Query 042597
Match_columns 693
No_of_seqs 289 out of 3267
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 07:43:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042597.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042597hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.6E-75 3.4E-80 651.5 34.9 657 6-682 153-883 (889)
2 PLN03210 Resistant to P. syrin 100.0 6.6E-58 1.4E-62 539.4 43.6 618 9-651 183-913 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 7.4E-39 1.6E-43 324.8 17.3 257 15-273 1-285 (287)
4 KOG0444 Cytoskeletal regulator 99.8 1.9E-21 4.2E-26 197.4 0.8 330 321-670 36-400 (1255)
5 PLN00113 leucine-rich repeat r 99.8 2.3E-19 4.9E-24 212.9 14.5 131 338-469 117-248 (968)
6 PLN00113 leucine-rich repeat r 99.8 5.7E-19 1.2E-23 209.5 14.6 291 336-649 137-446 (968)
7 KOG4194 Membrane glycoprotein 99.8 4.2E-20 9.1E-25 186.7 0.5 281 336-650 99-434 (873)
8 KOG4194 Membrane glycoprotein 99.7 2.7E-19 5.8E-24 180.9 1.9 272 339-651 173-464 (873)
9 PLN03210 Resistant to P. syrin 99.7 9.7E-17 2.1E-21 190.6 18.3 289 328-646 600-945 (1153)
10 KOG0444 Cytoskeletal regulator 99.7 3.5E-19 7.6E-24 181.2 -3.7 293 334-654 27-361 (1255)
11 KOG0472 Leucine-rich repeat pr 99.7 3.8E-18 8.3E-23 165.3 -2.2 282 333-651 200-546 (565)
12 PRK15387 E3 ubiquitin-protein 99.6 1.1E-14 2.4E-19 160.6 13.9 252 321-642 205-456 (788)
13 KOG0472 Leucine-rich repeat pr 99.5 7.8E-17 1.7E-21 156.3 -7.5 249 341-653 47-296 (565)
14 KOG0617 Ras suppressor protein 99.5 1.1E-15 2.4E-20 131.2 -3.2 157 329-501 23-182 (264)
15 PRK15370 E3 ubiquitin-protein 99.5 9.6E-14 2.1E-18 154.3 11.0 119 339-470 199-317 (754)
16 KOG0618 Serine/threonine phosp 99.4 2.3E-14 4.9E-19 153.5 2.6 274 340-653 46-331 (1081)
17 KOG0617 Ras suppressor protein 99.4 2.8E-15 6E-20 128.8 -4.1 179 350-581 22-201 (264)
18 PRK15370 E3 ubiquitin-protein 99.4 3.3E-13 7.1E-18 150.1 8.1 243 340-642 179-426 (754)
19 PRK15387 E3 ubiquitin-protein 99.4 8.7E-13 1.9E-17 145.8 10.8 240 340-652 202-442 (788)
20 KOG4237 Extracellular matrix p 99.4 2.8E-14 6E-19 138.7 -1.0 291 325-640 54-355 (498)
21 KOG0618 Serine/threonine phosp 99.3 2.3E-13 5.1E-18 145.9 0.5 270 339-639 219-505 (1081)
22 PF01637 Arch_ATPase: Archaeal 99.3 1.7E-11 3.7E-16 120.2 9.8 170 12-188 1-233 (234)
23 KOG4658 Apoptotic ATPase [Sign 99.2 1.4E-11 3E-16 139.4 8.5 306 326-651 532-867 (889)
24 PRK04841 transcriptional regul 99.2 7.1E-10 1.5E-14 131.3 21.6 265 9-311 13-332 (903)
25 TIGR00635 ruvB Holliday juncti 99.2 1.7E-09 3.6E-14 110.5 18.9 244 10-297 4-294 (305)
26 cd00116 LRR_RI Leucine-rich re 99.2 3E-11 6.6E-16 124.6 5.8 38 545-582 218-262 (319)
27 PRK00411 cdc6 cell division co 99.1 1E-08 2.2E-13 108.9 24.2 268 8-291 28-357 (394)
28 PRK00080 ruvB Holliday junctio 99.1 7.9E-10 1.7E-14 113.5 14.7 239 10-292 25-310 (328)
29 cd00116 LRR_RI Leucine-rich re 99.1 3.8E-11 8.3E-16 123.9 3.2 239 357-641 19-288 (319)
30 PF14580 LRR_9: Leucine-rich r 99.1 8.6E-11 1.9E-15 106.5 5.0 118 348-470 6-126 (175)
31 KOG4237 Extracellular matrix p 99.1 6E-12 1.3E-16 122.7 -3.3 259 361-651 67-341 (498)
32 TIGR03015 pepcterm_ATPase puta 99.1 1.1E-08 2.4E-13 102.5 19.1 171 20-193 29-242 (269)
33 PF05496 RuvB_N: Holliday junc 99.0 1.3E-09 2.9E-14 100.6 10.8 167 10-195 24-227 (233)
34 TIGR02928 orc1/cdc6 family rep 99.0 6.7E-08 1.4E-12 101.5 25.2 269 9-291 14-349 (365)
35 COG3899 Predicted ATPase [Gene 99.0 2.2E-08 4.7E-13 114.3 21.0 284 11-310 1-385 (849)
36 COG2256 MGS1 ATPase related to 99.0 2.3E-08 5E-13 99.0 17.9 213 10-236 24-265 (436)
37 PF14580 LRR_9: Leucine-rich r 99.0 5.3E-10 1.2E-14 101.4 4.7 133 331-467 11-150 (175)
38 COG2909 MalT ATP-dependent tra 98.9 4.4E-08 9.5E-13 105.8 18.3 267 10-312 19-339 (894)
39 PRK13342 recombination factor 98.9 1.4E-07 3.1E-12 99.9 19.4 169 10-192 12-199 (413)
40 KOG3207 Beta-tubulin folding c 98.9 4.2E-10 9E-15 111.6 -0.0 207 338-582 120-338 (505)
41 TIGR03420 DnaA_homol_Hda DnaA 98.8 5.1E-08 1.1E-12 94.9 13.8 163 10-192 15-204 (226)
42 COG2255 RuvB Holliday junction 98.8 1.1E-07 2.3E-12 89.8 15.0 207 10-235 26-277 (332)
43 KOG0532 Leucine-rich repeat (L 98.8 3.8E-10 8.2E-15 115.4 -2.1 122 342-468 78-200 (722)
44 PRK06893 DNA replication initi 98.8 8.3E-08 1.8E-12 92.9 14.2 144 32-193 38-207 (229)
45 PF05729 NACHT: NACHT domain 98.8 2.1E-08 4.5E-13 92.4 9.5 124 34-158 1-164 (166)
46 KOG3207 Beta-tubulin folding c 98.8 7.4E-10 1.6E-14 109.9 -0.6 110 358-468 118-233 (505)
47 COG4886 Leucine-rich repeat (L 98.8 5.2E-09 1.1E-13 111.2 5.5 194 343-585 97-292 (394)
48 PRK14963 DNA polymerase III su 98.7 1.5E-07 3.3E-12 100.9 14.3 172 10-187 14-215 (504)
49 PRK07003 DNA polymerase III su 98.7 4E-07 8.6E-12 98.9 16.9 176 10-191 16-223 (830)
50 PRK04195 replication factor C 98.7 5E-07 1.1E-11 97.8 18.0 171 10-194 14-207 (482)
51 PRK14949 DNA polymerase III su 98.7 1.7E-07 3.6E-12 103.8 13.5 175 10-190 16-221 (944)
52 PRK14956 DNA polymerase III su 98.7 2.4E-07 5.3E-12 96.7 13.7 174 10-189 18-222 (484)
53 PTZ00112 origin recognition co 98.7 1.1E-06 2.3E-11 96.1 18.2 186 9-194 754-987 (1164)
54 KOG2120 SCF ubiquitin ligase, 98.7 3.4E-09 7.3E-14 100.0 -0.7 87 385-471 185-274 (419)
55 PRK08727 hypothetical protein; 98.7 7.3E-07 1.6E-11 86.5 15.4 156 11-186 20-201 (233)
56 PRK13341 recombination factor 98.6 2.3E-06 4.9E-11 95.5 20.8 166 10-189 28-217 (725)
57 PRK12402 replication factor C 98.6 8.4E-07 1.8E-11 92.2 16.0 174 10-190 15-227 (337)
58 PRK14961 DNA polymerase III su 98.6 4.2E-07 9E-12 94.5 13.6 171 10-190 16-221 (363)
59 PRK08084 DNA replication initi 98.6 1.1E-06 2.4E-11 85.4 15.3 161 12-192 25-212 (235)
60 PLN03025 replication factor C 98.6 2.9E-07 6.3E-12 94.1 11.8 167 10-187 13-198 (319)
61 PF13173 AAA_14: AAA domain 98.6 1.2E-07 2.5E-12 82.8 7.6 109 33-149 2-127 (128)
62 PRK14960 DNA polymerase III su 98.6 6.3E-07 1.4E-11 96.3 14.1 173 10-188 15-218 (702)
63 PRK09112 DNA polymerase III su 98.6 1.3E-06 2.8E-11 89.5 15.7 178 5-189 17-240 (351)
64 PF00308 Bac_DnaA: Bacterial d 98.6 9.2E-07 2E-11 84.7 13.6 175 10-191 9-210 (219)
65 PRK07471 DNA polymerase III su 98.6 1.2E-06 2.7E-11 90.0 15.4 172 5-189 13-238 (365)
66 PRK12323 DNA polymerase III su 98.6 7.6E-07 1.7E-11 95.5 14.0 169 10-189 16-225 (700)
67 KOG1259 Nischarin, modulator o 98.6 1.7E-08 3.7E-13 95.3 1.4 133 335-472 280-414 (490)
68 PF14516 AAA_35: AAA-like doma 98.6 1.2E-05 2.5E-10 82.5 21.8 179 5-196 5-246 (331)
69 KOG0532 Leucine-rich repeat (L 98.6 4.8E-09 1E-13 107.5 -2.9 207 344-580 55-270 (722)
70 PRK08903 DnaA regulatory inact 98.6 1.3E-06 2.8E-11 84.9 14.0 162 10-194 18-204 (227)
71 PRK09087 hypothetical protein; 98.5 2.2E-06 4.8E-11 82.4 15.3 133 32-191 43-197 (226)
72 PRK06645 DNA polymerase III su 98.5 1E-06 2.2E-11 94.1 13.9 173 10-187 21-227 (507)
73 PRK08691 DNA polymerase III su 98.5 8.5E-07 1.8E-11 96.3 13.1 175 10-190 16-221 (709)
74 KOG4341 F-box protein containi 98.5 1.5E-08 3.2E-13 100.3 -0.5 281 339-647 138-442 (483)
75 PRK05896 DNA polymerase III su 98.5 1E-06 2.2E-11 94.7 13.2 166 10-186 16-217 (605)
76 PRK00440 rfc replication facto 98.5 1.4E-06 3.1E-11 89.7 14.1 170 10-190 17-204 (319)
77 PRK07994 DNA polymerase III su 98.5 8.7E-07 1.9E-11 96.7 12.8 169 10-190 16-221 (647)
78 KOG1259 Nischarin, modulator o 98.5 3.4E-08 7.3E-13 93.3 1.6 131 334-468 209-363 (490)
79 PRK14962 DNA polymerase III su 98.5 3.1E-06 6.6E-11 90.2 16.3 169 10-193 14-223 (472)
80 PRK14957 DNA polymerase III su 98.5 1.7E-06 3.7E-11 93.0 14.1 171 10-190 16-222 (546)
81 PRK14958 DNA polymerase III su 98.5 1.1E-06 2.3E-11 94.7 12.6 174 10-189 16-220 (509)
82 PRK14964 DNA polymerase III su 98.5 1.5E-06 3.3E-11 91.9 13.2 166 10-187 13-215 (491)
83 PF13855 LRR_8: Leucine rich r 98.5 1.5E-07 3.2E-12 70.0 3.8 59 361-420 1-60 (61)
84 PLN03150 hypothetical protein; 98.5 2.3E-07 5E-12 103.4 7.0 107 362-468 419-526 (623)
85 PRK14087 dnaA chromosomal repl 98.5 1.9E-05 4.2E-10 84.0 21.2 158 33-193 141-323 (450)
86 PRK05642 DNA replication initi 98.5 3.6E-06 7.8E-11 81.7 14.3 142 33-192 45-211 (234)
87 PRK14955 DNA polymerase III su 98.5 1.9E-06 4.2E-11 90.7 13.2 170 10-189 16-228 (397)
88 TIGR03345 VI_ClpV1 type VI sec 98.4 2E-06 4.4E-11 98.4 14.0 170 10-182 187-389 (852)
89 PRK14951 DNA polymerase III su 98.4 1.9E-06 4.1E-11 93.9 12.7 170 10-189 16-225 (618)
90 KOG0989 Replication factor C, 98.4 2.8E-06 6.1E-11 81.3 11.6 175 10-191 36-232 (346)
91 COG4886 Leucine-rich repeat (L 98.4 2.5E-07 5.4E-12 98.4 5.1 131 335-469 112-244 (394)
92 PRK14952 DNA polymerase III su 98.4 5.1E-06 1.1E-10 90.2 14.6 176 10-191 13-222 (584)
93 TIGR02397 dnaX_nterm DNA polym 98.4 8.1E-06 1.8E-10 85.4 15.7 172 10-191 14-220 (355)
94 TIGR02639 ClpA ATP-dependent C 98.4 2.7E-06 5.9E-11 96.7 12.4 144 10-158 182-359 (731)
95 PRK07133 DNA polymerase III su 98.4 5.1E-06 1.1E-10 91.3 13.9 169 10-189 18-219 (725)
96 PF13855 LRR_8: Leucine rich r 98.4 2.7E-07 5.9E-12 68.5 2.9 56 386-442 2-59 (61)
97 KOG0531 Protein phosphatase 1, 98.4 4.4E-08 9.6E-13 104.2 -2.1 127 339-470 72-199 (414)
98 PRK05564 DNA polymerase III su 98.3 5.2E-06 1.1E-10 84.8 12.8 165 10-187 4-188 (313)
99 PRK07764 DNA polymerase III su 98.3 5.4E-06 1.2E-10 93.7 13.7 167 10-187 15-219 (824)
100 PRK07940 DNA polymerase III su 98.3 8.3E-06 1.8E-10 84.7 14.1 161 10-187 5-211 (394)
101 PRK14969 DNA polymerase III su 98.3 7E-06 1.5E-10 89.1 14.0 165 10-189 16-221 (527)
102 PRK14954 DNA polymerase III su 98.3 9.1E-06 2E-10 89.0 14.8 169 10-184 16-223 (620)
103 KOG1909 Ran GTPase-activating 98.3 1.3E-07 2.8E-12 91.7 0.4 90 544-641 209-308 (382)
104 COG1474 CDC6 Cdc6-related prot 98.3 1.8E-05 4E-10 81.3 15.5 182 9-191 16-240 (366)
105 TIGR01242 26Sp45 26S proteasom 98.3 2.8E-06 6E-11 88.7 9.7 158 10-183 122-328 (364)
106 KOG0531 Protein phosphatase 1, 98.3 1.1E-07 2.3E-12 101.3 -1.1 108 358-471 69-176 (414)
107 PRK14970 DNA polymerase III su 98.3 1.4E-05 3.1E-10 83.7 14.6 171 10-188 17-208 (367)
108 cd00009 AAA The AAA+ (ATPases 98.3 4.7E-06 1E-10 74.9 9.5 95 13-112 1-96 (151)
109 PRK06305 DNA polymerase III su 98.3 1.8E-05 3.9E-10 84.2 15.2 166 10-186 17-219 (451)
110 PRK09111 DNA polymerase III su 98.3 1.1E-05 2.4E-10 88.2 13.8 175 10-190 24-234 (598)
111 PLN03150 hypothetical protein; 98.3 1.4E-06 3.1E-11 97.1 7.0 110 340-449 419-532 (623)
112 PRK14959 DNA polymerase III su 98.2 1E-05 2.2E-10 87.7 12.8 172 10-193 16-225 (624)
113 CHL00095 clpC Clp protease ATP 98.2 6.9E-06 1.5E-10 94.6 12.3 169 10-181 179-379 (821)
114 PRK00149 dnaA chromosomal repl 98.2 7.4E-05 1.6E-09 80.4 19.4 223 32-270 147-401 (450)
115 KOG2028 ATPase related to the 98.2 1.9E-05 4E-10 77.2 13.0 163 10-185 138-332 (554)
116 PRK08451 DNA polymerase III su 98.2 1.7E-05 3.6E-10 85.0 14.1 173 10-190 14-219 (535)
117 TIGR00362 DnaA chromosomal rep 98.2 6.2E-05 1.3E-09 79.9 17.8 170 33-209 136-337 (405)
118 TIGR02881 spore_V_K stage V sp 98.2 1.5E-05 3.2E-10 79.1 12.2 144 10-161 6-195 (261)
119 PRK06620 hypothetical protein; 98.2 2.7E-05 5.9E-10 74.2 13.4 126 34-188 45-188 (214)
120 KOG1909 Ran GTPase-activating 98.2 6.6E-07 1.4E-11 86.9 2.3 239 335-618 26-309 (382)
121 PRK03992 proteasome-activating 98.2 9E-06 2E-10 85.2 11.0 161 10-183 131-337 (389)
122 PRK14950 DNA polymerase III su 98.2 1.7E-05 3.8E-10 87.6 13.4 174 10-191 16-223 (585)
123 TIGR00678 holB DNA polymerase 98.2 2.7E-05 5.8E-10 73.2 12.7 148 22-185 4-187 (188)
124 PRK14953 DNA polymerase III su 98.2 5.5E-05 1.2E-09 81.1 16.5 168 10-191 16-222 (486)
125 PRK14971 DNA polymerase III su 98.2 3.4E-05 7.3E-10 85.1 15.0 167 10-187 17-220 (614)
126 PRK14088 dnaA chromosomal repl 98.2 3.3E-05 7.2E-10 82.2 14.5 171 33-209 130-332 (440)
127 PRK12422 chromosomal replicati 98.1 0.0003 6.6E-09 74.7 21.4 142 33-183 141-307 (445)
128 KOG2120 SCF ubiquitin ligase, 98.1 2.5E-07 5.4E-12 87.6 -1.7 129 340-468 186-324 (419)
129 PRK11034 clpA ATP-dependent Cl 98.1 2E-05 4.2E-10 88.6 12.8 146 10-158 186-363 (758)
130 PRK14086 dnaA chromosomal repl 98.1 0.00018 3.8E-09 77.8 19.2 170 33-209 314-515 (617)
131 PRK06647 DNA polymerase III su 98.1 3.7E-05 8.1E-10 83.7 14.2 171 10-190 16-221 (563)
132 PRK05563 DNA polymerase III su 98.1 5.2E-05 1.1E-09 83.0 15.3 168 10-188 16-219 (559)
133 TIGR03346 chaperone_ClpB ATP-d 98.1 2.6E-05 5.6E-10 90.2 13.3 146 10-158 173-350 (852)
134 PRK10865 protein disaggregatio 98.1 3.7E-05 8.1E-10 88.5 14.3 145 10-157 178-354 (857)
135 PRK14965 DNA polymerase III su 98.1 5.4E-05 1.2E-09 83.3 14.1 168 10-189 16-221 (576)
136 PRK14948 DNA polymerase III su 98.1 0.0001 2.2E-09 81.4 16.1 177 10-191 16-224 (620)
137 PTZ00202 tuzin; Provisional 98.1 5.3E-05 1.1E-09 77.1 12.6 52 6-57 257-310 (550)
138 PTZ00361 26 proteosome regulat 98.0 2.3E-05 4.9E-10 82.3 10.4 161 10-183 183-389 (438)
139 PF13191 AAA_16: AAA ATPase do 98.0 6.8E-06 1.5E-10 77.1 5.5 47 11-57 1-48 (185)
140 TIGR02903 spore_lon_C ATP-depe 98.0 6.1E-05 1.3E-09 83.5 13.7 46 10-57 154-199 (615)
141 COG1222 RPT1 ATP-dependent 26S 98.0 3.6E-05 7.8E-10 75.6 10.3 166 12-193 153-371 (406)
142 cd01128 rho_factor Transcripti 98.0 2.7E-05 6E-10 75.5 9.7 39 32-72 15-53 (249)
143 PF05673 DUF815: Protein of un 98.0 0.00032 7E-09 66.4 15.8 88 10-110 27-116 (249)
144 PRK15386 type III secretion pr 98.0 2.3E-05 5E-10 80.2 8.8 54 408-467 51-104 (426)
145 PRK09376 rho transcription ter 98.0 3.3E-05 7.1E-10 78.2 9.1 42 32-75 168-209 (416)
146 PTZ00454 26S protease regulato 98.0 7.5E-05 1.6E-09 77.9 12.1 161 10-183 145-351 (398)
147 CHL00181 cbbX CbbX; Provisiona 98.0 0.00013 2.7E-09 73.0 13.2 143 11-161 24-213 (287)
148 PF12799 LRR_4: Leucine Rich r 97.9 8.5E-06 1.8E-10 55.3 3.3 38 410-448 2-39 (44)
149 PF12799 LRR_4: Leucine Rich r 97.9 9.5E-06 2.1E-10 55.0 3.4 40 385-425 1-40 (44)
150 KOG0991 Replication factor C, 97.9 0.00012 2.6E-09 67.2 11.5 93 10-113 27-126 (333)
151 PRK07399 DNA polymerase III su 97.9 0.00059 1.3E-08 69.0 17.8 171 10-189 4-221 (314)
152 TIGR02880 cbbX_cfxQ probable R 97.9 0.00012 2.6E-09 73.2 12.7 144 11-161 23-212 (284)
153 COG0593 DnaA ATPase involved i 97.9 0.00059 1.3E-08 70.2 17.7 174 32-214 112-318 (408)
154 PRK05707 DNA polymerase III su 97.9 0.00019 4.2E-09 72.9 13.8 148 32-189 21-203 (328)
155 KOG1859 Leucine-rich repeat pr 97.9 4.9E-07 1.1E-11 95.5 -5.5 130 334-469 159-291 (1096)
156 KOG1859 Leucine-rich repeat pr 97.9 7E-07 1.5E-11 94.4 -4.5 151 334-506 104-265 (1096)
157 KOG4341 F-box protein containi 97.9 2.1E-06 4.6E-11 85.3 -1.3 271 337-638 162-459 (483)
158 TIGR03689 pup_AAA proteasome A 97.8 8.9E-05 1.9E-09 79.0 10.7 150 10-159 182-380 (512)
159 PF13401 AAA_22: AAA domain; P 97.8 1.4E-05 3E-10 70.2 3.9 81 32-112 3-99 (131)
160 PF10443 RNA12: RNA12 protein; 97.8 0.0043 9.3E-08 63.7 21.8 175 15-198 1-287 (431)
161 COG3903 Predicted ATPase [Gene 97.8 0.00011 2.4E-09 73.9 10.3 262 32-308 13-311 (414)
162 KOG2982 Uncharacterized conser 97.8 1.1E-05 2.4E-10 76.7 2.8 67 545-623 196-265 (418)
163 COG2812 DnaX DNA polymerase II 97.8 5.8E-05 1.3E-09 79.8 8.3 169 10-184 16-215 (515)
164 KOG2035 Replication factor C, 97.8 0.0013 2.7E-08 62.5 15.7 197 10-212 13-261 (351)
165 KOG0733 Nuclear AAA ATPase (VC 97.8 0.00022 4.8E-09 74.7 11.7 92 10-112 190-294 (802)
166 CHL00176 ftsH cell division pr 97.8 0.00018 3.9E-09 79.5 11.9 161 10-182 183-387 (638)
167 KOG2982 Uncharacterized conser 97.8 5.5E-06 1.2E-10 78.7 0.1 82 526-614 199-286 (418)
168 KOG1644 U2-associated snRNP A' 97.8 3.4E-05 7.3E-10 69.5 4.9 103 339-442 42-150 (233)
169 KOG2227 Pre-initiation complex 97.8 0.0032 6.8E-08 64.5 19.3 181 9-192 149-371 (529)
170 COG1223 Predicted ATPase (AAA+ 97.8 0.00025 5.4E-09 66.4 10.6 161 10-183 121-319 (368)
171 PHA02544 44 clamp loader, smal 97.8 0.00041 8.9E-09 71.2 13.6 133 10-155 21-171 (316)
172 PF00004 AAA: ATPase family as 97.8 5.1E-05 1.1E-09 66.6 6.0 69 36-112 1-70 (132)
173 PRK11331 5-methylcytosine-spec 97.7 0.00011 2.4E-09 76.2 8.9 99 10-113 175-285 (459)
174 KOG2543 Origin recognition com 97.7 0.0004 8.8E-09 68.9 12.1 143 9-157 5-193 (438)
175 TIGR00602 rad24 checkpoint pro 97.7 0.00018 3.9E-09 78.9 10.6 178 10-192 84-326 (637)
176 COG3267 ExeA Type II secretory 97.7 0.00056 1.2E-08 64.5 12.2 159 31-192 49-248 (269)
177 TIGR00767 rho transcription te 97.7 0.00019 4.2E-09 73.1 9.6 40 32-73 167-206 (415)
178 TIGR01241 FtsH_fam ATP-depende 97.7 0.00025 5.4E-09 77.3 11.2 162 10-183 55-260 (495)
179 COG0466 Lon ATP-dependent Lon 97.6 0.00013 2.8E-09 78.2 7.7 142 9-157 322-508 (782)
180 PRK08769 DNA polymerase III su 97.6 0.001 2.2E-08 67.1 13.7 160 18-189 12-208 (319)
181 KOG4579 Leucine-rich repeat (L 97.6 1.3E-05 2.9E-10 67.3 0.2 108 342-451 30-141 (177)
182 PRK12377 putative replication 97.6 0.00018 3.9E-09 69.8 7.2 76 32-112 100-175 (248)
183 PRK08116 hypothetical protein; 97.6 0.00021 4.6E-09 70.6 7.8 73 34-110 115-188 (268)
184 PRK08118 topology modulation p 97.5 0.00013 2.9E-09 66.5 5.6 67 34-110 2-68 (167)
185 PRK07952 DNA replication prote 97.5 0.00024 5.2E-09 68.7 7.5 91 18-112 84-174 (244)
186 KOG3665 ZYG-1-like serine/thre 97.5 4.7E-05 1E-09 84.8 2.6 104 361-467 122-230 (699)
187 KOG0741 AAA+-type ATPase [Post 97.5 0.0014 2.9E-08 67.8 12.6 148 31-195 536-718 (744)
188 PF05621 TniB: Bacterial TniB 97.5 0.0028 6.1E-08 62.2 14.3 178 10-189 34-261 (302)
189 COG1373 Predicted ATPase (AAA+ 97.5 0.0013 2.8E-08 69.1 13.0 109 35-153 39-163 (398)
190 KOG3665 ZYG-1-like serine/thre 97.5 3.9E-05 8.5E-10 85.4 1.8 106 385-506 122-231 (699)
191 KOG2004 Mitochondrial ATP-depe 97.5 0.00023 5E-09 76.0 6.9 142 9-157 410-596 (906)
192 PRK07261 topology modulation p 97.5 0.00026 5.7E-09 65.0 6.5 66 35-110 2-67 (171)
193 PRK06871 DNA polymerase III su 97.5 0.0029 6.2E-08 63.9 14.4 150 19-186 11-200 (325)
194 PF04665 Pox_A32: Poxvirus A32 97.5 0.00064 1.4E-08 64.9 9.1 37 33-72 13-49 (241)
195 COG0542 clpA ATP-binding subun 97.4 0.00053 1.1E-08 75.8 9.6 145 10-157 170-346 (786)
196 smart00382 AAA ATPases associa 97.4 0.00051 1.1E-08 60.9 8.1 79 33-114 2-92 (148)
197 PRK08058 DNA polymerase III su 97.4 0.0016 3.4E-08 66.8 12.5 134 11-155 6-180 (329)
198 PRK15386 type III secretion pr 97.4 0.00024 5.1E-09 72.9 6.2 82 337-429 50-135 (426)
199 CHL00195 ycf46 Ycf46; Provisio 97.4 0.0071 1.5E-07 64.8 16.9 164 10-183 228-429 (489)
200 TIGR01243 CDC48 AAA family ATP 97.3 0.0018 4E-08 74.2 13.0 161 10-183 453-657 (733)
201 PF01695 IstB_IS21: IstB-like 97.3 0.00022 4.7E-09 65.8 4.1 75 32-112 46-120 (178)
202 COG1618 Predicted nucleotide k 97.3 0.00075 1.6E-08 58.7 6.9 25 33-57 5-29 (179)
203 PF06309 Torsin: Torsin; Inte 97.3 0.0019 4.1E-08 54.5 9.0 88 10-98 25-118 (127)
204 PRK08181 transposase; Validate 97.3 0.00053 1.2E-08 67.4 6.7 37 33-72 106-142 (269)
205 KOG1644 U2-associated snRNP A' 97.3 0.00024 5.3E-09 64.1 3.8 106 384-505 41-150 (233)
206 smart00763 AAA_PrkA PrkA AAA d 97.3 0.0004 8.7E-09 70.2 5.8 47 11-57 52-102 (361)
207 PRK07993 DNA polymerase III su 97.2 0.0046 1E-07 63.2 13.3 152 18-186 10-201 (334)
208 KOG4579 Leucine-rich repeat (L 97.2 8.7E-05 1.9E-09 62.5 0.2 89 339-429 53-143 (177)
209 PRK10787 DNA-binding ATP-depen 97.2 0.00082 1.8E-08 76.4 7.9 49 9-57 321-373 (784)
210 KOG0730 AAA+-type ATPase [Post 97.2 0.0043 9.3E-08 66.3 12.4 193 13-217 437-679 (693)
211 PRK06526 transposase; Provisio 97.2 0.00026 5.5E-09 69.3 3.2 26 32-57 97-122 (254)
212 KOG0728 26S proteasome regulat 97.2 0.0026 5.7E-08 59.2 9.4 168 12-191 148-365 (404)
213 PRK09183 transposase/IS protei 97.1 0.0006 1.3E-08 67.1 5.5 75 32-111 101-175 (259)
214 KOG0744 AAA+-type ATPase [Post 97.1 0.0009 1.9E-08 64.9 6.1 80 32-112 176-262 (423)
215 KOG2123 Uncharacterized conser 97.1 3.6E-05 7.7E-10 72.7 -3.3 100 360-463 18-123 (388)
216 PHA00729 NTP-binding motif con 97.1 0.003 6.5E-08 59.7 9.3 35 21-57 7-41 (226)
217 PRK06835 DNA replication prote 97.1 0.0016 3.4E-08 66.2 7.7 40 33-75 183-222 (329)
218 TIGR01243 CDC48 AAA family ATP 97.1 0.0038 8.3E-08 71.6 11.9 163 10-184 178-382 (733)
219 PF06068 TIP49: TIP49 C-termin 97.1 0.0064 1.4E-07 61.0 11.6 51 7-57 21-74 (398)
220 KOG0733 Nuclear AAA ATPase (VC 97.0 0.0032 7E-08 66.3 9.7 119 33-159 545-694 (802)
221 PRK12608 transcription termina 97.0 0.004 8.7E-08 63.3 10.0 51 19-72 120-171 (380)
222 PRK06696 uridine kinase; Valid 97.0 0.0011 2.4E-08 64.0 5.9 44 14-57 2-46 (223)
223 PRK04132 replication factor C 97.0 0.007 1.5E-07 68.6 12.9 146 38-192 569-734 (846)
224 PRK06921 hypothetical protein; 97.0 0.0012 2.6E-08 65.1 6.1 39 32-72 116-154 (266)
225 PRK06090 DNA polymerase III su 97.0 0.019 4E-07 58.0 14.6 152 18-189 11-201 (319)
226 KOG0734 AAA+-type ATPase conta 97.0 0.0053 1.2E-07 63.7 10.6 91 10-112 304-408 (752)
227 TIGR02902 spore_lonB ATP-depen 97.0 0.0059 1.3E-07 66.8 11.9 46 10-57 65-110 (531)
228 PF07693 KAP_NTPase: KAP famil 97.0 0.022 4.7E-07 58.8 15.5 43 15-57 1-44 (325)
229 PF13207 AAA_17: AAA domain; P 97.0 0.00066 1.4E-08 58.5 3.4 23 35-57 1-23 (121)
230 TIGR00763 lon ATP-dependent pr 97.0 0.0024 5.2E-08 73.5 8.8 48 10-57 320-371 (775)
231 KOG0736 Peroxisome assembly fa 96.9 0.014 3E-07 63.5 13.6 91 10-112 672-776 (953)
232 KOG2170 ATPase of the AAA+ sup 96.9 0.0019 4.2E-08 62.2 6.5 102 11-112 83-190 (344)
233 PF03215 Rad17: Rad17 cell cyc 96.9 0.02 4.3E-07 61.9 15.1 58 10-72 19-79 (519)
234 PLN00020 ribulose bisphosphate 96.9 0.0016 3.5E-08 65.4 6.2 75 31-111 146-223 (413)
235 KOG0735 AAA+-type ATPase [Post 96.9 0.0099 2.2E-07 63.9 12.2 144 32-182 430-608 (952)
236 KOG0729 26S proteasome regulat 96.9 0.0055 1.2E-07 57.7 9.0 98 3-112 168-282 (435)
237 KOG0731 AAA+-type ATPase conta 96.8 0.0082 1.8E-07 66.2 10.8 162 10-186 311-521 (774)
238 KOG0652 26S proteasome regulat 96.8 0.014 3E-07 54.9 10.7 173 10-194 171-392 (424)
239 COG5238 RNA1 Ran GTPase-activa 96.8 0.0009 1.9E-08 63.2 2.9 115 526-648 185-319 (388)
240 PRK05541 adenylylsulfate kinas 96.8 0.0051 1.1E-07 57.0 8.0 38 32-72 6-43 (176)
241 TIGR02237 recomb_radB DNA repa 96.8 0.007 1.5E-07 57.8 9.0 41 31-74 10-50 (209)
242 cd01133 F1-ATPase_beta F1 ATP 96.7 0.0059 1.3E-07 59.7 8.4 36 32-70 68-103 (274)
243 KOG1514 Origin recognition com 96.7 0.021 4.7E-07 61.6 13.0 185 9-194 395-626 (767)
244 PRK06964 DNA polymerase III su 96.7 0.036 7.8E-07 56.6 14.2 80 99-189 131-225 (342)
245 PF13177 DNA_pol3_delta2: DNA 96.7 0.0098 2.1E-07 54.0 9.1 42 14-57 1-43 (162)
246 KOG0727 26S proteasome regulat 96.7 0.0058 1.3E-07 57.1 7.5 89 12-112 157-260 (408)
247 COG0464 SpoVK ATPases of the A 96.7 0.01 2.3E-07 64.9 10.9 140 32-181 275-445 (494)
248 KOG2739 Leucine-rich acidic nu 96.7 0.0012 2.6E-08 62.5 3.0 85 338-423 42-130 (260)
249 PRK15455 PrkA family serine pr 96.6 0.0025 5.4E-08 67.9 5.3 48 10-57 76-127 (644)
250 COG2607 Predicted ATPase (AAA+ 96.6 0.014 3E-07 54.6 9.4 86 10-110 60-149 (287)
251 PRK08939 primosomal protein Dn 96.6 0.0052 1.1E-07 61.9 7.4 56 14-72 135-192 (306)
252 KOG2739 Leucine-rich acidic nu 96.6 0.0011 2.3E-08 62.8 2.2 81 360-442 42-126 (260)
253 KOG1969 DNA replication checkp 96.6 0.003 6.5E-08 68.0 5.4 68 31-112 324-399 (877)
254 PRK07667 uridine kinase; Provi 96.6 0.0036 7.8E-08 58.8 5.4 39 19-57 3-41 (193)
255 PRK10733 hflB ATP-dependent me 96.5 0.0094 2E-07 66.9 9.3 160 11-182 153-356 (644)
256 PF00448 SRP54: SRP54-type pro 96.5 0.0047 1E-07 57.9 5.9 37 33-72 1-37 (196)
257 cd00561 CobA_CobO_BtuR ATP:cor 96.5 0.0098 2.1E-07 53.1 7.4 24 34-57 3-26 (159)
258 COG0572 Udk Uridine kinase [Nu 96.5 0.0093 2E-07 55.7 7.5 27 31-57 6-32 (218)
259 TIGR02012 tigrfam_recA protein 96.5 0.0047 1E-07 62.1 5.8 39 31-72 53-91 (321)
260 KOG1947 Leucine rich repeat pr 96.5 0.00061 1.3E-08 74.7 -0.7 110 360-469 187-307 (482)
261 cd00983 recA RecA is a bacter 96.4 0.0071 1.5E-07 60.9 6.8 39 31-72 53-91 (325)
262 cd01123 Rad51_DMC1_radA Rad51_ 96.4 0.01 2.2E-07 57.9 7.9 43 31-74 17-63 (235)
263 PF01583 APS_kinase: Adenylyls 96.4 0.01 2.2E-07 52.8 7.0 37 33-72 2-38 (156)
264 PRK13531 regulatory ATPase Rav 96.4 0.0042 9E-08 65.4 5.3 45 9-57 19-63 (498)
265 PRK09361 radB DNA repair and r 96.4 0.017 3.6E-07 56.0 9.3 40 31-73 21-60 (225)
266 PF10236 DAP3: Mitochondrial r 96.4 0.053 1.2E-06 54.9 13.1 49 138-186 258-306 (309)
267 cd01120 RecA-like_NTPases RecA 96.4 0.0083 1.8E-07 54.6 6.8 35 35-72 1-35 (165)
268 TIGR03345 VI_ClpV1 type VI sec 96.4 0.012 2.5E-07 68.1 9.2 48 10-57 566-620 (852)
269 cd01131 PilT Pilus retraction 96.4 0.0079 1.7E-07 56.8 6.6 80 34-116 2-90 (198)
270 COG4088 Predicted nucleotide k 96.4 0.0071 1.5E-07 55.0 5.7 24 34-57 2-25 (261)
271 cd01129 PulE-GspE PulE/GspE Th 96.4 0.012 2.6E-07 58.1 8.0 99 13-116 62-165 (264)
272 COG0470 HolB ATPase involved i 96.4 0.015 3.2E-07 60.0 9.1 47 11-57 2-48 (325)
273 PRK09354 recA recombinase A; P 96.4 0.0084 1.8E-07 60.8 6.9 39 31-72 58-96 (349)
274 PF08433 KTI12: Chromatin asso 96.3 0.0084 1.8E-07 59.1 6.7 76 34-113 2-83 (270)
275 cd01394 radB RadB. The archaea 96.3 0.025 5.4E-07 54.4 9.6 39 31-72 17-55 (218)
276 PF07724 AAA_2: AAA domain (Cd 96.3 0.0063 1.4E-07 55.6 5.1 42 33-77 3-45 (171)
277 PRK08699 DNA polymerase III su 96.3 0.028 6.1E-07 57.2 10.3 26 32-57 20-45 (325)
278 PF03308 ArgK: ArgK protein; 96.3 0.009 2E-07 57.1 6.1 40 18-57 14-53 (266)
279 TIGR01817 nifA Nif-specific re 96.3 0.017 3.8E-07 63.7 9.3 49 9-57 195-243 (534)
280 PRK05342 clpX ATP-dependent pr 96.2 0.0093 2E-07 62.6 6.7 48 10-57 71-132 (412)
281 CHL00095 clpC Clp protease ATP 96.2 0.014 3.1E-07 67.7 8.8 100 10-112 509-623 (821)
282 KOG0739 AAA+-type ATPase [Post 96.2 0.022 4.7E-07 54.9 8.3 101 3-112 124-237 (439)
283 KOG1947 Leucine rich repeat pr 96.2 0.0017 3.7E-08 71.1 1.1 174 382-581 185-373 (482)
284 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.022 4.8E-07 50.6 8.0 73 32-112 25-100 (144)
285 PRK10865 protein disaggregatio 96.2 0.015 3.3E-07 67.4 8.7 62 10-74 568-636 (857)
286 TIGR02639 ClpA ATP-dependent C 96.2 0.016 3.5E-07 66.3 8.8 48 10-57 454-508 (731)
287 TIGR00382 clpX endopeptidase C 96.1 0.021 4.5E-07 59.7 8.6 48 10-57 77-140 (413)
288 COG0542 clpA ATP-binding subun 96.1 0.015 3.2E-07 64.8 7.7 100 10-112 491-605 (786)
289 PF00485 PRK: Phosphoribulokin 96.1 0.0045 9.7E-08 58.3 3.4 23 35-57 1-23 (194)
290 PF13238 AAA_18: AAA domain; P 96.1 0.0044 9.4E-08 53.9 3.1 22 36-57 1-22 (129)
291 KOG2228 Origin recognition com 96.1 0.03 6.5E-07 55.1 8.7 49 9-57 23-73 (408)
292 COG5238 RNA1 Ran GTPase-activa 96.1 0.0046 9.9E-08 58.6 3.1 196 381-617 26-252 (388)
293 KOG0743 AAA+-type ATPase [Post 96.1 0.053 1.1E-06 55.8 10.8 139 36-196 238-417 (457)
294 TIGR03346 chaperone_ClpB ATP-d 96.1 0.019 4.1E-07 66.8 8.8 48 10-57 565-619 (852)
295 cd02019 NK Nucleoside/nucleoti 96.1 0.0053 1.2E-07 46.5 2.9 23 35-57 1-23 (69)
296 COG0465 HflB ATP-dependent Zn 96.0 0.03 6.4E-07 60.6 9.4 95 10-112 150-254 (596)
297 PRK15429 formate hydrogenlyase 96.0 0.1 2.2E-06 59.5 14.5 48 10-57 376-423 (686)
298 PTZ00301 uridine kinase; Provi 96.0 0.0058 1.2E-07 57.9 3.7 25 33-57 3-27 (210)
299 TIGR00150 HI0065_YjeE ATPase, 96.0 0.013 2.7E-07 50.7 5.3 41 17-57 6-46 (133)
300 cd01393 recA_like RecA is a b 96.0 0.042 9E-07 53.2 9.8 40 31-73 17-62 (226)
301 PRK06547 hypothetical protein; 96.0 0.01 2.2E-07 54.4 5.1 27 31-57 13-39 (172)
302 PF00158 Sigma54_activat: Sigm 96.0 0.0082 1.8E-07 54.7 4.4 46 12-57 1-46 (168)
303 KOG1970 Checkpoint RAD17-RFC c 96.0 0.13 2.8E-06 54.2 13.4 50 16-70 88-142 (634)
304 PRK11034 clpA ATP-dependent Cl 96.0 0.015 3.2E-07 66.0 7.2 48 10-57 458-512 (758)
305 COG1224 TIP49 DNA helicase TIP 96.0 0.018 3.9E-07 57.0 6.7 58 7-65 36-96 (450)
306 PRK08233 hypothetical protein; 96.0 0.0064 1.4E-07 56.6 3.6 25 33-57 3-27 (182)
307 PRK11889 flhF flagellar biosyn 95.9 0.032 7E-07 57.1 8.5 26 32-57 240-265 (436)
308 PF00910 RNA_helicase: RNA hel 95.9 0.0054 1.2E-07 51.3 2.6 22 36-57 1-22 (107)
309 COG1484 DnaC DNA replication p 95.9 0.02 4.4E-07 56.1 7.0 76 32-112 104-179 (254)
310 PRK09270 nucleoside triphospha 95.9 0.013 2.9E-07 56.8 5.7 28 30-57 30-57 (229)
311 COG0467 RAD55 RecA-superfamily 95.9 0.032 6.9E-07 55.3 8.5 41 31-74 21-61 (260)
312 PF00560 LRR_1: Leucine Rich R 95.9 0.0031 6.7E-08 35.4 0.7 18 411-428 2-19 (22)
313 PRK05480 uridine/cytidine kina 95.8 0.0086 1.9E-07 57.2 4.0 27 31-57 4-30 (209)
314 PF08423 Rad51: Rad51; InterP 95.8 0.02 4.4E-07 56.2 6.6 41 32-73 37-81 (256)
315 cd03216 ABC_Carb_Monos_I This 95.8 0.066 1.4E-06 48.7 9.6 77 32-112 25-112 (163)
316 TIGR03878 thermo_KaiC_2 KaiC d 95.8 0.032 7E-07 55.1 8.1 38 32-72 35-72 (259)
317 PF13671 AAA_33: AAA domain; P 95.8 0.0076 1.6E-07 53.6 3.3 23 35-57 1-23 (143)
318 COG1703 ArgK Putative periplas 95.8 0.016 3.4E-07 56.2 5.3 39 19-57 37-75 (323)
319 TIGR00235 udk uridine kinase. 95.8 0.01 2.2E-07 56.6 4.0 27 31-57 4-30 (207)
320 PRK12678 transcription termina 95.7 0.053 1.1E-06 57.9 9.5 78 32-111 415-514 (672)
321 PF13306 LRR_5: Leucine rich r 95.7 0.023 4.9E-07 49.4 5.8 102 357-465 8-111 (129)
322 PRK06762 hypothetical protein; 95.7 0.0097 2.1E-07 54.5 3.6 24 34-57 3-26 (166)
323 PF14532 Sigma54_activ_2: Sigm 95.7 0.0075 1.6E-07 53.2 2.7 45 13-57 1-45 (138)
324 COG1102 Cmk Cytidylate kinase 95.7 0.0087 1.9E-07 52.3 2.9 23 35-57 2-24 (179)
325 KOG0726 26S proteasome regulat 95.7 0.021 4.5E-07 54.8 5.7 91 10-112 185-290 (440)
326 PF03969 AFG1_ATPase: AFG1-lik 95.7 0.0077 1.7E-07 62.0 3.1 93 32-130 61-169 (362)
327 TIGR01420 pilT_fam pilus retra 95.7 0.034 7.4E-07 57.4 7.9 81 33-116 122-211 (343)
328 cd03222 ABC_RNaseL_inhibitor T 95.7 0.053 1.1E-06 49.9 8.3 78 31-112 23-101 (177)
329 TIGR03877 thermo_KaiC_1 KaiC d 95.7 0.043 9.4E-07 53.5 8.2 40 31-73 19-58 (237)
330 PF00154 RecA: recA bacterial 95.7 0.032 6.8E-07 56.1 7.2 78 32-112 52-143 (322)
331 COG1066 Sms Predicted ATP-depe 95.6 0.042 9.2E-07 55.8 7.9 77 32-112 92-180 (456)
332 TIGR01360 aden_kin_iso1 adenyl 95.6 0.01 2.2E-07 55.6 3.5 26 32-57 2-27 (188)
333 cd01124 KaiC KaiC is a circadi 95.6 0.035 7.5E-07 51.9 7.1 35 35-72 1-35 (187)
334 PRK06067 flagellar accessory p 95.6 0.052 1.1E-06 52.9 8.4 39 31-72 23-61 (234)
335 PRK12723 flagellar biosynthesi 95.6 0.072 1.6E-06 55.4 9.7 26 32-57 173-198 (388)
336 PRK05973 replicative DNA helic 95.5 0.049 1.1E-06 52.4 7.8 38 32-72 63-100 (237)
337 PRK03839 putative kinase; Prov 95.5 0.011 2.4E-07 54.9 3.4 23 35-57 2-24 (180)
338 PF08298 AAA_PrkA: PrkA AAA do 95.5 0.024 5.2E-07 57.0 5.8 48 10-57 61-112 (358)
339 PRK10867 signal recognition pa 95.5 0.06 1.3E-06 56.8 9.0 26 32-57 99-124 (433)
340 TIGR00390 hslU ATP-dependent p 95.5 0.021 4.6E-07 58.9 5.5 49 9-57 11-71 (441)
341 cd01121 Sms Sms (bacterial rad 95.5 0.041 8.9E-07 57.0 7.6 38 32-72 81-118 (372)
342 KOG0735 AAA+-type ATPase [Post 95.5 0.073 1.6E-06 57.6 9.4 139 34-185 702-872 (952)
343 KOG1532 GTPase XAB1, interacts 95.5 0.036 7.7E-07 52.8 6.4 27 31-57 17-43 (366)
344 PF06745 KaiC: KaiC; InterPro 95.5 0.024 5.3E-07 54.8 5.7 38 32-72 18-56 (226)
345 PRK04301 radA DNA repair and r 95.4 0.059 1.3E-06 55.1 8.6 43 31-74 100-146 (317)
346 KOG2123 Uncharacterized conser 95.4 0.0022 4.8E-08 60.9 -1.6 98 338-438 18-123 (388)
347 cd03115 SRP The signal recogni 95.4 0.036 7.8E-07 51.1 6.4 23 35-57 2-24 (173)
348 KOG0738 AAA+-type ATPase [Post 95.4 0.023 5E-07 56.9 5.1 48 10-57 212-269 (491)
349 PRK10536 hypothetical protein; 95.4 0.033 7.1E-07 53.7 6.1 55 10-69 55-109 (262)
350 PRK04040 adenylate kinase; Pro 95.4 0.014 3E-07 54.5 3.5 24 34-57 3-26 (188)
351 PRK10463 hydrogenase nickel in 95.4 0.043 9.2E-07 54.2 7.0 27 31-57 102-128 (290)
352 PF07728 AAA_5: AAA domain (dy 95.4 0.012 2.7E-07 51.9 3.1 22 36-57 2-23 (139)
353 KOG0742 AAA+-type ATPase [Post 95.4 0.075 1.6E-06 53.6 8.6 70 32-111 383-454 (630)
354 PRK04296 thymidine kinase; Pro 95.4 0.056 1.2E-06 50.6 7.5 24 34-57 3-26 (190)
355 TIGR02238 recomb_DMC1 meiotic 95.4 0.06 1.3E-06 54.5 8.2 43 31-74 94-140 (313)
356 TIGR01359 UMP_CMP_kin_fam UMP- 95.3 0.012 2.5E-07 54.9 2.8 23 35-57 1-23 (183)
357 TIGR03574 selen_PSTK L-seryl-t 95.3 0.03 6.4E-07 55.1 5.8 23 35-57 1-23 (249)
358 PF13481 AAA_25: AAA domain; P 95.3 0.048 1E-06 51.3 7.0 40 33-72 32-78 (193)
359 PF03205 MobB: Molybdopterin g 95.3 0.025 5.4E-07 49.8 4.7 37 34-72 1-37 (140)
360 COG1875 NYN ribonuclease and A 95.3 0.045 9.7E-07 54.6 6.7 54 12-67 226-279 (436)
361 TIGR00416 sms DNA repair prote 95.3 0.044 9.5E-07 58.6 7.3 39 31-72 92-130 (454)
362 cd01130 VirB11-like_ATPase Typ 95.3 0.054 1.2E-06 50.5 7.1 25 33-57 25-49 (186)
363 PRK00771 signal recognition pa 95.3 0.11 2.4E-06 54.9 10.1 26 32-57 94-119 (437)
364 TIGR02655 circ_KaiC circadian 95.3 0.057 1.2E-06 58.6 8.2 49 21-72 251-299 (484)
365 COG1936 Predicted nucleotide k 95.3 0.015 3.2E-07 51.7 3.0 20 35-54 2-21 (180)
366 COG2884 FtsE Predicted ATPase 95.2 0.099 2.1E-06 47.3 8.1 27 31-57 26-52 (223)
367 PRK05439 pantothenate kinase; 95.2 0.029 6.3E-07 56.2 5.4 27 31-57 84-110 (311)
368 COG4133 CcmA ABC-type transpor 95.2 0.073 1.6E-06 48.1 7.2 25 33-57 28-52 (209)
369 PRK07132 DNA polymerase III su 95.2 0.29 6.2E-06 49.1 12.4 150 20-188 6-184 (299)
370 PRK00625 shikimate kinase; Pro 95.2 0.017 3.7E-07 52.9 3.4 23 35-57 2-24 (173)
371 PRK05703 flhF flagellar biosyn 95.2 0.09 1.9E-06 55.7 9.2 39 33-72 221-259 (424)
372 PRK00131 aroK shikimate kinase 95.2 0.017 3.7E-07 53.3 3.5 25 33-57 4-28 (175)
373 cd02024 NRK1 Nicotinamide ribo 95.2 0.014 3E-07 54.0 2.8 23 35-57 1-23 (187)
374 cd01135 V_A-ATPase_B V/A-type 95.2 0.11 2.4E-06 50.8 9.0 41 32-72 68-109 (276)
375 cd00267 ABC_ATPase ABC (ATP-bi 95.1 0.15 3.2E-06 46.1 9.3 77 32-112 24-110 (157)
376 PRK05201 hslU ATP-dependent pr 95.1 0.04 8.7E-07 57.0 6.1 49 9-57 14-74 (443)
377 PRK14974 cell division protein 95.1 0.12 2.5E-06 52.8 9.4 26 32-57 139-164 (336)
378 PRK00889 adenylylsulfate kinas 95.1 0.032 6.9E-07 51.6 5.0 26 32-57 3-28 (175)
379 PF07726 AAA_3: ATPase family 95.1 0.013 2.8E-07 49.7 2.0 28 35-65 1-28 (131)
380 COG0468 RecA RecA/RadA recombi 95.1 0.12 2.6E-06 50.9 9.1 41 31-74 58-98 (279)
381 PF02562 PhoH: PhoH-like prote 95.1 0.039 8.5E-07 51.6 5.5 53 15-72 5-57 (205)
382 cd02027 APSK Adenosine 5'-phos 95.1 0.061 1.3E-06 48.1 6.6 23 35-57 1-23 (149)
383 cd02025 PanK Pantothenate kina 95.1 0.015 3.3E-07 55.7 2.8 23 35-57 1-23 (220)
384 PF12775 AAA_7: P-loop contain 95.1 0.016 3.5E-07 57.4 3.0 35 20-57 23-57 (272)
385 PF13245 AAA_19: Part of AAA d 95.1 0.023 5E-07 43.9 3.2 25 33-57 10-34 (76)
386 KOG3347 Predicted nucleotide k 95.1 0.04 8.7E-07 47.4 4.9 25 33-57 7-31 (176)
387 TIGR03499 FlhF flagellar biosy 95.1 0.056 1.2E-06 54.1 6.9 26 32-57 193-218 (282)
388 CHL00206 ycf2 Ycf2; Provisiona 95.1 0.14 3.1E-06 62.1 11.0 26 32-57 1629-1654(2281)
389 cd02028 UMPK_like Uridine mono 95.1 0.023 5E-07 52.6 3.8 23 35-57 1-23 (179)
390 PLN03187 meiotic recombination 95.0 0.073 1.6E-06 54.3 7.7 43 31-74 124-170 (344)
391 PF03266 NTPase_1: NTPase; In 95.0 0.02 4.4E-07 52.1 3.4 23 35-57 1-23 (168)
392 TIGR01425 SRP54_euk signal rec 95.0 0.055 1.2E-06 56.7 6.9 26 32-57 99-124 (429)
393 PF00006 ATP-synt_ab: ATP synt 95.0 0.13 2.9E-06 48.7 8.9 35 33-72 15-49 (215)
394 TIGR00064 ftsY signal recognit 95.0 0.065 1.4E-06 53.1 7.1 39 31-72 70-108 (272)
395 PF13306 LRR_5: Leucine rich r 95.0 0.044 9.6E-07 47.5 5.4 113 339-459 12-128 (129)
396 PF05970 PIF1: PIF1-like helic 95.0 0.06 1.3E-06 56.2 7.2 38 18-57 9-46 (364)
397 PRK12597 F0F1 ATP synthase sub 95.0 0.088 1.9E-06 55.8 8.3 39 32-72 142-180 (461)
398 cd02023 UMPK Uridine monophosp 95.0 0.017 3.6E-07 54.7 2.8 23 35-57 1-23 (198)
399 PRK05537 bifunctional sulfate 95.0 0.039 8.4E-07 60.7 5.9 48 10-57 369-416 (568)
400 PHA02244 ATPase-like protein 95.0 0.028 6.2E-07 57.1 4.4 49 9-57 95-143 (383)
401 TIGR00554 panK_bact pantothena 95.0 0.033 7.2E-07 55.4 4.8 27 31-57 60-86 (290)
402 TIGR02322 phosphon_PhnN phosph 94.9 0.022 4.7E-07 52.9 3.4 24 34-57 2-25 (179)
403 cd00227 CPT Chloramphenicol (C 94.9 0.022 4.8E-07 52.6 3.4 24 34-57 3-26 (175)
404 cd02021 GntK Gluconate kinase 94.9 0.018 4E-07 51.6 2.8 23 35-57 1-23 (150)
405 COG1428 Deoxynucleoside kinase 94.9 0.023 5E-07 52.4 3.3 25 33-57 4-28 (216)
406 KOG1051 Chaperone HSP104 and r 94.9 0.094 2E-06 59.5 8.7 100 10-112 562-672 (898)
407 TIGR00708 cobA cob(I)alamin ad 94.9 0.084 1.8E-06 47.8 6.8 26 32-57 4-29 (173)
408 PRK09435 membrane ATPase/prote 94.9 0.073 1.6E-06 54.1 7.2 38 20-57 43-80 (332)
409 cd03283 ABC_MutS-like MutS-lik 94.9 0.13 2.9E-06 48.4 8.6 24 34-57 26-49 (199)
410 KOG0651 26S proteasome regulat 94.9 0.058 1.3E-06 52.5 6.0 69 32-112 165-237 (388)
411 COG0563 Adk Adenylate kinase a 94.9 0.024 5.1E-07 52.2 3.3 23 35-57 2-24 (178)
412 cd02020 CMPK Cytidine monophos 94.8 0.021 4.5E-07 51.0 2.9 23 35-57 1-23 (147)
413 TIGR00959 ffh signal recogniti 94.8 0.083 1.8E-06 55.7 7.7 26 32-57 98-123 (428)
414 PRK14721 flhF flagellar biosyn 94.8 0.079 1.7E-06 55.5 7.5 26 32-57 190-215 (420)
415 PF00625 Guanylate_kin: Guanyl 94.8 0.035 7.5E-07 51.7 4.4 37 33-72 2-38 (183)
416 KOG0094 GTPase Rab6/YPT6/Ryh1, 94.8 0.24 5.3E-06 44.8 9.3 84 33-118 22-113 (221)
417 TIGR02533 type_II_gspE general 94.8 0.092 2E-06 56.7 8.1 98 13-115 224-326 (486)
418 COG0529 CysC Adenylylsulfate k 94.8 0.15 3.3E-06 45.5 7.9 27 31-57 21-47 (197)
419 PRK13407 bchI magnesium chelat 94.8 0.041 8.9E-07 56.0 5.2 46 10-57 8-53 (334)
420 PRK06217 hypothetical protein; 94.8 0.025 5.4E-07 52.7 3.3 23 35-57 3-25 (183)
421 PRK08972 fliI flagellum-specif 94.8 0.13 2.9E-06 53.8 8.8 26 32-57 161-186 (444)
422 PF01078 Mg_chelatase: Magnesi 94.7 0.054 1.2E-06 50.4 5.2 44 10-57 3-46 (206)
423 PRK03846 adenylylsulfate kinas 94.7 0.045 9.8E-07 51.7 5.0 27 31-57 22-48 (198)
424 PRK15453 phosphoribulokinase; 94.7 0.046 9.9E-07 53.4 4.9 27 31-57 3-29 (290)
425 PRK08149 ATP synthase SpaL; Va 94.7 0.14 3E-06 53.7 8.8 26 32-57 150-175 (428)
426 PRK10751 molybdopterin-guanine 94.7 0.036 7.8E-07 50.4 4.0 26 32-57 5-30 (173)
427 TIGR02239 recomb_RAD51 DNA rep 94.7 0.11 2.3E-06 52.8 7.8 43 31-74 94-140 (316)
428 cd00071 GMPK Guanosine monopho 94.7 0.027 5.9E-07 49.5 3.1 23 35-57 1-23 (137)
429 TIGR01650 PD_CobS cobaltochela 94.7 0.052 1.1E-06 54.5 5.4 44 10-57 45-88 (327)
430 PRK14530 adenylate kinase; Pro 94.7 0.027 5.9E-07 54.0 3.3 24 34-57 4-27 (215)
431 cd03230 ABC_DR_subfamily_A Thi 94.6 0.21 4.6E-06 45.9 9.1 26 32-57 25-50 (173)
432 PRK11608 pspF phage shock prot 94.6 0.041 8.8E-07 56.4 4.7 48 10-57 6-53 (326)
433 PRK09280 F0F1 ATP synthase sub 94.6 0.15 3.3E-06 53.8 8.9 39 32-72 143-181 (463)
434 PRK14738 gmk guanylate kinase; 94.6 0.032 6.9E-07 53.0 3.6 26 31-56 11-36 (206)
435 PTZ00035 Rad51 protein; Provis 94.6 0.15 3.3E-06 52.2 8.7 43 31-74 116-162 (337)
436 PRK11823 DNA repair protein Ra 94.6 0.12 2.5E-06 55.4 8.2 38 32-72 79-116 (446)
437 PRK13947 shikimate kinase; Pro 94.6 0.029 6.2E-07 51.6 3.1 23 35-57 3-25 (171)
438 cd03243 ABC_MutS_homologs The 94.6 0.12 2.5E-06 49.0 7.4 23 33-55 29-51 (202)
439 TIGR03263 guanyl_kin guanylate 94.6 0.027 5.9E-07 52.3 3.0 24 34-57 2-25 (180)
440 PRK13949 shikimate kinase; Pro 94.5 0.031 6.8E-07 51.1 3.3 23 35-57 3-25 (169)
441 COG3640 CooC CO dehydrogenase 94.5 0.045 9.7E-07 51.2 4.2 23 35-57 2-24 (255)
442 PRK12726 flagellar biosynthesi 94.5 0.11 2.3E-06 53.2 7.2 38 32-72 205-242 (407)
443 TIGR02640 gas_vesic_GvpN gas v 94.5 0.06 1.3E-06 53.3 5.4 36 18-57 10-45 (262)
444 TIGR02030 BchI-ChlI magnesium 94.5 0.059 1.3E-06 55.0 5.4 46 10-57 4-49 (337)
445 PRK12339 2-phosphoglycerate ki 94.5 0.037 8E-07 51.9 3.7 25 33-57 3-27 (197)
446 TIGR02236 recomb_radA DNA repa 94.5 0.16 3.5E-06 51.8 8.7 42 32-74 94-139 (310)
447 PRK08927 fliI flagellum-specif 94.5 0.21 4.6E-06 52.5 9.5 26 32-57 157-182 (442)
448 PRK08533 flagellar accessory p 94.5 0.13 2.8E-06 49.8 7.5 39 31-72 22-60 (230)
449 COG0714 MoxR-like ATPases [Gen 94.4 0.064 1.4E-06 55.2 5.7 45 9-57 23-67 (329)
450 TIGR01313 therm_gnt_kin carboh 94.4 0.027 5.8E-07 51.3 2.6 22 36-57 1-22 (163)
451 TIGR03305 alt_F1F0_F1_bet alte 94.4 0.14 3.1E-06 53.9 8.1 39 32-72 137-175 (449)
452 TIGR02974 phageshock_pspF psp 94.4 0.051 1.1E-06 55.7 4.8 46 12-57 1-46 (329)
453 PRK13765 ATP-dependent proteas 94.4 0.049 1.1E-06 60.4 4.9 57 10-72 31-87 (637)
454 PRK00300 gmk guanylate kinase; 94.4 0.036 7.7E-07 52.8 3.5 26 32-57 4-29 (205)
455 KOG0473 Leucine-rich repeat pr 94.4 0.0035 7.6E-08 58.0 -3.2 86 356-443 37-122 (326)
456 PRK14527 adenylate kinase; Pro 94.3 0.04 8.7E-07 51.7 3.7 26 32-57 5-30 (191)
457 PF03193 DUF258: Protein of un 94.3 0.064 1.4E-06 48.0 4.6 37 16-57 23-59 (161)
458 PF00437 T2SE: Type II/IV secr 94.3 0.077 1.7E-06 53.0 5.9 99 16-117 110-214 (270)
459 PF13504 LRR_7: Leucine rich r 94.3 0.031 6.8E-07 29.0 1.6 17 631-648 1-17 (17)
460 smart00534 MUTSac ATPase domai 94.3 0.1 2.2E-06 48.6 6.2 21 35-55 1-21 (185)
461 cd00464 SK Shikimate kinase (S 94.3 0.037 7.9E-07 49.8 3.2 22 36-57 2-23 (154)
462 PRK14737 gmk guanylate kinase; 94.3 0.041 9E-07 51.1 3.5 26 32-57 3-28 (186)
463 TIGR01069 mutS2 MutS2 family p 94.3 0.18 3.9E-06 57.7 9.3 171 32-213 321-524 (771)
464 PF03029 ATP_bind_1: Conserved 94.3 0.048 1E-06 52.9 4.0 32 38-72 1-32 (238)
465 TIGR01039 atpD ATP synthase, F 94.3 0.19 4.2E-06 52.9 8.6 39 32-72 142-180 (461)
466 cd01136 ATPase_flagellum-secre 94.2 0.19 4.1E-06 50.8 8.4 26 32-57 68-93 (326)
467 PRK05986 cob(I)alamin adenolsy 94.2 0.15 3.3E-06 46.9 6.9 26 32-57 21-46 (191)
468 PF13504 LRR_7: Leucine rich r 94.2 0.03 6.4E-07 29.1 1.4 16 410-425 2-17 (17)
469 COG2804 PulE Type II secretory 94.2 0.21 4.6E-06 52.6 8.8 81 31-114 256-341 (500)
470 PF08477 Miro: Miro-like prote 94.2 0.045 9.7E-07 46.7 3.4 23 35-57 1-23 (119)
471 PLN02200 adenylate kinase fami 94.2 0.047 1E-06 52.9 3.8 26 32-57 42-67 (234)
472 PLN02318 phosphoribulokinase/u 94.2 0.062 1.3E-06 57.9 5.0 28 30-57 62-89 (656)
473 PRK09519 recA DNA recombinatio 94.2 0.11 2.4E-06 58.5 7.1 78 31-111 58-149 (790)
474 PF13521 AAA_28: AAA domain; P 94.2 0.037 7.9E-07 50.5 2.9 21 36-56 2-22 (163)
475 cd00820 PEPCK_HprK Phosphoenol 94.1 0.052 1.1E-06 44.8 3.4 23 32-54 14-36 (107)
476 PRK06936 type III secretion sy 94.1 0.24 5.2E-06 52.0 9.1 36 32-72 161-196 (439)
477 COG2019 AdkA Archaeal adenylat 94.1 0.05 1.1E-06 48.0 3.4 25 33-57 4-28 (189)
478 KOG2702 Predicted panthothenat 94.1 0.047 1E-06 50.6 3.3 48 15-64 103-150 (323)
479 COG0194 Gmk Guanylate kinase [ 94.1 0.052 1.1E-06 49.1 3.5 25 33-57 4-28 (191)
480 PRK13975 thymidylate kinase; P 94.1 0.046 1E-06 51.5 3.6 24 34-57 3-26 (196)
481 TIGR00750 lao LAO/AO transport 94.1 0.1 2.2E-06 52.8 6.2 39 19-57 20-58 (300)
482 PRK00409 recombination and DNA 94.1 0.24 5.1E-06 56.9 9.7 171 31-213 325-529 (782)
483 TIGR00764 lon_rel lon-related 94.1 0.085 1.8E-06 58.7 6.0 44 10-57 18-61 (608)
484 PRK10078 ribose 1,5-bisphospho 94.1 0.042 9.1E-07 51.3 3.1 24 34-57 3-26 (186)
485 PRK12727 flagellar biosynthesi 94.1 0.13 2.8E-06 55.0 7.0 26 32-57 349-374 (559)
486 PRK13948 shikimate kinase; Pro 94.0 0.05 1.1E-06 50.2 3.5 27 31-57 8-34 (182)
487 CHL00081 chlI Mg-protoporyphyr 94.0 0.073 1.6E-06 54.4 5.0 46 10-57 17-62 (350)
488 PF13604 AAA_30: AAA domain; P 94.0 0.12 2.6E-06 48.6 6.1 36 20-57 7-42 (196)
489 PLN03186 DNA repair protein RA 94.0 0.17 3.7E-06 51.8 7.6 44 31-75 121-168 (342)
490 PLN02165 adenylate isopentenyl 94.0 0.041 8.9E-07 55.3 3.1 27 31-57 41-67 (334)
491 PRK05057 aroK shikimate kinase 94.0 0.048 1E-06 50.1 3.3 25 33-57 4-28 (172)
492 cd01132 F1_ATPase_alpha F1 ATP 94.0 0.25 5.4E-06 48.4 8.3 24 32-55 68-92 (274)
493 PF02367 UPF0079: Uncharacteri 94.0 0.082 1.8E-06 44.9 4.4 27 31-57 13-39 (123)
494 PRK04182 cytidylate kinase; Pr 94.0 0.048 1E-06 50.6 3.3 23 35-57 2-24 (180)
495 TIGR02525 plasmid_TraJ plasmid 94.0 0.19 4E-06 52.1 7.9 82 33-116 149-241 (372)
496 PF13555 AAA_29: P-loop contai 94.0 0.065 1.4E-06 39.1 3.2 24 34-57 24-47 (62)
497 TIGR02173 cyt_kin_arch cytidyl 93.9 0.05 1.1E-06 50.0 3.4 23 35-57 2-24 (171)
498 PRK06761 hypothetical protein; 93.9 0.07 1.5E-06 52.7 4.5 24 34-57 4-27 (282)
499 PRK07594 type III secretion sy 93.9 0.24 5.3E-06 52.0 8.7 27 31-57 153-179 (433)
500 KOG1942 DNA helicase, TBP-inte 93.9 0.13 2.8E-06 49.6 5.9 49 9-57 37-88 (456)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-75 Score=651.53 Aligned_cols=657 Identities=40% Similarity=0.682 Sum_probs=537.6
Q ss_pred cCCCCcc-cchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCC-------
Q 042597 6 LPVDHTV-VGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSD------- 77 (693)
Q Consensus 6 ~p~~~~~-vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~------- 77 (693)
.|..+.- ||.+..++++.+.|.. ++..+++|+||||+||||||+.++|+...++++|+.++||.+.+.+.
