.++
T Consensus 64 eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 64 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 44444444433332 3344444444444432 45555555555444
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.95 E-value=0.0016 Score=57.96 Aligned_cols=86 Identities=7% Similarity=-0.038 Sum_probs=68.9
Q ss_pred hCCChhhHHHHHHHHHhc-----CCC-CCchhhHHHHHHHHHhhCChHHHHHHHHHhccC--------CCCH-hhHHHHH
Q 042593 148 KNGEVRNCQLIHGYGEKR-----GFN-AFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD--------RKNL-VSWTTII 212 (352)
Q Consensus 148 ~~~~~~~a~~~~~~~~~~-----~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~~~-~~~~~li 212 (352)
..|++++|+.++++..+. |.. |....+++.|..+|...|++++|+.++++.... .|++ .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999887653 222 113578899999999999999999999886432 4543 6799999
Q ss_pred HHHHcCCCHHHHHHHHHHHHh
Q 042593 213 SGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 213 ~~~~~~~~~~~a~~~~~~m~~ 233 (352)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998765
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.94 E-value=0.0017 Score=47.75 Aligned_cols=112 Identities=8% Similarity=-0.111 Sum_probs=79.8
Q ss_pred cCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC-CCchhHHHHHHHHHhHHHHHHHHHh---
Q 042593 37 LSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE-RNLVTWNVIITGLVKWTGIIDGYSR--- 112 (352)
Q Consensus 37 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~i~~~~~~~~li~~~~~--- 112 (352)
.+++++|.+.|+...+.| .|+.. |...|...+.+++|.+.|++..+ .+... ++.|-..|..
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a----------~~~Lg~~y~~G~g 72 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNG----------CRFLGDFYENGKY 72 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHH----------HHHHHHHHHHCSS
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHH----------HHHHHHHHHcCCC
Confidence 346778888888888887 33333 66677777778888888887654 34444 6666666766
Q ss_pred -cCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHh----CCChhhHHHHHHHHHhcCC
Q 042593 113 -MNRSNEALALFRRMAACEYTEPSEITILAVLPAIWK----NGEVRNCQLIHGYGEKRGF 167 (352)
Q Consensus 113 -~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~ 167 (352)
.++.++|...|++. ...| +...+..+-..|.. .++.++|...++...+.|.
T Consensus 73 ~~~d~~~A~~~~~~A-a~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 73 VKKDLRKAAQYYSKA-CGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHH-HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CCccHHHHHHHHHHH-HcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77888888888888 4333 45566777777777 7788888888888777764
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.91 E-value=0.0021 Score=57.18 Aligned_cols=97 Identities=10% Similarity=-0.065 Sum_probs=73.4
Q ss_pred HHHHHHhhCChHHHHHHHHHhccC--------CC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhH
Q 042593 178 LIDTYAKCGCIFSASKLFEDTSVD--------RK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEG 248 (352)
Q Consensus 178 li~~~~~~g~~~~a~~~~~~~~~~--------~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a 248 (352)
.+.-+.+.|++++|+..+++.... .| ...+++.|..+|...|++++|+.++++.++-
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i-------------- 358 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP-------------- 358 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--------------
Confidence 355566889999999999886543 22 2477999999999999999999999987752
Q ss_pred HHHHHHHHHhcCCCC-ChhhHHHHHHHHHHcCChhHHHHHHhcCCC
Q 042593 249 LKFFDKMVEECEVLP-DIKHYGCLIDILERAGRLEQAEEVASGIPS 293 (352)
Q Consensus 249 ~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 293 (352)
+++... ...| ...+++.|...|...|++++|+.++++...
T Consensus 359 ---~~~~lg--~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 359 ---YRIFFP--GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp ---HHHHSC--SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---HHHHcC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 222111 2223 356789999999999999999998887643
No 211
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.90 E-value=0.024 Score=54.66 Aligned_cols=129 Identities=10% Similarity=-0.018 Sum_probs=86.2
Q ss_pred HHHHhcCChhHHHH-HhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHH
Q 042593 67 DMYVSLGFLKDSSK-LFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145 (352)
Q Consensus 67 ~~~~~~g~~~~a~~-~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~ 145 (352)
......+++++|.+ ++..++ +... ...++..+.+.|.++.|+++.++- . .-...
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~--~~~~----------~~~~~~~l~~~~~~~~a~~~~~~~-~------------~~f~~ 661 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE--GKDS----------LTKIARFLEGQEYYEEALNISPDQ-D------------QKFEL 661 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC--CHHH----------HHHHHHHHHHTTCHHHHHHHCCCH-H------------HHHHH
T ss_pred hHHHHhCCHHHHHHHHHhcCC--chHH----------HHHHHHHHHhCCChHHheecCCCc-c------------hheeh
Confidence 33446788888888 665543 1112 455666778888888888765322 1 11233
Q ss_pred HHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHH
Q 042593 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAV 225 (352)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 225 (352)
....|+++.|.++.+.+ . +...|..+.+.+.+.|+++.|+++|..+.. |..+...+...|+.+...
T Consensus 662 ~l~~~~~~~A~~~~~~~------~-~~~~W~~la~~al~~~~~~~A~~~y~~~~d-------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------S-AEMKWRALGDASLQRFNFKLAIEAFTNAHD-------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-------HHHHHHHHHHTTCHHHHH
T ss_pred hhhcCCHHHHHHHHHhh------C-cHhHHHHHHHHHHHcCCHHHHHHHHHHccC-------hhhhHHHHHHcCCHHHHH
Confidence 45678999998886543 2 678899999999999999999999998742 555555566677776666
Q ss_pred HHHHHHHhc
Q 042593 226 ENFERMQKV 234 (352)
Q Consensus 226 ~~~~~m~~~ 234 (352)
.+.+.....
T Consensus 728 ~~~~~a~~~ 736 (814)
T 3mkq_A 728 TLAKDAETT 736 (814)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 555554443
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.90 E-value=0.0042 Score=55.18 Aligned_cols=93 Identities=12% Similarity=0.023 Sum_probs=73.6
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhcC---CCC---CchhhHHHHHHHHHhhCChHHHHHHHHHhccC--------CCC-H
Q 042593 141 AVLPAIWKNGEVRNCQLIHGYGEKRG---FNA---FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD--------RKN-L 205 (352)
Q Consensus 141 ~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--------~~~-~ 205 (352)
..+..+.+.|++++|...+++..+.. +.+ ....+++.+..+|...|++++|+.++++.... .|+ .
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 34555678899999999999887542 111 13568899999999999999999999876432 444 4
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 206 VSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 206 ~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
.+++.|...|...|++++|..++++..+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6799999999999999999999998765
No 213
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.87 E-value=0.0027 Score=47.50 Aligned_cols=114 Identities=6% Similarity=-0.037 Sum_probs=84.9
Q ss_pred HhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCCh----------hhHHHHHHHHHhcCCCCCchhhHHHHHH
Q 042593 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEV----------RNCQLIHGYGEKRGFNAFDIHVSNCLID 180 (352)
Q Consensus 111 ~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~li~ 180 (352)
.+.+.+++|.+.+++..... +-+...|..+..++...+++ ++|...+++..+.... ....|..+..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~--~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK--KDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC--cHHHHHHHHH
Confidence 45567889999999884433 23566788888888887765 5999999999988655 7889999999
Q ss_pred HHHhhC-----------ChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 181 TYAKCG-----------CIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 181 ~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
+|...| ++++|.+.|++.....|+-..|...+.. .++|.+++-++...
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~------~~ka~el~~~~~~~ 147 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM------TAKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH------HHTHHHHHHHHHHS
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH------HHhCHhccCccccc
Confidence 998875 8999999999988778887666555542 34455555555444
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.69 E-value=0.053 Score=52.18 Aligned_cols=157 Identities=8% Similarity=0.001 Sum_probs=84.3
Q ss_pred HHHHhcCCcchHHH-HHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHH
Q 042593 32 RTCVTLSYPNLGTQ-LHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGY 110 (352)
Q Consensus 32 ~~~~~~g~~~~a~~-~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~ 110 (352)
......+++++|.+ ++.. ++ +......++..+.+.|..++|.++.+.- .. - ....
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~---~~-~--------------f~~~ 662 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQ---DQ-K--------------FELA 662 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCH---HH-H--------------HHHH
T ss_pred hHHHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCc---ch-h--------------eehh
Confidence 44456777777766 4411 11 0112256666777777777777665421 10 0 1223
Q ss_pred HhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHH
Q 042593 111 SRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS 190 (352)
Q Consensus 111 ~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 190 (352)
...|+++.|+++.+.+ .+...|..+...+.+.++++.|++.|..+.. |..+...|...|+.+.
T Consensus 663 l~~~~~~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~ 725 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEG 725 (814)
T ss_dssp HHHTCHHHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHH
T ss_pred hhcCCHHHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHH
Confidence 4567777777776555 3456777777777777777777777775532 2344444444555554
Q ss_pred HHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 191 ASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 191 a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
..++-+...... -++....+|.+.|++++|.+++.++.+
T Consensus 726 ~~~~~~~a~~~~----~~~~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 726 LVTLAKDAETTG----KFNLAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp HHHHHHHHHHTT----CHHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcC----chHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 444433322111 123333344555666666666555443
No 215
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.54 E-value=0.17 Score=38.43 Aligned_cols=24 Identities=13% Similarity=0.295 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHh
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRM 126 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m 126 (352)
|..|.......|+++-|.+.|.+.
T Consensus 37 Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 37 WERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHh
Confidence 555555555555555555555554
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.42 E-value=0.066 Score=45.97 Aligned_cols=140 Identities=8% Similarity=-0.094 Sum_probs=93.1
Q ss_pred CCChhhHHHHHHHHHh--CC---ChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHh---hC-----Ch---HHHHHHHH
Q 042593 133 EPSEITILAVLPAIWK--NG---EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK---CG-----CI---FSASKLFE 196 (352)
Q Consensus 133 ~p~~~t~~~ll~~~~~--~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g-----~~---~~a~~~~~ 196 (352)
+.+...|...+++... .+ +..+|..+|++..+..+. ....|..+.-+|.- .+ .. ..+.+-..
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~--~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE--FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 4566778887777543 22 347788999998887554 55556554444431 11 11 11222111
Q ss_pred HhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 042593 197 DTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILE 276 (352)
Q Consensus 197 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 276 (352)
.+...+.+..+|..+...+...|++++|...+++.... + |+...|..+...+.
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-------------------------n--~s~~a~~llG~~~~ 321 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-------------------------E--MSWLNYVLLGKVYE 321 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------------------C--CCHHHHHHHHHHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-------------------------C--CCHHHHHHHHHHHH
Confidence 22222567888888877777789999999999998875 2 56677778888889
Q ss_pred HcCChhHHHHHHhcCCCCCCCchhh
Q 042593 277 RAGRLEQAEEVASGIPSQITNVVVW 301 (352)
Q Consensus 277 ~~g~~~~A~~~~~~m~~~~~~~~~~ 301 (352)
-.|+.++|.+.+++.....|...+|
T Consensus 322 ~~G~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 322 MKGMNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp HTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred HCCCHHHHHHHHHHHHhcCCCcChH
Confidence 9999999999998776555555543
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.36 E-value=0.0036 Score=42.50 Aligned_cols=50 Identities=12% Similarity=0.020 Sum_probs=20.6
Q ss_pred HhCCChhhHHHHHHHHHhcCCCCCchh-hHHHHHHHHHhhCChHHHHHHHHHh
Q 042593 147 WKNGEVRNCQLIHGYGEKRGFNAFDIH-VSNCLIDTYAKCGCIFSASKLFEDT 198 (352)
Q Consensus 147 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~ 198 (352)
.+.|++++|...++...+.... +.. .+..+..+|...|++++|.+.|++.
T Consensus 11 ~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 11 INQGDIENALQALEEFLQTEPV--GKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHTCHHHHHHHHHHHHHHCSS--THHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344444444444444433221 233 3444444444444444444444443
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.27 E-value=0.026 Score=48.48 Aligned_cols=148 Identities=10% Similarity=-0.071 Sum_probs=79.5
Q ss_pred CCCCchhhHHHHHHHHHh--cC---ChhHHHHHhccCCC--CCc-hhHHHHHHHHHhHHHHHHHHHhcCCHHHHHH---H
Q 042593 54 GFQSHVYVNTALGDMYVS--LG---FLKDSSKLFDELPE--RNL-VTWNVIITGLVKWTGIIDGYSRMNRSNEALA---L 122 (352)
Q Consensus 54 ~~~~~~~~~~~li~~~~~--~g---~~~~a~~~~~~m~~--~~~-~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~---~ 122 (352)
+.+.+...|...+.+... .+ +..+|..+|++..+ |+- ..+..+.-+ |. +...+. ......... -
T Consensus 189 ~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a---~~-~~~~~~-~~~~~~~~~l~~a 263 (372)
T 3ly7_A 189 ILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALV---DI-VRHSQH-PLDEKQLAALNTE 263 (372)
T ss_dssp HSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH---HH-HHHHHS-CCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HH-HHhccC-CCchhhHHHHHHH
Confidence 346677888887766553 23 35788999999875 543 222111100 11 111111 001111111 1
Q ss_pred HHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCC
Q 042593 123 FRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDR 202 (352)
Q Consensus 123 ~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 202 (352)
+.........+.+..+|..+...+...|++++|...+++....+ | +...|..+...+.-.|+.++|.+.|++.....
T Consensus 264 ~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 264 IDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--M-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 11110111223455566666655666677777777777777765 4 55666666777777777777777777665556
Q ss_pred CCHhhHH
Q 042593 203 KNLVSWT 209 (352)
Q Consensus 203 ~~~~~~~ 209 (352)
|...+|.
T Consensus 341 P~~~t~~ 347 (372)
T 3ly7_A 341 PGANTLY 347 (372)
T ss_dssp CSHHHHH
T ss_pred CCcChHH
Confidence 6665544
No 219
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.17 E-value=0.045 Score=36.83 Aligned_cols=68 Identities=4% Similarity=-0.119 Sum_probs=37.0
Q ss_pred ChhhHHHHHHHHHhCCC---hhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCC
Q 042593 135 SEITILAVLPAIWKNGE---VRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204 (352)
Q Consensus 135 ~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 204 (352)
|...+..+..++...++ .++|..++++..+.... +......+...+.+.|++++|...|+.+....|+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~--~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY--NEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 33444455555443333 45666666666655433 5555555666666666666666666665554443
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.16 E-value=0.22 Score=35.81 Aligned_cols=137 Identities=10% Similarity=0.015 Sum_probs=94.1
Q ss_pred hcCChhHHHHHhccCCCC-CchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhC
Q 042593 71 SLGFLKDSSKLFDELPER-NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKN 149 (352)
Q Consensus 71 ~~g~~~~a~~~~~~m~~~-~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~ 149 (352)
-.|.+++..++..+..++ +..- ||.+|-.....-+-+-..++++.+ .. -.|.. ..
T Consensus 19 ldG~v~qGveii~k~~~ssni~E----------~NW~ICNiiD~a~C~y~v~vLd~I-Gk---iFDis----------~C 74 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSSTKSE----------YNWFICNLLESIDCRYMFQVLDKI-GS---YFDLD----------KC 74 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHH----------HTHHHHHHHHHCCHHHHHHHHHHH-GG---GSCGG----------GC
T ss_pred HhhhHHHHHHHHHHHcCCCCccc----------cceeeeecchhhchhHHHHHHHHH-hh---hcCcH----------hh
Confidence 457888888888877653 3344 555555555566666666666666 21 22322 23
Q ss_pred CChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHh-ccCCCCHhhHHHHHHHHHcCCCHHHHHHHH
Q 042593 150 GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT-SVDRKNLVSWTTIISGFAMHGMGKEAVENF 228 (352)
Q Consensus 150 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 228 (352)
|++..+...+-.+ |. +....+..++.+...|+-+.-.++..++ ...+|++...-.+..+|.+.|+..+|.+++
T Consensus 75 ~NlKrVi~C~~~~---n~---~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 75 QNLKSVVECGVIN---NT---LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp SCTHHHHHHHHHT---TC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcHHHHHHHHHHh---cc---hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 4443333333322 21 4566778889999999999999999995 444789999999999999999999999999
Q ss_pred HHHHhcCCC
Q 042593 229 ERMQKVGLK 237 (352)
Q Consensus 229 ~~m~~~~~~ 237 (352)
.+.-+.|++
T Consensus 149 ~~AC~kG~k 157 (172)
T 1wy6_A 149 IEACKKGEK 157 (172)
T ss_dssp HHHHHTTCH
T ss_pred HHHHHhhhH
Confidence 999888764
No 221
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.06 E-value=1e-05 Score=70.96 Aligned_cols=214 Identities=13% Similarity=0.061 Sum_probs=147.9
Q ss_pred CChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCCh
Q 042593 73 GFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEV 152 (352)
Q Consensus 73 g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~ 152 (352)
+++++|.+.-++..+|.+ |+.|.++..+.++..+|++-|-+. -|...|..++.++.+.|.+
T Consensus 39 ~~ldRa~eyA~~~n~p~V------------Ws~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~ 99 (624)
T 3lvg_A 39 GNLDRAYEFAERCNEPAV------------WSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNW 99 (624)
T ss_dssp CCSTTTTTSSSSCCCCCC------------SSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCC
T ss_pred cccHHHHHHHHHhCCccH------------HHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCH
Confidence 456666666666655554 888889999998888877655444 3556788999999999999
Q ss_pred hhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042593 153 RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQ 232 (352)
Q Consensus 153 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 232 (352)
++-...+....+..- ++.+=+.|+-+|++.+++.+-++++. .||+.-...+-+-|...|.++.|.-+|..+-
T Consensus 100 edLv~yL~MaRk~~k---e~~IDteLi~ayAk~~rL~elEefl~-----~~N~A~iq~VGDrcf~e~lYeAAKilys~is 171 (624)
T 3lvg_A 100 EELVKYLQMARKKAR---ESYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS 171 (624)
T ss_dssp TTHHHHHHTTSTTCC---STTTTHHHHHHHHTSCSSSTTTSTTS-----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC
T ss_pred HHHHHHHHHHHHHhc---ccccHHHHHHHHHhhCcHHHHHHHHc-----CCCcccHHHHHHHHHHccCHHHHHHHHHhCc
Confidence 999999998877643 44556699999999999766444332 6777777888888888898888888877654
Q ss_pred hcCCCCCcchhh----hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHH
Q 042593 233 KVGLKPNRSWRI----GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRL 308 (352)
Q Consensus 233 ~~~~~p~~~~~~----~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~ 308 (352)
.-. -=..|+. +..|.+. . .-.-++.||-.+-.+|...+.+..|...--.+.- ...-...++..|
T Consensus 172 N~a--kLAstLV~L~~yq~AVda---A----rKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---hadeL~elv~~Y 239 (624)
T 3lvg_A 172 NFG--RLASTLVHLGEYQAAVDG---A----RKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HADELEELINYY 239 (624)
T ss_dssp CCT--TTSSSSSSCSGGGSSTTT---T----TTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSSCCSGGGSSS
T ss_pred cHH--HHHHHHHHHHHHHHHHHH---H----HhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHHHHHHHHHHH
Confidence 321 0011111 1111110 0 1124778999999999999998877544222211 122234577888
Q ss_pred HhcccccCcccccccch
Q 042593 309 LINSYFFSPITLNSQRL 325 (352)
Q Consensus 309 ~~~g~~~~a~~~~~~~~ 325 (352)
-..|.+++-+++++..+
T Consensus 240 E~~G~f~ELIsLlEagl 256 (624)
T 3lvg_A 240 QDRGYFEELITMLEAAL 256 (624)
T ss_dssp STTCCCTTSTTTHHHHT
T ss_pred HhCCCHHHHHHHHHHHh
Confidence 99999999999988774
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.86 E-value=0.02 Score=38.62 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=49.7
Q ss_pred HHHHHHhhCChHHHHHHHHHhccCCC-CHh-hHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 178 LIDTYAKCGCIFSASKLFEDTSVDRK-NLV-SWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 178 li~~~~~~g~~~~a~~~~~~~~~~~~-~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
....+.+.|++++|.+.|++.....| +.. .+..+..+|...|++++|...|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 45678899999999999999876655 567 8899999999999999999999998875
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.46 E-value=0.085 Score=43.54 Aligned_cols=86 Identities=15% Similarity=0.056 Sum_probs=69.3
Q ss_pred hhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhh-----CChHHHHHHHHHhccCCC--CHhhHHHHHHHHHcC-CCHHH
Q 042593 152 VRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC-----GCIFSASKLFEDTSVDRK--NLVSWTTIISGFAMH-GMGKE 223 (352)
Q Consensus 152 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~--~~~~~~~li~~~~~~-~~~~~ 223 (352)
...|...+++..+......+...|..+...|.+. |+.++|.+.|++.....| +..++....+.+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 4567777777777754432467899999999994 999999999999877777 378888888888885 99999
Q ss_pred HHHHHHHHHhcCCC
Q 042593 224 AVENFERMQKVGLK 237 (352)
Q Consensus 224 a~~~~~~m~~~~~~ 237 (352)
+.+.+++.+.....
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 99999999987555
No 224
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.45 E-value=0.46 Score=34.16 Aligned_cols=140 Identities=13% Similarity=0.050 Sum_probs=79.6
Q ss_pred cccHHHHHHHH--HhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC-CCchh---HHHHH
Q 042593 24 SFTYSFLIRTC--VTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE-RNLVT---WNVII 97 (352)
Q Consensus 24 ~~~~~~ll~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~~---~~~~i 97 (352)
..+...++.+- .-.|.+++..++........ +..-||-+|.-....-+-+-..+.++.+-+ -|... .-.++
T Consensus 5 ~el~kkLmeAK~~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi 81 (172)
T 1wy6_A 5 SEIIRKLMDAKKFLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVV 81 (172)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHH
Confidence 34455555443 34688899999988877654 344455555444444444444444443322 01100 00011
Q ss_pred HHHH-------hHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCC
Q 042593 98 TGLV-------KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFN 168 (352)
Q Consensus 98 ~~~~-------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 168 (352)
.+++ ..+..++.....|+-+...+++.++.. +.+|+......+..||.+.|+..++.+++.+..+.|+.
T Consensus 82 ~C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 1111 155666777777777777777777423 34566777777777777888877777777777777764
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.42 E-value=0.11 Score=34.91 Aligned_cols=65 Identities=12% Similarity=-0.039 Sum_probs=54.8
Q ss_pred chhhHHHHHHHHHhhCC---hHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcC
Q 042593 171 DIHVSNCLIDTYAKCGC---IFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQKVG 235 (352)
Q Consensus 171 ~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 235 (352)
++..+..+..++...++ .++|..++++.....| ++.....+...+.+.|++++|...|+++.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 77788888888876555 7999999999876655 67888888889999999999999999999864
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.28 E-value=0.072 Score=39.38 Aligned_cols=69 Identities=10% Similarity=-0.073 Sum_probs=29.5
Q ss_pred CChhhHHHHHHHHHhCC---ChhhHHHHHHHHHhcC-CCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC
Q 042593 134 PSEITILAVLPAIWKNG---EVRNCQLIHGYGEKRG-FNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203 (352)
Q Consensus 134 p~~~t~~~ll~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 203 (352)
++..+...+.-++++.+ +.+++..+++...+.. ... ....+-.+.-+|.+.|++++|.+.++.+.+..|
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~-~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEE-QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 102 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHH-HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccc-hHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 34444444444444444 3344555555444443 101 122222333344455555555555554443333
No 227
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.10 E-value=0.0057 Score=54.10 Aligned_cols=236 Identities=9% Similarity=0.002 Sum_probs=146.1
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh
Q 042593 58 HVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137 (352)
Q Consensus 58 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 137 (352)
.+..|+.|..++.+.+++.+|++-|-+.. |+.. |..++.+..+.|.+++-...+... ++....|..