T Consensus 153 ~~~~~~~~VG~e~~~~kl~~~L~~--d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~ 230 (889)
T KOG4658|consen 153 RPIQSESDVGLETMLEKLWNRLME--DDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQT 230 (889)
T ss_pred CCCCccccccHHHHHHHHHHHhcc--CCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHH
Confidence 3443333 9999999999999998 45599999999999999999999999944999999999999943222
Q ss_pred --------chhhhhhchhHHHHHHHHHHccCcEEEEEeCcccccchhhh----------hhhhhcccchhhhhh-cCCce
Q 042597 78 --------DKKWKEKSLQDKAADISSILSRKKFVLLLDDIWERIDLKEL----------VSLFLTTRSVDVCDQ-MDAEK 138 (693)
Q Consensus 78 --------~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~----------~~iliTtr~~~~~~~-~~~~~ 138 (693)
...+.+...++++..+.+.|++|||++|+||||+..+|+.+ ++|++|||++.|+.. ++...
T Consensus 231 Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~ 310 (889)
T KOG4658|consen 231 ILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDY 310 (889)
T ss_pred HHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCc
Confidence 12233334478888999999999999999999999999998 899999999999998 66644
Q ss_pred -EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhcCCChhHHHHHHHHHhhh-hccc
Q 042597 139 -LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRAMKSQTKVGDWQRAIKKMRIS-ASKF 216 (693)
Q Consensus 139 -~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~l~~~~~~~~~~~~l~~l~~~-~~~~ 216 (693)
+++..|+.+|||++|++.++.......+.++.+|++++++|+|+|||+.++|+.|+.+.+..+|+++.+.+.+. ....
T Consensus 311 ~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~ 390 (889)
T KOG4658|consen 311 PIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADF 390 (889)
T ss_pred cccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCC
Confidence 99999999999999999999887666677899999999999999999999999999999999999999998887 4555
Q ss_pred CCCcHHHHHHHHHhhcCCCchhhhhHHhhhcccCCCCccChHHHHHHHHhcCccCCc-------hhhHHHHHHHHHccce
Q 042597 217 TGMDEKVFSRLKFSYDSLSTDELRSCLLYCCLYPKDYEIPRRELIDYWISEGFVDDF-------NDGCEFINDLLHACLL 289 (693)
Q Consensus 217 ~~~~~~~~~~l~~s~~~L~~~~~k~~~l~~~~f~~~~~i~~~~li~~w~~~g~~~~~-------~~~~~~l~~L~~~~ll 289 (693)
+++.+.+..++.+||+.||+ ++|.||+|||.||++|+|++++++..|+|+||+.+. ++|++++.+|+.++++
T Consensus 391 ~~~~~~i~~iLklSyd~L~~-~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll 469 (889)
T KOG4658|consen 391 SGMEESILPILKLSYDNLPE-ELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLL 469 (889)
T ss_pred CchhhhhHHhhhccHhhhhH-HHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHH
Confidence 66778999999999999995 999999999999999999999999999999998762 7899999999999999
Q ss_pred eecC----CCcEEechHHHHHHHHHHhhccccccceeeecCCCccCCcccccccccceeeeccccchhhccCCCCCccce
Q 042597 290 EEEG----DDHVKMHDMIREMLLWIACTVEKEKESFLVRAGIKLTEAPKVQEWEGAKRVSLMDNRILRLLEIPTCSRLIT 365 (693)
Q Consensus 290 ~~~~----~~~~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~ 365 (693)
.... ...|.|||++|+||.+++++.+..+++.++..+......|....+...|++++.++.+..++.-..+++|++
T Consensus 470 ~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~t 549 (889)
T KOG4658|consen 470 IEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRT 549 (889)
T ss_pred hhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccce
Confidence 9854 478999999999999999988877787777777667778999999999999999999999998888999999
Q ss_pred eeccccc--cccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCCCCCccChhhhcCCCCcEeccCCcc
Q 042597 366 LLLYENW--IEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTNITGLPQDLKALEKLRYLNLDHAY 443 (693)
Q Consensus 366 L~l~~~~--l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~ 443 (693)
|.+.+|. +..++.++|..++.|++|||++|..+.++|++++.|.+|+||+++++.++.+|.++++|.+|.+||+..+.
T Consensus 550 Lll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 550 LLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTG 629 (889)
T ss_pred EEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccccc
Confidence 9999995 88888888999999999999999899999999999999999999999999999999999999999999987
Q ss_pred cccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCceeEEEeechhhHhhhhccchhhh--
Q 042597 444 KLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFFKYPKLEL-- 521 (693)
Q Consensus 444 ~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~-- 521 (693)
.+..+|.. ...|++||+|.+....... ....+.++.+|++|+.+.....+......+.....+..
T Consensus 630 ~l~~~~~i-~~~L~~Lr~L~l~~s~~~~------------~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~ 696 (889)
T KOG4658|consen 630 RLESIPGI-LLELQSLRVLRLPRSALSN------------DKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLL 696 (889)
T ss_pred ccccccch-hhhcccccEEEeecccccc------------chhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHh
Confidence 77777543 5679999999997654111 44567788899999988887665522232332222221
Q ss_pred ---------------hhcc-cccceeEeccccccccc--c-----ccc-cCCccEEEEecc-ccccchhhhhcCCccEEE
Q 042597 522 ---------------ELEN-TNLEEMKIDSTEEVKKR--F-----RSG-FRSLNTVRVNGC-KVKDLTWLVFVQNLKELE 576 (693)
Q Consensus 522 ---------------~l~~-~~L~~L~i~~~~~~~~~--~-----~~~-~~~L~~L~l~~~-~l~~~~~l~~l~~L~~L~ 576 (693)
.+.. .+|++|.|..|...... + ... ++++.++.+.+| ....+.+..+.|+|+.|.
T Consensus 697 ~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~ 776 (889)
T KOG4658|consen 697 QSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLS 776 (889)
T ss_pred HhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEE
Confidence 1222 56677777666553211 0 011 445666666666 555666777789999999
Q ss_pred Eeccccchhhhcccc-cccccccccccCCcCCCccee-eccccccccccccCCCCCCCccEEEEccCCCCCCcCCCCCCC
Q 042597 577 ISFCHAVEDIIIVDK-LRDISEIIGLEHNFFAQLEYL-RILYGRNLKSIYPNPLPFPKLKKIQVLHCPELKKLPLNSSSP 654 (693)
Q Consensus 577 l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~~L-~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~ 654 (693)
+..|..++++.+... .....+ ....|.++..+ .+.+...+.++.+....+++|+.+.+..||+++++|......
T Consensus 777 l~~~~~~e~~i~~~k~~~~l~~----~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~ 852 (889)
T KOG4658|consen 777 LVSCRLLEDIIPKLKALLELKE----LILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLT 852 (889)
T ss_pred EecccccccCCCHHHHhhhccc----EEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccc
Confidence 999999998766422 222111 12346667777 477777888887777888889999999999999999886664
Q ss_pred C-C--cceEEechHHHHhhcccCCcCCCCCc
Q 042597 655 K-E--RRVVIEGRKEWWEELQWEDPATQNPF 682 (693)
Q Consensus 655 ~-~--~l~~~~~~~~~~~~l~~~~~~~~~~~ 682 (693)
. . ......-+.+|.+.+.|++++.+..+
T Consensus 853 i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 883 (889)
T KOG4658|consen 853 IVGCEEKLKEYPDGEWLEGVYWEDELTKLRF 883 (889)
T ss_pred eeccccceeecCCccceeeEEehhhhhhhhc
Confidence 2 2 33444445668999999999887655
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6.6e-58 Score=539.40 Aligned_cols=618 Identities=19% Similarity=0.291 Sum_probs=437.4
Q ss_pred CCcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEe---c---cCCc----
Q 042597 9 DHTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVI---G---FSDD---- 78 (693)
Q Consensus 9 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~---~---~~~~---- 78 (693)
.+.+|||++.++++..++....+++++|+|+||||+||||||+++|++. ..+|++.+|++.. . ....
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l---~~~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL---SRQFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred cccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH---hhcCCeEEEeeccccccchhhccccccc
Confidence 4789999999999999987666789999999999999999999999987 7889998887531 0 0000
Q ss_pred ----h-hhhhhchhH----------HHHHHHHHHccCcEEEEEeCcccccchhhh----------hhhhhcccchhhhhh
Q 042597 79 ----K-KWKEKSLQD----------KAADISSILSRKKFVLLLDDIWERIDLKEL----------VSLFLTTRSVDVCDQ 133 (693)
Q Consensus 79 ----~-~~~~~~~~~----------~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~----------~~iliTtr~~~~~~~ 133 (693)
. .....-..+ ....+++.++++|+|+||||||+..+++.+ ++||||||++.++..
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~ 339 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRA 339 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHh
Confidence 0 000000000 114567888999999999999998888777 789999999999887
Q ss_pred cCCce-EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhcCCChhHHHHHHHHHhhh
Q 042597 134 MDAEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRAMKSQTKVGDWQRAIKKMRIS 212 (693)
Q Consensus 134 ~~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~l~~~~~~~~~~~~l~~l~~~ 212 (693)
.+... |.++.+++++|+++|.++|+... ..+.++.+++++|+++|+|+|||++++|+.|+. ++..+|+.+++.+...
T Consensus 340 ~~~~~~~~v~~l~~~ea~~LF~~~Af~~~-~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~-k~~~~W~~~l~~L~~~ 417 (1153)
T PLN03210 340 HGIDHIYEVCLPSNELALEMFCRSAFKKN-SPPDGFMELASEVALRAGNLPLGLNVLGSYLRG-RDKEDWMDMLPRLRNG 417 (1153)
T ss_pred cCCCeEEEecCCCHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcC-CCHHHHHHHHHHHHhC
Confidence 76555 99999999999999999998654 334567889999999999999999999999998 5789999999988753
Q ss_pred hcccCCCcHHHHHHHHHhhcCCCchhhhhHHhhhcccCCCCccChHHHHHHHHhcCccCCchhhHHHHHHHHHccceeec
Q 042597 213 ASKFTGMDEKVFSRLKFSYDSLSTDELRSCLLYCCLYPKDYEIPRRELIDYWISEGFVDDFNDGCEFINDLLHACLLEEE 292 (693)
Q Consensus 213 ~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l~~~~f~~~~~i~~~~li~~w~~~g~~~~~~~~~~~l~~L~~~~ll~~~ 292 (693)
. +..+..++++||++|+++..|.||+++|+|+.++.+ ..+..|++.+... +...++.|++++|++..
T Consensus 418 ~------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~----~~~~l~~L~~ksLi~~~ 484 (1153)
T PLN03210 418 L------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLD----VNIGLKNLVDKSLIHVR 484 (1153)
T ss_pred c------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCC----chhChHHHHhcCCEEEc
Confidence 2 348999999999999874699999999999988654 3466677765432 33448999999999875
Q ss_pred CCCcEEechHHHHHHHHHHhhc--cccccceeeecCC------------C-------ccCC-------cccccccc----
Q 042597 293 GDDHVKMHDMIREMLLWIACTV--EKEKESFLVRAGI------------K-------LTEA-------PKVQEWEG---- 340 (693)
Q Consensus 293 ~~~~~~~hd~~~~~~~~~~~~~--~~~~~~~~~~~~~------------~-------~~~~-------~~~~~~~~---- 340 (693)
.+.+.|||++|+|++++++.. .+.++.+++.... . .... .....+.+
T Consensus 485 -~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L 563 (1153)
T PLN03210 485 -EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFL 563 (1153)
T ss_pred -CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEE
Confidence 468999999999999998754 2333444432210 0 0000 01122333
Q ss_pred ---------------------------cceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEcc
Q 042597 341 ---------------------------AKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALG 393 (693)
Q Consensus 341 ---------------------------l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~ 393 (693)
++.|.+.++.+..+|......+|+.|++.+|.+..++.+ +..+++|++|+|+
T Consensus 564 ~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~-~~~l~~Lk~L~Ls 642 (1153)
T PLN03210 564 KFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG-VHSLTGLRNIDLR 642 (1153)
T ss_pred EEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc-cccCCCCCEEECC
Confidence 444444444444555434567888888888888877665 6788999999998
Q ss_pred CCcchhhchHhhhccccccEEeeCCC-CCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCcc
Q 042597 394 RNFFLSKLRSGIANLVSLHHLDLSST-NITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGV 472 (693)
Q Consensus 394 ~~~~~~~~p~~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~ 472 (693)
+|..+..+| .++.+++|++|++++| .+..+|..++++++|+.|++++|..+..+|.. .++++|+.|++.+|.....
T Consensus 643 ~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~Lsgc~~L~~ 719 (1153)
T PLN03210 643 GSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG--INLKSLYRLNLSGCSRLKS 719 (1153)
T ss_pred CCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeCCCCCCccc
Confidence 886777777 5788899999999988 57778988999999999999998888888875 2788999999988865544
Q ss_pred ccccCcccc--cCcchhHHhhc---cCCCCceeEEEeechhhH-hhhhccchhhhhhcccccceeEeccccccc--cccc
Q 042597 473 IEEEGNVLC--DDAEPLMKELL---GLKHLNVLSWSFRSSLAV-QKFFKYPKLELELENTNLEEMKIDSTEEVK--KRFR 544 (693)
Q Consensus 473 ~~~~~~~~~--~~~~~~~~~l~---~L~~L~~l~~~~~~~~~~-~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~--~~~~ 544 (693)
++....... .-....+..++ ++++|..+.+..+....+ ..+..+..+. ....++|+.|.++++.... +...
T Consensus 720 ~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~-~~~~~sL~~L~Ls~n~~l~~lP~si 798 (1153)
T PLN03210 720 FPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLM-TMLSPSLTRLFLSDIPSLVELPSSI 798 (1153)
T ss_pred cccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhh-hhccccchheeCCCCCCccccChhh
Confidence 332110000 00000000111 223333333222110000 0000000000 0112578888888775443 2235
Q ss_pred cccCCccEEEEecc-ccccchhhhhcCCccEEEEeccccchhhhccc-cc-------ccccccccccCCcCCCcceeecc
Q 042597 545 SGFRSLNTVRVNGC-KVKDLTWLVFVQNLKELEISFCHAVEDIIIVD-KL-------RDISEIIGLEHNFFAQLEYLRIL 615 (693)
Q Consensus 545 ~~~~~L~~L~l~~~-~l~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~L~~L~l~ 615 (693)
..+++|+.|+|++| .+..+|....+++|+.|+|++|..+..++... .+ ..+.++. .....+++|+.|++.
T Consensus 799 ~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP-~si~~l~~L~~L~L~ 877 (1153)
T PLN03210 799 QNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVP-WWIEKFSNLSFLDMN 877 (1153)
T ss_pred hCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccCh-HHHhcCCCCCEEECC
Confidence 67889999999988 67777766678899999999988776654321 11 1111111 234678999999999
Q ss_pred ccccccccccCCCCCCCccEEEEccCCCCCCcCCCC
Q 042597 616 YGRNLKSIYPNPLPFPKLKKIQVLHCPELKKLPLNS 651 (693)
Q Consensus 616 ~~~~l~~l~~~~~~~~~L~~L~l~~c~~L~~lp~~~ 651 (693)
+|++++.++.....+++|+.|++++|++|+.++...
T Consensus 878 ~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~ 913 (1153)
T PLN03210 878 GCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNG 913 (1153)
T ss_pred CCCCcCccCcccccccCCCeeecCCCcccccccCCC
Confidence 999999999988999999999999999999876543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=7.4e-39 Score=324.78 Aligned_cols=257 Identities=32% Similarity=0.637 Sum_probs=208.7
Q ss_pred hHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchh--------------
Q 042597 15 QELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKK-------------- 80 (693)
Q Consensus 15 r~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~-------------- 80 (693)
||.++++|.++|....++.++|+|+|+||+||||||.+++++. ..+++|+.++|+++........
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~-~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~ 79 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDL-RIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDS 79 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHH-HHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-S
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccc-cccccccccccccccccccccccccccccccccccc
Confidence 7899999999999866889999999999999999999999986 4689999999999943222110
Q ss_pred --hhhhchhHHHHHHHHHHccCcEEEEEeCcccccchhhh----------hhhhhcccchhhhhhcCC--ceEEeccCCc
Q 042597 81 --WKEKSLQDKAADISSILSRKKFVLLLDDIWERIDLKEL----------VSLFLTTRSVDVCDQMDA--EKLEVYSLAN 146 (693)
Q Consensus 81 --~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~~~----------~~iliTtr~~~~~~~~~~--~~~~l~~l~~ 146 (693)
....+..+....+++.++++++|+||||||+...|+.+ ++||||||+..++..... ..+++++|+.
T Consensus 80 ~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 80 SISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp TSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred ccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 12334567788899999999999999999999888555 899999999998877663 4499999999
Q ss_pred hHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhcCCChhHHHHHHHHHhhhhcccCCCcHHHHHH
Q 042597 147 DEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRAMKSQTKVGDWQRAIKKMRISASKFTGMDEKVFSR 226 (693)
Q Consensus 147 ~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~ 226 (693)
+||+++|.+.++...........+.+++|+++|+|+|+|++++|++++.+.+.++|+++++.+........+....+..+
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~ 239 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSA 239 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999998765533345567889999999999999999999999776678899999998887765544456799999
Q ss_pred HHHhhcCCCchhhhhHHhhhcccCCCCccChHHHHHHHHhcCccCCc
Q 042597 227 LKFSYDSLSTDELRSCLLYCCLYPKDYEIPRRELIDYWISEGFVDDF 273 (693)
Q Consensus 227 l~~s~~~L~~~~~k~~~l~~~~f~~~~~i~~~~li~~w~~~g~~~~~ 273 (693)
+.+||+.|++ ++|.||++||+||+++.|+++.++++|+++|++...
T Consensus 240 l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 240 LELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 9999999999 999999999999999999999999999999998753
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=1.9e-21 Score=197.41 Aligned_cols=330 Identities=18% Similarity=0.250 Sum_probs=213.0
Q ss_pred eeeecCCCccCCc-ccccccccceeeeccccchhhc-cCCCCCccceeeccccccc--cccccccCCCCcccEEEccCCc
Q 042597 321 FLVRAGIKLTEAP-KVQEWEGAKRVSLMDNRILRLL-EIPTCSRLITLLLYENWIE--EITDGFFQPMSSLRVLALGRNF 396 (693)
Q Consensus 321 ~~~~~~~~~~~~~-~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~l~--~~~~~~~~~l~~L~~L~L~~~~ 396 (693)
++..+......+| .+..+.++.+|++..|++..+. .++.++.||++.+..|++. ++|++ +-.++.|.+||||.|
T Consensus 36 WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShN- 113 (1255)
T KOG0444|consen 36 WLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHN- 113 (1255)
T ss_pred EEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecchh-
Confidence 3334444444554 3445778889999999988876 5888999999999988664 67777 566899999999999
Q ss_pred chhhchHhhhccccccEEeeCCCCCCccChh-hhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccc
Q 042597 397 FLSKLRSGIANLVSLHHLDLSSTNITGLPQD-LKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEE 475 (693)
Q Consensus 397 ~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~ 475 (693)
.+.+.|..+..-+++-.|+||+|+|.++|.. +-+++-|-+||+++| .+..+|+. +..+.+|++|.+++|....
T Consensus 114 qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ-~RRL~~LqtL~Ls~NPL~h---- 187 (1255)
T KOG0444|consen 114 QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ-IRRLSMLQTLKLSNNPLNH---- 187 (1255)
T ss_pred hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHH-HHHHhhhhhhhcCCChhhH----
Confidence 8899999999999999999999999999876 568899999999998 88999988 6889999999999886543
Q ss_pred cCcccccCcchhHHhhccCCCCceeEEEeechhh------Hhhhhccchh----------hhhhcc-cccceeEeccccc
Q 042597 476 EGNVLCDDAEPLMKELLGLKHLNVLSWSFRSSLA------VQKFFKYPKL----------ELELEN-TNLEEMKIDSTEE 538 (693)
Q Consensus 476 ~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~------~~~~~~~~~l----------~~~l~~-~~L~~L~i~~~~~ 538 (693)
..+..++++++|..+.++...... +..+.++..+ ..-+-. .+|..|++++...
T Consensus 188 ----------fQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 188 ----------FQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred ----------HHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce
Confidence 345566666666666665443211 1111111000 000011 2333444443332
Q ss_pred ccc-ccccccCCccEEEEeccccccch-hhhhcCCccEEEEecccc-chhhhcc-ccc---------ccccccccccCCc
Q 042597 539 VKK-RFRSGFRSLNTVRVNGCKVKDLT-WLVFVQNLKELEISFCHA-VEDIIIV-DKL---------RDISEIIGLEHNF 605 (693)
Q Consensus 539 ~~~-~~~~~~~~L~~L~l~~~~l~~~~-~l~~l~~L~~L~l~~~~~-~~~~~~~-~~~---------~~~~~~~~~~~~~ 605 (693)
... .....-.+|+.|+++.|+++.+| .+..++.|+.|.+.+|.. .+.+|.. +.+ .+.-++.+...-.
T Consensus 258 teL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcR 337 (1255)
T KOG0444|consen 258 TELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCR 337 (1255)
T ss_pred eeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhh
Confidence 211 11223345555666666555544 345566666666655542 1222221 111 1112333344556
Q ss_pred CCCcceeeccccccccccccCCCCCCCccEEEEccCCCCCCcCCCCCCCCCcceEEechHHHHhh
Q 042597 606 FAQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVLHCPELKKLPLNSSSPKERRVVIEGRKEWWEE 670 (693)
Q Consensus 606 ~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~~~~l~~~~~~~~~~~~ 670 (693)
|++|+.|.+. |..+-.+|..+.-+|.|+.|++++.|+|..-|. +...+..+.+.+.+--...+
T Consensus 338 C~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK-P~da~~~lefYNIDFSLq~Q 400 (1255)
T KOG0444|consen 338 CVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK-PNDARKKLEFYNIDFSLQHQ 400 (1255)
T ss_pred hHHHHHhccc-ccceeechhhhhhcCCcceeeccCCcCccCCCC-cchhhhcceeeecceehhhH
Confidence 7888888885 557888898899999999999999999986554 33334566666554433333
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.80 E-value=2.3e-19 Score=212.94 Aligned_cols=131 Identities=26% Similarity=0.373 Sum_probs=64.2
Q ss_pred ccccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeC
Q 042597 338 WEGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLS 417 (693)
Q Consensus 338 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~ 417 (693)
+.+++.|++.+|.+.+......+++|++|++++|.+....+..++.+++|++|++++|.....+|..++++++|++|+++
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 196 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA 196 (968)
T ss_pred CCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence 34455555555544433223344455555555555444333334555555555555553334455555555555555555
Q ss_pred CCCCCc-cChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCC
Q 042597 418 STNITG-LPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGS 469 (693)
Q Consensus 418 ~~~i~~-lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~ 469 (693)
+|.++. +|..++++++|++|++++|.....+|.. ++++++|++|++.+|..
T Consensus 197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNL 248 (968)
T ss_pred CCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCcee
Confidence 555443 4555555555555555555333344443 34555555555555543
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.79 E-value=5.7e-19 Score=209.51 Aligned_cols=291 Identities=18% Similarity=0.159 Sum_probs=196.1
Q ss_pred ccccccceeeeccccchh-hc-cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccE
Q 042597 336 QEWEGAKRVSLMDNRILR-LL-EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHH 413 (693)
Q Consensus 336 ~~~~~l~~l~l~~~~~~~-~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~ 413 (693)
..+++++.|++.+|.+.. ++ .+.++++|++|++++|.+....|..++++++|++|++++|.....+|..++++++|++
T Consensus 137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 456889999999998864 34 4788999999999999988777777899999999999999666688999999999999
Q ss_pred EeeCCCCCCc-cChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhc
Q 042597 414 LDLSSTNITG-LPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELL 492 (693)
Q Consensus 414 L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 492 (693)
|++++|+++. +|..++++++|++|++++|.....+|.. ++++++|++|++.+|.+... .+. .+.
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~-----------~p~---~l~ 281 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGP-----------IPP---SIF 281 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeecc-----------Cch---hHh
Confidence 9999998885 8888999999999999999655677776 68999999999998876543 222 334
Q ss_pred cCCCCceeEEEeechhhHhhhhccchhhhhhcc-cccceeEeccccccc--cccccccCCccEEEEecccccc-c-hhhh
Q 042597 493 GLKHLNVLSWSFRSSLAVQKFFKYPKLELELEN-TNLEEMKIDSTEEVK--KRFRSGFRSLNTVRVNGCKVKD-L-TWLV 567 (693)
Q Consensus 493 ~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~L~~L~i~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~-~-~~l~ 567 (693)
++++|+.++++.+..... .+ ..+.. ++|+.|++.++.... +.....+++|+.|++++|.++. + ..++
T Consensus 282 ~l~~L~~L~Ls~n~l~~~-----~p---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 353 (968)
T PLN00113 282 SLQKLISLDLSDNSLSGE-----IP---ELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353 (968)
T ss_pred hccCcCEEECcCCeeccC-----CC---hhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh
Confidence 455566665554432110 00 01111 556666666554332 2234556677777777775543 2 2455
Q ss_pred hcCCccEEEEeccccchhhhccc-ccccc----------cccccccCCcCCCcceeeccccccccccccCCCCCCCccEE
Q 042597 568 FVQNLKELEISFCHAVEDIIIVD-KLRDI----------SEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKKI 636 (693)
Q Consensus 568 ~l~~L~~L~l~~~~~~~~~~~~~-~~~~~----------~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L 636 (693)
.+++|+.|++++|.....++... ....+ .+..+...+.+++|+.|++.+|.-...++.....+++|+.|
T Consensus 354 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 433 (968)
T PLN00113 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL 433 (968)
T ss_pred CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEE
Confidence 66677777777665443332110 00000 00000134567788888888775445666667788888888
Q ss_pred EEccCCCCCCcCC
Q 042597 637 QVLHCPELKKLPL 649 (693)
Q Consensus 637 ~l~~c~~L~~lp~ 649 (693)
++++|.--..+|.
T Consensus 434 ~Ls~N~l~~~~~~ 446 (968)
T PLN00113 434 DISNNNLQGRINS 446 (968)
T ss_pred ECcCCcccCccCh
Confidence 8887653333443
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=4.2e-20 Score=186.68 Aligned_cols=281 Identities=22% Similarity=0.260 Sum_probs=155.2
Q ss_pred ccccccceeeeccccchhhccCCCCC-ccceeeccccccccccccccCCCCcccEEEccCCcchhhchH-hhhccccccE
Q 042597 336 QEWEGAKRVSLMDNRILRLLEIPTCS-RLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRS-GIANLVSLHH 413 (693)
Q Consensus 336 ~~~~~l~~l~l~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~-~~~~l~~L~~ 413 (693)
..+++++.+++..|.+..+|.+.... +|+.|+|.+|.|+.+..+.+..++.||+||||.| .+.++|. +|..-.++++
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKK 177 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceE
Confidence 44566667777777777776655443 4777777777666666666666677777777777 5555542 3445566777
Q ss_pred EeeCCCCCCccCh-hhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhh-
Q 042597 414 LDLSSTNITGLPQ-DLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKEL- 491 (693)
Q Consensus 414 L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l- 491 (693)
|+|++|.|+.+.. .+.++.+|..|.+++| .++.+|...|.+|++|+.|++..|.+... ..-.+..+
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~iriv-----------e~ltFqgL~ 245 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNRIRIV-----------EGLTFQGLP 245 (873)
T ss_pred EeeccccccccccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccceeee-----------hhhhhcCch
Confidence 7777777766533 3666666777777766 66666666566677777777666654322 01111222
Q ss_pred --------------------ccCCCCceeEEEeechh--hHhhhhccchhhhhhcccccceeEeccccccc--ccccccc
Q 042597 492 --------------------LGLKHLNVLSWSFRSSL--AVQKFFKYPKLELELENTNLEEMKIDSTEEVK--KRFRSGF 547 (693)
Q Consensus 492 --------------------~~L~~L~~l~~~~~~~~--~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~--~~~~~~~ 547 (693)
..+.+++.+++..+... .-..+..+ +.|+.|+++...... ...++.+
T Consensus 246 Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgL---------t~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 246 SLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGL---------TSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccccccc---------chhhhhccchhhhheeecchhhhc
Confidence 22223333333322211 11112222 334444444333222 2233556
Q ss_pred CCccEEEEeccccccchh--h------------------------hhcCCccEEEEeccccchhhhcccccccccccccc
Q 042597 548 RSLNTVRVNGCKVKDLTW--L------------------------VFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGL 601 (693)
Q Consensus 548 ~~L~~L~l~~~~l~~~~~--l------------------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 601 (693)
+.|++|++++|+++.++. + ..+++|++|+|+.|...-.+. + ...
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE---------D-aa~ 386 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE---------D-AAV 386 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe---------c-chh
Confidence 666666666666665542 1 224555555555553211110 0 002
Q ss_pred cCCcCCCcceeeccccccccccccC-CCCCCCccEEEEccCCCCCCcCCC
Q 042597 602 EHNFFAQLEYLRILYGRNLKSIYPN-PLPFPKLKKIQVLHCPELKKLPLN 650 (693)
Q Consensus 602 ~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~L~~lp~~ 650 (693)
...++++|+.|++.+. ++++++.. +..+++||+|++-+ +.+.++...
T Consensus 387 ~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~n 434 (873)
T KOG4194|consen 387 AFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGD-NAIASIQPN 434 (873)
T ss_pred hhccchhhhheeecCc-eeeecchhhhccCcccceecCCC-Ccceeeccc
Confidence 4556888888888774 68888754 56789999999966 455555433
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.75 E-value=2.7e-19 Score=180.92 Aligned_cols=272 Identities=23% Similarity=0.260 Sum_probs=145.1
Q ss_pred cccceeeeccccchhhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhc-hHhhhccccccEEe
Q 042597 339 EGAKRVSLMDNRILRLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKL-RSGIANLVSLHHLD 415 (693)
Q Consensus 339 ~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~-p~~~~~l~~L~~L~ 415 (693)
.+++.|.+.+|++..+. .|..+.+|.+|.|+.|.++.+|...|+.+++|+.|+|.+| .+... ...|.+|.+|+.|.
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLK 251 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhh
Confidence 34555555555555443 2455555555555555555555555555555555555555 33333 22455555555555
Q ss_pred eCCCCCCccChh-hhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccC
Q 042597 416 LSSTNITGLPQD-LKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGL 494 (693)
Q Consensus 416 l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 494 (693)
|.+|.|..+-.+ +..|.++++|++..| .+..+..+.+.+|++|+.|++++|.+... .+......
T Consensus 252 lqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~NaI~ri--------------h~d~Wsft 316 (873)
T KOG4194|consen 252 LQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYNAIQRI--------------HIDSWSFT 316 (873)
T ss_pred hhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhccchhhhhee--------------ecchhhhc
Confidence 555555555443 344555555555555 44444444344555555555555544332 11122222
Q ss_pred CCCceeEEEeechhhHh--hhhccchhhhhhcccccceeEecccccc--ccccccccCCccEEEEeccccccc-----hh
Q 042597 495 KHLNVLSWSFRSSLAVQ--KFFKYPKLELELENTNLEEMKIDSTEEV--KKRFRSGFRSLNTVRVNGCKVKDL-----TW 565 (693)
Q Consensus 495 ~~L~~l~~~~~~~~~~~--~~~~~~~l~~~l~~~~L~~L~i~~~~~~--~~~~~~~~~~L~~L~l~~~~l~~~-----~~ 565 (693)
++|..|+++.+....+. .+..+ ..|++|+++..... ....+..+++|++|+++.|.+... ..
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L---------~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~ 387 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVL---------SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVA 387 (873)
T ss_pred ccceeEeccccccccCChhHHHHH---------HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhh
Confidence 33333333333211111 11111 34555555554332 233456788999999999954431 13
Q ss_pred hhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccc-cCCCCCCCccEEEEc-----
Q 042597 566 LVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIY-PNPLPFPKLKKIQVL----- 639 (693)
Q Consensus 566 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~~L~l~----- 639 (693)
...+++|+.|.+.+|+ ++.++. -...+|++|++|++.+.. +.++- ..+.+| .|++|.+.
T Consensus 388 f~gl~~LrkL~l~gNq-lk~I~k------------rAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~nSssfl 452 (873)
T KOG4194|consen 388 FNGLPSLRKLRLTGNQ-LKSIPK------------RAFSGLEALEHLDLGDNA-IASIQPNAFEPM-ELKELVMNSSSFL 452 (873)
T ss_pred hccchhhhheeecCce-eeecch------------hhhccCcccceecCCCCc-ceeecccccccc-hhhhhhhcccceE
Confidence 4459999999999986 444433 366789999999997653 55543 334455 77777665
Q ss_pred -cCCCCCCcCCCC
Q 042597 640 -HCPELKKLPLNS 651 (693)
Q Consensus 640 -~c~~L~~lp~~~ 651 (693)
+| .|+.++.-.
T Consensus 453 CDC-ql~Wl~qWl 464 (873)
T KOG4194|consen 453 CDC-QLKWLAQWL 464 (873)
T ss_pred Eec-cHHHHHHHH
Confidence 33 555555433
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.72 E-value=9.7e-17 Score=190.64 Aligned_cols=289 Identities=19% Similarity=0.241 Sum_probs=200.1
Q ss_pred CccCCcccccccccceeeeccccchhhc-cCCCCCccceeeccccc-cccccccccCCCCcccEEEccCCcchhhchHhh
Q 042597 328 KLTEAPKVQEWEGAKRVSLMDNRILRLL-EIPTCSRLITLLLYENW-IEEITDGFFQPMSSLRVLALGRNFFLSKLRSGI 405 (693)
Q Consensus 328 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~ 405 (693)
....+|..-...+++.|++.++.+..++ .+..+++|+.|++++|. +..+| . ++.+++|++|+|++|..+..+|.++
T Consensus 600 ~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~-ls~l~~Le~L~L~~c~~L~~lp~si 677 (1153)
T PLN03210 600 PLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-D-LSMATNLETLKLSDCSSLVELPSSI 677 (1153)
T ss_pred CCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-c-cccCCcccEEEecCCCCccccchhh
Confidence 3444555556689999999999988875 47789999999999874 55554 3 7889999999999998889999999
Q ss_pred hccccccEEeeCCC-CCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCccc----
Q 042597 406 ANLVSLHHLDLSST-NITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVL---- 480 (693)
Q Consensus 406 ~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~---- 480 (693)
+++++|++|++++| .++.+|..+ ++++|++|++++|..+..+|.. .++|+.|++.+|.+.. +|......
T Consensus 678 ~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~-lP~~~~l~~L~~ 751 (1153)
T PLN03210 678 QYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEE-FPSNLRLENLDE 751 (1153)
T ss_pred hccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCcccc-cccccccccccc
Confidence 99999999999998 688899766 7899999999999777776642 3566666666665322 11100000
Q ss_pred ------------------------------------ccCcchhHHhhccCCCCceeEEEeechhhHhhhhccchhhhhhc
Q 042597 481 ------------------------------------CDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELE 524 (693)
Q Consensus 481 ------------------------------------~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~ 524 (693)
..........+.++++|+.+++..|.... .++ ..+.
T Consensus 752 L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~-----~LP---~~~~ 823 (1153)
T PLN03210 752 LILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLE-----TLP---TGIN 823 (1153)
T ss_pred ccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcC-----eeC---CCCC
Confidence 00001112234445555555554432110 111 0111
Q ss_pred ccccceeEeccccccccccccccCCccEEEEeccccccch-hhhhcCCccEEEEeccccchhhhcccccccccccccccC
Q 042597 525 NTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLT-WLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEH 603 (693)
Q Consensus 525 ~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (693)
.+.|+.|.+++|......+ ...++|+.|++++|.++.+| ++..+++|+.|++++|..++.++. ..
T Consensus 824 L~sL~~L~Ls~c~~L~~~p-~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~-------------~~ 889 (1153)
T PLN03210 824 LESLESLDLSGCSRLRTFP-DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL-------------NI 889 (1153)
T ss_pred ccccCEEECCCCCcccccc-ccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCc-------------cc
Confidence 2567778887775543221 23568899999999888876 577799999999999998887653 45
Q ss_pred CcCCCcceeeccccccccccccCC-------------CCCCCccEEEEccCCCCCC
Q 042597 604 NFFAQLEYLRILYGRNLKSIYPNP-------------LPFPKLKKIQVLHCPELKK 646 (693)
Q Consensus 604 ~~~~~L~~L~l~~~~~l~~l~~~~-------------~~~~~L~~L~l~~c~~L~~ 646 (693)
..+++|+.|.+.+|.++..++... ..+|+...+.+.+|.+|..
T Consensus 890 ~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 890 SKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred ccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 678899999999999887654321 2356667778889988764
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.71 E-value=3.5e-19 Score=181.16 Aligned_cols=293 Identities=20% Similarity=0.211 Sum_probs=191.0
Q ss_pred ccccccccceeeeccccchhhcc-CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchh--hchHhhhcccc
Q 042597 334 KVQEWEGAKRVSLMDNRILRLLE-IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLS--KLRSGIANLVS 410 (693)
Q Consensus 334 ~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~--~~p~~~~~l~~ 410 (693)
.+..+..++.|.+....+..+|. ++.+.+|+.|.+.+|.+..+... ++.++.||.++++.| .++ -+|..+..+..
T Consensus 27 ~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N-~LKnsGiP~diF~l~d 104 (1255)
T KOG0444|consen 27 DVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDN-NLKNSGIPTDIFRLKD 104 (1255)
T ss_pred hHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhcc-ccccCCCCchhccccc
Confidence 44567788889998888888884 88999999999999999888776 889999999999998 544 57888999999
Q ss_pred ccEEeeCCCCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHh
Q 042597 411 LHHLDLSSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKE 490 (693)
Q Consensus 411 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (693)
|..||||+|++++.|.++.+-+++-.|++++| .+..+|..++-+++.|-.|++++|..-. ....
T Consensus 105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~---------------LPPQ 168 (1255)
T KOG0444|consen 105 LTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEM---------------LPPQ 168 (1255)
T ss_pred ceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhh---------------cCHH
Confidence 99999999999999999999999999999999 8999999988999999999999887543 2334
Q ss_pred hccCCCCceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccc---cccccccCCccEEEEeccccccch-hh
Q 042597 491 LLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVK---KRFRSGFRSLNTVRVNGCKVKDLT-WL 566 (693)
Q Consensus 491 l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~---~~~~~~~~~L~~L~l~~~~l~~~~-~l 566 (693)
.+.|.+|+.+.++.+....++ +..++.+ +.|+.|++++..... +.....+.||+.++++.|++..+| .+
T Consensus 169 ~RRL~~LqtL~Ls~NPL~hfQ-LrQLPsm------tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecl 241 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLNHFQ-LRQLPSM------TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECL 241 (1255)
T ss_pred HHHHhhhhhhhcCCChhhHHH-HhcCccc------hhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHH
Confidence 455555666666655433221 2222221 344445554432211 222334445555555555444433 33
Q ss_pred hhcCCccEEEEeccccch----------------------hhhcc-ccc------------ccccccccccCCcCCCcce
Q 042597 567 VFVQNLKELEISFCHAVE----------------------DIIIV-DKL------------RDISEIIGLEHNFFAQLEY 611 (693)
Q Consensus 567 ~~l~~L~~L~l~~~~~~~----------------------~~~~~-~~~------------~~~~~~~~~~~~~~~~L~~ 611 (693)
..+++|+.|+||+|...+ .+|.. ..+ -.+..+. ...|.+..|+.
T Consensus 242 y~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiP-SGIGKL~~Lev 320 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIP-SGIGKLIQLEV 320 (1255)
T ss_pred hhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCc-cchhhhhhhHH
Confidence 344455555555443211 11110 000 0111111 12333444444
Q ss_pred eeccccccccccccCCCCCCCccEEEEccCCCCCCcCCCCCCC
Q 042597 612 LRILYGRNLKSIYPNPLPFPKLKKIQVLHCPELKKLPLNSSSP 654 (693)
Q Consensus 612 L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~~ 654 (693)
+...+ .+++-+|.++..|+.|+.|.+ +|+.|-.||.+.-.+
T Consensus 321 f~aan-N~LElVPEglcRC~kL~kL~L-~~NrLiTLPeaIHlL 361 (1255)
T KOG0444|consen 321 FHAAN-NKLELVPEGLCRCVKLQKLKL-DHNRLITLPEAIHLL 361 (1255)
T ss_pred HHhhc-cccccCchhhhhhHHHHHhcc-cccceeechhhhhhc
Confidence 44443 246666777777777777777 667777777765443
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.66 E-value=3.8e-18 Score=165.30 Aligned_cols=282 Identities=25% Similarity=0.270 Sum_probs=184.7
Q ss_pred cccccccccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhcccccc
Q 042597 333 PKVQEWEGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLH 412 (693)
Q Consensus 333 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~ 412 (693)
+....+..+..|+++.|++..+|+|+.|+.|..|++..|.++.+|....+.+.++.+|||+.| .++++|..+..+++|+
T Consensus 200 ~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~ 278 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLE 278 (565)
T ss_pred hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhh
Confidence 566678889999999999999999999999999999999999999987889999999999999 8999999999999999
Q ss_pred EEeeCCCCCCccChhhhcCCCCcEeccCCccccccccccc----------------------------------------
Q 042597 413 HLDLSSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKL---------------------------------------- 452 (693)
Q Consensus 413 ~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~---------------------------------------- 452 (693)
+||+|+|.|+.+|.+++++ .|+.|-+.||+ +..+-.++
T Consensus 279 rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~ 356 (565)
T KOG0472|consen 279 RLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFP 356 (565)
T ss_pred hhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCccc
Confidence 9999999999999999999 99999988882 22211111
Q ss_pred -ccCCCccccccccccCCCcccccc-----------CcccccCcchhHHhhccCCCCce-eEEEeechhhHhhhhccchh
Q 042597 453 -KSGFSKLEALRLLECGSGGVIEEE-----------GNVLCDDAEPLMKELLGLKHLNV-LSWSFRSSLAVQKFFKYPKL 519 (693)
Q Consensus 453 -~~~l~~L~~L~l~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~L~~L~~-l~~~~~~~~~~~~~~~~~~l 519 (693)
...+.+.+.|.+++-..+....+. .++......+....+..++.+.. +.++.+. .++
T Consensus 357 ~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~-isf--------- 426 (565)
T KOG0472|consen 357 DIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNK-ISF--------- 426 (565)
T ss_pred chhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCc-ccc---------
Confidence 122445556666555544432221 12222222233333333332221 1111110 000
Q ss_pred hhhhcccccceeEeccccccccccccccCCccEEEEeccccccch-hhhhcCCccEEEEeccccchhhhcc----ccc--
Q 042597 520 ELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLT-WLVFVQNLKELEISFCHAVEDIIIV----DKL-- 592 (693)
Q Consensus 520 ~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~----~~~-- 592 (693)
.+...+.+++|+.|++++|.+.++| .++.+..|+.|+|+.|.. ..+|.- ..+
T Consensus 427 --------------------v~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~~y~lq~lEt 485 (565)
T KOG0472|consen 427 --------------------VPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRF-RMLPECLYELQTLET 485 (565)
T ss_pred --------------------chHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccccc-ccchHHHhhHHHHHH
Confidence 0111244566666666666666555 445555666666666632 111110 000
Q ss_pred -----ccccccccccCCcCCCcceeeccccccccccccCCCCCCCccEEEEccCCCCCCcCCCC
Q 042597 593 -----RDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVLHCPELKKLPLNS 651 (693)
Q Consensus 593 -----~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~L~~lp~~~ 651 (693)
-.+.++.....+++.+|+.|++.+ ..++.+|..++.|.+|++|+++|.|= + .|.+.
T Consensus 486 llas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpf-r-~Pr~~ 546 (565)
T KOG0472|consen 486 LLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPF-R-QPRHQ 546 (565)
T ss_pred HHhccccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEecCCcc-C-CCHHH
Confidence 111222212356677888888855 46899999999999999999999753 3 55443
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=1.1e-14 Score=160.60 Aligned_cols=252 Identities=19% Similarity=0.127 Sum_probs=171.3
Q ss_pred eeeecCCCccCCcccccccccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhh
Q 042597 321 FLVRAGIKLTEAPKVQEWEGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSK 400 (693)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~ 400 (693)
.+...+..+..+|... ..+++.|.+.+|.+..+|.. .++|++|++++|.++.+|.. .++|+.|++++| .+..
T Consensus 205 ~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l----p~sL~~L~Ls~N-~L~~ 276 (788)
T PRK15387 205 VLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL----PPGLLELSIFSN-PLTH 276 (788)
T ss_pred EEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc----ccccceeeccCC-chhh
Confidence 3333444555555422 35789999999999988754 57899999999999988652 478999999999 6777
Q ss_pred chHhhhccccccEEeeCCCCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCccc
Q 042597 401 LRSGIANLVSLHHLDLSSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVL 480 (693)
Q Consensus 401 ~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 480 (693)
+|.. +.+|+.|++++|+++.+|.. +++|+.|++++| .+..+|.. ..+|+.|++.+|.+...
T Consensus 277 Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N~L~~L-------- 337 (788)
T PRK15387 277 LPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLTSL-------- 337 (788)
T ss_pred hhhc---hhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC----cccccccccccCccccc--------
Confidence 7753 35788899999999998853 578999999998 77777752 24677888887765431
Q ss_pred ccCcchhHHhhccCCCCceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEecccc
Q 042597 481 CDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKV 560 (693)
Q Consensus 481 ~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l 560 (693)
+. ++ .+|+.|+++.+....+.. . ..+|..|.+..+.....+ ..+.+|+.|++++|.+
T Consensus 338 ----P~----lp--~~Lq~LdLS~N~Ls~LP~---l--------p~~L~~L~Ls~N~L~~LP--~l~~~L~~LdLs~N~L 394 (788)
T PRK15387 338 ----PT----LP--SGLQELSVSDNQLASLPT---L--------PSELYKLWAYNNRLTSLP--ALPSGLKELIVSGNRL 394 (788)
T ss_pred ----cc----cc--cccceEecCCCccCCCCC---C--------CcccceehhhccccccCc--ccccccceEEecCCcc
Confidence 11 11 345566665543222111 1 134455555444332221 2245789999999988
Q ss_pred ccchhhhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccCCCCCCCccEEEEcc
Q 042597 561 KDLTWLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVLH 640 (693)
Q Consensus 561 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~ 640 (693)
+.+|.. .++|+.|++++|.. ..++ ..+.+|+.|++.++ +++.+|..+..+++|+.|++++
T Consensus 395 t~LP~l--~s~L~~LdLS~N~L-ssIP----------------~l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~ 454 (788)
T PRK15387 395 TSLPVL--PSELKELMVSGNRL-TSLP----------------MLPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEG 454 (788)
T ss_pred cCCCCc--ccCCCEEEccCCcC-CCCC----------------cchhhhhhhhhccC-cccccChHHhhccCCCeEECCC
Confidence 877754 36899999999863 3232 12346788888764 5778888788889999999987
Q ss_pred CC
Q 042597 641 CP 642 (693)
Q Consensus 641 c~ 642 (693)
++
T Consensus 455 N~ 456 (788)
T PRK15387 455 NP 456 (788)
T ss_pred CC
Confidence 64
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.53 E-value=7.8e-17 Score=156.34 Aligned_cols=249 Identities=22% Similarity=0.279 Sum_probs=163.0
Q ss_pred cceeeeccccchhhc-cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCC
Q 042597 341 AKRVSLMDNRILRLL-EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSST 419 (693)
Q Consensus 341 l~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~ 419 (693)
+..+.+.+|.+..+. ++.++..|.+|.+.+|.+...|+. ++.+..++.++.+.| .+.++|+.++.+.+|..|++++|
T Consensus 47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~a-ig~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAA-IGELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHH-HHHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhcccc
Confidence 455666777666653 577777788888888877777776 677777788888877 67777777888888888888888
Q ss_pred CCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCce
Q 042597 420 NITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNV 499 (693)
Q Consensus 420 ~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~ 499 (693)
.+.++|++++.+..|..|+..+| .+..+|.+ ++.+.+|..|.+.+|..... ....-+++.|..
T Consensus 125 ~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~-~~~~~~l~~l~~~~n~l~~l---------------~~~~i~m~~L~~ 187 (565)
T KOG0472|consen 125 ELKELPDSIGRLLDLEDLDATNN-QISSLPED-MVNLSKLSKLDLEGNKLKAL---------------PENHIAMKRLKH 187 (565)
T ss_pred ceeecCchHHHHhhhhhhhcccc-ccccCchH-HHHHHHHHHhhccccchhhC---------------CHHHHHHHHHHh
Confidence 88888778888888888777777 66777776 56777777777777765442 111222344443
Q ss_pred eEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccchhhhhcCCccEEEEec
Q 042597 500 LSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLTWLVFVQNLKELEISF 579 (693)
Q Consensus 500 l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~ 579 (693)
+++..+ .|+++ ++-.+.+.+|..|++..|++..+|.++.|..|++|+++.
T Consensus 188 ld~~~N---------------------~L~tl---------P~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~ 237 (565)
T KOG0472|consen 188 LDCNSN---------------------LLETL---------PPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGE 237 (565)
T ss_pred cccchh---------------------hhhcC---------ChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcc
Confidence 433211 11111 122355666777777777777777777777777777776
Q ss_pred cccchhhhcccccccccccccccCCcCCCcceeeccccccccccccCCCCCCCccEEEEccCCCCCCcCCCCCC
Q 042597 580 CHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVLHCPELKKLPLNSSS 653 (693)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~L~~lp~~~~~ 653 (693)
|. ++-++. .....+++|..|++.+. .++++|.++..+.+|++|++++ ..+..+|-....
T Consensus 238 N~-i~~lpa------------e~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgn 296 (565)
T KOG0472|consen 238 NQ-IEMLPA------------EHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGN 296 (565)
T ss_pred cH-HHhhHH------------HHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccC-CccccCCccccc
Confidence 64 233322 24456677777777663 5777777777777777777766 456666654443
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.49 E-value=1.1e-15 Score=131.22 Aligned_cols=157 Identities=25% Similarity=0.384 Sum_probs=116.7
Q ss_pred ccCCcccccccccceeeeccccchhhc-cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhc
Q 042597 329 LTEAPKVQEWEGAKRVSLMDNRILRLL-EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIAN 407 (693)
Q Consensus 329 ~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~ 407 (693)
+.+++..-.++++++|.++.|.+..++ .+..+.+|++|++++|.++++|.. ++.+++|+.|++.-| .+..+|.+|+.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmn-rl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMN-RLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchh-hhhcCccccCC
Confidence 344556666777888888888887775 578888888888888888888777 788888888888877 77778888888
Q ss_pred cccccEEeeCCCCCCc--cChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcc
Q 042597 408 LVSLHHLDLSSTNITG--LPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAE 485 (693)
Q Consensus 408 l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 485 (693)
++-|+.||+.+|++.+ +|..+..|+.|+.|++++| ..+-+|++ ++++++|+.|.+.+|.... .+
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll~------------lp 166 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLLS------------LP 166 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchhh------------Cc
Confidence 8888888888887766 7877888888888888887 56777777 6788888888887776544 34
Q ss_pred hhHHhhccCCCCceeE
Q 042597 486 PLMKELLGLKHLNVLS 501 (693)
Q Consensus 486 ~~~~~l~~L~~L~~l~ 501 (693)
..++.+.+|+.|.+-+
T Consensus 167 keig~lt~lrelhiqg 182 (264)
T KOG0617|consen 167 KEIGDLTRLRELHIQG 182 (264)
T ss_pred HHHHHHHHHHHHhccc
Confidence 4455555555444433
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.49 E-value=9.6e-14 Score=154.33 Aligned_cols=119 Identities=24% Similarity=0.336 Sum_probs=69.2
Q ss_pred cccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCC
Q 042597 339 EGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSS 418 (693)
Q Consensus 339 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~ 418 (693)
++++.|++.+|.+..++... ..+|++|++++|.++.+|... ..+|+.|+|++| .+..+|..+. .+|++|++++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 199 EQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATL---PDTIQEMELSIN-RITELPERLP--SALQSLDLFH 271 (754)
T ss_pred cCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhh---hccccEEECcCC-ccCcCChhHh--CCCCEEECcC
Confidence 45666666666666655311 246666666666666655432 235666666666 4556665543 3566666666
Q ss_pred CCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCC
Q 042597 419 TNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSG 470 (693)
Q Consensus 419 ~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~ 470 (693)
|+++.+|..+. .+|++|++++| .+..+|..+ .++|+.|++++|.+.
T Consensus 272 N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~l---p~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 272 NKISCLPENLP--EELRYLSVYDN-SIRTLPAHL---PSGITHLNVQSNSLT 317 (754)
T ss_pred CccCccccccC--CCCcEEECCCC-ccccCcccc---hhhHHHHHhcCCccc
Confidence 66666665443 46666666666 555565431 135666666665543
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.45 E-value=2.3e-14 Score=153.49 Aligned_cols=274 Identities=21% Similarity=0.271 Sum_probs=183.9
Q ss_pred ccceeeeccccchhhc-cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCC
Q 042597 340 GAKRVSLMDNRILRLL-EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSS 418 (693)
Q Consensus 340 ~l~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~ 418 (693)
+++.|++++|.+..+| .+..+.+|+.|.++.|.+...|.. .+++++|++|.|.+| .+..+|.++..+++|++|++++
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s-~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~LdlS~ 123 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSS-CSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLDLSF 123 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchh-hhhhhcchhheeccc-hhhcCchhHHhhhcccccccch
Confidence 4777888888887776 477788888888888887777754 677888888888888 7788888888888888888888
Q ss_pred CCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCc
Q 042597 419 TNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLN 498 (693)
Q Consensus 419 ~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 498 (693)
|.+..+|..+..++.+..+..++|..+..++.. . .+++++..+..... .+.+..++++
T Consensus 124 N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~-----~-ik~~~l~~n~l~~~--------------~~~~i~~l~~-- 181 (1081)
T KOG0618|consen 124 NHFGPIPLVIEVLTAEEELAASNNEKIQRLGQT-----S-IKKLDLRLNVLGGS--------------FLIDIYNLTH-- 181 (1081)
T ss_pred hccCCCchhHHhhhHHHHHhhhcchhhhhhccc-----c-chhhhhhhhhcccc--------------hhcchhhhhe--
Confidence 888888888888888888888877555444432 1 55555555544332 2333334443
Q ss_pred eeEEEeechh--hHhhhhccchhhh--------hhcccccceeEeccccccccccccccCCccEEEEeccccccch-hhh
Q 042597 499 VLSWSFRSSL--AVQKFFKYPKLEL--------ELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLT-WLV 567 (693)
Q Consensus 499 ~l~~~~~~~~--~~~~~~~~~~l~~--------~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~l~ 567 (693)
.+++..+... +...+..+..+.. .+.+++++.|....+............+|++++++.++++.+| |++
T Consensus 182 ~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~ 261 (1081)
T KOG0618|consen 182 QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIG 261 (1081)
T ss_pred eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHH
Confidence 2333333222 1111111111110 1122556666665555443333345679999999999888876 778
Q ss_pred hcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccCCCCCCCccEEEEccCCCCCCc
Q 042597 568 FVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVLHCPELKKL 647 (693)
Q Consensus 568 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~L~~l 647 (693)
.+++|+.|....|.. ..++. ......+|+.|.+.+| .++.++.....+.+|+.|++.. .+|..+
T Consensus 262 ~~~nle~l~~n~N~l-~~lp~-------------ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~-N~L~~l 325 (1081)
T KOG0618|consen 262 ACANLEALNANHNRL-VALPL-------------RISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQS-NNLPSL 325 (1081)
T ss_pred hcccceEecccchhH-HhhHH-------------HHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehh-cccccc
Confidence 899999999999875 33322 3344567888888776 5788888888889999999965 578888
Q ss_pred CCCCCC
Q 042597 648 PLNSSS 653 (693)
Q Consensus 648 p~~~~~ 653 (693)
|.....
T Consensus 326 p~~~l~ 331 (1081)
T KOG0618|consen 326 PDNFLA 331 (1081)
T ss_pred chHHHh
Confidence 775443
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.44 E-value=2.8e-15 Score=128.81 Aligned_cols=179 Identities=21% Similarity=0.245 Sum_probs=139.1
Q ss_pred cchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCCCCCccChhhh
Q 042597 350 RILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTNITGLPQDLK 429 (693)
Q Consensus 350 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~ 429 (693)
++..++.+.++++++.|.+++|+++.+||. +..+++|++|++++| .+.++|.+++++++|+.|+++-|++..+|.+++
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfg 99 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFG 99 (264)
T ss_pred cHhhcccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence 345566677888999999999999999998 889999999999999 899999999999999999999999999999999
Q ss_pred cCCCCcEeccCCcccc-cccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCceeEEEeechh
Q 042597 430 ALEKLRYLNLDHAYKL-SIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNVLSWSFRSSL 508 (693)
Q Consensus 430 ~l~~L~~L~l~~~~~l-~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~ 508 (693)
.++.|+.||+++|+.- ..+|.. |..|+.|+.|++.+|.+-. ......+|++|+++.+..+...
T Consensus 100 s~p~levldltynnl~e~~lpgn-ff~m~tlralyl~dndfe~---------------lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 100 SFPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDNDFEI---------------LPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred CCchhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCCccc---------------CChhhhhhcceeEEeeccCchh
Confidence 9999999999988433 356766 5679999999999886432 2344566777788877755433
Q ss_pred hHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccchhhhhcCCccEEEEeccc
Q 042597 509 AVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLTWLVFVQNLKELEISFCH 581 (693)
Q Consensus 509 ~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~~ 581 (693)
.+.. -.+.+..|++|.|.+|+++.+| |.|-.|++-++.
T Consensus 164 ~lpk------------------------------eig~lt~lrelhiqgnrl~vlp-----pel~~l~l~~~k 201 (264)
T KOG0617|consen 164 SLPK------------------------------EIGDLTRLRELHIQGNRLTVLP-----PELANLDLVGNK 201 (264)
T ss_pred hCcH------------------------------HHHHHHHHHHHhcccceeeecC-----hhhhhhhhhhhH
Confidence 2210 1144678889999999888766 344444444443
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=3.3e-13 Score=150.11 Aligned_cols=243 Identities=19% Similarity=0.224 Sum_probs=167.1
Q ss_pred ccceeeeccccchhhcc-CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCC
Q 042597 340 GAKRVSLMDNRILRLLE-IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSS 418 (693)
Q Consensus 340 ~l~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~ 418 (693)
+...|.+.++.+..+|. + .++|+.|++++|.++.+|... ..+|++|++++| .+..+|..+. .+|+.|++++
T Consensus 179 ~~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~l---~~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI--PEQITTLILDNNELKSLPENL---QGNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCCcCChhh---ccCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 45678888888888775 3 358999999999999988764 358999999999 7788887664 4899999999
Q ss_pred CCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCc
Q 042597 419 TNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLN 498 (693)
Q Consensus 419 ~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 498 (693)
|+++.+|..+. .+|+.|++++| .+..+|..+ ..+|+.|++++|.+... + ..+ + ++|.
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l---~~sL~~L~Ls~N~Lt~L-P-----------~~l---p--~sL~ 307 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFHN-KISCLPENL---PEELRYLSVYDNSIRTL-P-----------AHL---P--SGIT 307 (754)
T ss_pred CccCcCChhHh--CCCCEEECcCC-ccCcccccc---CCCCcEEECCCCccccC-c-----------ccc---h--hhHH
Confidence 99999998765 58999999988 778888763 25899999999876532 1 111 1 1233
Q ss_pred eeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccchhhhhcCCccEEEEe
Q 042597 499 VLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLTWLVFVQNLKELEIS 578 (693)
Q Consensus 499 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~ 578 (693)
.++++.+....+ +. . ...+|+.|.+..+.....+ ...+++|+.|++++|+++.+|. ...++|++|+|+
T Consensus 308 ~L~Ls~N~Lt~L------P~---~-l~~sL~~L~Ls~N~Lt~LP-~~l~~sL~~L~Ls~N~L~~LP~-~lp~~L~~LdLs 375 (754)
T PRK15370 308 HLNVQSNSLTAL------PE---T-LPPGLKTLEAGENALTSLP-ASLPPELQVLDVSKNQITVLPE-TLPPTITTLDVS 375 (754)
T ss_pred HHHhcCCccccC------Cc---c-ccccceeccccCCccccCC-hhhcCcccEEECCCCCCCcCCh-hhcCCcCEEECC
Confidence 333333321111 10 0 1146777777776543322 2334789999999998887764 224789999999
Q ss_pred ccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccCC----CCCCCccEEEEccCC
Q 042597 579 FCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNP----LPFPKLKKIQVLHCP 642 (693)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~----~~~~~L~~L~l~~c~ 642 (693)
+|.. ..++. ...++|+.|++.++ ++..+|..+ ..++++..|++.+.|
T Consensus 376 ~N~L-t~LP~---------------~l~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 376 RNAL-TNLPE---------------NLPAALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCcC-CCCCH---------------hHHHHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 9863 33322 12246888888875 566665433 345888889888765
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.40 E-value=8.7e-13 Score=145.80 Aligned_cols=240 Identities=19% Similarity=0.159 Sum_probs=169.9
Q ss_pred ccceeeeccccchhhcc-CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCC
Q 042597 340 GAKRVSLMDNRILRLLE-IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSS 418 (693)
Q Consensus 340 ~l~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~ 418 (693)
+-..|++.++.+..+|. +. ++|+.|++.+|.++.+|.. +++|++|++++| .+..+|.. ..+|+.|++++
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l----p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL----PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC----CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 34567888888888875 33 5899999999999988752 689999999999 77788743 46899999999
Q ss_pred CCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCc
Q 042597 419 TNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLN 498 (693)
Q Consensus 419 ~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 498 (693)
|.++.+|.. +.+|+.|++++| .+..+|. .+++|+.|++++|.+... +.. ..+|+
T Consensus 272 N~L~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~----~p~~L~~LdLS~N~L~~L------------p~l---p~~L~--- 325 (788)
T PRK15387 272 NPLTHLPAL---PSGLCKLWIFGN-QLTSLPV----LPPGLQELSVSDNQLASL------------PAL---PSELC--- 325 (788)
T ss_pred Cchhhhhhc---hhhcCEEECcCC-ccccccc----cccccceeECCCCccccC------------CCC---ccccc---
Confidence 999988853 367889999999 7788885 357899999999876542 111 12233
Q ss_pred eeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccchhhhhcCCccEEEEe
Q 042597 499 VLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLTWLVFVQNLKELEIS 578 (693)
Q Consensus 499 ~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~ 578 (693)
.+++..+....+. .+ ..+|+.|+++++.....+. .+++|+.|++++|.++.+|.+ +++|+.|+++
T Consensus 326 ~L~Ls~N~L~~LP---~l--------p~~Lq~LdLS~N~Ls~LP~--lp~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs 390 (788)
T PRK15387 326 KLWAYNNQLTSLP---TL--------PSGLQELSVSDNQLASLPT--LPSELYKLWAYNNRLTSLPAL--PSGLKELIVS 390 (788)
T ss_pred ccccccCcccccc---cc--------ccccceEecCCCccCCCCC--CCcccceehhhccccccCccc--ccccceEEec
Confidence 3333333221111 11 1478888888765544332 356899999999988887754 4689999999
Q ss_pred ccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccCCCCCCCccEEEEccCCCCCCcCCCCC
Q 042597 579 FCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVLHCPELKKLPLNSS 652 (693)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~~c~~L~~lp~~~~ 652 (693)
+|... .++ ...++|+.|+++++ .+..+|.. +.+|+.|++++ ++|+.+|....
T Consensus 391 ~N~Lt-~LP----------------~l~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~-NqLt~LP~sl~ 442 (788)
T PRK15387 391 GNRLT-SLP----------------VLPSELKELMVSGN-RLTSLPML---PSGLLSLSVYR-NQLTRLPESLI 442 (788)
T ss_pred CCccc-CCC----------------CcccCCCEEEccCC-cCCCCCcc---hhhhhhhhhcc-CcccccChHHh
Confidence 98632 222 12468999999886 47777642 45788888877 46888886543
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.40 E-value=2.8e-14 Score=138.68 Aligned_cols=291 Identities=19% Similarity=0.143 Sum_probs=167.5
Q ss_pred cCCCccCCcccccccccceeeeccccchhhcc--CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhch
Q 042597 325 AGIKLTEAPKVQEWEGAKRVSLMDNRILRLLE--IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLR 402 (693)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p 402 (693)
.+....++|. .-.++...+.+.-|.++.+|. |..+++||.|+|++|.|+.+.++.|..++.|-.|-+.++..++.+|
T Consensus 54 r~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 54 RGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred cCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 3444555553 223566778888888888874 8888888888888888888888888888887777766644777777
Q ss_pred Hh-hhccccccEEeeCCCCCCccChh-hhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccc--cccCc
Q 042597 403 SG-IANLVSLHHLDLSSTNITGLPQD-LKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVI--EEEGN 478 (693)
Q Consensus 403 ~~-~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~ 478 (693)
.. |++|..|+-|.+.-|++..++.. +..|++|..|.+++| .+..++.+.+..+.+++++.+..|.....- +-...
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~ 211 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD 211 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCccccccccchhhh
Confidence 54 77888888888888888876544 777888888888887 777788766778888888887766522110 00000
Q ss_pred ccccCcchhHHhhccCCCCceeEEEeechhhHhhhhccchhhhhhcccccceeEecccccc--ccccccccCCccEEEEe
Q 042597 479 VLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEV--KKRFRSGFRSLNTVRVN 556 (693)
Q Consensus 479 ~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~--~~~~~~~~~~L~~L~l~ 556 (693)
.....+...+.++.....++-+........-....++..+... +.-...... +...+..+++|++|+++
T Consensus 212 -~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~--------~~~~d~~d~~cP~~cf~~L~~L~~lnls 282 (498)
T KOG4237|consen 212 -DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSR--------LSSEDFPDSICPAKCFKKLPNLRKLNLS 282 (498)
T ss_pred -HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHh--------hccccCcCCcChHHHHhhcccceEeccC
Confidence 0000000111111111111111111110010111111111100 000010110 11224678888888888
Q ss_pred ccccccch--hhhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeecccccccccc-ccCCCCCCCc
Q 042597 557 GCKVKDLT--WLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSI-YPNPLPFPKL 633 (693)
Q Consensus 557 ~~~l~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~~~~L 633 (693)
+|+++.+. ++....++++|.|..|. ++.+.. ....++..|+.|++.+. +++-+ |..+..+.+|
T Consensus 283 nN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~------------~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 283 NNKITRIEDGAFEGAAELQELYLTRNK-LEFVSS------------GMFQGLSGLKTLSLYDN-QITTVAPGAFQTLFSL 348 (498)
T ss_pred CCccchhhhhhhcchhhhhhhhcCcch-HHHHHH------------HhhhccccceeeeecCC-eeEEEeccccccccee
Confidence 88887765 55567888888888875 333211 24456677777777664 34443 3334556677
Q ss_pred cEEEEcc
Q 042597 634 KKIQVLH 640 (693)
Q Consensus 634 ~~L~l~~ 640 (693)
..|.+..
T Consensus 349 ~~l~l~~ 355 (498)
T KOG4237|consen 349 STLNLLS 355 (498)
T ss_pred eeeehcc
Confidence 7776653
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.32 E-value=2.3e-13 Score=145.87 Aligned_cols=270 Identities=21% Similarity=0.245 Sum_probs=154.0
Q ss_pred cccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCC
Q 042597 339 EGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSS 418 (693)
Q Consensus 339 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~ 418 (693)
++++.|....|.+..+..-....+|.+++++.|.++.+| ++++.+.+|+.++...| .+..+|..+...++|++|.+..
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHN-RLVALPLRISRITSLVSLSAAY 296 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHhhh
Confidence 455556666665554433444556666777777666666 56666777777777666 5566666666666666666666
Q ss_pred CCCCccChhhhcCCCCcEeccCCcccccccccccccCCCc-cccccccccCCCcccccc-------------CcccccCc
Q 042597 419 TNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSK-LEALRLLECGSGGVIEEE-------------GNVLCDDA 484 (693)
Q Consensus 419 ~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~-L~~L~l~~~~~~~~~~~~-------------~~~~~~~~ 484 (693)
|.++.+|+....++.|++|++..| .+..+|..++.-+.. |+.|+.+.+......... +|.. .
T Consensus 297 nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L---t 372 (1081)
T KOG0618|consen 297 NELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL---T 372 (1081)
T ss_pred hhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc---c
Confidence 666666666666666666666666 555555433222222 333333333222111000 0000 2
Q ss_pred chhHHhhccCCCCceeEEEeechhh--HhhhhccchhhhhhcccccceeEecccccccc-ccccccCCccEEEEeccccc
Q 042597 485 EPLMKELLGLKHLNVLSWSFRSSLA--VQKFFKYPKLELELENTNLEEMKIDSTEEVKK-RFRSGFRSLNTVRVNGCKVK 561 (693)
Q Consensus 485 ~~~~~~l~~L~~L~~l~~~~~~~~~--~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~-~~~~~~~~L~~L~l~~~~l~ 561 (693)
...+..+.+.++|++++++++.... ...+.++ ..|++|.+++...... .....+..|+.|...+|.+.
T Consensus 373 d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kl---------e~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKL---------EELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL 443 (1081)
T ss_pred ccchhhhccccceeeeeecccccccCCHHHHhch---------HHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee
Confidence 2355566777788888877763222 2222222 3455556665544332 23456778888888888888
Q ss_pred cchhhhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccccCCCCCCCccEEEEc
Q 042597 562 DLTWLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPNPLPFPKLKKIQVL 639 (693)
Q Consensus 562 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~L~~L~l~ 639 (693)
.+|.+..++.|+.+|++.|..-+-... ..-.-|+|++|++.+.+++ ......|+.++.+...
T Consensus 444 ~fPe~~~l~qL~~lDlS~N~L~~~~l~-------------~~~p~p~LkyLdlSGN~~l---~~d~~~l~~l~~l~~~ 505 (1081)
T KOG0618|consen 444 SFPELAQLPQLKVLDLSCNNLSEVTLP-------------EALPSPNLKYLDLSGNTRL---VFDHKTLKVLKSLSQM 505 (1081)
T ss_pred echhhhhcCcceEEecccchhhhhhhh-------------hhCCCcccceeeccCCccc---ccchhhhHHhhhhhhe
Confidence 888888888888888887764332211 1111178888888876642 2333445555554443
No 22
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.26 E-value=1.7e-11 Score=120.24 Aligned_cols=170 Identities=20% Similarity=0.272 Sum_probs=96.3
Q ss_pred ccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch------------
Q 042597 12 VVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK------------ 79 (693)
Q Consensus 12 ~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~------------ 79 (693)
||||++++++|.+++.. +..+.+.|+|+.|+|||+|++++.+.. +..+ ..++|+...+.....
T Consensus 1 F~gR~~el~~l~~~l~~--~~~~~~~l~G~rg~GKTsLl~~~~~~~-~~~~--~~~~y~~~~~~~~~~~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGREKELEKLKELLES--GPSQHILLYGPRGSGKTSLLKEFINEL-KEKG--YKVVYIDFLEESNESSLRSFIEETSLA 75 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHC-T--E--ECCCHHCCTTBSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh--hcCcEEEEEcCCcCCHHHHHHHHHHHh-hhcC--CcEEEEecccchhhhHHHHHHHHHHHH
Confidence 79999999999999987 557899999999999999999999986 2211 122333221100000
Q ss_pred ------hh--------------hhhchhHHHHHHHHHHc--cCcEEEEEeCccccc-ch---hhh---------------
Q 042597 80 ------KW--------------KEKSLQDKAADISSILS--RKKFVLLLDDIWERI-DL---KEL--------------- 118 (693)
Q Consensus 80 ------~~--------------~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~-~~---~~~--------------- 118 (693)
.. ...........+.+.+. ++++++|+||++... .. ..+
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 155 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQ 155 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----T
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccC
Confidence 00 00111222333334443 356999999998776 21 222
Q ss_pred -hhhhhcccchhhhhh--------c-CCceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHH
Q 042597 119 -VSLFLTTRSVDVCDQ--------M-DAEKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKT 188 (693)
Q Consensus 119 -~~iliTtr~~~~~~~--------~-~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~ 188 (693)
..+|+++........ . ....+.+++|+.+++++++...+... ... +.-....++|++.+||+|..|..
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 234444444333222 1 11229999999999999999876544 221 12367789999999999988764
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.24 E-value=1.4e-11 Score=139.44 Aligned_cols=306 Identities=22% Similarity=0.232 Sum_probs=185.1
Q ss_pred CCCccCCcccccccccceeeecccc--chhhcc--CCCCCccceeecccc-ccccccccccCCCCcccEEEccCCcchhh
Q 042597 326 GIKLTEAPKVQEWEGAKRVSLMDNR--ILRLLE--IPTCSRLITLLLYEN-WIEEITDGFFQPMSSLRVLALGRNFFLSK 400 (693)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~l~l~~~~--~~~~~~--~~~~~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~L~~~~~~~~ 400 (693)
+......+.....++++.|-+..|. +..++. |..++.|++|++++| .+.++|.. ++.+-+||||+++++ .+..
T Consensus 532 ~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~-I~~Li~LryL~L~~t-~I~~ 609 (889)
T KOG4658|consen 532 NNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSS-IGELVHLRYLDLSDT-GISH 609 (889)
T ss_pred ccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChH-HhhhhhhhcccccCC-Cccc
Confidence 3334444555555689999999986 566665 888999999999988 45566554 899999999999999 8899
Q ss_pred chHhhhccccccEEeeCCCC-CCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCcc---cccc
Q 042597 401 LRSGIANLVSLHHLDLSSTN-ITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGV---IEEE 476 (693)
Q Consensus 401 ~p~~~~~l~~L~~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~---~~~~ 476 (693)
+|.++++|+.|.+||+..+. +..+|.....|++|++|.+.... .......++.+.+|++|....+..... ....
T Consensus 610 LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~--~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~ 687 (889)
T KOG4658|consen 610 LPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA--LSNDKLLLKELENLEHLENLSITISSVLLLEDLL 687 (889)
T ss_pred cchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc--cccchhhHHhhhcccchhhheeecchhHhHhhhh
Confidence 99999999999999999984 45566556669999999987652 111111134445555554443332222 0000
Q ss_pred C---------cc--cccCcchhHHhhccCCCCceeEEEeechhhHh--hhhccchhhhhhcccccceeEecccccccc-c
Q 042597 477 G---------NV--LCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQ--KFFKYPKLELELENTNLEEMKIDSTEEVKK-R 542 (693)
Q Consensus 477 ~---------~~--~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~--~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~-~ 542 (693)
. .. ...........+..+.+|+.|.+..+...... ......... ..+++..+.+..|..... .
T Consensus 688 ~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~---~f~~l~~~~~~~~~~~r~l~ 764 (889)
T KOG4658|consen 688 GMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLL---CFPNLSKVSILNCHMLRDLT 764 (889)
T ss_pred hhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhh---hHHHHHHHHhhccccccccc
Confidence 0 00 00122334455666677777777666543211 111111000 011233333334433332 2
Q ss_pred cccccCCccEEEEecccc-cc-chhhhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccc
Q 042597 543 FRSGFRSLNTVRVNGCKV-KD-LTWLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNL 620 (693)
Q Consensus 543 ~~~~~~~L~~L~l~~~~l-~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 620 (693)
+....++|+.|.+..|.. .+ +|....+..++++.+..+. .+.... ....+.|+++..+.+.+.. +
T Consensus 765 ~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~-~~~l~~-----------~~~l~~l~~i~~~~l~~~~-l 831 (889)
T KOG4658|consen 765 WLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNK-LEGLRM-----------LCSLGGLPQLYWLPLSFLK-L 831 (889)
T ss_pred hhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccc-ccccee-----------eecCCCCceeEecccCccc-h
Confidence 335688999999999944 44 3455556666654433332 221110 0245556666666665532 5
Q ss_pred cccccCC----CCCCCccEEEEccC-CCCCCcCCCC
Q 042597 621 KSIYPNP----LPFPKLKKIQVLHC-PELKKLPLNS 651 (693)
Q Consensus 621 ~~l~~~~----~~~~~L~~L~l~~c-~~L~~lp~~~ 651 (693)
+.+.... +.+|.+..+.+.+| +++..+|.+.
T Consensus 832 ~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~ 867 (889)
T KOG4658|consen 832 EELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGE 867 (889)
T ss_pred hheehhcCcccccCccccccceeccccceeecCCcc
Confidence 5554443 67899999999997 9999999874
No 24
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.21 E-value=7.1e-10 Score=131.32 Aligned_cols=265 Identities=18% Similarity=0.261 Sum_probs=166.3
Q ss_pred CCcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchh--------
Q 042597 9 DHTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKK-------- 80 (693)
Q Consensus 9 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~-------- 80 (693)
...+|-|....+.+.+. ...+++.|+|++|.||||++..+..+. + .++|+.+.....+..
T Consensus 13 ~~~~~~R~rl~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~~----~---~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 13 LHNTVVRERLLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAGK----N---NLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred ccccCcchHHHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHhC----C---CeEEEecCcccCCHHHHHHHHHH
Confidence 36788888777666432 457899999999999999999987542 2 588998822211000
Q ss_pred ------------hh----h---hchhHHHHHHHHHHc--cCcEEEEEeCcccccc--hh-hh----------hhhhhccc
Q 042597 81 ------------WK----E---KSLQDKAADISSILS--RKKFVLLLDDIWERID--LK-EL----------VSLFLTTR 126 (693)
Q Consensus 81 ------------~~----~---~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~--~~-~~----------~~iliTtr 126 (693)
.. . .........+...+. +.++++||||++...+ .. .+ .++|||||
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR 160 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSR 160 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 00 0 011122233333332 6789999999986532 11 22 56778999
Q ss_pred chhhhh--hc--CCceEEec----cCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhcCCC
Q 042597 127 SVDVCD--QM--DAEKLEVY----SLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRAMKSQTK 198 (693)
Q Consensus 127 ~~~~~~--~~--~~~~~~l~----~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~l~~~~~ 198 (693)
...-.. .. ......+. +|+.+|+.++|....+.. --...+.+|.+.|+|.|+++..++..+.....
T Consensus 161 ~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~------~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~ 234 (903)
T PRK04841 161 NLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP------IEAAESSRLCDDVEGWATALQLIALSARQNNS 234 (903)
T ss_pred CCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC------CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCC
Confidence 843211 11 11124455 999999999998765432 12577899999999999999999887765321
Q ss_pred hhHHHHHHHHHhhhhcccCC-CcHHHHHHHHH-hhcCCCchhhhhHHhhhcccCCCCccChHHHHHHHHhcCccCCchhh
Q 042597 199 VGDWQRAIKKMRISASKFTG-MDEKVFSRLKF-SYDSLSTDELRSCLLYCCLYPKDYEIPRRELIDYWISEGFVDDFNDG 276 (693)
Q Consensus 199 ~~~~~~~l~~l~~~~~~~~~-~~~~~~~~l~~-s~~~L~~~~~k~~~l~~~~f~~~~~i~~~~li~~w~~~g~~~~~~~~ 276 (693)
. ....... ... ....+...+.- -++.||+ +.+.++...|+++ .++. .+.... . +..++
T Consensus 235 ~--~~~~~~~-------~~~~~~~~~~~~l~~~v~~~l~~-~~~~~l~~~a~~~---~~~~-~l~~~l-----~-~~~~~ 294 (903)
T PRK04841 235 S--LHDSARR-------LAGINASHLSDYLVEEVLDNVDL-ETRHFLLRCSVLR---SMND-ALIVRV-----T-GEENG 294 (903)
T ss_pred c--hhhhhHh-------hcCCCchhHHHHHHHHHHhcCCH-HHHHHHHHhcccc---cCCH-HHHHHH-----c-CCCcH
Confidence 0 0111111 111 11234454433 3789998 8999999999986 3442 222211 1 12566
Q ss_pred HHHHHHHHHccceee-c--CCCcEEechHHHHHHHHHH
Q 042597 277 CEFINDLLHACLLEE-E--GDDHVKMHDMIREMLLWIA 311 (693)
Q Consensus 277 ~~~l~~L~~~~ll~~-~--~~~~~~~hd~~~~~~~~~~ 311 (693)
...++.+.+.+++.. . +...|+.|+++++++....
T Consensus 295 ~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 295 QMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 788999999999653 2 2346889999999987654
No 25
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.16 E-value=1.7e-09 Score=110.52 Aligned_cols=244 Identities=18% Similarity=0.166 Sum_probs=136.8
Q ss_pred CcccchHHHHHHHHHHhhhc---CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhch
Q 042597 10 HTVVGQELLLYRVWRCITDQ---EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSL 86 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~---~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~ 86 (693)
..|||+++.++++..++... ......+.++|++|+|||++|+.+++.. ...+. .+...... ..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~~---~~~~~~~~--------~~ 69 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM---GVNLK---ITSGPALE--------KP 69 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCEE---Eeccchhc--------Cc
Confidence 46999999999999988742 2345678999999999999999999986 22221 11110000 00
Q ss_pred hHHHHHHHHHHccCcEEEEEeCccccc---------------------------chhhh----hhhhhcccchhhhhhc-
Q 042597 87 QDKAADISSILSRKKFVLLLDDIWERI---------------------------DLKEL----VSLFLTTRSVDVCDQM- 134 (693)
Q Consensus 87 ~~~~~~l~~~l~~~~~LlvlDdv~~~~---------------------------~~~~~----~~iliTtr~~~~~~~~- 134 (693)
......+.. + +...+++|||++... .+... .-|..||+...+....
T Consensus 70 ~~l~~~l~~-~-~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 70 GDLAAILTN-L-EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred hhHHHHHHh-c-ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHH
Confidence 111111111 1 233456666665331 11110 2233455554332221
Q ss_pred -C-CceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhcC--------CChhHHHH
Q 042597 135 -D-AEKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRAMKSQ--------TKVGDWQR 204 (693)
Q Consensus 135 -~-~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~l~~~--------~~~~~~~~ 204 (693)
+ ...+.+.+++.++..+++.+.+.......+ .+.++.|++.|+|.|..+..++..+... .+.+..+.
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~ 224 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALK 224 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHH
Confidence 1 123789999999999999988875442222 6778999999999997776555543210 11122222
Q ss_pred HHHHHhhhhcccCCCcHHHHHHHHHhhcCCCchhhhhHHh-hhcccCCCCccChHHHHHHHHhcCccCCchhhHHHHH-H
Q 042597 205 AIKKMRISASKFTGMDEKVFSRLKFSYDSLSTDELRSCLL-YCCLYPKDYEIPRRELIDYWISEGFVDDFNDGCEFIN-D 282 (693)
Q Consensus 205 ~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l-~~~~f~~~~~i~~~~li~~w~~~g~~~~~~~~~~~l~-~ 282 (693)
. ...+...|.++++ ..+..+. ..+.+..+ .+..+++... +-.....+...++ .
T Consensus 225 ~------------------l~~l~~~~~~l~~-~~~~~L~al~~~~~~~-~~~~~~ia~~-----lg~~~~~~~~~~e~~ 279 (305)
T TIGR00635 225 A------------------LEMLMIDELGLDE-IDRKLLSVLIEQFQGG-PVGLKTLAAA-----LGEDADTIEDVYEPY 279 (305)
T ss_pred H------------------HHHhCCCCCCCCH-HHHHHHHHHHHHhCCC-cccHHHHHHH-----hCCCcchHHHhhhHH
Confidence 2 2223445667776 4444444 33444333 3443332221 1122356667788 6
Q ss_pred HHHccceeecCCCcE
Q 042597 283 LLHACLLEEEGDDHV 297 (693)
Q Consensus 283 L~~~~ll~~~~~~~~ 297 (693)
|++++++.....+.+
T Consensus 280 Li~~~li~~~~~g~~ 294 (305)
T TIGR00635 280 LLQIGFLQRTPRGRI 294 (305)
T ss_pred HHHcCCcccCCchhh
Confidence 999999976544433
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.16 E-value=3e-11 Score=124.63 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=20.4
Q ss_pred cccCCccEEEEeccccccc--hhhh-h----cCCccEEEEecccc
Q 042597 545 SGFRSLNTVRVNGCKVKDL--TWLV-F----VQNLKELEISFCHA 582 (693)
Q Consensus 545 ~~~~~L~~L~l~~~~l~~~--~~l~-~----l~~L~~L~l~~~~~ 582 (693)
..+++|+.|++++|.+++. ..+. . .+.|++|++++|..
T Consensus 218 ~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 218 ASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred cccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 3456667777766655531 1111 1 25667777766643
No 27
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.14 E-value=1e-08 Score=108.86 Aligned_cols=268 Identities=16% Similarity=0.155 Sum_probs=151.9
Q ss_pred CCCcccchHHHHHHHHHHhhhc--CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch------
Q 042597 8 VDHTVVGQELLLYRVWRCITDQ--EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK------ 79 (693)
Q Consensus 8 ~~~~~vGr~~~~~~l~~~l~~~--~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~------ 79 (693)
.++.++||+++++++...+... +.....+.|+|++|+|||++++.+++.. ......-..+++++.......
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l-~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH-HHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 3467999999999999998652 3445678999999999999999999987 322222344566553221100
Q ss_pred ---------hhhhhchhHHHHHHHHHHc--cCcEEEEEeCccccc------chhhh---------hh--hhhcccchhh-
Q 042597 80 ---------KWKEKSLQDKAADISSILS--RKKFVLLLDDIWERI------DLKEL---------VS--LFLTTRSVDV- 130 (693)
Q Consensus 80 ---------~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~------~~~~~---------~~--iliTtr~~~~- 130 (693)
.....+.++....+.+.++ ++.++||||+++... .+..+ ++ +|.++.+..+
T Consensus 107 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 107 ARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchh
Confidence 0011123445556666664 456899999998753 12222 12 4555444332
Q ss_pred -------hhhcCCceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHh----CCcchHHHHHHHHHh----c
Q 042597 131 -------CDQMDAEKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLAREC----SGLPLALKTVGRAMK----S 195 (693)
Q Consensus 131 -------~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~----~G~Plal~~~~~~l~----~ 195 (693)
........+.+++++.++..+++..++.... ....-..+.++.|++++ |+.+.|+.++-.+.. .
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~-~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~ 265 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGF-YPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAERE 265 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhc-ccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence 2223334489999999999999998874321 11111244555555555 446667666644321 1
Q ss_pred ---CCChhHHHHHHHHHhhhhcccCCCcHHHHHHHHHhhcCCCchhhhhHHhhhcccCC--CCccChHHHHHHH--Hh--
Q 042597 196 ---QTKVGDWQRAIKKMRISASKFTGMDEKVFSRLKFSYDSLSTDELRSCLLYCCLYPK--DYEIPRRELIDYW--IS-- 266 (693)
Q Consensus 196 ---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l~~~~f~~--~~~i~~~~li~~w--~~-- 266 (693)
.-+.+....+.+.... ....-.+..||. +.|..+.-++.... ...+...++.... ++
T Consensus 266 ~~~~I~~~~v~~a~~~~~~-------------~~~~~~~~~L~~-~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 266 GSRKVTEEDVRKAYEKSEI-------------VHLSEVLRTLPL-HEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred CCCCcCHHHHHHHHHHHHH-------------HHHHHHHhcCCH-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 1245555555554321 223345778886 44443333332211 1234555544332 22
Q ss_pred cCccC-CchhhHHHHHHHHHccceee
Q 042597 267 EGFVD-DFNDGCEFINDLLHACLLEE 291 (693)
Q Consensus 267 ~g~~~-~~~~~~~~l~~L~~~~ll~~ 291 (693)
.|.-. .......++..|.+.|+|..
T Consensus 332 ~~~~~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 332 LGYEPRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred cCCCcCcHHHHHHHHHHHHhcCCeEE
Confidence 23211 12556778999999999986
No 28
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.13 E-value=7.9e-10 Score=113.53 Aligned_cols=239 Identities=18% Similarity=0.127 Sum_probs=138.9
Q ss_pred CcccchHHHHHHHHHHhhh---cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhch
Q 042597 10 HTVVGQELLLYRVWRCITD---QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSL 86 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~---~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~ 86 (693)
+.|||+++..+.+..++.. .......+.|+|++|+|||++|+.+++.. ...+ .++...... ..
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~---~~~~~~~~~--------~~ 90 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM---GVNI---RITSGPALE--------KP 90 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh---CCCe---EEEeccccc--------Ch
Confidence 6799999999999888864 23446788999999999999999999987 2221 111110000 00
Q ss_pred hHHHHHHHHHHccCcEEEEEeCcccccc-h-hhh-----------------------------hhhhhcccchhhhhhc-
Q 042597 87 QDKAADISSILSRKKFVLLLDDIWERID-L-KEL-----------------------------VSLFLTTRSVDVCDQM- 134 (693)
Q Consensus 87 ~~~~~~l~~~l~~~~~LlvlDdv~~~~~-~-~~~-----------------------------~~iliTtr~~~~~~~~- 134 (693)
.+... +...+ ++..+++|||++.... . +.+ .-|..|++...+....
T Consensus 91 ~~l~~-~l~~l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~ 168 (328)
T PRK00080 91 GDLAA-ILTNL-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLR 168 (328)
T ss_pred HHHHH-HHHhc-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHH
Confidence 11111 11112 2345677787765421 1 111 1234555543332221
Q ss_pred -C-CceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhcC--------CChhHHHH
Q 042597 135 -D-AEKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRAMKSQ--------TKVGDWQR 204 (693)
Q Consensus 135 -~-~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~l~~~--------~~~~~~~~ 204 (693)
+ ...+.+.+++.++..+++.+.+.......+ .+.++.|++.|+|.|..+..+...+... .+.+.-+
T Consensus 169 sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~- 244 (328)
T PRK00080 169 DRFGIVQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGVITKEIAD- 244 (328)
T ss_pred HhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHH-
Confidence 1 123889999999999999998876543333 5789999999999997666665543220 1111111
Q ss_pred HHHHHhhhhcccCCCcHHHHHHHHHhhcCCCchhhhhHHh-hhcccCCCCccChHHHHHHHHhcCccCCchhhHHHHH-H
Q 042597 205 AIKKMRISASKFTGMDEKVFSRLKFSYDSLSTDELRSCLL-YCCLYPKDYEIPRRELIDYWISEGFVDDFNDGCEFIN-D 282 (693)
Q Consensus 205 ~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l-~~~~f~~~~~i~~~~li~~w~~~g~~~~~~~~~~~l~-~ 282 (693)
.....+...+..|++ ..+..+. ....|..+ .+..+.+.... -.....+...++ .
T Consensus 245 -----------------~~l~~~~~~~~~l~~-~~~~~l~~~~~~~~~~-~~~~~~~a~~l-----g~~~~~~~~~~e~~ 300 (328)
T PRK00080 245 -----------------KALDMLGVDELGLDE-MDRKYLRTIIEKFGGG-PVGLDTLAAAL-----GEERDTIEDVYEPY 300 (328)
T ss_pred -----------------HHHHHhCCCcCCCCH-HHHHHHHHHHHHcCCC-ceeHHHHHHHH-----CCCcchHHHHhhHH
Confidence 222334455667776 4444443 55556554 34444443221 122245666677 8
Q ss_pred HHHccceeec
Q 042597 283 LLHACLLEEE 292 (693)
Q Consensus 283 L~~~~ll~~~ 292 (693)
|++.+|++..
T Consensus 301 Li~~~li~~~ 310 (328)
T PRK00080 301 LIQQGFIQRT 310 (328)
T ss_pred HHHcCCcccC
Confidence 9999999754
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.09 E-value=3.8e-11 Score=123.89 Aligned_cols=239 Identities=19% Similarity=0.119 Sum_probs=133.1
Q ss_pred CCCCCccceeeccccccccc----cccccCCCCcccEEEccCCcch------hhchHhhhccccccEEeeCCCCCCc-cC
Q 042597 357 IPTCSRLITLLLYENWIEEI----TDGFFQPMSSLRVLALGRNFFL------SKLRSGIANLVSLHHLDLSSTNITG-LP 425 (693)
Q Consensus 357 ~~~~~~L~~L~l~~~~l~~~----~~~~~~~l~~L~~L~L~~~~~~------~~~p~~~~~l~~L~~L~l~~~~i~~-lp 425 (693)
+..+.+|+.|++.+|.++.. .+..+...+.|+.|+++++... ..++..+..+++|+.|++++|.+.. .+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 34455677888877766432 1222455666777777776222 2234456667778888887777664 44
Q ss_pred hhhhcCCC---CcEeccCCcccccc-----cccccccCC-CccccccccccCCCccccccCcccccCcchhHHhhccCCC
Q 042597 426 QDLKALEK---LRYLNLDHAYKLSI-----IPHKLKSGF-SKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKH 496 (693)
Q Consensus 426 ~~~~~l~~---L~~L~l~~~~~l~~-----~p~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 496 (693)
..+..+.+ |++|++++|. +.. +... +..+ ++|+.|++.+|.+... ........+..+++
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~----------~~~~~~~~~~~~~~ 166 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGA----------SCEALAKALRANRD 166 (319)
T ss_pred HHHHHHhccCcccEEEeeCCc-cchHHHHHHHHH-HHhCCCCceEEEcCCCcCCch----------HHHHHHHHHHhCCC
Confidence 44444444 7777777773 321 1111 2344 6777777777765431 01122334445555
Q ss_pred CceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccch------hhhhcC
Q 042597 497 LNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLT------WLVFVQ 570 (693)
Q Consensus 497 L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~------~l~~l~ 570 (693)
|+.++++.+..... .+..+ ......+++|+.|++++|.++... .+..++
T Consensus 167 L~~L~l~~n~l~~~-~~~~l------------------------~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~ 221 (319)
T cd00116 167 LKELNLANNGIGDA-GIRAL------------------------AEGLKANCNLEVLDLNNNGLTDEGASALAETLASLK 221 (319)
T ss_pred cCEEECcCCCCchH-HHHHH------------------------HHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccC
Confidence 66665554432110 00000 001133568999999999765422 344578
Q ss_pred CccEEEEeccccchhhhcccccccccccccccCCcCCCcceeecccccccc-----ccccCCCCCCCccEEEEccC
Q 042597 571 NLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLK-----SIYPNPLPFPKLKKIQVLHC 641 (693)
Q Consensus 571 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-----~l~~~~~~~~~L~~L~l~~c 641 (693)
+|++|++++|........ .+........+.|+.|++.+|. ++ .+......+++|+.|+++++
T Consensus 222 ~L~~L~ls~n~l~~~~~~--------~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAA--------ALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred CCCEEecCCCcCchHHHH--------HHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 999999999864331111 0000011135799999998874 32 23334455688999999775
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=8.6e-11 Score=106.50 Aligned_cols=118 Identities=31% Similarity=0.380 Sum_probs=33.0
Q ss_pred cccchhhccCCCCCccceeeccccccccccccccC-CCCcccEEEccCCcchhhchHhhhccccccEEeeCCCCCCccCh
Q 042597 348 DNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQ-PMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTNITGLPQ 426 (693)
Q Consensus 348 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~ 426 (693)
.+.++.++.+.++.+++.|+|.+|.++.+.. ++ .+.+|++|++++| .+..++ .+..+++|++|++++|.|+.++.
T Consensus 6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 6 ANMIEQIAQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp ------------------------------S----TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CH
T ss_pred ccccccccccccccccccccccccccccccc--hhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCcccc
Confidence 3445555566666677777777776666532 33 4667777777777 666655 56667777777777777777665
Q ss_pred hh-hcCCCCcEeccCCccccccccc-ccccCCCccccccccccCCC
Q 042597 427 DL-KALEKLRYLNLDHAYKLSIIPH-KLKSGFSKLEALRLLECGSG 470 (693)
Q Consensus 427 ~~-~~l~~L~~L~l~~~~~l~~~p~-~~~~~l~~L~~L~l~~~~~~ 470 (693)
.+ .++++|+.|++++| .+..+.. ..+..+++|+.|++.+|...
T Consensus 82 ~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp HHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred chHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCccc
Confidence 54 35677777777776 4444332 11456777777777777554
No 31
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.08 E-value=6e-12 Score=122.69 Aligned_cols=259 Identities=19% Similarity=0.184 Sum_probs=158.2
Q ss_pred CccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCC-CCCCccChh-hhcCCCCcEec
Q 042597 361 SRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSS-TNITGLPQD-LKALEKLRYLN 438 (693)
Q Consensus 361 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~-~~i~~lp~~-~~~l~~L~~L~ 438 (693)
.....+.|..|.|+.+|++.|+.+++||.||||.|.....-|..|.++..|..|-+.+ |+|+.+|++ +++|.+|+-|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4667789999999999999999999999999999944445688899999998888877 799999987 88899999999
Q ss_pred cCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCceeEEEe---echhhHhhhhc
Q 042597 439 LDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNVLSWSF---RSSLAVQKFFK 515 (693)
Q Consensus 439 l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~---~~~~~~~~~~~ 515 (693)
+.-| .+..++.+.+..|++|..|.+.+|.+... ....+..+..++.+..-.+.+ |+..+......
T Consensus 147 lNan-~i~Cir~~al~dL~~l~lLslyDn~~q~i-----------~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 147 LNAN-HINCIRQDALRDLPSLSLLSLYDNKIQSI-----------CKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred cChh-hhcchhHHHHHHhhhcchhcccchhhhhh-----------ccccccchhccchHhhhcCccccccccchhhhHHh
Confidence 9888 78888888899999999999998865443 222333444444433222221 11111110000
Q ss_pred cchhhh-hh---cccccceeEeccccccccccccccCCccEE---EEeccccc-cch--hhhhcCCccEEEEeccccchh
Q 042597 516 YPKLEL-EL---ENTNLEEMKIDSTEEVKKRFRSGFRSLNTV---RVNGCKVK-DLT--WLVFVQNLKELEISFCHAVED 585 (693)
Q Consensus 516 ~~~l~~-~l---~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L---~l~~~~l~-~~~--~l~~l~~L~~L~l~~~~~~~~ 585 (693)
...... +. .+..+..-.+... ..-...-+++.+ -.+.|... ..| .+..+|+|++|+|++|.. +.
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~-----~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i-~~ 288 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQE-----DARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI-TR 288 (498)
T ss_pred hchhhcccceecchHHHHHHHhccc-----chhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc-ch
Confidence 000000 00 0000000000000 000001112221 11223222 222 366799999999999964 32
Q ss_pred hhcccccccccccccccCCcCCCcceeeccccccccccccC-CCCCCCccEEEEccCCCCCCcCCCC
Q 042597 586 IIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYPN-PLPFPKLKKIQVLHCPELKKLPLNS 651 (693)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~~L~~L~l~~c~~L~~lp~~~ 651 (693)
+.. ....+...++.|.+... .++.+... +..+..|+.|++++ ++++.+-.+.
T Consensus 289 i~~------------~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~a 341 (498)
T KOG4237|consen 289 IED------------GAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGA 341 (498)
T ss_pred hhh------------hhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecC-CeeEEEeccc
Confidence 211 24445566777776553 45555433 45688999999988 5677665443
No 32
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.06 E-value=1.1e-08 Score=102.53 Aligned_cols=171 Identities=14% Similarity=0.196 Sum_probs=99.0
Q ss_pred HHHHHHhhh-cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch-----------hhhhhchh
Q 042597 20 YRVWRCITD-QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK-----------KWKEKSLQ 87 (693)
Q Consensus 20 ~~l~~~l~~-~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~-----------~~~~~~~~ 87 (693)
.+....+.. -..+..+++|+|++|+||||+++.+++.. .. ... ...|+......... ........
T Consensus 29 ~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l-~~-~~~-~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~ 105 (269)
T TIGR03015 29 KRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRL-DQ-ERV-VAAKLVNTRVDAEDLLRMVAADFGLETEGRDKA 105 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc-CC-CCe-EEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHH
Confidence 344444432 11345689999999999999999999886 21 111 22233221110000 00001111
Q ss_pred HHHHHHHHH-----HccCcEEEEEeCccccc--chhhh-------------hhhhhcccchhh--hhh-----c--C-Cc
Q 042597 88 DKAADISSI-----LSRKKFVLLLDDIWERI--DLKEL-------------VSLFLTTRSVDV--CDQ-----M--D-AE 137 (693)
Q Consensus 88 ~~~~~l~~~-----l~~~~~LlvlDdv~~~~--~~~~~-------------~~iliTtr~~~~--~~~-----~--~-~~ 137 (693)
.....+.+. ..++++++|+||++... .++.+ ..|++|...... ... . . ..
T Consensus 106 ~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~ 185 (269)
T TIGR03015 106 ALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIA 185 (269)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheee
Confidence 122223222 26788999999998763 23332 123444443211 000 1 1 12
Q ss_pred eEEeccCCchHHHHHHHHHhhcccCCCC-CChHHHHHHHHHHhCCcchHHHHHHHHH
Q 042597 138 KLEVYSLANDEAWKLFQEMVDRSTLGSH-TSIPELAETLARECSGLPLALKTVGRAM 193 (693)
Q Consensus 138 ~~~l~~l~~~e~~~l~~~~~~~~~~~~~-~~~~~~~~~I~~~~~G~Plal~~~~~~l 193 (693)
.+.+++++.+|..+++...+........ .-.++..+.|++.++|.|..+..++..+
T Consensus 186 ~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 186 SCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred eeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 3789999999999999887754432211 2236889999999999999999998876
No 33
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.05 E-value=1.3e-09 Score=100.57 Aligned_cols=167 Identities=22% Similarity=0.221 Sum_probs=100.0
Q ss_pred CcccchHHHHHHHHHHhhh---cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhch
Q 042597 10 HTVVGQELLLYRVWRCITD---QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSL 86 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~---~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~ 86 (693)
++|||.++.++.+.-++.. ..+....+.+|||+|+||||||.-+++.. ...|. +.... ... ..
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~---~~sg~-----~i~---k~ 89 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFK---ITSGP-----AIE---KA 89 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC---T--EE---EEECC-----C-----SC
T ss_pred HHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc---CCCeE---eccch-----hhh---hH
Confidence 7899999999887766654 23567899999999999999999999987 43332 22110 001 11
Q ss_pred hHHHHHHHHHHccCcEEEEEeCccccc--chhhh-----------------------------hhhhhcccchhhhhhcC
Q 042597 87 QDKAADISSILSRKKFVLLLDDIWERI--DLKEL-----------------------------VSLFLTTRSVDVCDQMD 135 (693)
Q Consensus 87 ~~~~~~l~~~l~~~~~LlvlDdv~~~~--~~~~~-----------------------------~~iliTtr~~~~~~~~~ 135 (693)
.+++..+. .++ ++-++++|+++... +-+.+ .-|-.|||...+.....
T Consensus 90 ~dl~~il~-~l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLr 167 (233)
T PF05496_consen 90 GDLAAILT-NLK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLR 167 (233)
T ss_dssp HHHHHHHH-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCC
T ss_pred HHHHHHHH-hcC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHH
Confidence 22222222 233 45578889998662 22222 22446777765555444
Q ss_pred Cce---EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhc
Q 042597 136 AEK---LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRAMKS 195 (693)
Q Consensus 136 ~~~---~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~l~~ 195 (693)
... .++...+.+|-.+++.+.+..-....+ .+.+.+|++.+.|-|.-+.-+-+.+++
T Consensus 168 dRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~---~~~~~~Ia~rsrGtPRiAnrll~rvrD 227 (233)
T PF05496_consen 168 DRFGIVLRLEFYSEEELAKIVKRSARILNIEID---EDAAEEIARRSRGTPRIANRLLRRVRD 227 (233)
T ss_dssp TTSSEEEE----THHHHHHHHHHCCHCTT-EE----HHHHHHHHHCTTTSHHHHHHHHHHHCC
T ss_pred hhcceecchhcCCHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 433 579999999999999987765443222 688999999999999777666555554
No 34
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.04 E-value=6.7e-08 Score=101.55 Aligned_cols=269 Identities=15% Similarity=0.164 Sum_probs=149.4
Q ss_pred CCcccchHHHHHHHHHHhhh--cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCC---CEEEEEEEeccCCchhh--
Q 042597 9 DHTVVGQELLLYRVWRCITD--QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNF---DVVIWAAVIGFSDDKKW-- 81 (693)
Q Consensus 9 ~~~~vGr~~~~~~l~~~l~~--~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f---~~~~wv~~~~~~~~~~~-- 81 (693)
++.++||++++++|..++.. .+.....+.|+|++|+|||++++.+++...+..... -..+|+++.........
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 35799999999999999875 234456899999999999999999999762211111 23466666332211000
Q ss_pred ---------------hhhchhHHHHHHHHHHc--cCcEEEEEeCccccc--c---hhhh-------------hhhhhccc
Q 042597 82 ---------------KEKSLQDKAADISSILS--RKKFVLLLDDIWERI--D---LKEL-------------VSLFLTTR 126 (693)
Q Consensus 82 ---------------~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~--~---~~~~-------------~~iliTtr 126 (693)
...+..+....+.+.+. ++++++|||+++... . +..+ ..+|.++.
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 00112333444555553 567899999998772 1 1121 12333333
Q ss_pred chhh--------hhhcCCceEEeccCCchHHHHHHHHHhhcc--cCCCCCChHHHHHHHHHHhCCcchHHHHHHH-HH--
Q 042597 127 SVDV--------CDQMDAEKLEVYSLANDEAWKLFQEMVDRS--TLGSHTSIPELAETLARECSGLPLALKTVGR-AM-- 193 (693)
Q Consensus 127 ~~~~--------~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~--~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~-~l-- 193 (693)
.... ...+....+.+++++.+|..+++.+++... ....+++..+.+.+++..+.|.|..+..+.. +.
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 2221 122223348999999999999999887521 1112223334556677777788855433332 21
Q ss_pred --hc---CCChhHHHHHHHHHhhhhcccCCCcHHHHHHHHHhhcCCCchhhhhHHhhhccc--CCCCccChHHHHHHHH-
Q 042597 194 --KS---QTKVGDWQRAIKKMRISASKFTGMDEKVFSRLKFSYDSLSTDELRSCLLYCCLY--PKDYEIPRRELIDYWI- 265 (693)
Q Consensus 194 --~~---~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~k~~~l~~~~f--~~~~~i~~~~li~~w~- 265 (693)
.. .-+.+..+.+.+.+.. ....-....||. +.+..+..++.. ..+..+...++...+-
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~~-------------~~~~~~i~~l~~-~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~ 319 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIEK-------------DRLLELIRGLPT-HSKLVLLAIANLAANDEDPFRTGEVYEVYKE 319 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHcCCH-HHHHHHHHHHHHHhcCCCCccHHHHHHHHHH
Confidence 11 1234444444443321 222345667876 555444433321 1333455565555332
Q ss_pred -hc--CccC-CchhhHHHHHHHHHccceee
Q 042597 266 -SE--GFVD-DFNDGCEFINDLLHACLLEE 291 (693)
Q Consensus 266 -~~--g~~~-~~~~~~~~l~~L~~~~ll~~ 291 (693)
++ |... .......++..|...|++..
T Consensus 320 ~~~~~~~~~~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 320 VCEDIGVDPLTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHhcCCeEE
Confidence 12 2111 11566678899999999886
No 35
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.01 E-value=2.2e-08 Score=114.27 Aligned_cols=284 Identities=14% Similarity=0.199 Sum_probs=171.1
Q ss_pred cccchHHHHHHHHHHhhh-cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE-----------------
Q 042597 11 TVVGQELLLYRVWRCITD-QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV----------------- 72 (693)
Q Consensus 11 ~~vGr~~~~~~l~~~l~~-~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~----------------- 72 (693)
.++||+.+++.|...+.. ......|+.|.|.+|||||+++++|.....+.++.|-.-.+-..
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 379999999999999986 34566899999999999999999999988333222111011001
Q ss_pred ecc-------------------CCchh-------------------------hhhhchh-HHHHHHHHHH-ccCcEEEEE
Q 042597 73 IGF-------------------SDDKK-------------------------WKEKSLQ-DKAADISSIL-SRKKFVLLL 106 (693)
Q Consensus 73 ~~~-------------------~~~~~-------------------------~~~~~~~-~~~~~l~~~l-~~~~~Llvl 106 (693)
.+. ..... ..+.... .....+.-.. +.++.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 000 00000 0000000 0111222223 456999999
Q ss_pred eCcccc--cchhhh------h--------hhh--hcccch-hhhhhc--CCceEEeccCCchHHHHHHHHHhhcccCCCC
Q 042597 107 DDIWER--IDLKEL------V--------SLF--LTTRSV-DVCDQM--DAEKLEVYSLANDEAWKLFQEMVDRSTLGSH 165 (693)
Q Consensus 107 Ddv~~~--~~~~~~------~--------~il--iTtr~~-~~~~~~--~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~ 165 (693)
||++-. ..++-+ . .+. .|.+.. ...... ....+.+.||+..+...++........
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~---- 236 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK---- 236 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc----
Confidence 999633 222222 2 111 222222 111112 223399999999999999988776533
Q ss_pred CChHHHHHHHHHHhCCcchHHHHHHHHHhcC------CChhHHHHHHHHHhhhhcccCCCcHHHHHHHHHhhcCCCchhh
Q 042597 166 TSIPELAETLARECSGLPLALKTVGRAMKSQ------TKVGDWQRAIKKMRISASKFTGMDEKVFSRLKFSYDSLSTDEL 239 (693)
Q Consensus 166 ~~~~~~~~~I~~~~~G~Plal~~~~~~l~~~------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~ 239 (693)
.......+.|++++.|+|+.+..+-..+... .+...|..-...+ ......+ .+.+.+....+.||. ..
T Consensus 237 ~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i----~~~~~~~-~vv~~l~~rl~kL~~-~t 310 (849)
T COG3899 237 LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL----GILATTD-AVVEFLAARLQKLPG-TT 310 (849)
T ss_pred cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc----CCchhhH-HHHHHHHHHHhcCCH-HH
Confidence 2336889999999999999999999988763 3444554432221 1222233 466778889999998 89
Q ss_pred hhHHhhhcccCCCCccChHHHHHHHHhcCccCCchhhHHHHHHHHHccceeec-------CCC---cEEechHHHHHHHH
Q 042597 240 RSCLLYCCLYPKDYEIPRRELIDYWISEGFVDDFNDGCEFINDLLHACLLEEE-------GDD---HVKMHDMIREMLLW 309 (693)
Q Consensus 240 k~~~l~~~~f~~~~~i~~~~li~~w~~~g~~~~~~~~~~~l~~L~~~~ll~~~-------~~~---~~~~hd~~~~~~~~ 309 (693)
+..+...|++... |+...+...+.... ...+...++.|....++..+ ... +-..|+++++.+..
T Consensus 311 ~~Vl~~AA~iG~~--F~l~~La~l~~~~~----~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~ 384 (849)
T COG3899 311 REVLKAAACIGNR--FDLDTLAALAEDSP----ALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYN 384 (849)
T ss_pred HHHHHHHHHhCcc--CCHHHHHHHHhhch----HHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhc
Confidence 9999999999765 55555555554321 13455555555555555321 111 22579999888764
Q ss_pred H
Q 042597 310 I 310 (693)
Q Consensus 310 ~ 310 (693)
.
T Consensus 385 ~ 385 (849)
T COG3899 385 L 385 (849)
T ss_pred c
Confidence 3
No 36
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.00 E-value=2.3e-08 Score=99.04 Aligned_cols=213 Identities=19% Similarity=0.174 Sum_probs=126.9
Q ss_pred CcccchHHHHH---HHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhch
Q 042597 10 HTVVGQELLLY---RVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSL 86 (693)
Q Consensus 10 ~~~vGr~~~~~---~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~ 86 (693)
+++||.+..+. -|...+.+ +.+..+.+|||+|+||||||+.++... ...|.. +.. ......+.
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~--~~l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~-----~sA----v~~gvkdl 89 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEA--GHLHSMILWGPPGTGKTTLARLIAGTT---NAAFEA-----LSA----VTSGVKDL 89 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhc--CCCceeEEECCCCCCHHHHHHHHHHhh---CCceEE-----ecc----ccccHHHH
Confidence 56778777662 34445544 678899999999999999999999876 444422 111 12222333
Q ss_pred hHHHHHH-HHHHccCcEEEEEeCcccc--cchhhh------hhhh---hcccchhhh----hhcCCceEEeccCCchHHH
Q 042597 87 QDKAADI-SSILSRKKFVLLLDDIWER--IDLKEL------VSLF---LTTRSVDVC----DQMDAEKLEVYSLANDEAW 150 (693)
Q Consensus 87 ~~~~~~l-~~~l~~~~~LlvlDdv~~~--~~~~~~------~~il---iTtr~~~~~----~~~~~~~~~l~~l~~~e~~ 150 (693)
.+.++.- +....+++.++++|+|+.. .+-+.+ +.|+ .||.++... -..+...+.+++|+.++..
T Consensus 90 r~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~ 169 (436)
T COG2256 90 REIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIK 169 (436)
T ss_pred HHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHH
Confidence 3334333 2333589999999999855 344444 3333 577776531 1223334999999999999
Q ss_pred HHHHHHhhcccCCCC---CC-hHHHHHHHHHHhCCcchHHHHHHHHHhcC---C---ChhHHHHHHHHHhhhhcccCCCc
Q 042597 151 KLFQEMVDRSTLGSH---TS-IPELAETLARECSGLPLALKTVGRAMKSQ---T---KVGDWQRAIKKMRISASKFTGMD 220 (693)
Q Consensus 151 ~l~~~~~~~~~~~~~---~~-~~~~~~~I~~~~~G~Plal~~~~~~l~~~---~---~~~~~~~~l~~l~~~~~~~~~~~ 220 (693)
+++.+.+........ .. -+++.+.+++.++|--.++-......... . ..+..++.+.+-.....+..+..
T Consensus 170 ~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~h 249 (436)
T COG2256 170 KLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAH 249 (436)
T ss_pred HHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchH
Confidence 999995433221111 11 24578899999999775554444333221 1 23344444433222111211222
Q ss_pred HHHHHHHHHhhcCCCc
Q 042597 221 EKVFSRLKFSYDSLST 236 (693)
Q Consensus 221 ~~~~~~l~~s~~~L~~ 236 (693)
..+.+++..|..+-.+
T Consensus 250 YdliSA~hKSvRGSD~ 265 (436)
T COG2256 250 YDLISALHKSVRGSDP 265 (436)
T ss_pred HHHHHHHHHhhccCCc
Confidence 3777888888888776
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=5.3e-10 Score=101.38 Aligned_cols=133 Identities=24% Similarity=0.287 Sum_probs=52.9
Q ss_pred CCcccccccccceeeeccccchhhccCC-CCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhh-hcc
Q 042597 331 EAPKVQEWEGAKRVSLMDNRILRLLEIP-TCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGI-ANL 408 (693)
Q Consensus 331 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~-~~l 408 (693)
..+.......++.|++.+|.+..+..+. .+.+|++|++++|.++.+.. +..++.|++|++++| .+..++..+ ..+
T Consensus 11 ~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N-~I~~i~~~l~~~l 87 (175)
T PF14580_consen 11 QIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNN-RISSISEGLDKNL 87 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS--S--TT------TT--EEE--SS----S-CHHHHHH-
T ss_pred cccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCC-CCCccccchHHhC
Confidence 3344555567899999999999998887 58899999999999998864 788999999999999 787776555 469
Q ss_pred ccccEEeeCCCCCCccC--hhhhcCCCCcEeccCCcccccccc---cccccCCCcccccccccc
Q 042597 409 VSLHHLDLSSTNITGLP--QDLKALEKLRYLNLDHAYKLSIIP---HKLKSGFSKLEALRLLEC 467 (693)
Q Consensus 409 ~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~~~p---~~~~~~l~~L~~L~l~~~ 467 (693)
++|+.|++++|+|..+. ..+..+++|++|++.+|+.. ..+ ..++..+++|+.|+-...
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEET
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEEc
Confidence 99999999999998853 35788999999999999543 222 122456777777765433
No 38
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.93 E-value=4.4e-08 Score=105.83 Aligned_cols=267 Identities=22% Similarity=0.266 Sum_probs=174.6
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch----------
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK---------- 79 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~---------- 79 (693)
...|-|....+.+... .+.+.+.|..|+|.||||++.+.+.. ...-..+.|..+.+...+.
T Consensus 19 ~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~~----~~~~~~v~Wlslde~dndp~rF~~yLi~a 89 (894)
T COG2909 19 DNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWREL----AADGAAVAWLSLDESDNDPARFLSYLIAA 89 (894)
T ss_pred ccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHHh----cCcccceeEeecCCccCCHHHHHHHHHHH
Confidence 5677777766665553 46799999999999999999999874 3444679999982222110
Q ss_pred ----------hh-------hhhchhHHHHHHHHHHc--cCcEEEEEeCcccccc--hh-hh----------hhhhhcccc
Q 042597 80 ----------KW-------KEKSLQDKAADISSILS--RKKFVLLLDDIWERID--LK-EL----------VSLFLTTRS 127 (693)
Q Consensus 80 ----------~~-------~~~~~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~--~~-~~----------~~iliTtr~ 127 (693)
.. +..+....++.+...+. .+++.+||||.+-..+ +. .+ -..|+|||+
T Consensus 90 l~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~ 169 (894)
T COG2909 90 LQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRS 169 (894)
T ss_pred HHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEecc
Confidence 00 01122333444444443 3688999999985533 11 11 578899998
Q ss_pred hhhhhhcC--Cce--E----EeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhcCCCh
Q 042597 128 VDVCDQMD--AEK--L----EVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRAMKSQTKV 199 (693)
Q Consensus 128 ~~~~~~~~--~~~--~----~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~l~~~~~~ 199 (693)
..-....+ ... . ..-.|+.+|+.++|....+. +--+..++.+...++|=+-|+..++=.++...+.
T Consensus 170 rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l------~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~ 243 (894)
T COG2909 170 RPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL------PLDAADLKALYDRTEGWAAALQLIALALRNNTSA 243 (894)
T ss_pred CCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC------CCChHHHHHHHhhcccHHHHHHHHHHHccCCCcH
Confidence 75432211 111 2 23368999999999876432 1225678999999999999999998888843333
Q ss_pred hHHHHHHHHHhhhhcccCCCcHHHHHHH-HHhhcCCCchhhhhHHhhhcccCCCCccChHHHHHHHHhcCccCCchhhHH
Q 042597 200 GDWQRAIKKMRISASKFTGMDEKVFSRL-KFSYDSLSTDELRSCLLYCCLYPKDYEIPRRELIDYWISEGFVDDFNDGCE 278 (693)
Q Consensus 200 ~~~~~~l~~l~~~~~~~~~~~~~~~~~l-~~s~~~L~~~~~k~~~l~~~~f~~~~~i~~~~li~~w~~~g~~~~~~~~~~ 278 (693)
+.--. .+++..+.+.+.+ .--++.||+ +++.+++-+|+++.= -.+|+.....+ +++..
T Consensus 244 ~q~~~----------~LsG~~~~l~dYL~eeVld~Lp~-~l~~FLl~~svl~~f----~~eL~~~Ltg~------~ng~a 302 (894)
T COG2909 244 EQSLR----------GLSGAASHLSDYLVEEVLDRLPP-ELRDFLLQTSVLSRF----NDELCNALTGE------ENGQA 302 (894)
T ss_pred HHHhh----------hccchHHHHHHHHHHHHHhcCCH-HHHHHHHHHHhHHHh----hHHHHHHHhcC------CcHHH
Confidence 22222 1222233333333 234788999 899999999987541 12333333332 67888
Q ss_pred HHHHHHHccceee---cCCCcEEechHHHHHHHHHHh
Q 042597 279 FINDLLHACLLEE---EGDDHVKMHDMIREMLLWIAC 312 (693)
Q Consensus 279 ~l~~L~~~~ll~~---~~~~~~~~hd~~~~~~~~~~~ 312 (693)
.+++|..++++-. ++...|+.|.+..++......
T Consensus 303 mLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~ 339 (894)
T COG2909 303 MLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQ 339 (894)
T ss_pred HHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhc
Confidence 9999999999975 467899999999999875554
No 39
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.86 E-value=1.4e-07 Score=99.93 Aligned_cols=169 Identities=22% Similarity=0.252 Sum_probs=103.9
Q ss_pred CcccchHHHHHH---HHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhch
Q 042597 10 HTVVGQELLLYR---VWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSL 86 (693)
Q Consensus 10 ~~~vGr~~~~~~---l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~ 86 (693)
+.+||++..+.. +..++.. +....+.++|++|+||||+|+.+++.. ...| +.+..... .....
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~---~~~~-----~~l~a~~~----~~~~i 77 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGAT---DAPF-----EALSAVTS----GVKDL 77 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHh---CCCE-----EEEecccc----cHHHH
Confidence 679999998766 7777765 556788899999999999999999876 3322 22211111 11112
Q ss_pred hHHHHHHHHHH-ccCcEEEEEeCccccc--chhhh-------hhhh--hcccchh--hhhhcC--CceEEeccCCchHHH
Q 042597 87 QDKAADISSIL-SRKKFVLLLDDIWERI--DLKEL-------VSLF--LTTRSVD--VCDQMD--AEKLEVYSLANDEAW 150 (693)
Q Consensus 87 ~~~~~~l~~~l-~~~~~LlvlDdv~~~~--~~~~~-------~~il--iTtr~~~--~~~~~~--~~~~~l~~l~~~e~~ 150 (693)
........... .+++.+++|||++... +.+.+ ..++ .||.+.. +..... ...+.+.+++.++..