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~--Dps~----------y~eVi~~A~~~~~~edLv~yL~Ma-Rk~~ke~~I- 118 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD--DPSS----------YMEVVQAANTSGNWEELVKYLQMA-RKKARESYV- 118 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCCS--CCCS----------SSHHHHHTTTSSCCTTHHHHHHTT-STTCCSTTT-
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhCC--ChHH----------HHHHHHHHHhCCCHHHHHHHHHHH-HHHhccccc-
Confidence 45678888888888888888887776554 4444 777888888888888888776665 544434433
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC----------------
Q 042593 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD---------------- 201 (352)
Q Consensus 138 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---------------- 201 (352)
=+.++-+|++.+++.+.++++. .| +..-...+.+=|...|.++.|.-+|..+...
T Consensus 119 -DteLi~ayAk~~rL~elEefl~-------~~-N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 119 -ETELIFALAKTNRLAELEEFIN-------GP-NNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp -THHHHHHHHTSCSSSTTTSTTS-------CC-SSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSS
T ss_pred -HHHHHHHHHhhCcHHHHHHHHc-------CC-CcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence 3478888888888777655443 23 4444456666677777777777666654321
Q ss_pred ------CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcch-hh-----hHhHHHHHHHHHHhcCCCCChhhHH
Q 042593 202 ------RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSW-RI-----GEEGLKFFDKMVEECEVLPDIKHYG 269 (352)
Q Consensus 202 ------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~-----~~~a~~~~~~m~~~~~~~p~~~~~~ 269 (352)
..++.||--+-.+|...+.+.-|.-.--.++-..-..+... +. +++.+.+++.-.. --....-.|+
T Consensus 190 VdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglg--lErAHmGmFT 267 (624)
T 3lvg_A 190 VDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFT 267 (624)
T ss_dssp TTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTT--STTCCHHHHH
T ss_pred HHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhC--CCchhHHHHH
Confidence 24678899999999999888877666555553322221111 11 5555555554331 1123555667
Q ss_pred HHHHHHHHcCChhHHHHHHhcCCCC---------CCCchhhHHHHHHHHhcccccCccc
Q 042593 270 CLIDILERAGRLEQAEEVASGIPSQ---------ITNVVVWRTGFLRLLINSYFFSPIT 319 (352)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~m~~~---------~~~~~~~~~li~~~~~~g~~~~a~~ 319 (352)
-|.-.|+|- +.++..+-++..-.+ -.....|.-++--|..-.+++.|..
T Consensus 268 ELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 268 ELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 776666665 344444444433222 1234567777777777777665543
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.07 E-value=0.11 Score=35.68 Aligned_cols=66 Identities=9% Similarity=-0.055 Sum_probs=33.4
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhcC-----CCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC
Q 042593 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRG-----FNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK 203 (352)
Q Consensus 138 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 203 (352)
-+..+...+.+.|+++.|...++...+.- ..+....++..+..+|.+.|+++.|...+++.....|
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 34445555555555555555555544321 0111445555666666666666666666665543333
No 229
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.06 E-value=0.077 Score=39.22 Aligned_cols=85 Identities=9% Similarity=-0.041 Sum_probs=66.4
Q ss_pred ChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhC---ChHHHHHHHHHhccCC-C--CHhhHHHHHHHHHcCCCHHHH
Q 042593 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCG---CIFSASKLFEDTSVDR-K--NLVSWTTIISGFAMHGMGKEA 224 (352)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~-~--~~~~~~~li~~~~~~~~~~~a 224 (352)
.+..+++-|.+..+.|. + +..+.-.+..++++++ +.+++..+|++..+.. | +...+-.|.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~~-~-~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-V-SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-C-CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccCC-C-cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHH
Confidence 44566677777666665 3 7777778888999988 6779999999887665 5 356666777788999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 042593 225 VENFERMQKVGLKPN 239 (352)
Q Consensus 225 ~~~~~~m~~~~~~p~ 239 (352)
.+.++.+.+. .|+
T Consensus 91 ~~y~~~lL~i--eP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHHHHH--CTT
T ss_pred HHHHHHHHhc--CCC
Confidence 9999999984 454
No 230
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.04 E-value=0.064 Score=44.26 Aligned_cols=141 Identities=11% Similarity=-0.017 Sum_probs=92.6
Q ss_pred cCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHH-HHHhc--C------CHHHHHHHHHHhHhccCCCCC---hhhH
Q 042593 72 LGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIID-GYSRM--N------RSNEALALFRRMAACEYTEPS---EITI 139 (352)
Q Consensus 72 ~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~-~~~~~--~------~~~~a~~~~~~m~~~~~~~p~---~~t~ 139 (352)
.++..+-.+.+.+....++.. ++ |..++. ++... | ....|...+++... +.|+ ...|
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~---L~-----W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle---LDP~~~~GsA~ 202 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGT---LY-----WVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD---LWPSYQEGAVW 202 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHH---HH-----HHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH---HCTTHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHH---HH-----HHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH---hCCCcccCHHH
Confidence 344455556666665433322 22 555554 33332 3 24566666666634 4566 4578
Q ss_pred HHHHHHHHhC-----CChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhh-CChHHHHHHHHHhccCC----CCHhhHH
Q 042593 140 LAVLPAIWKN-----GEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKC-GCIFSASKLFEDTSVDR----KNLVSWT 209 (352)
Q Consensus 140 ~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~----~~~~~~~ 209 (352)
..+...|.+. |+.++|...|++..+.+..- +..++....+.+++. |+.+.+.+.+++..... |+....|
T Consensus 203 ~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~-~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 203 NVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH-DPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT-CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8888889885 99999999999999987754 577888889999985 99999999999987654 4444444
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHH
Q 042593 210 TIISGFAMHGMGKEAVENFERMQ 232 (352)
Q Consensus 210 ~li~~~~~~~~~~~a~~~~~~m~ 232 (352)
.+- -++|..+++++.
T Consensus 282 ~~~--------q~eA~~LL~~~~ 296 (301)
T 3u64_A 282 ILS--------QKRARWLKAHVQ 296 (301)
T ss_dssp HHH--------HHHHHHHHHTHH
T ss_pred HHH--------HHHHHHHHHHhH
Confidence 332 345555555443
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.51 E-value=1.1 Score=33.86 Aligned_cols=101 Identities=14% Similarity=0.099 Sum_probs=64.0
Q ss_pred HHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCCh
Q 042593 109 GYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188 (352)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 188 (352)
.....|+++.|.++.+++ -+...|..+.....+.|+++-|++.|+.... +..+.-.|...|+.
T Consensus 14 LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCH
T ss_pred HHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCH
Confidence 345678888888887776 3566888888888888888888888875432 34555566666666
Q ss_pred HHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 042593 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230 (352)
Q Consensus 189 ~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 230 (352)
+...++-+...... -++....++...|+++++.+++.+
T Consensus 77 e~L~kla~iA~~~g----~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE----DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHHTT----CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc----cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66554443322111 134444445555666666666543
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.29 E-value=0.14 Score=35.09 Aligned_cols=69 Identities=14% Similarity=-0.112 Sum_probs=57.6
Q ss_pred CCcccHHHHHHHHHhcCCcchHHHHHHHHHHhC------CCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCc
Q 042593 22 FDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVG------FQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNL 90 (352)
Q Consensus 22 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~ 90 (352)
++...+..+...+.+.|++..|...++...+.- -.+....+..|..++.+.|+++.|...+++..+ |+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 477778899999999999999999999887642 134567889999999999999999999998764 543
No 233
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.14 E-value=4.5 Score=40.73 Aligned_cols=149 Identities=9% Similarity=0.016 Sum_probs=95.8
Q ss_pred HHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC---------
Q 042593 64 ALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP--------- 134 (352)
Q Consensus 64 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p--------- 134 (352)
.++..+.+.+..+-+.++..-..+ +... --.+..++...|++++|.+.|.+. .. |+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~----------~yl~g~~~L~~ge~~~A~~~F~ka-a~-~~~~~~~l~~~~~ 883 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIA----------VYLKALIYLKSKEAVKAVRCFKTT-SL-VLYSHTSQFAVLR 883 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHH----------HHHHHHHHHHTTCHHHHHHHHHTC-CC-SCTTCCCSCSSHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHH----------HHHHHHHHHhcCCHHHHHHHHHHH-hh-hhcccchhhhhhc
Confidence 455566667777777776555543 3222 233456788899999999999876 21 1111
Q ss_pred --------------ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCC-Cc--hhhHHHHHHHHHhhCChHHHHHHHHH
Q 042593 135 --------------SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNA-FD--IHVSNCLIDTYAKCGCIFSASKLFED 197 (352)
Q Consensus 135 --------------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~a~~~~~~ 197 (352)
-..-|..++..+.+.+..+.+.++-....+..... ++ ...|..+.+++...|++++|...+-.
T Consensus 884 ~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 884 EFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred ccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 01236677777888888888877777665543221 01 12577788888888888888888877
Q ss_pred hccCCCCHhhHHHHHHHHHcCCCHHHHH
Q 042593 198 TSVDRKNLVSWTTIISGFAMHGMGKEAV 225 (352)
Q Consensus 198 ~~~~~~~~~~~~~li~~~~~~~~~~~a~ 225 (352)
+.....-......|+..+|.+|..+.-.
T Consensus 964 ~pd~~~r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 964 LSTTPLKKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCChhhhh
Confidence 7554444566777777777777655443
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.90 E-value=0.41 Score=34.02 Aligned_cols=87 Identities=8% Similarity=-0.156 Sum_probs=40.0
Q ss_pred CHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhh---HHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHH
Q 042593 115 RSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRN---CQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSA 191 (352)
Q Consensus 115 ~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 191 (352)
++..+.+-|.+. ...|. |+..+-..+.-++.+..+... +..+++.+.+.+.+.......-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e-~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSE-KAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHH-HHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHH-hccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344444444444 22222 455554455555555554444 5555555554431100222222444455566666666
Q ss_pred HHHHHHhccCCC
Q 042593 192 SKLFEDTSVDRK 203 (352)
Q Consensus 192 ~~~~~~~~~~~~ 203 (352)
.+.++.+....|
T Consensus 94 ~~~~~~lL~~eP 105 (126)
T 1nzn_A 94 LKYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHHCT
T ss_pred HHHHHHHHHhCC
Confidence 666665544444
No 235
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.89 E-value=4.8 Score=35.69 Aligned_cols=249 Identities=10% Similarity=0.060 Sum_probs=139.7
Q ss_pred CCcchHHHHHHHHHHh-----CCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCc---hhHHHHHHHHHhHHHHHHH
Q 042593 38 SYPNLGTQLHAVFSKV-----GFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL---VTWNVIITGLVKWTGIIDG 109 (352)
Q Consensus 38 g~~~~a~~~~~~m~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~i~~~~~~~~li~~ 109 (352)
|+++.|.+.+-.+.+. +...+......++..|...|+++...+.+.-+.+... .....++ +.++.-
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V------~~~~~~ 103 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMI------QKVMEY 103 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHH------HHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHH------HHHHHH
Confidence 6778888776665542 2344566788899999999999988776665543221 2222222 222222
Q ss_pred HHhcCCHH--HHHHHHHHhHhc-cC-CCC---ChhhHHHHHHHHHhCCChhhHHHHHHHHHhc--CCCC--CchhhHHHH
Q 042593 110 YSRMNRSN--EALALFRRMAAC-EY-TEP---SEITILAVLPAIWKNGEVRNCQLIHGYGEKR--GFNA--FDIHVSNCL 178 (352)
Q Consensus 110 ~~~~~~~~--~a~~~~~~m~~~-~~-~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~~l 178 (352)
.......+ .-..+.+..... .| +-. .......+...+...|++.+|..++..+... |... .-...+...
T Consensus 104 l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q 183 (445)
T 4b4t_P 104 LKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQ 183 (445)
T ss_dssp HHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred HhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 22233222 222233322110 11 111 1112346677788889999999999987532 2211 014567778
Q ss_pred HHHHHhhCChHHHHHHHHHhccC----C--CC--HhhHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCCCcchhh-----
Q 042593 179 IDTYAKCGCIFSASKLFEDTSVD----R--KN--LVSWTTIISGFAMHGMGKEAVENFERMQKVG-LKPNRSWRI----- 244 (352)
Q Consensus 179 i~~~~~~g~~~~a~~~~~~~~~~----~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~----- 244 (352)
++.|...+++..|..++..+... . |+ ...|...+..+...+++.+|...|.+..+.- ...+.....
T Consensus 184 ~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~ 263 (445)
T 4b4t_P 184 MELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSH 263 (445)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 88899999999999888876421 2 22 2345666777788889988888887775421 111111111
Q ss_pred ----------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHc--CChhHHHHHHhcCCC
Q 042593 245 ----------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERA--GRLEQAEEVASGIPS 293 (352)
Q Consensus 245 ----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~ 293 (352)
...-..+....... .-.++...|..++.+|... .++..+.+.|.....
T Consensus 264 ~v~~~iLa~~~~~~~~ll~~~~~~-~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 264 IVYFLVLSPYGNLQNDLIHKIQND-NNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp HHHHHHHSSCSSTTHHHHHSHHHH-SSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred HHHHHHhCCCCchHHHHHHHHhhc-ccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhc
Confidence 11111222222222 2224566788888888764 457777777765543
No 236
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.65 E-value=2.2 Score=40.48 Aligned_cols=134 Identities=9% Similarity=-0.043 Sum_probs=80.8
Q ss_pred cccHHHHHHHHHhcCC-cchHHHHHHHHHHhCCCCchhh--HHHHHHHHHhcCC-hhHHHHHhccC-----------CCC
Q 042593 24 SFTYSFLIRTCVTLSY-PNLGTQLHAVFSKVGFQSHVYV--NTALGDMYVSLGF-LKDSSKLFDEL-----------PER 88 (352)
Q Consensus 24 ~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~-~~~a~~~~~~m-----------~~~ 88 (352)
-.....+++.+...|+ .+.|.++++.+.... |...+ ...++..+...++ --+|.+++.+. ...
T Consensus 248 N~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~ 325 (754)
T 4gns_B 248 NYLMYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPR 325 (754)
T ss_dssp SHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccc
Confidence 3344556666666666 477999999998875 43322 2333433333332 12344444332 222
Q ss_pred CchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh-hHHHHHHHHHhCCChhhHHHHHHHH
Q 042593 89 NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI-TILAVLPAIWKNGEVRNCQLIHGYG 162 (352)
Q Consensus 89 ~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~ 162 (352)
+......+-......+.-.+-+.+.|+++-|+.+-++... ..|+.. +|..|..+|...|+++.|+-.+..+
T Consensus 326 ~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~---~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 326 DADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE---LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh---cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 2211100000000033344566778999999999998843 457765 9999999999999999999888877
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.11 E-value=1.2 Score=31.57 Aligned_cols=87 Identities=7% Similarity=-0.107 Sum_probs=63.6
Q ss_pred HHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHH---HHHHHHHhccCC-C--CHhhHHHHHHHHHcCC
Q 042593 146 IWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFS---ASKLFEDTSVDR-K--NLVSWTTIISGFAMHG 219 (352)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~-~--~~~~~~~li~~~~~~~ 219 (352)
-.....+..+.+-|......|. + +..+--.+..+++++....+ ++.+++++.... | .....-.|.-++.+.|
T Consensus 11 ~~~~~~l~~~~~~y~~e~~~~~-~-s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 11 LVSVEDLLKFEKKFQSEKAAGS-V-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC-C-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHhccCC-C-cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence 3334455566666766666555 3 66666677788888887666 899999887664 4 3344556677899999
Q ss_pred CHHHHHHHHHHHHhc
Q 042593 220 MGKEAVENFERMQKV 234 (352)
Q Consensus 220 ~~~~a~~~~~~m~~~ 234 (352)
++++|.+.++.+.+.
T Consensus 89 ~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 89 EYEKALKYVRGLLQT 103 (126)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999999984
No 238
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.99 E-value=11 Score=37.88 Aligned_cols=198 Identities=12% Similarity=0.050 Sum_probs=120.9
Q ss_pred cHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC---C------CchhHHHH
Q 042593 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE---R------NLVTWNVI 96 (352)
Q Consensus 26 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~------~~~~~~~~ 96 (352)
....++..+...+..+.+.++.... +.|+...=.+..+|...|++++|.+.|++... . ....+..+
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~ 888 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEI 888 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccc
Confidence 3445566666777777766654332 33444434567788899999999999988742 0 00111111
Q ss_pred H---------HHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC-h--hhHHHHHHHHHhCCChhhHHHHHHHHHh
Q 042593 97 I---------TGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS-E--ITILAVLPAIWKNGEVRNCQLIHGYGEK 164 (352)
Q Consensus 97 i---------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 164 (352)
. ..| |..++..+-+.+.++.+.++-.......+..++ . ..|..+.+++...|++++|...+-.+..
T Consensus 889 ~~~~~~~~~l~~Y--Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 889 AEKYHHQNLLSCY--YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp HHTTTSCCSSHHH--HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred cccccccccHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 1 011 778888999999999998887766333322221 1 2578899999999999999999987765
Q ss_pred cCCCCCchhhHHHHHHHHHhhCChHHH------------HHHHHHhccC----CCCHhhHHHHHHHHHcCCCHHH-HHHH
Q 042593 165 RGFNAFDIHVSNCLIDTYAKCGCIFSA------------SKLFEDTSVD----RKNLVSWTTIISGFAMHGMGKE-AVEN 227 (352)
Q Consensus 165 ~~~~~~~~~~~~~li~~~~~~g~~~~a------------~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~-a~~~ 227 (352)
... -......|+...|..|..+.- .+++...-+. ...+.-|..|=.-+..+|++.+ |.-+
T Consensus 967 ~~~---r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vm 1043 (1139)
T 4fhn_B 967 TPL---KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAII 1043 (1139)
T ss_dssp SSS---CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHH---HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHH
Confidence 543 345667778878877765443 3333221111 1111234555555666777744 4555
Q ss_pred HHHHHh
Q 042593 228 FERMQK 233 (352)
Q Consensus 228 ~~~m~~ 233 (352)
|+...+
T Consensus 1044 Ye~~~R 1049 (1139)
T 4fhn_B 1044 YEKLSR 1049 (1139)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.52 E-value=0.77 Score=40.01 Aligned_cols=79 Identities=13% Similarity=0.315 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHHHh-----cCCCCCcchhhhH
Q 042593 173 HVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGMGKEAVENFERMQK-----VGLKPNRSWRIGE 246 (352)
Q Consensus 173 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~~ 246 (352)
.+...++.++...|+.++|...+..+....| +...|..+|.++.+.|+..+|.+.|++..+ .|+.|..
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~------ 245 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP------ 245 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH------
Confidence 3455678888999999999998888765544 788999999999999999999999998754 4777753
Q ss_pred hHHHHHHHHHH
Q 042593 247 EGLKFFDKMVE 257 (352)
Q Consensus 247 ~a~~~~~~m~~ 257 (352)
+..++++.+..
T Consensus 246 ~l~~l~~~il~ 256 (388)
T 2ff4_A 246 TLRALNERILR 256 (388)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 34455555554
No 240
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.76 E-value=2.3 Score=31.77 Aligned_cols=103 Identities=10% Similarity=0.054 Sum_probs=64.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh-------hhHHHHHHHHHhCCChhhHHHHHHHHHhcCC--C-C---
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE-------ITILAVLPAIWKNGEVRNCQLIHGYGEKRGF--N-A--- 169 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~-~--- 169 (352)
+-.-++.+...+.++.|.-+.+.+....+..|+. .++..+.+++...+++..|...|++..+..- . .
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3344566777888888888877763333333442 2677888889999999999999998643211 0 0
Q ss_pred -----------------CchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCH
Q 042593 170 -----------------FDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205 (352)
Q Consensus 170 -----------------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 205 (352)
.+...--.+-.+|.+.++.++|+.+++.+.....++
T Consensus 103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~ 155 (167)
T 3ffl_A 103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTP 155 (167)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCH
T ss_pred cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCH
Confidence 011222345666667777777777777664443333
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.21 E-value=1.8 Score=29.15 Aligned_cols=61 Identities=7% Similarity=-0.003 Sum_probs=40.4
Q ss_pred ChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHH
Q 042593 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTII 212 (352)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li 212 (352)
|.-++.+-++.+-...+.| ++.+..+.+++|.+.+++..|.++|+.++.+ .....+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP-~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVP-EPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3445666666666777777 7777888888888888888888888776544 22333455544
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.84 E-value=2.8 Score=30.79 Aligned_cols=63 Identities=11% Similarity=0.154 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHH
Q 042593 114 NRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180 (352)
Q Consensus 114 ~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 180 (352)
+|.++|.++|+.+... .-.- ...|.....-=.+.|+++.|.+++......+..| .......|+
T Consensus 74 ~D~d~aR~vy~~a~~~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~--~~~le~a~~ 136 (161)
T 4h7y_A 74 QEPDDARDYFQMARAN-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP--LEMLEIALR 136 (161)
T ss_dssp HCGGGCHHHHHHHHHH-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC--HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc--HHHHHHHHH
Confidence 7888888888888433 2222 4455555555567889999999998888877664 444444443
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.76 E-value=3 Score=30.61 Aligned_cols=55 Identities=13% Similarity=0.021 Sum_probs=37.7
Q ss_pred hhCChHHHHHHHHHhccCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Q 042593 184 KCGCIFSASKLFEDTSVDR-KNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238 (352)
Q Consensus 184 ~~g~~~~a~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 238 (352)
..++.++|.++|+.+.+.. .=...|-...+-=.++|+..+|.+++.+....+.+|
T Consensus 72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 3478888888888774431 114555555555678888888888888888765554
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.73 E-value=2.5 Score=40.13 Aligned_cols=127 Identities=12% Similarity=0.003 Sum_probs=79.1
Q ss_pred HHHHHHHHHhCCC-hhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCC-hHHHHHHHHHhcc-------C--CCCH--
Q 042593 139 ILAVLPAIWKNGE-VRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC-IFSASKLFEDTSV-------D--RKNL-- 205 (352)
Q Consensus 139 ~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~-------~--~~~~-- 205 (352)
...++..+...++ .+.|..+++.+.+..... +......++..+.+.++ --+|.+++.+..+ . ..+.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~-~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIH-DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCch-hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 3455666666666 577999999988875433 33333334444333332 2234444443221 1 1111
Q ss_pred --------hhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhhhHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHH
Q 042593 206 --------VSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRIGEEGLKFFDKMVEECEVLPDIKHYGCLIDILER 277 (352)
Q Consensus 206 --------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 277 (352)
...+.-..-|...|+++-|..+-++.... .+-+-.+|..|..+|.+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--------------------------aPseF~tW~~La~vYi~ 383 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--------------------------ALDSFESWYNLARCHIK 383 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CSSCHHHHHHHHHHHHH
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--------------------------CchhhHHHHHHHHHHHH
Confidence 11222234466788999999999987752 22367899999999999
Q ss_pred cCChhHHHHHHhcCC
Q 042593 278 AGRLEQAEEVASGIP 292 (352)
Q Consensus 278 ~g~~~~A~~~~~~m~ 292 (352)
.|+++.|+-.++.+.
T Consensus 384 l~d~e~ALLtLNScP 398 (754)
T 4gns_B 384 KEEYEKALFAINSMP 398 (754)
T ss_dssp TTCHHHHHHHHHHSC
T ss_pred hccHHHHHHHHhcCC
Confidence 999999999999886
No 245
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.41 E-value=12 Score=33.74 Aligned_cols=64 Identities=8% Similarity=-0.042 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHhccCCCCCc-hhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHh
Q 042593 60 YVNTALGDMYVSLGFLKDSSKLFDELPERNL-VTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRM 126 (352)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m 126 (352)
..+|.+++.|...+.++.|..+.++..-|.. ...+-..+- +.-+...+.-.+++.+|.+.+...
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY---~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARY---FFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHH---HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHH---HHHHHHHHHHhccHHHHHHHHHHH
Confidence 4578888999999999999999998876643 222222221 334455666788999999888887
No 246
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.86 E-value=12 Score=33.12 Aligned_cols=166 Identities=5% Similarity=-0.053 Sum_probs=105.1
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHh--CCCCc---hhhHHHHHHHHHhcCChhHHHHHhccCCC-----CCchhHHHHH
Q 042593 28 SFLIRTCVTLSYPNLGTQLHAVFSKV--GFQSH---VYVNTALGDMYVSLGFLKDSSKLFDELPE-----RNLVTWNVII 97 (352)
Q Consensus 28 ~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~~i 97 (352)
..+.+.+-..|++.+|.+++..+... |.... ...+...+..|...+++..|..++.++.. +.......-+
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45778888999999999999988642 32121 35677888999999999999998888642 1111111111
Q ss_pred HHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhH----HHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchh
Q 042593 98 TGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI----LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIH 173 (352)
Q Consensus 98 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 173 (352)
|...+..+...+++.+|.+.|.+........-|...+ ..++.+..-.+....-..+.....+....+ +..
T Consensus 221 -----~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~-~l~ 294 (445)
T 4b4t_P 221 -----YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLK-KLE 294 (445)
T ss_dssp -----HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCH-HHH
T ss_pred -----HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhccccc-ccH
Confidence 7777788888999999999888874333232333222 222222233333333344444444333334 778
Q ss_pred hHHHHHHHHHhh--CChHHHHHHHHHhc
Q 042593 174 VSNCLIDTYAKC--GCIFSASKLFEDTS 199 (352)
Q Consensus 174 ~~~~li~~~~~~--g~~~~a~~~~~~~~ 199 (352)
.|..++.+|... .+++.+.+.|....
T Consensus 295 ~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 295 SQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 889999999765 35677777776543
No 247
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.38 E-value=3.9 Score=29.28 Aligned_cols=61 Identities=7% Similarity=-0.003 Sum_probs=42.8
Q ss_pred ChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHH
Q 042593 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTII 212 (352)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li 212 (352)
|.-+..+-++.+....+.| ++.+..+.+++|.+.+|+.-|.++|+.++.+ .+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVP-eP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVP-EPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCC-CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 3344566666666777777 8888888888888888888888888887654 33344455554
No 248
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=86.33 E-value=11 Score=30.30 Aligned_cols=186 Identities=11% Similarity=0.002 Sum_probs=96.4
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHhCCCCchh---hHHHHHHHHHhcCChhHHHHHhccCCCCC---chhHHHHHHHHH
Q 042593 28 SFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY---VNTALGDMYVSLGFLKDSSKLFDELPERN---LVTWNVIITGLV 101 (352)
Q Consensus 28 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~i~~~~ 101 (352)
++.+...++.|+.+. ++.+.+.|..++.. .-...+...+..|+.+-+..+++.-..++ ..-
T Consensus 6 ~~~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--------- 72 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDL----VQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG--------- 72 (285)
T ss_dssp HHHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC---------
T ss_pred chHHHHHHHcCCHHH----HHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC---------
Confidence 345667777888754 44455566544422 12245666778899888888877643322 221
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh---hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchh-----
Q 042593 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE---ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIH----- 173 (352)
Q Consensus 102 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----- 173 (352)
++ .+...+..|+.+-+..+++ .|..++. .-. +.+...+..|+.+-+. .+.+.|..+ +..
T Consensus 73 -~t-~L~~A~~~~~~~~v~~Ll~-----~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~----~Ll~~g~~~-~~~~~~~~ 139 (285)
T 1wdy_A 73 -AT-PFLLAAIAGSVKLLKLFLS-----KGADVNECDFYGF-TAFMEAAVYGKVKALK----FLYKRGANV-NLRRKTKE 139 (285)
T ss_dssp -CC-HHHHHHHHTCHHHHHHHHH-----TTCCTTCBCTTCC-BHHHHHHHTTCHHHHH----HHHHTTCCT-TCCCCCCH
T ss_pred -CC-HHHHHHHcCCHHHHHHHHH-----cCCCCCccCcccC-CHHHHHHHhCCHHHHH----HHHHhCCCc-ccccccHH
Confidence 11 2233445566654443333 3333332 222 2344455667765444 444444433 211
Q ss_pred -------hHHHHHHHHHhhCChHHHHHHHHHhccC--CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCc
Q 042593 174 -------VSNCLIDTYAKCGCIFSASKLFEDTSVD--RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240 (352)
Q Consensus 174 -------~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 240 (352)
.-...+...+..|+.+-+..+++..... ..|....+.+.. .+..++.....++.+.+.+.|..++.
T Consensus 140 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~-a~~~~~~~~~~~i~~~Ll~~g~~~~~ 214 (285)
T 1wdy_A 140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH-ALLSSDDSDVEAITHLLLDHGADVNV 214 (285)
T ss_dssp HHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH-HHHCSCTTTHHHHHHHHHHTTCCSSC
T ss_pred HHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHH-HHHccccchHHHHHHHHHHcCCCCCC
Confidence 0113455566788888777777653221 223333333333 34455655566777777777766653
No 249
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=86.15 E-value=8.8 Score=32.06 Aligned_cols=158 Identities=11% Similarity=-0.047 Sum_probs=94.6
Q ss_pred hhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHH----
Q 042593 152 VRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVEN---- 227 (352)
Q Consensus 152 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~---- 227 (352)
++....-++.-.+.|---.-.+.|.++..=|.+.+++++|.+++..- ...+.+.|+...|.++
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~g-------------a~~ll~~~Q~~sa~DLa~ll 79 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQG-------------ALSFLKAKQGGSGTDLIFYL 79 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-------------HHHHHHCCCcchHHHHHHHH
Confidence 34444444444444422213456778888888889999998887654 3456677887776665
Q ss_pred HHHHHhcCCCCCcchhh------------hHhHHHHHHHHHH----hcC-CCCChhhHHHHHHHHHHcCChhHHHHHHhc
Q 042593 228 FERMQKVGLKPNRSWRI------------GEEGLKFFDKMVE----ECE-VLPDIKHYGCLIDILERAGRLEQAEEVASG 290 (352)
Q Consensus 228 ~~~m~~~~~~p~~~~~~------------~~~a~~~~~~m~~----~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 290 (352)
.+-..+.+++++..+.. ...-.++.+++++ ..+ ..-|+.....+...|.+.|++.+|+.-|-.
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 44455567887765544 1112233333332 211 122667778888999999999999987763
Q ss_pred CCCCCCCchhhHHHHHHHHhc---ccccCcccccccc
Q 042593 291 IPSQITNVVVWRTGFLRLLIN---SYFFSPITLNSQR 324 (352)
Q Consensus 291 m~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~ 324 (352)
-... +...+..++.-+... |...++--+..+.
T Consensus 160 ~~~~--s~~~~a~~l~~w~~~~~~~~~~e~dlf~~Ra 194 (312)
T 2wpv_A 160 GTHD--SMIKYVDLLWDWLCQVDDIEDSTVAEFFSRL 194 (312)
T ss_dssp SCHH--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CCCc--cHHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Confidence 3322 466677766666665 5555544444444
No 250
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=85.67 E-value=11 Score=36.87 Aligned_cols=162 Identities=12% Similarity=0.049 Sum_probs=91.2
Q ss_pred HHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHH--HHhhCChHHHHHHHHHhccC-CCCHhhHH---HHHHHHHc
Q 042593 144 PAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT--YAKCGCIFSASKLFEDTSVD-RKNLVSWT---TIISGFAM 217 (352)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~-~~~~~~~~---~li~~~~~ 217 (352)
..+.-.|+-+....++..+.+.. +..+...+.-+ +.-.|+.+.+..+.+.+... .|.+ -|. ++.-+|+.
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~----~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~v-Rygaa~alglAyaG 572 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ----HGNITRGLAVGLALINYGRQELADDLITKMLASDESLL-RYGGAFTIALAYAG 572 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS----CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHH-HHHHHHHHHHHTTT
T ss_pred hhhcccCCHHHHHHHHHHHhccC----cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHH-HHHHHHHHHHHhcC
Confidence 33456677777788888776542 22333334444 44678888888888887644 2332 233 33446788
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCcchhh-------------hHhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCCh-hH
Q 042593 218 HGMGKEAVENFERMQKVGLKPNRSWRI-------------GEEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRL-EQ 283 (352)
Q Consensus 218 ~~~~~~a~~~~~~m~~~~~~p~~~~~~-------------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~~ 283 (352)
.|+......++..+.+.. +..... .+.+.++++.+.+ ...|.+.--..+.-+....|+. .+
T Consensus 573 TGn~~aIq~LL~~~~~d~---~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~ 647 (963)
T 4ady_A 573 TGNNSAVKRLLHVAVSDS---NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQS 647 (963)
T ss_dssp SCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHH
T ss_pred CCCHHHHHHHHHHhccCC---cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHH
Confidence 889888888988887642 111111 2333444443333 2345555555555555556654 56
Q ss_pred HHHHHhcCCCCCCCchhhHH--HHHHHHhcccccC
Q 042593 284 AEEVASGIPSQITNVVVWRT--GFLRLLINSYFFS 316 (352)
Q Consensus 284 A~~~~~~m~~~~~~~~~~~~--li~~~~~~g~~~~ 316 (352)
|..++..+... ++..+-.. +..|.+-.|..+.
T Consensus 648 aid~L~~L~~D-~d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 648 AIDVLDPLTKD-PVDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp HHHHHHHHHTC-SSHHHHHHHHHHHHHHSTTCCTT
T ss_pred HHHHHHHHccC-CCHHHHHHHHHHHHHHhcCCccc
Confidence 77788877655 33333322 3345555555554
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=85.32 E-value=18 Score=31.40 Aligned_cols=168 Identities=13% Similarity=-0.064 Sum_probs=91.1
Q ss_pred ccHHHHHHHHHhcCCcchHHHHHHHHHHh-CCCC---chhhHHHHHHHHHhcC-ChhHHHHHhccCCC---CCchhH-HH
Q 042593 25 FTYSFLIRTCVTLSYPNLGTQLHAVFSKV-GFQS---HVYVNTALGDMYVSLG-FLKDSSKLFDELPE---RNLVTW-NV 95 (352)
Q Consensus 25 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~---~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~---~~~~~~-~~ 95 (352)
.....+...+.+.|+.++..+++...... +.-| .......|++.+.... ..+.-.++..+..+ .+-.+| ..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777888877777776655431 1112 2334556666666543 23333333333221 111121 00
Q ss_pred HHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC----hhhHHHHHHHHHhCCChhhHHHHHHHHHhcC--CCC
Q 042593 96 IITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS----EITILAVLPAIWKNGEVRNCQLIHGYGEKRG--FNA 169 (352)
Q Consensus 96 ~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~ 169 (352)
-+ =..+...|...|++.+|.+++.++.+......| ...+..-+..|...++..++...+....... +.+
T Consensus 100 ~l-----~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~ 174 (394)
T 3txn_A 100 SL-----EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC 174 (394)
T ss_dssp HH-----HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HH-----HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence 00 225677888888999988888888443221111 1246666777888888888888887775432 212
Q ss_pred CchhhHHH----HHHHHH-hhCChHHHHHHHHHh
Q 042593 170 FDIHVSNC----LIDTYA-KCGCIFSASKLFEDT 198 (352)
Q Consensus 170 ~~~~~~~~----li~~~~-~~g~~~~a~~~~~~~ 198 (352)
++.+... -.-.+. ..+++..|...|-+.
T Consensus 175 -~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 175 -PPKVQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 2222211 122234 677888887776554
No 252
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.83 E-value=6.9 Score=26.27 Aligned_cols=85 Identities=7% Similarity=0.031 Sum_probs=57.7
Q ss_pred CcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHH
Q 042593 39 YPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNE 118 (352)
Q Consensus 39 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~ 118 (352)
.-++|..+-+.+...+- ....--+-+..+.+.|++++|..+.+.+.-||... |-+|. -.+.|..++
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlep----------w~ALc--e~rlGl~s~ 86 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEP----------WFALC--EWHLGLGAA 86 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHH----------HHHHH--HHHTTCHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHH----------HHHHH--HHhcccHHH
Confidence 45677778888877663 22222233445668899999999999998899988 44443 347788888
Q ss_pred HHHHHHHhHhccCCCCChhhH
Q 042593 119 ALALFRRMAACEYTEPSEITI 139 (352)
Q Consensus 119 a~~~~~~m~~~~~~~p~~~t~ 139 (352)
+..-+.++ ...| .|....|
T Consensus 87 le~rL~~l-a~sg-~p~~q~F 105 (115)
T 2uwj_G 87 LDRRLAGL-GGSS-DPALADF 105 (115)
T ss_dssp HHHHHHHH-HTCS-SHHHHHH
T ss_pred HHHHHHHH-HhCC-CHHHHHH
Confidence 88888788 5554 3444343
No 253
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=84.35 E-value=7.4 Score=30.50 Aligned_cols=190 Identities=9% Similarity=-0.019 Sum_probs=98.9
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHhCCCCchhh--HHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHH
Q 042593 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYV--NTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGII 107 (352)
Q Consensus 30 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li 107 (352)
.+...++.|+.+.+..+++.+.+.|..++... -...+...+..|+.+-+..+++.-..++..... -...+
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~--------g~t~l 83 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRH--------GQTAA 83 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT--------SCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCC--------CCCHH
Confidence 35667788999988888888877776554321 223456667788888888777754332221100 11122
Q ss_pred HHHHhcCCHHHHHHHHHHhHhccCCCCC---hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCch---hhHHHHHHH
Q 042593 108 DGYSRMNRSNEALALFRRMAACEYTEPS---EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDI---HVSNCLIDT 181 (352)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~ 181 (352)
...+..|+.+-+..+++.. ...++.++ ..-. +.+...+..|+.+-+ +.+.+.|..+ +. ..-...+..
T Consensus 84 ~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~~----~~Ll~~g~~~-~~~~~~~g~t~L~~ 156 (241)
T 1k1a_A 84 HLACEHRSPTCLRALLDSA-APGTLDLEARNYDGL-TALHVAVNTECQETV----QLLLERGADI-DAVDIKSGRSPLIH 156 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHS-CTTSCCTTCCCTTSC-CHHHHHHHHTCHHHH----HHHHHTTCCT-TCCCTTTCCCHHHH
T ss_pred HHHHHcCCHHHHHHHHHcC-CCccccccccCcCCC-cHHHHHHHcCCHHHH----HHHHHcCCCc-ccccccCCCcHHHH
Confidence 3345677777666666654 32222222 2222 233344455665444 4444455443 22 112234555
Q ss_pred HHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Q 042593 182 YAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239 (352)
Q Consensus 182 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 239 (352)
.++.|+.+-+.-+++.-... ..|..-.+. +...+..|+.+ +.+.+.+.|..++
T Consensus 157 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 157 AVENNSLSMVQLLLQHGANVNAQMYSGSSA-LHSASGRGLLP----LVRTLVRSGADSS 210 (241)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCBCTTSCBH-HHHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCH-HHHHHHcCCHH----HHHHHHhcCCCCC
Confidence 66778877777666642111 122222222 33334556654 4445555666555
No 254
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=84.35 E-value=7.4 Score=26.19 Aligned_cols=85 Identities=14% Similarity=0.137 Sum_probs=57.0
Q ss_pred CcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHH
Q 042593 39 YPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNE 118 (352)
Q Consensus 39 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~ 118 (352)
.-++|..+-+.+...+- ....--+-+..+.+.|++++|..+.+.+.-||... |-+|.. .+.|..++
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlep----------w~ALce--~rlGl~s~ 87 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEP----------WLALCE--YRLGLGSA 87 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHH----------HHHHHH--HHHTCHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHH----------HHHHHH--HhcccHHH
Confidence 45677778888877663 22222233445668899999999999998899988 444433 46788888
Q ss_pred HHHHHHHhHhccCCCCChhhH
Q 042593 119 ALALFRRMAACEYTEPSEITI 139 (352)
Q Consensus 119 a~~~~~~m~~~~~~~p~~~t~ 139 (352)
+..-+.++ ...| .|....|
T Consensus 88 le~rL~~l-a~sg-~p~~q~F 106 (116)
T 2p58_C 88 LESRLNRL-ARSQ-DPRIQTF 106 (116)
T ss_dssp HHHHHHHH-TTCC-CHHHHHH
T ss_pred HHHHHHHH-HhCC-CHHHHHH
Confidence 88877777 5554 3443333
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.96 E-value=3 Score=36.20 Aligned_cols=96 Identities=9% Similarity=-0.139 Sum_probs=67.7
Q ss_pred HHHHHHHH---HhcCCHHHHHHHHHHhHhcc-C-CCCCh------h------------hHHHHHHHHHhCCChhhHHHHH
Q 042593 103 WTGIIDGY---SRMNRSNEALALFRRMAACE-Y-TEPSE------I------------TILAVLPAIWKNGEVRNCQLIH 159 (352)
Q Consensus 103 ~~~li~~~---~~~~~~~~a~~~~~~m~~~~-~-~~p~~------~------------t~~~ll~~~~~~~~~~~a~~~~ 159 (352)
|..++... ...|+.+.|.+.+.+..... | .-++. . +...++.++...|+.+++...+
T Consensus 115 f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l 194 (388)
T 2ff4_A 115 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL 194 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 44444432 34578888888888774432 2 11221 0 1224456667889999999999
Q ss_pred HHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhcc
Q 042593 160 GYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200 (352)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 200 (352)
..+..... .+...+..+|.++.+.|+..+|++.|+.+..
T Consensus 195 ~~~~~~~P--~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 195 EALTFEHP--YREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHST--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88877643 3888999999999999999999999998643
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.64 E-value=9.9 Score=27.12 Aligned_cols=71 Identities=13% Similarity=-0.078 Sum_probs=41.9
Q ss_pred CCChhhHHHHHHHHHhCCC---hhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCC
Q 042593 133 EPSEITILAVLPAIWKNGE---VRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204 (352)
Q Consensus 133 ~p~~~t~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 204 (352)
.|+..|--...-++.+..+ ...+..+++.+.+.+... .....-.|.-++.+.|+++.|.+..+.+....|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~-~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 4555554445555555543 345666666666655322 3344445666777777777777777777666554
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.11 E-value=12 Score=27.82 Aligned_cols=116 Identities=12% Similarity=-0.042 Sum_probs=64.7
Q ss_pred HHHHHHHhhCChHHHHHHHHHhccC---CCCH-------hhHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCCCcchhhh
Q 042593 177 CLIDTYAKCGCIFSASKLFEDTSVD---RKNL-------VSWTTIISGFAMHGMGKEAVENFERMQKVG-LKPNRSWRIG 245 (352)
Q Consensus 177 ~li~~~~~~g~~~~a~~~~~~~~~~---~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ 245 (352)
.-++.+...|.++.|+-+.+.+... .|++ .++..+.+++...|++.+|...|++.++.. .-+...+...
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3456666677777776666553322 3432 345666778888999999999998864421 1111000000
Q ss_pred HhHHHHHHHHHHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 246 EEGLKFFDKMVEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 246 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
....-..-.......++...--.+..+|.+.|++++|..+++.+..+
T Consensus 105 --~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 105 --STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred --cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 00000000000012223344446889999999999999999998776
No 258
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.53 E-value=9 Score=25.86 Aligned_cols=62 Identities=13% Similarity=0.026 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHH
Q 042593 116 SNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180 (352)
Q Consensus 116 ~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 180 (352)
.=++.+-++.+ -...+.|+.....+.++||.|.+++..|.++++-++..- .. ...+|..+++
T Consensus 26 ~~e~rrglN~l-~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~-~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTL-VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GP-HKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHH-TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TT-CTTHHHHHHH
T ss_pred HHHHHHHHHHH-hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cC-chhhHHHHHH
Confidence 33555666666 556678999999999999999999999999999887543 22 4456777754
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.09 E-value=22 Score=29.98 Aligned_cols=59 Identities=10% Similarity=-0.044 Sum_probs=37.3
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHHHhcccccCcccccccc
Q 042593 264 DIKHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYFFSPITLNSQR 324 (352)
Q Consensus 264 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 324 (352)
|+..-..+...|.+.|++.+|+.-|-. ... +....+..++.-+...+...++--+..+.
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~il-g~~-~s~~~~a~mL~ew~~~~~~~e~dlfiaRa 193 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLVL-GTK-ESPEVLARMEYEWYKQDESHTAPLYCARA 193 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTT-SCT-THHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHh-cCC-chHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 667777889999999999999988842 222 22356666555555555444443333343
No 260
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=80.69 E-value=10 Score=32.41 Aligned_cols=61 Identities=13% Similarity=0.067 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCC--hHHHHHHHHHhcc
Q 042593 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC--IFSASKLFEDTSV 200 (352)
Q Consensus 138 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~~ 200 (352)
....++.-|...|+.++|.+.++++..-... ...+...+..++-+.++ .+.+.+++..+..
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh--he~V~~av~~aLE~~~~~~re~~~~LL~~L~~ 281 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH--HELVYEAIVMVLESTGESAFKMILDLLKSLWK 281 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH--HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch--HHHHHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence 4678899999999999999999988643221 34455566666665543 4557777777643
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.45 E-value=9.6 Score=30.97 Aligned_cols=117 Identities=5% Similarity=-0.025 Sum_probs=75.9
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC--CCchhHHHHHHHHHhHHHHHH
Q 042593 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE--RNLVTWNVIITGLVKWTGIID 108 (352)
Q Consensus 31 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~i~~~~~~~~li~ 108 (352)
+....+.|+++++++....-++.. |-|...-..|+..+|-.|++++|.+-++...+ |+... .+.+ |-.+|.
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~-~a~~-----yr~lI~ 76 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP-GASQ-----LRHLVK 76 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH-HHHH-----HHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH-HHHH-----HHHHHH
Confidence 345678899999999988888876 67888888999999999999999988887764 33221 0000 444443
Q ss_pred HHHhcCCHHHHHHHHHHhHhccCCCC-----ChhhHHHHHHHHH--hCCChhhHHHHHHHHHhc
Q 042593 109 GYSRMNRSNEALALFRRMAACEYTEP-----SEITILAVLPAIW--KNGEVRNCQLIHGYGEKR 165 (352)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~~~~~p-----~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 165 (352)
+ +..=.+. -..+-.| ...-...++.+.. ..|+.++|..+-.++.+.
T Consensus 77 a----------E~~R~~v-faG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 77 A----------AQARKDF-AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp H----------HHHHHHH-TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H----------HHHHHHH-HcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 3 1111222 2222222 2224555666554 458999999888888665
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=80.40 E-value=3.7 Score=33.37 Aligned_cols=58 Identities=10% Similarity=0.019 Sum_probs=39.5
Q ss_pred HHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCC
Q 042593 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204 (352)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 204 (352)
...+.|+++++......-++.... |...-..++..+|-.|++++|.+-++...+..|+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~--da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK--DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 345667777777777766666543 6777777777888888888877777765444443
No 263
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=79.81 E-value=18 Score=27.46 Aligned_cols=91 Identities=11% Similarity=0.049 Sum_probs=36.6
Q ss_pred CChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHH
Q 042593 134 PSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIIS 213 (352)
Q Consensus 134 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~ 213 (352)
++...-...+.++.+.++.+....+.+ +.+ .+ +..+-...+.++++.++.+....+.+.+ ..++...-...+.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~---d~-~~~vr~~a~~aL~~~~~~~~~~~L~~~l--~d~~~~vr~~A~~ 160 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPLIK-ALK---DE-DWFVRIAAAFALGEIGDERAVEPLIKAL--KDEDGWVRQSAAD 160 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CS-SHHHHHHHHHHHHHHTCGGGHHHHHHHT--TCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHH-HHc---CC-CHHHHHHHHHHHHHhCCHHHHHHHHHHH--cCCCHHHHHHHHH
Confidence 444444445555555554332222222 221 12 4444445555555555433222222222 1334444444444
Q ss_pred HHHcCCCHHHHHHHHHHHH
Q 042593 214 GFAMHGMGKEAVENFERMQ 232 (352)
Q Consensus 214 ~~~~~~~~~~a~~~~~~m~ 232 (352)
++.+.|. +++...+..+.
T Consensus 161 aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 161 ALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp HHHHHCS-HHHHHHHHHHH
T ss_pred HHHHhCc-hhHHHHHHHHH
Confidence 4444443 23333333333
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.91 E-value=12 Score=32.88 Aligned_cols=60 Identities=7% Similarity=0.044 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC--hhhHHHHHHHHHhCCChhhHHHHHHHHH
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPS--EITILAVLPAIWKNGEVRNCQLIHGYGE 163 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 163 (352)
+..+..-|.+.|++++|.+.|.++ ......+. ...+..+++.+...+++..+...+....