T Consensus 78 r~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~ 157 (413)
T PRK13342 78 REVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIE 157 (413)
T ss_pred HHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHH
Confidence 22222222222 4578899999998663 23333 2222 2344432 111111 133899999999999
Q ss_pred HHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHH
Q 042597 151 KLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRA 192 (693)
Q Consensus 151 ~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~ 192 (693)
+++.+.+.........-..+..+.|++.++|.+..+..+...
T Consensus 158 ~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 158 QLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999887654221110223677889999999999776555444
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=4.2e-10 Score=111.60 Aligned_cols=207 Identities=20% Similarity=0.158 Sum_probs=118.6
Q ss_pred ccccceeeeccccchhhc---cCCCCCccceeeccccccccc--cccccCCCCcccEEEccCCcchhhchHh--hhcccc
Q 042597 338 WEGAKRVSLMDNRILRLL---EIPTCSRLITLLLYENWIEEI--TDGFFQPMSSLRVLALGRNFFLSKLRSG--IANLVS 410 (693)
Q Consensus 338 ~~~l~~l~l~~~~~~~~~---~~~~~~~L~~L~l~~~~l~~~--~~~~~~~l~~L~~L~L~~~~~~~~~p~~--~~~l~~ 410 (693)
+++++.+++.+++....+ ....|++++.|+++.|-+... ...+..+|++|+.|+|+.| .+....++ -..+.+
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLSH 198 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhhh
Confidence 456777777777666554 356677888888887754432 2334567788888888877 33221111 224677
Q ss_pred ccEEeeCCCCCCc--cChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhH
Q 042597 411 LHHLDLSSTNITG--LPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLM 488 (693)
Q Consensus 411 L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 488 (693)
|+.|.+++|.+++ +-.....+++|+.|++..|..+..-... ..-+..|+.|++++|.+... ..+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~-------------~~~ 264 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDF-------------DQG 264 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccc-------------ccc
Confidence 7788888887765 4444556777888877777322111111 23466777778777765432 122
Q ss_pred HhhccCCCCceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccchhhh-
Q 042597 489 KELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLTWLV- 567 (693)
Q Consensus 489 ~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~- 567 (693)
.....|+.|+.+.++.++..++..+ ..+++ .-...++.|++|++..|++.+.+.+.
T Consensus 265 ~~~~~l~~L~~Lnls~tgi~si~~~-------------d~~s~----------~kt~~f~kL~~L~i~~N~I~~w~sl~~ 321 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTGIASIAEP-------------DVESL----------DKTHTFPKLEYLNISENNIRDWRSLNH 321 (505)
T ss_pred cccccccchhhhhccccCcchhcCC-------------Cccch----------hhhcccccceeeecccCccccccccch
Confidence 2334445555555554433222211 00000 01245788888888888776655444
Q ss_pred --hcCCccEEEEecccc
Q 042597 568 --FVQNLKELEISFCHA 582 (693)
Q Consensus 568 --~l~~L~~L~l~~~~~ 582 (693)
.++||+.|.+..++.
T Consensus 322 l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 322 LRTLENLKHLRITLNYL 338 (505)
T ss_pred hhccchhhhhhcccccc
Confidence 467778877766654
No 41
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.83 E-value=5.1e-08 Score=94.88 Aligned_cols=163 Identities=18% Similarity=0.217 Sum_probs=102.8
Q ss_pred Ccccc--hHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchh
Q 042597 10 HTVVG--QELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQ 87 (693)
Q Consensus 10 ~~~vG--r~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~ 87 (693)
+.|++ .+..++.+..++.. .....+.|+|++|+|||++|+.+++.. .......+++++..... ..
T Consensus 15 ~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~---~~~~~~~~~i~~~~~~~------~~-- 81 (226)
T TIGR03420 15 DNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAA---EERGKSAIYLPLAELAQ------AD-- 81 (226)
T ss_pred cCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHH---HhcCCcEEEEeHHHHHH------hH--
Confidence 44663 45566777777544 556899999999999999999999986 22233456665533321 00
Q ss_pred HHHHHHHHHHccCcEEEEEeCcccccc----hhhh-----------hhhhhcccchh---------hhhhcC-CceEEec
Q 042597 88 DKAADISSILSRKKFVLLLDDIWERID----LKEL-----------VSLFLTTRSVD---------VCDQMD-AEKLEVY 142 (693)
Q Consensus 88 ~~~~~l~~~l~~~~~LlvlDdv~~~~~----~~~~-----------~~iliTtr~~~---------~~~~~~-~~~~~l~ 142 (693)
..+.+.+++. -++||||++.... ...+ ..+|+|++... +...+. ...++++
T Consensus 82 ---~~~~~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~ 157 (226)
T TIGR03420 82 ---PEVLEGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLP 157 (226)
T ss_pred ---HHHHhhcccC-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecC
Confidence 1122223333 3899999986532 1122 45777776432 122332 2348999
Q ss_pred cCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHH
Q 042597 143 SLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRA 192 (693)
Q Consensus 143 ~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~ 192 (693)
+++.++...++.+.+.......+ .+..+.+++.+.|+|..+.-+...
T Consensus 158 ~l~~~e~~~~l~~~~~~~~~~~~---~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 158 PLSDEEKIAALQSRAARRGLQLP---DEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHH
Confidence 99999999998876554332222 577788888899998777665443
No 42
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.83 E-value=1.1e-07 Score=89.78 Aligned_cols=207 Identities=19% Similarity=0.198 Sum_probs=129.8
Q ss_pred CcccchHHHHHHHHHHhhh---cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhch
Q 042597 10 HTVVGQELLLYRVWRCITD---QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSL 86 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~---~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~ 86 (693)
..|||.++..+.+.=.+.+ ..+..-.|.++||+|.||||||.-+++.+ ...+. + -......+ .
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k----~----tsGp~leK---~ 91 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL---GVNLK----I----TSGPALEK---P 91 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh---cCCeE----e----cccccccC---h
Confidence 7799999999998888876 34567899999999999999999999988 22111 0 00001111 1
Q ss_pred hHHHHHHHHHHccCcEEEEEeCccccc-chhhh------------------------------hhhhhcccchhhhhhcC
Q 042597 87 QDKAADISSILSRKKFVLLLDDIWERI-DLKEL------------------------------VSLFLTTRSVDVCDQMD 135 (693)
Q Consensus 87 ~~~~~~l~~~l~~~~~LlvlDdv~~~~-~~~~~------------------------------~~iliTtr~~~~~~~~~ 135 (693)
.+++..+.. |+ ..=++++|+++... ..+++ --|=.|||.-.+.....
T Consensus 92 gDlaaiLt~-Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLr 169 (332)
T COG2255 92 GDLAAILTN-LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLR 169 (332)
T ss_pred hhHHHHHhc-CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhH
Confidence 222222222 22 33466789988652 22222 12447888755544433
Q ss_pred Cce---EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhcC--------CChhHHHH
Q 042597 136 AEK---LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRAMKSQ--------TKVGDWQR 204 (693)
Q Consensus 136 ~~~---~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~l~~~--------~~~~~~~~ 204 (693)
... .++.-.+.+|-.+++.+.+..-+...+ ++.+.+|++...|-|.-..-+.+.+++- -+.+--++
T Consensus 170 dRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~---~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~ 246 (332)
T COG2255 170 DRFGIIQRLEFYTVEELEEIVKRSAKILGIEID---EEAALEIARRSRGTPRIANRLLRRVRDFAQVKGDGDIDRDIADK 246 (332)
T ss_pred HhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCC---hHHHHHHHHhccCCcHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 322 788899999999999998865554443 6889999999999997776666655541 12333344
Q ss_pred HHHHHhhhhcccCCCcHHHHHHHHHhhcCCC
Q 042597 205 AIKKMRISASKFTGMDEKVFSRLKFSYDSLS 235 (693)
Q Consensus 205 ~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~ 235 (693)
.+..+.-...-++..+.++...+.-.|.+=|
T Consensus 247 aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgP 277 (332)
T COG2255 247 ALKMLDVDELGLDEIDRKYLRALIEQFGGGP 277 (332)
T ss_pred HHHHhCcccccccHHHHHHHHHHHHHhCCCC
Confidence 5555554444455555555665555554444
No 43
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.81 E-value=3.8e-10 Score=115.35 Aligned_cols=122 Identities=27% Similarity=0.393 Sum_probs=62.2
Q ss_pred ceeeeccccchhhc-cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCCC
Q 042597 342 KRVSLMDNRILRLL-EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTN 420 (693)
Q Consensus 342 ~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 420 (693)
...+++.|++..+| .++.|..|..+.++.|.+..++.. ++++..|.+|+|+.| .+..+|..++.|+ |+.|-+++|+
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecCc
Confidence 34444555555444 244445555555555555444443 455555555555555 4555555554443 5555555555
Q ss_pred CCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccC
Q 042597 421 ITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECG 468 (693)
Q Consensus 421 i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~ 468 (693)
++.+|..++.+..|..|+.+.| .+..+|.. ++++.+|+.|++..|.
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~ 200 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNH 200 (722)
T ss_pred cccCCcccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhh
Confidence 5555555555555555555555 44445544 3455555555555443
No 44
>PRK06893 DNA replication initiation factor; Validated
Probab=98.81 E-value=8.3e-08 Score=92.88 Aligned_cols=144 Identities=15% Similarity=0.190 Sum_probs=92.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHccCcEEEEEeCccc
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILSRKKFVLLLDDIWE 111 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~ 111 (693)
..+.+.|+|++|+|||+|++++++.. ..+...+.|+.+.... .....+.+.++ +.-++||||++.
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~---~~~~~~~~y~~~~~~~-----------~~~~~~~~~~~-~~dlLilDDi~~ 102 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHY---LLNQRTAIYIPLSKSQ-----------YFSPAVLENLE-QQDLVCLDDLQA 102 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH---HHcCCCeEEeeHHHhh-----------hhhHHHHhhcc-cCCEEEEeChhh
Confidence 34678999999999999999999986 2222344666552110 00011222222 234899999986
Q ss_pred c---cchhh-h-----------hhhhhc-ccc---------hhhhhhcCCce-EEeccCCchHHHHHHHHHhhcccCCCC
Q 042597 112 R---IDLKE-L-----------VSLFLT-TRS---------VDVCDQMDAEK-LEVYSLANDEAWKLFQEMVDRSTLGSH 165 (693)
Q Consensus 112 ~---~~~~~-~-----------~~iliT-tr~---------~~~~~~~~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~ 165 (693)
. .+|.. + +.++++ ++. +.+..++.... +++.+++.++.++++.+.+...+...+
T Consensus 103 ~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~ 182 (229)
T PRK06893 103 VIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELS 182 (229)
T ss_pred hcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 4 22331 1 345444 443 34555555444 899999999999999998876654444
Q ss_pred CChHHHHHHHHHHhCCcchHHHHHHHHH
Q 042597 166 TSIPELAETLARECSGLPLALKTVGRAM 193 (693)
Q Consensus 166 ~~~~~~~~~I~~~~~G~Plal~~~~~~l 193 (693)
++..+-|++.+.|....+..+-..+
T Consensus 183 ---~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 183 ---DEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred ---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 7788899999988776665554433
No 45
>PF05729 NACHT: NACHT domain
Probab=98.80 E-value=2.1e-08 Score=92.41 Aligned_cols=124 Identities=19% Similarity=0.325 Sum_probs=79.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCC----CCEEEEEEEeccCCchhh---h---hh---ch-hHHHHHHHHHH-c
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNFCHQQHN----FDVVIWAAVIGFSDDKKW---K---EK---SL-QDKAADISSIL-S 98 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~~~~~~~----f~~~~wv~~~~~~~~~~~---~---~~---~~-~~~~~~l~~~l-~ 98 (693)
+++.|+|.+|+||||++++++.++.. ... +...+|+........... . .. .. ......+.... +
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 79 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAE-EEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEK 79 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHh-cCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHc
Confidence 57999999999999999999998832 222 345667766333221110 0 00 00 00011111222 5
Q ss_pred cCcEEEEEeCcccccc-hh------------hh--------hhhhhcccchhh---hhhcCCc-eEEeccCCchHHHHHH
Q 042597 99 RKKFVLLLDDIWERID-LK------------EL--------VSLFLTTRSVDV---CDQMDAE-KLEVYSLANDEAWKLF 153 (693)
Q Consensus 99 ~~~~LlvlDdv~~~~~-~~------------~~--------~~iliTtr~~~~---~~~~~~~-~~~l~~l~~~e~~~l~ 153 (693)
.+++++|+|++++... .. .+ .+++||+|+... ....... .+.+.+|++++..+++
T Consensus 80 ~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (166)
T PF05729_consen 80 NKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYL 159 (166)
T ss_pred CCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHH
Confidence 6899999999986643 11 11 789999999766 2223333 4999999999999999
Q ss_pred HHHhh
Q 042597 154 QEMVD 158 (693)
Q Consensus 154 ~~~~~ 158 (693)
.+++.
T Consensus 160 ~~~f~ 164 (166)
T PF05729_consen 160 RKYFS 164 (166)
T ss_pred HHHhh
Confidence 87653
No 46
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=7.4e-10 Score=109.86 Aligned_cols=110 Identities=22% Similarity=0.202 Sum_probs=74.0
Q ss_pred CCCCccceeeccccccccccc-cccCCCCcccEEEccCCcchh---hchHhhhccccccEEeeCCCCCCccChh--hhcC
Q 042597 358 PTCSRLITLLLYENWIEEITD-GFFQPMSSLRVLALGRNFFLS---KLRSGIANLVSLHHLDLSSTNITGLPQD--LKAL 431 (693)
Q Consensus 358 ~~~~~L~~L~l~~~~l~~~~~-~~~~~l~~L~~L~L~~~~~~~---~~p~~~~~l~~L~~L~l~~~~i~~lp~~--~~~l 431 (693)
+++++|+.+.+.++.+...+. +....|++++.|||+.| .+. .+.+-...|++|+.|+++.|.+.....+ -..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 568889999999887766553 33567999999999998 443 3445567889999999999877663322 3356
Q ss_pred CCCcEeccCCcccccccccccccCCCccccccccccC
Q 042597 432 EKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECG 468 (693)
Q Consensus 432 ~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~ 468 (693)
+.|+.|.++.|.....--..+...+++|+.|++.+|.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence 7777777777732211111223456777777777663
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.79 E-value=5.2e-09 Score=111.21 Aligned_cols=194 Identities=28% Similarity=0.330 Sum_probs=139.7
Q ss_pred eeeeccccc-hhhccCCCCCccceeeccccccccccccccCCCC-cccEEEccCCcchhhchHhhhccccccEEeeCCCC
Q 042597 343 RVSLMDNRI-LRLLEIPTCSRLITLLLYENWIEEITDGFFQPMS-SLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTN 420 (693)
Q Consensus 343 ~l~l~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~-~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 420 (693)
.+....+.. ...........+..|.+.++.++.+++. ...++ +|+.|++++| .+..+|..+..+++|+.|+++.|+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhccccccccc-chhhhhhhhhccccccccccCCch
Confidence 355555555 3344456668899999999999888875 45564 8999999999 888888788999999999999999
Q ss_pred CCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCcee
Q 042597 421 ITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNVL 500 (693)
Q Consensus 421 i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l 500 (693)
++.+|...+.+++|+.|++++| .+..+|.. ...+..|++|.+.+|.... .+..+.+++.+..+
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~-~~~~~~L~~l~~~~N~~~~---------------~~~~~~~~~~l~~l 237 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGN-KISDLPPE-IELLSALEELDLSNNSIIE---------------LLSSLSNLKNLSGL 237 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCC-ccccCchh-hhhhhhhhhhhhcCCccee---------------cchhhhhccccccc
Confidence 9999988778999999999998 88888875 3456669999998874222 22233333333333
Q ss_pred EEEeechhhHhhhhccchhhhhhcccccceeEeccccccccccccccCCccEEEEeccccccchhhhhcCCccEEEEecc
Q 042597 501 SWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVKKRFRSGFRSLNTVRVNGCKVKDLTWLVFVQNLKELEISFC 580 (693)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~l~~l~~L~~L~l~~~ 580 (693)
.+..... +.+ ....+.+++|+.|++++|.++.++.++.+.+|+.|+++++
T Consensus 238 ~l~~n~~---------------------~~~---------~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 238 ELSNNKL---------------------EDL---------PESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred ccCCcee---------------------eec---------cchhccccccceeccccccccccccccccCccCEEeccCc
Confidence 3221110 000 1123557779999999998888888888899999999888
Q ss_pred ccchh
Q 042597 581 HAVED 585 (693)
Q Consensus 581 ~~~~~ 585 (693)
.....
T Consensus 288 ~~~~~ 292 (394)
T COG4886 288 SLSNA 292 (394)
T ss_pred ccccc
Confidence 65443
No 48
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=1.5e-07 Score=100.86 Aligned_cols=172 Identities=16% Similarity=0.153 Sum_probs=105.2
Q ss_pred CcccchHHHHHHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE-------------ecc
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV-------------IGF 75 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~-------------~~~ 75 (693)
+.++|.+..++.|..++.. ++. +.+.++|++|+||||+|+.+++.. ...+.+...+|.|. .+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~--~~l~ha~Lf~GppGtGKTTlA~~lA~~l-~c~~~~~~~cg~C~sc~~i~~~~h~dv~el 90 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQ--GRLGHAYLFSGPRGVGKTTTARLIAMAV-NCSGEDPKPCGECESCLAVRRGAHPDVLEI 90 (504)
T ss_pred HHhcChHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHH-hccCCCCCCCCcChhhHHHhcCCCCceEEe
Confidence 6789999999999998877 444 556999999999999999999987 32222211222211 111
Q ss_pred CCchhhhhhchhHHHHHHHH-HHccCcEEEEEeCccccc--chhhh----------hh-hhhcccchhhhhhcCCc--eE
Q 042597 76 SDDKKWKEKSLQDKAADISS-ILSRKKFVLLLDDIWERI--DLKEL----------VS-LFLTTRSVDVCDQMDAE--KL 139 (693)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~--~~~~~----------~~-iliTtr~~~~~~~~~~~--~~ 139 (693)
............+....+.. -..+++-++|||+++... .+..+ .. |++|+....+....... .+
T Consensus 91 ~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~ 170 (504)
T PRK14963 91 DAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHF 170 (504)
T ss_pred cccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEE
Confidence 11000111111112111111 123456689999998663 23333 12 44555444443333332 39
Q ss_pred EeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHH
Q 042597 140 EVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALK 187 (693)
Q Consensus 140 ~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~ 187 (693)
++.+++.++..+.+.+.+...+...+ .+.+..|++.++|.+.-+.
T Consensus 171 ~f~~ls~~el~~~L~~i~~~egi~i~---~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 171 RFRRLTEEEIAGKLRRLLEAEGREAE---PEALQLVARLADGAMRDAE 215 (504)
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 99999999999999998766543322 6788999999999986553
No 49
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.71 E-value=4e-07 Score=98.91 Aligned_cols=176 Identities=14% Similarity=0.195 Sum_probs=106.5
Q ss_pred CcccchHHHHHHHHHHhhhcCCC-eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCC---E-----------EEEEEEec
Q 042597 10 HTVVGQELLLYRVWRCITDQEKN-RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFD---V-----------VIWAAVIG 74 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~-~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~---~-----------~~wv~~~~ 74 (693)
+.+||.+..++.|.+++.. ++ .+.+.++|+.|+||||+|+.+++.+ ......+ | --|.++.+
T Consensus 16 dEVIGQe~Vv~~L~~aL~~--gRL~HAyLFtGPpGvGKTTlAriLAKaL-nCe~~~~~~PCG~C~sCr~I~~G~h~DviE 92 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDG--GRLHHAYLFTGTRGVGKTTLSRIFAKAL-NCETGVTSQPCGVCRACREIDEGRFVDYVE 92 (830)
T ss_pred HHHcCcHHHHHHHHHHHhc--CCCCeEEEEECCCCCCHHHHHHHHHHHh-cCccCCCCCCCcccHHHHHHhcCCCceEEE
Confidence 6799999999999999876 44 4566899999999999999999876 2211110 0 00111111
Q ss_pred cCCchhhhhhchhHHHHHHHHH-HccCcEEEEEeCcccccc--hhhh----------hhhhhcccc-hhhhhhcCCce--
Q 042597 75 FSDDKKWKEKSLQDKAADISSI-LSRKKFVLLLDDIWERID--LKEL----------VSLFLTTRS-VDVCDQMDAEK-- 138 (693)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~--~~~~----------~~iliTtr~-~~~~~~~~~~~-- 138 (693)
+.........+..+++...... ..++.-++|||+++.... +..+ .++|++|++ ..+........
T Consensus 93 IDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~ 172 (830)
T PRK07003 93 MDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQ 172 (830)
T ss_pred ecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEE
Confidence 1110001111122222222111 134455888999997743 3333 345555544 44443333333
Q ss_pred EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcch-HHHHHHH
Q 042597 139 LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPL-ALKTVGR 191 (693)
Q Consensus 139 ~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-al~~~~~ 191 (693)
+++..++.++..+.+.+.+.......+ .+..+.|++.++|... ++..+-.
T Consensus 173 f~Fk~Ls~eeIv~~L~~Il~~EgI~id---~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 173 FNLKQMPAGHIVSHLERILGEERIAFE---PQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred EecCCcCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999999999988765543322 6788999999998764 5544333
No 50
>PRK04195 replication factor C large subunit; Provisional
Probab=98.71 E-value=5e-07 Score=97.76 Aligned_cols=171 Identities=17% Similarity=0.237 Sum_probs=108.0
Q ss_pred CcccchHHHHHHHHHHhhhc--CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchh
Q 042597 10 HTVVGQELLLYRVWRCITDQ--EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQ 87 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~--~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~ 87 (693)
+.++|+++.++++.+|+... +...+.+.|+|++|+||||+|+.+++.. . ++.+ -++...... .....
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el---~--~~~i-elnasd~r~-----~~~i~ 82 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY---G--WEVI-ELNASDQRT-----ADVIE 82 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc---C--CCEE-EEccccccc-----HHHHH
Confidence 67999999999999999762 2236889999999999999999999986 1 2221 222211111 01111
Q ss_pred HHHHHHHH--HHc-cCcEEEEEeCcccccc------hhhh--------hhhhhcccchhh-hh-hcC--CceEEeccCCc
Q 042597 88 DKAADISS--ILS-RKKFVLLLDDIWERID------LKEL--------VSLFLTTRSVDV-CD-QMD--AEKLEVYSLAN 146 (693)
Q Consensus 88 ~~~~~l~~--~l~-~~~~LlvlDdv~~~~~------~~~~--------~~iliTtr~~~~-~~-~~~--~~~~~l~~l~~ 146 (693)
........ .+- .++-+||+||++.... +..+ ..||+|+.+..- .. ... ...+.+.+++.
T Consensus 83 ~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~ 162 (482)
T PRK04195 83 RVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLRELRNACLMIEFKRLST 162 (482)
T ss_pred HHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCCCCEEEeccCccccchhhHhccceEEEecCCCH
Confidence 11111110 112 3677999999987532 3333 446666644321 11 111 22389999999
Q ss_pred hHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHHHh
Q 042597 147 DEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRAMK 194 (693)
Q Consensus 147 ~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~l~ 194 (693)
++....+.+.+...+...+ .++.+.|++.++|....+......+.
T Consensus 163 ~~i~~~L~~i~~~egi~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 163 RSIVPVLKRICRKEGIECD---DEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 9999999888766554333 67889999999998866655444443
No 51
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.69 E-value=1.7e-07 Score=103.83 Aligned_cols=175 Identities=18% Similarity=0.198 Sum_probs=107.9
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeE-EEEEcCCCCcHHHHHHHHHhhhccccCCCC------E--------EEEEEEec
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRI-IGLYGTGGVGKTTILTQVNNNFCHQQHNFD------V--------VIWAAVIG 74 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~v-v~i~G~~GiGKTtla~~~~~~~~~~~~~f~------~--------~~wv~~~~ 74 (693)
..+||.+..+..|.+++.. ++... ..++|++|+||||+|+.+++.. ....... | ..+.++.+
T Consensus 16 ddIIGQe~Iv~~LknaI~~--~rl~HAyLFtGPpGtGKTTLARiLAk~L-nce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQ--QRLHHAYLFTGTRGVGKTSLARLFAKGL-NCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred HHhcCcHHHHHHHHHHHHh--CCCCeEEEEECCCCCCHHHHHHHHHHhc-cCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 6799999999999999876 55554 5899999999999999999987 2221110 0 00011111
Q ss_pred cCCchhhhhhchhHHHHHHHH-HHccCcEEEEEeCccccc--chhhh----------h-hhhhcccchhhhhhcCCc--e
Q 042597 75 FSDDKKWKEKSLQDKAADISS-ILSRKKFVLLLDDIWERI--DLKEL----------V-SLFLTTRSVDVCDQMDAE--K 138 (693)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~--~~~~~----------~-~iliTtr~~~~~~~~~~~--~ 138 (693)
.............+++..+.. -.++++-++|||+++... ....+ . -|++||....+......+ .
T Consensus 93 idAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~ 172 (944)
T PRK14949 93 VDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQ 172 (944)
T ss_pred eccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheE
Confidence 111000111112222222221 124677799999999773 33333 2 344555555554333323 3
Q ss_pred EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHH
Q 042597 139 LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVG 190 (693)
Q Consensus 139 ~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~ 190 (693)
+++.+++.++..+++.+.+....... -.+.++.|++.++|.|.-+..+.
T Consensus 173 f~fkpLs~eEI~~~L~~il~~EgI~~---edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 173 FNLKSLTQDEIGTQLNHILTQEQLPF---EAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred EeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 99999999999999988776543222 25788999999999996554443
No 52
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.68 E-value=2.4e-07 Score=96.68 Aligned_cols=174 Identities=13% Similarity=0.141 Sum_probs=107.2
Q ss_pred CcccchHHHHHHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEE-EEE-------------EEec
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVV-IWA-------------AVIG 74 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~-~wv-------------~~~~ 74 (693)
+.+||.+..+..|..++.. ++. +.+.++|++|+||||+|+.+++.. ......... ... ++.+
T Consensus 18 ~dvVGQe~iv~~L~~~i~~--~ri~ha~Lf~GP~GtGKTTlAriLAk~L-nce~~~~~~pCg~C~sC~~i~~g~~~dviE 94 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKS--GKIGHAYIFFGPRGVGKTTIARILAKRL-NCENPIGNEPCNECTSCLEITKGISSDVLE 94 (484)
T ss_pred HHHhChHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHhc-CcccccCccccCCCcHHHHHHccCCcccee
Confidence 6799999999999998877 444 468999999999999999999987 222110000 000 0011
Q ss_pred cCCchhhhhhchhHHHHHHHHH-HccCcEEEEEeCccccc--chhhh-----------hhhhhcccchhhhhhcCCce--
Q 042597 75 FSDDKKWKEKSLQDKAADISSI-LSRKKFVLLLDDIWERI--DLKEL-----------VSLFLTTRSVDVCDQMDAEK-- 138 (693)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~--~~~~~-----------~~iliTtr~~~~~~~~~~~~-- 138 (693)
.............+....+... ..++.-++|||+++... .+.++ .-|+.||....+......+.
T Consensus 95 Idaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~ 174 (484)
T PRK14956 95 IDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQD 174 (484)
T ss_pred echhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhhe
Confidence 1100000111112222222211 24566699999999663 24444 22456666666554444443
Q ss_pred EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHH
Q 042597 139 LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTV 189 (693)
Q Consensus 139 ~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~ 189 (693)
+.+.+++.++..+.+.+.+...+..-+ .+....|++.++|.+.-+..+
T Consensus 175 ~~f~~ls~~~i~~~L~~i~~~Egi~~e---~eAL~~Ia~~S~Gd~RdAL~l 222 (484)
T PRK14956 175 FIFKKVPLSVLQDYSEKLCKIENVQYD---QEGLFWIAKKGDGSVRDMLSF 222 (484)
T ss_pred eeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCChHHHHHHH
Confidence 899999999999999887765442222 678899999999998544333
No 53
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.66 E-value=1.1e-06 Score=96.09 Aligned_cols=186 Identities=16% Similarity=0.134 Sum_probs=104.3
Q ss_pred CCcccchHHHHHHHHHHhhh---cCCCeeEEEEEcCCCCcHHHHHHHHHhhhcccc--CCCC--EEEEEEEeccCCchhh
Q 042597 9 DHTVVGQELLLYRVWRCITD---QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQ--HNFD--VVIWAAVIGFSDDKKW 81 (693)
Q Consensus 9 ~~~~vGr~~~~~~l~~~l~~---~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~--~~f~--~~~wv~~~~~~~~~~~ 81 (693)
++.+.||++++++|...|.. +.....++.|+|++|.|||+.++.|.+++.... .... .++++++.........
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 36789999999999999875 223346788999999999999999998772211 1111 2466666332211100
Q ss_pred --------------hhhchhHHHHHHHHHHc---cCcEEEEEeCcccccc-----hhhh--------hhhh--hcccc--
Q 042597 82 --------------KEKSLQDKAADISSILS---RKKFVLLLDDIWERID-----LKEL--------VSLF--LTTRS-- 127 (693)
Q Consensus 82 --------------~~~~~~~~~~~l~~~l~---~~~~LlvlDdv~~~~~-----~~~~--------~~il--iTtr~-- 127 (693)
......+....+...+. ....+|||||++.... +..+ ++|+ .++.+
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlD 913 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMD 913 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchh
Confidence 01112233344444442 2245899999986532 2111 2222 22222
Q ss_pred ------hhhhhhcCCceEEeccCCchHHHHHHHHHhhcccCCCCCChHH-HHHHHHHHhCCcchHHHHHHHHHh
Q 042597 128 ------VDVCDQMDAEKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPE-LAETLARECSGLPLALKTVGRAMK 194 (693)
Q Consensus 128 ------~~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~-~~~~I~~~~~G~Plal~~~~~~l~ 194 (693)
+.+..+++...+.+.+++.+|..+++.+++.......+++..+ +++.++...|..-.||.++-.+..
T Consensus 914 LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 914 LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred cchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 2223334444478899999999999999876432111211112 222233333445566666655554
No 54
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=3.4e-09 Score=99.95 Aligned_cols=87 Identities=22% Similarity=0.219 Sum_probs=57.1
Q ss_pred CcccEEEccCCcchh-hchHhhhccccccEEeeCCCCCCc-cChhhhcCCCCcEeccCCcccccccccc-cccCCCcccc
Q 042597 385 SSLRVLALGRNFFLS-KLRSGIANLVSLHHLDLSSTNITG-LPQDLKALEKLRYLNLDHAYKLSIIPHK-LKSGFSKLEA 461 (693)
Q Consensus 385 ~~L~~L~L~~~~~~~-~~p~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~l~~~p~~-~~~~l~~L~~ 461 (693)
..|++|||++..... .+-..++.+.+|+.|.+.++++.+ +-..+.+=.+|+.|+++.|..++..... ++.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 347777887773222 333446677788888888877776 5566777778888888877655544322 2466777777
Q ss_pred ccccccCCCc
Q 042597 462 LRLLECGSGG 471 (693)
Q Consensus 462 L~l~~~~~~~ 471 (693)
|+++.|....
T Consensus 265 LNlsWc~l~~ 274 (419)
T KOG2120|consen 265 LNLSWCFLFT 274 (419)
T ss_pred cCchHhhccc
Confidence 7777776443
No 55
>PRK08727 hypothetical protein; Validated
Probab=98.65 E-value=7.3e-07 Score=86.51 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=95.3
Q ss_pred cccchH-HHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHH
Q 042597 11 TVVGQE-LLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDK 89 (693)
Q Consensus 11 ~~vGr~-~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~ 89 (693)
.||+.. ..+..+...... .....+.|+|++|+|||.|++++++.. . .+...+.|+.+.+... .
T Consensus 20 ~f~~~~~n~~~~~~~~~~~--~~~~~l~l~G~~G~GKThL~~a~~~~~-~--~~~~~~~y~~~~~~~~-----------~ 83 (233)
T PRK08727 20 SYIAAPDGLLAQLQALAAG--QSSDWLYLSGPAGTGKTHLALALCAAA-E--QAGRSSAYLPLQAAAG-----------R 83 (233)
T ss_pred hccCCcHHHHHHHHHHHhc--cCCCeEEEECCCCCCHHHHHHHHHHHH-H--HcCCcEEEEeHHHhhh-----------h
Confidence 355544 334433333322 234569999999999999999999986 2 2223455665422111 0
Q ss_pred HHHHHHHHccCcEEEEEeCcccccc---hhh-h-----------hhhhhcccch---------hhhhhcCCc-eEEeccC
Q 042597 90 AADISSILSRKKFVLLLDDIWERID---LKE-L-----------VSLFLTTRSV---------DVCDQMDAE-KLEVYSL 144 (693)
Q Consensus 90 ~~~l~~~l~~~~~LlvlDdv~~~~~---~~~-~-----------~~iliTtr~~---------~~~~~~~~~-~~~l~~l 144 (693)
.....+.+. +.-++||||++.... +.. + ..+|+|++.. ++..+.... .+.+.++
T Consensus 84 ~~~~~~~l~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~ 162 (233)
T PRK08727 84 LRDALEALE-GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVL 162 (233)
T ss_pred HHHHHHHHh-cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCC
Confidence 111112222 334899999985531 221 1 3488888752 223333333 3899999
Q ss_pred CchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHH
Q 042597 145 ANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLAL 186 (693)
Q Consensus 145 ~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal 186 (693)
+.++-.+++.+++...+...+ ++..+-|++.++|....+
T Consensus 163 ~~e~~~~iL~~~a~~~~l~l~---~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 163 DDVARAAVLRERAQRRGLALD---EAAIDWLLTHGERELAGL 201 (233)
T ss_pred CHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHH
Confidence 999999999998766554333 678888999888766555
No 56
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.64 E-value=2.3e-06 Score=95.52 Aligned_cols=166 Identities=21% Similarity=0.279 Sum_probs=97.9
Q ss_pred CcccchHHHHH---HHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhch
Q 042597 10 HTVVGQELLLY---RVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSL 86 (693)
Q Consensus 10 ~~~vGr~~~~~---~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~ 86 (693)
+.|||++..+. .+...+.. ++...+.++|++|+||||+|+.+++.. ..+|. .++... . ...+.
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~---~lna~~--~----~i~di 93 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHT---RAHFS---SLNAVL--A----GVKDL 93 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHh---cCcce---eehhhh--h----hhHHH
Confidence 56899999885 45555554 566778999999999999999999876 34441 111110 0 11112
Q ss_pred hHHHHHHHHHH--ccCcEEEEEeCccccc--chhhh------hh-hhh--cccchh--hhhhc--CCceEEeccCCchHH
Q 042597 87 QDKAADISSIL--SRKKFVLLLDDIWERI--DLKEL------VS-LFL--TTRSVD--VCDQM--DAEKLEVYSLANDEA 149 (693)
Q Consensus 87 ~~~~~~l~~~l--~~~~~LlvlDdv~~~~--~~~~~------~~-ili--Ttr~~~--~~~~~--~~~~~~l~~l~~~e~ 149 (693)
.+......+.+ .+++.++||||++... +.+.+ +. +++ ||++.. +.... +...+.+++++.++.
T Consensus 94 r~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi 173 (725)
T PRK13341 94 RAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDL 173 (725)
T ss_pred HHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHH
Confidence 22222332222 2467799999998653 23333 22 233 344431 11111 122389999999999
Q ss_pred HHHHHHHhhccc----CCCCCChHHHHHHHHHHhCCcchHHHHH
Q 042597 150 WKLFQEMVDRST----LGSHTSIPELAETLARECSGLPLALKTV 189 (693)
Q Consensus 150 ~~l~~~~~~~~~----~~~~~~~~~~~~~I~~~~~G~Plal~~~ 189 (693)
..++.+.+.... .....--++..+.|++.+.|....+.-+
T Consensus 174 ~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~ 217 (725)
T PRK13341 174 HQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNA 217 (725)
T ss_pred HHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 999988765211 0111122567799999998876544433
No 57
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.62 E-value=8.4e-07 Score=92.18 Aligned_cols=174 Identities=16% Similarity=0.165 Sum_probs=105.3
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCC-EEEEEEEeccCCch--hh-----
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFD-VVIWAAVIGFSDDK--KW----- 81 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~--~~----- 81 (693)
+.++|++..++.+..++.. +..+.+.++|++|+||||+|+.+++.. .. ..+. ..+.+++.+..... ..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~GtGKT~la~~~~~~l-~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDS--PNLPHLLVQGPPGSGKTAAVRALAREL-YG-DPWENNFTEFNVADFFDQGKKYLVEDPR 90 (337)
T ss_pred HHhcCCHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHh-cC-cccccceEEechhhhhhcchhhhhcCcc
Confidence 6789999999999998876 455678899999999999999999876 22 1221 23444443221100 00
Q ss_pred -----hh-----hchhHHHHHHH-HHH-----ccCcEEEEEeCcccccc--hhhh----------hhhhhcccc-hhhhh
Q 042597 82 -----KE-----KSLQDKAADIS-SIL-----SRKKFVLLLDDIWERID--LKEL----------VSLFLTTRS-VDVCD 132 (693)
Q Consensus 82 -----~~-----~~~~~~~~~l~-~~l-----~~~~~LlvlDdv~~~~~--~~~~----------~~iliTtr~-~~~~~ 132 (693)
.. ....+....+. ... .+.+-++|+||++.... ...+ .++|+||.. ..+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIP 170 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCch
Confidence 00 00011111111 111 13345899999986632 1112 456666543 33322
Q ss_pred hcCCc--eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHH
Q 042597 133 QMDAE--KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVG 190 (693)
Q Consensus 133 ~~~~~--~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~ 190 (693)
..... .+.+.+++.++...++.+.+...+...+ .+.++.+++.++|.+..+....
T Consensus 171 ~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~---~~al~~l~~~~~gdlr~l~~~l 227 (337)
T PRK12402 171 PIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD---DDGLELIAYYAGGDLRKAILTL 227 (337)
T ss_pred hhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 22222 3888999999999999887765543322 6788999999999876554433
No 58
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.62 E-value=4.2e-07 Score=94.50 Aligned_cols=171 Identities=13% Similarity=0.224 Sum_probs=103.7
Q ss_pred CcccchHHHHHHHHHHhhhcCCC-eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCC---E-E----------EEEEEec
Q 042597 10 HTVVGQELLLYRVWRCITDQEKN-RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFD---V-V----------IWAAVIG 74 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~-~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~---~-~----------~wv~~~~ 74 (693)
+.+||.+..++.+...+.. ++ .+.+.++|++|+||||+|+.+++.. ....... | . .+.++.+
T Consensus 16 ~~iiGq~~~~~~l~~~~~~--~~~~h~~L~~Gp~G~GKTtla~~la~~l-~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~ 92 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSL--GRIHHAWLLSGTRGVGKTTIARLLAKSL-NCQNGITSNPCRKCIICKEIEKGLCLDLIE 92 (363)
T ss_pred hhccChHHHHHHHHHHHHc--CCCCeEEEEecCCCCCHHHHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHhcCCCCceEE
Confidence 6799999999999998876 34 3567899999999999999999876 2111110 0 0 0011111
Q ss_pred cCCchhhhhhchhHHHHHHHHHH-----ccCcEEEEEeCcccccc--hhhh----------hhhhhcc-cchhhhhhcCC
Q 042597 75 FSDDKKWKEKSLQDKAADISSIL-----SRKKFVLLLDDIWERID--LKEL----------VSLFLTT-RSVDVCDQMDA 136 (693)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~--~~~~----------~~iliTt-r~~~~~~~~~~ 136 (693)
... . .....++ +..+.+.+ .+++-++|+|+++.... +..+ .++|++| ....+......
T Consensus 93 ~~~-~--~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~S 168 (363)
T PRK14961 93 IDA-A--SRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILS 168 (363)
T ss_pred ecc-c--ccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHh
Confidence 111 0 0011111 22222222 23456999999987753 3333 2345444 43444333322
Q ss_pred --ceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHH
Q 042597 137 --EKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVG 190 (693)
Q Consensus 137 --~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~ 190 (693)
..+++.+++.++..+.+.+.+...+...+ ++.++.|++.++|.|..+....
T Consensus 169 Rc~~~~~~~l~~~el~~~L~~~~~~~g~~i~---~~al~~ia~~s~G~~R~al~~l 221 (363)
T PRK14961 169 RCLQFKLKIISEEKIFNFLKYILIKESIDTD---EYALKLIAYHAHGSMRDALNLL 221 (363)
T ss_pred hceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 23899999999999999887765442222 5778899999999886444333
No 59
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.61 E-value=1.1e-06 Score=85.37 Aligned_cols=161 Identities=12% Similarity=0.104 Sum_probs=98.1
Q ss_pred ccchHH-HHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHH
Q 042597 12 VVGQEL-LLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKA 90 (693)
Q Consensus 12 ~vGr~~-~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~ 90 (693)
++|... .+..+..+... .....+.|+|++|+|||+|++.+++.. ......+.++.+.... . ..
T Consensus 25 ~~~~n~~a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~~~---~~~~~~v~y~~~~~~~------~-----~~ 88 (235)
T PRK08084 25 YPGDNDSLLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACAEL---SQRGRAVGYVPLDKRA------W-----FV 88 (235)
T ss_pred ccCccHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEEHHHHh------h-----hh
Confidence 446333 33334444333 344689999999999999999999986 2223345566552210 0 01
Q ss_pred HHHHHHHccCcEEEEEeCccccc---chhhh-----------h--hhhhcccch---------hhhhhcCCce-EEeccC
Q 042597 91 ADISSILSRKKFVLLLDDIWERI---DLKEL-----------V--SLFLTTRSV---------DVCDQMDAEK-LEVYSL 144 (693)
Q Consensus 91 ~~l~~~l~~~~~LlvlDdv~~~~---~~~~~-----------~--~iliTtr~~---------~~~~~~~~~~-~~l~~l 144 (693)
..+.+.++. --+++|||++... +|... + ++|+||+.. ++..++.+.. +++.++
T Consensus 89 ~~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~ 167 (235)
T PRK08084 89 PEVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPL 167 (235)
T ss_pred HHHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCC
Confidence 112222222 2478999997642 22211 2 578888754 2334444444 899999
Q ss_pred CchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHH
Q 042597 145 ANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRA 192 (693)
Q Consensus 145 ~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~ 192 (693)
++++-.+++.+++...+...+ ++..+-|++.+.|....+..+-..
T Consensus 168 ~~~~~~~~l~~~a~~~~~~l~---~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 168 SDEEKLQALQLRARLRGFELP---EDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred CHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhhcCCHHHHHHHHHH
Confidence 999999999887765543333 778888999888776655544433
No 60
>PLN03025 replication factor C subunit; Provisional
Probab=98.61 E-value=2.9e-07 Score=94.12 Aligned_cols=167 Identities=17% Similarity=0.213 Sum_probs=100.5
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHH
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDK 89 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~ 89 (693)
+.++|.++.++.+..++.. ++.+.+.++|++|+||||+|..+++.. ... .|.. . +.+.............+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~--~~~~~lll~Gp~G~GKTtla~~la~~l-~~~-~~~~-~---~~eln~sd~~~~~~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARD--GNMPNLILSGPPGTGKTTSILALAHEL-LGP-NYKE-A---VLELNASDDRGIDVVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHH-hcc-cCcc-c---eeeecccccccHHHHHHH
Confidence 6789999999888888765 555668899999999999999999986 211 2211 1 111111011011111112
Q ss_pred HHHHHHH---H-ccCcEEEEEeCcccccc--hhhh----------hhhhhcccc-hhhhhhcCC--ceEEeccCCchHHH
Q 042597 90 AADISSI---L-SRKKFVLLLDDIWERID--LKEL----------VSLFLTTRS-VDVCDQMDA--EKLEVYSLANDEAW 150 (693)
Q Consensus 90 ~~~l~~~---l-~~~~~LlvlDdv~~~~~--~~~~----------~~iliTtr~-~~~~~~~~~--~~~~l~~l~~~e~~ 150 (693)
++...+. + .++.-++||||++.... ...+ .++++++.. ..+...... ..+++.+++.++..
T Consensus 85 i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~ 164 (319)
T PLN03025 85 IKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEIL 164 (319)
T ss_pred HHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHH
Confidence 2111111 1 23456899999997632 1222 345554433 222222221 23899999999999
Q ss_pred HHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHH
Q 042597 151 KLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALK 187 (693)
Q Consensus 151 ~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~ 187 (693)
+.+.+.+...+...+ .+..+.|++.++|....+.
T Consensus 165 ~~L~~i~~~egi~i~---~~~l~~i~~~~~gDlR~al 198 (319)
T PLN03025 165 GRLMKVVEAEKVPYV---PEGLEAIIFTADGDMRQAL 198 (319)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 999888876553333 6778999999998774444
No 61
>PF13173 AAA_14: AAA domain
Probab=98.61 E-value=1.2e-07 Score=82.80 Aligned_cols=109 Identities=23% Similarity=0.323 Sum_probs=72.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHccCcEEEEEeCcccc
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILSRKKFVLLLDDIWER 112 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~ 112 (693)
.+++.|.|+.|+||||++++++.+. . ....+++++..+... ......+ ....+.+....+..+++||+++..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~---~-~~~~~~yi~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDL---L-PPENILYINFDDPRD---RRLADPD-LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh---c-ccccceeeccCCHHH---HHHhhhh-hHHHHHHhhccCCcEEEEehhhhh
Confidence 4789999999999999999999887 2 345566776522211 1111111 334444444457889999999999
Q ss_pred cchhhh----------hhhhhcccchhhhhh-----cCCce--EEeccCCchHH
Q 042597 113 IDLKEL----------VSLFLTTRSVDVCDQ-----MDAEK--LEVYSLANDEA 149 (693)
Q Consensus 113 ~~~~~~----------~~iliTtr~~~~~~~-----~~~~~--~~l~~l~~~e~ 149 (693)
.+|... .+|++|+........ ..... +++.||+..|-
T Consensus 74 ~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 74 PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 888776 578888887665532 11122 78888887763
No 62
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=6.3e-07 Score=96.32 Aligned_cols=173 Identities=16% Similarity=0.195 Sum_probs=105.3
Q ss_pred CcccchHHHHHHHHHHhhhcCCC-eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEE--------------EEEEEec
Q 042597 10 HTVVGQELLLYRVWRCITDQEKN-RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVV--------------IWAAVIG 74 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~-~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~--------------~wv~~~~ 74 (693)
+.+||.+.....|..++.. ++ .+.+.++|++|+||||+|+.+++.. ......+.. .+.++.+
T Consensus 15 ddVIGQe~vv~~L~~aI~~--grl~HAyLF~GPpGvGKTTlAriLAK~L-nC~~~~~~~pCg~C~sC~~I~~g~hpDviE 91 (702)
T PRK14960 15 NELVGQNHVSRALSSALER--GRLHHAYLFTGTRGVGKTTIARILAKCL-NCETGVTSTPCEVCATCKAVNEGRFIDLIE 91 (702)
T ss_pred HHhcCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHh-CCCcCCCCCCCccCHHHHHHhcCCCCceEE
Confidence 6799999999999999976 33 4677999999999999999999876 221111000 0011111
Q ss_pred cCCchhhhhhchhHHHHHHHH-HHccCcEEEEEeCccccc--chhhh----------hhhhhcccc-hhhhhhcCC--ce
Q 042597 75 FSDDKKWKEKSLQDKAADISS-ILSRKKFVLLLDDIWERI--DLKEL----------VSLFLTTRS-VDVCDQMDA--EK 138 (693)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~--~~~~~----------~~iliTtr~-~~~~~~~~~--~~ 138 (693)
..........+..+.+..... -..+++-++|||+|+... ....+ .++|++|.+ ..+...... ..
T Consensus 92 IDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~ 171 (702)
T PRK14960 92 IDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQ 171 (702)
T ss_pred ecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhhe
Confidence 111000111111222222111 123566689999999763 33333 355555554 333222222 23
Q ss_pred EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHH
Q 042597 139 LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKT 188 (693)
Q Consensus 139 ~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~ 188 (693)
+++.+++.++..+.+.+.+...+...+ .+....|++.++|.+..+..
T Consensus 172 feFkpLs~eEI~k~L~~Il~kEgI~id---~eAL~~IA~~S~GdLRdALn 218 (702)
T PRK14960 172 FTLRPLAVDEITKHLGAILEKEQIAAD---QDAIWQIAESAQGSLRDALS 218 (702)
T ss_pred eeccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 899999999999999988776553333 67889999999998854443
No 63
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=1.3e-06 Score=89.46 Aligned_cols=178 Identities=14% Similarity=0.193 Sum_probs=106.7
Q ss_pred ecCCC-CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccC-CC----------CEEEE---
Q 042597 5 ELPVD-HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQH-NF----------DVVIW--- 69 (693)
Q Consensus 5 ~~p~~-~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~-~f----------~~~~w--- 69 (693)
+.|.. +.++|.++..+.+...+..+ .-...+.|+|+.|+||||+|..+++..-.... .+ ++..+
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i 95 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQI 95 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHH
Confidence 45544 67999999999999998762 23456899999999999999999998722100 01 01000
Q ss_pred --------EEEeccCCchh---hhhhchhHHHHHHHHHH-----ccCcEEEEEeCcccccc--hhhh-----------hh
Q 042597 70 --------AAVIGFSDDKK---WKEKSLQDKAADISSIL-----SRKKFVLLLDDIWERID--LKEL-----------VS 120 (693)
Q Consensus 70 --------v~~~~~~~~~~---~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~--~~~~-----------~~ 120 (693)
..+....+... ......++ +..+.+.+ .+++-++|||+++.... ...+ .-
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 00000000000 01111222 22344443 34666899999997632 2223 23
Q ss_pred hhhcccchhhhhhcCCc--eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHH
Q 042597 121 LFLTTRSVDVCDQMDAE--KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTV 189 (693)
Q Consensus 121 iliTtr~~~~~~~~~~~--~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~ 189 (693)
|++|++...+....... .+++.+++.++..+++.+...... --...+..+++.++|.|.....+
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-----~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-----SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 55665555444333333 399999999999999987432111 11456789999999999766544
No 64
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.58 E-value=9.2e-07 Score=84.67 Aligned_cols=175 Identities=22% Similarity=0.276 Sum_probs=100.7
Q ss_pred Ccccch-HHHHHHHHHHhhhc-CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchh
Q 042597 10 HTVVGQ-ELLLYRVWRCITDQ-EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQ 87 (693)
Q Consensus 10 ~~~vGr-~~~~~~l~~~l~~~-~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~ 87 (693)
..++|- .+......+.+... +.....+.|+|+.|.|||.|.+++++.. .....-..++|+++.++... ... ...+
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~-~~~~~~~~v~y~~~~~f~~~-~~~-~~~~ 85 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEA-QKQHPGKRVVYLSAEEFIRE-FAD-ALRD 85 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHH-HHHCTTS-EEEEEHHHHHHH-HHH-HHHT
T ss_pred cCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHH-HhccccccceeecHHHHHHH-HHH-HHHc
Confidence 445675 44444555555543 2345578999999999999999999987 32223335677766333221 000 0001
Q ss_pred HHHHHHHHHHccCcEEEEEeCcccccchh----hh-----------hhhhhcccch---------hhhhhcCCce-EEec
Q 042597 88 DKAADISSILSRKKFVLLLDDIWERIDLK----EL-----------VSLFLTTRSV---------DVCDQMDAEK-LEVY 142 (693)
Q Consensus 88 ~~~~~l~~~l~~~~~LlvlDdv~~~~~~~----~~-----------~~iliTtr~~---------~~~~~~~~~~-~~l~ 142 (693)
.....+++.+++ -=+++|||++....-. .+ .+||+|++.. ++..+..+.. +.+.
T Consensus 86 ~~~~~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~ 164 (219)
T PF00308_consen 86 GEIEEFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQ 164 (219)
T ss_dssp TSHHHHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE-
T ss_pred ccchhhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcC
Confidence 222344455553 3378899998664322 11 5788888543 2233344444 8999
Q ss_pred cCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHH
Q 042597 143 SLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGR 191 (693)
Q Consensus 143 ~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~ 191 (693)
+.+.++..+++.+++...+...+ ++.++-|++.+.+....+..+-.
T Consensus 165 ~pd~~~r~~il~~~a~~~~~~l~---~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 165 PPDDEDRRRILQKKAKERGIELP---EEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp ---HHHHHHHHHHHHHHTT--S----HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCc---HHHHHHHHHhhcCCHHHHHHHHH
Confidence 99999999999999887764443 67778888877766655544433
No 65
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=1.2e-06 Score=90.05 Aligned_cols=172 Identities=12% Similarity=0.091 Sum_probs=104.2
Q ss_pred ecCCC-CcccchHHHHHHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhccccC--------------------
Q 042597 5 ELPVD-HTVVGQELLLYRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCHQQH-------------------- 62 (693)
Q Consensus 5 ~~p~~-~~~vGr~~~~~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~~~~-------------------- 62 (693)
+.|.. +.+||.+...+.+.+.+.. ++. +...++|+.|+||+|+|..+++..-....
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~--~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~ 90 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS--GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP 90 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh
Confidence 45544 6799999999999998877 454 45889999999999999999987721110
Q ss_pred ---------CCCEEEEEEEeccCCchh---hhhhchhHHHHHHHHHH-----ccCcEEEEEeCcccccc--hhhh-----
Q 042597 63 ---------NFDVVIWAAVIGFSDDKK---WKEKSLQDKAADISSIL-----SRKKFVLLLDDIWERID--LKEL----- 118 (693)
Q Consensus 63 ---------~f~~~~wv~~~~~~~~~~---~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~--~~~~----- 118 (693)
|.|. .|+ ........ ......++ +..+.+.+ .+.+-++|||+++.... ...+
T Consensus 91 ~c~~i~~~~HPDl-~~i--~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE 166 (365)
T PRK07471 91 VARRIAAGAHGGL-LTL--ERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE 166 (365)
T ss_pred HHHHHHccCCCCe-EEE--ecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh
Confidence 1110 111 10000000 01111222 33444444 24567899999986632 2222
Q ss_pred -----hhhhhcccc-hhhhhhcCCce--EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHH
Q 042597 119 -----VSLFLTTRS-VDVCDQMDAEK--LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTV 189 (693)
Q Consensus 119 -----~~iliTtr~-~~~~~~~~~~~--~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~ 189 (693)
..+|++|.+ ..+........ +.+.+++.++..+++.+...... ......+++.++|.|+.+..+
T Consensus 167 epp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-------~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 167 EPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-------DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred cCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-------HHHHHHHHHHcCCCHHHHHHH
Confidence 334444444 44443333333 99999999999999987542211 233478899999999766544
No 66
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=7.6e-07 Score=95.46 Aligned_cols=169 Identities=13% Similarity=0.136 Sum_probs=106.9
Q ss_pred CcccchHHHHHHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhccccC------------------------CC
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCHQQH------------------------NF 64 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~~~~------------------------~f 64 (693)
+.+||.+..++.|.+++.. ++. +.+.++|+.|+||||+|+.+++.+ .... .+
T Consensus 16 ddVIGQe~vv~~L~~al~~--gRLpHA~LFtGP~GvGKTTLAriLAkaL-nC~~p~~~~g~~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQ--QRLHHAYLFTGTRGVGKTTLSRILAKSL-NCTGADGEGGITAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred HHHcCcHHHHHHHHHHHHh--CCCceEEEEECCCCCCHHHHHHHHHHHh-cCCCccccccCCCCCCcccHHHHHHHcCCC
Confidence 6799999999999999977 444 556899999999999999999877 2210 00
Q ss_pred CEEEEEEEeccCCchhhhhhchhHHHHHHHHH-HccCcEEEEEeCccccc--chhhh-----------hhhhhcccchhh
Q 042597 65 DVVIWAAVIGFSDDKKWKEKSLQDKAADISSI-LSRKKFVLLLDDIWERI--DLKEL-----------VSLFLTTRSVDV 130 (693)
Q Consensus 65 ~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~--~~~~~-----------~~iliTtr~~~~ 130 (693)
.-+++++.. ......+..+++..+... ..++.-++|||+++... ....+ .-|++||....+
T Consensus 93 pDviEIdAa-----s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 93 VDYIEMDAA-----SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred CcceEeccc-----ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 011122111 001111112222221111 24556699999999773 23333 335666666666
Q ss_pred hhhcCCce--EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHH
Q 042597 131 CDQMDAEK--LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTV 189 (693)
Q Consensus 131 ~~~~~~~~--~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~ 189 (693)
.....++. +.+..++.++..+.+.+.+...+...+ .+..+.|++.++|.|.-...+
T Consensus 168 lpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d---~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 168 PVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE---VNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 54444444 899999999999998887765432222 466789999999999654443
No 67
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.57 E-value=1.7e-08 Score=95.31 Aligned_cols=133 Identities=23% Similarity=0.347 Sum_probs=109.4
Q ss_pred cccccccceeeeccccchhhc-cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccE
Q 042597 335 VQEWEGAKRVSLMDNRILRLL-EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHH 413 (693)
Q Consensus 335 ~~~~~~l~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~ 413 (693)
...|..++.+++++|.+..+. +..-.+++|.|+++.|.+..+.. +..+.+|..||||+| .+.++-..=.++-|+++
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccc-hhHhhhhhHhhhcCEee
Confidence 346778889999999998886 46667999999999999887765 678999999999999 66666555557889999
Q ss_pred EeeCCCCCCccChhhhcCCCCcEeccCCccccccccc-ccccCCCccccccccccCCCcc
Q 042597 414 LDLSSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPH-KLKSGFSKLEALRLLECGSGGV 472 (693)
Q Consensus 414 L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~-~~~~~l~~L~~L~l~~~~~~~~ 472 (693)
|.|++|.++++. +++++.+|.+||+++| .+..+.. .-+++++-|+++.+.+|.+...
T Consensus 357 L~La~N~iE~LS-GL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 357 LKLAQNKIETLS-GLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred eehhhhhHhhhh-hhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 999999999885 7899999999999998 6665541 1168999999999999886654
No 68
>PF14516 AAA_35: AAA-like domain
Probab=98.56 E-value=1.2e-05 Score=82.47 Aligned_cols=179 Identities=16% Similarity=0.207 Sum_probs=110.6
Q ss_pred ecCCC-CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCc-----
Q 042597 5 ELPVD-HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDD----- 78 (693)
Q Consensus 5 ~~p~~-~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~----- 78 (693)
++|.+ +..|.|...-+++.+.+.. ....+.|.|+..+|||++..++.++. +. .. ..++++++......
T Consensus 5 ~~~~~~~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l-~~-~~-~~~v~id~~~~~~~~~~~~ 78 (331)
T PF14516_consen 5 PLPLDSPFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERL-QQ-QG-YRCVYIDLQQLGSAIFSDL 78 (331)
T ss_pred CCCCCCCcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHH-HH-CC-CEEEEEEeecCCCcccCCH
Confidence 34444 5567888677777777755 24789999999999999999999987 32 23 34557777222110
Q ss_pred ----------------------hhhhh--hchhHHHHHHHHHH---ccCcEEEEEeCcccccch----hhh---------
Q 042597 79 ----------------------KKWKE--KSLQDKAADISSIL---SRKKFVLLLDDIWERIDL----KEL--------- 118 (693)
Q Consensus 79 ----------------------~~~~~--~~~~~~~~~l~~~l---~~~~~LlvlDdv~~~~~~----~~~--------- 118 (693)
..+.. .........+.+.+ .+++++++||+|+..-.. .++
T Consensus 79 ~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~ 158 (331)
T PF14516_consen 79 EQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYE 158 (331)
T ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHH
Confidence 00000 01112222233322 258999999999855321 122
Q ss_pred -----------hhhhhcccchhhhhh-----cCCc-eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCC
Q 042597 119 -----------VSLFLTTRSVDVCDQ-----MDAE-KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSG 181 (693)
Q Consensus 119 -----------~~iliTtr~~~~~~~-----~~~~-~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G 181 (693)
.-|++.+........ +... .+++++|+.+|...|+.++-..-. ....++|...++|
T Consensus 159 ~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~~-------~~~~~~l~~~tgG 231 (331)
T PF14516_consen 159 QRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEFS-------QEQLEQLMDWTGG 231 (331)
T ss_pred hcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccCC-------HHHHHHHHHHHCC
Confidence 112222211111111 1222 289999999999999887643322 3449999999999
Q ss_pred cchHHHHHHHHHhcC
Q 042597 182 LPLALKTVGRAMKSQ 196 (693)
Q Consensus 182 ~Plal~~~~~~l~~~ 196 (693)
||..+..++..+...
T Consensus 232 hP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 232 HPYLVQKACYLLVEE 246 (331)
T ss_pred CHHHHHHHHHHHHHc
Confidence 999999999998763
No 69
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.56 E-value=4.8e-09 Score=107.49 Aligned_cols=207 Identities=20% Similarity=0.197 Sum_probs=138.0
Q ss_pred eeeccccchhhcc---CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCCC
Q 042597 344 VSLMDNRILRLLE---IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTN 420 (693)
Q Consensus 344 l~l~~~~~~~~~~---~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 420 (693)
+.+.+-++..+|- -..+..-...+++.|.+..+|.+ +..+..|..+.|..| .+..+|..+.++..|.+|||+.|+
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~-~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEE-ACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccccCchH-HHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccch
Confidence 3444444444431 13345556678888888888877 788888999988888 778888889999999999999999
Q ss_pred CCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCcee
Q 042597 421 ITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNVL 500 (693)
Q Consensus 421 i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l 500 (693)
++.+|..++.|+ |+.|-+++| ++..+|.+ ++.+..|.+|+.+.|.+. .....+..|.+|+.+
T Consensus 133 lS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~-ig~~~tl~~ld~s~nei~---------------slpsql~~l~slr~l 194 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSNN-KLTSLPEE-IGLLPTLAHLDVSKNEIQ---------------SLPSQLGYLTSLRDL 194 (722)
T ss_pred hhcCChhhhcCc-ceeEEEecC-ccccCCcc-cccchhHHHhhhhhhhhh---------------hchHHhhhHHHHHHH
Confidence 999998888776 888888888 88888888 578888999998888643 345556666666666
Q ss_pred EEEeechhhHh-hhhccchhhhhhcccccceeEeccccccc-cccccccCCccEEEEeccccccchhh----hhcCCccE
Q 042597 501 SWSFRSSLAVQ-KFFKYPKLELELENTNLEEMKIDSTEEVK-KRFRSGFRSLNTVRVNGCKVKDLTWL----VFVQNLKE 574 (693)
Q Consensus 501 ~~~~~~~~~~~-~~~~~~~l~~~l~~~~L~~L~i~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~l----~~l~~L~~ 574 (693)
.+.-+....+. ++..+ .|..|+++++.... +..+..+..|+.|-|.+|.++.+|.- +...=.++
T Consensus 195 ~vrRn~l~~lp~El~~L----------pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKy 264 (722)
T KOG0532|consen 195 NVRRNHLEDLPEELCSL----------PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKY 264 (722)
T ss_pred HHhhhhhhhCCHHHhCC----------ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeee
Confidence 65544433222 22222 23334444333322 12335677788888888877776622 22333566
Q ss_pred EEEecc
Q 042597 575 LEISFC 580 (693)
Q Consensus 575 L~l~~~ 580 (693)
|++..|
T Consensus 265 L~~qA~ 270 (722)
T KOG0532|consen 265 LSTQAC 270 (722)
T ss_pred ecchhc
Confidence 666665
No 70
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.55 E-value=1.3e-06 Score=84.93 Aligned_cols=162 Identities=14% Similarity=0.128 Sum_probs=95.6
Q ss_pred Cccc-chHHHH-HHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchh
Q 042597 10 HTVV-GQELLL-YRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQ 87 (693)
Q Consensus 10 ~~~v-Gr~~~~-~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~ 87 (693)
+.|+ |..+.. ..+.++... ......+.|+|++|+|||+||+.+++.. .. .. ....+++......