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~-~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKS-LSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHH-HHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH-HHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344555555666666666666665 32222222 2245555555555566666555555554
No 265
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=76.89 E-value=11 Score=30.76 Aligned_cols=143 Identities=10% Similarity=-0.076 Sum_probs=69.3
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCC---CchhHHHHHHHHHhHHHHH
Q 042593 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPER---NLVTWNVIITGLVKWTGII 107 (352)
Q Consensus 31 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~i~~~~~~~~li 107 (352)
+...+..|+.+ +.+.+.+.|..++...-...+...+..|+.+-+..+++.-..+ |..- ++. +
T Consensus 35 L~~A~~~g~~~----~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g----------~t~-L 99 (285)
T 3kea_A 35 SYYAIADNNVR----LVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKG----------NTA-L 99 (285)
T ss_dssp HHHHHHTTCHH----HHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTS----------CCH-H
T ss_pred HHHHHHcCCHH----HHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC----------CcH-H
Confidence 44555566654 3444455555544433334455666777777777777653332 2222 122 2
Q ss_pred HHHHhcCCHHHHHHHHHHhHhccCCCCC---hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHh
Q 042593 108 DGYSRMNRSNEALALFRRMAACEYTEPS---EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK 184 (352)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 184 (352)
...+..|+.+-+..+++. |..++ ..-+.+.+...+..|+.+-+ +.+.+.|....+...-...+...+.
T Consensus 100 ~~A~~~g~~~~v~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~ 170 (285)
T 3kea_A 100 YYAVDSGNMQTVKLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIK 170 (285)
T ss_dssp HHHHHTTCHHHHHHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHH
Confidence 223455666554444443 22222 22223444445556665443 3344444433122133344555567
Q ss_pred hCChHHHHHHHHH
Q 042593 185 CGCIFSASKLFED 197 (352)
Q Consensus 185 ~g~~~~a~~~~~~ 197 (352)
.|..+-+.-+++.
T Consensus 171 ~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 171 NGHVDMMILLLDY 183 (285)
T ss_dssp TTCHHHHHHHHHH
T ss_pred cChHHHHHHHHHc
Confidence 7777766666654
No 266
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=75.00 E-value=26 Score=26.78 Aligned_cols=154 Identities=11% Similarity=0.096 Sum_probs=88.7
Q ss_pred CchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh
Q 042593 57 SHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE 136 (352)
Q Consensus 57 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 136 (352)
++...-...+..+.+.|..+....+.+.+..++... -...+.++...++.+..-.+.+.+ . .+|.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~v----------r~~a~~aL~~~~~~~~~~~L~~~l-~----~~~~ 95 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWV----------RRAAADALGQIGDERAVEPLIKAL-K----DEDG 95 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHH----------HHHHHHHHHHHCCGGGHHHHHHHT-T----CSSH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHH----------HHHHHHHHHhhCCHHHHHHHHHHH-c----CCCH
Confidence 455665666677777777555555666666566544 344455566666544333333333 2 4666
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHH
Q 042593 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFA 216 (352)
Q Consensus 137 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~ 216 (352)
..-...+.++.+.++.+....+.+ +.+ .+ +..+-...+.++.+.|+.+.. ..+..+. ..++...-...+.++.
T Consensus 96 ~vr~~a~~aL~~~~~~~~~~~L~~-~l~---d~-~~~vr~~a~~aL~~~~~~~~~-~~L~~~l-~d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 96 WVRQSAAVALGQIGDERAVEPLIK-ALK---DE-DWFVRIAAAFALGEIGDERAV-EPLIKAL-KDEDGWVRQSAADALG 168 (211)
T ss_dssp HHHHHHHHHHHHHCCGGGHHHHHH-HTT---CS-SHHHHHHHHHHHHHHCCGGGH-HHHHHHT-TCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHH-HHh---CC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHH-cCCCHHHHHHHHHHHH
Confidence 666777777777776544433333 332 23 666667777888888775443 3333333 3556666666667777
Q ss_pred cCCCHHHHHHHHHHHHh
Q 042593 217 MHGMGKEAVENFERMQK 233 (352)
Q Consensus 217 ~~~~~~~a~~~~~~m~~ 233 (352)
+.+. .++...+..+.+
T Consensus 169 ~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 169 EIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHCS-HHHHHHHHHHHH
T ss_pred HhCc-hhHHHHHHHHHh
Confidence 6665 455555555554
No 267
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=73.90 E-value=39 Score=28.44 Aligned_cols=114 Identities=11% Similarity=-0.020 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHH----HHhHhccCCCCC
Q 042593 60 YVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALF----RRMAACEYTEPS 135 (352)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~~p~ 135 (352)
.+|.++..-|.+.+++++|.+++-.- ...+.+.|+...|-++- +-. ...++++|
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~G---------------------A~~ll~~~Q~~sg~DL~~llvevy-~~~~~~~~ 93 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASV---------------------SQTLLRSGQGGSGGDLAVLLVDTF-RQAGQRVD 93 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHHHHTTCHHHHHHHHHHHHHHH-HHHTCCCC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHH---------------------HHHHHHCCCcchHHHHHHHHHHHH-HHcCCCCC
Confidence 46778888889999999999885432 12344556655554443 334 55667788
Q ss_pred hhhHHHHHHHHHhCCChh-hHHHHHHHHH----hcC--CCCCchhhHHHHHHHHHhhCChHHHHHHHH
Q 042593 136 EITILAVLPAIWKNGEVR-NCQLIHGYGE----KRG--FNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196 (352)
Q Consensus 136 ~~t~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 196 (352)
..+...++..+.....-+ .=..+.+++. +.| ..- ++..-..+...|.+.+++.+|+..|-
T Consensus 94 ~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~G-dp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 94 GASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAG-DPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp HHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTC-CHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 777777777766554321 1122333332 223 223 56667788888888888888887773
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.87 E-value=28 Score=26.80 Aligned_cols=53 Identities=9% Similarity=0.048 Sum_probs=43.4
Q ss_pred CCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC
Q 042593 149 NGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD 201 (352)
Q Consensus 149 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 201 (352)
.+.......+|..|...|+...-...|......+...|++.+|.++|+.-.+.
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 34467899999999999887756778888899999999999999999875433
No 269
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.43 E-value=26 Score=30.78 Aligned_cols=99 Identities=8% Similarity=-0.121 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHhccCCCC--CchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh
Q 042593 60 YVNTALGDMYVSLGFLKDSSKLFDELPER--NLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137 (352)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 137 (352)
.+...+...|.+.|++++|.+.|.++... +... .+.. |-.++..+...+++..+...+++......-.+|..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~---kid~---~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~ 205 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA---KIDV---MLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWE 205 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS---HHHH---HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH---HHHH---HHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHH
Confidence 35556777777777777777777776531 1110 0111 55666777777777777777777632222223322
Q ss_pred hHHH----HHHHHHhCCChhhHHHHHHHHHh
Q 042593 138 TILA----VLPAIWKNGEVRNCQLIHGYGEK 164 (352)
Q Consensus 138 t~~~----ll~~~~~~~~~~~a~~~~~~~~~ 164 (352)
..+. -...+...+++..|...|-+...
T Consensus 206 ~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 206 RRNRYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 2111 11122345666666666655443
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=72.43 E-value=41 Score=28.02 Aligned_cols=134 Identities=11% Similarity=0.035 Sum_probs=84.6
Q ss_pred cchHHHHHHHHHHhCCCCc-hhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHH
Q 042593 40 PNLGTQLHAVFSKVGFQSH-VYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNE 118 (352)
Q Consensus 40 ~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~ 118 (352)
++..+.-++.-++.|---. ..+|.++..-|.+.+++++|.+++..- ...+.+.|+...
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~g---------------------a~~ll~~~Q~~s 71 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQG---------------------ALSFLKAKQGGS 71 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------------HHHHHHCCCcch
Confidence 4444444555555552222 357888888899999999999885432 233455677666
Q ss_pred HHHH----HHHhHhccCCCCChhhHHHHHHHHHhCCChh-hHHHHHHHHH----hcCC--CCCchhhHHHHHHHHHhhCC
Q 042593 119 ALAL----FRRMAACEYTEPSEITILAVLPAIWKNGEVR-NCQLIHGYGE----KRGF--NAFDIHVSNCLIDTYAKCGC 187 (352)
Q Consensus 119 a~~~----~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~~--~~~~~~~~~~li~~~~~~g~ 187 (352)
|-++ .+.. ...+++++......++..+.....-+ .-.++.+.+. +.|- .. ++.....+...|.+.|+
T Consensus 72 a~DLa~llvev~-~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~G-dp~LH~~~a~~~~~e~~ 149 (312)
T 2wpv_A 72 GTDLIFYLLEVY-DLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFG-DPYLHNTIGSKLLEGDF 149 (312)
T ss_dssp HHHHHHHHHHHH-HHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTC-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCC-CHHHHHHHHHHHhhcCC
Confidence 5554 4444 55677888887777777766533211 2233444443 3322 22 66778889999999999
Q ss_pred hHHHHHHHH
Q 042593 188 IFSASKLFE 196 (352)
Q Consensus 188 ~~~a~~~~~ 196 (352)
+.+|+..|-
T Consensus 150 ~~~A~~H~i 158 (312)
T 2wpv_A 150 VYEAERYFM 158 (312)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998775
No 271
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=72.29 E-value=48 Score=28.70 Aligned_cols=129 Identities=7% Similarity=-0.089 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh---hhHHHHHHHHHhCC-ChhhHHHHHHHHHhcCCCCCchhhH---
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE---ITILAVLPAIWKNG-EVRNCQLIHGYGEKRGFNAFDIHVS--- 175 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~---~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~--- 175 (352)
...|...|.+.|+.++..+++.....--+.-|-. .....++..+.... ..+.-.++..+..+.... ...+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~--~~r~flr~ 99 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ--EKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH--TTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 6678889999999999999998882222222222 24667777776643 333333444443332111 11223
Q ss_pred ---HHHHHHHHhhCChHHHHHHHHHhccC--CC-----CHhhHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 176 ---NCLIDTYAKCGCIFSASKLFEDTSVD--RK-----NLVSWTTIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 176 ---~~li~~~~~~g~~~~a~~~~~~~~~~--~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
..++..|...|++.+|.+++.++.+. .. -+..+-.-+..|...+++.++...+.....
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 26889999999999999998887653 21 134566677889999999999999988654
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=71.92 E-value=25 Score=25.23 Aligned_cols=60 Identities=13% Similarity=0.041 Sum_probs=45.7
Q ss_pred HHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHH
Q 042593 118 EALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLID 180 (352)
Q Consensus 118 ~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 180 (352)
+..+-++.+ -...+.|+.....+.+++|.+.+|+..|.++++-++..- .+ ...+|..+++
T Consensus 71 ElrrglN~l-~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~-~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTL-VGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GP-HKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHH-TTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TT-CTTHHHHHHH
T ss_pred HHHHHHHHH-hccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CC-chhhHHHHHH
Confidence 344455555 555678999999999999999999999999999887543 33 4556777754
No 273
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=71.68 E-value=36 Score=27.05 Aligned_cols=82 Identities=9% Similarity=0.020 Sum_probs=42.7
Q ss_pred HHHhcCCHHHHHHHHHHhHhccCCCCC---hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchh--hHHHHHHHHH
Q 042593 109 GYSRMNRSNEALALFRRMAACEYTEPS---EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIH--VSNCLIDTYA 183 (352)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~ 183 (352)
..+..|+.+-+..+++.. |..++ ..-.+.+ ...+..++......+.+.+.+.|..+ +.. .-...+...+
T Consensus 154 ~A~~~~~~~~v~~Ll~~~----~~~~~~~~~~g~t~l-~~a~~~~~~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~ 227 (285)
T 1wdy_A 154 DAAEKGHVEVLKILLDEM----GADVNACDNMGRNAL-IHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAV 227 (285)
T ss_dssp HHHHHTCHHHHHHHHHTS----CCCTTCCCTTSCCHH-HHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHhc----CCCCCccCCCCCCHH-HHHHHccccchHHHHHHHHHHcCCCC-CCcCCCCCcHHHHHH
Confidence 344556665544444432 22222 2222233 33345566666667777777777654 322 1123455566
Q ss_pred hhCChHHHHHHHH
Q 042593 184 KCGCIFSASKLFE 196 (352)
Q Consensus 184 ~~g~~~~a~~~~~ 196 (352)
+.|+.+-+..+++
T Consensus 228 ~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 228 EKKHLGLVQRLLE 240 (285)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHh
Confidence 6777777776666
No 274
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=71.50 E-value=26 Score=25.32 Aligned_cols=71 Identities=14% Similarity=-0.054 Sum_probs=38.4
Q ss_pred CCChhhHHHHHHHHHhCCCh---hhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCC
Q 042593 133 EPSEITILAVLPAIWKNGEV---RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKN 204 (352)
Q Consensus 133 ~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 204 (352)
.|+..|--...-++.+..+. ..+..+++.+...+... .....-.|.-++.+.|++++|.+..+.+.+..|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~-~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR-RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST-HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc-hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 45555544455555555433 34556666665544322 2333334555666677777777766666555553
No 275
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=71.13 E-value=28 Score=25.48 Aligned_cols=84 Identities=13% Similarity=0.074 Sum_probs=50.7
Q ss_pred hHHHHHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCC--HHHHHHHHHHHHhcCCCCCcchhh-hHhHH
Q 042593 174 VSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGM--GKEAVENFERMQKVGLKPNRSWRI-GEEGL 249 (352)
Q Consensus 174 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~-~~~a~ 249 (352)
..+.++.=|...|+.++|.+.++++... .....+...+..++-+.++ .+.+..++..+.+.|+-+...... +....
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl 90 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 90 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 4567788888889999999999988422 1123444555556655432 466788888887766544333322 44444
Q ss_pred HHHHHHHH
Q 042593 250 KFFDKMVE 257 (352)
Q Consensus 250 ~~~~~m~~ 257 (352)
+.++.+.-
T Consensus 91 ~~ldDl~l 98 (152)
T 2ion_A 91 NEIPDINL 98 (152)
T ss_dssp HHHHHHHH
T ss_pred HhChHhcc
Confidence 44444443
No 276
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=70.79 E-value=26 Score=24.99 Aligned_cols=71 Identities=14% Similarity=0.011 Sum_probs=51.4
Q ss_pred CCCCCchhhHHHHHHHHHhhCCh---HHHHHHHHHhccCCC--CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Q 042593 166 GFNAFDIHVSNCLIDTYAKCGCI---FSASKLFEDTSVDRK--NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239 (352)
Q Consensus 166 ~~~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 239 (352)
+..| +..+--.+..+++++.+. .+++.+++++.+..| ....+--|.-++.+.|++++|.+..+.+.+. .|+
T Consensus 35 ~~~v-s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~ 110 (134)
T 3o48_A 35 GPTA-TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 110 (134)
T ss_dssp GGGS-CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTT
T ss_pred CCCC-ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCC
Confidence 3344 666666667788887754 457888888765555 2455666778899999999999999999974 454
No 277
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=69.55 E-value=35 Score=25.99 Aligned_cols=110 Identities=14% Similarity=0.088 Sum_probs=47.8
Q ss_pred chhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh
Q 042593 58 HVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI 137 (352)
Q Consensus 58 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 137 (352)
+...-...+.++.+.++.+....+.+.+..++... -...+.++.+.++.+.. ..+.++.. .++..
T Consensus 63 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~v----------r~~a~~aL~~~~~~~~~-~~L~~~l~----d~~~~ 127 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDERAVEPLIKALKDEDGWV----------RQSAAVALGQIGDERAV-EPLIKALK----DEDWF 127 (211)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHH----------HHHHHHHHHHHCCGGGH-HHHHHHTT----CSSHH
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHH----------HHHHHHHHHHhCcHHHH-HHHHHHHh----CCCHH
Confidence 44444444555555555444444444444444433 33344444455543322 22222211 34544
Q ss_pred hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCC
Q 042593 138 TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC 187 (352)
Q Consensus 138 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 187 (352)
.-...+.++.+.++.+.. ..+..+.+ .+ +..+-...+.++.+.+.
T Consensus 128 vr~~a~~aL~~~~~~~~~-~~L~~~l~---d~-~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 128 VRIAAAFALGEIGDERAV-EPLIKALK---DE-DGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHHHHHHHCCGGGH-HHHHHHTT---CS-SHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHcCCHHHH-HHHHHHHc---CC-CHHHHHHHHHHHHHhCc
Confidence 555555555555543322 22222222 12 44445555555555554
No 278
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=69.48 E-value=88 Score=30.64 Aligned_cols=123 Identities=12% Similarity=0.020 Sum_probs=73.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhH--HHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhH--HHHHHH
Q 042593 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITI--LAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVS--NCLIDT 181 (352)
Q Consensus 106 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~ 181 (352)
|...++..|+-+....++..+ ... .+..+. ..+.-++...|+-+.+..+.+.+.... .| ....- .++.-+
T Consensus 496 LGli~vGTgn~~ai~~LL~~~-~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp-~vRygaa~alglA 569 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYS-QET---QHGNITRGLAVGLALINYGRQELADDLITKMLASD-ES-LLRYGGAFTIALA 569 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHH-HHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHH
T ss_pred HhhhhcccCCHHHHHHHHHHH-hcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHH
Confidence 344455677877777777776 322 133333 333344457899999999998887642 22 22211 234456
Q ss_pred HHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 182 YAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 182 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
|+-.|+.....+++..+... ..++.-...+.-++...|+.+.+.++++.+.+.
T Consensus 570 yaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~ 623 (963)
T 4ady_A 570 YAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKS 623 (963)
T ss_dssp TTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGC
T ss_pred hcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhc
Confidence 77888988888899887644 234443333444555567766667776655543
No 279
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=68.02 E-value=12 Score=31.16 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=33.7
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCC--hHHHHHHHHHhc
Q 042593 139 ILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC--IFSASKLFEDTS 199 (352)
Q Consensus 139 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~~~ 199 (352)
...++.-|...|+.++|.+.++++..-... ...+...+..++-+.++ .+.+.+++..+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~--~e~V~~ai~~alE~~~~~~re~~~~LL~~L~ 229 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH--HELVYEAIIMVLESTGESTFKMILDLLKSLW 229 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH--HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch--HHHHHHHHHHHHccCChHHHHHHHHHHHHHH
Confidence 557777777788888888888777532111 23344444444444332 344555565553
No 280
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=64.97 E-value=63 Score=27.23 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcCChhHHHHHhccCCCCC
Q 042593 62 NTALGDMYVSLGFLKDSSKLFDELPERN 89 (352)
Q Consensus 62 ~~~li~~~~~~g~~~~a~~~~~~m~~~~ 89 (352)
...++.-|...|+.++|...++++..|.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~ 41 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPS 41 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcc
Confidence 3456777777788888888888886654
No 281
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=63.74 E-value=39 Score=24.42 Aligned_cols=67 Identities=12% Similarity=-0.016 Sum_probs=50.0
Q ss_pred chhhHHHHHHHHHhhCCh---HHHHHHHHHhccCCC--CHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Q 042593 171 DIHVSNCLIDTYAKCGCI---FSASKLFEDTSVDRK--NLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239 (352)
Q Consensus 171 ~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 239 (352)
+..+--.+..++.++.+. .++..+++++....| .....--|.-++.+.|++++|.+..+.+.+. .|+
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 666666777788888754 467788888765555 2344455677899999999999999999984 454
No 282
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=62.23 E-value=38 Score=23.86 Aligned_cols=84 Identities=13% Similarity=0.074 Sum_probs=51.0
Q ss_pred hHHHHHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCC--HHHHHHHHHHHHhcCCCCCcchhh-hHhHH
Q 042593 174 VSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGM--GKEAVENFERMQKVGLKPNRSWRI-GEEGL 249 (352)
Q Consensus 174 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~-~~~a~ 249 (352)
..+.++.=|...|+.++|.+.++++... .........+..++-+.++ .+.+..++..+.+.|+-+...... +....
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~ 88 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 88 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 3457788888889999999999988422 1123444555556665542 467788888888776544333322 44444
Q ss_pred HHHHHHHH
Q 042593 250 KFFDKMVE 257 (352)
Q Consensus 250 ~~~~~m~~ 257 (352)
+.++.+.-
T Consensus 89 ~~l~Dl~l 96 (129)
T 2nsz_A 89 NEIPDINL 96 (129)
T ss_dssp HHHHHHHH
T ss_pred hhChHhhc
Confidence 44444443
No 283
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=61.92 E-value=1e+02 Score=28.58 Aligned_cols=204 Identities=11% Similarity=-0.043 Sum_probs=111.5
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhc------------------CChhHHHHHhcc
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL------------------GFLKDSSKLFDE 84 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~------------------g~~~~a~~~~~~ 84 (352)
+...=+....+....|+..+|....+.+=..| ...+..+..|+..+.+. |+...|..+...
T Consensus 101 ~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~ 179 (618)
T 1qsa_A 101 TTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQ 179 (618)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 55556667777878888766655555444334 33444555555555543 444445555554
Q ss_pred CCCC-------------CchhHHHHHHHHH-------hHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHH
Q 042593 85 LPER-------------NLVTWNVIITGLV-------KWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144 (352)
Q Consensus 85 m~~~-------------~~~~~~~~i~~~~-------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~ 144 (352)
+... ++......+.... .+...+.-+.+ .+.+.|...+....+... .+......+-.
T Consensus 180 l~~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~--~~~~~~~~~~~ 256 (618)
T 1qsa_A 180 MPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQ--LNEDQIQELRD 256 (618)
T ss_dssp CCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTT--CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccC--CCHHHHHHHHH
Confidence 4210 1111111110000 01112233333 377899999988833332 33333333333
Q ss_pred HH----HhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCC
Q 042593 145 AI----WKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHG 219 (352)
Q Consensus 145 ~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~ 219 (352)
.. ...+...++...+........ +.....-.+....+.|+++.|.+.|+.|..... ...-.--+..++...|
T Consensus 257 ~ia~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g 333 (618)
T 1qsa_A 257 IVAWRLMGNDVTDEQAKWRDDAIMRSQ---STSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERG 333 (618)
T ss_dssp HHHHTSCSTTCCHHHHHHHHHHHHTCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCChHHHHHHHhccccCC---ChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcC
Confidence 33 334434556666665443332 333333444555678999999999999965532 3444556667788899
Q ss_pred CHHHHHHHHHHHHh
Q 042593 220 MGKEAVENFERMQK 233 (352)
Q Consensus 220 ~~~~a~~~~~~m~~ 233 (352)
+.++|..+|..+..
T Consensus 334 ~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 334 REAEAKEILHQLMQ 347 (618)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998764
No 284
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=61.09 E-value=36 Score=25.14 Aligned_cols=72 Identities=7% Similarity=0.033 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhc--CCCCCchhhHHHHHHHHHhhCChH
Q 042593 116 SNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKR--GFNAFDIHVSNCLIDTYAKCGCIF 189 (352)
Q Consensus 116 ~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~ 189 (352)
.+.+++-+.+..+..|++++. .-..++..+...+..-.|.++++.+.+. +... +..|.-.-++.+...|-+.
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~i-s~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNV-GIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCC-CHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHCCCEE
Confidence 456666666666778887754 3456677777777888899999999887 6555 4444445557788777543
No 285
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=60.20 E-value=42 Score=23.65 Aligned_cols=65 Identities=12% Similarity=0.019 Sum_probs=44.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCC--hhhHHHHHHHHHhcCCCC
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGE--VRNCQLIHGYGEKRGFNA 169 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~ 169 (352)
.+.++.-|...|+.++|.+.++++ ..... ....+...+..++-+.++ .+.+..++..+.+.|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL-~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKEL-EVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH-TCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh-CCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 677889999999999999999999 42111 112344455556655432 456778888887777664
No 286
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=59.70 E-value=57 Score=25.00 Aligned_cols=52 Identities=6% Similarity=-0.100 Sum_probs=29.0
Q ss_pred HHHHhcCCcchHHHHHHHHHHhCCCCchh--hHHHHHHHHHhcCChhHHHHHhccCCC
Q 042593 32 RTCVTLSYPNLGTQLHAVFSKVGFQSHVY--VNTALGDMYVSLGFLKDSSKLFDELPE 87 (352)
Q Consensus 32 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~ 87 (352)
...++.|+.+. ++.+.+.|..++.. .-...+...+..|+.+-+..+++.-..
T Consensus 14 ~~A~~~g~~~~----~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~ 67 (240)
T 3eu9_A 14 VKATQYGIYER----CRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAI 67 (240)
T ss_dssp HHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHHHcCChHH----HHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCc
Confidence 34556666544 44445555544332 122345666777888777777776543
No 287
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=56.93 E-value=42 Score=22.59 Aligned_cols=78 Identities=15% Similarity=0.121 Sum_probs=49.1
Q ss_pred ChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 042593 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230 (352)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 230 (352)
..++|..+-+-+...+. ...+--+-+..+...|++++|..+.+.. ..||...|-+|.. .+.|..+++..-+.+
T Consensus 21 ~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~--c~pdlepw~ALce--~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGN--PWPALEPWFALCE--WHLGLGAALDRRLAG 93 (115)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTC--CCGGGHHHHHHHH--HHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCC--CCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 45666666666655543 1122223344566788888888877766 3778877776654 566777777777777
Q ss_pred HHhcC
Q 042593 231 MQKVG 235 (352)
Q Consensus 231 m~~~~ 235 (352)
+..+|
T Consensus 94 la~sg 98 (115)
T 2uwj_G 94 LGGSS 98 (115)
T ss_dssp HHTCS
T ss_pred HHhCC
Confidence 76654
No 288
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=56.36 E-value=43 Score=22.56 Aligned_cols=78 Identities=14% Similarity=0.152 Sum_probs=46.5
Q ss_pred ChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 042593 151 EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFER 230 (352)
Q Consensus 151 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 230 (352)
..++|..+-+-+...+. ...+--+-+..+...|++++|..+.+.. ..||...|-+|.. .+.|..+++..-+.+
T Consensus 22 ~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~--c~pdlepw~ALce--~rlGl~s~le~rL~~ 94 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE---EEAVQLIRLSSLMNRGDYASALQQGNKL--AYPDLEPWLALCE--YRLGLGSALESRLNR 94 (116)
T ss_dssp CHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHHHHTTS--CCGGGHHHHHHHH--HHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCC--CCchHHHHHHHHH--HhcccHHHHHHHHHH
Confidence 45666666665555443 1112223344566777888887777766 3777777776654 455666666666666
Q ss_pred HHhcC
Q 042593 231 MQKVG 235 (352)
Q Consensus 231 m~~~~ 235 (352)
+..+|
T Consensus 95 la~sg 99 (116)
T 2p58_C 95 LARSQ 99 (116)
T ss_dssp HTTCC
T ss_pred HHhCC
Confidence 66554
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=54.92 E-value=59 Score=23.73 Aligned_cols=47 Identities=9% Similarity=0.080 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhc
Q 042593 153 RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199 (352)
Q Consensus 153 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 199 (352)
++...+|..|...|+...-...|......+...|++.+|.++|+.-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34677777777777665456666677777777777777777776543
No 290
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=54.30 E-value=33 Score=25.07 Aligned_cols=65 Identities=12% Similarity=0.019 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCC--hhhHHHHHHHHHhcCCCC
Q 042593 103 WTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGE--VRNCQLIHGYGEKRGFNA 169 (352)
Q Consensus 103 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~ 169 (352)
.+.++.-|...|+.++|.+.++++ ..... ....+...+..++-+.++ .+.+..++..+.+.|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL-~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKEL-EVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH-TCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh-CCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 677889999999999999999999 42111 112344455556655432 455777888887777654
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=53.90 E-value=57 Score=25.85 Aligned_cols=90 Identities=14% Similarity=0.024 Sum_probs=53.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhc-cCCCC----ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHH
Q 042593 105 GIIDGYSRMNRSNEALALFRRMAAC-EYTEP----SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179 (352)
Q Consensus 105 ~li~~~~~~~~~~~a~~~~~~m~~~-~~~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 179 (352)
--++.+....++++|.+++++.++. .+.++ +.......+..-.....-.-+..+.+++.. .. +...-...+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~-~~~~~r~~v 98 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SN-EIVHLKSGT 98 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CS-SHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cC-CHHHHHHHH
Confidence 3456788899999999999887322 12221 112233334433333333445555555533 22 455556677
Q ss_pred HHHHhhCChHHHHHHHHHh
Q 042593 180 DTYAKCGCIFSASKLFEDT 198 (352)
Q Consensus 180 ~~~~~~g~~~~a~~~~~~~ 198 (352)
..+.+.|+-++|.++|-+.
T Consensus 99 ~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHH
Confidence 8888888888888888654
No 292
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=53.35 E-value=78 Score=24.65 Aligned_cols=69 Identities=12% Similarity=0.120 Sum_probs=44.6
Q ss_pred hHhHHHHHHHHHHhcCCCCCh------hhHHHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHHHhccc
Q 042593 245 GEEGLKFFDKMVEECEVLPDI------KHYGCLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSY 313 (352)
Q Consensus 245 ~~~a~~~~~~m~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~ 313 (352)
++.|..+|+.+.+...+..+. ..-...+..|.+.|.+++|.+++++.-...++..-....+....+..+
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd 162 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKN 162 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccC
Confidence 888999999988872221111 112345677899999999999999887663344434444444455444
No 293
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=52.95 E-value=24 Score=29.79 Aligned_cols=149 Identities=14% Similarity=0.081 Sum_probs=76.9
Q ss_pred cHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcC-ChhHHHHHhccCCCCCchhHHHHHHHHHhHH
Q 042593 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLG-FLKDSSKLFDELPERNLVTWNVIITGLVKWT 104 (352)
Q Consensus 26 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~ 104 (352)
....++.-|...|+.++|...++.+...... ......++..+.-+.. ..+.+.+++..+.+.+..+...
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~--------- 82 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQ--------- 82 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHH---------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHH---------
Confidence 3567888899999999998888877432211 1122223333332211 2344566666666666666333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHH-hCCChhh---HHHHHHHHHhcCCCCCchhhHHHHHH
Q 042593 105 GIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIW-KNGEVRN---CQLIHGYGEKRGFNAFDIHVSNCLID 180 (352)
Q Consensus 105 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~-~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~li~ 180 (352)
+..|+ .+..+.++++ ..+ .|....+..-+-+.+ ..|-+.. ...+.+.+.+.|. .......++.
T Consensus 83 -~~~Gf------~~~~~~l~Dl-~lD--iP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~---~~~fl~~vl~ 149 (339)
T 1ug3_A 83 -YYQGL------YEILELAEDM-EID--IPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGK---AASLLLEILG 149 (339)
T ss_dssp -HHHHH------HHHHHHHHHH-TTT--CTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTC---HHHHHHHHHH
T ss_pred -HHHHH------HHHHhhChHh-hcC--ccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccch---HHHHHHHHHH
Confidence 33332 2223333333 211 255554444433332 3333332 1122233334443 3455666777
Q ss_pred HHHhhCChHHHHHHHHH
Q 042593 181 TYAKCGCIFSASKLFED 197 (352)
Q Consensus 181 ~~~~~g~~~~a~~~~~~ 197 (352)
.+.+....+.+.++|.+
T Consensus 150 ~l~~~~g~~~l~~~~~~ 166 (339)
T 1ug3_A 150 LLCKSMGPKKVGTLWRE 166 (339)
T ss_dssp HHHHHHCHHHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHH
Confidence 77777778888888876
No 294
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=52.50 E-value=71 Score=23.91 Aligned_cols=121 Identities=14% Similarity=0.106 Sum_probs=69.7
Q ss_pred CchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh
Q 042593 57 SHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE 136 (352)
Q Consensus 57 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 136 (352)
++...-...+.++++.++.+....+.+.+..++... -...+.++.+.++.+....+...+ . .++.
T Consensus 57 ~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~v----------r~~a~~aL~~~~~~~~~~~L~~~l-~----d~~~ 121 (201)
T 3ltj_A 57 EDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWV----------RQSAAVALGQIGDERAVEPLIKAL-K----DEDW 121 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHH----------HHHHHHHHHHHCCGGGHHHHHHHT-T----CSSH
T ss_pred CCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHH----------HHHHHHHHHHhCcHHHHHHHHHHH-c----CCCH
Confidence 455555566667777776665556666566666554 445556666666654333333333 2 4566
Q ss_pred hhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHh
Q 042593 137 ITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDT 198 (352)
Q Consensus 137 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 198 (352)
..-...+.++.+.++.+.. ..+..+.+ .+ +..+-...+.++.+.|+. ++...+..+
T Consensus 122 ~vr~~a~~aL~~~~~~~~~-~~L~~~l~---d~-~~~vr~~A~~aL~~~~~~-~~~~~L~~~ 177 (201)
T 3ltj_A 122 FVRIAAAFALGEIGDERAV-EPLIKALK---DE-DGWVRQSAADALGEIGGE-RVRAAMEKL 177 (201)
T ss_dssp HHHHHHHHHHHHHTCGGGH-HHHHHHTT---CS-SHHHHHHHHHHHHHHCSH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHH-HHHHHHHc---CC-CHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence 6666777777777764433 33333333 23 666667777788877764 344444443
No 295
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=50.42 E-value=29 Score=20.62 Aligned_cols=49 Identities=16% Similarity=0.032 Sum_probs=26.8
Q ss_pred HHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCc
Q 042593 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNR 240 (352)
Q Consensus 189 ~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 240 (352)
++..+.+.+| .|+.....+--..-...|+.+.|++.+-+|...+..|+.
T Consensus 10 ee~l~~L~em---FP~ld~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 10 EEDLKAIQDM---FPNMDQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHH---CSSSCHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHH---CCCCCHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 4455555555 443322221111124566788888888877776666653
No 296
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=49.10 E-value=88 Score=23.98 Aligned_cols=51 Identities=6% Similarity=-0.019 Sum_probs=28.8
Q ss_pred HHHHHhcCCcchHHHHHHHHHHhCCCCchhh--HHHHHHHHHhcCChhHHHHHhccC
Q 042593 31 IRTCVTLSYPNLGTQLHAVFSKVGFQSHVYV--NTALGDMYVSLGFLKDSSKLFDEL 85 (352)
Q Consensus 31 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m 85 (352)
+...+..|+.+ +++.+.+.|..++... -...+...+..|+.+-+..+++.-
T Consensus 15 L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 67 (237)
T 3b7b_A 15 LHAAAEAGHVD----ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67 (237)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred HHHHHHcCcHH----HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence 45556667654 4455556665544321 123455556678887777777653
No 297
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=47.52 E-value=93 Score=23.83 Aligned_cols=123 Identities=7% Similarity=-0.113 Sum_probs=64.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhccCCCCChh--hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchh--hHHHHHHH
Q 042593 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEI--TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIH--VSNCLIDT 181 (352)
Q Consensus 106 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~ 181 (352)
.+...+..|+.+.+..+++.+ ...+..++.. .-.+.+...+..|+.+-+ +.+.+.|..+ +.. .-...+..
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~g~~~-~~~~~~g~t~l~~ 85 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLF-QQGGRELDIYNNLRQTPLHLAVITTLPSVV----RLLVTAGASP-MALDRHGQTAAHL 85 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH-HHTTCCSCCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHH-HhcCCCCCcccccCCCHHHHHHHcCCHHHH----HHHHHcCCCc-cccCCCCCCHHHH
Confidence 455566778888877777766 5555555543 122445555566776544 4444455443 221 11234455
Q ss_pred HHhhCChHHHHHHHHHhccC-----CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Q 042593 182 YAKCGCIFSASKLFEDTSVD-----RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239 (352)
Q Consensus 182 ~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 239 (352)
.+..|+.+-+..+++..... ..+....+.+.. .+..|+. ++++.+.+.|..++
T Consensus 86 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~-A~~~~~~----~~~~~Ll~~g~~~~ 143 (241)
T 1k1a_A 86 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV-AVNTECQ----ETVQLLLERGADID 143 (241)
T ss_dssp HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHH-HHHHTCH----HHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHH-HHHcCCH----HHHHHHHHcCCCcc
Confidence 56778877777777765321 223333333333 3344554 34445555565554
No 298
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=47.36 E-value=87 Score=24.54 Aligned_cols=48 Identities=4% Similarity=0.059 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhc
Q 042593 152 VRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTS 199 (352)
Q Consensus 152 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 199 (352)
.+....+|..|...|+...-...|......+...|++.+|.++|+.-.
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 177 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGK 177 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 367788999998888876567788888888888888888888888643
No 299
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=47.15 E-value=93 Score=23.71 Aligned_cols=172 Identities=13% Similarity=0.028 Sum_probs=82.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCC--chhhHHHHHHHHH
Q 042593 106 IIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAF--DIHVSNCLIDTYA 183 (352)
Q Consensus 106 li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~ 183 (352)
.+...++.|+.+....+++.- ......+|..-.+. +...+..|+.+-+..++ +.|..+. +..-+ ..+...+
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~-L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~-t~L~~A~ 81 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILAD-KSLATRTDQDSRTA-LHWACSAGHTEIVEFLL----QLGVPVNDKDDAGW-SPLHIAA 81 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHC-GGGGGCCCTTSCCH-HHHHHHHTCHHHHHHHH----HTTCCSCCCCTTSC-CHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhc-hhhhhcCCCCCCCH-HHHHHHcCcHHHHHHHH----HhCCCCCCcCCCCC-CHHHHHH
Confidence 345567789999888888765 22111233333333 33445567765554444 4454331 22222 2344556
Q ss_pred hhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh---------hHhHHHHHH
Q 042593 184 KCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI---------GEEGLKFFD 253 (352)
Q Consensus 184 ~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---------~~~a~~~~~ 253 (352)
..|+.+-+..+++.-... .+|..-.+.+ ...+..|+.+- ++.+.+.|..++..... ...-.++.+
T Consensus 82 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~ 156 (231)
T 3aji_A 82 SAGXDEIVKALLVKGAHVNAVNQNGCTPL-HYAASKNRHEI----AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVH 156 (231)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HcCHHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHH----HHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence 678877666666542211 2232223333 33445566553 44445566665543222 122234444
Q ss_pred HHHHhcCCCCChhh--HHHHHHHHHHcCChhHHHHHHhc
Q 042593 254 KMVEECEVLPDIKH--YGCLIDILERAGRLEQAEEVASG 290 (352)
Q Consensus 254 ~m~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~ 290 (352)
.+.+. |..++... -..-+...++.|+.+-+..+++.
T Consensus 157 ~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 194 (231)
T 3aji_A 157 ILLFY-KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194 (231)
T ss_dssp HHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHhc-CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC
Confidence 55554 55443221 11233444566666655555544
No 300
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=46.95 E-value=62 Score=27.13 Aligned_cols=189 Identities=10% Similarity=-0.019 Sum_probs=95.1
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhh--HHHHHHHHHhcCChhHHHHHhccCCCCCc-hhHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYV--NTALGDMYVSLGFLKDSSKLFDELPERNL-VTWNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~i~~ 99 (352)
|..-. +.|...+..|+.+.+ +.+.+.|..++... -...+...+..|+.+-+.-+++.-...+. .-
T Consensus 17 d~~g~-t~L~~Aa~~g~~~~v----~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g------- 84 (364)
T 3ljn_A 17 DDENM-EKIHVAARKGQTDEV----RRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHG------- 84 (364)
T ss_dssp CHHHH-HHHHHHHHHTCHHHH----HHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTT-------
T ss_pred CCCCC-CHHHHHHHcCCHHHH----HHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCC-------
Confidence 44434 445566677886544 44555666554422 12345566778888888888776554332 11
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh--------------------hhHHHHHHHHHhCC--ChhhHHH
Q 042593 100 LVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE--------------------ITILAVLPAIWKNG--EVRNCQL 157 (352)
Q Consensus 100 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~--------------------~t~~~ll~~~~~~~--~~~~a~~ 157 (352)
++ .+...+..|+.+-+..+++.- ...|..|+. .-. +.+...+..| +.+-+..
T Consensus 85 ---~t-~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~~~v~~ 158 (364)
T 3ljn_A 85 ---QK-PIHLAVMANKTDLVVALVEGA-KERGQMPESLLNECDEREVNEIGSHVKHCKGQ-TALHWCVGLGPEYLEMIKI 158 (364)
T ss_dssp ---BC-HHHHHHHTTCHHHHHHHHHHH-HHHTCCHHHHHTCCCCCCEEEETTEEEEESCC-CHHHHHHHSCGGGHHHHHH
T ss_pred ---CC-HHHHHHHcCCHHHHHHHHHhc-cccCCCHHHHHhhcchHhhhhhccccCCCCCC-CHHHHHHHcCCchHHHHHH
Confidence 22 223345667777777776664 333333322 112 3344445556 5544444
Q ss_pred HHHHHHhcCCCC--CchhhHHHHHHHHHhhCChHHHHHHHHHhcc-----C-CCCHhhHHHHHHHHHcCCCHHHHHHHHH
Q 042593 158 IHGYGEKRGFNA--FDIHVSNCLIDTYAKCGCIFSASKLFEDTSV-----D-RKNLVSWTTIISGFAMHGMGKEAVENFE 229 (352)
Q Consensus 158 ~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~-~~~~~~~~~li~~~~~~~~~~~a~~~~~ 229 (352)
++ +.|..+ .+..-. ..+...+..|+.+-+..+++.-.. . ..|..-.+.| ...+..|+.+ +.+
T Consensus 159 Ll----~~ga~~~~~d~~g~-t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~----~v~ 228 (364)
T 3ljn_A 159 LV----QLGASPTAKDKADE-TPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL-HWAILINWED----VAM 228 (364)
T ss_dssp HH----HHTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT-HHHHTTTCHH----HHH
T ss_pred HH----HcCCCCcccCCCCC-CHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH-HHHHHcCCHH----HHH
Confidence 44 444433 021222 334455677888777777765322 1 1222222222 2334556654 444
Q ss_pred HHHhcCCCCC
Q 042593 230 RMQKVGLKPN 239 (352)
Q Consensus 230 ~m~~~~~~p~ 239 (352)
.+.+.|..++
T Consensus 229 ~Ll~~gad~~ 238 (364)
T 3ljn_A 229 RFVEMGIDVN 238 (364)
T ss_dssp HHHTTTCCTT
T ss_pred HHHHcCCCCC
Confidence 4555666554
No 301
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=45.98 E-value=26 Score=26.02 Aligned_cols=74 Identities=8% Similarity=0.079 Sum_probs=53.7
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCC-chhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITG 99 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~ 99 (352)
|+.-....|.-.-.. +...++|..|..+|+-. -...|......+-..|++.+|.++|+.-.+.+......|...
T Consensus 62 D~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~ 136 (164)
T 2wvi_A 62 DPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQ 136 (164)
T ss_dssp CHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHH
T ss_pred CHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 666666666333222 55889999999998865 456788889999999999999999998776555544444443
No 302
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=45.65 E-value=1.1e+02 Score=24.28 Aligned_cols=188 Identities=9% Similarity=-0.072 Sum_probs=99.3
Q ss_pred CcccHHHHHHHHHhcCCcch-HHHHHHHHHHh-CCCCchhhHHHHHHHHHhcCC-----hhHHHHHhc-cCCCCCchhHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNL-GTQLHAVFSKV-GFQSHVYVNTALGDMYVSLGF-----LKDSSKLFD-ELPERNLVTWN 94 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~-a~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~-----~~~a~~~~~-~m~~~~~~~~~ 94 (352)
+...-...+.++++.|.... ...++..+... --.++...-...+.++.+.+. .+.+...+. .+..++...
T Consensus 67 ~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~d~~~~v-- 144 (280)
T 1oyz_A 67 NYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQSQITAFDKSTNV-- 144 (280)
T ss_dssp SHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHH--
T ss_pred CHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHHHhhCCCHHH--
Confidence 55566677778888775433 33333333210 013566666666666666542 233444433 344566554
Q ss_pred HHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCC-hhhHHHHHHHHHhcCCCCCchh
Q 042593 95 VIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGE-VRNCQLIHGYGEKRGFNAFDIH 173 (352)
Q Consensus 95 ~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~ 173 (352)
-...+.++...|+.+ +...+.++.. .++...-...+.++.+.+. -+.+...+..+.+ .+ +..
T Consensus 145 --------R~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~---d~-~~~ 207 (280)
T 1oyz_A 145 --------RRATAFAISVINDKA-TIPLLINLLK----DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ---DK-NEE 207 (280)
T ss_dssp --------HHHHHHHHHTC---C-CHHHHHHHHT----CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT---CS-CHH
T ss_pred --------HHHHHHHHHhcCCHH-HHHHHHHHHc----CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc---CC-CHH
Confidence 444555666666543 3444444423 3565555666666666552 2334444444332 23 666
Q ss_pred hHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 174 VSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 174 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
+-...+.++.+.|+......+...+.. ++ .-...+.++.+.|. .++...+.++.+.
T Consensus 208 vR~~A~~aL~~~~~~~~~~~L~~~l~d--~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~ 263 (280)
T 1oyz_A 208 VRIEAIIGLSYRKDKRVLSVLCDELKK--NT--VYDDIIEAAGELGD-KTLLPVLDTMLYK 263 (280)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHHTS--SS--CCHHHHHHHHHHCC-GGGHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHhhHHHHHHHhcC--cc--HHHHHHHHHHhcCc-hhhhHHHHHHHhc
Confidence 777788888888876555555555532 34 22344566666666 3566666666553
No 303
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=45.30 E-value=2.3e+02 Score=27.79 Aligned_cols=129 Identities=10% Similarity=-0.026 Sum_probs=77.4
Q ss_pred HHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHH
Q 042593 65 LGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLP 144 (352)
Q Consensus 65 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~ 144 (352)
++..+...|..+-|.++...+.. ++.. -..+..+|...|++++|...|++. . .|+..+......
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~----------~yv~gr~~L~~ge~~~A~~~F~kA-A-~gl~~~~~~~~~--- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIA----------VYLKALIYLKSKEAVKAVRCFKTT-S-LVLYSHTSQFAV--- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHH----------HHHHHHHHHHTTCHHHHHHHHHTC-C-CTTCSSCCSCGG---
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHH----------HHHHHHHHHHcCCHHHHHHHHHHH-h-hhcccCcccccc---
Confidence 66777778888888877766654 3322 224567889999999999999988 4 333322211100
Q ss_pred HHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccC----CCC--HhhHHHHHHHHHcC
Q 042593 145 AIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVD----RKN--LVSWTTIISGFAMH 218 (352)
Q Consensus 145 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~--~~~~~~li~~~~~~ 218 (352)
.+....++.... .. .. ...-|..++..+-+.+-++.+.++-+...+. .++ ...|+.++.+.+..
T Consensus 880 -------~~~~~~ll~~~e-~~-~~-~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 880 -------LREFQEIAEKYH-HQ-NL-LSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp -------GHHHHHHHHHTT-TC-SH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred -------hhhhhhccCccc-cc-ch-hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 011111111111 11 11 3457888999999999999888887765433 222 24677777776654
Q ss_pred C
Q 042593 219 G 219 (352)
Q Consensus 219 ~ 219 (352)
|
T Consensus 950 g 950 (950)
T 4gq2_M 950 G 950 (950)
T ss_dssp C
T ss_pred C
Confidence 4
No 304
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=42.95 E-value=60 Score=20.33 Aligned_cols=63 Identities=6% Similarity=-0.045 Sum_probs=44.2
Q ss_pred HHHHHHhhccCCCCCCCCCcccHHHHHHHHHhcC-CcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChh
Q 042593 5 KQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLS-YPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76 (352)
Q Consensus 5 ~~M~~~~~~~~g~~P~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 76 (352)
+.|.+ .|+++ +..- ..++..+...+ ..-.+.++++.+.+.+...+..|.-..++.+.+.|-+.