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~-~~~~~~~~l~G~~G~GKT~La~ai~~~~-~~-~~-~~~~~i~~~~~~~---------- 83 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAG-PVADRFFYLWGEAGSGRSHLLQALVADA-SY-GG-RNARYLDAASPLL---------- 83 (227)
T ss_pred cccccCCcHHHHHHHHHHHhc-cCCCCeEEEECCCCCCHHHHHHHHHHHH-Hh-CC-CcEEEEehHHhHH----------
Confidence 3445 554433 444444432 2345788999999999999999999976 21 12 2344554422110
Q ss_pred HHHHHHHHHHccCcEEEEEeCcccccchh--hh----------hh--hhhcccchhh--------hhhcCC-ceEEeccC
Q 042597 88 DKAADISSILSRKKFVLLLDDIWERIDLK--EL----------VS--LFLTTRSVDV--------CDQMDA-EKLEVYSL 144 (693)
Q Consensus 88 ~~~~~l~~~l~~~~~LlvlDdv~~~~~~~--~~----------~~--iliTtr~~~~--------~~~~~~-~~~~l~~l 144 (693)
. + ... ...-++|+||++...... .+ .+ +++|++.... ..++.. ..++++++
T Consensus 84 -~---~-~~~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl 157 (227)
T PRK08903 84 -A---F-DFD-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPL 157 (227)
T ss_pred -H---H-hhc-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCC
Confidence 0 0 111 223478899998553221 12 22 5555554321 112222 34899999
Q ss_pred CchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHHHh
Q 042597 145 ANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRAMK 194 (693)
Q Consensus 145 ~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~l~ 194 (693)
++++-..++.+.+...+...+ +++.+.+++.+.|++..+..+...+.
T Consensus 158 ~~~~~~~~l~~~~~~~~v~l~---~~al~~L~~~~~gn~~~l~~~l~~l~ 204 (227)
T PRK08903 158 SDADKIAALKAAAAERGLQLA---DEVPDYLLTHFRRDMPSLMALLDALD 204 (227)
T ss_pred CHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 999877777766544443332 67888999999999988877766543
No 71
>PRK09087 hypothetical protein; Validated
Probab=98.55 E-value=2.2e-06 Score=82.36 Aligned_cols=133 Identities=18% Similarity=0.182 Sum_probs=86.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHccCcEEEEEeCccc
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILSRKKFVLLLDDIWE 111 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~ 111 (693)
..+.+.|+|++|+|||+|++..+... . ..+++.... .......+.+ -++++||++.
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~---~-----~~~i~~~~~--------------~~~~~~~~~~--~~l~iDDi~~ 98 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKS---D-----ALLIHPNEI--------------GSDAANAAAE--GPVLIEDIDA 98 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhc---C-----CEEecHHHc--------------chHHHHhhhc--CeEEEECCCC
Confidence 45679999999999999999888764 1 123332111 1111111111 2788899975
Q ss_pred cc-chhhh-----------hhhhhcccc---------hhhhhhcCCce-EEeccCCchHHHHHHHHHhhcccCCCCCChH
Q 042597 112 RI-DLKEL-----------VSLFLTTRS---------VDVCDQMDAEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTSIP 169 (693)
Q Consensus 112 ~~-~~~~~-----------~~iliTtr~---------~~~~~~~~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~ 169 (693)
.. +-..+ ..||+|++. +++..++.... +++.+++.++-.+++++++...+...+ +
T Consensus 99 ~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~---~ 175 (226)
T PRK09087 99 GGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVD---P 175 (226)
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCC---H
Confidence 42 11222 457787763 23344444444 999999999999999999877654433 7
Q ss_pred HHHHHHHHHhCCcchHHHHHHH
Q 042597 170 ELAETLARECSGLPLALKTVGR 191 (693)
Q Consensus 170 ~~~~~I~~~~~G~Plal~~~~~ 191 (693)
+..+-|++.+.|...++..+..
T Consensus 176 ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 176 HVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred HHHHHHHHHhhhhHHHHHHHHH
Confidence 8888999999888776665433
No 72
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.54 E-value=1e-06 Score=94.06 Aligned_cols=173 Identities=17% Similarity=0.226 Sum_probs=105.1
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCC----------CE---EEE-----EE
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNF----------DV---VIW-----AA 71 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f----------~~---~~w-----v~ 71 (693)
..+||.+..+..+...+... .-.+.+.++|++|+||||+|+.+++.. ...... .| ..+ .+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~L-nc~~~~~~~~~~~~C~~C~~C~~i~~~~h~D 98 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAV-NCSALITENTTIKTCEQCTNCISFNNHNHPD 98 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHh-cCccccccCcCcCCCCCChHHHHHhcCCCCc
Confidence 66899999999888877662 224678999999999999999999977 221110 00 000 01
Q ss_pred EeccCCchhhhhhchhHHHHHHHH-HHccCcEEEEEeCccccc--chhhh----------hh-hhhcccchhhhhhcCCc
Q 042597 72 VIGFSDDKKWKEKSLQDKAADISS-ILSRKKFVLLLDDIWERI--DLKEL----------VS-LFLTTRSVDVCDQMDAE 137 (693)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~--~~~~~----------~~-iliTtr~~~~~~~~~~~ 137 (693)
+.+..........+..+.+..... -..+++-++|+|+++... .+..+ .. |++||+...+.......
T Consensus 99 v~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SR 178 (507)
T PRK06645 99 IIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISR 178 (507)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhc
Confidence 111111011111112222221111 123566789999998763 34444 23 44566665554433332
Q ss_pred --eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHH
Q 042597 138 --KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALK 187 (693)
Q Consensus 138 --~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~ 187 (693)
.+++.+++.++..+.+.+.+...+...+ .+.+..|++.++|.+.-+.
T Consensus 179 c~~~ef~~ls~~el~~~L~~i~~~egi~ie---~eAL~~Ia~~s~GslR~al 227 (507)
T PRK06645 179 CQRYDLRRLSFEEIFKLLEYITKQENLKTD---IEALRIIAYKSEGSARDAV 227 (507)
T ss_pred ceEEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 3899999999999999988876543222 5778889999999875443
No 73
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.53 E-value=8.5e-07 Score=96.28 Aligned_cols=175 Identities=15% Similarity=0.196 Sum_probs=104.4
Q ss_pred CcccchHHHHHHHHHHhhhcCCC-eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCC------E--------EEEEEEec
Q 042597 10 HTVVGQELLLYRVWRCITDQEKN-RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFD------V--------VIWAAVIG 74 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~-~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~------~--------~~wv~~~~ 74 (693)
+.+||.+..+..|..++.. ++ .+.+.++|+.|+||||+|+.+++.+ ....... | -.++++.+
T Consensus 16 ddIIGQe~vv~~L~~ai~~--~rl~Ha~Lf~GP~GvGKTTlAriLAk~L-nC~~~~~~~pCg~C~sCr~i~~g~~~DvlE 92 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDE--GRLHHAYLLTGTRGVGKTTIARILAKSL-NCENAQHGEPCGVCQSCTQIDAGRYVDLLE 92 (709)
T ss_pred HHHcCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCcHHHHHHHHHHHh-cccCCCCCCCCcccHHHHHHhccCccceEE
Confidence 6799999999999999886 44 3568999999999999999998875 2111110 0 00111111
Q ss_pred cCCchhhhhhchhHHHHHHHH-HHccCcEEEEEeCcccccc--hhhh----------hhhhhccc-chhhhhhcCCce--
Q 042597 75 FSDDKKWKEKSLQDKAADISS-ILSRKKFVLLLDDIWERID--LKEL----------VSLFLTTR-SVDVCDQMDAEK-- 138 (693)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~~--~~~~----------~~iliTtr-~~~~~~~~~~~~-- 138 (693)
.............+.+..... -..+++-++|||+++.... ...+ .++|++|. ...+........
T Consensus 93 idaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~ 172 (709)
T PRK08691 93 IDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQ 172 (709)
T ss_pred EeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhh
Confidence 111000111112222221111 0235666899999987643 2222 34555544 333332222222
Q ss_pred EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHH
Q 042597 139 LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVG 190 (693)
Q Consensus 139 ~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~ 190 (693)
+.+.+++.++....+.+.+...+...+ ...+..|++.++|.+.-+..+.
T Consensus 173 f~f~~Ls~eeI~~~L~~Il~kEgi~id---~eAL~~Ia~~A~GslRdAlnLL 221 (709)
T PRK08691 173 FVLRNMTAQQVADHLAHVLDSEKIAYE---PPALQLLGRAAAGSMRDALSLL 221 (709)
T ss_pred hhcCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHhCCCHHHHHHHH
Confidence 788899999999999988776543322 6788999999999885544433
No 74
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.52 E-value=1.5e-08 Score=100.29 Aligned_cols=281 Identities=18% Similarity=0.198 Sum_probs=152.7
Q ss_pred cccceeeeccccchhhcc----CCCCCccceeeccccc-ccccccccc-CCCCcccEEEccCCcchhhch-H-hhhcccc
Q 042597 339 EGAKRVSLMDNRILRLLE----IPTCSRLITLLLYENW-IEEITDGFF-QPMSSLRVLALGRNFFLSKLR-S-GIANLVS 410 (693)
Q Consensus 339 ~~l~~l~l~~~~~~~~~~----~~~~~~L~~L~l~~~~-l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~p-~-~~~~l~~ 410 (693)
.-++.+++.+++-..... -.+|++++.|.+.+|. ++......+ ..+++|++|++..|..++... . ....+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 346667777776554432 3568888888888883 433222112 458889999999876665432 2 3456889
Q ss_pred ccEEeeCCC-CCCc--cChhhhcCCCCcEeccCCcccccccccccc----cCCCccccccccccCCCccccccCcccccC
Q 042597 411 LHHLDLSST-NITG--LPQDLKALEKLRYLNLDHAYKLSIIPHKLK----SGFSKLEALRLLECGSGGVIEEEGNVLCDD 483 (693)
Q Consensus 411 L~~L~l~~~-~i~~--lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 483 (693)
|+||++++| .|++ +..-..+..+++.+...+|.. .+.+.+ +.+.-+-.+++..|...+.
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e---~~le~l~~~~~~~~~i~~lnl~~c~~lTD----------- 283 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE---LELEALLKAAAYCLEILKLNLQHCNQLTD----------- 283 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhccccc---ccHHHHHHHhccChHhhccchhhhccccc-----------
Confidence 999999998 5665 433345566677776666632 221111 2334455555555543321
Q ss_pred cchhHHhhccCCCCceeEEEeechhhHhhhhccchhhhhhcccccceeEeccccccc----cccccccCCccEEEEeccc
Q 042597 484 AEPLMKELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDSTEEVK----KRFRSGFRSLNTVRVNGCK 559 (693)
Q Consensus 484 ~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~~~~~----~~~~~~~~~L~~L~l~~~~ 559 (693)
......-.....|+.+..+.+....-..+..+ .-...+|+.+.+..|.... ......++.|+.+++.+|.
T Consensus 284 -~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL-----g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 284 -EDLWLIACGCHALQVLCYSSCTDITDEVLWAL-----GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred -hHHHHHhhhhhHhhhhcccCCCCCchHHHHHH-----hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc
Confidence 11222233444555555554432211111111 1112567777777665432 1122456777777777773
Q ss_pred ccc---chh-hhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeeccccccccccc-cCCCCCCCcc
Q 042597 560 VKD---LTW-LVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIY-PNPLPFPKLK 634 (693)
Q Consensus 560 l~~---~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~~~~~~~~L~ 634 (693)
+.. +.. -.+++.|+.|.++.|...++... ..+. ...-....|..|.+.+|+.+.+-. .....+++|+
T Consensus 358 ~~~d~tL~sls~~C~~lr~lslshce~itD~gi-~~l~-------~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Le 429 (483)
T KOG4341|consen 358 LITDGTLASLSRNCPRLRVLSLSHCELITDEGI-RHLS-------SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLE 429 (483)
T ss_pred eehhhhHhhhccCCchhccCChhhhhhhhhhhh-hhhh-------hccccccccceeeecCCCCchHHHHHHHhhCcccc
Confidence 322 111 22367788887777765554311 0000 123345667777777777654432 2334567777
Q ss_pred EEEEccCCCCCCc
Q 042597 635 KIQVLHCPELKKL 647 (693)
Q Consensus 635 ~L~l~~c~~L~~l 647 (693)
.+++.+|....+=
T Consensus 430 ri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 430 RIELIDCQDVTKE 442 (483)
T ss_pred eeeeechhhhhhh
Confidence 7777777666553
No 75
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=1e-06 Score=94.66 Aligned_cols=166 Identities=17% Similarity=0.203 Sum_probs=101.2
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCC--------------------CCEEEE
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHN--------------------FDVVIW 69 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~--------------------f~~~~w 69 (693)
..++|++..++.+..++... .-.+.+.++|++|+||||+|+.+++.. ...+. .+ +++
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L-~C~~~~~~~~Cg~C~sCr~i~~~~h~D-iie 92 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAI-NCLNPKDGDCCNSCSVCESINTNQSVD-IVE 92 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHh-cCCCCCCCCCCcccHHHHHHHcCCCCc-eEE
Confidence 67999999999999988662 223578899999999999999999876 22111 11 122
Q ss_pred EEEeccCCchhhhhhchhHHHHHHHHH-HccCcEEEEEeCccccc--chhhh-----------hhhhhcccchhhhhhcC
Q 042597 70 AAVIGFSDDKKWKEKSLQDKAADISSI-LSRKKFVLLLDDIWERI--DLKEL-----------VSLFLTTRSVDVCDQMD 135 (693)
Q Consensus 70 v~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~--~~~~~-----------~~iliTtr~~~~~~~~~ 135 (693)
++... .............+... ..+++=++|+|+++... ....+ .-|++|+....+.....
T Consensus 93 Idaas-----~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~ 167 (605)
T PRK05896 93 LDAAS-----NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTII 167 (605)
T ss_pred ecccc-----ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHH
Confidence 21110 01111112222211110 12333469999998753 23333 23445655555543322
Q ss_pred C--ceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHH
Q 042597 136 A--EKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLAL 186 (693)
Q Consensus 136 ~--~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal 186 (693)
. ..+++.+++.++....+.+.+...+...+ .+.+..+++.++|.+.-+
T Consensus 168 SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is---~eal~~La~lS~GdlR~A 217 (605)
T PRK05896 168 SRCQRYNFKKLNNSELQELLKSIAKKEKIKIE---DNAIDKIADLADGSLRDG 217 (605)
T ss_pred hhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHH
Confidence 2 23899999999999999887765442222 577889999999977533
No 76
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.52 E-value=1.4e-06 Score=89.69 Aligned_cols=170 Identities=13% Similarity=0.176 Sum_probs=102.0
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHH
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDK 89 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~ 89 (693)
+.++|+++.++.+..++.. ...+.+.++|++|+||||+|+.+++.. ... .+.. .++.+..... . ......+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~--~~~~~~ll~G~~G~GKt~~~~~l~~~l-~~~-~~~~-~~i~~~~~~~-~--~~~~~~~~ 88 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKE--KNMPHLLFAGPPGTGKTTAALALAREL-YGE-DWRE-NFLELNASDE-R--GIDVIRNK 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHH-cCC-cccc-ceEEeccccc-c--chHHHHHH
Confidence 5689999999999999876 445568999999999999999999986 211 1211 1222211000 0 00011111
Q ss_pred HHHHHHHH---ccCcEEEEEeCcccccc--hhhh----------hhhhhcccc-hhhhhhc--CCceEEeccCCchHHHH
Q 042597 90 AADISSIL---SRKKFVLLLDDIWERID--LKEL----------VSLFLTTRS-VDVCDQM--DAEKLEVYSLANDEAWK 151 (693)
Q Consensus 90 ~~~l~~~l---~~~~~LlvlDdv~~~~~--~~~~----------~~iliTtr~-~~~~~~~--~~~~~~l~~l~~~e~~~ 151 (693)
+..+.... ...+-++++|+++.... ...+ ..+|+++.. ..+.... ....+++.+++.++...
T Consensus 89 i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~ 168 (319)
T PRK00440 89 IKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAE 168 (319)
T ss_pred HHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHH
Confidence 11221111 13456899999976532 2222 445555532 2222211 11238999999999999
Q ss_pred HHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHH
Q 042597 152 LFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVG 190 (693)
Q Consensus 152 l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~ 190 (693)
++.+.+...+..-+ ++.++.+++.++|.+.-+....
T Consensus 169 ~l~~~~~~~~~~i~---~~al~~l~~~~~gd~r~~~~~l 204 (319)
T PRK00440 169 RLRYIAENEGIEIT---DDALEAIYYVSEGDMRKAINAL 204 (319)
T ss_pred HHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 99888765543222 6788999999999886544333
No 77
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.51 E-value=8.7e-07 Score=96.68 Aligned_cols=169 Identities=18% Similarity=0.188 Sum_probs=106.4
Q ss_pred CcccchHHHHHHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhccccC--------------------CCCEEE
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCHQQH--------------------NFDVVI 68 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~~~~--------------------~f~~~~ 68 (693)
+.+||.+..+..|...+.. ++. +...++|+.|+||||+|+.+++.. .... +.| .+
T Consensus 16 ~divGQe~vv~~L~~~l~~--~rl~hAyLf~Gp~GvGKTTlAr~lAk~L-~c~~~~~~~pCg~C~~C~~i~~g~~~D-~i 91 (647)
T PRK07994 16 AEVVGQEHVLTALANALDL--GRLHHAYLFSGTRGVGKTTIARLLAKGL-NCETGITATPCGECDNCREIEQGRFVD-LI 91 (647)
T ss_pred HHhcCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHhh-hhccCCCCCCCCCCHHHHHHHcCCCCC-ce
Confidence 6799999999999998876 444 456899999999999999999877 2211 111 11
Q ss_pred EEEEeccCCchhhhhhchhHHHHHHHHH-HccCcEEEEEeCccccc--chhhh-----------hhhhhcccchhhhhhc
Q 042597 69 WAAVIGFSDDKKWKEKSLQDKAADISSI-LSRKKFVLLLDDIWERI--DLKEL-----------VSLFLTTRSVDVCDQM 134 (693)
Q Consensus 69 wv~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~--~~~~~-----------~~iliTtr~~~~~~~~ 134 (693)
.++.. ......+..+++..+... ..+++-++|||+++... ....+ .-|++||....+....
T Consensus 92 eidaa-----s~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 92 EIDAA-----SRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred eeccc-----ccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHH
Confidence 12111 001111122222222211 24666799999999774 23333 2345566555554333
Q ss_pred CCce--EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHH
Q 042597 135 DAEK--LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVG 190 (693)
Q Consensus 135 ~~~~--~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~ 190 (693)
.++. +.+.+++.++..+.+.+.+...+... -......|++.++|.+.-+..+.
T Consensus 167 ~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~---e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 167 LSRCLQFHLKALDVEQIRQQLEHILQAEQIPF---EPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred HhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 3333 99999999999999988765443222 25677899999999886444443
No 78
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.51 E-value=3.4e-08 Score=93.34 Aligned_cols=131 Identities=17% Similarity=0.216 Sum_probs=82.4
Q ss_pred ccccccccceeeeccccchhhccC-CCCCccceeecccccccccc---c--------------------cccCCCCcccE
Q 042597 334 KVQEWEGAKRVSLMDNRILRLLEI-PTCSRLITLLLYENWIEEIT---D--------------------GFFQPMSSLRV 389 (693)
Q Consensus 334 ~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~---~--------------------~~~~~l~~L~~ 389 (693)
....+.+++.+.++.++...+-++ ..-+.|.++......++..+ | ..+..-+.|..
T Consensus 209 ~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lte 288 (490)
T KOG1259|consen 209 NLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTE 288 (490)
T ss_pred chHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhh
Confidence 344456666666666655554432 22345555555544322211 0 00123456778
Q ss_pred EEccCCcchhhchHhhhccccccEEeeCCCCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccC
Q 042597 390 LALGRNFFLSKLRSGIANLVSLHHLDLSSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECG 468 (693)
Q Consensus 390 L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~ 468 (693)
+|||+| .++.+-+++.-.+.++.|++|+|.+..+.. +..+++|++||+++| .+..+..+ -..+.+.++|.+.+|.
T Consensus 289 lDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gw-h~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 289 LDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGW-HLKLGNIKTLKLAQNK 363 (490)
T ss_pred cccccc-chhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhh-HhhhcCEeeeehhhhh
Confidence 888888 777777777777888888888888777764 777888888888887 66666544 3567788888887774
No 79
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=3.1e-06 Score=90.15 Aligned_cols=169 Identities=18% Similarity=0.226 Sum_probs=102.4
Q ss_pred CcccchHHHHHHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhccccCC--C-----------------CEEEE
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCHQQHN--F-----------------DVVIW 69 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~~~~~--f-----------------~~~~w 69 (693)
+.+||.+.....+...+.. ++. +.+.++|++|+||||+|+.+++.. ..... + ..++.
T Consensus 14 ~divGq~~i~~~L~~~i~~--~~l~~~~Lf~GPpGtGKTTlA~~lA~~l-~~~~~~~~~pc~~c~~c~~i~~g~~~dv~e 90 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKK--NSISHAYIFAGPRGTGKTTVARILAKSL-NCENRKGVEPCNECRACRSIDEGTFMDVIE 90 (472)
T ss_pred HHccCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHh-ccccCCCCCCCcccHHHHHHhcCCCCccEE
Confidence 6799999988888887765 444 568999999999999999999876 22111 0 01112
Q ss_pred EEEeccCCchhhhhhchhHHHHHHHHH-----HccCcEEEEEeCccccc--chhhh----------hh-hhhcccchhhh
Q 042597 70 AAVIGFSDDKKWKEKSLQDKAADISSI-----LSRKKFVLLLDDIWERI--DLKEL----------VS-LFLTTRSVDVC 131 (693)
Q Consensus 70 v~~~~~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlvlDdv~~~~--~~~~~----------~~-iliTtr~~~~~ 131 (693)
++... ....++. ..+.+. ..+++-++|+|+++... ....+ .. |+.||....+.
T Consensus 91 l~aa~--------~~gid~i-R~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~ 161 (472)
T PRK14962 91 LDAAS--------NRGIDEI-RKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVP 161 (472)
T ss_pred EeCcc--------cCCHHHH-HHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhh
Confidence 21110 0111111 122222 23456699999998653 22333 22 33455434443
Q ss_pred hhcCCc--eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCc-chHHHHHHHHH
Q 042597 132 DQMDAE--KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGL-PLALKTVGRAM 193 (693)
Q Consensus 132 ~~~~~~--~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~-Plal~~~~~~l 193 (693)
...... .+.+.+++.++....+.+.+...+..-+ +++++.|++.++|. +.++..+-.+.
T Consensus 162 ~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~---~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 162 PTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID---REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred HHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 333322 3899999999999999888765443222 67788999988654 56666665433
No 80
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=1.7e-06 Score=92.95 Aligned_cols=171 Identities=17% Similarity=0.166 Sum_probs=105.4
Q ss_pred CcccchHHHHHHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhccccC------------------CCCEEEEE
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCHQQH------------------NFDVVIWA 70 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~~~~------------------~f~~~~wv 70 (693)
+.+||.+..++.+...+.. ++. +.+.++|++|+||||+|+.+++....... .|.-.+++
T Consensus 16 ~diiGq~~~v~~L~~~i~~--~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dliei 93 (546)
T PRK14957 16 AEVAGQQHALNSLVHALET--QKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEI 93 (546)
T ss_pred HHhcCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEe
Confidence 6799999999999998876 333 55789999999999999999986621100 11122222
Q ss_pred EEeccCCchhhhhhchhHHHHHHHHH-HccCcEEEEEeCcccccc--hhhh----------hh-hhhcccchhhhhhcCC
Q 042597 71 AVIGFSDDKKWKEKSLQDKAADISSI-LSRKKFVLLLDDIWERID--LKEL----------VS-LFLTTRSVDVCDQMDA 136 (693)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~--~~~~----------~~-iliTtr~~~~~~~~~~ 136 (693)
+.... ....+..+.+..+... ..+++-++|+||++.... ...+ .. |++||....+......
T Consensus 94 daas~-----~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~S 168 (546)
T PRK14957 94 DAASR-----TGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILS 168 (546)
T ss_pred ecccc-----cCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHH
Confidence 22111 1111122222222211 245667999999986643 3333 33 4456555444433333
Q ss_pred ce--EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcch-HHHHHH
Q 042597 137 EK--LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPL-ALKTVG 190 (693)
Q Consensus 137 ~~--~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-al~~~~ 190 (693)
+. +++.+++.++..+.+.+.+...+... -....+.|++.++|.+. |+..+-
T Consensus 169 Rc~~~~f~~Ls~~eI~~~L~~il~~egi~~---e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 169 RCIQLHLKHISQADIKDQLKIILAKENINS---DEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred heeeEEeCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33 89999999999998888766544222 26778899999999774 444443
No 81
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=1.1e-06 Score=94.67 Aligned_cols=174 Identities=16% Similarity=0.163 Sum_probs=103.9
Q ss_pred CcccchHHHHHHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhccccCCCC------E--------EEEEEEec
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCHQQHNFD------V--------VIWAAVIG 74 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~------~--------~~wv~~~~ 74 (693)
+.+||.+..++.|..++.. ++. +...++|++|+||||+|+.+++.. ......+ | --+.++.+
T Consensus 16 ~divGq~~v~~~L~~~~~~--~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l-~c~~~~~~~pCg~C~~C~~i~~g~~~d~~e 92 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQ--QYLHHAYLFTGTRGVGKTTISRILAKCL-NCEKGVSANPCNDCENCREIDEGRFPDLFE 92 (509)
T ss_pred HHhcCCHHHHHHHHHHHHh--CCCCeeEEEECCCCCCHHHHHHHHHHHh-cCCCCCCcccCCCCHHHHHHhcCCCceEEE
Confidence 6799999999999999976 444 456899999999999999999977 2221111 0 00111111
Q ss_pred cCCchhhhhhchhHHHHHHHH-HHccCcEEEEEeCccccc--chhhh----------hh-hhhcccchhhhhhcCCce--
Q 042597 75 FSDDKKWKEKSLQDKAADISS-ILSRKKFVLLLDDIWERI--DLKEL----------VS-LFLTTRSVDVCDQMDAEK-- 138 (693)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~--~~~~~----------~~-iliTtr~~~~~~~~~~~~-- 138 (693)
..........+..+....+.. -..++.-++|||+|+... ....+ .+ |++||....+........
T Consensus 93 idaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~ 172 (509)
T PRK14958 93 VDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQ 172 (509)
T ss_pred EcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhh
Confidence 111011111111222222111 113455689999999763 23333 33 445555444443333222
Q ss_pred EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHH
Q 042597 139 LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTV 189 (693)
Q Consensus 139 ~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~ 189 (693)
+++.+++.++....+.+.+...+.... ......|++.++|.+.-+...
T Consensus 173 ~~f~~l~~~~i~~~l~~il~~egi~~~---~~al~~ia~~s~GslR~al~l 220 (509)
T PRK14958 173 FHLAQLPPLQIAAHCQHLLKEENVEFE---NAALDLLARAANGSVRDALSL 220 (509)
T ss_pred hhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHH
Confidence 889999999999888887765543222 567889999999988544433
No 82
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=1.5e-06 Score=91.92 Aligned_cols=166 Identities=18% Similarity=0.208 Sum_probs=103.8
Q ss_pred CcccchHHHHHHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhcccc--------------------CCCCEEE
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCHQQ--------------------HNFDVVI 68 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~~~--------------------~~f~~~~ 68 (693)
+.+||.+..++.+...+.. ++. +...++|+.|+||||+|+.+++.. ... .+.+ ++
T Consensus 13 ~dliGQe~vv~~L~~a~~~--~ri~ha~Lf~Gp~G~GKTT~ArilAk~L-nC~~~~~~~pCg~C~~C~~i~~~~~~D-v~ 88 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTL--NKIPQSILLVGASGVGKTTCARIISLCL-NCSNGPTSDPCGTCHNCISIKNSNHPD-VI 88 (491)
T ss_pred HHhcCcHHHHHHHHHHHHc--CCCCceEEEECCCCccHHHHHHHHHHHH-cCcCCCCCCCccccHHHHHHhccCCCC-EE
Confidence 6799999999988888876 444 578999999999999999998754 111 1222 22
Q ss_pred EEEEeccCCchhhhhhchhHHHHHHHHH-HccCcEEEEEeCcccccc--hhhh----------hh-hhhcccchhhhhhc
Q 042597 69 WAAVIGFSDDKKWKEKSLQDKAADISSI-LSRKKFVLLLDDIWERID--LKEL----------VS-LFLTTRSVDVCDQM 134 (693)
Q Consensus 69 wv~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~--~~~~----------~~-iliTtr~~~~~~~~ 134 (693)
.++.... ....+..+.+...... ..++.=++|+|+++.... ...+ .+ |++||....+....
T Consensus 89 eidaas~-----~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI 163 (491)
T PRK14964 89 EIDAASN-----TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTI 163 (491)
T ss_pred EEecccC-----CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHH
Confidence 2222111 1111111222111110 134555899999986643 3333 23 44555555554443
Q ss_pred CCce--EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHH
Q 042597 135 DAEK--LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALK 187 (693)
Q Consensus 135 ~~~~--~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~ 187 (693)
.... +.+.+++.++..+.+.+.+...+..-+ ++.++.|++.++|.+..+.
T Consensus 164 ~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~---~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 164 ISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD---EESLKLIAENSSGSMRNAL 215 (491)
T ss_pred HHhheeeecccccHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 3333 899999999999999988776553322 6778899999999885443
No 83
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.47 E-value=1.5e-07 Score=69.98 Aligned_cols=59 Identities=34% Similarity=0.440 Sum_probs=36.3
Q ss_pred CccceeeccccccccccccccCCCCcccEEEccCCcchhhch-HhhhccccccEEeeCCCC
Q 042597 361 SRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLR-SGIANLVSLHHLDLSSTN 420 (693)
Q Consensus 361 ~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p-~~~~~l~~L~~L~l~~~~ 420 (693)
++|++|++.+|.++.++++.|..+++|++|++++| .+..++ ..|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35666666666666666666666666666666666 334333 345666666666666664
No 84
>PLN03150 hypothetical protein; Provisional
Probab=98.46 E-value=2.3e-07 Score=103.39 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=80.5
Q ss_pred ccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCCCCCc-cChhhhcCCCCcEeccC
Q 042597 362 RLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTNITG-LPQDLKALEKLRYLNLD 440 (693)
Q Consensus 362 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~ 440 (693)
.++.|+|.+|.+.+..+..++.+++|+.|+|++|.....+|..++.+++|+.|+|++|+++. +|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47778888888877666668888888888888885555788888888888888888888875 78788888888888888
Q ss_pred CcccccccccccccCCCccccccccccC
Q 042597 441 HAYKLSIIPHKLKSGFSKLEALRLLECG 468 (693)
Q Consensus 441 ~~~~l~~~p~~~~~~l~~L~~L~l~~~~ 468 (693)
+|.....+|..+.....++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 8866667777632223455666666554
No 85
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.46 E-value=1.9e-05 Score=83.97 Aligned_cols=158 Identities=14% Similarity=0.160 Sum_probs=96.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHccCcEEEEEeCcccc
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILSRKKFVLLLDDIWER 112 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~ 112 (693)
...+.|+|..|+|||.|++++++.. .....-..++++...++.......-.........+++..+ ..-++|+||++..
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l-~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~-~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYI-ESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEIC-QNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHH-HHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCCEEEEeccccc
Confidence 4568999999999999999999976 2223333456666533221100000000012223333333 2347889999755
Q ss_pred cc----hhhh-----------hhhhhcccch---------hhhhhcCCce-EEeccCCchHHHHHHHHHhhcccCCCCCC
Q 042597 113 ID----LKEL-----------VSLFLTTRSV---------DVCDQMDAEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTS 167 (693)
Q Consensus 113 ~~----~~~~-----------~~iliTtr~~---------~~~~~~~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~ 167 (693)
.. .+.+ ..||+|+... .+..++.++. +.+.+++.++..+++.+++...+.. ..-
T Consensus 219 ~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~-~~l 297 (450)
T PRK14087 219 SYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIK-QEV 297 (450)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCC-CCC
Confidence 31 1222 4577775532 2233344333 7899999999999999988654321 122
Q ss_pred hHHHHHHHHHHhCCcchHHHHHHHHH
Q 042597 168 IPELAETLARECSGLPLALKTVGRAM 193 (693)
Q Consensus 168 ~~~~~~~I~~~~~G~Plal~~~~~~l 193 (693)
-++.++-|++.++|.|..+..+...+
T Consensus 298 ~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 298 TEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred CHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 36888999999999998887766543
No 86
>PRK05642 DNA replication initiation factor; Validated
Probab=98.46 E-value=3.6e-06 Score=81.67 Aligned_cols=142 Identities=18% Similarity=0.270 Sum_probs=89.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHccCcEEEEEeCcccc
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILSRKKFVLLLDDIWER 112 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~ 112 (693)
...+.|+|+.|+|||.|++++++.. ...-..++|++..++.. . ...+.+.+++-. ++|+||++..
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~---~~~~~~v~y~~~~~~~~------~-----~~~~~~~~~~~d-~LiiDDi~~~ 109 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF---EQRGEPAVYLPLAELLD------R-----GPELLDNLEQYE-LVCLDDLDVI 109 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH---HhCCCcEEEeeHHHHHh------h-----hHHHHHhhhhCC-EEEEechhhh
Confidence 4678999999999999999999876 22234567776533221 0 122333333333 6788999743
Q ss_pred ---cchhh-h-----------hhhhhcccchh---------hhhhcCCce-EEeccCCchHHHHHHHHHhhcccCCCCCC
Q 042597 113 ---IDLKE-L-----------VSLFLTTRSVD---------VCDQMDAEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTS 167 (693)
Q Consensus 113 ---~~~~~-~-----------~~iliTtr~~~---------~~~~~~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~ 167 (693)
..|.. + ..+|+|++... +..++.... +++.+++.++-.+++++++...+...+
T Consensus 110 ~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~-- 187 (234)
T PRK05642 110 AGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLT-- 187 (234)
T ss_pred cCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCC--
Confidence 23322 2 45777776432 222333333 889999999999999876655443333
Q ss_pred hHHHHHHHHHHhCCcchHHHHHHHH
Q 042597 168 IPELAETLARECSGLPLALKTVGRA 192 (693)
Q Consensus 168 ~~~~~~~I~~~~~G~Plal~~~~~~ 192 (693)
++..+-|++++.|....+..+-..
T Consensus 188 -~ev~~~L~~~~~~d~r~l~~~l~~ 211 (234)
T PRK05642 188 -DEVGHFILTRGTRSMSALFDLLER 211 (234)
T ss_pred -HHHHHHHHHhcCCCHHHHHHHHHH
Confidence 678888888888776555544433
No 87
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=1.9e-06 Score=90.66 Aligned_cols=170 Identities=13% Similarity=0.173 Sum_probs=103.2
Q ss_pred CcccchHHHHHHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEE------------------
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWA------------------ 70 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv------------------ 70 (693)
+.++|.+...+.|..++.. ++. +.+.++|++|+||||+|..+++.. ..........|.
T Consensus 16 ~eiiGq~~~~~~L~~~~~~--~~~~ha~lf~Gp~G~GKtt~A~~~a~~l-~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~ 92 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRM--GRVGHGYIFSGLRGVGKTTAARVFAKAV-NCQRMIDDADYLQEVTEPCGECESCRDFDA 92 (397)
T ss_pred hhccChHHHHHHHHHHHHh--CCcceeEEEECCCCCCHHHHHHHHHHHh-cCCCCcCcccccccCCCCCCCCHHHHHHhc
Confidence 6799999999999988876 444 458899999999999999999877 221111000000
Q ss_pred ----EEeccCCchhhhhhchhHHHHHHHHHH-----ccCcEEEEEeCccccc--chhhh----------hhhh-hcccch
Q 042597 71 ----AVIGFSDDKKWKEKSLQDKAADISSIL-----SRKKFVLLLDDIWERI--DLKEL----------VSLF-LTTRSV 128 (693)
Q Consensus 71 ----~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~~----------~~il-iTtr~~ 128 (693)
++....... ....++. ..+.+.+ .+.+-++|+|+++... .+..+ ..+| +|++..
T Consensus 93 ~~~~n~~~~~~~~---~~~id~I-r~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 93 GTSLNISEFDAAS---NNSVDDI-RLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred CCCCCeEeecccc---cCCHHHH-HHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 000000000 0111222 1222333 3455688999998664 33333 3334 455544
Q ss_pred hhhhhcCCc--eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHH
Q 042597 129 DVCDQMDAE--KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTV 189 (693)
Q Consensus 129 ~~~~~~~~~--~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~ 189 (693)
.+....... .+++.+++.++..+.+.+.+...+...+ ++.++.|++.++|.+.-+...
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~---~~al~~l~~~s~g~lr~a~~~ 228 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVD---ADALQLIGRKAQGSMRDAQSI 228 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 444333222 2889999999999998887765442222 688899999999988544443
No 88
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.44 E-value=2e-06 Score=98.41 Aligned_cols=170 Identities=11% Similarity=0.114 Sum_probs=98.4
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCC---CCEEEE-EEEeccCCchhhhhhc
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHN---FDVVIW-AAVIGFSDDKKWKEKS 85 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~---f~~~~w-v~~~~~~~~~~~~~~~ 85 (693)
+++|||++++.++++.|.. .....+.++|++|+||||+|..++++....... ....+| +++..... .......
T Consensus 187 d~~iGr~~ei~~~i~~l~r--~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a-g~~~~ge 263 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLR--RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA-GASVKGE 263 (852)
T ss_pred CcccCCHHHHHHHHHHHhc--CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc-ccccchH
Confidence 6799999999999999877 445567799999999999999999987222111 122233 33322211 1111112
Q ss_pred hhHHHHHHHHHH--ccCcEEEEEeCccccc-------chh--hh---------hhhhhcccchhh--------hhhcCCc
Q 042597 86 LQDKAADISSIL--SRKKFVLLLDDIWERI-------DLK--EL---------VSLFLTTRSVDV--------CDQMDAE 137 (693)
Q Consensus 86 ~~~~~~~l~~~l--~~~~~LlvlDdv~~~~-------~~~--~~---------~~iliTtr~~~~--------~~~~~~~ 137 (693)
....+..+.+.+ .++++++++|+++... ..+ .+ -++|-||...+. +-.....
T Consensus 264 ~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~ 343 (852)
T TIGR03345 264 FENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTWAEYKKYFEKDPALTRRFQ 343 (852)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCHHHHhhhhhccHHHHHhCe
Confidence 222222222222 2478999999997652 111 12 345555554322 1111223
Q ss_pred eEEeccCCchHHHHHHHHHhhcccC-CCCCChHHHHHHHHHHhCCc
Q 042597 138 KLEVYSLANDEAWKLFQEMVDRSTL-GSHTSIPELAETLARECSGL 182 (693)
Q Consensus 138 ~~~l~~l~~~e~~~l~~~~~~~~~~-~~~~~~~~~~~~I~~~~~G~ 182 (693)
.+.+++++.+++.++++........ ..-.-..++...+++.+.+.
T Consensus 344 ~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 344 VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 4999999999999997554432111 11111256677777777643
No 89
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=1.9e-06 Score=93.91 Aligned_cols=170 Identities=15% Similarity=0.225 Sum_probs=102.8
Q ss_pred CcccchHHHHHHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhccccCC--CCEE-----------------EE
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCHQQHN--FDVV-----------------IW 69 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~~~~~--f~~~-----------------~w 69 (693)
+.+||.+..+..|..++.. ++. +...++|+.|+||||+|+.+++.. ...+. ..+. -+
T Consensus 16 ~dviGQe~vv~~L~~~l~~--~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L-nC~~~~~~~~~~~~pCg~C~~C~~i~~g~h 92 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQ--QRLHHAYLFTGTRGVGKTTVSRILAKSL-NCQGPDGQGGITATPCGVCQACRDIDSGRF 92 (618)
T ss_pred HHhcCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHh-cCCCcccccCCCCCCCCccHHHHHHHcCCC
Confidence 6799999999999998877 444 566899999999999999998776 21110 0000 00
Q ss_pred EEEeccCCchhhhhhchhHHHHHHHHHH-----ccCcEEEEEeCcccccc--hhhh----------hh-hhhcccchhhh
Q 042597 70 AAVIGFSDDKKWKEKSLQDKAADISSIL-----SRKKFVLLLDDIWERID--LKEL----------VS-LFLTTRSVDVC 131 (693)
Q Consensus 70 v~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~--~~~~----------~~-iliTtr~~~~~ 131 (693)
.++.+... ......++.. .+.+.. .++.-++|||+|+.... ...+ .+ |++||....+.
T Consensus 93 ~D~~elda---as~~~Vd~iR-eli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil 168 (618)
T PRK14951 93 VDYTELDA---ASNRGVDEVQ-QLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVP 168 (618)
T ss_pred CceeecCc---ccccCHHHHH-HHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhh
Confidence 01111111 0011111111 111221 23445889999997632 3333 23 44555544444
Q ss_pred hhcCCc--eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHH
Q 042597 132 DQMDAE--KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTV 189 (693)
Q Consensus 132 ~~~~~~--~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~ 189 (693)
...... .+++.+++.++..+.+.+.+...+...+ .+.++.|++.++|.+.-+..+
T Consensus 169 ~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie---~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 169 VTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE---PQALRLLARAARGSMRDALSL 225 (618)
T ss_pred HHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 333332 3899999999999999988766543322 577899999999988554443
No 90
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.40 E-value=2.8e-06 Score=81.33 Aligned_cols=175 Identities=11% Similarity=0.082 Sum_probs=111.2
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEE-EEEEEeccCCchhh--hhhch
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVV-IWAAVIGFSDDKKW--KEKSL 86 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~-~wv~~~~~~~~~~~--~~~~~ 86 (693)
+.++|.+..++-+.+.+.. ...++...|||+|.|||+-|..+++.. -..+-|.+. .-.++....+.... +..+.
T Consensus 36 de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L-~~~~~~~~rvl~lnaSderGisvvr~Kik~f 112 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARAL-NCEQLFPCRVLELNASDERGISVVREKIKNF 112 (346)
T ss_pred HhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHh-cCccccccchhhhcccccccccchhhhhcCH
Confidence 6789999999999999987 678999999999999999999999987 433334332 22333222111110 01111
Q ss_pred hHHHHHHHHHHcc---Cc-EEEEEeCcccc--cchhhhh-----------hhhhcccchhhhhhcCCce--EEeccCCch
Q 042597 87 QDKAADISSILSR---KK-FVLLLDDIWER--IDLKELV-----------SLFLTTRSVDVCDQMDAEK--LEVYSLAND 147 (693)
Q Consensus 87 ~~~~~~l~~~l~~---~~-~LlvlDdv~~~--~~~~~~~-----------~iliTtr~~~~~~~~~~~~--~~l~~l~~~ 147 (693)
........ ...+ .+ =.+|||+++.+ ..|.++. -|+||+--..+......+. ++.+++.++
T Consensus 113 akl~~~~~-~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~ 191 (346)
T KOG0989|consen 113 AKLTVLLK-RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDE 191 (346)
T ss_pred HHHhhccc-cccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchH
Confidence 11111010 0111 23 27889999966 4566661 2445555544444443333 899999999
Q ss_pred HHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHH
Q 042597 148 EAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGR 191 (693)
Q Consensus 148 e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~ 191 (693)
+..+-++..+...+...+ .++.+.|++.++|--.-+..+..
T Consensus 192 ~iv~rL~~Ia~~E~v~~d---~~al~~I~~~S~GdLR~Ait~Lq 232 (346)
T KOG0989|consen 192 DIVDRLEKIASKEGVDID---DDALKLIAKISDGDLRRAITTLQ 232 (346)
T ss_pred HHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 999999888877665544 68899999999986544443333
No 91
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.40 E-value=2.5e-07 Score=98.36 Aligned_cols=131 Identities=27% Similarity=0.329 Sum_probs=109.5
Q ss_pred cccccccceeeeccccchhhccCCCCC--ccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhcccccc
Q 042597 335 VQEWEGAKRVSLMDNRILRLLEIPTCS--RLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLH 412 (693)
Q Consensus 335 ~~~~~~l~~l~l~~~~~~~~~~~~~~~--~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~ 412 (693)
......++.+.+.++.+.+++...... +|+.|++..|.+..++.. +..++.|+.|++++| .+..+|...+.+++|+
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLN 189 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCc-hhhhhhhhhhhhhhhh
Confidence 334467899999999999998766554 899999999999988644 789999999999999 8889998777999999
Q ss_pred EEeeCCCCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCC
Q 042597 413 HLDLSSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGS 469 (693)
Q Consensus 413 ~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~ 469 (693)
.|++++|+++.+|..+..+.+|+.|.+++|. ....+.. +.++.++..|.+..+..
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~ 244 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKL 244 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCcee
Confidence 9999999999999888888889999999984 3444443 57888888888666643
No 92
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=5.1e-06 Score=90.24 Aligned_cols=176 Identities=14% Similarity=0.153 Sum_probs=105.5
Q ss_pred CcccchHHHHHHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhccccCCCC---------EEE-------EEEE
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCHQQHNFD---------VVI-------WAAV 72 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~---------~~~-------wv~~ 72 (693)
+.+||.+..++.|..++.. ++. +...++|+.|+||||+|+.+++.. ...+..+ |.. -.++
T Consensus 13 ~eivGq~~i~~~L~~~i~~--~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l-~c~~~~~~~pCg~C~~C~~i~~~~~~~~dv 89 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDA--GRINHAYLFSGPRGCGKTSSARILARSL-NCAQGPTATPCGVCESCVALAPNGPGSIDV 89 (584)
T ss_pred HHhcCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHh-ccccCCCCCcccccHHHHHhhcccCCCceE
Confidence 6799999999999999976 444 456899999999999999999876 2111110 000 0111
Q ss_pred eccCCchhhhhhchhHHHHHHHHH-HccCcEEEEEeCccccc--chhhh-----------hhhhhcccchhhhhhcCC--
Q 042597 73 IGFSDDKKWKEKSLQDKAADISSI-LSRKKFVLLLDDIWERI--DLKEL-----------VSLFLTTRSVDVCDQMDA-- 136 (693)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~--~~~~~-----------~~iliTtr~~~~~~~~~~-- 136 (693)
.+.............++...+... ..+++=++|||+++... ....+ .-|++||....+......
T Consensus 90 ieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc 169 (584)
T PRK14952 90 VELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRT 169 (584)
T ss_pred EEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhc
Confidence 111110001111122222222111 13455588999998663 23333 335566666655544333
Q ss_pred ceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcch-HHHHHHH
Q 042597 137 EKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPL-ALKTVGR 191 (693)
Q Consensus 137 ~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-al~~~~~ 191 (693)
..+++.+++.++..+.+.+.+...+..-+ ...+..|++.++|.+. ++..+-.
T Consensus 170 ~~~~F~~l~~~~i~~~L~~i~~~egi~i~---~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 170 HHYPFRLLPPRTMRALIARICEQEGVVVD---DAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred eEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33999999999999999887765442222 5677889999999875 4444333
No 93
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.38 E-value=8.1e-06 Score=85.45 Aligned_cols=172 Identities=17% Similarity=0.232 Sum_probs=104.0
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhcccc-------------------CCCCEEEEE
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQ-------------------HNFDVVIWA 70 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~-------------------~~f~~~~wv 70 (693)
..+||.++.++.+.+++..+ .-.+.+.++|++|+||||+|+.++....... .+++. +++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~~~ 91 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-IEI 91 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-EEe
Confidence 56899999999999988762 2235678999999999999999998762110 12322 222
Q ss_pred EEeccCCchhhhhhchhHHHHHHHHH-HccCcEEEEEeCcccccc--hhhh----------hhhhhcccc-hhhhhhcCC
Q 042597 71 AVIGFSDDKKWKEKSLQDKAADISSI-LSRKKFVLLLDDIWERID--LKEL----------VSLFLTTRS-VDVCDQMDA 136 (693)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~--~~~~----------~~iliTtr~-~~~~~~~~~ 136 (693)
+... ........+....+... ..+++-++|+|+++.... ...+ ..+|++|.+ ..+......
T Consensus 92 ~~~~-----~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~s 166 (355)
T TIGR02397 92 DAAS-----NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILS 166 (355)
T ss_pred eccc-----cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHh
Confidence 1110 00111122222222111 234455889999976632 3333 334445443 333332222
Q ss_pred --ceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHH
Q 042597 137 --EKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGR 191 (693)
Q Consensus 137 --~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~ 191 (693)
..+.+.+++.++..+++..++...+...+ ++.+..+++.++|.|..+.....
T Consensus 167 r~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~---~~a~~~l~~~~~g~~~~a~~~le 220 (355)
T TIGR02397 167 RCQRFDFKRIPLEDIVERLKKILDKEGIKIE---DEALELIARAADGSLRDALSLLD 220 (355)
T ss_pred heeEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCChHHHHHHHH
Confidence 23888999999999999887765443222 57889999999999976655443
No 94
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.36 E-value=2.7e-06 Score=96.74 Aligned_cols=144 Identities=17% Similarity=0.253 Sum_probs=86.9
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCC--C-CEEEE-EEEeccCCchhhhhhc
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHN--F-DVVIW-AAVIGFSDDKKWKEKS 85 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~--f-~~~~w-v~~~~~~~~~~~~~~~ 85 (693)
+++|||+++++.+++.|.. ....-+.++|++|+|||++|+.++++....... + ...+| +++..... .......
T Consensus 182 ~~~igr~~ei~~~~~~L~~--~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a-~~~~~g~ 258 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCR--RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLA-GTKYRGD 258 (731)
T ss_pred CcccCcHHHHHHHHHHHhc--CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhh-hccccch
Confidence 6799999999999998877 344567899999999999999999987322111 1 23333 23211111 0111112
Q ss_pred hhHHHHHHHHHH-ccCcEEEEEeCccccc----------chhhh---------hhhh-hcccch---------hhhhhcC
Q 042597 86 LQDKAADISSIL-SRKKFVLLLDDIWERI----------DLKEL---------VSLF-LTTRSV---------DVCDQMD 135 (693)
Q Consensus 86 ~~~~~~~l~~~l-~~~~~LlvlDdv~~~~----------~~~~~---------~~il-iTtr~~---------~~~~~~~ 135 (693)
.++.+..+.+.+ +.++.++++|+++... +...+ .++| .||+.+ .+.. .
T Consensus 259 ~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~~~~~~~d~al~r--R 336 (731)
T TIGR02639 259 FEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEYKNHFEKDRALSR--R 336 (731)
T ss_pred HHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHHHHHhhhhHHHHH--h
Confidence 233333444333 3467899999998442 11122 2333 455421 1222 2
Q ss_pred CceEEeccCCchHHHHHHHHHhh
Q 042597 136 AEKLEVYSLANDEAWKLFQEMVD 158 (693)
Q Consensus 136 ~~~~~l~~l~~~e~~~l~~~~~~ 158 (693)
...+.+++++.++..+++++...
T Consensus 337 f~~i~v~~p~~~~~~~il~~~~~ 359 (731)
T TIGR02639 337 FQKIDVGEPSIEETVKILKGLKE 359 (731)
T ss_pred CceEEeCCCCHHHHHHHHHHHHH
Confidence 23489999999999999987654
No 95
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=5.1e-06 Score=91.34 Aligned_cols=169 Identities=13% Similarity=0.223 Sum_probs=104.0
Q ss_pred CcccchHHHHHHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhccccC----------------CCCEEEEEEE
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCHQQH----------------NFDVVIWAAV 72 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~~~~----------------~f~~~~wv~~ 72 (693)
..+||.+..++.+..++.. ++. +...++|+.|+||||+|+.++...-.... +++ +++++.
T Consensus 18 ~dIiGQe~~v~~L~~aI~~--~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~D-vieida 94 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKS--NKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLD-IIEMDA 94 (725)
T ss_pred HHhcCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCc-EEEEec
Confidence 6689999999999999976 443 55689999999999999999987621111 111 011111
Q ss_pred eccCCchhhhhhchhHHHHHHHHH-HccCcEEEEEeCccccc--chhhh-----------hhhhhcccchhhhhhcCC--
Q 042597 73 IGFSDDKKWKEKSLQDKAADISSI-LSRKKFVLLLDDIWERI--DLKEL-----------VSLFLTTRSVDVCDQMDA-- 136 (693)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~--~~~~~-----------~~iliTtr~~~~~~~~~~-- 136 (693)
. .........++...+... ..+++-++|+|+++... .+..+ .-|++|++...+......
T Consensus 95 a-----sn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRc 169 (725)
T PRK07133 95 A-----SNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRV 169 (725)
T ss_pred c-----ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhc
Confidence 0 000111122222222211 13566689999998663 23333 335566666555443332
Q ss_pred ceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHH
Q 042597 137 EKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTV 189 (693)
Q Consensus 137 ~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~ 189 (693)
..+++.+++.++..+.+...+...+...+ .+.+..|++.++|.+.-+..+
T Consensus 170 q~ieF~~L~~eeI~~~L~~il~kegI~id---~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 170 QRFNFRRISEDEIVSRLEFILEKENISYE---KNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred eeEEccCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 23999999999999999887665442222 567889999999977544333
No 96
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.35 E-value=2.7e-07 Score=68.53 Aligned_cols=56 Identities=38% Similarity=0.630 Sum_probs=28.2
Q ss_pred cccEEEccCCcchhhch-HhhhccccccEEeeCCCCCCccCh-hhhcCCCCcEeccCCc
Q 042597 386 SLRVLALGRNFFLSKLR-SGIANLVSLHHLDLSSTNITGLPQ-DLKALEKLRYLNLDHA 442 (693)
Q Consensus 386 ~L~~L~L~~~~~~~~~p-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~ 442 (693)
+|++|++++| .+..+| ..|.++++|++|++++|.++.+|+ .+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4555555555 444444 234555555555555555555433 2455555555555554
No 97
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.35 E-value=4.4e-08 Score=104.24 Aligned_cols=127 Identities=30% Similarity=0.409 Sum_probs=83.1
Q ss_pred cccceeeeccccchhhc-cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeC
Q 042597 339 EGAKRVSLMDNRILRLL-EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLS 417 (693)
Q Consensus 339 ~~l~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~ 417 (693)
..+..+.+..|.+..+. .+..+.+|..|++.+|.+..+... +..+++|++|++++| .+..+. ++..++.|+.|+++
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELNLS 148 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccc-cccccc-chhhccchhhheec
Confidence 34444556666666533 367777777777777777766553 456777777777777 565554 56667777777777
Q ss_pred CCCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCC
Q 042597 418 STNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSG 470 (693)
Q Consensus 418 ~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~ 470 (693)
+|.|+.++ .+..+.+|+.+++++| .+..+.......+.+|+.+.+.+|.+.
T Consensus 149 ~N~i~~~~-~~~~l~~L~~l~l~~n-~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 149 GNLISDIS-GLESLKSLKLLDLSYN-RIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred cCcchhcc-CCccchhhhcccCCcc-hhhhhhhhhhhhccchHHHhccCCchh
Confidence 77777765 4555777777777777 455555410246777777777766543
No 98
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=5.2e-06 Score=84.78 Aligned_cols=165 Identities=15% Similarity=0.246 Sum_probs=102.2
Q ss_pred CcccchHHHHHHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhcc---ccCCCCEEEEEEEeccCCchhhhhhc
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCH---QQHNFDVVIWAAVIGFSDDKKWKEKS 85 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~---~~~~f~~~~wv~~~~~~~~~~~~~~~ 85 (693)
+.++|.+..++.+..++.. ++. +...++|+.|+||||+|..++...-. ...|+|...|.... . .......
T Consensus 4 ~~i~g~~~~~~~l~~~~~~--~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~---~-~~i~v~~ 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIK--NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN---K-KSIGVDD 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHc--CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc---C-CCCCHHH
Confidence 4678999999999999866 443 56689999999999999999986521 23566765554321 0 1111111
Q ss_pred hhHHHHHHHH-HHccCcEEEEEeCccccc--chhhh----------hhhhhcccch-hhhhhcCCc--eEEeccCCchHH
Q 042597 86 LQDKAADISS-ILSRKKFVLLLDDIWERI--DLKEL----------VSLFLTTRSV-DVCDQMDAE--KLEVYSLANDEA 149 (693)
Q Consensus 86 ~~~~~~~l~~-~l~~~~~LlvlDdv~~~~--~~~~~----------~~iliTtr~~-~~~~~~~~~--~~~l~~l~~~e~ 149 (693)
..+....+.. -..+++=++|+|+++... .+..+ ..+|++|.+. .+....... .+.+.+++.++.
T Consensus 78 ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~ 157 (313)
T PRK05564 78 IRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEI 157 (313)
T ss_pred HHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHH
Confidence 1222221111 123455577788876553 34444 4556565544 333322322 388999999999
Q ss_pred HHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHH
Q 042597 150 WKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALK 187 (693)
Q Consensus 150 ~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~ 187 (693)
...+.+.+.... .+.++.++..++|.|..+.
T Consensus 158 ~~~l~~~~~~~~-------~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 158 EKFISYKYNDIK-------EEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred HHHHHHHhcCCC-------HHHHHHHHHHcCCCHHHHH
Confidence 988876543221 4567889999999986554
No 99
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=5.4e-06 Score=93.73 Aligned_cols=167 Identities=12% Similarity=0.127 Sum_probs=103.0
Q ss_pred CcccchHHHHHHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhcccc---------------------CCCCEE
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCHQQ---------------------HNFDVV 67 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~~~---------------------~~f~~~ 67 (693)
..+||.+..++.|..++.. ++. +.+.++|+.|+||||+|+.+++.+-... .+++ +
T Consensus 15 ~eiiGqe~v~~~L~~~i~~--~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d-v 91 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDS--GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD-V 91 (824)
T ss_pred HHhcCcHHHHHHHHHHHHh--CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc-E
Confidence 5689999999999999877 444 4578999999999999999999872111 1111 1
Q ss_pred EEEEEeccCCchhhhhhchhHHHHHHH-HHHccCcEEEEEeCcccccc--hhhh----------hh-hhhcccchhhhhh
Q 042597 68 IWAAVIGFSDDKKWKEKSLQDKAADIS-SILSRKKFVLLLDDIWERID--LKEL----------VS-LFLTTRSVDVCDQ 133 (693)
Q Consensus 68 ~wv~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~LlvlDdv~~~~~--~~~~----------~~-iliTtr~~~~~~~ 133 (693)
++++.... ....+..++...+. .-..++.=++|||+++.... ...+ .. |++|+....+...
T Consensus 92 ~eidaas~-----~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~T 166 (824)
T PRK07764 92 TEIDAASH-----GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGT 166 (824)
T ss_pred EEeccccc-----CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 12211000 01111111111111 11235555889999997632 2222 33 4455555555554
Q ss_pred cCCce--EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHH
Q 042597 134 MDAEK--LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALK 187 (693)
Q Consensus 134 ~~~~~--~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~ 187 (693)
..... |++..++.++..+++.+.+.......+ ......|++.++|.+..+.
T Consensus 167 IrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id---~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 167 IRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE---PGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred HHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 44333 899999999999999887755442222 5667889999999884443
No 100
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=8.3e-06 Score=84.73 Aligned_cols=161 Identities=14% Similarity=0.140 Sum_probs=98.5
Q ss_pred CcccchHHHHHHHHHHhhhcCC--------CeeEEEEEcCCCCcHHHHHHHHHhhhccc------------------cCC
Q 042597 10 HTVVGQELLLYRVWRCITDQEK--------NRRIIGLYGTGGVGKTTILTQVNNNFCHQ------------------QHN 63 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~--------~~~vv~i~G~~GiGKTtla~~~~~~~~~~------------------~~~ 63 (693)
+.++|.+..++.+..++..... -.+.+.++|++|+|||++|..++...-.. ..|
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 5789999999999999987321 24668899999999999999998865111 112
Q ss_pred CCEEEEEEEeccCCchhhhhhchhHHHHHHHHHH-----ccCcEEEEEeCcccccc--hhhh----------h-hhhhcc
Q 042597 64 FDVVIWAAVIGFSDDKKWKEKSLQDKAADISSIL-----SRKKFVLLLDDIWERID--LKEL----------V-SLFLTT 125 (693)
Q Consensus 64 f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~--~~~~----------~-~iliTt 125 (693)
.|.. ++.. .......++ +..+.+.. .+++-++|+|+++.... ...+ . -|++|+
T Consensus 85 pD~~-~i~~-------~~~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~ 155 (394)
T PRK07940 85 PDVR-VVAP-------EGLSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAP 155 (394)
T ss_pred CCEE-Eecc-------ccccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEEC
Confidence 2221 1111 001111111 12222222 34555888899987632 2222 3 344555
Q ss_pred cchhhhhhcCCce--EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHH
Q 042597 126 RSVDVCDQMDAEK--LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALK 187 (693)
Q Consensus 126 r~~~~~~~~~~~~--~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~ 187 (693)
....+........ +.+.+++.++..+.+.+..+ .+ .+.+..+++.++|.|....
T Consensus 156 ~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-----~~---~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 156 SPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-----VD---PETARRAARASQGHIGRAR 211 (394)
T ss_pred ChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-----CC---HHHHHHHHHHcCCCHHHHH
Confidence 5445544433333 89999999999988874321 11 4667889999999996543
No 101
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=7e-06 Score=89.09 Aligned_cols=165 Identities=16% Similarity=0.194 Sum_probs=102.5
Q ss_pred CcccchHHHHHHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhccccCC-------------------CCEEEE
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCHQQHN-------------------FDVVIW 69 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~~~~~-------------------f~~~~w 69 (693)
..+||.+..++.+..++.. ++. +...++|++|+||||+|+.+++.. ..... |.-.++
T Consensus 16 ~divGq~~v~~~L~~~i~~--~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l-~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQ--QRLHHAYLFTGTRGVGKTTLARILAKSL-NCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred HHhcCcHHHHHHHHHHHHc--CCCCEEEEEECCCCCCHHHHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 6789999999999999876 444 456899999999999999998876 21110 111122
Q ss_pred EEEeccCCchhhhhhchhHHHHHHHHHH-----ccCcEEEEEeCcccccc--hhhh----------h-hhhhcccchhhh
Q 042597 70 AAVIGFSDDKKWKEKSLQDKAADISSIL-----SRKKFVLLLDDIWERID--LKEL----------V-SLFLTTRSVDVC 131 (693)
Q Consensus 70 v~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~--~~~~----------~-~iliTtr~~~~~ 131 (693)
++.. .....++ +..+.+.. .+++-++|+|+++.... ...+ . -|++||....+.
T Consensus 93 i~~~--------~~~~vd~-ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil 163 (527)
T PRK14969 93 VDAA--------SNTQVDA-MRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIP 163 (527)
T ss_pred eecc--------ccCCHHH-HHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCc
Confidence 2110 0111111 11222222 35566999999987643 3333 3 344555544443
Q ss_pred hhcCCce--EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcch-HHHHH
Q 042597 132 DQMDAEK--LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPL-ALKTV 189 (693)
Q Consensus 132 ~~~~~~~--~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-al~~~ 189 (693)
....... +++.+++.++..+.+.+.+...+... -...+..|++.++|.+. |+..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~---~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 164 VTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF---DATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred hhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 3222222 89999999999998888776543222 25677899999999885 44333
No 102
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=9.1e-06 Score=88.99 Aligned_cols=169 Identities=14% Similarity=0.170 Sum_probs=100.7
Q ss_pred CcccchHHHHHHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEE------------------
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWA------------------ 70 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv------------------ 70 (693)
..+||.+..+..|..++.. ++. +...++|+.|+||||+|+.+++.. ......+.-.|.
T Consensus 16 ~eivGQe~i~~~L~~~i~~--~ri~ha~Lf~Gp~GvGKttlA~~lAk~L-~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRM--DRVGHGYIFSGLRGVGKTTAARVFAKAV-NCQRMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred HHhcCcHHHHHHHHHHHHc--CCCCeeEEEECCCCCCHHHHHHHHHHHh-CCCCcCCccccccccCCCCccCHHHHHHhc
Confidence 6799999999999998866 444 558899999999999999999877 221111000000
Q ss_pred ----EEeccCCchhhhhhchhHHHHHHHH-HHccCcEEEEEeCcccccc--hhhh----------hh-hhhcccchhhhh
Q 042597 71 ----AVIGFSDDKKWKEKSLQDKAADISS-ILSRKKFVLLLDDIWERID--LKEL----------VS-LFLTTRSVDVCD 132 (693)
Q Consensus 71 ----~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~~--~~~~----------~~-iliTtr~~~~~~ 132 (693)
++...............++...+.. -..+.+=++|+|+++.... ...+ .. |++|++...+..
T Consensus 93 g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~ 172 (620)
T PRK14954 93 GTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPA 172 (620)
T ss_pred cCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 0001100000001111122222210 1234455789999987643 3333 23 445555555544
Q ss_pred hcCC--ceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcch
Q 042597 133 QMDA--EKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPL 184 (693)
Q Consensus 133 ~~~~--~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl 184 (693)
.... ..+++.+++.++....+.+.+...+...+ .+.++.|++.++|...
T Consensus 173 TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~---~eal~~La~~s~Gdlr 223 (620)
T PRK14954 173 TIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID---ADALQLIARKAQGSMR 223 (620)
T ss_pred HHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHH
Confidence 3332 23899999999999888887765442222 6788999999999664
No 103
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.31 E-value=1.3e-07 Score=91.69 Aligned_cols=90 Identities=13% Similarity=0.074 Sum_probs=57.5
Q ss_pred ccccCCccEEEEeccccccc------hhhhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeecccc
Q 042597 544 RSGFRSLNTVRVNGCKVKDL------TWLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYG 617 (693)
Q Consensus 544 ~~~~~~L~~L~l~~~~l~~~------~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 617 (693)
+..+++|+.|+|.+|.++.- ..+..+|+|+.|.+++|..-..- . .. +...-...+|+|+.|.+.++
T Consensus 209 l~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~G-a----~a---~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEG-A----IA---FVDALKESAPSLEVLELAGN 280 (382)
T ss_pred HHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccccc-H----HH---HHHHHhccCCCCceeccCcc
Confidence 46788999999999955542 24556788999999998642211 0 00 10012334899999999887
Q ss_pred cccc----ccccCCCCCCCccEEEEccC
Q 042597 618 RNLK----SIYPNPLPFPKLKKIQVLHC 641 (693)
Q Consensus 618 ~~l~----~l~~~~~~~~~L~~L~l~~c 641 (693)
.--. .+.......|.|+.|++.+|
T Consensus 281 eIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 281 EITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred hhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 4221 12233455899999999876
No 104
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.8e-05 Score=81.34 Aligned_cols=182 Identities=16% Similarity=0.230 Sum_probs=113.5
Q ss_pred CCcccchHHHHHHHHHHhhh--cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCc--------
Q 042597 9 DHTVVGQELLLYRVWRCITD--QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDD-------- 78 (693)
Q Consensus 9 ~~~~vGr~~~~~~l~~~l~~--~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~-------- 78 (693)
++.+.+|+++++++...|.. .+.....+.|+|++|+|||+.++.++.+........+ ++++++......
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~-~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE-VVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc-eEEEeeeeCCCHHHHHHHHH
Confidence 35599999999999999875 2344455999999999999999999999833323333 788888332221
Q ss_pred -----hhhhhhchhHHHHHHHHHH--ccCcEEEEEeCcccccchh-----hh--------hh--hhhcccch--------
Q 042597 79 -----KKWKEKSLQDKAADISSIL--SRKKFVLLLDDIWERIDLK-----EL--------VS--LFLTTRSV-------- 128 (693)
Q Consensus 79 -----~~~~~~~~~~~~~~l~~~l--~~~~~LlvlDdv~~~~~~~-----~~--------~~--iliTtr~~-------- 128 (693)
......+..+....+.+.+ +++.+++|||+++....-. .+ ++ +|..+-+.
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhh
Confidence 1111233445555566665 3578999999998664332 22 11 22222222
Q ss_pred hhhhhcCCceEEeccCCchHHHHHHHHHhhcc--cCCCCCChHHHHHHHHHHhCCcc-hHHHHHHH
Q 042597 129 DVCDQMDAEKLEVYSLANDEAWKLFQEMVDRS--TLGSHTSIPELAETLARECSGLP-LALKTVGR 191 (693)
Q Consensus 129 ~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~--~~~~~~~~~~~~~~I~~~~~G~P-lal~~~~~ 191 (693)
.+....+...+..+|.+.+|-..++..++... ....+.+.-+++..++...+|-. .|+..+-+
T Consensus 175 rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~ 240 (366)
T COG1474 175 RVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRR 240 (366)
T ss_pred hhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 22333444458999999999999998887532 22233444556666666666533 44444433
No 105
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.29 E-value=2.8e-06 Score=88.73 Aligned_cols=158 Identities=17% Similarity=0.220 Sum_probs=93.5
Q ss_pred CcccchHHHHHHHHHHhhhc--C---------CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCc
Q 042597 10 HTVVGQELLLYRVWRCITDQ--E---------KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDD 78 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~--~---------~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 78 (693)
+.+.|+++.++++.+.+... . ...+-+.++|++|+|||++|+++++.. ...| +.+. .
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~-----~~v~---~- 189 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF-----IRVV---G- 189 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCE-----Eecc---h-
Confidence 45889999999999887431 0 234568999999999999999999986 3333 1111 0
Q ss_pred hhhhhh---chhHHHHHHHHHH-ccCcEEEEEeCcccccc----------------hhhh------------hhhhhccc
Q 042597 79 KKWKEK---SLQDKAADISSIL-SRKKFVLLLDDIWERID----------------LKEL------------VSLFLTTR 126 (693)
Q Consensus 79 ~~~~~~---~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~~----------------~~~~------------~~iliTtr 126 (693)
...... ........+.+.. ...+.++++||++.... +..+ ..||+||.
T Consensus 190 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn 269 (364)
T TIGR01242 190 SELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATN 269 (364)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecC
Confidence 111111 1111122222222 34568999999975410 1111 24666666
Q ss_pred chhh-----hhhcCCc-eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcc
Q 042597 127 SVDV-----CDQMDAE-KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLP 183 (693)
Q Consensus 127 ~~~~-----~~~~~~~-~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 183 (693)
.... ....... .+.++..+.++..++|..++.......+. ....+++.+.|..
T Consensus 270 ~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~----~~~~la~~t~g~s 328 (364)
T TIGR01242 270 RPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV----DLEAIAKMTEGAS 328 (364)
T ss_pred ChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC----CHHHHHHHcCCCC
Confidence 4332 1111222 28899999999999998877554322221 2567778887764
No 106
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.28 E-value=1.1e-07 Score=101.27 Aligned_cols=108 Identities=31% Similarity=0.316 Sum_probs=89.0
Q ss_pred CCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCCCCCccChhhhcCCCCcEe
Q 042597 358 PTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTNITGLPQDLKALEKLRYL 437 (693)
Q Consensus 358 ~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L 437 (693)
..+..+..+.+..|.+..+... +..+++|.+|++.+| .+..+...+..+++|++|++++|.|+.+. ++..+..|+.|
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~-l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L 145 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNH-LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKEL 145 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcc-cccccceeeeecccc-chhhcccchhhhhcchheecccccccccc-chhhccchhhh
Confidence 4566777777888877774333 678999999999999 77777745888999999999999999986 67888889999
Q ss_pred ccCCcccccccccccccCCCccccccccccCCCc
Q 042597 438 NLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGG 471 (693)
Q Consensus 438 ~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~ 471 (693)
++.+| .+..+.. +..+.+|+.+++.+|.+..
T Consensus 146 ~l~~N-~i~~~~~--~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 146 NLSGN-LISDISG--LESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred eeccC-cchhccC--CccchhhhcccCCcchhhh
Confidence 99999 7788776 5679999999999987554
No 107
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.4e-05 Score=83.74 Aligned_cols=171 Identities=12% Similarity=0.187 Sum_probs=101.0
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccc-----cCCCCEEEEEEEeccCCchhhhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQ-----QHNFDVVIWAAVIGFSDDKKWKEK 84 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~-----~~~f~~~~wv~~~~~~~~~~~~~~ 84 (693)
+.++|.+..++.+..++..+ .-.+.+.++|++|+||||+|..+++..... ...|...+ +.. .........
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l---~~~~~~~~~ 91 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FEL---DAASNNSVD 91 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEe---ccccCCCHH
Confidence 67899999999999999762 234688899999999999999998876211 11121111 111 110000011
Q ss_pred chhHHHHHHHH-HHccCcEEEEEeCcccccc--hhhh----------hhhhh-cccchhhhhhcC--CceEEeccCCchH
Q 042597 85 SLQDKAADISS-ILSRKKFVLLLDDIWERID--LKEL----------VSLFL-TTRSVDVCDQMD--AEKLEVYSLANDE 148 (693)
Q Consensus 85 ~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~~--~~~~----------~~ili-Ttr~~~~~~~~~--~~~~~l~~l~~~e 148 (693)
...+....+.. -..+++-++|+|+++.... +..+ ..+|+ |++...+..... ...+++.+++.++
T Consensus 92 ~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~ 171 (367)
T PRK14970 92 DIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKD 171 (367)
T ss_pred HHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHH
Confidence 11122221111 1124455899999986532 3333 23333 434333332222 2238899999999
Q ss_pred HHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHH
Q 042597 149 AWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKT 188 (693)
Q Consensus 149 ~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~ 188 (693)
....+.+.+...+...+ .+.++.++..++|.+..+..
T Consensus 172 l~~~l~~~~~~~g~~i~---~~al~~l~~~~~gdlr~~~~ 208 (367)
T PRK14970 172 IKEHLAGIAVKEGIKFE---DDALHIIAQKADGALRDALS 208 (367)
T ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHHHhCCCCHHHHHH
Confidence 99999887765543222 67889999999997754433
No 108
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.26 E-value=4.7e-06 Score=74.86 Aligned_cols=95 Identities=20% Similarity=0.147 Sum_probs=59.9
Q ss_pred cchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchh-HHHH
Q 042597 13 VGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQ-DKAA 91 (693)
Q Consensus 13 vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~-~~~~ 91 (693)
+|++..+..+...+.. ...+.+.|+|++|+|||++++++++.. . ..-..+++++..+............. ....
T Consensus 1 ~~~~~~~~~i~~~~~~--~~~~~v~i~G~~G~GKT~l~~~i~~~~-~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (151)
T cd00009 1 VGQEEAIEALREALEL--PPPKNLLLYGPPGTGKTTLARAIANEL-F--RPGAPFLYLNASDLLEGLVVAELFGHFLVRL 75 (151)
T ss_pred CchHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHh-h--cCCCCeEEEehhhhhhhhHHHHHhhhhhHhH
Confidence 4888999999998866 456789999999999999999999987 2 22234556655332221111100000 0011
Q ss_pred HHHHHHccCcEEEEEeCcccc
Q 042597 92 DISSILSRKKFVLLLDDIWER 112 (693)
Q Consensus 92 ~l~~~l~~~~~LlvlDdv~~~ 112 (693)
........+..++|+||++..
T Consensus 76 ~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 76 LFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred HHHhhccCCCeEEEEeChhhh
Confidence 112223456789999999864
No 109
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=1.8e-05 Score=84.22 Aligned_cols=166 Identities=13% Similarity=0.181 Sum_probs=100.7
Q ss_pred CcccchHHHHHHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhcccc--------------------CCCCEEE
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCHQQ--------------------HNFDVVI 68 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~~~--------------------~~f~~~~ 68 (693)
+.+||.+..++.+..++.. ++. +.+.++|++|+||||+|+.+++...... .+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~--~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d--- 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRF--NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD--- 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHc--CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc---
Confidence 6799999999999999876 444 5678999999999999999998762110 1122
Q ss_pred EEEEeccCCchhhhhhchhHHHHHHHH-HHccCcEEEEEeCcccccc--hhhh----------hhhh-hcccchhhhhhc
Q 042597 69 WAAVIGFSDDKKWKEKSLQDKAADISS-ILSRKKFVLLLDDIWERID--LKEL----------VSLF-LTTRSVDVCDQM 134 (693)
Q Consensus 69 wv~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~~--~~~~----------~~il-iTtr~~~~~~~~ 134 (693)
|+.+.+. .........+....+.. -..+.+-++|+|+++.... ...+ ..+| +|++...+....
T Consensus 92 ~~~i~g~---~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI 168 (451)
T PRK06305 92 VLEIDGA---SHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTI 168 (451)
T ss_pred eEEeecc---ccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHH
Confidence 1111110 00001111111111111 1235667889999986632 2222 3344 444444443333
Q ss_pred CCc--eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHH
Q 042597 135 DAE--KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLAL 186 (693)
Q Consensus 135 ~~~--~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal 186 (693)
..+ .+++.+++.++....+.+.+...+...+ ++.++.|++.++|.+.-+
T Consensus 169 ~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~---~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 169 LSRCQKMHLKRIPEETIIDKLALIAKQEGIETS---REALLPIARAAQGSLRDA 219 (451)
T ss_pred HHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHH
Confidence 222 3899999999999988887765442222 678899999999977433
No 110
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=1.1e-05 Score=88.19 Aligned_cols=175 Identities=15% Similarity=0.169 Sum_probs=104.7
Q ss_pred CcccchHHHHHHHHHHhhhcCCC-eeEEEEEcCCCCcHHHHHHHHHhhhccccCCC-------CEEEE------------
Q 042597 10 HTVVGQELLLYRVWRCITDQEKN-RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNF-------DVVIW------------ 69 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~-~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f-------~~~~w------------ 69 (693)
..+||.+..++.|..++.. ++ .+.+.++|+.|+||||+|+.+++.. ...... +..-+
T Consensus 24 ~dliGq~~~v~~L~~~~~~--gri~ha~L~~Gp~GvGKTt~Ar~lAk~L-~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h 100 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFET--GRIAQAFMLTGVRGVGKTTTARILARAL-NYEGPDGDGGPTIDLCGVGEHCQAIMEGRH 100 (598)
T ss_pred HHhcCcHHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHhh-CcCCccccCCCccccCcccHHHHHHhcCCC
Confidence 5699999999999999876 44 4568899999999999999999976 211100 00000
Q ss_pred EEEeccCCchhhhhhchhHHHHHHHHH-HccCcEEEEEeCcccccc--hhhh----------hh-hhhcccchhhhhhcC
Q 042597 70 AAVIGFSDDKKWKEKSLQDKAADISSI-LSRKKFVLLLDDIWERID--LKEL----------VS-LFLTTRSVDVCDQMD 135 (693)
Q Consensus 70 v~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~--~~~~----------~~-iliTtr~~~~~~~~~ 135 (693)
.++.+..........+..+.+..+... ..+++=++|+|+++.... ...+ .+ |++|+....+.....
T Consensus 101 ~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~ 180 (598)
T PRK09111 101 VDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVL 180 (598)
T ss_pred CceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHH
Confidence 000111110001111111222211110 123445789999987742 3333 33 445555555443333
Q ss_pred Cce--EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHH
Q 042597 136 AEK--LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVG 190 (693)
Q Consensus 136 ~~~--~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~ 190 (693)
... +.+..++.++....+.+.+......-+ .+.++.|++.++|.+.-+....
T Consensus 181 SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~---~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 181 SRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE---DEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hheeEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 333 899999999999999888765543222 5788999999999986554443
No 111
>PLN03150 hypothetical protein; Provisional
Probab=98.25 E-value=1.4e-06 Score=97.06 Aligned_cols=110 Identities=23% Similarity=0.272 Sum_probs=91.9
Q ss_pred ccceeeeccccchhh-c-cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeC
Q 042597 340 GAKRVSLMDNRILRL-L-EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLS 417 (693)
Q Consensus 340 ~l~~l~l~~~~~~~~-~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~ 417 (693)
.++.|.+.++.+... + .+..+++|+.|+|++|.+.+..|..++.+++|++|+|++|.....+|..++++++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 367788888888653 3 47889999999999999997777669999999999999996666899999999999999999
Q ss_pred CCCCCc-cChhhhcC-CCCcEeccCCcccccccc
Q 042597 418 STNITG-LPQDLKAL-EKLRYLNLDHAYKLSIIP 449 (693)
Q Consensus 418 ~~~i~~-lp~~~~~l-~~L~~L~l~~~~~l~~~p 449 (693)
+|+++. +|..++.+ .++..+++.+|..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999986 89888764 577888998885544433
No 112
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1e-05 Score=87.71 Aligned_cols=172 Identities=17% Similarity=0.209 Sum_probs=105.9
Q ss_pred CcccchHHHHHHHHHHhhhcCCC-eeEEEEEcCCCCcHHHHHHHHHhhhccccC--------------------CCCEEE
Q 042597 10 HTVVGQELLLYRVWRCITDQEKN-RRIIGLYGTGGVGKTTILTQVNNNFCHQQH--------------------NFDVVI 68 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~-~~vv~i~G~~GiGKTtla~~~~~~~~~~~~--------------------~f~~~~ 68 (693)
+.+||.+..++.|...+.. ++ .+.+.++|+.|+||||+|+.+++.. .... +.+ ++
T Consensus 16 ~dIiGQe~v~~~L~~ai~~--~ri~ha~Lf~GPpG~GKTtiArilAk~L-~C~~~~~~~pCg~C~sC~~i~~g~hpD-v~ 91 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQE--NRVAPAYLFSGTRGVGKTTIARIFAKAL-NCETAPTGEPCNTCEQCRKVTQGMHVD-VV 91 (624)
T ss_pred HHhcCCHHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHhc-cccCCCCCCCCcccHHHHHHhcCCCCc-eE
Confidence 6789999998888888866 44 4678899999999999999999887 2211 111 12
Q ss_pred EEEEeccCCchhhhhhchhHHHHHHHH-HHccCcEEEEEeCccccc--chhhh----------hhh-hhcccchhhhhhc
Q 042597 69 WAAVIGFSDDKKWKEKSLQDKAADISS-ILSRKKFVLLLDDIWERI--DLKEL----------VSL-FLTTRSVDVCDQM 134 (693)
Q Consensus 69 wv~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~--~~~~~----------~~i-liTtr~~~~~~~~ 134 (693)
+++... .........+...+.. -..+++-++|||+++... ....+ ..+ ++|+....+....
T Consensus 92 eId~a~-----~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI 166 (624)
T PRK14959 92 EIDGAS-----NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTI 166 (624)
T ss_pred EEeccc-----ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHH
Confidence 221100 0011111111111111 124566799999998763 23333 233 4455545444332
Q ss_pred CCc--eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcc-hHHHHHHHHH
Q 042597 135 DAE--KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLP-LALKTVGRAM 193 (693)
Q Consensus 135 ~~~--~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P-lal~~~~~~l 193 (693)
... .+++.+++.++..+.+.+.+.......+ .+.++.|++.++|.+ .|+..+...+
T Consensus 167 ~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id---~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 167 VSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD---PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 222 3899999999999999887665442222 678899999999966 5666665544
No 113
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.24 E-value=6.9e-06 Score=94.63 Aligned_cols=169 Identities=15% Similarity=0.175 Sum_probs=94.3
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCC--C-CEEEE-EEEeccCCchhhhhhc
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHN--F-DVVIW-AAVIGFSDDKKWKEKS 85 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~--f-~~~~w-v~~~~~~~~~~~~~~~ 85 (693)
++++||+++++.++++|.. .....+.++|++|+|||++|..++.+....... . ...+| +++..... ...-...
T Consensus 179 ~~~igr~~ei~~~~~~L~r--~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~a-g~~~~ge 255 (821)
T CHL00095 179 DPVIGREKEIERVIQILGR--RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLA-GTKYRGE 255 (821)
T ss_pred CCCCCcHHHHHHHHHHHcc--cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhc-cCCCccH
Confidence 5789999999999999987 344566799999999999999999987322111 1 23344 23221111 0011112
Q ss_pred hhHHHHHHHHHH-ccCcEEEEEeCccccc---------chhhh---------hhhhhcccchhhhh--------hcCCce
Q 042597 86 LQDKAADISSIL-SRKKFVLLLDDIWERI---------DLKEL---------VSLFLTTRSVDVCD--------QMDAEK 138 (693)
Q Consensus 86 ~~~~~~~l~~~l-~~~~~LlvlDdv~~~~---------~~~~~---------~~iliTtr~~~~~~--------~~~~~~ 138 (693)
.++.+..+.+.+ +.+++++++|+++... +...+ .++|.+|...+... ......
T Consensus 256 ~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~ 335 (821)
T CHL00095 256 FEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQP 335 (821)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCHHHHHHHHhcCHHHHhcceE
Confidence 233333333333 3468999999996331 11122 33444444443211 112233
Q ss_pred EEeccCCchHHHHHHHHHhhccc-CCCCCChHHHHHHHHHHhCC
Q 042597 139 LEVYSLANDEAWKLFQEMVDRST-LGSHTSIPELAETLARECSG 181 (693)
Q Consensus 139 ~~l~~l~~~e~~~l~~~~~~~~~-~~~~~~~~~~~~~I~~~~~G 181 (693)
+.+.+.+.++...++........ ...-.--.++...+++.++|
T Consensus 336 I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~ 379 (821)
T CHL00095 336 VYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQ 379 (821)
T ss_pred EecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Confidence 78888898998888765432110 00001124566666666653
No 114
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.24 E-value=7.4e-05 Score=80.36 Aligned_cols=223 Identities=14% Similarity=0.187 Sum_probs=122.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHccCcEEEEEeCccc
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILSRKKFVLLLDDIWE 111 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~ 111 (693)
....+.|+|++|+|||+|++++++.. .....-..+++++..++.. ...... .......+.+.+++ .-+++|||++.
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~~-~~~~~~~~v~yi~~~~~~~-~~~~~~-~~~~~~~~~~~~~~-~dlLiiDDi~~ 222 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNYI-LEKNPNAKVVYVTSEKFTN-DFVNAL-RNNTMEEFKEKYRS-VDVLLIDDIQF 222 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHH-HHhCCCCeEEEEEHHHHHH-HHHHHH-HcCcHHHHHHHHhc-CCEEEEehhhh
Confidence 34678999999999999999999987 2222233456666533211 000000 00112233344442 34888999975
Q ss_pred ccc----hhhh-----------hhhhhcccchh---------hhhhcCCce-EEeccCCchHHHHHHHHHhhcccCCCCC
Q 042597 112 RID----LKEL-----------VSLFLTTRSVD---------VCDQMDAEK-LEVYSLANDEAWKLFQEMVDRSTLGSHT 166 (693)
Q Consensus 112 ~~~----~~~~-----------~~iliTtr~~~---------~~~~~~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~ 166 (693)
... .+.+ ..||+|+.... +..++.... +.+.+.+.++-.+++.+.+.......+
T Consensus 223 l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~- 301 (450)
T PRK00149 223 LAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLP- 301 (450)
T ss_pred hcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCC-
Confidence 421 1121 34777765431 233444333 899999999999999998876443333
Q ss_pred ChHHHHHHHHHHhCCcchHHHHHHHHHh-------cCCChhHHHHHHHHHhhhhcccCCCcHHHHHHHHHhhcCCCchhh
Q 042597 167 SIPELAETLARECSGLPLALKTVGRAMK-------SQTKVGDWQRAIKKMRISASKFTGMDEKVFSRLKFSYDSLSTDEL 239 (693)
Q Consensus 167 ~~~~~~~~I~~~~~G~Plal~~~~~~l~-------~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~ 239 (693)
++.++.|++.+.|....+.-+-..+. ..-+.+..+.++..+...... .-..+.+.....-.| +++.+++
T Consensus 302 --~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~~~~~~~-~~~~~~i~~~v~~~~-~i~~~~l 377 (450)
T PRK00149 302 --DEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDLLAAQKK-KITIENIQKVVAEYY-NIKVSDL 377 (450)
T ss_pred --HHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCC-CCCHHHHHHHHHHHc-CCCHHHH
Confidence 67889999999988765544333221 124566677777665321111 111224444443333 3332222
Q ss_pred hhHHhhhcccCCCCccChHHHHHHHHhcCcc
Q 042597 240 RSCLLYCCLYPKDYEIPRRELIDYWISEGFV 270 (693)
Q Consensus 240 k~~~l~~~~f~~~~~i~~~~li~~w~~~g~~ 270 (693)
+ -=.+...+...+.+.+|++..+.
T Consensus 378 ~-------~~~R~~~~~~aR~iamyl~~~~~ 401 (450)
T PRK00149 378 K-------SKSRTRNIARPRQIAMYLAKELT 401 (450)
T ss_pred h-------CCCCCcccChHHHHHHHHHHHhc
Confidence 1 00123345556677777765443
No 115
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.23 E-value=1.9e-05 Score=77.25 Aligned_cols=163 Identities=17% Similarity=0.176 Sum_probs=96.5
Q ss_pred CcccchHHHHHH---HHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhch
Q 042597 10 HTVVGQELLLYR---VWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSL 86 (693)
Q Consensus 10 ~~~vGr~~~~~~---l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~ 86 (693)
+.+||.++.+-+ |.+++.. ++...+.+||++|+||||||+.+...- +.+- ..+|....... ...+.
T Consensus 138 ~dyvGQ~hlv~q~gllrs~ieq--~~ipSmIlWGppG~GKTtlArlia~ts---k~~S--yrfvelSAt~a----~t~dv 206 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLIEQ--NRIPSMILWGPPGTGKTTLARLIASTS---KKHS--YRFVELSATNA----KTNDV 206 (554)
T ss_pred HHhcchhhhcCcchHHHHHHHc--CCCCceEEecCCCCchHHHHHHHHhhc---CCCc--eEEEEEecccc----chHHH
Confidence 446666655533 4444444 788999999999999999999998875 3322 33444433222 11222
Q ss_pred hHHHHHHH--HHHccCcEEEEEeCcccc--cchhhh------h---hhhhcccchhh------hhhcCCceEEeccCCch
Q 042597 87 QDKAADIS--SILSRKKFVLLLDDIWER--IDLKEL------V---SLFLTTRSVDV------CDQMDAEKLEVYSLAND 147 (693)
Q Consensus 87 ~~~~~~l~--~~l~~~~~LlvlDdv~~~--~~~~~~------~---~iliTtr~~~~------~~~~~~~~~~l~~l~~~ 147 (693)
....+.-+ ..+.++|.++++|+|+.. .+-+.+ + -|=.||.++.. ..+|. .+.++.|..+
T Consensus 207 R~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~--VfvLekL~~n 284 (554)
T KOG2028|consen 207 RDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCR--VFVLEKLPVN 284 (554)
T ss_pred HHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHHhccc--eeEeccCCHH
Confidence 22222222 234568899999999854 344433 2 23367877643 22222 2889999999
Q ss_pred HHHHHHHHHhh---cccC---CCCC----ChHHHHHHHHHHhCCcchH
Q 042597 148 EAWKLFQEMVD---RSTL---GSHT----SIPELAETLARECSGLPLA 185 (693)
Q Consensus 148 e~~~l~~~~~~---~~~~---~~~~----~~~~~~~~I~~~~~G~Pla 185 (693)
+...++.+... +..+ ..+. --..+.+-++..|.|-..+
T Consensus 285 ~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 285 AVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred HHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 99999988543 2222 1111 1234566677777776643
No 116
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=1.7e-05 Score=84.98 Aligned_cols=173 Identities=14% Similarity=0.199 Sum_probs=103.0
Q ss_pred CcccchHHHHHHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhccccC-CCC----E---E-----EEEEEecc
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCHQQH-NFD----V---V-----IWAAVIGF 75 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~~~~-~f~----~---~-----~wv~~~~~ 75 (693)
+.+||.+...+.+...+.. ++. ++..++|+.|+||||+|+.+++....... ... | . ...++.+.
T Consensus 14 deiiGqe~v~~~L~~~I~~--grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~el 91 (535)
T PRK08451 14 DELIGQESVSKTLSLALDN--NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEM 91 (535)
T ss_pred HHccCcHHHHHHHHHHHHc--CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEe
Confidence 6799999999999999876 444 45689999999999999999887621110 000 0 0 00011111
Q ss_pred CCchhhhhhchhHHHHHHHHH----HccCcEEEEEeCcccccc--hhhh----------hhhhhcccc-hhhhhhcCC--
Q 042597 76 SDDKKWKEKSLQDKAADISSI----LSRKKFVLLLDDIWERID--LKEL----------VSLFLTTRS-VDVCDQMDA-- 136 (693)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlvlDdv~~~~~--~~~~----------~~iliTtr~-~~~~~~~~~-- 136 (693)
.. ......++....+... ..+++-++|+|+++.... ...+ .++|++|.+ ..+......
T Consensus 92 da---as~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc 168 (535)
T PRK08451 92 DA---ASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRT 168 (535)
T ss_pred cc---ccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhc
Confidence 11 0011122222222110 124556889999987642 2233 334444443 333322222
Q ss_pred ceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHH
Q 042597 137 EKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVG 190 (693)
Q Consensus 137 ~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~ 190 (693)
..+++.+++.++....+.+.+...+...+ ++.+..|++.++|.+.-+....
T Consensus 169 ~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~---~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 169 QHFRFKQIPQNSIISHLKTILEKEGVSYE---PEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred eeEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCcHHHHHHHH
Confidence 23899999999999999887765543222 6788999999999985555444
No 117
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.21 E-value=6.2e-05 Score=79.95 Aligned_cols=170 Identities=16% Similarity=0.194 Sum_probs=99.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHccCcEEEEEeCcccc
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILSRKKFVLLLDDIWER 112 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~ 112 (693)
...+.|+|++|+|||.|++++++.. ..+..-..++++++.++.. ...... .......+.+.+++ .-+++|||++..
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l-~~~~~~~~v~yi~~~~~~~-~~~~~~-~~~~~~~~~~~~~~-~dlLiiDDi~~l 211 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI-LENNPNAKVVYVSSEKFTN-DFVNAL-RNNKMEEFKEKYRS-VDLLLIDDIQFL 211 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCCcEEEEEHHHHHH-HHHHHH-HcCCHHHHHHHHHh-CCEEEEehhhhh
Confidence 4578999999999999999999987 2222223456665532211 000000 00112223333433 237889999854
Q ss_pred cch----hhh-----------hhhhhcccch---------hhhhhcCCc-eEEeccCCchHHHHHHHHHhhcccCCCCCC
Q 042597 113 IDL----KEL-----------VSLFLTTRSV---------DVCDQMDAE-KLEVYSLANDEAWKLFQEMVDRSTLGSHTS 167 (693)
Q Consensus 113 ~~~----~~~-----------~~iliTtr~~---------~~~~~~~~~-~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~ 167 (693)
..- +.+ ..+|+|+... .+..++... .+.+.+.+.++-.+++.+.+.......+
T Consensus 212 ~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~-- 289 (405)
T TIGR00362 212 AGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELP-- 289 (405)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC--
Confidence 221 111 4577776532 122333333 2889999999999999998876553333
Q ss_pred hHHHHHHHHHHhCCcchHHHHHHHHHh-------cCCChhHHHHHHHHH
Q 042597 168 IPELAETLARECSGLPLALKTVGRAMK-------SQTKVGDWQRAIKKM 209 (693)
Q Consensus 168 ~~~~~~~I~~~~~G~Plal~~~~~~l~-------~~~~~~~~~~~l~~l 209 (693)
++.++.|++.+.|....+.-+-..+. ..-+.+..++++...
T Consensus 290 -~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 290 -DEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred -HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 67889999999988765544333221 123455666666544
No 118
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.20 E-value=1.5e-05 Score=79.11 Aligned_cols=144 Identities=16% Similarity=0.188 Sum_probs=77.7
Q ss_pred CcccchHHHHHHHHHH---hhh----------cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE--ec
Q 042597 10 HTVVGQELLLYRVWRC---ITD----------QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV--IG 74 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~---l~~----------~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~--~~ 74 (693)
..+||.+...+++.+. ... ..+....+.++|++|+||||+|+.+++.... .+.-....++.+ .+
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~-~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKE-MNVLSKGHLIEVERAD 84 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHh-cCcccCCceEEecHHH
Confidence 3588988877666544 311 0234567899999999999999999887511 111111112222 11
Q ss_pred cCCchhhhhhchhHHHHHHHHHHc-cCcEEEEEeCccccc----------chhhh----------hhhhhcccchh----
Q 042597 75 FSDDKKWKEKSLQDKAADISSILS-RKKFVLLLDDIWERI----------DLKEL----------VSLFLTTRSVD---- 129 (693)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~~----------~~~~~----------~~iliTtr~~~---- 129 (693)
... ....+....+++.++ ...-++++|+++... ....+ ..+++++....
T Consensus 85 l~~------~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~ 158 (261)
T TIGR02881 85 LVG------EYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYF 158 (261)
T ss_pred hhh------hhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHH
Confidence 111 001111112222222 123488999998632 12222 13444443322
Q ss_pred ------hhhhcCCceEEeccCCchHHHHHHHHHhhccc
Q 042597 130 ------VCDQMDAEKLEVYSLANDEAWKLFQEMVDRST 161 (693)
Q Consensus 130 ------~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~ 161 (693)
+..++ ...+.+++++.+|..+++.+.+....
T Consensus 159 ~~~~p~L~sRf-~~~i~f~~~~~~el~~Il~~~~~~~~ 195 (261)
T TIGR02881 159 LSLNPGLRSRF-PISIDFPDYTVEELMEIAERMVKERE 195 (261)
T ss_pred HhcChHHHhcc-ceEEEECCCCHHHHHHHHHHHHHHcC
Confidence 12222 22388999999999999998876544
No 119
>PRK06620 hypothetical protein; Validated
Probab=98.20 E-value=2.7e-05 Score=74.16 Aligned_cols=126 Identities=14% Similarity=0.100 Sum_probs=78.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHccCcEEEEEeCccccc
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILSRKKFVLLLDDIWERI 113 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~ 113 (693)
+.+.|+|++|+|||+|++.+++.. .. .++.. . .. .. +..+ ..-++++||++..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~-----~~~~~--~----~~----~~-------~~~~-~~d~lliDdi~~~~ 98 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NA-----YIIKD--I----FF----NE-------EILE-KYNAFIIEDIENWQ 98 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CC-----EEcch--h----hh----ch-------hHHh-cCCEEEEeccccch
Confidence 679999999999999999987765 11 11110 0 00 00 1112 23478889998543
Q ss_pred c--hhhh--------hhhhhcccchh-------hhhhcCCc-eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHH
Q 042597 114 D--LKEL--------VSLFLTTRSVD-------VCDQMDAE-KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETL 175 (693)
Q Consensus 114 ~--~~~~--------~~iliTtr~~~-------~~~~~~~~-~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I 175 (693)
+ +..+ ..||+|++... +..++... .+.+.+++.++...++.+.+...+...+ ++.++-|
T Consensus 99 ~~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~---~ev~~~L 175 (214)
T PRK06620 99 EPALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTIS---RQIIDFL 175 (214)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHH
Confidence 2 1111 45777776432 33344444 3899999999998898888765543333 6788888
Q ss_pred HHHhCCcchHHHH
Q 042597 176 ARECSGLPLALKT 188 (693)
Q Consensus 176 ~~~~~G~Plal~~ 188 (693)
++.+.|.-..+.-
T Consensus 176 ~~~~~~d~r~l~~ 188 (214)
T PRK06620 176 LVNLPREYSKIIE 188 (214)
T ss_pred HHHccCCHHHHHH
Confidence 8888776544443
No 120
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.20 E-value=6.6e-07 Score=86.94 Aligned_cols=239 Identities=18% Similarity=0.140 Sum_probs=124.1
Q ss_pred cccccccceeeeccccchh-----h-ccCCCCCccceeecccc----ccccccc------cccCCCCcccEEEccCCcch
Q 042597 335 VQEWEGAKRVSLMDNRILR-----L-LEIPTCSRLITLLLYEN----WIEEITD------GFFQPMSSLRVLALGRNFFL 398 (693)
Q Consensus 335 ~~~~~~l~~l~l~~~~~~~-----~-~~~~~~~~L~~L~l~~~----~l~~~~~------~~~~~l~~L~~L~L~~~~~~ 398 (693)
......++.+.+++|.+-. + ..+.+.++|+..++++- ...++|+ ..+-.+++|++||||+|-.-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 3344667777777776522 1 12555567777766643 1112221 11334567777777777332
Q ss_pred hhch----HhhhccccccEEeeCCCCCCccC--------------hhhhcCCCCcEeccCCcccccccccc----cccCC
Q 042597 399 SKLR----SGIANLVSLHHLDLSSTNITGLP--------------QDLKALEKLRYLNLDHAYKLSIIPHK----LKSGF 456 (693)
Q Consensus 399 ~~~p----~~~~~l~~L~~L~l~~~~i~~lp--------------~~~~~l~~L~~L~l~~~~~l~~~p~~----~~~~l 456 (693)
...+ .-+.++.+|+.|.|.+|.+.... +.+++-++|+++...+| .+..-+.. .+...
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN-RLENGGATALAEAFQSH 184 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc-ccccccHHHHHHHHHhc
Confidence 2322 22455677777777777654311 11345566777776666 44444421 13445
Q ss_pred CccccccccccCCCccccccCcccccCcchhHHhhccCCCCceeEEEeechhhHhhhhccchhhhhhcccccceeEeccc
Q 042597 457 SKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELENTNLEEMKIDST 536 (693)
Q Consensus 457 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~L~~L~i~~~ 536 (693)
+.|+.+.+..|.+... ...-....+...++|+++++..+....-.. ..+
T Consensus 185 ~~leevr~~qN~I~~e----------G~~al~eal~~~~~LevLdl~DNtft~egs----~~L----------------- 233 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPE----------GVTALAEALEHCPHLEVLDLRDNTFTLEGS----VAL----------------- 233 (382)
T ss_pred cccceEEEecccccCc----------hhHHHHHHHHhCCcceeeecccchhhhHHH----HHH-----------------
Confidence 6666666666654332 011233445555666666665443221110 000
Q ss_pred cccccccccccCCccEEEEeccccccch------h-hhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCc
Q 042597 537 EEVKKRFRSGFRSLNTVRVNGCKVKDLT------W-LVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQL 609 (693)
Q Consensus 537 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~------~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 609 (693)
....+.+++|+.|++++|.++.=. . -...|+|+.|.+.+|....+-... +. .+...-|.|
T Consensus 234 ----akaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~--------la-~~~~ek~dL 300 (382)
T KOG1909|consen 234 ----AKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALA--------LA-ACMAEKPDL 300 (382)
T ss_pred ----HHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHH--------HH-HHHhcchhh
Confidence 112245667888888888554421 1 112678888888887654432110 00 233446788
Q ss_pred ceeeccccc
Q 042597 610 EYLRILYGR 618 (693)
Q Consensus 610 ~~L~l~~~~ 618 (693)
..|++.+|.
T Consensus 301 ~kLnLngN~ 309 (382)
T KOG1909|consen 301 EKLNLNGNR 309 (382)
T ss_pred HHhcCCccc
Confidence 888887764
No 121
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.19 E-value=9e-06 Score=85.19 Aligned_cols=161 Identities=18% Similarity=0.251 Sum_probs=92.9
Q ss_pred CcccchHHHHHHHHHHhhhc-----------CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCc
Q 042597 10 HTVVGQELLLYRVWRCITDQ-----------EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDD 78 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 78 (693)
+.+.|+++.++++.+.+... -...+-|.++|++|+|||++|+++++.. ...| +.+...+...
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~~---i~v~~~~l~~- 203 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATF---IRVVGSELVQ- 203 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCCE---EEeehHHHhH-
Confidence 34779999999999876420 1345678999999999999999999976 2222 1121211110
Q ss_pred hhhhhhchhHHHHHHHHHH-ccCcEEEEEeCccccc------------c----hhhh------------hhhhhcccchh
Q 042597 79 KKWKEKSLQDKAADISSIL-SRKKFVLLLDDIWERI------------D----LKEL------------VSLFLTTRSVD 129 (693)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~------------~----~~~~------------~~iliTtr~~~ 129 (693)
.. ..........+.+.. ...+.+|+|||++... . +..+ ..||.||....
T Consensus 204 -~~-~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~ 281 (389)
T PRK03992 204 -KF-IGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRID 281 (389)
T ss_pred -hh-ccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChh
Confidence 00 001111222222222 3467899999998641 0 1111 23566665433
Q ss_pred hhhh--c---CCce-EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcc
Q 042597 130 VCDQ--M---DAEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLP 183 (693)
Q Consensus 130 ~~~~--~---~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 183 (693)
.... . .... +.++..+.++..++|+.++.......+. ....+++.+.|.-
T Consensus 282 ~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~----~~~~la~~t~g~s 337 (389)
T PRK03992 282 ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV----DLEELAELTEGAS 337 (389)
T ss_pred hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC----CHHHHHHHcCCCC
Confidence 2221 1 1222 8999999999999999877654322222 2466677776644
No 122
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=1.7e-05 Score=87.59 Aligned_cols=174 Identities=16% Similarity=0.189 Sum_probs=102.7
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhcccc--CCCCEE--E-----E-----EEEecc
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQ--HNFDVV--I-----W-----AAVIGF 75 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~--~~f~~~--~-----w-----v~~~~~ 75 (693)
+.+||.+..++.|..++... .-.+.+.++|+.|+||||+|+.+++...... ..++.+ . + .++.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i 94 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEG-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEM 94 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEE
Confidence 67999999999998888762 2235678999999999999999998762111 011000 0 0 000000
Q ss_pred CCchhhhhhchhHHHHHHHHHH-----ccCcEEEEEeCcccccc--hhhh----------hh-hhhcccchhhhhhcCCc
Q 042597 76 SDDKKWKEKSLQDKAADISSIL-----SRKKFVLLLDDIWERID--LKEL----------VS-LFLTTRSVDVCDQMDAE 137 (693)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~--~~~~----------~~-iliTtr~~~~~~~~~~~ 137 (693)
.. ......++ +..+.+.+ .+++-++|||+++.... ...+ .. |++|+....+.......
T Consensus 95 ~~---~~~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR 170 (585)
T PRK14950 95 DA---ASHTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSR 170 (585)
T ss_pred ec---cccCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhc
Confidence 00 00111111 12222222 24556899999986632 3333 23 34454444444332222
Q ss_pred --eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHH
Q 042597 138 --KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGR 191 (693)
Q Consensus 138 --~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~ 191 (693)
.+.+..++..+....+.+.+...+...+ .+.+..|++.++|.+..+.....
T Consensus 171 ~~~i~f~~l~~~el~~~L~~~a~~egl~i~---~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 171 CQRFDFHRHSVADMAAHLRKIAAAEGINLE---PGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred cceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 3888899999999888887765443222 57788999999998865554443
No 123
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.17 E-value=2.7e-05 Score=73.16 Aligned_cols=148 Identities=17% Similarity=0.176 Sum_probs=84.7
Q ss_pred HHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhcccc-------------------CCCCEEEEEEEeccCCchhh
Q 042597 22 VWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCHQQ-------------------HNFDVVIWAAVIGFSDDKKW 81 (693)
Q Consensus 22 l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~~~-------------------~~f~~~~wv~~~~~~~~~~~ 81 (693)
+.+.+.. ++. +.+.++|+.|+|||++|+.+.+...... .+.+.. ++.. .. ...
T Consensus 4 l~~~i~~--~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~-~~~~---~~-~~~ 76 (188)
T TIGR00678 4 LKRALEK--GRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLH-RLEP---EG-QSI 76 (188)
T ss_pred HHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEE-Eecc---cc-CcC
Confidence 4444443 444 6789999999999999999998872210 122221 1111 00 001
Q ss_pred hhhchhHHHHHHHHH-HccCcEEEEEeCcccccc--hhhh----------hhhhhcccc-hhhhhhcCC--ceEEeccCC
Q 042597 82 KEKSLQDKAADISSI-LSRKKFVLLLDDIWERID--LKEL----------VSLFLTTRS-VDVCDQMDA--EKLEVYSLA 145 (693)
Q Consensus 82 ~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~--~~~~----------~~iliTtr~-~~~~~~~~~--~~~~l~~l~ 145 (693)
......+....+... ..+.+-++|+||++.... ...+ ..+|++|++ ..+...... ..+.+.+++
T Consensus 77 ~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~ 156 (188)
T TIGR00678 77 KVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLS 156 (188)
T ss_pred CHHHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCC
Confidence 111111112222111 134566899999986632 3333 345555544 333222222 238999999
Q ss_pred chHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchH
Q 042597 146 NDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLA 185 (693)
Q Consensus 146 ~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla 185 (693)
.++..+++.+. + . + ++.+..|++.++|.|..
T Consensus 157 ~~~~~~~l~~~-g-i----~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 157 EEALLQWLIRQ-G-I----S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred HHHHHHHHHHc-C-C----C---HHHHHHHHHHcCCCccc
Confidence 99999988876 1 1 1 57799999999999853
No 124
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=5.5e-05 Score=81.11 Aligned_cols=168 Identities=13% Similarity=0.166 Sum_probs=103.1
Q ss_pred CcccchHHHHHHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhcccc--C----------------CCCEEEEE
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCHQQ--H----------------NFDVVIWA 70 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~~~--~----------------~f~~~~wv 70 (693)
..++|.+..+..+..++.. ++. +...++|+.|+||||+|+.++....... . .+..++++
T Consensus 16 ~diiGq~~i~~~L~~~i~~--~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ei 93 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKL--QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEI 93 (486)
T ss_pred HHccChHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEE
Confidence 6689999999999999976 344 4567899999999999999998762100 0 01112222
Q ss_pred EEeccCCchhhhhhchhHHHHHHHHHH-----ccCcEEEEEeCccccc--chhhh-----------hhhhhcccchhhhh
Q 042597 71 AVIGFSDDKKWKEKSLQDKAADISSIL-----SRKKFVLLLDDIWERI--DLKEL-----------VSLFLTTRSVDVCD 132 (693)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~--~~~~~-----------~~iliTtr~~~~~~ 132 (693)
+.... ...+ .+..+.+.. .+++-++|+|+++... ....+ .-|+.||+...+..
T Consensus 94 daas~--------~gvd-~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~ 164 (486)
T PRK14953 94 DAASN--------RGID-DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPP 164 (486)
T ss_pred eCccC--------CCHH-HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHH
Confidence 11100 0011 112222222 3556699999998663 23333 23344555444332
Q ss_pred hcC--CceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHH
Q 042597 133 QMD--AEKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGR 191 (693)
Q Consensus 133 ~~~--~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~ 191 (693)
... ...+.+.+++.++....+.+.+...+...+ .+.+..|+..++|.+..+.....
T Consensus 165 tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id---~~al~~La~~s~G~lr~al~~Ld 222 (486)
T PRK14953 165 TILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYE---EKALDLLAQASEGGMRDAASLLD 222 (486)
T ss_pred HHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 222 223889999999999999887765543222 57788999999998765554443
No 125
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=3.4e-05 Score=85.13 Aligned_cols=167 Identities=14% Similarity=0.185 Sum_probs=104.2
Q ss_pred CcccchHHHHHHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhcc--------------------ccCCCCEEE
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCH--------------------QQHNFDVVI 68 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~--------------------~~~~f~~~~ 68 (693)
+.+||.+..++.+..++.. ++. +...++|+.|+||||+|+.++..... ...+|+..
T Consensus 17 ~~viGq~~~~~~L~~~i~~--~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~- 93 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIAT--NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIH- 93 (614)
T ss_pred HHhcCcHHHHHHHHHHHHc--CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceE-
Confidence 6789999999999999876 444 55789999999999999998887621 01133321
Q ss_pred EEEEeccCCchhhhhhchhHHHHHHHHH-HccCcEEEEEeCcccccc--hhhh----------hh-hhhcccchhhhhhc
Q 042597 69 WAAVIGFSDDKKWKEKSLQDKAADISSI-LSRKKFVLLLDDIWERID--LKEL----------VS-LFLTTRSVDVCDQM 134 (693)
Q Consensus 69 wv~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~--~~~~----------~~-iliTtr~~~~~~~~ 134 (693)
.++..+ .....+..+.+..+... ..+++=++|+|+++.... ...+ .. |++|++...+....
T Consensus 94 ~ld~~~-----~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI 168 (614)
T PRK14971 94 ELDAAS-----NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTI 168 (614)
T ss_pred Eecccc-----cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHH
Confidence 221110 01011112222111110 123445889999987643 3333 23 44566655555544
Q ss_pred CCce--EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHH
Q 042597 135 DAEK--LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALK 187 (693)
Q Consensus 135 ~~~~--~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~ 187 (693)
.... +++.+++.++....+.+.+...+...+ .+.++.|+..++|...-+.
T Consensus 169 ~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~---~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 169 LSRCQIFDFNRIQVADIVNHLQYVASKEGITAE---PEALNVIAQKADGGMRDAL 220 (614)
T ss_pred HhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 4333 899999999999999887766543322 5678999999999775443
No 126
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.16 E-value=3.3e-05 Score=82.15 Aligned_cols=171 Identities=16% Similarity=0.177 Sum_probs=99.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHccCcEEEEEeCcccc
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILSRKKFVLLLDDIWER 112 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~ 112 (693)
...+.|+|++|+|||.|++++++.. .....-..++|++..++... ...... ......+++..+...-++++||++..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l-~~~~~~~~v~yi~~~~f~~~-~~~~~~-~~~~~~f~~~~~~~~dvLlIDDi~~l 206 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYV-VQNEPDLRVMYITSEKFLND-LVDSMK-EGKLNEFREKYRKKVDVLLIDDVQFL 206 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH-HHhCCCCeEEEEEHHHHHHH-HHHHHh-cccHHHHHHHHHhcCCEEEEechhhh
Confidence 4569999999999999999999987 22222235667765332110 000000 01112233333334558999999844
Q ss_pred cc---h-hhh-----------hhhhhccc-chh--------hhhhcCCce-EEeccCCchHHHHHHHHHhhcccCCCCCC
Q 042597 113 ID---L-KEL-----------VSLFLTTR-SVD--------VCDQMDAEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTS 167 (693)
Q Consensus 113 ~~---~-~~~-----------~~iliTtr-~~~--------~~~~~~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~ 167 (693)
.. . ..+ ..||+||. ++. +..++..+. +.+.+.+.+.-.+++++.+.......+
T Consensus 207 ~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~-- 284 (440)
T PRK14088 207 IGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELP-- 284 (440)
T ss_pred cCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCC--
Confidence 21 1 112 45777774 322 122233332 789999999999999988775543333
Q ss_pred hHHHHHHHHHHhCCcchHHHHHHHHHh-------cCCChhHHHHHHHHH
Q 042597 168 IPELAETLARECSGLPLALKTVGRAMK-------SQTKVGDWQRAIKKM 209 (693)
Q Consensus 168 ~~~~~~~I~~~~~G~Plal~~~~~~l~-------~~~~~~~~~~~l~~l 209 (693)
++.++.|++.+.|.-..+.-+-..+. ..-+.+..++++..+
T Consensus 285 -~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 285 -EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred -HHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 67888999998887655444433221 124566666666654
No 127
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.15 E-value=0.0003 Score=74.69 Aligned_cols=142 Identities=11% Similarity=0.147 Sum_probs=83.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHccCcEEEEEeCcccc
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILSRKKFVLLLDDIWER 112 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~ 112 (693)
...+.|+|+.|+|||+|++++++.. . ...-.++++....+.. ....... ......++...+ ..-++++||++..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l-~--~~~~~v~yi~~~~f~~-~~~~~l~-~~~~~~f~~~~~-~~dvLiIDDiq~l 214 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL-R--ESGGKILYVRSELFTE-HLVSAIR-SGEMQRFRQFYR-NVDALFIEDIEVF 214 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH-H--HcCCCEEEeeHHHHHH-HHHHHHh-cchHHHHHHHcc-cCCEEEEcchhhh
Confidence 4578999999999999999999987 2 2223345554422111 0000000 001122333333 3347888999765
Q ss_pred cc----hhhh-----------hhhhhcccch---------hhhhhcCCce-EEeccCCchHHHHHHHHHhhcccCCCCCC
Q 042597 113 ID----LKEL-----------VSLFLTTRSV---------DVCDQMDAEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTS 167 (693)
Q Consensus 113 ~~----~~~~-----------~~iliTtr~~---------~~~~~~~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~ 167 (693)
.. .+.+ ..||+||... .+..++..+. +.+.+++.++...++.+++...+...+
T Consensus 215 ~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~-- 292 (445)
T PRK12422 215 SGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIE-- 292 (445)
T ss_pred cCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCC--
Confidence 32 1111 4577777542 2233344333 889999999999999988876543333
Q ss_pred hHHHHHHHHHHhCCcc
Q 042597 168 IPELAETLARECSGLP 183 (693)
Q Consensus 168 ~~~~~~~I~~~~~G~P 183 (693)
++..+-|++.+.|.-
T Consensus 293 -~evl~~la~~~~~di 307 (445)
T PRK12422 293 -ETALDFLIEALSSNV 307 (445)
T ss_pred -HHHHHHHHHhcCCCH
Confidence 566777777776544
No 128
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=2.5e-07 Score=87.65 Aligned_cols=129 Identities=19% Similarity=0.099 Sum_probs=76.9
Q ss_pred ccceeeeccccchhh--c-cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhch--HhhhccccccEE
Q 042597 340 GAKRVSLMDNRILRL--L-EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLR--SGIANLVSLHHL 414 (693)
Q Consensus 340 ~l~~l~l~~~~~~~~--~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p--~~~~~l~~L~~L 414 (693)
.++++++++..++.- . -++.|.+|+.|.+.++.+.+-....+.+-.+|+.|+|+.|..+++.. --+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 466777777665432 1 25667888888888877765544446667778888888876665432 235677788888
Q ss_pred eeCCCCCCc--cChhhhc-CCCCcEeccCCcccccccc--cccccCCCccccccccccC
Q 042597 415 DLSSTNITG--LPQDLKA-LEKLRYLNLDHAYKLSIIP--HKLKSGFSKLEALRLLECG 468 (693)
Q Consensus 415 ~l~~~~i~~--lp~~~~~-l~~L~~L~l~~~~~l~~~p--~~~~~~l~~L~~L~l~~~~ 468 (693)
++++|.+.. +...+.. -++|..|+++||...-... ..+...+++|.+|++++|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence 888875443 2222222 2566777777663211110 1123456666677666664
No 129
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.14 E-value=2e-05 Score=88.62 Aligned_cols=146 Identities=15% Similarity=0.219 Sum_probs=85.5
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCC---CEEEEEE-EeccCCchhhhhhc
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNF---DVVIWAA-VIGFSDDKKWKEKS 85 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f---~~~~wv~-~~~~~~~~~~~~~~ 85 (693)
++++||++++.++++.|... ....+.++|++|+|||++|+.++.+.......+ ++.+|.. ...... ...-...
T Consensus 186 ~~liGR~~ei~~~i~iL~r~--~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~lla-G~~~~Ge 262 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA-GTKYRGD 262 (758)
T ss_pred CcCcCCCHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhc-ccchhhh
Confidence 57899999999999999873 345557899999999999999998762222121 3444431 111100 0000112
Q ss_pred hhHHHHHHHHHH-ccCcEEEEEeCcccc--------cchhh--h---------hhhhhcccchhhhh--------hcCCc
Q 042597 86 LQDKAADISSIL-SRKKFVLLLDDIWER--------IDLKE--L---------VSLFLTTRSVDVCD--------QMDAE 137 (693)
Q Consensus 86 ~~~~~~~l~~~l-~~~~~LlvlDdv~~~--------~~~~~--~---------~~iliTtr~~~~~~--------~~~~~ 137 (693)
.+.....+.+.+ +..+.+++||+++.. .+.+. + -++|.+|...++.. .....
T Consensus 263 ~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~~~~~~D~AL~rRFq 342 (758)
T PRK11034 263 FEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQ 342 (758)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHHHHhhccHHHHhhCc
Confidence 223333333333 346789999999854 11111 1 23444444333211 11223
Q ss_pred eEEeccCCchHHHHHHHHHhh
Q 042597 138 KLEVYSLANDEAWKLFQEMVD 158 (693)
Q Consensus 138 ~~~l~~l~~~e~~~l~~~~~~ 158 (693)
.+.+++.+.+++.+++.....
T Consensus 343 ~I~v~ePs~~~~~~IL~~~~~ 363 (758)
T PRK11034 343 KIDITEPSIEETVQIINGLKP 363 (758)
T ss_pred EEEeCCCCHHHHHHHHHHHHH
Confidence 489999999999999886543
No 130
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.13 E-value=0.00018 Score=77.85 Aligned_cols=170 Identities=16% Similarity=0.194 Sum_probs=99.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHccCcEEEEEeCcccc
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILSRKKFVLLLDDIWER 112 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~ 112 (693)
...+.|+|..|+|||.|++++++.. .....-..++|+...++... ......+.....+++.+++ -=+++|||++..
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a-~~~~~g~~V~Yitaeef~~e--l~~al~~~~~~~f~~~y~~-~DLLlIDDIq~l 389 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYA-RRLYPGTRVRYVSSEEFTNE--FINSIRDGKGDSFRRRYRE-MDILLVDDIQFL 389 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH-HHhCCCCeEEEeeHHHHHHH--HHHHHHhccHHHHHHHhhc-CCEEEEehhccc
Confidence 3458999999999999999999987 22222234567765332210 0000001111223333333 247889999755
Q ss_pred cc---h-hhh-----------hhhhhcccch---------hhhhhcCCce-EEeccCCchHHHHHHHHHhhcccCCCCCC
Q 042597 113 ID---L-KEL-----------VSLFLTTRSV---------DVCDQMDAEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTS 167 (693)
Q Consensus 113 ~~---~-~~~-----------~~iliTtr~~---------~~~~~~~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~ 167 (693)
.. + +.+ ..||||++.. .+..++.... +.+...+.+.-.+++.+++.......+
T Consensus 390 ~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~-- 467 (617)
T PRK14086 390 EDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAP-- 467 (617)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCC--
Confidence 22 1 111 4588887752 2333444444 899999999999999998877654444
Q ss_pred hHHHHHHHHHHhCCcchHHHHHHHHHh------c-CCChhHHHHHHHHH
Q 042597 168 IPELAETLARECSGLPLALKTVGRAMK------S-QTKVGDWQRAIKKM 209 (693)
Q Consensus 168 ~~~~~~~I~~~~~G~Plal~~~~~~l~------~-~~~~~~~~~~l~~l 209 (693)
.+.++-|++.+.+....|.-+...|. . ..+.+.-+.++..+
T Consensus 468 -~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl~la~~vL~~~ 515 (617)
T PRK14086 468 -PEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLRDL 515 (617)
T ss_pred -HHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 67778888887766544443333221 1 13445555566544
No 131
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=3.7e-05 Score=83.74 Aligned_cols=171 Identities=15% Similarity=0.191 Sum_probs=104.2
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhcccc-------------------CCCCEEEEE
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQ-------------------HNFDVVIWA 70 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~-------------------~~f~~~~wv 70 (693)
..+||.+..++.+..++... .-.+...++|+.|+||||+|+.+++...... .+++. +++
T Consensus 16 ~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv-~~i 93 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDV-IEI 93 (563)
T ss_pred HHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCe-EEe
Confidence 67999999999999999762 2335688999999999999999999872110 12221 111
Q ss_pred EEeccCCchhhhhhchhHHHHHHHH-HHccCcEEEEEeCcccccc--hhhh----------hh-hhhcccchhhhhhcCC
Q 042597 71 AVIGFSDDKKWKEKSLQDKAADISS-ILSRKKFVLLLDDIWERID--LKEL----------VS-LFLTTRSVDVCDQMDA 136 (693)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~~--~~~~----------~~-iliTtr~~~~~~~~~~ 136 (693)
+.. .........+....+.. -..+++-++|+|+++.... +..+ .. |++||....+......
T Consensus 94 dga-----s~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~S 168 (563)
T PRK06647 94 DGA-----SNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKS 168 (563)
T ss_pred cCc-----ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHH
Confidence 110 00001111111111111 1235666899999987643 3333 23 3455554444433222
Q ss_pred c--eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHH
Q 042597 137 E--KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVG 190 (693)
Q Consensus 137 ~--~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~ 190 (693)
. .+++.+++.++..+.+.+.+...+...+ ++.+..|++.++|.+..+....
T Consensus 169 Rc~~~~f~~l~~~el~~~L~~i~~~egi~id---~eAl~lLa~~s~GdlR~alslL 221 (563)
T PRK06647 169 RCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE---DEALKWIAYKSTGSVRDAYTLF 221 (563)
T ss_pred hceEEEecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 2 3889999999999998887765443222 6788889999999886554443
No 132
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=5.2e-05 Score=83.03 Aligned_cols=168 Identities=16% Similarity=0.184 Sum_probs=102.5
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccC--------------------CCCEEEE
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQH--------------------NFDVVIW 69 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~--------------------~f~~~~w 69 (693)
+.+||.+..++.+..++... .-.+...++|+.|+||||+|+.+++.. ...+ +++. +.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~-~~~hayLf~Gp~GtGKTt~Ak~lAkal-~c~~~~~~~pC~~C~~C~~i~~g~~~dv-~e 92 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQG-KISHAYLFSGPRGTGKTSAAKIFAKAV-NCLNPPDGEPCNECEICKAITNGSLMDV-IE 92 (559)
T ss_pred HhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHh-cCCCCCCCCCCCccHHHHHHhcCCCCCe-EE
Confidence 67999999999999999772 223556789999999999999998876 2211 1221 11
Q ss_pred EEEeccCCchhhhhhchhHHHHHHHHH-HccCcEEEEEeCccccc--chhhh-----------hhhhhcccchhhhhhcC
Q 042597 70 AAVIGFSDDKKWKEKSLQDKAADISSI-LSRKKFVLLLDDIWERI--DLKEL-----------VSLFLTTRSVDVCDQMD 135 (693)
Q Consensus 70 v~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~--~~~~~-----------~~iliTtr~~~~~~~~~ 135 (693)
++... ........+....+... ..++.-++|||+++... ....+ .-|+.||....+.....
T Consensus 93 idaas-----~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~ 167 (559)
T PRK05563 93 IDAAS-----NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATIL 167 (559)
T ss_pred eeccc-----cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHH
Confidence 21110 00011111222211110 13456688999998663 23333 22445555554443332
Q ss_pred Cc--eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHH
Q 042597 136 AE--KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKT 188 (693)
Q Consensus 136 ~~--~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~ 188 (693)
.+ .+.+.+++.++....+.+.+...+...+ .+.+..|++.++|.+.-+..
T Consensus 168 SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~---~~al~~ia~~s~G~~R~al~ 219 (559)
T PRK05563 168 SRCQRFDFKRISVEDIVERLKYILDKEGIEYE---DEALRLIARAAEGGMRDALS 219 (559)
T ss_pred hHheEEecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCCHHHHHH
Confidence 22 3888899999999998887765442222 57788999999998754443
No 133
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.10 E-value=2.6e-05 Score=90.21 Aligned_cols=146 Identities=11% Similarity=0.190 Sum_probs=85.0
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCC---CCEEEE-EEEeccCCchhhhhhc
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHN---FDVVIW-AAVIGFSDDKKWKEKS 85 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~---f~~~~w-v~~~~~~~~~~~~~~~ 85 (693)
+++|||++++.+++..|.. .....+.++|++|+|||++|..++.+....... ....+| +++..... .......
T Consensus 173 ~~~igr~~ei~~~~~~l~r--~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a-~~~~~g~ 249 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSR--RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIA-GAKYRGE 249 (852)
T ss_pred CcCCCcHHHHHHHHHHHhc--CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhh-cchhhhh
Confidence 6799999999999999977 344566689999999999999999987221100 122222 33221111 0111112
Q ss_pred hhHHHHHHHHHHc--cCcEEEEEeCcccccc---------hhhh---------hhhh-hcccchh---h----hhhcCCc
Q 042597 86 LQDKAADISSILS--RKKFVLLLDDIWERID---------LKEL---------VSLF-LTTRSVD---V----CDQMDAE 137 (693)
Q Consensus 86 ~~~~~~~l~~~l~--~~~~LlvlDdv~~~~~---------~~~~---------~~il-iTtr~~~---~----~~~~~~~ 137 (693)
.+..+..+.+.+. +++.++++|+++.... ...+ .++| .||.++. + +-.....