T Consensus 6 ~~l~~-----~g~~~---t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 6 TALKK-----AGLKV---TLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp HHHHH-----TTCCC---CHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHH-----cCCCc---CHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 45666 67666 6543 45667776664 56778899999988775567777777788888877553
No 305
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=42.70 E-value=1e+02 Score=22.83 Aligned_cols=20 Identities=15% Similarity=0.017 Sum_probs=12.6
Q ss_pred HHHHHhcCChhHHHHHhccC
Q 042593 66 GDMYVSLGFLKDSSKLFDEL 85 (352)
Q Consensus 66 i~~~~~~g~~~~a~~~~~~m 85 (352)
+...++.|+.+-+..+++.-
T Consensus 43 L~~A~~~~~~~~v~~Ll~~g 62 (201)
T 3hra_A 43 LNIAVHNNDIEIAKALIDRG 62 (201)
T ss_dssp HHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcC
Confidence 44455667777777766653
No 306
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=41.81 E-value=51 Score=21.81 Aligned_cols=66 Identities=14% Similarity=-0.020 Sum_probs=44.6
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHH
Q 042593 44 TQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALA 121 (352)
Q Consensus 44 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~ 121 (352)
..+++.+.+.|+ .+......+-. .....+.+.|.++++.+..++... |..++.++...|+..-|..
T Consensus 24 ~~vld~L~~~~v-lt~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~~A----------f~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 24 DQLWDVLLSREL-FRPHMIEDIQR-AGSGSRRDQARQLIIDLETRGSQA----------LPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp TTTHHHHHHTTS-SCHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCTTH----------HHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHcCC-CCHHHHHHHHh-ccCCChHHHHHHHHHHHHHcChHH----------HHHHHHHHHHcCcHHHHHH
Confidence 347778888884 34444433322 111257899999999999988888 7888888877677665543
No 307
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=41.56 E-value=95 Score=23.46 Aligned_cols=201 Identities=8% Similarity=-0.145 Sum_probs=0.0
Q ss_pred ChhhHHHHHHhhccCCCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHH--HHHHHHHhcCChhHH
Q 042593 1 FLVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNT--ALGDMYVSLGFLKDS 78 (352)
Q Consensus 1 ~~~~~~M~~~~~~~~g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~~~~~g~~~~a 78 (352)
+++++.+.+ .|..+.......-.+.+...++.|+ .++++.+.+.|..++..... ..+...+..|+.+-+
T Consensus 4 ~~~i~~Ll~-----~g~~~~~~~d~~g~t~L~~A~~~g~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v 74 (223)
T 2f8y_A 4 PAVISDFIY-----QGASLHNQTDRTGETALHLAARYSR----SDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVF 74 (223)
T ss_dssp -CCEETTEE-----TTCCTTCCCTTTCCCHHHHHHHTTC----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHHHHH-----cCCCcccccCCCCCchHHHHHHcCC----HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHH
Q ss_pred HHHhccCCC----CCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh--hHHHHHHHHHhCCCh
Q 042593 79 SKLFDELPE----RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI--TILAVLPAIWKNGEV 152 (352)
Q Consensus 79 ~~~~~~m~~----~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--t~~~ll~~~~~~~~~ 152 (352)
..+++.-.. ++..- ++.+..+..... .++++.+ -..|..++.. .-.+.+...+..|+.
T Consensus 75 ~~Ll~~~~~~~~~~~~~g----------~t~L~~A~~~~~-----~~~~~~L-l~~g~~~~~~~~~g~t~L~~A~~~~~~ 138 (223)
T 2f8y_A 75 QILIRNRATDLDARMHDG----------TTPLILAARLAV-----EGMLEDL-INSHADVNAVDDLGKSALHWAAAVNNV 138 (223)
T ss_dssp HHHHHBTTSCTTCCCTTC----------CCHHHHHHHHTC-----HHHHHHH-HHTTCCTTCBCTTSCBHHHHHHHTTCH
T ss_pred HHHHHcCCCCcccCCCCC----------CcHHHHHHHhCc-----HHHHHHH-HHcCCCCcCcCCCCCcHHHHHHHcCCH
Q ss_pred hhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHH
Q 042593 153 RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFE 229 (352)
Q Consensus 153 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 229 (352)
+-+..+++. ...+.. ....-...+...++.|+.+-+.-+++.-......-..-.+.+...++.|+.+-+.-+.+
T Consensus 139 ~~v~~Ll~~--g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~ 212 (223)
T 2f8y_A 139 DAAVVLLKN--GANKDM-QNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212 (223)
T ss_dssp HHHHHHHHT--TCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHc--CCCCCC-cCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHH
No 308
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=40.75 E-value=99 Score=24.16 Aligned_cols=55 Identities=16% Similarity=0.033 Sum_probs=36.7
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHhCCCCchhh-------HHHHHHHHH--hcCChhHHHHHhcc
Q 042593 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYV-------NTALGDMYV--SLGFLKDSSKLFDE 84 (352)
Q Consensus 30 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-------~~~li~~~~--~~g~~~~a~~~~~~ 84 (352)
.+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 35566788999999999999888887666433 233433332 56777766666654
No 309
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=40.25 E-value=30 Score=20.58 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=18.6
Q ss_pred HHHHHHHHHhHhccCCCCChhhHHHHHHHH
Q 042593 117 NEALALFRRMAACEYTEPSEITILAVLPAI 146 (352)
Q Consensus 117 ~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~ 146 (352)
++|.+.|.+|++..++.| .-||...++.+
T Consensus 3 eEae~aF~~lL~~~~V~s-~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDS-TWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCS-SCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCC-CCcHHHHHHHh
Confidence 567777777766666543 34566666666
No 310
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=40.03 E-value=1.2e+02 Score=23.17 Aligned_cols=47 Identities=26% Similarity=0.188 Sum_probs=32.2
Q ss_pred hHHHHHHHHHhccCCCCHhh-H-----HHHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 188 IFSASKLFEDTSVDRKNLVS-W-----TTIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 188 ~~~a~~~~~~~~~~~~~~~~-~-----~~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
++.|+.+|+.+....++... - -..+..|.+.|.+++|.+++++....
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcC
Confidence 57788888888766543221 1 12355699999999999999996553
No 311
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=39.87 E-value=76 Score=20.62 Aligned_cols=63 Identities=6% Similarity=0.074 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHH
Q 042593 43 GTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEA 119 (352)
Q Consensus 43 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a 119 (352)
...+++.+.+.|+ .+...+..+-. .....++|.++++.+..++... |..++.++...+...-|
T Consensus 24 v~~lld~L~~~~v-lt~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~a----------f~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGF-LTISEEEKVRN---EPTQQQRAAMLIKMILKKDNDS----------YVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTS-SCHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHH----------HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHH----------HHHHHHHHHHcCHHHHH
Confidence 5678888888884 34444444333 3677899999999999888888 77777777776654433
No 312
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=39.13 E-value=1e+02 Score=24.83 Aligned_cols=165 Identities=13% Similarity=0.085 Sum_probs=83.9
Q ss_pred hhHHHHHHhhccCCCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhh--HHHHHHHHHhcCChhHHHH
Q 042593 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYV--NTALGDMYVSLGFLKDSSK 80 (352)
Q Consensus 3 ~~~~M~~~~~~~~g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~ 80 (352)
+.+.+.+ .|..| +...-.+.+...+..|+.+ +.+.+.+.|..++... -...+...+..|+.+-+.-
T Consensus 46 ~v~~Ll~-----~g~~~---~~~~g~t~L~~A~~~g~~~----~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~ 113 (285)
T 3kea_A 46 LVCTLLN-----AGALK---NLLENEFPLHQAATLEDTK----IVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKL 113 (285)
T ss_dssp HHHHHHH-----TTGGG---SCCTTCCHHHHHTTSSSCH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHh-----CCCCC---CCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence 4455555 55555 4333344566667777765 4455556676554321 1233555667888888887
Q ss_pred HhccCCC---CCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC-ChhhHHHHHHHHHhCCChhhHH
Q 042593 81 LFDELPE---RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEP-SEITILAVLPAIWKNGEVRNCQ 156 (352)
Q Consensus 81 ~~~~m~~---~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~ 156 (352)
+++.-.. ++..- |...+...+..|+.+-+..+++. |..+ +...-.+.+...+..|+.+-+.
T Consensus 114 Ll~~ga~~~~~~~~g----------~~t~L~~A~~~~~~~~v~~Ll~~-----g~~~~~~~~g~t~L~~A~~~g~~~~v~ 178 (285)
T 3kea_A 114 FVKKNWRLMFYGKTG----------WKTSFYHAVMLNDVSIVSYFLSE-----IPSTFDLAILLSCIHITIKNGHVDMMI 178 (285)
T ss_dssp HHHHCGGGGGCSSSG----------GGSHHHHHHHTTCHHHHHHHHTT-----SCTTCCCSTHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCCCCCccCCCC----------CCCHHHHHHHcCCHHHHHHHHhC-----CCccccccCCccHHHHHHHcChHHHHH
Confidence 7776332 22222 22334445566776544443332 2222 2213344455566778877776
Q ss_pred HHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHH
Q 042593 157 LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196 (352)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 196 (352)
.+++.-...... +..-.+..+...++.|+.+-+.-+++
T Consensus 179 ~Ll~~gad~n~~--~~~g~t~~L~~A~~~~~~~~v~~Ll~ 216 (285)
T 3kea_A 179 LLLDYMTSTNTN--NSLLFIPDIKLAIDNKDIEMLQALFK 216 (285)
T ss_dssp HHHHHHHHTCTT--CCCBCCTTHHHHHHHTCHHHHHHHTT
T ss_pred HHHHcCCCCCcc--cCCCCChHHHHHHHcCCHHHHHHHHH
Confidence 666553332222 22222223444556666554444433
No 313
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=38.26 E-value=1.1e+02 Score=22.04 Aligned_cols=63 Identities=6% Similarity=-0.044 Sum_probs=44.9
Q ss_pred HHHHHHhhccCCCCCCCCCcccHHHHHHHHHhcC-CcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChh
Q 042593 5 KQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLS-YPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76 (352)
Q Consensus 5 ~~M~~~~~~~~g~~P~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 76 (352)
+.|++ .|+++ +.. =..++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 6 ~~l~~-----~g~r~---T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKD-----AGLKV---TLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHH-----TTCCC---CHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHH-----cCCCC---CHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 45666 67776 544 345566666666 67889999999998876667777666678888888654
No 314
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=37.99 E-value=1.1e+02 Score=22.17 Aligned_cols=43 Identities=7% Similarity=0.201 Sum_probs=29.0
Q ss_pred HHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 042593 189 FSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231 (352)
Q Consensus 189 ~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 231 (352)
+.+.++|+.+-...-...+|.-++..+.+...+-+....|+.+
T Consensus 140 ~~~~~~f~~~D~d~dG~i~~~Ef~~~~~~~~~~~~~l~~~d~~ 182 (183)
T 1s6c_A 140 QHVDVFFQKMDKNKDGIVTLDEFLESXQEDDNIMRSLQLFQNV 182 (183)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHhcChHHHHHHHHhhcc
Confidence 5677777777544455677777777777776666777666653
No 315
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=37.54 E-value=1.9e+02 Score=24.56 Aligned_cols=116 Identities=14% Similarity=0.128 Sum_probs=71.2
Q ss_pred hHHHHHHHHHhhCChHHHHHHHHHhccCCC-CHhhHHHHHHHHHcCCC--HHHHHHHHHHHHhcCCCCCcchhh-hHhHH
Q 042593 174 VSNCLIDTYAKCGCIFSASKLFEDTSVDRK-NLVSWTTIISGFAMHGM--GKEAVENFERMQKVGLKPNRSWRI-GEEGL 249 (352)
Q Consensus 174 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~-~~~a~ 249 (352)
..+.++.=|...|+.++|.+.++++....- .......+..++-+.++ .+.+..++..+...|+-+...... +....
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 357888899999999999999999954321 23445555666665443 466888999988877655444433 55555
Q ss_pred HHHHHHHHhcCCCCChhhH-HHHHHHHHHcCChhHHHHHHhcCCCC
Q 042593 250 KFFDKMVEECEVLPDIKHY-GCLIDILERAGRLEQAEEVASGIPSQ 294 (352)
Q Consensus 250 ~~~~~m~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~ 294 (352)
..++.+.-. .|....+ ..++.-+...|-+.. .+...+..+
T Consensus 299 ~~ldDl~lD---iP~A~~~la~~varai~~g~l~~--~f~~~~p~r 339 (358)
T 3eiq_C 299 NEIPDINLD---VPHSYSVLERFVEECFQAGIISK--QLRDLCPSR 339 (358)
T ss_dssp HHHHHHHHH---CTTHHHHHHHHHHHHHHHTSSCH--HHHTTCCCC
T ss_pred HhccHhhcc---cccHHHHHHHHHHHHHHCCCCCH--HHHHhCccc
Confidence 555555543 3554443 344555555555443 344555443
No 316
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=37.42 E-value=55 Score=25.67 Aligned_cols=55 Identities=15% Similarity=-0.162 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHhCCCCch-------hhHHHHHHHHHhc---CChhHHHHHhcc
Q 042593 29 FLIRTCVTLSYPNLGTQLHAVFSKVGFQSHV-------YVNTALGDMYVSL---GFLKDSSKLFDE 84 (352)
Q Consensus 29 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~---g~~~~a~~~~~~ 84 (352)
+.+...++.|+.+.+..+++.+.+.|..++. .-.+. +...+.. |+.+-+..+++.
T Consensus 4 t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~-L~~A~~~~~~g~~~~v~~Ll~~ 68 (256)
T 2etb_A 4 DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTC-LMKAVLNLQDGVNACIMPLLQI 68 (256)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCH-HHHHHHTCBTTBCTTHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCH-HHHHHHccccchHHHHHHHHhc
Confidence 3466778889999999999999888876554 22333 4444455 777777666654
No 317
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.30 E-value=39 Score=26.50 Aligned_cols=71 Identities=8% Similarity=0.164 Sum_probs=51.9
Q ss_pred CcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCC-chhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHH
Q 042593 23 DSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQS-HVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVI 96 (352)
Q Consensus 23 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~ 96 (352)
|+.-....|. |++ ..+.+.++|..|..+||-. -...|......+-..|++.+|.++|+.-.+.......-|
T Consensus 116 D~RyLklWl~-Ya~--~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL 187 (223)
T 4aez_C 116 DVRYLRIWMQ-YVN--YIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRF 187 (223)
T ss_dssp CHHHHHHHHH-HHT--TCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHH
T ss_pred CHHHHHHHHH-HHH--ccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 5555555553 333 2467889999999998865 456789999999999999999999998766444444443
No 318
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=36.69 E-value=1.1e+02 Score=21.53 Aligned_cols=58 Identities=3% Similarity=-0.091 Sum_probs=41.0
Q ss_pred CCCCCCCCCcccHHHHHHHHHhcC-CcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChh
Q 042593 15 HSPLPPLFDSFTYSFLIRTCVTLS-YPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76 (352)
Q Consensus 15 ~g~~P~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 76 (352)
.|+++ +.. =..++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 12 ~g~r~---T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 12 AGLKV---TLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp TTCCC---CHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred CCCCC---CHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 66666 543 345666777666 67889999999998876667777666678888877654
No 319
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=36.24 E-value=1.8e+02 Score=24.00 Aligned_cols=106 Identities=14% Similarity=0.123 Sum_probs=63.6
Q ss_pred hHHHHHHHHHhhCChHHHHHHHHHhccCC-CCHhhHHHHHHHHHcCCC--HHHHHHHHHHHHhcCCCCCcchhh-hHhHH
Q 042593 174 VSNCLIDTYAKCGCIFSASKLFEDTSVDR-KNLVSWTTIISGFAMHGM--GKEAVENFERMQKVGLKPNRSWRI-GEEGL 249 (352)
Q Consensus 174 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~-~~~a~ 249 (352)
..+.++.=|...|+.++|.+.++++.... ........+..++-+.++ .+.+..++..+.+.|+-+...... +....
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~vl 247 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERIY 247 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 34678888999999999999999994321 123444555556655433 466788899988777655443333 44555
Q ss_pred HHHHHHHHhcCCCCChhhH-HHHHHHHHHcCChh
Q 042593 250 KFFDKMVEECEVLPDIKHY-GCLIDILERAGRLE 282 (352)
Q Consensus 250 ~~~~~m~~~~~~~p~~~~~-~~li~~~~~~g~~~ 282 (352)
+.++.+.-. -|+...+ ..++.-+...|-..
T Consensus 248 ~~l~Dl~lD---iP~A~~~la~~v~~ai~~g~l~ 278 (307)
T 2zu6_B 248 NEIPDINLD---VPHSYSVLERFVEECFQAGIIS 278 (307)
T ss_dssp HHHHHHHHH---CTTHHHHHHHHHHHHHHHTSSC
T ss_pred HhccHhhcc---cccHHHHHHHHHHHHHHCCCCC
Confidence 555554433 2544433 34444444555444
No 320
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=35.45 E-value=1.5e+02 Score=22.78 Aligned_cols=85 Identities=8% Similarity=0.071 Sum_probs=58.7
Q ss_pred hHHHHHhccCCC--CCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCCh-hhHHHHHHHHHhCCCh
Q 042593 76 KDSSKLFDELPE--RNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSE-ITILAVLPAIWKNGEV 152 (352)
Q Consensus 76 ~~a~~~~~~m~~--~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~t~~~ll~~~~~~~~~ 152 (352)
+.+.+.|..... .|+.--.. |-..++.+ ..+....+.++|..| ...|+--.. .-|......+...|++
T Consensus 61 Erc~~~F~~~~rYkND~RYLkl-------Wl~Ya~~~-~~~~~~~p~~if~~L-~~~~IG~~~AlfYe~wA~~lE~~g~~ 131 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKI-------WIWYINLF-LSNNFHESENTFKYM-FNKGIGTKLSLFYEEFSKLLENAQFF 131 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHH-------HHHHHHHH-STTCHHHHHHHHHHH-HHHTSSTTBHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcccccccCCHHHHHH-------HHHHHHhh-cccccCCHHHHHHHH-HHCCCcHHHHHHHHHHHHHHHHcCCH
Confidence 444555555443 45443222 44444443 244477999999999 666665443 4688888889999999
Q ss_pred hhHHHHHHHHHhcCCCC
Q 042593 153 RNCQLIHGYGEKRGFNA 169 (352)
Q Consensus 153 ~~a~~~~~~~~~~~~~~ 169 (352)
.+|..+|+.-.+.+-.|
T Consensus 132 ~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 132 LEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHHHcCCcc
Confidence 99999999999988777
No 321
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=35.41 E-value=1.2e+02 Score=21.76 Aligned_cols=58 Identities=2% Similarity=-0.087 Sum_probs=38.2
Q ss_pred CCCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChh
Q 042593 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76 (352)
Q Consensus 15 ~g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 76 (352)
.|+++ +.. =..++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+.
T Consensus 21 ~g~r~---T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 21 NGLKN---SKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp CC--C---HHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCC---CHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 56665 433 34556666666677888899998888775566666555677787777543
No 322
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=35.19 E-value=88 Score=21.86 Aligned_cols=49 Identities=14% Similarity=0.044 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChh
Q 042593 28 SFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76 (352)
Q Consensus 28 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 76 (352)
..++..+...+..-.|.++++.+.+.+...+..|.-..++.+...|-+.
T Consensus 14 ~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 14 AAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 3566777777778899999999998876667777666788888888653
No 323
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=34.92 E-value=1.2e+02 Score=21.58 Aligned_cols=58 Identities=7% Similarity=-0.105 Sum_probs=38.6
Q ss_pred CCCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChh
Q 042593 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76 (352)
Q Consensus 15 ~g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 76 (352)
.|+++ +.. =..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 16 ~g~r~---T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 16 TGVRI---TPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp TTCCC---CHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCC---CHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 66666 443 34455666666677788888888887765556666556677777777543
No 324
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=34.68 E-value=1.5e+02 Score=23.42 Aligned_cols=91 Identities=11% Similarity=-0.022 Sum_probs=58.8
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhc--CCCCC---chhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHH
Q 042593 141 AVLPAIWKNGEVRNCQLIHGYGEKR--GFNAF---DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGF 215 (352)
Q Consensus 141 ~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~ 215 (352)
--+..+....++++|..++++..+. +.... ........+..-.....-.-+..+.+++.. .++...-...+..+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~-~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Confidence 3456788889999999988877643 12210 112223334444444444555566666633 66677777788999
Q ss_pred HcCCCHHHHHHHHHHHH
Q 042593 216 AMHGMGKEAVENFERMQ 232 (352)
Q Consensus 216 ~~~~~~~~a~~~~~~m~ 232 (352)
.+.|+-++|.++|=+..
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 99999999999986653
No 325
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=34.44 E-value=66 Score=22.88 Aligned_cols=51 Identities=8% Similarity=-0.049 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhH
Q 042593 27 YSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKD 77 (352)
Q Consensus 27 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 77 (352)
=..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-+.+
T Consensus 16 R~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 16 RAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp HHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 345677777777788999999999988766677776666888888886543
No 326
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=33.97 E-value=1.3e+02 Score=21.51 Aligned_cols=58 Identities=14% Similarity=-0.030 Sum_probs=34.6
Q ss_pred hccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCCh
Q 042593 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188 (352)
Q Consensus 128 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 188 (352)
+..|++++.. -..++..+...+ .-.|.++++.+.+.+... +..|.-.-++.+...|-+
T Consensus 11 ~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~i-s~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 11 RQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGI-NISTVYRTLELLEELGLV 68 (145)
T ss_dssp HTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTC-CHHHHHHHHHHHHHHTSE
T ss_pred HHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCC-CHhHHHHHHHHHHHCCcE
Confidence 6666666543 223444444445 567888888887776655 444444445667766643
No 327
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=33.92 E-value=1.3e+02 Score=21.51 Aligned_cols=57 Identities=9% Similarity=0.034 Sum_probs=39.9
Q ss_pred CCCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChh
Q 042593 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLK 76 (352)
Q Consensus 15 ~g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 76 (352)
.|+++ +.. =..++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-+.
T Consensus 13 ~g~r~---T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 13 RGYRL---TPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp TTCCC---CHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred cCCCc---CHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 67777 544 344556666666 7789999999988876667766555677888877543
No 328
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=33.67 E-value=1.4e+02 Score=22.52 Aligned_cols=183 Identities=15% Similarity=0.079 Sum_probs=86.1
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCCCCc------hhHHHHHHHHHhH
Q 042593 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPERNL------VTWNVIITGLVKW 103 (352)
Q Consensus 30 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------~~~~~~i~~~~~~ 103 (352)
.+...++.|+.+.+..+++.-.......+..-. ..+...+..|+.+-+..+++.-..++. .- +
T Consensus 5 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g----------~ 73 (228)
T 2dzn_A 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGR-IPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSG----------W 73 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTS----------C
T ss_pred HHHHHHHhCCHHHHHHHHhcCccccccCCCCCC-CHHHHHHHcCCHHHHHHHHhccccccccccCCCCC----------C
Confidence 355667778876665555432221111222222 345556678888888888887633221 22 2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhccC--CCC---ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchh--hHH
Q 042593 104 TGIIDGYSRMNRSNEALALFRRMAACEY--TEP---SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIH--VSN 176 (352)
Q Consensus 104 ~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ 176 (352)
+. +...+..|+.+-+..+++ .| ..+ +..-. +.+...+..|+.+-+..++ +.|..+ +.. .-.