T Consensus 250 ~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~ 329 (852)
T TIGR03346 250 FEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQ 329 (852)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHHHhhcCHHHHhcCC
Confidence 2333333333332 4689999999985521 1111 2334 4444432 1 1111223
Q ss_pred eEEeccCCchHHHHHHHHHhh
Q 042597 138 KLEVYSLANDEAWKLFQEMVD 158 (693)
Q Consensus 138 ~~~l~~l~~~e~~~l~~~~~~ 158 (693)
.+.+...+.++..+++.....
T Consensus 330 ~i~v~~p~~~~~~~iL~~~~~ 350 (852)
T TIGR03346 330 PVFVDEPTVEDTISILRGLKE 350 (852)
T ss_pred EEEeCCCCHHHHHHHHHHHHH
Confidence 388888999999998876543
No 134
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.09 E-value=3.7e-05 Score=88.51 Aligned_cols=145 Identities=13% Similarity=0.188 Sum_probs=84.0
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccC----CCCEEEEEEEeccCCchhhhhhc
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQH----NFDVVIWAAVIGFSDDKKWKEKS 85 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~~ 85 (693)
+++|||+.++..+++.|.. .....+.++|++|+|||++|..++.+...... +-..++++++..... .......
T Consensus 178 ~~vigr~~ei~~~i~iL~r--~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~a-g~~~~g~ 254 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQR--RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA-GAKYRGE 254 (857)
T ss_pred CcCCCCHHHHHHHHHHHhc--CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhh-ccchhhh
Confidence 6799999999999999987 44556779999999999999999998732110 011223333322211 1111112
Q ss_pred hhHHHHHHHHHH--ccCcEEEEEeCcccccc---------hhhh---------hhhh-hcccchh---h----hhhcCCc
Q 042597 86 LQDKAADISSIL--SRKKFVLLLDDIWERID---------LKEL---------VSLF-LTTRSVD---V----CDQMDAE 137 (693)
Q Consensus 86 ~~~~~~~l~~~l--~~~~~LlvlDdv~~~~~---------~~~~---------~~il-iTtr~~~---~----~~~~~~~ 137 (693)
.+..+..+.+.+ .+.++++++|+++.... ...+ -++| -||.++. . +-.....
T Consensus 255 ~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~ 334 (857)
T PRK10865 255 FEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQ 334 (857)
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHHHhhhcHHHHhhCC
Confidence 222333333222 25789999999986531 1111 2344 4444432 0 1111222
Q ss_pred eEEeccCCchHHHHHHHHHh
Q 042597 138 KLEVYSLANDEAWKLFQEMV 157 (693)
Q Consensus 138 ~~~l~~l~~~e~~~l~~~~~ 157 (693)
.+.+...+.++...+++...
T Consensus 335 ~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 335 KVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred EEEeCCCCHHHHHHHHHHHh
Confidence 36777778888888886554
No 135
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=5.4e-05 Score=83.27 Aligned_cols=168 Identities=14% Similarity=0.176 Sum_probs=102.7
Q ss_pred CcccchHHHHHHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhccccC--------------------CCCEEE
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCHQQH--------------------NFDVVI 68 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~~~~--------------------~f~~~~ 68 (693)
+.+||.+..+..+..++.. ++. +...++|+.|+||||+|+.+++.. ...+ +++. +
T Consensus 16 ~~iiGq~~v~~~L~~~i~~--~~~~hayLf~Gp~G~GKtt~A~~lak~l-~c~~~~~~~~c~~c~~c~~i~~g~~~d~-~ 91 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDT--GRVAHAFLFTGARGVGKTSTARILAKAL-NCEQGLTAEPCNVCPPCVEITEGRSVDV-F 91 (576)
T ss_pred HHccCcHHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHhh-cCCCCCCCCCCCccHHHHHHhcCCCCCe-e
Confidence 6799999999999999876 444 556899999999999999999876 2111 1111 1
Q ss_pred EEEEeccCCchhhhhhchhHHHHHHHHH-HccCcEEEEEeCcccccc--hhhh-----------hhhhhcccchhhhhhc
Q 042597 69 WAAVIGFSDDKKWKEKSLQDKAADISSI-LSRKKFVLLLDDIWERID--LKEL-----------VSLFLTTRSVDVCDQM 134 (693)
Q Consensus 69 wv~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~~~--~~~~-----------~~iliTtr~~~~~~~~ 134 (693)
.++.. ......+..++...+... ..+++=++|||+++.... ...+ .-|++||....+....
T Consensus 92 eid~~-----s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 92 EIDGA-----SNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred eeecc-----CccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 11110 001111112222222111 123445789999987642 3333 2344566665555443
Q ss_pred CCce--EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcch-HHHHH
Q 042597 135 DAEK--LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPL-ALKTV 189 (693)
Q Consensus 135 ~~~~--~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl-al~~~ 189 (693)
.... +++.+++.++....+...+...+...+ .+.+..|++.++|... ++..+
T Consensus 167 ~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~---~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 167 LSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS---DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 3333 888999999999888877665443222 6778899999999764 44444
No 136
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.0001 Score=81.39 Aligned_cols=177 Identities=13% Similarity=0.123 Sum_probs=103.1
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCC------EEEEE----------EEe
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFD------VVIWA----------AVI 73 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~------~~~wv----------~~~ 73 (693)
..++|.+..+..|..++... .-.+.+.++|+.|+||||+|+.+++... ...... +.... ++.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~-c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ 93 (620)
T PRK14948 16 DELVGQEAIATTLKNALISN-RIAPAYLFTGPRGTGKTSSARILAKSLN-CLNSDKPTPEPCGKCELCRAIAAGNALDVI 93 (620)
T ss_pred hhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCChHHHHHHHHHHhc-CCCcCCCCCCCCcccHHHHHHhcCCCccEE
Confidence 56899999999999998762 1236788999999999999999999872 211100 00000 000
Q ss_pred ccCCchhhhhhchhHHHHHHHH-HHccCcEEEEEeCcccccc--hhhh----------h-hhhhcccchhhhhhcCCce-
Q 042597 74 GFSDDKKWKEKSLQDKAADISS-ILSRKKFVLLLDDIWERID--LKEL----------V-SLFLTTRSVDVCDQMDAEK- 138 (693)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlvlDdv~~~~~--~~~~----------~-~iliTtr~~~~~~~~~~~~- 138 (693)
+.............+.+..+.. -..+++-++|||+++.... ...+ . -|++|+....+........
T Consensus 94 ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~ 173 (620)
T PRK14948 94 EIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQ 173 (620)
T ss_pred EEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhhee
Confidence 1100000111111222211110 0124556889999997642 3333 2 2445555444444333333
Q ss_pred -EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHH
Q 042597 139 -LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGR 191 (693)
Q Consensus 139 -~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~ 191 (693)
+++..++.++....+.+.+...+...+ .+.+..|++.++|.+..+..+..
T Consensus 174 ~~~f~~l~~~ei~~~L~~ia~kegi~is---~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 174 RFDFRRIPLEAMVQHLSEIAEKESIEIE---PEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred EEEecCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 788899999988888877765432222 46789999999998865544443
No 137
>PTZ00202 tuzin; Provisional
Probab=98.05 E-value=5.3e-05 Score=77.13 Aligned_cols=52 Identities=19% Similarity=0.241 Sum_probs=43.1
Q ss_pred cCCC-CcccchHHHHHHHHHHhhhcC-CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 6 LPVD-HTVVGQELLLYRVWRCITDQE-KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 6 ~p~~-~~~vGr~~~~~~l~~~l~~~~-~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+|.+ +.|+||+.++..+...|...+ +..++++|+|++|+||||+++.+....
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence 4443 789999999999999997532 334699999999999999999999765
No 138
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.05 E-value=2.3e-05 Score=82.29 Aligned_cols=161 Identities=17% Similarity=0.225 Sum_probs=91.9
Q ss_pred CcccchHHHHHHHHHHhhh---c--------CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCc
Q 042597 10 HTVVGQELLLYRVWRCITD---Q--------EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDD 78 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~---~--------~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 78 (693)
..+.|.+..++++.+.+.- . -...+-+.++|++|+|||++|+.+++.. ...| +.+...+...
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el---~~~f---i~V~~seL~~- 255 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET---SATF---LRVVGSELIQ- 255 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh---CCCE---EEEecchhhh-
Confidence 4467899999998888742 0 1234568899999999999999999976 3333 1121111111
Q ss_pred hhhhhhchhHHHHHH-HHHHccCcEEEEEeCcccccc----------------hhhh------------hhhhhcccchh
Q 042597 79 KKWKEKSLQDKAADI-SSILSRKKFVLLLDDIWERID----------------LKEL------------VSLFLTTRSVD 129 (693)
Q Consensus 79 ~~~~~~~~~~~~~~l-~~~l~~~~~LlvlDdv~~~~~----------------~~~~------------~~iliTtr~~~ 129 (693)
.... ........+ .....+.+.+++||+++.... +..+ ..||+||....
T Consensus 256 -k~~G-e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d 333 (438)
T PTZ00361 256 -KYLG-DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 333 (438)
T ss_pred -hhcc-hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChH
Confidence 0000 111112222 222245788999999864310 0011 24666666544
Q ss_pred hhhhc-----CCce-EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcc
Q 042597 130 VCDQM-----DAEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLP 183 (693)
Q Consensus 130 ~~~~~-----~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 183 (693)
..... .... +.++..+.++..++|..++.......+.+ ...++..+.|.-
T Consensus 334 ~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvd----l~~la~~t~g~s 389 (438)
T PTZ00361 334 SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVD----LEEFIMAKDELS 389 (438)
T ss_pred HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcC----HHHHHHhcCCCC
Confidence 33221 1222 89999999999999998776544332222 345555665544
No 139
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.02 E-value=6.8e-06 Score=77.11 Aligned_cols=47 Identities=28% Similarity=0.395 Sum_probs=33.8
Q ss_pred cccchHHHHHHHHHHhhh-cCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 11 TVVGQELLLYRVWRCITD-QEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 11 ~~vGr~~~~~~l~~~l~~-~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.||||+++++++...+.. .....+.+.|+|++|+|||+++++++.+.
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999953 23557999999999999999999999998
No 140
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.02 E-value=6.1e-05 Score=83.50 Aligned_cols=46 Identities=30% Similarity=0.338 Sum_probs=39.1
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+.++|++..+..+...+.. .....+.|+|++|+||||+|+.+++..
T Consensus 154 ~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred HhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 6789999999988877754 455689999999999999999998765
No 141
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=3.6e-05 Score=75.58 Aligned_cols=166 Identities=18% Similarity=0.256 Sum_probs=101.0
Q ss_pred ccchHHHHHHHHHHhhh-----------cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchh
Q 042597 12 VVGQELLLYRVWRCITD-----------QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKK 80 (693)
Q Consensus 12 ~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 80 (693)
.=|-++.+++|.+.+.- +=+..+=|.+||++|.|||-||++|+++- ... |+.+ .. ..
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T---~At-----FIrv---vg-SE 220 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT---DAT-----FIRV---VG-SE 220 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc---Cce-----EEEe---cc-HH
Confidence 45678888888888642 11456778999999999999999999986 332 2333 11 33
Q ss_pred hhhhchhHHHHHHHHHH----ccCcEEEEEeCcccccc----------------hhhh------------hhhhhcccch
Q 042597 81 WKEKSLQDKAADISSIL----SRKKFVLLLDDIWERID----------------LKEL------------VSLFLTTRSV 128 (693)
Q Consensus 81 ~~~~~~~~~~~~l~~~l----~~~~~LlvlDdv~~~~~----------------~~~~------------~~iliTtr~~ 128 (693)
..+....+....+++.+ +...+.|++|+++.... .-++ .+||+.|-..
T Consensus 221 lVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~ 300 (406)
T COG1222 221 LVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRP 300 (406)
T ss_pred HHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCc
Confidence 34444444444444433 34789999999875411 0011 6788877766
Q ss_pred hhhhh--cC---Cce-EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcc----hHHHHHHHHH
Q 042597 129 DVCDQ--MD---AEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLP----LALKTVGRAM 193 (693)
Q Consensus 129 ~~~~~--~~---~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P----lal~~~~~~l 193 (693)
+++.. .+ .+. ++++--+.+.-.++|.-|+.......+.+ .+.+++.+.|.- -|+.+=|+++
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGAdlkaictEAGm~ 371 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGADLKAICTEAGMF 371 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchHHHHHHHHHHhHH
Confidence 55433 22 222 77775555555668887776655443333 456667776655 4555556543
No 142
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.02 E-value=2.7e-05 Score=75.51 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=34.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
+...++|.|++|+|||||++++++.. . ..+|+.++|+.+
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l-~-~~~fdv~~~v~v 53 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAI-T-KNHPEVYLIVLL 53 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc-c-cccCCeEEEEEE
Confidence 45789999999999999999999987 3 238999999986
No 143
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.99 E-value=0.00032 Score=66.37 Aligned_cols=88 Identities=20% Similarity=0.270 Sum_probs=58.9
Q ss_pred CcccchHHHHHHHHHHhhh--cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchh
Q 042597 10 HTVVGQELLLYRVWRCITD--QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQ 87 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~--~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~ 87 (693)
+.++|.+...+.+.+=... .+.....|.+||..|.|||++++++.+.. ..++ ..+.+. ....-.++.
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y-~~~G-------LRlIev---~k~~L~~l~ 95 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEY-ADQG-------LRLIEV---SKEDLGDLP 95 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHH-hhcC-------ceEEEE---CHHHhccHH
Confidence 6699999999888765443 23566788899999999999999999987 2222 112222 222333344
Q ss_pred HHHHHHHHHHccCcEEEEEeCcc
Q 042597 88 DKAADISSILSRKKFVLLLDDIW 110 (693)
Q Consensus 88 ~~~~~l~~~l~~~~~LlvlDdv~ 110 (693)
.+...++. +..||+|++||..
T Consensus 96 ~l~~~l~~--~~~kFIlf~DDLs 116 (249)
T PF05673_consen 96 ELLDLLRD--RPYKFILFCDDLS 116 (249)
T ss_pred HHHHHHhc--CCCCEEEEecCCC
Confidence 44444442 4579999999974
No 144
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.99 E-value=2.3e-05 Score=80.18 Aligned_cols=54 Identities=20% Similarity=0.375 Sum_probs=28.4
Q ss_pred cccccEEeeCCCCCCccChhhhcCCCCcEeccCCcccccccccccccCCCcccccccccc
Q 042597 408 LVSLHHLDLSSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLEC 467 (693)
Q Consensus 408 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~ 467 (693)
+.+++.|++++|.++.+|. -..+|+.|++++|..+..+|..+ ..+|++|.+.+|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCc
Confidence 4555555555555555551 22345666666555555555431 235566666555
No 145
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.95 E-value=3.3e-05 Score=78.25 Aligned_cols=42 Identities=17% Similarity=0.179 Sum_probs=35.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEecc
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGF 75 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~ 75 (693)
+-+..+|+|++|+||||||+++|+.. . ..+|++++|+.+.+.
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I-~-~nhFDv~~~VvLIgE 209 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSI-T-TNHPEVHLIVLLIDE 209 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHH-H-hhcCCeEEEEEEeCC
Confidence 45788999999999999999999987 3 238999999988433
No 146
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.95 E-value=7.5e-05 Score=77.92 Aligned_cols=161 Identities=17% Similarity=0.239 Sum_probs=91.2
Q ss_pred CcccchHHHHHHHHHHhhh---c--------CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCc
Q 042597 10 HTVVGQELLLYRVWRCITD---Q--------EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDD 78 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~---~--------~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 78 (693)
..+.|.+...+++.+.+.- . -...+-+.++|++|+|||++|+.+++.. ...| +.+.......
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l---~~~f---i~i~~s~l~~- 217 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT---TATF---IRVVGSEFVQ- 217 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEehHHHHH-
Confidence 4578999888888887641 0 1245778999999999999999999976 3322 1121111100
Q ss_pred hhhhhhchhHHHHHH-HHHHccCcEEEEEeCccccc------------ch----hhh------------hhhhhcccchh
Q 042597 79 KKWKEKSLQDKAADI-SSILSRKKFVLLLDDIWERI------------DL----KEL------------VSLFLTTRSVD 129 (693)
Q Consensus 79 ~~~~~~~~~~~~~~l-~~~l~~~~~LlvlDdv~~~~------------~~----~~~------------~~iliTtr~~~ 129 (693)
.... ........+ .......+.++++|+++... .. ..+ ..||+||....
T Consensus 218 -k~~g-e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d 295 (398)
T PTZ00454 218 -KYLG-EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRAD 295 (398)
T ss_pred -Hhcc-hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCch
Confidence 0000 011112222 22234578999999987431 01 111 23666666543
Q ss_pred hhhh--c---CCce-EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcc
Q 042597 130 VCDQ--M---DAEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLP 183 (693)
Q Consensus 130 ~~~~--~---~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 183 (693)
.... . .... +.++..+.++..++|+.+........+. ...++++.+.|..
T Consensus 296 ~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv----d~~~la~~t~g~s 351 (398)
T PTZ00454 296 TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV----DLEDFVSRPEKIS 351 (398)
T ss_pred hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc----CHHHHHHHcCCCC
Confidence 3221 1 2222 8888888888888888776544322222 2456667776654
No 147
>CHL00181 cbbX CbbX; Provisional
Probab=97.95 E-value=0.00013 Score=72.97 Aligned_cols=143 Identities=12% Similarity=0.194 Sum_probs=76.6
Q ss_pred cccchHHHHHHHHHHhh---hc----------CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCC--CEEEEEEEecc
Q 042597 11 TVVGQELLLYRVWRCIT---DQ----------EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNF--DVVIWAAVIGF 75 (693)
Q Consensus 11 ~~vGr~~~~~~l~~~l~---~~----------~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f--~~~~wv~~~~~ 75 (693)
.++|.+...++|.++.. .. .+....+.++|++|+|||++|+.+++.. ...+.- ...+.++....
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~-~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADIL-YKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH-HHcCCCCCCceEEecHHHH
Confidence 57888777776655431 10 1233468899999999999999998875 211111 11222221111
Q ss_pred CCchhhhhhchhHHHHHHHHHHc-cCcEEEEEeCccccc-----------chhhh----------hhhhhcccchhh---
Q 042597 76 SDDKKWKEKSLQDKAADISSILS-RKKFVLLLDDIWERI-----------DLKEL----------VSLFLTTRSVDV--- 130 (693)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~~-----------~~~~~----------~~iliTtr~~~~--- 130 (693)
.. ...... . ....+.++ ...-+++||+++... ....+ .+||+++.....
T Consensus 103 ~~--~~~g~~-~---~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~ 176 (287)
T CHL00181 103 VG--QYIGHT-A---PKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKF 176 (287)
T ss_pred HH--HHhccc-h---HHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHH
Confidence 00 000000 1 11122221 123489999997531 11111 245555543222
Q ss_pred -------hhhcCCceEEeccCCchHHHHHHHHHhhccc
Q 042597 131 -------CDQMDAEKLEVYSLANDEAWKLFQEMVDRST 161 (693)
Q Consensus 131 -------~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~ 161 (693)
..++ ...+.+++++.+|..+++.+.+....
T Consensus 177 ~~~np~L~sR~-~~~i~F~~~t~~el~~I~~~~l~~~~ 213 (287)
T CHL00181 177 YESNPGLSSRI-ANHVDFPDYTPEELLQIAKIMLEEQQ 213 (287)
T ss_pred HhcCHHHHHhC-CceEEcCCcCHHHHHHHHHHHHHHhc
Confidence 1111 22489999999999999988876554
No 148
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=8.5e-06 Score=55.26 Aligned_cols=38 Identities=45% Similarity=0.630 Sum_probs=19.8
Q ss_pred cccEEeeCCCCCCccChhhhcCCCCcEeccCCccccccc
Q 042597 410 SLHHLDLSSTNITGLPQDLKALEKLRYLNLDHAYKLSII 448 (693)
Q Consensus 410 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~ 448 (693)
+|++|++++|+|+++|+.+++|++|+.|++++| .+.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCC
Confidence 455555555555555555555555555555555 34443
No 149
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=9.5e-06 Score=55.03 Aligned_cols=40 Identities=30% Similarity=0.478 Sum_probs=30.7
Q ss_pred CcccEEEccCCcchhhchHhhhccccccEEeeCCCCCCccC
Q 042597 385 SSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTNITGLP 425 (693)
Q Consensus 385 ~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp 425 (693)
++|++|++++| .+..+|..++++++|++|++++|+++++|
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 46888888888 77778777888888888888888888765
No 150
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.94 E-value=0.00012 Score=67.25 Aligned_cols=93 Identities=17% Similarity=0.189 Sum_probs=59.6
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHH
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDK 89 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~ 89 (693)
...||-++.++.+.-.-.+ ++.+.+.|.||+|+||||-+..+++.. -....-+.++=.++ ..+.-.+..
T Consensus 27 ~dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~~LAr~L-LG~~~ke~vLELNA--------SdeRGIDvV 95 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSILCLAREL-LGDSYKEAVLELNA--------SDERGIDVV 95 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHHHHHHHH-hChhhhhHhhhccC--------ccccccHHH
Confidence 5689998888777665555 778999999999999999999999987 22222233322222 112223333
Q ss_pred HHHHHHHHc-------cCcEEEEEeCccccc
Q 042597 90 AADISSILS-------RKKFVLLLDDIWERI 113 (693)
Q Consensus 90 ~~~l~~~l~-------~~~~LlvlDdv~~~~ 113 (693)
...++.+-+ ++.=.+|||+++.+.
T Consensus 96 Rn~IK~FAQ~kv~lp~grhKIiILDEADSMT 126 (333)
T KOG0991|consen 96 RNKIKMFAQKKVTLPPGRHKIIILDEADSMT 126 (333)
T ss_pred HHHHHHHHHhhccCCCCceeEEEeeccchhh
Confidence 334433332 344578999999763
No 151
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=0.00059 Score=69.02 Aligned_cols=171 Identities=13% Similarity=0.167 Sum_probs=105.3
Q ss_pred CcccchHHHHHHHHHHhhhcCCC-eeEEEEEcCCCCcHHHHHHHHHhhhccc-------------cCCCCEEEEEEEecc
Q 042597 10 HTVVGQELLLYRVWRCITDQEKN-RRIIGLYGTGGVGKTTILTQVNNNFCHQ-------------QHNFDVVIWAAVIGF 75 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~-~~vv~i~G~~GiGKTtla~~~~~~~~~~-------------~~~f~~~~wv~~~~~ 75 (693)
+.++|.+...+.+...+.. ++ .+...++|+.|+||+++|..+++..-.. ..|.|.....+....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~--~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQ--NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHh--CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 4689999999999999877 44 4788999999999999999998876211 123333322221100
Q ss_pred CCc----hhh----------hhhchhHHHHHHHHHH-----ccCcEEEEEeCcccccc--hhhh---------h-hhhhc
Q 042597 76 SDD----KKW----------KEKSLQDKAADISSIL-----SRKKFVLLLDDIWERID--LKEL---------V-SLFLT 124 (693)
Q Consensus 76 ~~~----~~~----------~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~--~~~~---------~-~iliT 124 (693)
... ... ..... +.+..+.+.+ .+.+=++|+|+++.+.. ..++ . -|++|
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~i-d~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~ 160 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRL-EQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIA 160 (314)
T ss_pred cccccchhhhhhccccccccccCcH-HHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 000 000 00111 1223444444 34566899999987643 2222 2 34455
Q ss_pred ccchhhhhhcCCce--EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHH
Q 042597 125 TRSVDVCDQMDAEK--LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTV 189 (693)
Q Consensus 125 tr~~~~~~~~~~~~--~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~ 189 (693)
+....+.....++. +.+.+++.++..+.+.+...... .......++..++|.|..+...
T Consensus 161 ~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred CChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc------chhHHHHHHHHcCCCHHHHHHH
Confidence 55556655555444 89999999999999987643211 1112468899999999665543
No 152
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.93 E-value=0.00012 Score=73.17 Aligned_cols=144 Identities=13% Similarity=0.146 Sum_probs=76.7
Q ss_pred cccchHHHHHHHHHHhh---hc----------CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCC-C-EEEEEEEecc
Q 042597 11 TVVGQELLLYRVWRCIT---DQ----------EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNF-D-VVIWAAVIGF 75 (693)
Q Consensus 11 ~~vGr~~~~~~l~~~l~---~~----------~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f-~-~~~wv~~~~~ 75 (693)
.++|.++..+++.++.. .. ......+.++|++|+|||++|+.++..... .... . ..+.++..+.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~-~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHR-LGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHH-cCCcccceEEEecHHHH
Confidence 57898887777665432 10 012236899999999999999888876621 1111 1 2233332111
Q ss_pred CCchhhhhhchhHHHHHHHHHHc-cCcEEEEEeCccccc------ch-----hhh----------hhhhhcccchhhhhh
Q 042597 76 SDDKKWKEKSLQDKAADISSILS-RKKFVLLLDDIWERI------DL-----KEL----------VSLFLTTRSVDVCDQ 133 (693)
Q Consensus 76 ~~~~~~~~~~~~~~~~~l~~~l~-~~~~LlvlDdv~~~~------~~-----~~~----------~~iliTtr~~~~~~~ 133 (693)
.. ....... ..+.+.++ ...-+++||+++... ++ ..+ .+||+++.....-..
T Consensus 102 ~~--~~~g~~~----~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~ 175 (284)
T TIGR02880 102 VG--QYIGHTA----PKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSF 175 (284)
T ss_pred hH--hhcccch----HHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHH
Confidence 11 0000011 11222222 134688999997431 11 111 244555443221111
Q ss_pred ---------cCCceEEeccCCchHHHHHHHHHhhccc
Q 042597 134 ---------MDAEKLEVYSLANDEAWKLFQEMVDRST 161 (693)
Q Consensus 134 ---------~~~~~~~l~~l~~~e~~~l~~~~~~~~~ 161 (693)
.-...+.+++++.+|..+++.+.+....
T Consensus 176 ~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~ 212 (284)
T TIGR02880 176 FESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQ 212 (284)
T ss_pred HhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhc
Confidence 1123489999999999999988876543
No 153
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.93 E-value=0.00059 Score=70.16 Aligned_cols=174 Identities=16% Similarity=0.211 Sum_probs=100.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCC-EEEEEEEeccCCchhhhhhchhHHHHHHHHHHccCcEEEEEeCcc
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFD-VVIWAAVIGFSDDKKWKEKSLQDKAADISSILSRKKFVLLLDDIW 110 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~ 110 (693)
....+.|||+.|.|||-|++++.+.. . +...+ .++++....+.. .......+.....+++.. .-=++++||++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~-~-~~~~~a~v~y~~se~f~~--~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq 185 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEA-L-ANGPNARVVYLTSEDFTN--DFVKALRDNEMEKFKEKY--SLDLLLIDDIQ 185 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHH-H-hhCCCceEEeccHHHHHH--HHHHHHHhhhHHHHHHhh--ccCeeeechHh
Confidence 47899999999999999999999987 2 22222 344443322211 011111112233444444 33388899997
Q ss_pred cccch----hhh-----------hhhhhcccch---------hhhhhcCCce-EEeccCCchHHHHHHHHHhhcccCCCC
Q 042597 111 ERIDL----KEL-----------VSLFLTTRSV---------DVCDQMDAEK-LEVYSLANDEAWKLFQEMVDRSTLGSH 165 (693)
Q Consensus 111 ~~~~~----~~~-----------~~iliTtr~~---------~~~~~~~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~ 165 (693)
-.... +.+ ..||+|++.. ++..++.++- +.+.+.+.+....++.+++...+...+
T Consensus 186 ~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~ 265 (408)
T COG0593 186 FLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIP 265 (408)
T ss_pred HhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCC
Confidence 54221 122 4688888552 3445555555 899999999999999998877765555
Q ss_pred CChHHHHHHHHHHhCC----cchHHHHHHHHHh-c--CCChhHHHHHHHHHhhhhc
Q 042597 166 TSIPELAETLARECSG----LPLALKTVGRAMK-S--QTKVGDWQRAIKKMRISAS 214 (693)
Q Consensus 166 ~~~~~~~~~I~~~~~G----~Plal~~~~~~l~-~--~~~~~~~~~~l~~l~~~~~ 214 (693)
.+.+.-|++.... +.-|+..+..+-. . .-+.+.-++++..+.....
T Consensus 266 ---~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 266 ---DEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRAGE 318 (408)
T ss_pred ---HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhcccc
Confidence 3444444444333 2233332222211 1 2356666666666555433
No 154
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.90 E-value=0.00019 Score=72.95 Aligned_cols=148 Identities=15% Similarity=0.142 Sum_probs=83.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhcccc-------------------CCCCEEEEEEEeccCCchhhhhhchhHHHHH
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQ-------------------HNFDVVIWAAVIGFSDDKKWKEKSLQDKAAD 92 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~-------------------~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~ 92 (693)
-.+...++|+.|+||||+|..++...-... .|.|.. |+.- .............++.+.
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~-~i~~--~~~~~~i~id~iR~l~~~ 97 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNF-VLEP--EEADKTIKVDQVRELVSF 97 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEE-EEec--cCCCCCCCHHHHHHHHHH
Confidence 346688999999999999999999872211 122321 2210 000000111112222222
Q ss_pred HHHH-HccCcEEEEEeCcccccc--hhhh----------hhhhhcccc-hhhhhhcCCce--EEeccCCchHHHHHHHHH
Q 042597 93 ISSI-LSRKKFVLLLDDIWERID--LKEL----------VSLFLTTRS-VDVCDQMDAEK--LEVYSLANDEAWKLFQEM 156 (693)
Q Consensus 93 l~~~-l~~~~~LlvlDdv~~~~~--~~~~----------~~iliTtr~-~~~~~~~~~~~--~~l~~l~~~e~~~l~~~~ 156 (693)
+... ..+++=++|||+++.+.. ...+ ..+|++|.+ ..+.....++. +.+.+++.+++.+.+.+.
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred HhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHh
Confidence 2211 123444557799997632 2233 344444444 45554444443 899999999999988765
Q ss_pred hhcccCCCCCChHHHHHHHHHHhCCcchHHHHH
Q 042597 157 VDRSTLGSHTSIPELAETLARECSGLPLALKTV 189 (693)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~ 189 (693)
..... .+.+..+++.++|.|..+..+
T Consensus 178 ~~~~~-------~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 178 LPESD-------ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred cccCC-------hHHHHHHHHHcCCCHHHHHHH
Confidence 42111 455678899999999755443
No 155
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.88 E-value=4.9e-07 Score=95.53 Aligned_cols=130 Identities=22% Similarity=0.219 Sum_probs=91.0
Q ss_pred ccccccccceeeeccccchhhc-cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHh-hhccccc
Q 042597 334 KVQEWEGAKRVSLMDNRILRLL-EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSG-IANLVSL 411 (693)
Q Consensus 334 ~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~-~~~l~~L 411 (693)
+...|..+...++.+|++..+. .+.-++.|+.|+|+.|++++.. ++..|++|+.|||++| .+..+|.. ...+ +|
T Consensus 159 ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L 234 (1096)
T KOG1859|consen 159 NSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KL 234 (1096)
T ss_pred cchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccc-hhccccccchhhh-hh
Confidence 3345677777788888777664 3556778888888888887765 4778888888888888 67777642 2233 38
Q ss_pred cEEeeCCCCCCccChhhhcCCCCcEeccCCccccccccc-ccccCCCccccccccccCC
Q 042597 412 HHLDLSSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPH-KLKSGFSKLEALRLLECGS 469 (693)
Q Consensus 412 ~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~-~~~~~l~~L~~L~l~~~~~ 469 (693)
+.|++++|-++++- ++.+|.+|+.||+++| .+..... ..++.|..|+.|++.+|..
T Consensus 235 ~~L~lrnN~l~tL~-gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 235 QLLNLRNNALTTLR-GIENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eeeeecccHHHhhh-hHHhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 88888888887764 6788888888888877 4433221 1145677788888887764
No 156
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.87 E-value=7e-07 Score=94.43 Aligned_cols=151 Identities=21% Similarity=0.253 Sum_probs=100.3
Q ss_pred ccccccccceeeeccccchhhccCCCC-Cccceeeccccccc---c----ccccccCC---CCcccEEEccCCcchhhch
Q 042597 334 KVQEWEGAKRVSLMDNRILRLLEIPTC-SRLITLLLYENWIE---E----ITDGFFQP---MSSLRVLALGRNFFLSKLR 402 (693)
Q Consensus 334 ~~~~~~~l~~l~l~~~~~~~~~~~~~~-~~L~~L~l~~~~l~---~----~~~~~~~~---l~~L~~L~L~~~~~~~~~p 402 (693)
+.-.+..+|+|.+.++.+.....+..+ .+|+.|.-. |.++ . ...+ +++ --.|.+.+.++| .+..+-
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~-~Sl~Al~~v~ascggd-~~ns~~Wn~L~~a~fsyN-~L~~mD 180 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICH-NSLDALRHVFASCGGD-ISNSPVWNKLATASFSYN-RLVLMD 180 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhh-ccHHHHHHHHHHhccc-cccchhhhhHhhhhcchh-hHHhHH
Confidence 344567888888888877654433222 233333222 1111 1 0111 111 235777888888 777777
Q ss_pred HhhhccccccEEeeCCCCCCccChhhhcCCCCcEeccCCcccccccccccccCCCccccccccccCCCccccccCccccc
Q 042597 403 SGIANLVSLHHLDLSSTNITGLPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLEALRLLECGSGGVIEEEGNVLCD 482 (693)
Q Consensus 403 ~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 482 (693)
.++.-++.|+.|||++|++++.. .+..++.|++||++.| .+..+|.--...+ +|+.|.+.+|...
T Consensus 181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lrnN~l~------------ 245 (1096)
T KOG1859|consen 181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLRNNALT------------ 245 (1096)
T ss_pred HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccc-hhccccccchhhh-hheeeeecccHHH------------
Confidence 88888999999999999999986 7888999999999998 8888886322233 4999999888543
Q ss_pred CcchhHHhhccCCCCceeEEEeec
Q 042597 483 DAEPLMKELLGLKHLNVLSWSFRS 506 (693)
Q Consensus 483 ~~~~~~~~l~~L~~L~~l~~~~~~ 506 (693)
.+..+.+|++|+.|+++++-
T Consensus 246 ----tL~gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 246 ----TLRGIENLKSLYGLDLSYNL 265 (1096)
T ss_pred ----hhhhHHhhhhhhccchhHhh
Confidence 45566677777777776654
No 157
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.85 E-value=2.1e-06 Score=85.35 Aligned_cols=271 Identities=17% Similarity=0.193 Sum_probs=164.6
Q ss_pred cccccceeeeccccc-hh--hcc-CCCCCccceeecccc-cccccccc-ccCCCCcccEEEccCCcchhh--chHhhhcc
Q 042597 337 EWEGAKRVSLMDNRI-LR--LLE-IPTCSRLITLLLYEN-WIEEITDG-FFQPMSSLRVLALGRNFFLSK--LRSGIANL 408 (693)
Q Consensus 337 ~~~~l~~l~l~~~~~-~~--~~~-~~~~~~L~~L~l~~~-~l~~~~~~-~~~~l~~L~~L~L~~~~~~~~--~p~~~~~l 408 (693)
..+++.+|.+.++.. +. +.+ -..|++|+.|++..| .++..... .-..+++|++|++++|..+.. +-.-..++
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 456777777776652 11 112 246889999999886 55544332 234689999999999965543 22235567
Q ss_pred ccccEEeeCCCC-CCc--cChhhhcCCCCcEeccCCccccccccccc-ccCCCccccccccccCCCccccccCcccccCc
Q 042597 409 VSLHHLDLSSTN-ITG--LPQDLKALEKLRYLNLDHAYKLSIIPHKL-KSGFSKLEALRLLECGSGGVIEEEGNVLCDDA 484 (693)
Q Consensus 409 ~~L~~L~l~~~~-i~~--lp~~~~~l~~L~~L~l~~~~~l~~~p~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 484 (693)
..++.+.+++|. +.. +-.--+...-+..+++..|..+++..-+. -..+..|+.|..++|....
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~------------- 308 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDIT------------- 308 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCc-------------
Confidence 778888888762 221 21112344556666666775555544221 2457788999888886532
Q ss_pred chhHHhhc-cCCCCceeEEEeechhhHhhhhccchhhhhhcc-cccceeEeccccccc----cccccccCCccEEEEecc
Q 042597 485 EPLMKELL-GLKHLNVLSWSFRSSLAVQKFFKYPKLELELEN-TNLEEMKIDSTEEVK----KRFRSGFRSLNTVRVNGC 558 (693)
Q Consensus 485 ~~~~~~l~-~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~L~~L~i~~~~~~~----~~~~~~~~~L~~L~l~~~ 558 (693)
...+..|. +-.+|+.+.+..+....-..+..+. .+ ..|+.+.+..+.... ......++.|++|+++.|
T Consensus 309 d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~------rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshc 382 (483)
T KOG4341|consen 309 DEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLG------RNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHC 382 (483)
T ss_pred hHHHHHHhcCCCceEEEeccccchhhhhhhhhhh------cCChhhhhhcccccceehhhhHhhhccCCchhccCChhhh
Confidence 12333332 4466777776655421111111110 11 677777777665432 223467899999999999
Q ss_pred -ccccc--h----hhhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeecccccccccccc--CCCC
Q 042597 559 -KVKDL--T----WLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLKSIYP--NPLP 629 (693)
Q Consensus 559 -~l~~~--~----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~ 629 (693)
.+++. - .-..+..|+.|.+++|+.+++-.. .....+++|+.+.+.+|.+...-+. ...+
T Consensus 383 e~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L------------e~l~~c~~Leri~l~~~q~vtk~~i~~~~~~ 450 (483)
T KOG4341|consen 383 ELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL------------EHLSICRNLERIELIDCQDVTKEAISRFATH 450 (483)
T ss_pred hhhhhhhhhhhhhccccccccceeeecCCCCchHHHH------------HHHhhCcccceeeeechhhhhhhhhHHHHhh
Confidence 44443 1 123467899999999997776432 3566788999999999988655432 2346
Q ss_pred CCCccEEEE
Q 042597 630 FPKLKKIQV 638 (693)
Q Consensus 630 ~~~L~~L~l 638 (693)
+|+++..-.
T Consensus 451 lp~i~v~a~ 459 (483)
T KOG4341|consen 451 LPNIKVHAY 459 (483)
T ss_pred Cccceehhh
Confidence 777766554
No 158
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.85 E-value=8.9e-05 Score=79.05 Aligned_cols=150 Identities=15% Similarity=0.217 Sum_probs=84.2
Q ss_pred CcccchHHHHHHHHHHhhh-----------cCCCeeEEEEEcCCCCcHHHHHHHHHhhhcccc--CCCCEEEEEEEec--
Q 042597 10 HTVVGQELLLYRVWRCITD-----------QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQ--HNFDVVIWAAVIG-- 74 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~--~~f~~~~wv~~~~-- 74 (693)
..+.|.+..++++.+.+.- +-...+-+.++|++|+|||++|+++++...... .......++.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e 261 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE 261 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence 4577899999998888642 012345689999999999999999999872110 0112233444321
Q ss_pred cCCc-hhhhhhchhHHHHHHHHHH-ccCcEEEEEeCccccc---------ch-----hhh------------hhhhhccc
Q 042597 75 FSDD-KKWKEKSLQDKAADISSIL-SRKKFVLLLDDIWERI---------DL-----KEL------------VSLFLTTR 126 (693)
Q Consensus 75 ~~~~-~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~---------~~-----~~~------------~~iliTtr 126 (693)
.... ...............++.. .+++++++||+++... +. ..+ ..||.||.
T Consensus 262 Ll~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN 341 (512)
T TIGR03689 262 LLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASN 341 (512)
T ss_pred hcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccC
Confidence 1100 0001111122222222221 3478999999998431 11 111 12444554
Q ss_pred chhhhhh-----cCCce-EEeccCCchHHHHHHHHHhhc
Q 042597 127 SVDVCDQ-----MDAEK-LEVYSLANDEAWKLFQEMVDR 159 (693)
Q Consensus 127 ~~~~~~~-----~~~~~-~~l~~l~~~e~~~l~~~~~~~ 159 (693)
....... .+.+. +.++..+.++..++|.++...
T Consensus 342 ~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 342 REDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 4332221 12222 899999999999999887653
No 159
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.85 E-value=1.4e-05 Score=70.18 Aligned_cols=81 Identities=19% Similarity=0.313 Sum_probs=47.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhcccc--CCCCEEEEEEEeccCCch-------------hhhhhchhHHHHHHHHH
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQ--HNFDVVIWAAVIGFSDDK-------------KWKEKSLQDKAADISSI 96 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~--~~f~~~~wv~~~~~~~~~-------------~~~~~~~~~~~~~l~~~ 96 (693)
+.+++.|+|++|+|||++++++++...... ..-..++|+.+....... ........+....+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 457899999999999999999999862110 013345677772211100 00012345555667777
Q ss_pred HccCc-EEEEEeCcccc
Q 042597 97 LSRKK-FVLLLDDIWER 112 (693)
Q Consensus 97 l~~~~-~LlvlDdv~~~ 112 (693)
+...+ .++|+||++..
T Consensus 83 l~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHHCTEEEEEEETTHHH
T ss_pred HHhcCCeEEEEeChHhc
Confidence 76654 59999999875
No 160
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.83 E-value=0.0043 Score=63.67 Aligned_cols=175 Identities=16% Similarity=0.216 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHH-HHHHhhhccccCCCCEEEEEEE---------------------
Q 042597 15 QELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTIL-TQVNNNFCHQQHNFDVVIWAAV--------------------- 72 (693)
Q Consensus 15 r~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla-~~~~~~~~~~~~~f~~~~wv~~--------------------- 72 (693)
|.+.+++|..||.. .....|+|.||.|+||+.|. .++..+. ..++.++|
T Consensus 1 R~e~~~~L~~wL~e--~~~TFIvV~GPrGSGK~elV~d~~L~~r-------~~vL~IDC~~i~~ar~D~~~I~~lA~qvG 71 (431)
T PF10443_consen 1 RKEAIEQLKSWLNE--NPNTFIVVQGPRGSGKRELVMDHVLKDR-------KNVLVIDCDQIVKARGDAAFIKNLASQVG 71 (431)
T ss_pred CchHHHHHHHHHhc--CCCeEEEEECCCCCCccHHHHHHHHhCC-------CCEEEEEChHhhhccChHHHHHHHHHhcC
Confidence 56778999999988 55679999999999999999 6665543 12666666
Q ss_pred --------------------------eccCCchhhhhh-chhHHHHHHHHH-------------------H---ccCcEE
Q 042597 73 --------------------------IGFSDDKKWKEK-SLQDKAADISSI-------------------L---SRKKFV 103 (693)
Q Consensus 73 --------------------------~~~~~~~~~~~~-~~~~~~~~l~~~-------------------l---~~~~~L 103 (693)
.++....+.+-. .+......|++. + ..++-+
T Consensus 72 Y~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PV 151 (431)
T PF10443_consen 72 YFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPV 151 (431)
T ss_pred CCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCE
Confidence 000000000000 011111112221 1 112568
Q ss_pred EEEeCcccccc-----------hhhh------hhhhhcccchhhhh----hcCCce---EEeccCCchHHHHHHHHHhhc
Q 042597 104 LLLDDIWERID-----------LKEL------VSLFLTTRSVDVCD----QMDAEK---LEVYSLANDEAWKLFQEMVDR 159 (693)
Q Consensus 104 lvlDdv~~~~~-----------~~~~------~~iliTtr~~~~~~----~~~~~~---~~l~~l~~~e~~~l~~~~~~~ 159 (693)
||||++....+ |... ..||++|.+....+ ...... +.+...+.+.|..++..+...
T Consensus 152 VVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~ 231 (431)
T PF10443_consen 152 VVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDE 231 (431)
T ss_pred EEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcc
Confidence 99999865432 2222 67888887754433 332222 899999999999999888754
Q ss_pred ccCC------------CC-----CChHHHHHHHHHHhCCcchHHHHHHHHHhcCCC
Q 042597 160 STLG------------SH-----TSIPELAETLARECSGLPLALKTVGRAMKSQTK 198 (693)
Q Consensus 160 ~~~~------------~~-----~~~~~~~~~I~~~~~G~Plal~~~~~~l~~~~~ 198 (693)
.... .+ .....-.+..+...||=-.=+..+++.++...+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~ 287 (431)
T PF10443_consen 232 DTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGES 287 (431)
T ss_pred cccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCC
Confidence 3110 00 124456688899999999999999999988644
No 161
>COG3903 Predicted ATPase [General function prediction only]
Probab=97.83 E-value=0.00011 Score=73.95 Aligned_cols=262 Identities=18% Similarity=0.210 Sum_probs=156.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCC-CEEEEEEEeccCCchhhhh----------hchhHHHHHHHHHHccC
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNF-DVVIWAAVIGFSDDKKWKE----------KSLQDKAADISSILSRK 100 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f-~~~~wv~~~~~~~~~~~~~----------~~~~~~~~~l~~~l~~~ 100 (693)
..+.+.++|.|||||||++-.+.. . ...| +.+.+++.....+....-. ...+.....+.....++
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~---~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~~~~~~~~~~~~~r 88 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-A---ASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGDSAVDTLVRRIGDR 88 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-H---hhhcccceeeeeccccCchhHhHHHHHhhcccccccchHHHHHHHHHHhhh
Confidence 468999999999999999999988 4 4455 4555666644444221111 12233445666777889
Q ss_pred cEEEEEeCcccccchhh-----h------hhhhhcccchhhhhhcCCceEEeccCCch-HHHHHHHHHhhccc--CCCCC
Q 042597 101 KFVLLLDDIWERIDLKE-----L------VSLFLTTRSVDVCDQMDAEKLEVYSLAND-EAWKLFQEMVDRST--LGSHT 166 (693)
Q Consensus 101 ~~LlvlDdv~~~~~~~~-----~------~~iliTtr~~~~~~~~~~~~~~l~~l~~~-e~~~l~~~~~~~~~--~~~~~ 166 (693)
|.++|+||..+..+-.. + -.|+.|+|...... +...+.++.++.. ++.++|...+.... +--..
T Consensus 89 r~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~--ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~ 166 (414)
T COG3903 89 RALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA--GEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTD 166 (414)
T ss_pred hHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc--ccccccCCccccCCchhHHHHHHHHHhccceeecC
Confidence 99999999876643221 1 56778887654321 1122666666665 67778765543221 11222
Q ss_pred ChHHHHHHHHHHhCCcchHHHHHHHHHhcCCChhHHHHHHHHHhhhhcccCC-------CcHHHHHHHHHhhcCCCchhh
Q 042597 167 SIPELAETLARECSGLPLALKTVGRAMKSQTKVGDWQRAIKKMRISASKFTG-------MDEKVFSRLKFSYDSLSTDEL 239 (693)
Q Consensus 167 ~~~~~~~~I~~~~~G~Plal~~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~-------~~~~~~~~l~~s~~~L~~~~~ 239 (693)
.....+..|-++..|.|++|..+++..+.- ...+ +.+.++.....+.+ -.......+.+||.-|.. ..
T Consensus 167 ~~~a~v~~icr~ldg~~laielaaarv~sl-~~~~---i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg-we 241 (414)
T COG3903 167 DNAAAVAEICRRLDGIPLAIELAAARVRSL-SPDE---IAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG-WE 241 (414)
T ss_pred CchHHHHHHHHHhhcchHHHHHHHHHHHhc-CHHH---HHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh-HH
Confidence 336788999999999999999999988873 2222 22222222211111 122556778889988887 67
Q ss_pred hhHHhhhcccCCCCccChHHHHHHHHhcCccC--CchhhHHHHHHHHHccceeec---CCCcEEechHHHHHHH
Q 042597 240 RSCLLYCCLYPKDYEIPRRELIDYWISEGFVD--DFNDGCEFINDLLHACLLEEE---GDDHVKMHDMIREMLL 308 (693)
Q Consensus 240 k~~~l~~~~f~~~~~i~~~~li~~w~~~g~~~--~~~~~~~~l~~L~~~~ll~~~---~~~~~~~hd~~~~~~~ 308 (693)
+.-|--++.|...+... ...|.+-|-.. +.-.....+..+++++++... +...++.-+-.+.|+.
T Consensus 242 ~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yal 311 (414)
T COG3903 242 RALFGRLAVFVGGFDLG----LALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYAL 311 (414)
T ss_pred HHHhcchhhhhhhhccc----HHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 77777777776654433 23333433322 223334446777888887652 2334444455555443
No 162
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=1.1e-05 Score=76.71 Aligned_cols=67 Identities=19% Similarity=0.041 Sum_probs=38.0
Q ss_pred cccCCccEEEEeccccccch---hhhhcCCccEEEEeccccchhhhcccccccccccccccCCcCCCcceeecccccccc
Q 042597 545 SGFRSLNTVRVNGCKVKDLT---WLVFVQNLKELEISFCHAVEDIIIVDKLRDISEIIGLEHNFFAQLEYLRILYGRNLK 621 (693)
Q Consensus 545 ~~~~~L~~L~l~~~~l~~~~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 621 (693)
..+||+..+.++.|.++... ....+|.+--|+|+.+..-... ++ .....||.|..|++.+.|-..
T Consensus 196 r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswa----------sv--D~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 196 RIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWA----------SV--DALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHH----------HH--HHHcCCchhheeeccCCcccc
Confidence 34777777777777555543 2334566666666665432211 11 245667777777776665443
Q ss_pred cc
Q 042597 622 SI 623 (693)
Q Consensus 622 ~l 623 (693)
.+
T Consensus 264 ~l 265 (418)
T KOG2982|consen 264 PL 265 (418)
T ss_pred cc
Confidence 33
No 163
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.80 E-value=5.8e-05 Score=79.84 Aligned_cols=169 Identities=18% Similarity=0.185 Sum_probs=106.9
Q ss_pred CcccchHHHHHHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhccccC----CCCEEEEEEE---eccCCchhh
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCHQQH----NFDVVIWAAV---IGFSDDKKW 81 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~~~~----~f~~~~wv~~---~~~~~~~~~ 81 (693)
+++||.+..+..|...+.. ++. .--...|+.|+||||+|+-++.-+ ...+ .+-+.+-.|- .+...+-..
T Consensus 16 ~evvGQe~v~~~L~nal~~--~ri~hAYlfsG~RGvGKTt~Ari~Akal-NC~~~~~~ePC~~C~~Ck~I~~g~~~DviE 92 (515)
T COG2812 16 DDVVGQEHVVKTLSNALEN--GRIAHAYLFSGPRGVGKTTIARILAKAL-NCENGPTAEPCGKCISCKEINEGSLIDVIE 92 (515)
T ss_pred HHhcccHHHHHHHHHHHHh--CcchhhhhhcCCCCcCchhHHHHHHHHh-cCCCCCCCCcchhhhhhHhhhcCCcccchh
Confidence 5789999999999999977 443 444779999999999999999876 3332 1111111111 000000000
Q ss_pred hhhchhHHHHHHHHHH--------ccCcEEEEEeCcccc--cchhhh-----------hhhhhcccchhhhhhcCCce--
Q 042597 82 KEKSLQDKAADISSIL--------SRKKFVLLLDDIWER--IDLKEL-----------VSLFLTTRSVDVCDQMDAEK-- 138 (693)
Q Consensus 82 ~~~~~~~~~~~l~~~l--------~~~~~LlvlDdv~~~--~~~~~~-----------~~iliTtr~~~~~~~~~~~~-- 138 (693)
.+.--+..+..+++.. +++-=++|||+|+.. +.+.++ .-|+.||....+....-++.
T Consensus 93 iDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~ 172 (515)
T COG2812 93 IDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQR 172 (515)
T ss_pred hhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhcccc
Confidence 0111112233344333 233338899999855 445555 45667777766655544444
Q ss_pred EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcch
Q 042597 139 LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPL 184 (693)
Q Consensus 139 ~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl 184 (693)
+.+..++.++....+...+.......+ .++...|++..+|...
T Consensus 173 f~fkri~~~~I~~~L~~i~~~E~I~~e---~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 173 FDFKRLDLEEIAKHLAAILDKEGINIE---EDALSLIARAAEGSLR 215 (515)
T ss_pred ccccCCCHHHHHHHHHHHHHhcCCccC---HHHHHHHHHHcCCChh
Confidence 899999999999999988877664443 6778888888888654
No 164
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.78 E-value=0.0013 Score=62.53 Aligned_cols=197 Identities=13% Similarity=0.191 Sum_probs=118.4
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccc---cCCCCEEEEEEE--------------
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQ---QHNFDVVIWAAV-------------- 72 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~---~~~f~~~~wv~~-------------- 72 (693)
+...++++...++...... +..+...++||.|.||-|.+..+.+...-+ +-+-+...|..-
T Consensus 13 ~~l~~~~e~~~~Lksl~~~--~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSST--GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhcccHHHHHHHHHHhccc--CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 4577778777777776653 668999999999999999999998877211 112223333322
Q ss_pred -eccCCchhhhhhc---hhHHHHHHHHH----Hc-cCcE-EEEEeCcccc--cchhhh----------hhhhhcccc-hh
Q 042597 73 -IGFSDDKKWKEKS---LQDKAADISSI----LS-RKKF-VLLLDDIWER--IDLKEL----------VSLFLTTRS-VD 129 (693)
Q Consensus 73 -~~~~~~~~~~~~~---~~~~~~~l~~~----l~-~~~~-LlvlDdv~~~--~~~~~~----------~~iliTtr~-~~ 129 (693)
.+..+ .+....+ .+++++...+. .. ++.| ++|+.+++.. +.-.++ +|+|+...+ ..
T Consensus 91 HlEitP-SDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~Sr 169 (351)
T KOG2035|consen 91 HLEITP-SDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSR 169 (351)
T ss_pred eEEeCh-hhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCccc
Confidence 11111 1111111 22222222111 12 2344 5667776644 222222 555544332 33
Q ss_pred hhhhcCCce--EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhcC----------C
Q 042597 130 VCDQMDAEK--LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRAMKSQ----------T 197 (693)
Q Consensus 130 ~~~~~~~~~--~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~l~~~----------~ 197 (693)
+........ +++++.+++|....+.+...+.+...+ .+.+.+|+++++|+-.-.-.+...++-+ -
T Consensus 170 iIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp---~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i 246 (351)
T KOG2035|consen 170 IIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP---KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVI 246 (351)
T ss_pred chhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc---HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCC
Confidence 444444444 899999999999999998887775555 8899999999999876555555554422 1
Q ss_pred ChhHHHHHHHHHhhh
Q 042597 198 KVGDWQRAIKKMRIS 212 (693)
Q Consensus 198 ~~~~~~~~l~~l~~~ 212 (693)
..-+|+.++.+....
T Consensus 247 ~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 247 PKPDWEIYIQEIARV 261 (351)
T ss_pred CCccHHHHHHHHHHH
Confidence 245898887776654
No 165
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00022 Score=74.73 Aligned_cols=92 Identities=15% Similarity=0.192 Sum_probs=58.2
Q ss_pred CcccchHHHHHHHHHHhhhc--C--------CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch
Q 042597 10 HTVVGQELLLYRVWRCITDQ--E--------KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK 79 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~--~--------~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 79 (693)
.++=|.+..+.++.+.+..- . ...+=|.++||+|+|||.||++++... .-. ++.+. ...
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel---~vP-----f~~is---Ape 258 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL---GVP-----FLSIS---APE 258 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc---CCc-----eEeec---chh
Confidence 45778899999988887641 0 234668899999999999999999987 222 22221 101
Q ss_pred hhhh--hchhHHHHHHHHH-HccCcEEEEEeCcccc
Q 042597 80 KWKE--KSLQDKAADISSI-LSRKKFVLLLDDIWER 112 (693)
Q Consensus 80 ~~~~--~~~~~~~~~l~~~-l~~~~~LlvlDdv~~~ 112 (693)
.... ..-++.+.++.+. ....+|+++||+++..
T Consensus 259 ivSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 259 IVSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred hhcccCcccHHHHHHHHHHHhccCCeEEEeeccccc
Confidence 1111 1122333333333 3457999999999855
No 166
>CHL00176 ftsH cell division protein; Validated
Probab=97.77 E-value=0.00018 Score=79.51 Aligned_cols=161 Identities=16% Similarity=0.184 Sum_probs=89.7
Q ss_pred CcccchHHHHHHHHHHhh---hc-------CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch
Q 042597 10 HTVVGQELLLYRVWRCIT---DQ-------EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK 79 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~---~~-------~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 79 (693)
+.++|.++..+++.+.+. .. ....+-|.++|++|+|||++|+.++... ...| +.+...++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p~---i~is~s~f~~-- 254 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVPF---FSISGSEFVE-- 254 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCe---eeccHHHHHH--
Confidence 457888877777666542 11 1224568999999999999999999875 2222 1111111110
Q ss_pred hhhhhchhHHHHHHHHHHccCcEEEEEeCccccc------------c----hhhh------------hhhhhcccchhhh
Q 042597 80 KWKEKSLQDKAADISSILSRKKFVLLLDDIWERI------------D----LKEL------------VSLFLTTRSVDVC 131 (693)
Q Consensus 80 ~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~------------~----~~~~------------~~iliTtr~~~~~ 131 (693)
.............+....+..+++++|||++... . +..+ ..||.||......
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~L 334 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDIL 334 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhh
Confidence 0000111122223334445678999999997541 0 1111 1344455443322
Q ss_pred hh-----cCCce-EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCc
Q 042597 132 DQ-----MDAEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGL 182 (693)
Q Consensus 132 ~~-----~~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 182 (693)
.. .+.+. +.+...+.++-.++++.++...... .......+++.+.|.
T Consensus 335 D~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~----~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 335 DAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS----PDVSLELIARRTPGF 387 (638)
T ss_pred hhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc----hhHHHHHHHhcCCCC
Confidence 21 11222 7888888888889998877653211 134567788887773
No 167
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=5.5e-06 Score=78.72 Aligned_cols=82 Identities=12% Similarity=0.051 Sum_probs=50.8
Q ss_pred cccceeEeccccccc---cccccccCCccEEEEeccccccc---hhhhhcCCccEEEEeccccchhhhcccccccccccc
Q 042597 526 TNLEEMKIDSTEEVK---KRFRSGFRSLNTVRVNGCKVKDL---TWLVFVQNLKELEISFCHAVEDIIIVDKLRDISEII 599 (693)
Q Consensus 526 ~~L~~L~i~~~~~~~---~~~~~~~~~L~~L~l~~~~l~~~---~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 599 (693)
+++..+-+..++... ......++.+.-|.++.+++.+. ..+..+|.|..|.+++++..+.+...+.+.
T Consensus 199 pnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~------ 272 (418)
T KOG2982|consen 199 PNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRF------ 272 (418)
T ss_pred ccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceE------
Confidence 455555555553321 22345677777888888866654 456678999999999998777654322221
Q ss_pred cccCCcCCCcceeec
Q 042597 600 GLEHNFFAQLEYLRI 614 (693)
Q Consensus 600 ~~~~~~~~~L~~L~l 614 (693)
.-.+.+++++.|+=
T Consensus 273 -llIaRL~~v~vLNG 286 (418)
T KOG2982|consen 273 -LLIARLTKVQVLNG 286 (418)
T ss_pred -EEEeeccceEEecC
Confidence 23455677777753
No 168
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.76 E-value=3.4e-05 Score=69.53 Aligned_cols=103 Identities=27% Similarity=0.343 Sum_probs=84.9
Q ss_pred cccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchH--hhhccccccEEee
Q 042597 339 EGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRS--GIANLVSLHHLDL 416 (693)
Q Consensus 339 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~--~~~~l~~L~~L~l 416 (693)
.+...+++.+|++..+..++.++.|.+|.+.+|.|+.+.+..-..+++|.+|.|.+| .+..+-+ .+..++.|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceeee
Confidence 355678899999999999999999999999999999999986667888999999999 6655432 3567889999999
Q ss_pred CCCCCCccChh----hhcCCCCcEeccCCc
Q 042597 417 SSTNITGLPQD----LKALEKLRYLNLDHA 442 (693)
Q Consensus 417 ~~~~i~~lp~~----~~~l~~L~~L~l~~~ 442 (693)
-+|.++..+.. +..+++|++||+.+-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 99988876543 677888888888654
No 169
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.76 E-value=0.0032 Score=64.49 Aligned_cols=181 Identities=15% Similarity=0.198 Sum_probs=106.2
Q ss_pred CCcccchHHHHHHHHHHhhh--cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch-------
Q 042597 9 DHTVVGQELLLYRVWRCITD--QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK------- 79 (693)
Q Consensus 9 ~~~~vGr~~~~~~l~~~l~~--~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~------- 79 (693)
+...+||+.+.+.+.+|+.. ..+...-+.|.|-+|.|||.....++.+....... -+++++++.......
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~-~~~v~inc~sl~~~~aiF~kI~ 227 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS-PVTVYINCTSLTEASAIFKKIF 227 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc-ceeEEEeeccccchHHHHHHHH
Confidence 35689999999999999875 34677899999999999999999999987322222 245677663211100
Q ss_pred --h----hhhhchhHHHHHHHHHHcc--CcEEEEEeCcccccc-----------hhhh--hhhh---------hcccchh
Q 042597 80 --K----WKEKSLQDKAADISSILSR--KKFVLLLDDIWERID-----------LKEL--VSLF---------LTTRSVD 129 (693)
Q Consensus 80 --~----~~~~~~~~~~~~l~~~l~~--~~~LlvlDdv~~~~~-----------~~~~--~~il---------iTtr~~~ 129 (693)
. .......+....+.+...+ .-+++|+|+.+.... |..+ +++| +|-|--.
T Consensus 228 ~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~Lp 307 (529)
T KOG2227|consen 228 SSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLP 307 (529)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhh
Confidence 0 0001112223333333333 358999999875521 2222 3333 2222211
Q ss_pred hhhh---cCCceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHH
Q 042597 130 VCDQ---MDAEKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRA 192 (693)
Q Consensus 130 ~~~~---~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~ 192 (693)
-+.. +.+..+..+|.+.++..+++..+..... .......+++-+++++.|.---+..+-..
T Consensus 308 rL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~--t~~~~~~Aie~~ArKvaa~SGDlRkaLdv 371 (529)
T KOG2227|consen 308 RLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES--TSIFLNAAIELCARKVAAPSGDLRKALDV 371 (529)
T ss_pred hhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc--ccccchHHHHHHHHHhccCchhHHHHHHH
Confidence 1111 2233389999999999999998875443 12223346666667765544333333333
No 170
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.76 E-value=0.00025 Score=66.42 Aligned_cols=161 Identities=14% Similarity=0.215 Sum_probs=91.1
Q ss_pred CcccchHHHHHH---HHHHhhh----cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhh
Q 042597 10 HTVVGQELLLYR---VWRCITD----QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWK 82 (693)
Q Consensus 10 ~~~vGr~~~~~~---l~~~l~~----~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~ 82 (693)
+..||.++...+ |+++|.. ++...+.|..+|++|.|||.+|+++++.. +-.| +-+.+.+... .-
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~---l~vkat~liG---eh 191 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPL---LLVKATELIG---EH 191 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCce---EEechHHHHH---HH
Confidence 568998877654 6677764 24578999999999999999999999976 2222 2222211111 01
Q ss_pred hhchhHHHHHHHHHH-ccCcEEEEEeCccccc----------chhhh---------------hh-hhhcccchhhhh-hc
Q 042597 83 EKSLQDKAADISSIL-SRKKFVLLLDDIWERI----------DLKEL---------------VS-LFLTTRSVDVCD-QM 134 (693)
Q Consensus 83 ~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~~----------~~~~~---------------~~-iliTtr~~~~~~-~~ 134 (693)
..+....++++.+.- +..+|+++||+.+... ++.++ +. -|..|.+...+. ..