T Consensus 74 t~-L~~A~~~~~~~~~~~Ll~-----~g~~~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll----~~g~~~-~~~~~~g~ 141 (228)
T 2dzn_A 74 TP-FHIACSVGNLEVVKSLYD-----RPLKPDLNKITNQGV-TCLHLAVGKKWFEVSQFLI----ENGASV-RIKDKFNQ 141 (228)
T ss_dssp CH-HHHHHHHCCHHHHHHHHS-----SSSCCCTTCCCTTCC-CHHHHHHHTTCHHHHHHHH----HTTCCS-CCCCTTSC
T ss_pred CH-HHHHHHcCCHHHHHHHHh-----CCCCcccccCCcCCC-CHHHHHHHcCCHhHHHHHH----HcCCCc-cccCCCCC
Confidence 22 233445666654443332 22 222 22222 2334445667765544444 445443 211 112
Q ss_pred HHHHHHHhhCChHHHHHHHHHhccC--CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Q 042593 177 CLIDTYAKCGCIFSASKLFEDTSVD--RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239 (352)
Q Consensus 177 ~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 239 (352)
..+...++.|+.+-+.-+++.-... ..|..-.+. +...+..|+.+-+..+++ +.|..++
T Consensus 142 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~-L~~A~~~~~~~~v~~Ll~---~~ga~~~ 202 (228)
T 2dzn_A 142 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP-LFHALAEGHGDAAVLLVE---KYGAEYD 202 (228)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCH-HHHHHHTTCHHHHHHHHH---HHCCCSC
T ss_pred CHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCH-HHHHHHcCCHHHHHHHHH---hcCCCCC
Confidence 3345556778877666666543111 223222222 333455666655444442 3355444
No 329
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=33.54 E-value=29 Score=20.65 Aligned_cols=24 Identities=8% Similarity=-0.071 Sum_probs=18.0
Q ss_pred cCCHHHHHHHHHHhHhccCCCCCh
Q 042593 113 MNRSNEALALFRRMAACEYTEPSE 136 (352)
Q Consensus 113 ~~~~~~a~~~~~~m~~~~~~~p~~ 136 (352)
..|++.|...|.++.....++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 458999999999994455566554
No 330
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=33.51 E-value=1.7e+02 Score=22.75 Aligned_cols=89 Identities=11% Similarity=0.098 Sum_probs=49.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhccCCCCChh-------hHHHHHHHHH--hCCChhhHHHHHHHHHhcC---------CC
Q 042593 107 IDGYSRMNRSNEALALFRRMAACEYTEPSEI-------TILAVLPAIW--KNGEVRNCQLIHGYGEKRG---------FN 168 (352)
Q Consensus 107 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-------t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~~ 168 (352)
+...++.|+.+....+++.+ ...+..++.. -.+.+..+.. +.|+.+-+..+++.-...+ +.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 87 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFL-LTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFR 87 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHH-HHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBC
T ss_pred HHHHHHhCCHHHHHHHHHHH-HhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccc
Confidence 34456788888877787766 4444444432 2334444432 6688887777777643311 11
Q ss_pred CCchhhHHHHHHHHHhhCChHHHHHHHHH
Q 042593 169 AFDIHVSNCLIDTYAKCGCIFSASKLFED 197 (352)
Q Consensus 169 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 197 (352)
..+..-. ..+...+..|+.+-+.-+++.
T Consensus 88 ~~d~~g~-t~L~~A~~~g~~~~v~~Ll~~ 115 (260)
T 3jxi_A 88 DVYYRGQ-TALHIAIERRCKHYVELLVEK 115 (260)
T ss_dssp CSSEESB-CHHHHHHHTTCHHHHHHHHHT
T ss_pred ccccCCC-CHHHHHHHcCCHHHHHHHHhC
Confidence 1011222 234455667888777777664
No 331
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=33.37 E-value=1.9e+02 Score=28.38 Aligned_cols=129 Identities=11% Similarity=-0.094 Sum_probs=75.2
Q ss_pred HHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh-hHhHHHHHHHH
Q 042593 177 CLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI-GEEGLKFFDKM 255 (352)
Q Consensus 177 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~~~a~~~~~~m 255 (352)
.++..+...|..+-|.++..-+ +.++..--.+..+|...|++++|.+.|++.. .|+..+..... ......++...
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~---~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWL---NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGC---CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHHhcHHHHHHHHHhhc---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccCcc
Confidence 3666777788887776655444 3344333456778999999999999998854 34544333322 12222222211
Q ss_pred HHhcCCCCChhhHHHHHHHHHHcCChhHHHHHHhcCCCC-C-CCc----hhhHHHHHHHHhcc
Q 042593 256 VEECEVLPDIKHYGCLIDILERAGRLEQAEEVASGIPSQ-I-TNV----VVWRTGFLRLLINS 312 (352)
Q Consensus 256 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-~~~----~~~~~li~~~~~~g 312 (352)
. .-.....-|..++..+-+.|-++-+.++-+..... . .|. ..|..++++.+..|
T Consensus 891 e---~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 891 H---HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp T---TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred c---ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 1 11112346788999999999988887665443322 1 122 35666666665543
No 332
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=32.93 E-value=3e+02 Score=25.44 Aligned_cols=242 Identities=10% Similarity=-0.003 Sum_probs=120.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhH
Q 042593 60 YVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITI 139 (352)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~ 139 (352)
..-+..+..+.+.+++......+.. . |+.... =.....+....|+..+|.....++ =..| ......+
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~-p~~~~~---------~c~~~~A~~~~G~~~~a~~~~~~l-W~~~-~~~p~~c 139 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-K-PGTTEA---------QCNYYYAKWNTGQSEEAWQGAKEL-WLTG-KSQPNAC 139 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-C-CSSHHH---------HHHHHHHHHHTTCHHHHHHHHHHH-HSCS-SCCCTHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-C-CCCHHH---------HHHHHHHHHHcCChhHHHHHHHHH-HhCC-CCCcHHH
Confidence 3445566777788888888887776 3 433321 122344566678877777777776 3333 2234456
Q ss_pred HHHHHHHHhCCChhhHH--HHHHHHHhcC-----------CCCCch-hhHHHHHHHHHhhCChHHHHHHHHHhccCCCCH
Q 042593 140 LAVLPAIWKNGEVRNCQ--LIHGYGEKRG-----------FNAFDI-HVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNL 205 (352)
Q Consensus 140 ~~ll~~~~~~~~~~~a~--~~~~~~~~~~-----------~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 205 (352)
..++..+.+.|.+.... .=+..+...| +.+ +. .....++..+. +...+....... .++.
T Consensus 140 ~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~-~~~~~a~~~~al~~---~p~~~~~~~~~~---~~~~ 212 (618)
T 1qsa_A 140 DKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPA-DYQTIASAIISLAN---NPNTVLTFARTT---GATD 212 (618)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCG-GGHHHHHHHHHHHH---CGGGHHHHHHHS---CCCH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCH-HHHHHHHHHHHHHh---ChHhHHHHHhcc---CCCh
Confidence 67777777666554321 1111111221 111 11 11111221111 112222222111 1221
Q ss_pred h---hHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCCCcchhh-------------hHhHHHHHHHHHHhcCCCCChhhH
Q 042593 206 V---SWTTIISGFAMHGMGKEAVENFERMQKVG-LKPNRSWRI-------------GEEGLKFFDKMVEECEVLPDIKHY 268 (352)
Q Consensus 206 ~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~-------------~~~a~~~~~~m~~~~~~~p~~~~~ 268 (352)
. .+...+.-+.+. +.+.|...+....+.. +.+...... ..++...+...... .++....
T Consensus 213 ~~~~~~~~~~~rlar~-d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 288 (618)
T 1qsa_A 213 FTRQMAAVAFASVARQ-DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLI 288 (618)
T ss_dssp HHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHH
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHH
Confidence 1 122223333443 6788888888776533 222111111 22445555554332 2333344
Q ss_pred HHHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHH-HHHHHHhcccccCcccccccch
Q 042593 269 GCLIDILERAGRLEQAEEVASGIPSQITNVVVWRT-GFLRLLINSYFFSPITLNSQRL 325 (352)
Q Consensus 269 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-li~~~~~~g~~~~a~~~~~~~~ 325 (352)
...+....+.|+++.|...|+.|.....+..-|.. +..++...|+.++|..++.+..
T Consensus 289 e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 289 ERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 45555566789999999999998765222233332 2345567788888877766654
No 333
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=32.29 E-value=1.7e+02 Score=22.30 Aligned_cols=19 Identities=11% Similarity=0.015 Sum_probs=10.6
Q ss_pred HHHHHhcCChhHHHHHhcc
Q 042593 66 GDMYVSLGFLKDSSKLFDE 84 (352)
Q Consensus 66 i~~~~~~g~~~~a~~~~~~ 84 (352)
+...+..|+.+-+..+++.
T Consensus 15 L~~A~~~g~~~~v~~Ll~~ 33 (237)
T 3b7b_A 15 LHAAAEAGHVDICHMLVQA 33 (237)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHcCcHHHHHHHHHc
Confidence 3444555666665555554
No 334
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=32.13 E-value=2.4e+02 Score=24.10 Aligned_cols=233 Identities=11% Similarity=0.019 Sum_probs=98.7
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHH--HHHHHhcCChhHHHHHhccCCCC---CchhHHHHHHHHHhH
Q 042593 29 FLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTAL--GDMYVSLGFLKDSSKLFDELPER---NLVTWNVIITGLVKW 103 (352)
Q Consensus 29 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~i~~~~~~ 103 (352)
+.+...+..|+.+ +++.+.+.|..++......- +...+..|+.+-+..+++.-... +..- .
T Consensus 16 t~L~~Aa~~g~~~----~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g----------~ 81 (437)
T 1n11_A 16 TPLHVASFMGHLP----IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD----------Q 81 (437)
T ss_dssp CHHHHHHHHTCHH----HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTS----------C
T ss_pred CHHHHHHHCCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC----------C
Confidence 3455566667654 44444555666654332211 33445566666666666543222 2111 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChh--hHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHH
Q 042593 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEI--TILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDT 181 (352)
Q Consensus 104 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 181 (352)
+ .+...+..|+.+-+.-+++. |..|+.. .-.+.+...++.|+.+.+..+++.-...... +..-+ ..+..
T Consensus 82 t-~L~~A~~~g~~~~v~~Ll~~-----ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~--~~~g~-t~L~~ 152 (437)
T 1n11_A 82 T-PLHCAARIGHTNMVKLLLEN-----NANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACM--TKKGF-TPLHV 152 (437)
T ss_dssp C-HHHHHHHHTCHHHHHHHHHH-----TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCC--CTTSC-CHHHH
T ss_pred C-HHHHHHHCCCHHHHHHHHhC-----CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCC--CCCCC-CHHHH
Confidence 1 22334455665544333332 2222221 1112333444556665555444432111111 11111 23444
Q ss_pred HHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCcchhh---------hHhHHHH
Q 042593 182 YAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPNRSWRI---------GEEGLKF 251 (352)
Q Consensus 182 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---------~~~a~~~ 251 (352)
.+..|+.+-+..+++.-... ..+....+. +...+..|+.+ +++.+.+.|..++..... ...-.++
T Consensus 153 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 227 (437)
T 1n11_A 153 AAKYGKVRVAELLLERDAHPNAAGKNGLTP-LHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEV 227 (437)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCSSCCCH-HHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCCCCCCCCCH-HHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence 55667766665555532111 111111122 23334455543 444455555555433221 1222344
Q ss_pred HHHHHHhcCCCCChhh--HHHHHHHHHHcCChhHHHHHHhc
Q 042593 252 FDKMVEECEVLPDIKH--YGCLIDILERAGRLEQAEEVASG 290 (352)
Q Consensus 252 ~~~m~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~ 290 (352)
.+.+.+. |..++... -...+...+..|+.+-+..+++.
T Consensus 228 ~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 267 (437)
T 1n11_A 228 ARSLLQY-GGSANAESVQGVTPLHLAAQEGHAEMVALLLSK 267 (437)
T ss_dssp HHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHc-CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhc
Confidence 4555554 44433221 11223344566776666666654
No 335
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=31.86 E-value=2.4e+02 Score=24.07 Aligned_cols=75 Identities=8% Similarity=0.013 Sum_probs=39.7
Q ss_pred hhhHHHHHHhhccCCCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchh--hHHHHHHHHHhcCChhHHH
Q 042593 2 LVYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVY--VNTALGDMYVSLGFLKDSS 79 (352)
Q Consensus 2 ~~~~~M~~~~~~~~g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~a~ 79 (352)
++++.+.+ +|..|...|.. ..+.+...++.|+.+ +.+.+.+.|..++.. .-...+...+..|+.+-+.
T Consensus 28 ~~v~~Ll~-----~g~~~~~~~~~-~~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~ 97 (437)
T 1n11_A 28 PIVKNLLQ-----RGASPNVSNVK-VETPLHMAARAGHTE----VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVK 97 (437)
T ss_dssp HHHHHHHH-----TTCCSCCSSSC-CCCHHHHHHHHTCHH----HHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHHHHHH-----cCCCCCCCCCC-CCCHHHHHHHcCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence 34555666 56666222222 234555666677765 444445555444321 1223455566778887777
Q ss_pred HHhccCC
Q 042593 80 KLFDELP 86 (352)
Q Consensus 80 ~~~~~m~ 86 (352)
-+++.-.
T Consensus 98 ~Ll~~ga 104 (437)
T 1n11_A 98 LLLENNA 104 (437)
T ss_dssp HHHHHTC
T ss_pred HHHhCCC
Confidence 7776543
No 336
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=31.82 E-value=56 Score=23.12 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=8.7
Q ss_pred HHHhcCChhHHHHHhcc
Q 042593 68 MYVSLGFLKDSSKLFDE 84 (352)
Q Consensus 68 ~~~~~g~~~~a~~~~~~ 84 (352)
..++.|+.+.+..+++.
T Consensus 8 ~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 8 GAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 33444555555555554
No 337
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=31.45 E-value=1.1e+02 Score=20.08 Aligned_cols=65 Identities=14% Similarity=-0.032 Sum_probs=35.1
Q ss_pred HHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHH
Q 042593 157 LIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVE 226 (352)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 226 (352)
.++..+.+.|+- +......+- ........+.|.++++.+....| ..|..++.++...|+..-|..
T Consensus 25 ~vld~L~~~~vl--t~~~~e~I~-~~~~~t~~~~ar~Lld~L~~rG~--~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 25 QLWDVLLSRELF--RPHMIEDIQ-RAGSGSRRDQARQLIIDLETRGS--QALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp TTHHHHHHTTSS--CHHHHHHHH-TSTTCCHHHHHHHHHHHHTTSCT--THHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHcCCC--CHHHHHHHH-hccCCChHHHHHHHHHHHHHcCh--HHHHHHHHHHHHcCcHHHHHH
Confidence 355556666554 333332221 10011456777788887754333 467777777776666555543
No 338
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=31.36 E-value=1.9e+02 Score=22.70 Aligned_cols=115 Identities=8% Similarity=0.060 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhHhccC-CCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHH-hhC-------
Q 042593 116 SNEALALFRRMAACEY-TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA-KCG------- 186 (352)
Q Consensus 116 ~~~a~~~~~~m~~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g------- 186 (352)
...+..+|..+ ...+ -..+..-|..++..+......+....+|+.+-..+-...+..-+..++..+. ..|
T Consensus 128 ~~~~~~~f~~~-D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~Ef~~~l~~~~~~~g~~~~~~~ 206 (256)
T 2jul_A 128 TTYAHFLFNAF-DADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPIL 206 (256)
T ss_dssp HHHHHHHHHHS-SCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHHHHTCCSSSSCBCHHHHHHHHHHHHHHCCCCCSCCS
T ss_pred HHHHHHHHHHh-ccCCCCcCcHHHHHHHHHHHhccChHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHhCCCCCccc
Confidence 34566777777 3322 1223333444444444333344555566554332211113333333333322 114
Q ss_pred ----ChHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 042593 187 ----CIFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231 (352)
Q Consensus 187 ----~~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 231 (352)
.-+.+.++|+.+-.......+|.-++..+.+...+-+++..|+.+
T Consensus 207 ~~~~~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 207 REDAPLEHVERFFQKMDRNQDGVVTIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp CCCCHHHHHHHHHHHSCCSTTCSBCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHCCCCCCcEeHHHHHHHHHhCHHHHHHHHhhccc
Confidence 235677778877544555678888888888888888888887764
No 339
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=31.14 E-value=1e+02 Score=21.53 Aligned_cols=46 Identities=20% Similarity=0.230 Sum_probs=26.2
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCC
Q 042593 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGC 187 (352)
Q Consensus 141 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 187 (352)
.++..+...+..-.|.++++.+.+.+... +..|.-..++.+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i-s~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENI-GLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCC-CHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCC-CHhhHHHHHHHHHHCCC
Confidence 34555555555666777777776665544 44444344566666554
No 340
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=30.65 E-value=1.9e+02 Score=22.53 Aligned_cols=23 Identities=17% Similarity=0.060 Sum_probs=12.8
Q ss_pred HHHHHhhCChHHHHHHHHHhccC
Q 042593 179 IDTYAKCGCIFSASKLFEDTSVD 201 (352)
Q Consensus 179 i~~~~~~g~~~~a~~~~~~~~~~ 201 (352)
+-.|.+.|.+++|.+++++....
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHhcchHHHHHHHHHHhcC
Confidence 33455566666666666655433
No 341
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=30.47 E-value=94 Score=22.05 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=28.6
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCCh
Q 042593 141 AVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188 (352)
Q Consensus 141 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 188 (352)
.++..+...+..-.|.++++.+.+.+... +..|.-.-++.+...|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~i-s~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAV-GLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHCCCE
Confidence 45555656556667777777777766555 444444445666666643
No 342
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=30.20 E-value=62 Score=20.46 Aligned_cols=39 Identities=10% Similarity=0.186 Sum_probs=25.1
Q ss_pred HHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHH
Q 042593 193 KLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFERM 231 (352)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 231 (352)
.++.++..-+|++.||+-+.+.+-+..-..+++.+.+++
T Consensus 24 ~LL~kIPnLPpgVnTW~qI~el~qkk~i~~~~m~iik~i 62 (81)
T 2ko4_A 24 QLLQRIPNIPPNINTWQQVTALAQQKLLTPQDMEAAKEV 62 (81)
T ss_dssp HHHTTSSSCCTTTCBHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred HHHhhCCCCCCCcchHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345555545788888888777655555456666666654
No 343
>1us7_B HSP90 CO-chaperone CDC37; chaperone CO-chaperone regulation, ATP-binding, H shock,; 2.3A {Homo sapiens} SCOP: a.205.1.1 PDB: 2k5b_B 2w0g_A
Probab=30.10 E-value=1.3e+02 Score=24.26 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHhcc
Q 042593 60 YVNTALGDMYVSLGFLKDSSKLFDE 84 (352)
Q Consensus 60 ~~~~~li~~~~~~g~~~~a~~~~~~ 84 (352)
..|..++.-|+.-.++++..+++.+
T Consensus 40 ~k~e~~lk~Fa~i~~y~dS~~FL~~ 64 (265)
T 1us7_B 40 EKYEKQIKHFGMLRRWDDSQKYLSD 64 (265)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHh
Confidence 3455666677766777777777665
No 344
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=29.88 E-value=2.1e+02 Score=22.78 Aligned_cols=189 Identities=8% Similarity=-0.133 Sum_probs=70.2
Q ss_pred cHHHHHHHHHhcCCcchHHHHHHHHHH---------hCCC-CchhhHHHHHHHHHhcCChhHHHHHhccCCCCCchhHHH
Q 042593 26 TYSFLIRTCVTLSYPNLGTQLHAVFSK---------VGFQ-SHVYVNTALGDMYVSLGFLKDSSKLFDELPERNLVTWNV 95 (352)
Q Consensus 26 ~~~~ll~~~~~~g~~~~a~~~~~~m~~---------~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 95 (352)
...+.+...+..|+.+.+.++.....+ .++. .|..- ...+...+..|+.+-+..+++.-...+......
T Consensus 14 ~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g-~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g 92 (285)
T 3d9h_A 14 LVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSD-WSPMHEAAIHGHQLSLRNLISQGWAVNIITADH 92 (285)
T ss_dssp ----------------------------CCSEECCCCTTCSSSCCS-CCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTC
T ss_pred HHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccC-CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence 456667777788887777765444322 1111 11111 234556677888888888877543322111000
Q ss_pred HHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCC---hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCch
Q 042593 96 IITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPS---EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDI 172 (352)
Q Consensus 96 ~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 172 (352)
++. +...+..|+.+-+..+++. |..++ ..-.+. +...+..|+.+-+. .+.+.|..+...
T Consensus 93 -------~t~-L~~A~~~g~~~~v~~Ll~~-----ga~~~~~~~~g~t~-L~~A~~~~~~~~v~----~Ll~~g~~~~~~ 154 (285)
T 3d9h_A 93 -------VSP-LHEACLGGHLSCVKILLKH-----GAQVNGVTADWHTP-LFNACVSGSWDCVN----LLLQHGASVQPE 154 (285)
T ss_dssp -------CCH-HHHHHHTTCHHHHHHHHHT-----TCCSSCCCTTCCCH-HHHHHHHTCHHHHH----HHHHTTCCSSCS
T ss_pred -------CCH-HHHHHHCCcHHHHHHHHHC-----CCCCCCCCCCCCCH-HHHHHHcCHHHHHH----HHHHCCCCCCCC
Confidence 222 2334456766554444332 33332 222223 33344556655444 344444433111
Q ss_pred hhHHHHHHHHHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Q 042593 173 HVSNCLIDTYAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKP 238 (352)
Q Consensus 173 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 238 (352)
..-...+...+..|+.+-+..+++.-... ..|..-.+.| ...+..|+.+ +++.+.+.|..+
T Consensus 155 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L-~~A~~~~~~~----~v~~Ll~~ga~~ 216 (285)
T 3d9h_A 155 SDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPL-YLACENQQRA----CVKKLLESGADV 216 (285)
T ss_dssp CTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHH-HHHHHTTCHH----HHHHHHHTTCCT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH-HHHHHcCcHH----HHHHHHHCCCCC
Confidence 11223455566777777666666542211 1222222333 3334556654 334444445544
No 345
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=28.47 E-value=83 Score=19.11 Aligned_cols=46 Identities=7% Similarity=-0.142 Sum_probs=37.9
Q ss_pred cHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhc
Q 042593 26 TYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSL 72 (352)
Q Consensus 26 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 72 (352)
.++.++...++..-.+.+...++.+.+.| ..+..+|-.-++..++.
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 67888999999888999999999999998 66777777667766654
No 346
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=28.31 E-value=2.8e+02 Score=23.60 Aligned_cols=21 Identities=14% Similarity=0.045 Sum_probs=11.0
Q ss_pred HHHHHHHHcCChhHHHHHHhc
Q 042593 270 CLIDILERAGRLEQAEEVASG 290 (352)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~ 290 (352)
.++..+.+....+....++++
T Consensus 143 ~vl~~~~k~~G~~~l~~l~~~ 163 (364)
T 3l6a_A 143 LCLQQLAKLQDREWLTELFQQ 163 (364)
T ss_dssp HHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHH
Confidence 344555555555555555543
No 347
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=28.04 E-value=43 Score=26.28 Aligned_cols=82 Identities=20% Similarity=0.164 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhHhccCCC-------CChhhHHHHHHHHHhCC---------ChhhHHHHHHHHHhcCCCCCchhhHHHHH
Q 042593 116 SNEALALFRRMAACEYTE-------PSEITILAVLPAIWKNG---------EVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179 (352)
Q Consensus 116 ~~~a~~~~~~m~~~~~~~-------p~~~t~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~~~~~li 179 (352)
.+.|..++.+| .-..++ -...-|..+..+|++.| +.+.-..+++...+.|+..-=+++|.++|
T Consensus 147 vetAiaml~dm-G~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssII 225 (249)
T 3m0z_A 147 LETAIALLKDM-GGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSII 225 (249)
T ss_dssp HHHHHHHHHHT-TCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGB
T ss_pred HHHHHHHHHHc-CCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceec
Confidence 67899999998 432211 23446888999999987 45666777777777776654567777777
Q ss_pred HHHHhhCChHHHHHHHHHh
Q 042593 180 DTYAKCGCIFSASKLFEDT 198 (352)
Q Consensus 180 ~~~~~~g~~~~a~~~~~~~ 198 (352)
+--.-.-+.+++.+++..+
T Consensus 226 Dk~TG~TrpedV~~ll~~~ 244 (249)
T 3m0z_A 226 DKASGNTRPADVRQLLEMT 244 (249)
T ss_dssp CTTTCCBCHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHH
Confidence 5444444566666666655
No 348
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=27.52 E-value=2.5e+02 Score=22.88 Aligned_cols=18 Identities=11% Similarity=-0.003 Sum_probs=10.1
Q ss_pred HHHHHhhCChHHHHHHHH
Q 042593 179 IDTYAKCGCIFSASKLFE 196 (352)
Q Consensus 179 i~~~~~~g~~~~a~~~~~ 196 (352)
+...+..|..+.+..+++
T Consensus 243 L~~a~~~~~~~~v~~Ll~ 260 (337)
T 4g8k_A 243 LILAVEKKHLGLVQRLLE 260 (337)
T ss_dssp HHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHhhhhHHHHHHHH
Confidence 344556666666655554
No 349
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=27.11 E-value=1.7e+02 Score=20.79 Aligned_cols=59 Identities=10% Similarity=-0.049 Sum_probs=34.4
Q ss_pred hccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCCh
Q 042593 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188 (352)
Q Consensus 128 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 188 (352)
+..|++++.. -..++..+...+..-.|.++++.+.+.+... +..|.-.-++.+...|-+
T Consensus 14 ~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i-s~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 14 KETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNM-SVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC-CHHHHHHHHHHHHHTTSE
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC-ChhhHHHHHHHHHHCCCE
Confidence 5556655543 2344555555566667778888777776555 444444455666666643
No 350
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=26.85 E-value=1.3e+02 Score=21.10 Aligned_cols=60 Identities=5% Similarity=-0.015 Sum_probs=37.3
Q ss_pred hccCCCCChhhHHHHHHHHHhCC-ChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChH
Q 042593 128 ACEYTEPSEITILAVLPAIWKNG-EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIF 189 (352)
Q Consensus 128 ~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 189 (352)
+..|++++.. -..++..+...+ ..-.|.++++.+.+.+... +..|.-.-++.+...|-+.
T Consensus 10 ~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i-s~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 10 RKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDV-GLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTSEE
T ss_pred HHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC-CHHHHHHHHHHHHHCCcEE
Confidence 5566655543 334555666655 6777888888888877665 5544445557777776543
No 351
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=26.70 E-value=2.7e+02 Score=23.01 Aligned_cols=74 Identities=11% Similarity=0.129 Sum_probs=45.6
Q ss_pred hhHHHHHHhhccCCCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHH----HhcCChhHH
Q 042593 3 VYKQLQQIYIHSHSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMY----VSLGFLKDS 78 (352)
Q Consensus 3 ~~~~M~~~~~~~~g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~----~~~g~~~~a 78 (352)
++..+.+ .|+.| ...++.-++..+++.=.++.+..+++.....|.+.-....-+++..+ .+..++++.
T Consensus 210 L~~hL~~-----~~i~~---~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~i 281 (331)
T 3qye_A 210 LYNHLEE-----HEIGP---SLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETI 281 (331)
T ss_dssp HHHHHHH-----TTCCG---GGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHH
T ss_pred HHHHHHH-----cCCCh---HHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 3445555 67778 77888888888887777888888888888777432112222222221 123466777
Q ss_pred HHHhcc
Q 042593 79 SKLFDE 84 (352)
Q Consensus 79 ~~~~~~ 84 (352)
...++.
T Consensus 282 l~~l~~ 287 (331)
T 3qye_A 282 VDFIKS 287 (331)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777665
No 352
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=25.99 E-value=1.9e+02 Score=20.94 Aligned_cols=24 Identities=4% Similarity=0.086 Sum_probs=16.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHh
Q 042593 210 TIISGFAMHGMGKEAVENFERMQK 233 (352)
Q Consensus 210 ~li~~~~~~~~~~~a~~~~~~m~~ 233 (352)
.-+..+++.|+.+.+...+..+..
T Consensus 98 ~~lE~~~~~~~~~~~~~~l~~l~~ 121 (153)
T 3us6_A 98 VAFRNFCEEQNIDACRRCLQQVKQ 121 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566777777777777777665
No 353
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=25.49 E-value=1.4e+02 Score=21.51 Aligned_cols=59 Identities=14% Similarity=0.081 Sum_probs=33.6
Q ss_pred hccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCCh
Q 042593 128 ACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188 (352)
Q Consensus 128 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 188 (352)
+..|++++.. -..++..+...+..-.|.++++.+.+.+... +..|.-.-++.+...|-+
T Consensus 19 ~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i-s~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 19 KKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNT-SISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC-CHHHHHHHHHHHHHTTSE
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC-CHhhHHHHHHHHHHCCcE
Confidence 5556544432 3345555556666677788888877766555 444444455666666643
No 354
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=25.02 E-value=2e+02 Score=20.96 Aligned_cols=57 Identities=5% Similarity=-0.083 Sum_probs=34.5
Q ss_pred CCCCCCCCCcccHHHHHHHHHhcCCcchHHHHHHHHHHh--CCCCchhhHHHHHHHHHhcCCh
Q 042593 15 HSPLPPLFDSFTYSFLIRTCVTLSYPNLGTQLHAVFSKV--GFQSHVYVNTALGDMYVSLGFL 75 (352)
Q Consensus 15 ~g~~P~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~ 75 (352)
.|+++ +.. =..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-+
T Consensus 27 ~g~r~---T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 27 GGLKY---TKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HTCCC---CHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred cCCCC---CHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 45555 433 345566666666677777777777766 5445555544446666666644
No 355
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=24.81 E-value=45 Score=26.51 Aligned_cols=82 Identities=21% Similarity=0.161 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhHhccCCC-------CChhhHHHHHHHHHhCC---------ChhhHHHHHHHHHhcCCCCCchhhHHHHH
Q 042593 116 SNEALALFRRMAACEYTE-------PSEITILAVLPAIWKNG---------EVRNCQLIHGYGEKRGFNAFDIHVSNCLI 179 (352)
Q Consensus 116 ~~~a~~~~~~m~~~~~~~-------p~~~t~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~~~~~li 179 (352)
.+.|..++.+| .-..++ -...-|..+..+|++.| +.+.-..+++...+.|+...=+++|.++|
T Consensus 170 vetAiaml~dm-G~~SvKffPM~Gl~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~viPHIYsSII 248 (275)
T 3m6y_A 170 IKTAIALVRDM-GGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVYSSII 248 (275)
T ss_dssp HHHHHHHHHHH-TCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSCBCCEECGGGB
T ss_pred HHHHHHHHHHc-CCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCeecccccceec
Confidence 57899999998 432211 23446888899998877 45666777777777776654567777777
Q ss_pred HHHHhhCChHHHHHHHHHh
Q 042593 180 DTYAKCGCIFSASKLFEDT 198 (352)
Q Consensus 180 ~~~~~~g~~~~a~~~~~~~ 198 (352)
+--.-.-+.+++.+++..+
T Consensus 249 Dk~TG~TrpedV~~ll~~~ 267 (275)
T 3m6y_A 249 DKETGNTKVEAVRELLAVV 267 (275)
T ss_dssp CTTTCCBCHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHH
Confidence 5433344566666666655
No 356
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=24.81 E-value=2.1e+02 Score=21.09 Aligned_cols=48 Identities=10% Similarity=0.074 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHHHhcc
Q 042593 153 RNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFEDTSV 200 (352)
Q Consensus 153 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 200 (352)
+....+|..|...|+...-+..|......+-..|++.+|.++|+.-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~ 124 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQ 124 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 446778888888877664566777777777788888888888876443
No 357
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=24.57 E-value=1.3e+02 Score=18.63 Aligned_cols=59 Identities=7% Similarity=0.025 Sum_probs=35.5
Q ss_pred hccCCCCChhhHHHHHHHHHhCC-ChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCCh
Q 042593 128 ACEYTEPSEITILAVLPAIWKNG-EVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCI 188 (352)
Q Consensus 128 ~~~~~~p~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 188 (352)
+..|+..+..- ..++..+...+ ..-.+.++++.+.+.+... +..|....++.+.+.|-+
T Consensus 9 ~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i-s~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 9 KKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEI-GLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTSE
T ss_pred HHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC-CHhhHHHHHHHHHHCCCe
Confidence 55566555433 45556665544 4566777888777766555 555555666777766643
No 358
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=24.07 E-value=1.8e+02 Score=20.16 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=10.4
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 042593 107 IDGYSRMNRSNEALALFRR 125 (352)
Q Consensus 107 i~~~~~~~~~~~a~~~~~~ 125 (352)
+...+..|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3444556666666555554
No 359
>1jog_A Hypothetical protein HI0074; structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: a.24.16.2
Probab=23.72 E-value=2.1e+02 Score=20.56 Aligned_cols=59 Identities=12% Similarity=0.164 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhHhccCCCC---ChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHH
Q 042593 116 SNEALALFRRMAACEYTEP---SEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNC 177 (352)
Q Consensus 116 ~~~a~~~~~~m~~~~~~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 177 (352)
++.|+++.+......|..| +..++..+++...+.|-++......+....++. .+++|+.
T Consensus 54 ~Elawk~~k~~L~~~g~~~~~~~~~s~rd~~r~a~~~GlI~d~~~w~~m~~~RN~---tvH~Y~e 115 (146)
T 1jog_A 54 YELSLKMMKRQLQQDAINTDDIGAYGFKDILREALRFGLIGDMSKWVAYRDMRNI---TSHTYDQ 115 (146)
T ss_dssp HHHHHHHHHHHHHHHTCSCCCTTSCCHHHHHHHHHHTTSCSCHHHHHHHHHHHTT---GGGTTSH
T ss_pred HHHHHHHHHHHHHHcCCCccccCCCCHHHHHHHHHHcCCCCcHHHHHHHHHHhhH---hcccccH
Confidence 5566666666655566654 366788888888888888777444444444443 5566654
No 360
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=23.32 E-value=2.4e+02 Score=21.20 Aligned_cols=117 Identities=12% Similarity=-0.034 Sum_probs=53.7
Q ss_pred HHHHHhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHH
Q 042593 66 GDMYVSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPA 145 (352)
Q Consensus 66 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~ 145 (352)
+...++.|+++....+++.-..++..... -...+...+..|+.+-+..+++.- .......+..- .+.+..
T Consensus 13 l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~--------g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~~-~t~L~~ 82 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEAGYDVRQPDKE--------NVTLLHWAAINNRIDLVKYYISKG-AIVDQLGGDLN-STPLHW 82 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTT--------SCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCBTTTT-BCHHHH
T ss_pred HHHHHHcCChHHHHHHHHcCCCcCCCCCC--------CCCHHHHHHHhCCHHHHHHHHHcC-CcchhhcCCcC-CChhHH
Confidence 33456778888888887754332211100 112234456667776555444433 11111111111 233444
Q ss_pred HHhCCChhhHHHHHHHHHhcCCCCC--chhhHHHHHHHHHhhCChHHHHHHHHH
Q 042593 146 IWKNGEVRNCQLIHGYGEKRGFNAF--DIHVSNCLIDTYAKCGCIFSASKLFED 197 (352)
Q Consensus 146 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~ 197 (352)
.+..|+.+-+. .+.+.|..+. +..-. ..+...+..|+.+-+..+++.
T Consensus 83 A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 83 ATRQGHLSMVV----QLMKYGADPSLIDGEGC-SCIHLAAQFGHTSIVAYLIAK 131 (240)
T ss_dssp HHHHTCHHHHH----HHHHTTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHcCCHHHHH----HHHHcCCCCcccCCCCC-CHHHHHHHcCHHHHHHHHHhc
Confidence 45556655444 3444444431 11111 234455666777666665554
No 361
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=22.63 E-value=4.3e+02 Score=23.83 Aligned_cols=64 Identities=13% Similarity=0.030 Sum_probs=42.9
Q ss_pred chhhHHHHHHHHHhhCChHHHHHHHHHhccCCC---CH--hhHH-HHHHHHHcCCCHHHHHHHHHHHHhc
Q 042593 171 DIHVSNCLIDTYAKCGCIFSASKLFEDTSVDRK---NL--VSWT-TIISGFAMHGMGKEAVENFERMQKV 234 (352)
Q Consensus 171 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~-~li~~~~~~~~~~~a~~~~~~m~~~ 234 (352)
-...+|.+++.|...+.++.|..+.....-... |. ..|. -+...+.-.+++.+|.+.+....+.
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 356788888888888999999999888742211 11 1222 1234466778888888888877654
No 362
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=22.05 E-value=60 Score=22.65 Aligned_cols=55 Identities=13% Similarity=-0.111 Sum_probs=44.8
Q ss_pred cccHHHHHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHH
Q 042593 24 SFTYSFLIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKL 81 (352)
Q Consensus 24 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 81 (352)
-..|.-.|...+..++.+.|.++++...+.| +...|.+.+-.|-..=+++-++++
T Consensus 32 DkLykDAietAa~S~d~elaEeLL~yFVe~g---~kEcF~A~LytCYdLlrpDvVLEl 86 (125)
T 3qil_A 32 DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLEL 86 (125)
T ss_dssp CCCSSHHHHTTTSSCCSHHHHHHHHHHTTSC---SHHHHHHHHHHHTTCSCTTHHHHT
T ss_pred cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHHhccChHHHHHH
Confidence 3457778888889999999999999998877 567787888888787788887776
No 363
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.17 E-value=2.5e+02 Score=20.63 Aligned_cols=61 Identities=7% Similarity=0.009 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhHhccCCCC--ChhhHHHHHH------HHHhCCChhhHHHHHHHHHh
Q 042593 102 KWTGIIDGYSRMNRSNEALALFRRMAACEYTEP--SEITILAVLP------AIWKNGEVRNCQLIHGYGEK 164 (352)
Q Consensus 102 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p--~~~t~~~ll~------~~~~~~~~~~a~~~~~~~~~ 164 (352)
.|..-+..+-. |++-+|.++++.. =.....+ ....|..||. ...+.|+...|..++.+...
T Consensus 35 ~~~~~i~lFn~-g~yfeaHEvLEe~-W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNS-GEFHESHDCFEDE-WYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHH-TTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCchHHHHHHHHH-HHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
No 364
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=21.07 E-value=1e+02 Score=22.77 Aligned_cols=83 Identities=12% Similarity=0.016 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q 042593 104 TGIIDGYSRMNRSNEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYA 183 (352)
Q Consensus 104 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 183 (352)
..++.-|...++.++|...++++ ......|.......-...=.+....+.+-.++..+.. ++-+ .......+...+.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL-~~p~~~~~~V~~~I~~aldrk~~ere~~s~LL~~L~~-~~ls-~~~i~~Gf~~lle 90 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDL-NLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMS-TTDVEKSFDKLLK 90 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH-TCSGGGGHHHHHHHHHHHTSCHHHHHHHHHHHHHHBT-TTBC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh-CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-CCCC-HHHHHHHHHHHHH
Q ss_pred hhCChH
Q 042593 184 KCGCIF 189 (352)
Q Consensus 184 ~~g~~~ 189 (352)
...|+.
T Consensus 91 ~ldDl~ 96 (165)
T 2rg8_A 91 DLPELA 96 (165)
T ss_dssp HHHHHH
T ss_pred hChhhc
No 365
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=20.90 E-value=2.6e+02 Score=20.74 Aligned_cols=112 Identities=7% Similarity=-0.013 Sum_probs=57.0
Q ss_pred HHHHHHHHHhHhccCCCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHhhCChHHHHHHHH
Q 042593 117 NEALALFRRMAACEYTEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAKCGCIFSASKLFE 196 (352)
Q Consensus 117 ~~a~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 196 (352)
+.+..++..+ ...|..-|..--...+....+.|.+ +...+-.++.+.|+.. .+....+..+......+.|..+.+
T Consensus 50 ~~ie~vl~~L-~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~~---~~I~~al~~~~~~de~e~a~~l~~ 124 (177)
T 3e3v_A 50 DYISEIINKL-IDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGIDD---NIAEDALILYTDKLQVEKGVTLAE 124 (177)
T ss_dssp HHHHHHHHHH-HHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCCH---HHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCCH---HHHHHHHHhCCchhHHHHHHHHHH
Confidence 3445566666 6666654444444555555544432 4467777888888864 222222221111122345555555
Q ss_pred HhccC---CCCHhhHHHHHHHHHcCC-CHHHHHHHHHHHHh
Q 042593 197 DTSVD---RKNLVSWTTIISGFAMHG-MGKEAVENFERMQK 233 (352)
Q Consensus 197 ~~~~~---~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~ 233 (352)
.-... .++......++..+.+.| .++.+..+++++..
T Consensus 125 Kk~~~~~~~~~~~~~~K~~~~L~rrGF~~~~I~~vl~~l~~ 165 (177)
T 3e3v_A 125 KLANRYSHDSYRNKQNKIKQSLLTKGFSYDIIDTIIQELDL 165 (177)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHhhccCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHCcC
Confidence 43111 122344556666666666 45666666666543
No 366
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.57 E-value=1.2e+02 Score=23.28 Aligned_cols=45 Identities=18% Similarity=0.226 Sum_probs=28.5
Q ss_pred HHHHHHHHcCChhHHHHHHhcCCCCCCCchhhHHHHHHHHhcccc
Q 042593 270 CLIDILERAGRLEQAEEVASGIPSQITNVVVWRTGFLRLLINSYF 314 (352)
Q Consensus 270 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~li~~~~~~g~~ 314 (352)
..+..|.+.|.+++|.+++++.-...++..-....+....+..+.
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~ 166 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDT 166 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCT
T ss_pred HHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCC
Confidence 557789999999999999999655533334444455555555553
No 367
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=20.50 E-value=2.8e+02 Score=20.85 Aligned_cols=182 Identities=9% Similarity=-0.052 Sum_probs=88.0
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHhcCChhHHHHHhccCCC---CCchhHHHHHHHHHhHHHH
Q 042593 30 LIRTCVTLSYPNLGTQLHAVFSKVGFQSHVYVNTALGDMYVSLGFLKDSSKLFDELPE---RNLVTWNVIITGLVKWTGI 106 (352)
Q Consensus 30 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~~~~i~~~~~~~~l 106 (352)
.+...++.|+++....+++.-...--.++..-.+ .+...+..|+.+-+..+++.-.. +|..- ++.+
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g----------~t~L 77 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRT-ALHWACSAGHTEIVEFLLQLGVPVNDKDDAG----------WSPL 77 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTS----------CCHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCC-HHHHHHHcCcHHHHHHHHHhCCCCCCcCCCC----------CCHH
Confidence 3667778888887777765432211122222222 35556677888888877775433 22222 2222
Q ss_pred HHHHHhcCCHHHHHHHHHHhHhccCCCCC---hhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchh--hHHHHHHH
Q 042593 107 IDGYSRMNRSNEALALFRRMAACEYTEPS---EITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIH--VSNCLIDT 181 (352)
Q Consensus 107 i~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~ 181 (352)
...+..|+.+-+..+++ .|..++ ..-. +.+...+..|+.+-+..++ +.|..+ +.. .-...+..
T Consensus 78 -~~A~~~~~~~~v~~Ll~-----~g~~~~~~~~~g~-t~L~~A~~~~~~~~~~~Ll----~~g~~~-~~~~~~g~t~L~~ 145 (231)
T 3aji_A 78 -HIAASAGXDEIVKALLV-----KGAHVNAVNQNGC-TPLHYAASKNRHEIAVMLL----EGGANP-DAKDHYDATAMHR 145 (231)
T ss_dssp -HHHHHHTCHHHHHHHHH-----TTCCTTCCCTTSC-CHHHHHHHTTCHHHHHHHH----HTTCCT-TCCCTTSCCHHHH
T ss_pred -HHHHHcCHHHHHHHHHH-----cCCCCCCCCCCCC-CHHHHHHHcCCHHHHHHHH----HcCCCC-CCcCCCCCcHHHH
Confidence 23345566654433333 233332 2222 3344445667765544444 444443 211 11233455
Q ss_pred HHhhCChHHHHHHHHHhccC-CCCHhhHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Q 042593 182 YAKCGCIFSASKLFEDTSVD-RKNLVSWTTIISGFAMHGMGKEAVENFERMQKVGLKPN 239 (352)
Q Consensus 182 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 239 (352)
.+..|+.+-+..+++.-... .+|..-.+. +...+..|+.+ +.+.+.+.|..++
T Consensus 146 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~ga~~~ 199 (231)
T 3aji_A 146 AAAKGNLKMVHILLFYKASTNIQDTEGNTP-LHLACDEERVE----EAKFLVTQGASIY 199 (231)
T ss_dssp HHHHTCHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHH----HHHHHHHTTCCSC
T ss_pred HHHcCCHHHHHHHHhcCCCccccCCCCCCH-HHHHHHCCCHH----HHHHHHHCCCCCC
Confidence 56777877766666532111 122222222 33344556644 4445555666654
No 368
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=20.40 E-value=2.9e+02 Score=21.10 Aligned_cols=179 Identities=9% Similarity=0.003 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHH-HhcCChhHHHHHhccCCCCCchhHHHHHHHHHhHHHHHHHHHhcCCH-HHHH
Q 042593 43 GTQLHAVFSKVGFQSHVYVNTALGDMY-VSLGFLKDSSKLFDELPERNLVTWNVIITGLVKWTGIIDGYSRMNRS-NEAL 120 (352)
Q Consensus 43 a~~~~~~m~~~~~~~~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~~~~~~~~~i~~~~~~~~li~~~~~~~~~-~~a~ 120 (352)
.-...+.|........+.....+.... ....++....+.|......+..+... +..++..+...+.. ..+.
T Consensus 33 ~~~~~~e~~~~~~~~~~~~l~~l~~~~~~s~~ei~~l~~~F~~~d~~G~Is~~e-------f~~~l~~~~~~~~~~~~~~ 105 (229)
T 3dd4_A 33 EDSVEDELEMATVRHRPEALELLEAQSKFTKKELQILYRGFKNECPSGVVNEET-------FKEIYSQFFPQGDSTTYAH 105 (229)
T ss_dssp -CCHHHHHTTSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCCCHHH-------HHHHHHHHSCSSSHHHHHH
T ss_pred cCCcHHHhhhhhccCCHHHHHHHHHhcCCCHHHHHHHHHHHHhhCCCCCcCHHH-------HHHHHHHHCCCCCcHHHHH
Confidence 344445555444443344444443321 12234455556665543333444222 22333332222332 3344
Q ss_pred HHHHHhHhccC-CCCChhhHHHHHHHHHhCCChhhHHHHHHHHHhcCCCCCchhhHHHHHHHHHh------------hCC
Q 042593 121 ALFRRMAACEY-TEPSEITILAVLPAIWKNGEVRNCQLIHGYGEKRGFNAFDIHVSNCLIDTYAK------------CGC 187 (352)
Q Consensus 121 ~~~~~m~~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~------------~g~ 187 (352)
.+|+.+ ...+ -..+..-|..++..+.+....+....+|+.+-..|-...+..-+..++..... .-.
T Consensus 106 ~lf~~~-D~d~~G~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~Is~~E~~~~l~~~~~~~~~~~~~~~~~~~~ 184 (229)
T 3dd4_A 106 FLFNAF-DTDHNGAVSFEDFIKGLSILLRGTVQEKLNWAFNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAP 184 (229)
T ss_dssp HHHHTT-CSSCCSSCCHHHHHHHHHHHHHSCHHHHHHHHHHHHCTTCSSCCBHHHHHHHHHHHHHHCC-----------C
T ss_pred HHHHHc-CCCCCCeEeHHHHHHHHHHHcCCChHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHHHHhccccCCCcchhhH
Confidence 666666 3222 22344444455554444444455566666553332111133334444443321 112
Q ss_pred hHHHHHHHHHhccCCCCHhhHHHHHHHHHcCCCHHHHHHHHH
Q 042593 188 IFSASKLFEDTSVDRKNLVSWTTIISGFAMHGMGKEAVENFE 229 (352)
Q Consensus 188 ~~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 229 (352)
-+.+.++|+.+-.......+|.-++..+.+...+.+++..|+
T Consensus 185 ~~~~~~~f~~~D~d~dG~Is~~EF~~~~~~~~~~~~~~~~~D 226 (229)
T 3dd4_A 185 RQHVETFFQKMDKNKDGVVTIDEFIESCQKDENIMRSMQLFE 226 (229)
T ss_dssp CTHHHHHHHHHCSSCSSBCCHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCcEeHHHHHHHHHhCHHHHHHHHhcc
Confidence 356777888775555556777777777776655555555543
Done!