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~ai 271 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAI 271 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHH
Confidence 112233333443333 4578999999987541 11111 11 222222222222 22
Q ss_pred CC--ce-EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcc
Q 042597 135 DA--EK-LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLP 183 (693)
Q Consensus 135 ~~--~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 183 (693)
++ .. ++..=-+++|-.+++...+..-..+. ....+.++.+++|+.
T Consensus 272 RsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv----~~~~~~~~~~t~g~S 319 (368)
T COG1223 272 RSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV----DADLRYLAAKTKGMS 319 (368)
T ss_pred HhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc----ccCHHHHHHHhCCCC
Confidence 22 22 66666678888888887776443222 233667777777754
No 171
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.75 E-value=0.00041 Score=71.22 Aligned_cols=133 Identities=11% Similarity=0.148 Sum_probs=76.0
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHH
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDK 89 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~ 89 (693)
+.++|.++..+.+..++..+ ....++.++|++|+|||++|+.+++.. ... ...++... . . .....+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~---~~~---~~~i~~~~--~-~---~~~i~~~ 87 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEV---GAE---VLFVNGSD--C-R---IDFVRNR 87 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHh---Ccc---ceEeccCc--c-c---HHHHHHH
Confidence 67899999999999998762 234677779999999999999999875 221 12232221 1 0 0011111
Q ss_pred HHHHHHHH--ccCcEEEEEeCcccccc--h-hhh----------hhhhhcccchh-hhhhcCC--ceEEeccCCchHHHH
Q 042597 90 AADISSIL--SRKKFVLLLDDIWERID--L-KEL----------VSLFLTTRSVD-VCDQMDA--EKLEVYSLANDEAWK 151 (693)
Q Consensus 90 ~~~l~~~l--~~~~~LlvlDdv~~~~~--~-~~~----------~~iliTtr~~~-~~~~~~~--~~~~l~~l~~~e~~~ 151 (693)
+....... .+.+-++|+||++.... . ..+ .++|+||.... +...... ..+.++..+.++..+
T Consensus 88 l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~ 167 (316)
T PHA02544 88 LTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIE 167 (316)
T ss_pred HHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHH
Confidence 11111111 23456789999986621 1 111 45667765432 1111111 226666777777766
Q ss_pred HHHH
Q 042597 152 LFQE 155 (693)
Q Consensus 152 l~~~ 155 (693)
++..
T Consensus 168 il~~ 171 (316)
T PHA02544 168 MMKQ 171 (316)
T ss_pred HHHH
Confidence 6543
No 172
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.75 E-value=5.1e-05 Score=66.59 Aligned_cols=69 Identities=23% Similarity=0.188 Sum_probs=40.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHcc-CcEEEEEeCcccc
Q 042597 36 IGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILSR-KKFVLLLDDIWER 112 (693)
Q Consensus 36 v~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~ 112 (693)
|.|+|++|+|||++|+.+++.. .. ..+.++...... .............+.+.-+. ++.++++||++..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~---~~~~i~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l 70 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GF---PFIEIDGSELIS--SYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKL 70 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TS---EEEEEETTHHHT--SSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGT
T ss_pred CEEECcCCCCeeHHHHHHHhhc---cc---cccccccccccc--ccccccccccccccccccccccceeeeeccchhc
Confidence 5799999999999999999987 21 233444322211 00111112222222222223 3799999999865
No 173
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.74 E-value=0.00011 Score=76.23 Aligned_cols=99 Identities=16% Similarity=0.108 Sum_probs=65.1
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhh----hh-
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWK----EK- 84 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~----~~- 84 (693)
.+.++.+..++.+...+.. .+.+.++|++|+|||++|+++++.. .....++.+.|+.+.......... ..
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l-~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~ 249 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLL-TGEKAPQRVNMVQFHQSYSYEDFIQGYRPNG 249 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHh-cCCcccceeeEEeecccccHHHHhcccCCCC
Confidence 4577788889999988865 5688889999999999999999987 445677788888773322111110 00
Q ss_pred ---ch--hHHHHHHHHHH--ccCcEEEEEeCccccc
Q 042597 85 ---SL--QDKAADISSIL--SRKKFVLLLDDIWERI 113 (693)
Q Consensus 85 ---~~--~~~~~~l~~~l--~~~~~LlvlDdv~~~~ 113 (693)
.. ......+.... .++++++|||+++...
T Consensus 250 vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 250 VGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred CCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 00 01112222222 2468999999997653
No 174
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.73 E-value=0.0004 Score=68.92 Aligned_cols=143 Identities=16% Similarity=0.216 Sum_probs=89.8
Q ss_pred CCcccchHHHHHHHHHHhhhcCCC-eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccC-----------
Q 042597 9 DHTVVGQELLLYRVWRCITDQEKN-RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFS----------- 76 (693)
Q Consensus 9 ~~~~vGr~~~~~~l~~~l~~~~~~-~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~----------- 76 (693)
.+.+-+|+.++..+..++...+.. .+.|.|+|.+|.|||.+.+++.+.. . . ..+|+++.+-+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~-n--~---~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL-N--L---ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc-C--C---cceeeehHHhccHHHHHHHHHH
Confidence 467899999999999999886553 4667999999999999999999875 2 1 24688772111
Q ss_pred -----C-chhhhhh---chhHHHHHHHH--HH--ccCcEEEEEeCcccccchhhh---------------hhhhhcccc-
Q 042597 77 -----D-DKKWKEK---SLQDKAADISS--IL--SRKKFVLLLDDIWERIDLKEL---------------VSLFLTTRS- 127 (693)
Q Consensus 77 -----~-~~~~~~~---~~~~~~~~l~~--~l--~~~~~LlvlDdv~~~~~~~~~---------------~~iliTtr~- 127 (693)
+ +...... ...+.+..+.+ .. +++.+++|+|+++...+.+++ ...|+++-.
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~ 158 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPS 158 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccc
Confidence 1 0111111 12222222332 11 246899999999988776665 112222222
Q ss_pred -hhh-hhh---cCCceEEeccCCchHHHHHHHHHh
Q 042597 128 -VDV-CDQ---MDAEKLEVYSLANDEAWKLFQEMV 157 (693)
Q Consensus 128 -~~~-~~~---~~~~~~~l~~l~~~e~~~l~~~~~ 157 (693)
+.. ..+ .....+.++..+.+|..+++.+-.
T Consensus 159 ~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 159 CEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred cHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 221 111 222238889999999999987643
No 175
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.72 E-value=0.00018 Score=78.92 Aligned_cols=178 Identities=16% Similarity=0.238 Sum_probs=98.6
Q ss_pred CcccchHHHHHHHHHHhhhcC---CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEe-------------
Q 042597 10 HTVVGQELLLYRVWRCITDQE---KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVI------------- 73 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~---~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~------------- 73 (693)
++++|.++.++++..|+.... ...++++|+|++|+||||+++.++.... ++..-|++-.
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~-----~~~~Ew~npv~~~~~~~~~~~~~ 158 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG-----IQVQEWSNPTLPDFQKNDHKVTL 158 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh-----hHHHHHhhhhhhcccccccccch
Confidence 679999999999999987632 2346799999999999999999998761 1112221110
Q ss_pred ---ccCCchhhhhhchhHHHHHHHH---H----HccCcEEEEEeCccccc-----chhhh-----------hhhhhcccc
Q 042597 74 ---GFSDDKKWKEKSLQDKAADISS---I----LSRKKFVLLLDDIWERI-----DLKEL-----------VSLFLTTRS 127 (693)
Q Consensus 74 ---~~~~~~~~~~~~~~~~~~~l~~---~----l~~~~~LlvlDdv~~~~-----~~~~~-----------~~iliTtr~ 127 (693)
...................... . ..+++.+|+|||+++.- .+..+ .-|++||..
T Consensus 159 s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~TE~ 238 (637)
T TIGR00602 159 SLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIITES 238 (637)
T ss_pred hhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEecCC
Confidence 0000000111111222222211 1 13467799999995431 11111 224455522
Q ss_pred h-------------------hhhhhcCCceEEeccCCchHHHHHHHHHhhcccCCCCC----ChHHHHHHHHHHhCCcch
Q 042597 128 V-------------------DVCDQMDAEKLEVYSLANDEAWKLFQEMVDRSTLGSHT----SIPELAETLARECSGLPL 184 (693)
Q Consensus 128 ~-------------------~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~----~~~~~~~~I~~~~~G~Pl 184 (693)
. .+....+...+.+.+++..+..+.+.+.+......... .-.+....|+..++|--.
T Consensus 239 ~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDiR 318 (637)
T TIGR00602 239 LEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDIR 318 (637)
T ss_pred ccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChHH
Confidence 1 11112233348999999999888887776543211111 124677788888877654
Q ss_pred HHHHHHHH
Q 042597 185 ALKTVGRA 192 (693)
Q Consensus 185 al~~~~~~ 192 (693)
.+...-..
T Consensus 319 sAIn~LQf 326 (637)
T TIGR00602 319 SAINSLQF 326 (637)
T ss_pred HHHHHHHH
Confidence 44443343
No 176
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.70 E-value=0.00056 Score=64.45 Aligned_cols=159 Identities=15% Similarity=0.250 Sum_probs=93.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCc----------hhhhhhchh----HHHHHHHHH
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDD----------KKWKEKSLQ----DKAADISSI 96 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~----------~~~~~~~~~----~~~~~l~~~ 96 (693)
++-.++.|+|.-|+|||.+++...... . +.=-+++.++..-.... ........+ +....+...
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~-~--~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al 125 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASL-N--EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAAL 125 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhc-C--CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHH
Confidence 566799999999999999999665554 1 11112223332000000 001111222 222223322
Q ss_pred H-ccCc-EEEEEeCcccc--cchhhh-------------hhhhhcccch-------hhhhhc--CCce-EEeccCCchHH
Q 042597 97 L-SRKK-FVLLLDDIWER--IDLKEL-------------VSLFLTTRSV-------DVCDQM--DAEK-LEVYSLANDEA 149 (693)
Q Consensus 97 l-~~~~-~LlvlDdv~~~--~~~~~~-------------~~iliTtr~~-------~~~~~~--~~~~-~~l~~l~~~e~ 149 (693)
. +++| +.+++||+++. ...+.+ -+|+.....+ .+.... +... |.++|++.++.
T Consensus 126 ~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t 205 (269)
T COG3267 126 VKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAET 205 (269)
T ss_pred HHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHH
Confidence 2 5677 99999999755 233333 1123222211 011111 1122 89999999999
Q ss_pred HHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHH
Q 042597 150 WKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRA 192 (693)
Q Consensus 150 ~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~ 192 (693)
..+++.+........+-...++...|.....|.|.++..++..
T Consensus 206 ~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 206 GLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 9999998876653333445678899999999999999988764
No 177
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.68 E-value=0.00019 Score=73.15 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=34.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEe
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVI 73 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~ 73 (693)
....++|+|++|+|||||++.+++.. . +++|+..+|+.+.
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I-~-~nhfdv~v~VlLI 206 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAI-T-RNHPEVELIVLLI 206 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhh-c-ccCCceEEEEEEc
Confidence 45789999999999999999999987 2 3479999999884
No 178
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.68 E-value=0.00025 Score=77.29 Aligned_cols=162 Identities=15% Similarity=0.123 Sum_probs=87.5
Q ss_pred CcccchHHHHHHHHHHhh---h-------cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch
Q 042597 10 HTVVGQELLLYRVWRCIT---D-------QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK 79 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~---~-------~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 79 (693)
+.++|.++..+++.+.+. . +....+-+.++|++|+|||++|+.++... ...| +.++..++. .
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~---~~i~~~~~~--~ 126 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPF---FSISGSDFV--E 126 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCe---eeccHHHHH--H
Confidence 458898887776665543 1 11233568999999999999999999875 2222 111111100 0
Q ss_pred hhhhhchhHHHHHHHHHHccCcEEEEEeCcccccc------------h----hhh------------hhhhhcccchhh-
Q 042597 80 KWKEKSLQDKAADISSILSRKKFVLLLDDIWERID------------L----KEL------------VSLFLTTRSVDV- 130 (693)
Q Consensus 80 ~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~------------~----~~~------------~~iliTtr~~~~- 130 (693)
.............+....+..+.+++|||++.... . ..+ ..||.||.....
T Consensus 127 ~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~l 206 (495)
T TIGR01241 127 MFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVL 206 (495)
T ss_pred HHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhc
Confidence 00001111222223333345678999999965310 0 011 124444544321
Q ss_pred ----hhhcCCce-EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcc
Q 042597 131 ----CDQMDAEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLP 183 (693)
Q Consensus 131 ----~~~~~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 183 (693)
........ +.++..+.++-.+++..+........ ......+++.+.|..
T Consensus 207 d~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~----~~~l~~la~~t~G~s 260 (495)
T TIGR01241 207 DPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP----DVDLKAVARRTPGFS 260 (495)
T ss_pred CHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc----chhHHHHHHhCCCCC
Confidence 11112223 88888888888888888765433221 233557888887744
No 179
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00013 Score=78.21 Aligned_cols=142 Identities=20% Similarity=0.276 Sum_probs=85.3
Q ss_pred CCcccchHHHHHHHHHHhhhc----CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhh
Q 042597 9 DHTVVGQELLLYRVWRCITDQ----EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEK 84 (693)
Q Consensus 9 ~~~~vGr~~~~~~l~~~l~~~----~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 84 (693)
+..-+|.++..++|+++|..+ .-+.++++++||+|+|||+|++.++... ...|-- +.+-+..+..+...+
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al---~RkfvR---~sLGGvrDEAEIRGH 395 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL---GRKFVR---ISLGGVRDEAEIRGH 395 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh---CCCEEE---EecCccccHHHhccc
Confidence 456799999999999999763 2345899999999999999999999987 444411 112112111111000
Q ss_pred ---c----hhHHHHHHHHHHccCcEEEEEeCcccccc----------hhhh-------------------hhhh-hcccc
Q 042597 85 ---S----LQDKAADISSILSRKKFVLLLDDIWERID----------LKEL-------------------VSLF-LTTRS 127 (693)
Q Consensus 85 ---~----~~~~~~~l~~~l~~~~~LlvlDdv~~~~~----------~~~~-------------------~~il-iTtr~ 127 (693)
. ....+..+++ .+.+.-+++||+++.+.. ++.+ |.|+ |||-+
T Consensus 396 RRTYIGamPGrIiQ~mkk-a~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTAN 474 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKK-AGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATAN 474 (782)
T ss_pred cccccccCChHHHHHHHH-hCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecC
Confidence 0 1111222222 245778999999986621 1111 5555 44433
Q ss_pred h-h-hhhhc--CCceEEeccCCchHHHHHHHHHh
Q 042597 128 V-D-VCDQM--DAEKLEVYSLANDEAWKLFQEMV 157 (693)
Q Consensus 128 ~-~-~~~~~--~~~~~~l~~l~~~e~~~l~~~~~ 157 (693)
. + +.... +-..+++.+.+++|-.++-.++.
T Consensus 475 sl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 475 SLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred ccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 2 1 11111 11229999999999999887775
No 180
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.62 E-value=0.001 Score=67.09 Aligned_cols=160 Identities=13% Similarity=0.107 Sum_probs=89.6
Q ss_pred HHHHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhccc----------------cCCCCEEEEEEEeccCCchh
Q 042597 18 LLYRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCHQ----------------QHNFDVVIWAAVIGFSDDKK 80 (693)
Q Consensus 18 ~~~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~~----------------~~~f~~~~wv~~~~~~~~~~ 80 (693)
..+.+...+.. ++. +.+.++|+.|+||+++|..++...-.. ..|.|. .|+..........
T Consensus 12 ~~~~l~~~~~~--~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~-~~i~~~p~~~~~k 88 (319)
T PRK08769 12 AYDQTVAALDA--GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDL-QLVSFIPNRTGDK 88 (319)
T ss_pred HHHHHHHHHHc--CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCE-EEEecCCCccccc
Confidence 34455555544 444 568899999999999999999876211 112221 1221000000000
Q ss_pred hhhhchhHHHHHHHHHH-----ccCcEEEEEeCcccccc--hhhh----------hhh-hhcccchhhhhhcCCce--EE
Q 042597 81 WKEKSLQDKAADISSIL-----SRKKFVLLLDDIWERID--LKEL----------VSL-FLTTRSVDVCDQMDAEK--LE 140 (693)
Q Consensus 81 ~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~--~~~~----------~~i-liTtr~~~~~~~~~~~~--~~ 140 (693)
......-+.+..+.+.+ .+++=++|||+++.+.. ..++ ..+ ++|.....+.....+.. +.
T Consensus 89 ~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~ 168 (319)
T PRK08769 89 LRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLE 168 (319)
T ss_pred ccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEee
Confidence 00011112222333333 34556899999987732 2222 334 44444555655555544 88
Q ss_pred eccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHH
Q 042597 141 VYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTV 189 (693)
Q Consensus 141 l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~ 189 (693)
+.+++.+++.+.+... + .+ ...+..++..++|.|+.+..+
T Consensus 169 ~~~~~~~~~~~~L~~~-~-----~~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 169 FKLPPAHEALAWLLAQ-G-----VS---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred CCCcCHHHHHHHHHHc-C-----CC---hHHHHHHHHHcCCCHHHHHHH
Confidence 8899999999888653 1 11 344678899999999766443
No 181
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.62 E-value=1.3e-05 Score=67.33 Aligned_cols=108 Identities=18% Similarity=0.231 Sum_probs=65.5
Q ss_pred ceeeeccccchhhc----cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeC
Q 042597 342 KRVSLMDNRILRLL----EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLS 417 (693)
Q Consensus 342 ~~l~l~~~~~~~~~----~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~ 417 (693)
..++++++.+..++ .+....+|...+|++|.+..+|+.+-.+++-+..|++++| .+..+|..+..++.|+.|+++
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccc
Confidence 33455555544332 2455566666666666666666665555566666666666 666666666666666666666
Q ss_pred CCCCCccChhhhcCCCCcEeccCCcccccccccc
Q 042597 418 STNITGLPQDLKALEKLRYLNLDHAYKLSIIPHK 451 (693)
Q Consensus 418 ~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~~p~~ 451 (693)
.|.+...|.-+..|.+|-.|+..+| -...+|..
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 6666666666656666666666555 44455543
No 182
>PRK12377 putative replication protein; Provisional
Probab=97.57 E-value=0.00018 Score=69.78 Aligned_cols=76 Identities=18% Similarity=0.136 Sum_probs=43.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHccCcEEEEEeCccc
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILSRKKFVLLLDDIWE 111 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~ 111 (693)
+...+.++|++|+|||.||.++++.. ......++++++.++.......... ......+.+.+ .+--|+||||+..
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l---~~~g~~v~~i~~~~l~~~l~~~~~~-~~~~~~~l~~l-~~~dLLiIDDlg~ 174 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRL---LAKGRSVIVVTVPDVMSRLHESYDN-GQSGEKFLQEL-CKVDLLVLDEIGI 174 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHH---HHcCCCeEEEEHHHHHHHHHHHHhc-cchHHHHHHHh-cCCCEEEEcCCCC
Confidence 34689999999999999999999988 2333345677663322211000000 00111222222 2445899999953
Q ss_pred c
Q 042597 112 R 112 (693)
Q Consensus 112 ~ 112 (693)
.
T Consensus 175 ~ 175 (248)
T PRK12377 175 Q 175 (248)
T ss_pred C
Confidence 3
No 183
>PRK08116 hypothetical protein; Validated
Probab=97.56 E-value=0.00021 Score=70.61 Aligned_cols=73 Identities=23% Similarity=0.267 Sum_probs=42.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhh-hhchhHHHHHHHHHHccCcEEEEEeCcc
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWK-EKSLQDKAADISSILSRKKFVLLLDDIW 110 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~LlvlDdv~ 110 (693)
.-+.++|.+|+|||.||.++++.. ..+...++++++.++....... ..........+.+.+.+-. |+||||+.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l---~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~d-lLviDDlg 188 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANEL---IEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNAD-LLILDDLG 188 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH---HHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCC-EEEEeccc
Confidence 458999999999999999999997 2223456677653322100000 0000111222334444433 89999995
No 184
>PRK08118 topology modulation protein; Reviewed
Probab=97.54 E-value=0.00013 Score=66.54 Aligned_cols=67 Identities=21% Similarity=0.506 Sum_probs=43.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHccCcEEEEEeCcc
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILSRKKFVLLLDDIW 110 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~ 110 (693)
..|.|+|++|+||||+|+.+++...-..-+||..+|-.- ....+.++....+.+.+++.. .|+|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~--------w~~~~~~~~~~~~~~~~~~~~--wVidG~~ 68 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPN--------WEGVPKEEQITVQNELVKEDE--WIIDGNY 68 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccC--------CcCCCHHHHHHHHHHHhcCCC--EEEeCCc
Confidence 358999999999999999999987322356777776421 111122234444555565555 4778753
No 185
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.53 E-value=0.00024 Score=68.71 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=50.2
Q ss_pred HHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHH
Q 042597 18 LLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSIL 97 (693)
Q Consensus 18 ~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l 97 (693)
.+..+.++...-..+...+.++|.+|+|||+||.++++.. ...-..++++++.+....-...-...+.....+.+.+
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l---~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l 160 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNEL---LLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDL 160 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHh
Confidence 3444444443322234578999999999999999999987 2233456666663332210000000011112233444
Q ss_pred ccCcEEEEEeCcccc
Q 042597 98 SRKKFVLLLDDIWER 112 (693)
Q Consensus 98 ~~~~~LlvlDdv~~~ 112 (693)
. +.=++||||+...
T Consensus 161 ~-~~dlLvIDDig~~ 174 (244)
T PRK07952 161 S-NVDLLVIDEIGVQ 174 (244)
T ss_pred c-cCCEEEEeCCCCC
Confidence 4 3448888999754
No 186
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.51 E-value=4.7e-05 Score=84.80 Aligned_cols=104 Identities=21% Similarity=0.212 Sum_probs=50.2
Q ss_pred Cccceeeccccc-ccccccccc-CCCCcccEEEccCCcch-hhchHhhhccccccEEeeCCCCCCccChhhhcCCCCcEe
Q 042597 361 SRLITLLLYENW-IEEITDGFF-QPMSSLRVLALGRNFFL-SKLRSGIANLVSLHHLDLSSTNITGLPQDLKALEKLRYL 437 (693)
Q Consensus 361 ~~L~~L~l~~~~-l~~~~~~~~-~~l~~L~~L~L~~~~~~-~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L 437 (693)
.+|+.|++.+.. +..-++..+ ..||+|+.|.+++-... +++..-..+++||..||+|+++++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 456666666542 111111111 23666666666654221 12223344566666666666666666 456666666666
Q ss_pred ccCCcccccccc--cccccCCCcccccccccc
Q 042597 438 NLDHAYKLSIIP--HKLKSGFSKLEALRLLEC 467 (693)
Q Consensus 438 ~l~~~~~l~~~p--~~~~~~l~~L~~L~l~~~ 467 (693)
.+.+=. ..... .+ +.+|++|+.|+++..
T Consensus 201 ~mrnLe-~e~~~~l~~-LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 201 SMRNLE-FESYQDLID-LFNLKKLRVLDISRD 230 (699)
T ss_pred hccCCC-CCchhhHHH-HhcccCCCeeecccc
Confidence 554431 11111 11 234555555555544
No 187
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0014 Score=67.80 Aligned_cols=148 Identities=20% Similarity=0.263 Sum_probs=91.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHH----ccCcEEEEE
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSIL----SRKKFVLLL 106 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~~Llvl 106 (693)
.+...|.+.|++|+|||+||.+++.. ..|-.+--+.- ......+.......+++.. +..--.||+
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~-----S~FPFvKiiSp------e~miG~sEsaKc~~i~k~F~DAYkS~lsiivv 604 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALS-----SDFPFVKIISP------EDMIGLSESAKCAHIKKIFEDAYKSPLSIIVV 604 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhh-----cCCCeEEEeCh------HHccCccHHHHHHHHHHHHHHhhcCcceEEEE
Confidence 35677889999999999999999875 34544333322 2222233444444454444 455678999
Q ss_pred eCcccccchhhh-------------------------hhhhhcccchhhhhhcCCce-----EEeccCCc-hHHHHHHHH
Q 042597 107 DDIWERIDLKEL-------------------------VSLFLTTRSVDVCDQMDAEK-----LEVYSLAN-DEAWKLFQE 155 (693)
Q Consensus 107 Ddv~~~~~~~~~-------------------------~~iliTtr~~~~~~~~~~~~-----~~l~~l~~-~e~~~l~~~ 155 (693)
||++...+|-.+ --|+-||....+...++... +.++.++. ++..+.+++
T Consensus 605 DdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 605 DDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred cchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH
Confidence 999998887776 12556777777777765432 88888887 667666655
Q ss_pred HhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhc
Q 042597 156 MVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRAMKS 195 (693)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~l~~ 195 (693)
.- ...+.+.+..+.+...++ +-.+|+.+-..+..
T Consensus 685 ~n----~fsd~~~~~~~~~~~~~~--~~vgIKklL~lie~ 718 (744)
T KOG0741|consen 685 LN----IFSDDEVRAIAEQLLSKK--VNVGIKKLLMLIEM 718 (744)
T ss_pred cc----CCCcchhHHHHHHHhccc--cchhHHHHHHHHHH
Confidence 32 122333455566666665 33445544444443
No 188
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.50 E-value=0.0028 Score=62.17 Aligned_cols=178 Identities=16% Similarity=0.184 Sum_probs=90.9
Q ss_pred Ccccch---HHHHHHHHHHhhh-cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCC---CEEEEEEEeccCCc----
Q 042597 10 HTVVGQ---ELLLYRVWRCITD-QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNF---DVVIWAAVIGFSDD---- 78 (693)
Q Consensus 10 ~~~vGr---~~~~~~l~~~l~~-~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f---~~~~wv~~~~~~~~---- 78 (693)
+.+||- .+.++.+.+.+.. ...+.+-+.|+|.+|+|||++++++++.+....+.- -.++.+.+-...+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y 113 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFY 113 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHH
Confidence 456664 3344555555554 234667899999999999999999998873222111 12334433111110
Q ss_pred ---------hhhhhhchhHHHHHHHHHHcc-CcEEEEEeCccccc-----chh----hh---------hhhhhc------
Q 042597 79 ---------KKWKEKSLQDKAADISSILSR-KKFVLLLDDIWERI-----DLK----EL---------VSLFLT------ 124 (693)
Q Consensus 79 ---------~~~~~~~~~~~~~~l~~~l~~-~~~LlvlDdv~~~~-----~~~----~~---------~~iliT------ 124 (693)
..........+.....+.++. +-=++|||++++.- +-. .+ +-|.+-
T Consensus 114 ~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~ 193 (302)
T PF05621_consen 114 SAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYR 193 (302)
T ss_pred HHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHH
Confidence 111112223333334444444 22388999998751 111 11 222232
Q ss_pred --ccchhhhhhcCCceEEeccCCchHH-HHHHHHHhhcc--cCCCCCChHHHHHHHHHHhCCcchHHHHH
Q 042597 125 --TRSVDVCDQMDAEKLEVYSLANDEA-WKLFQEMVDRS--TLGSHTSIPELAETLARECSGLPLALKTV 189 (693)
Q Consensus 125 --tr~~~~~~~~~~~~~~l~~l~~~e~-~~l~~~~~~~~--~~~~~~~~~~~~~~I~~~~~G~Plal~~~ 189 (693)
..+...+.++.. +.++....++- ..|+...-..- ...+.-...+++..|...++|..--+..+
T Consensus 194 al~~D~QLa~RF~~--~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 194 ALRTDPQLASRFEP--FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HhccCHHHHhccCC--ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 333444444433 45555555444 33443322111 11222334688999999999987544433
No 189
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.50 E-value=0.0013 Score=69.11 Aligned_cols=109 Identities=25% Similarity=0.314 Sum_probs=70.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHccCcEEEEEeCcccccc
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILSRKKFVLLLDDIWERID 114 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~ 114 (693)
++.|+|+.++||||+++.+.... .+. .+++...+... ......+....+.+.-..++..++||+|+....
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~---~~~---~iy~~~~d~~~----~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~ 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGL---LEE---IIYINFDDLRL----DRIELLDLLRAYIELKEREKSYIFLDEIQNVPD 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhC---Ccc---eEEEEecchhc----chhhHHHHHHHHHHhhccCCceEEEecccCchh
Confidence 99999999999999996666654 222 56665533332 111122222233332233788999999999999
Q ss_pred hhhh-------h--hhhhcccchhh-----hhhcCCce--EEeccCCchHHHHHH
Q 042597 115 LKEL-------V--SLFLTTRSVDV-----CDQMDAEK--LEVYSLANDEAWKLF 153 (693)
Q Consensus 115 ~~~~-------~--~iliTtr~~~~-----~~~~~~~~--~~l~~l~~~e~~~l~ 153 (693)
|... . ++++|+.+... +....... +.+.||+..|-..+-
T Consensus 109 W~~~lk~l~d~~~~~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 109 WERALKYLYDRGNLDVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred HHHHHHHHHccccceEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 8877 2 46777776544 22233333 899999999987653
No 190
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.49 E-value=3.9e-05 Score=85.44 Aligned_cols=106 Identities=23% Similarity=0.261 Sum_probs=65.9
Q ss_pred CcccEEEccCCcchhh-chHhhh-ccccccEEeeCCCCCCc--cChhhhcCCCCcEeccCCcccccccccccccCCCccc
Q 042597 385 SSLRVLALGRNFFLSK-LRSGIA-NLVSLHHLDLSSTNITG--LPQDLKALEKLRYLNLDHAYKLSIIPHKLKSGFSKLE 460 (693)
Q Consensus 385 ~~L~~L~L~~~~~~~~-~p~~~~-~l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L~ 460 (693)
.+|++||+++...+.. -|..++ .||+|+.|.+++-.+.. +..-..++++|..||++++ .+..+.. +++|++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl~G--IS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNLSG--ISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCcHH--HhccccHH
Confidence 5677777777643322 233343 37777777777754433 3444566777888888777 6666632 67777777
Q ss_pred cccccccCCCccccccCcccccCcchhHHhhccCCCCceeEEEeec
Q 042597 461 ALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNVLSWSFRS 506 (693)
Q Consensus 461 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~ 506 (693)
.|.+.+-.+. ....+..+-+|++|+.||++...
T Consensus 199 ~L~mrnLe~e-------------~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 199 VLSMRNLEFE-------------SYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHhccCCCCC-------------chhhHHHHhcccCCCeeeccccc
Confidence 7777654433 22456667777777777777543
No 191
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00023 Score=75.97 Aligned_cols=142 Identities=19% Similarity=0.235 Sum_probs=84.6
Q ss_pred CCcccchHHHHHHHHHHhhhc----CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhh
Q 042597 9 DHTVVGQELLLYRVWRCITDQ----EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEK 84 (693)
Q Consensus 9 ~~~~vGr~~~~~~l~~~l~~~----~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 84 (693)
+..-+|.++..+.|.+++..+ +-+.++++++||+|+|||++|+.++..+ ...|. . +.+-++.+..+....
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL---nRkFf-R--fSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL---NRKFF-R--FSVGGMTDVAEIKGH 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh---CCceE-E--EeccccccHHhhccc
Confidence 456799999999999999763 3456899999999999999999999987 33331 1 112111111111000
Q ss_pred ---ch----hHHHHHHHHHHccCcEEEEEeCcccccc---------hhhh--------------------hhhhhcccch
Q 042597 85 ---SL----QDKAADISSILSRKKFVLLLDDIWERID---------LKEL--------------------VSLFLTTRSV 128 (693)
Q Consensus 85 ---~~----~~~~~~l~~~l~~~~~LlvlDdv~~~~~---------~~~~--------------------~~iliTtr~~ 128 (693)
.. ...+..++. .+...-|+.||+|+.... +-++ |+|++...-.
T Consensus 484 RRTYVGAMPGkiIq~LK~-v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN 562 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKK-VKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTAN 562 (906)
T ss_pred ceeeeccCChHHHHHHHh-hCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEecc
Confidence 11 112222222 244667999999986521 1111 7777444433
Q ss_pred hhhhhc-----CCceEEeccCCchHHHHHHHHHh
Q 042597 129 DVCDQM-----DAEKLEVYSLANDEAWKLFQEMV 157 (693)
Q Consensus 129 ~~~~~~-----~~~~~~l~~l~~~e~~~l~~~~~ 157 (693)
.+..-. +-..|++.+...+|-..+-.++.
T Consensus 563 ~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 563 VIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred ccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 221111 11128999999999888877664
No 192
>PRK07261 topology modulation protein; Provisional
Probab=97.46 E-value=0.00026 Score=64.99 Aligned_cols=66 Identities=24% Similarity=0.509 Sum_probs=43.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHccCcEEEEEeCcc
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILSRKKFVLLLDDIW 110 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~ 110 (693)
.|+|+|++|+||||||++++....-..-+.|...|-. .....+.++....+.+.+.+.+ .|+|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~--wIidg~~ 67 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQP--------NWQERDDDDMIADISNFLLKHD--WIIDGNY 67 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecc--------ccccCCHHHHHHHHHHHHhCCC--EEEcCcc
Confidence 5899999999999999999887511122345555531 1223344566666777777766 6888764
No 193
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.46 E-value=0.0029 Score=63.94 Aligned_cols=150 Identities=12% Similarity=0.099 Sum_probs=87.9
Q ss_pred HHHHHHHhhhcCCC-eeEEEEEcCCCCcHHHHHHHHHhhhcccc-------------------CCCCEEEEEEEeccCCc
Q 042597 19 LYRVWRCITDQEKN-RRIIGLYGTGGVGKTTILTQVNNNFCHQQ-------------------HNFDVVIWAAVIGFSDD 78 (693)
Q Consensus 19 ~~~l~~~l~~~~~~-~~vv~i~G~~GiGKTtla~~~~~~~~~~~-------------------~~f~~~~wv~~~~~~~~ 78 (693)
.+.+...+.. ++ .+...++|+.|+||+++|..++...-... .|.|... +. .
T Consensus 11 ~~~l~~~~~~--~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~-i~--p---- 81 (325)
T PRK06871 11 YQQITQAFQQ--GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHI-LE--P---- 81 (325)
T ss_pred HHHHHHHHHc--CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEE-Ec--c----
Confidence 4455555554 34 46677999999999999999998772211 1222211 10 0
Q ss_pred hhhhhhchhHHHHHHHHHH-----ccCcEEEEEeCcccccc--hhhh----------hh-hhhcccchhhhhhcCCce--
Q 042597 79 KKWKEKSLQDKAADISSIL-----SRKKFVLLLDDIWERID--LKEL----------VS-LFLTTRSVDVCDQMDAEK-- 138 (693)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~--~~~~----------~~-iliTtr~~~~~~~~~~~~-- 138 (693)
........+ .+..+.+.+ .+++=++|+|+++.+.. ..++ .. |++|+....+.....++.
T Consensus 82 ~~~~~I~id-~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 82 IDNKDIGVD-QVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160 (325)
T ss_pred ccCCCCCHH-HHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceE
Confidence 000111122 222333333 34555888999997743 2222 33 445555556665555444
Q ss_pred EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHH
Q 042597 139 LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLAL 186 (693)
Q Consensus 139 ~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal 186 (693)
+.+.+++.+++.+.+....... ...+...++.++|.|..+
T Consensus 161 ~~~~~~~~~~~~~~L~~~~~~~--------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQSSAE--------ISEILTALRINYGRPLLA 200 (325)
T ss_pred EeCCCCCHHHHHHHHHHHhccC--------hHHHHHHHHHcCCCHHHH
Confidence 8999999999999887653211 234667788999999533
No 194
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.45 E-value=0.00064 Score=64.93 Aligned_cols=37 Identities=24% Similarity=0.412 Sum_probs=31.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
.-.++|.|..|+||||++..+.... .+.|..++++.-
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~---~~~f~~I~l~t~ 49 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYL---RHKFDHIFLITP 49 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh---cccCCEEEEEec
Confidence 3478899999999999999999877 788887777644
No 195
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00053 Score=75.81 Aligned_cols=145 Identities=15% Similarity=0.197 Sum_probs=91.4
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccC----CCCEEEEEEEeccCCchhhhhhc
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQH----NFDVVIWAAVIGFSDDKKWKEKS 85 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~~ 85 (693)
++.+||++++.++++.|....++.+ .++|.+|+|||+++.-++.+.....- +...++-.++..+.. ...-..+
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNP--vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvA-GakyRGe 246 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNP--VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVA-GAKYRGE 246 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCC--eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhc-cccccCc
Confidence 6789999999999999988555544 46799999999999999998732211 111222233322222 2222334
Q ss_pred hhHHHHHHHHHHc-cCcEEEEEeCcccccc--------hhh--h----------hhhhhcccchhh-------hhhcCCc
Q 042597 86 LQDKAADISSILS-RKKFVLLLDDIWERID--------LKE--L----------VSLFLTTRSVDV-------CDQMDAE 137 (693)
Q Consensus 86 ~~~~~~~l~~~l~-~~~~LlvlDdv~~~~~--------~~~--~----------~~iliTtr~~~~-------~~~~~~~ 137 (693)
.++..+.+.+.++ ..++.+++|++++..- .++ + -.|-.||-++.- +-..+..
T Consensus 247 FEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ 326 (786)
T COG0542 247 FEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKYIEKDAALERRFQ 326 (786)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHHhhhchHHHhcCc
Confidence 5555555555554 4589999999875511 221 1 345567666431 2222334
Q ss_pred eEEeccCCchHHHHHHHHHh
Q 042597 138 KLEVYSLANDEAWKLFQEMV 157 (693)
Q Consensus 138 ~~~l~~l~~~e~~~l~~~~~ 157 (693)
.+.+.+.+.+++..+++-..
T Consensus 327 ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 327 KVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred eeeCCCCCHHHHHHHHHHHH
Confidence 48999999999999886554
No 196
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.44 E-value=0.00051 Score=60.91 Aligned_cols=79 Identities=20% Similarity=0.167 Sum_probs=45.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchh-----------hhhhchhHHHHHHHHHHccC-
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKK-----------WKEKSLQDKAADISSILSRK- 100 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~-----------~~~~~~~~~~~~l~~~l~~~- 100 (693)
...+.|+|++|+||||+|+.++... ......++++.......... ............+....+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL---GPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLK 78 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc---CCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 3678999999999999999999987 22223345554422211000 01111222222333444443
Q ss_pred cEEEEEeCcccccc
Q 042597 101 KFVLLLDDIWERID 114 (693)
Q Consensus 101 ~~LlvlDdv~~~~~ 114 (693)
..++++|+++....
T Consensus 79 ~~viiiDei~~~~~ 92 (148)
T smart00382 79 PDVLILDEITSLLD 92 (148)
T ss_pred CCEEEEECCcccCC
Confidence 38999999987643
No 197
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.43 E-value=0.0016 Score=66.76 Aligned_cols=134 Identities=13% Similarity=0.133 Sum_probs=78.1
Q ss_pred cccc-hHHHHHHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhcccc-------------------CCCCEEEE
Q 042597 11 TVVG-QELLLYRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCHQQ-------------------HNFDVVIW 69 (693)
Q Consensus 11 ~~vG-r~~~~~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~~~-------------------~~f~~~~w 69 (693)
..+| .+..++.+...+.. ++. +...++|+.|+||||+|..+++..-... .|.|....
T Consensus 6 ~i~~~q~~~~~~L~~~~~~--~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAK--NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLV 83 (329)
T ss_pred HHHhhHHHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEe
Confidence 4566 67777777777765 444 5669999999999999999988762111 13332221
Q ss_pred EEEeccCCchhhhhhchhHHHHHHHHHH-----ccCcEEEEEeCcccccc--hhhh----------hhhhhcc-cchhhh
Q 042597 70 AAVIGFSDDKKWKEKSLQDKAADISSIL-----SRKKFVLLLDDIWERID--LKEL----------VSLFLTT-RSVDVC 131 (693)
Q Consensus 70 v~~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~--~~~~----------~~iliTt-r~~~~~ 131 (693)
.. .......++. ..+.+.+ .+.+=++|+|+++.... ...+ ..+|++| ....+.
T Consensus 84 ~~--------~~~~i~id~i-r~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll 154 (329)
T PRK08058 84 AP--------DGQSIKKDQI-RYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQIL 154 (329)
T ss_pred cc--------ccccCCHHHH-HHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCc
Confidence 10 0111112222 2222222 34445789999986643 2222 3344444 444454
Q ss_pred hhcCCce--EEeccCCchHHHHHHHH
Q 042597 132 DQMDAEK--LEVYSLANDEAWKLFQE 155 (693)
Q Consensus 132 ~~~~~~~--~~l~~l~~~e~~~l~~~ 155 (693)
.....+. +.+.+++.++..+.+..
T Consensus 155 ~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 155 PTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 4444443 89999999999887764
No 198
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.42 E-value=0.00024 Score=72.95 Aligned_cols=82 Identities=20% Similarity=0.276 Sum_probs=53.3
Q ss_pred cccccceeeeccccchhhccCCCCCccceeecccc-ccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEe
Q 042597 337 EWEGAKRVSLMDNRILRLLEIPTCSRLITLLLYEN-WIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLD 415 (693)
Q Consensus 337 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~ 415 (693)
.+.+++.|++.+|.+..+|.++ .+|++|.+.+| .++.+|.. + ..+|++|++++|..+..+|. +|+.|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~LP--~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPVLP--NELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPE------SVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCCCC--CCCcEEEccCCCCcccCCch-h--hhhhhheEccCccccccccc------ccceEE
Confidence 3467788888888777776433 36888888876 45444432 2 35788888888866666664 366666
Q ss_pred eCCCC---CCccChhhh
Q 042597 416 LSSTN---ITGLPQDLK 429 (693)
Q Consensus 416 l~~~~---i~~lp~~~~ 429 (693)
++.+. +..+|+++.
T Consensus 119 L~~n~~~~L~~LPssLk 135 (426)
T PRK15386 119 IKGSATDSIKNVPNGLT 135 (426)
T ss_pred eCCCCCcccccCcchHh
Confidence 66554 455665543
No 199
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.37 E-value=0.0071 Score=64.84 Aligned_cols=164 Identities=16% Similarity=0.113 Sum_probs=86.3
Q ss_pred CcccchHHHHHHHHHHhhh--------cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhh
Q 042597 10 HTVVGQELLLYRVWRCITD--------QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKW 81 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~--------~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 81 (693)
.++.|.+...+.+.+.... +-...+-|.++|++|+|||.+|+.+++.+ .-.| +-++...... . .
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~---~~~~---~~l~~~~l~~-~-~ 299 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW---QLPL---LRLDVGKLFG-G-I 299 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCE---EEEEhHHhcc-c-c
Confidence 3466777666555543211 01234668999999999999999999987 3222 1122211111 0 0
Q ss_pred hhhchhHHHHHHHHHHccCcEEEEEeCccccc-------c---hh----hh----------hhhhhcccchhh-----hh
Q 042597 82 KEKSLQDKAADISSILSRKKFVLLLDDIWERI-------D---LK----EL----------VSLFLTTRSVDV-----CD 132 (693)
Q Consensus 82 ~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-------~---~~----~~----------~~iliTtr~~~~-----~~ 132 (693)
...........+...-...++++++|+++..- + .. .+ ..||.||.+... ..
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR 379 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILR 379 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhC
Confidence 00011111112222223578999999997431 0 00 01 124455554332 11
Q ss_pred hcCCce-EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcc
Q 042597 133 QMDAEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLP 183 (693)
Q Consensus 133 ~~~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 183 (693)
....+. +.++.-+.++-.++|..+..+....... ....+.+++.+.|.-
T Consensus 380 ~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~--~~dl~~La~~T~GfS 429 (489)
T CHL00195 380 KGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK--KYDIKKLSKLSNKFS 429 (489)
T ss_pred CCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc--ccCHHHHHhhcCCCC
Confidence 112223 7777778888888998877654311110 223567777777765
No 200
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.34 E-value=0.0018 Score=74.20 Aligned_cols=161 Identities=19% Similarity=0.229 Sum_probs=88.8
Q ss_pred CcccchHHHHHHHHHHhhh-----------cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCc
Q 042597 10 HTVVGQELLLYRVWRCITD-----------QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDD 78 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 78 (693)
..+.|.+...+++.+.+.- +-...+-+.++|++|+|||++|+++++.. ...| +.+...+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~---~~~f---i~v~~~~l~~- 525 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES---GANF---IAVRGPEILS- 525 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---CCCE---EEEehHHHhh-
Confidence 4467888887777776541 11234558899999999999999999976 3222 2222211111
Q ss_pred hhhhhhchhHHHHHHH-HHHccCcEEEEEeCccccc---------c-----hhhh------------hhhhhcccchhhh
Q 042597 79 KKWKEKSLQDKAADIS-SILSRKKFVLLLDDIWERI---------D-----LKEL------------VSLFLTTRSVDVC 131 (693)
Q Consensus 79 ~~~~~~~~~~~~~~l~-~~l~~~~~LlvlDdv~~~~---------~-----~~~~------------~~iliTtr~~~~~ 131 (693)
...... +..+..+. ..-+..++++++|+++... . ..++ ..||.||......
T Consensus 526 -~~vGes-e~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~l 603 (733)
T TIGR01243 526 -KWVGES-EKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDIL 603 (733)
T ss_pred -cccCcH-HHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhC
Confidence 000011 11222222 2224567999999997431 0 1111 1245555444332
Q ss_pred hh--c---CCce-EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcc
Q 042597 132 DQ--M---DAEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLP 183 (693)
Q Consensus 132 ~~--~---~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~P 183 (693)
.. . +.+. +.++..+.++-.++|..+........+ .....+++.+.|.-
T Consensus 604 d~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~----~~l~~la~~t~g~s 657 (733)
T TIGR01243 604 DPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAED----VDLEELAEMTEGYT 657 (733)
T ss_pred CHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCcc----CCHHHHHHHcCCCC
Confidence 21 1 2222 788888888888898766544332222 22566777887755
No 201
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.31 E-value=0.00022 Score=65.81 Aligned_cols=75 Identities=25% Similarity=0.297 Sum_probs=42.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHccCcEEEEEeCccc
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILSRKKFVLLLDDIWE 111 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~ 111 (693)
+..-+.++|++|+|||.||.++++...+ +-..+.|+...++...-.. ....... ..+.+.+.+ -=|+||||+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~---~g~~v~f~~~~~L~~~l~~-~~~~~~~-~~~~~~l~~-~dlLilDDlG~ 119 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR---KGYSVLFITASDLLDELKQ-SRSDGSY-EELLKRLKR-VDLLILDDLGY 119 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEEHHHHHHHHHC-CHCCTTH-CHHHHHHHT-SSCEEEETCTS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc---CCcceeEeecCceeccccc-cccccch-hhhcCcccc-ccEecccccce
Confidence 4567999999999999999999998722 3344677776433221111 1111111 112223332 34778999975
Q ss_pred c
Q 042597 112 R 112 (693)
Q Consensus 112 ~ 112 (693)
.
T Consensus 120 ~ 120 (178)
T PF01695_consen 120 E 120 (178)
T ss_dssp S
T ss_pred e
Confidence 4
No 202
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.31 E-value=0.00075 Score=58.74 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.-.++|+|++|+||||+++++++..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3568999999999999999999987
No 203
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.29 E-value=0.0019 Score=54.48 Aligned_cols=88 Identities=16% Similarity=0.195 Sum_probs=55.3
Q ss_pred CcccchHHHHHHHHHHhhh-----cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEE-EEEEEeccCCchhhhh
Q 042597 10 HTVVGQELLLYRVWRCITD-----QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVV-IWAAVIGFSDDKKWKE 83 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~-----~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~-~wv~~~~~~~~~~~~~ 83 (693)
..++|..-..+.+.+.+.+ ..++.-|+.++|++|+|||-+++.+++..-+..-+-+++ .++....++. .....
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~-~~~v~ 103 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPH-NSNVD 103 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCC-chHHH
Confidence 4578888777777777654 245678999999999999999999999853332233333 3333333333 33333
Q ss_pred hchhHHHHHHHHHHc
Q 042597 84 KSLQDKAADISSILS 98 (693)
Q Consensus 84 ~~~~~~~~~l~~~l~ 98 (693)
.-..++...+++.++
T Consensus 104 ~Yk~~L~~~I~~~v~ 118 (127)
T PF06309_consen 104 EYKEQLKSWIRGNVS 118 (127)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555555555553
No 204
>PRK08181 transposase; Validated
Probab=97.28 E-value=0.00053 Score=67.40 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=28.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
...+.++|++|+|||.||..+++.. ......++|+.+
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a---~~~g~~v~f~~~ 142 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLAL---IENGWRVLFTRT 142 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHH---HHcCCceeeeeH
Confidence 4569999999999999999999976 222334566655
No 205
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.28 E-value=0.00024 Score=64.15 Aligned_cols=106 Identities=26% Similarity=0.300 Sum_probs=67.6
Q ss_pred CCcccEEEccCCcchhhchHhhhccccccEEeeCCCCCCccChhhhc-CCCCcEeccCCccccccc---ccccccCCCcc
Q 042597 384 MSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTNITGLPQDLKA-LEKLRYLNLDHAYKLSII---PHKLKSGFSKL 459 (693)
Q Consensus 384 l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~-l~~L~~L~l~~~~~l~~~---p~~~~~~l~~L 459 (693)
+.....+||++| .+..++ .+..+..|.+|.+++|+|+.+.+.+.. +++|+.|.+.+| .+..+ .+ +..+++|
T Consensus 41 ~d~~d~iDLtdN-dl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~p--La~~p~L 115 (233)
T KOG1644|consen 41 LDQFDAIDLTDN-DLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDP--LASCPKL 115 (233)
T ss_pred ccccceeccccc-chhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcch--hccCCcc
Confidence 345667778777 565555 566777888888888888887666654 567888888777 34333 33 4567788
Q ss_pred ccccccccCCCccccccCcccccCcchhHHhhccCCCCceeEEEee
Q 042597 460 EALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNVLSWSFR 505 (693)
Q Consensus 460 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~ 505 (693)
++|.+.+|..... ..--..-+..+++|+.++...-
T Consensus 116 ~~Ltll~Npv~~k-----------~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 116 EYLTLLGNPVEHK-----------KNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ceeeecCCchhcc-----------cCceeEEEEecCcceEeehhhh
Confidence 8888877764432 1111223456677777776543
No 206
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.27 E-value=0.0004 Score=70.15 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=41.9
Q ss_pred cccchHHHHHHHHHHhhhc----CCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 11 TVVGQELLLYRVWRCITDQ----EKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 11 ~~vGr~~~~~~l~~~l~~~----~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.++|.++.++++++++... +.+.++++++|++|+||||||..+++..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999999762 2356889999999999999999999988
No 207
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.25 E-value=0.0046 Score=63.16 Aligned_cols=152 Identities=11% Similarity=0.058 Sum_probs=90.2
Q ss_pred HHHHHHHHhhhcCCC-eeEEEEEcCCCCcHHHHHHHHHhhhccc-------------------cCCCCEEEEEEEeccCC
Q 042597 18 LLYRVWRCITDQEKN-RRIIGLYGTGGVGKTTILTQVNNNFCHQ-------------------QHNFDVVIWAAVIGFSD 77 (693)
Q Consensus 18 ~~~~l~~~l~~~~~~-~~vv~i~G~~GiGKTtla~~~~~~~~~~-------------------~~~f~~~~wv~~~~~~~ 77 (693)
..+++...+.. ++ .+...++|+.|+||+++|..++...-.. ..|.|...-.. .
T Consensus 10 ~~~~l~~~~~~--~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p-----~ 82 (334)
T PRK07993 10 DYEQLVGSYQA--GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP-----E 82 (334)
T ss_pred HHHHHHHHHHc--CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec-----c
Confidence 34556666655 33 4677899999999999999998876211 12334321111 0
Q ss_pred chhhhhhchhHHHHHHHHHH-----ccCcEEEEEeCcccccc--hhhh-----------hhhhhcccchhhhhhcCCce-
Q 042597 78 DKKWKEKSLQDKAADISSIL-----SRKKFVLLLDDIWERID--LKEL-----------VSLFLTTRSVDVCDQMDAEK- 138 (693)
Q Consensus 78 ~~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~--~~~~-----------~~iliTtr~~~~~~~~~~~~- 138 (693)
........++ +..+.+.+ .+++=++|||+++.+.. ..++ --|++|.+...+.....++.
T Consensus 83 -~~~~~I~idq-iR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq 160 (334)
T PRK07993 83 -KGKSSLGVDA-VREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCR 160 (334)
T ss_pred -cccccCCHHH-HHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccc
Confidence 0001112222 22233333 35566899999987743 2222 33555555566665544444
Q ss_pred -EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHH
Q 042597 139 -LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLAL 186 (693)
Q Consensus 139 -~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal 186 (693)
+.+.+++.+++.+.+.+..+ . + ...+..+++.++|.|..+
T Consensus 161 ~~~~~~~~~~~~~~~L~~~~~-~----~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 161 LHYLAPPPEQYALTWLSREVT-M----S---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred cccCCCCCHHHHHHHHHHccC-C----C---HHHHHHHHHHcCCCHHHH
Confidence 88999999999988865321 1 1 345778899999999644
No 208
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.21 E-value=8.7e-05 Score=62.54 Aligned_cols=89 Identities=27% Similarity=0.274 Sum_probs=78.1
Q ss_pred cccceeeeccccchhhcc-C-CCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEee
Q 042597 339 EGAKRVSLMDNRILRLLE-I-PTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDL 416 (693)
Q Consensus 339 ~~l~~l~l~~~~~~~~~~-~-~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l 416 (693)
..+..+++++|.+.++|. | ..++.+++|++.+|.+.++|.+ +..++.|+.|+++.| .+...|.-+..|.+|-+|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccC-ccccchHHHHHHHhHHHhcC
Confidence 356778899999998874 3 4567999999999999999998 899999999999999 78888989989999999999
Q ss_pred CCCCCCccChhhh
Q 042597 417 SSTNITGLPQDLK 429 (693)
Q Consensus 417 ~~~~i~~lp~~~~ 429 (693)
.+|.+..+|-.+-
T Consensus 131 ~~na~~eid~dl~ 143 (177)
T KOG4579|consen 131 PENARAEIDVDLF 143 (177)
T ss_pred CCCccccCcHHHh
Confidence 9999988887643
No 209
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.20 E-value=0.00082 Score=76.45 Aligned_cols=49 Identities=27% Similarity=0.335 Sum_probs=41.0
Q ss_pred CCcccchHHHHHHHHHHhhhc----CCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 9 DHTVVGQELLLYRVWRCITDQ----EKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 9 ~~~~vGr~~~~~~l~~~l~~~----~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+...+|.+...+.|.+++... .....++.++|++|+||||+|+.++...
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 355899999999999998752 2345689999999999999999999876
No 210
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0043 Score=66.30 Aligned_cols=193 Identities=16% Similarity=0.169 Sum_probs=98.0
Q ss_pred cchHHHHHHHHHHhhh-----------cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhh
Q 042597 13 VGQELLLYRVWRCITD-----------QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKW 81 (693)
Q Consensus 13 vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~ 81 (693)
=|.++...++.+.+.- +-...+=|.+|||||+|||++|+++++.. +..|=. |..-+++ ..+
T Consensus 437 GGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~---~~nFls---vkgpEL~--sk~ 508 (693)
T KOG0730|consen 437 GGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA---GMNFLS---VKGPELF--SKY 508 (693)
T ss_pred cCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh---cCCeee---ccCHHHH--HHh
Confidence 3466666666655432 11466788999999999999999999976 444421 1111111 011
Q ss_pred hhhchhHHHHHHHHHHccCcEEEEEeCcccccchh-------------hh----------hh-hhh--cccchhhhh-hc
Q 042597 82 KEKSLQDKAADISSILSRKKFVLLLDDIWERIDLK-------------EL----------VS-LFL--TTRSVDVCD-QM 134 (693)
Q Consensus 82 ~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~~~-------------~~----------~~-ili--Ttr~~~~~~-~~ 134 (693)
-..+.........+.-+-..+++++|+++...--. ++ .. +|+ |.|+..+-. ..
T Consensus 509 vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALl 588 (693)
T KOG0730|consen 509 VGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALL 588 (693)
T ss_pred cCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHc
Confidence 11122222222222223467999999987542111 11 12 222 333333211 12
Q ss_pred C---Cce-EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchH----HHHHHHH--HhcC--CChhHH
Q 042597 135 D---AEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLA----LKTVGRA--MKSQ--TKVGDW 202 (693)
Q Consensus 135 ~---~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pla----l~~~~~~--l~~~--~~~~~~ 202 (693)
. .+. +.++.-+.+.-.++|+.++....+..+.+ .++|+.++.|.--| +..=|.. +++. -+.-.|
T Consensus 589 RPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vd----l~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a~~i~~ 664 (693)
T KOG0730|consen 589 RPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVD----LEELAQATEGYSGAEIVAVCQEAALLALRESIEATEITW 664 (693)
T ss_pred CCcccceeEeecCccHHHHHHHHHHHHhcCCCCcccc----HHHHHHHhccCChHHHHHHHHHHHHHHHHHhcccccccH
Confidence 2 233 56665556666778888887666444433 45556655554422 2222222 2221 234466
Q ss_pred HHHHHHHhhhhcccC
Q 042597 203 QRAIKKMRISASKFT 217 (693)
Q Consensus 203 ~~~l~~l~~~~~~~~ 217 (693)
.++...+.......+
T Consensus 665 ~hf~~al~~~r~s~~ 679 (693)
T KOG0730|consen 665 QHFEEALKAVRPSLT 679 (693)
T ss_pred HHHHHHHHhhcccCC
Confidence 666666665554433
No 211
>PRK06526 transposase; Provisional
Probab=97.18 E-value=0.00026 Score=69.26 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+...+.++|++|+|||+||..+.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 34678999999999999999999876
No 212
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0026 Score=59.24 Aligned_cols=168 Identities=14% Similarity=0.231 Sum_probs=93.4
Q ss_pred ccch-HHHHHHHHHHhhhc-----------CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch
Q 042597 12 VVGQ-ELLLYRVWRCITDQ-----------EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK 79 (693)
Q Consensus 12 ~vGr-~~~~~~l~~~l~~~-----------~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 79 (693)
+||+ +..+.+|.+.+.-. -.+.+=|.++|++|.|||-||++|+++- .+-|+.+++ .
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht--------~c~firvsg----s 215 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT--------DCTFIRVSG----S 215 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc--------ceEEEEech----H
Confidence 5654 67777777665321 1345678899999999999999999975 233344421 2
Q ss_pred hhhhhchhHHHHHHHHHH----ccCcEEEEEeCcccccch--------------------hhh--------hhhhhcccc
Q 042597 80 KWKEKSLQDKAADISSIL----SRKKFVLLLDDIWERIDL--------------------KEL--------VSLFLTTRS 127 (693)
Q Consensus 80 ~~~~~~~~~~~~~l~~~l----~~~~~LlvlDdv~~~~~~--------------------~~~--------~~iliTtr~ 127 (693)
...+.-..+.....++.+ +..+-+|+.|+++....- .++ .++|++|..
T Consensus 216 elvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnr 295 (404)
T KOG0728|consen 216 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNR 295 (404)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccc
Confidence 233333333333333333 346778888988754110 011 567776665
Q ss_pred hhhhhh-----cCCce-EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHH
Q 042597 128 VDVCDQ-----MDAEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGR 191 (693)
Q Consensus 128 ~~~~~~-----~~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~ 191 (693)
-+++.. -+.+. ++.++-+.+.-.+++.-+..........+++.+++++....|.---++.+-|+
T Consensus 296 idild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteag 365 (404)
T KOG0728|consen 296 IDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAG 365 (404)
T ss_pred cccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhh
Confidence 544332 12222 78888777777778776655444344444455554444333323333444444
No 213
>PRK09183 transposase/IS protein; Provisional
Probab=97.15 E-value=0.0006 Score=67.11 Aligned_cols=75 Identities=16% Similarity=0.135 Sum_probs=40.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHccCcEEEEEeCccc
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILSRKKFVLLLDDIWE 111 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~ 111 (693)
....+.|+|++|+|||+||..+++.. . ... ..+.++...+...... ...........+++. -.+.-++|+||+..
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a-~-~~G-~~v~~~~~~~l~~~l~-~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~ 175 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEA-V-RAG-IKVRFTTAADLLLQLS-TAQRQGRYKTTLQRG-VMAPRLLIIDEIGY 175 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHH-H-HcC-CeEEEEeHHHHHHHHH-HHHHCCcHHHHHHHH-hcCCCEEEEccccc
Confidence 34678899999999999999998875 2 222 2344554422211000 000001111222222 23445999999974
No 214
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0009 Score=64.88 Aligned_cols=80 Identities=15% Similarity=0.170 Sum_probs=48.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhcccc--CCCCEEEE--EEEeccCCc-hhhhhhchhHHHHHHHHHHccCcE--EE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQ--HNFDVVIW--AAVIGFSDD-KKWKEKSLQDKAADISSILSRKKF--VL 104 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~--~~f~~~~w--v~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~--Ll 104 (693)
-.+++.++||||.|||+|++++++.. .++ +.|....- ++....+.. -.........+..++.+.++++.. ++
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkL-SIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfv 254 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKL-SIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFV 254 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhh-eeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEE
Confidence 35899999999999999999999988 333 33433333 333111110 001122344556667777776654 44
Q ss_pred EEeCcccc
Q 042597 105 LLDDIWER 112 (693)
Q Consensus 105 vlDdv~~~ 112 (693)
.+|+|+..
T Consensus 255 LIDEVESL 262 (423)
T KOG0744|consen 255 LIDEVESL 262 (423)
T ss_pred EeHHHHHH
Confidence 56998755
No 215
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.11 E-value=3.6e-05 Score=72.66 Aligned_cols=100 Identities=25% Similarity=0.242 Sum_probs=68.5
Q ss_pred CCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCCCCCccCh--hhhcCCCCcEe
Q 042597 360 CSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTNITGLPQ--DLKALEKLRYL 437 (693)
Q Consensus 360 ~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L 437 (693)
+.+.+.|+..+|.++.+.- ..+|+.|++|.|+-| .+..+. .+..+++|+.|.|+.|.|..+-. .+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHHH--HHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 4556667777777766543 467888888888888 565554 57788888888888888877643 36778888888
Q ss_pred ccCCcccccccccc----cccCCCcccccc
Q 042597 438 NLDHAYKLSIIPHK----LKSGFSKLEALR 463 (693)
Q Consensus 438 ~l~~~~~l~~~p~~----~~~~l~~L~~L~ 463 (693)
-|..|+....-+.. .+.-|++|+.|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88777555444321 234466666665
No 216
>PHA00729 NTP-binding motif containing protein
Probab=97.09 E-value=0.003 Score=59.68 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=27.4
Q ss_pred HHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 21 RVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 21 ~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+.+.+.. .+...++|+|.+|+||||+|..++++.
T Consensus 7 ~~~~~l~~--~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNN--NGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhc--CCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34444433 455689999999999999999999985
No 217
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.07 E-value=0.0016 Score=66.21 Aligned_cols=40 Identities=20% Similarity=0.306 Sum_probs=31.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEecc
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGF 75 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~ 75 (693)
...+.++|++|+|||.||.++++.. ...-..++++++.++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l---~~~g~~V~y~t~~~l 222 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKEL---LDRGKSVIYRTADEL 222 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHH---HHCCCeEEEEEHHHH
Confidence 3779999999999999999999987 223345677766443
No 218
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.07 E-value=0.0038 Score=71.58 Aligned_cols=163 Identities=14% Similarity=0.134 Sum_probs=89.0
Q ss_pred CcccchHHHHHHHHHHhhhc-----------CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCc
Q 042597 10 HTVVGQELLLYRVWRCITDQ-----------EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDD 78 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 78 (693)
+.+.|.+..++++.+.+... -...+-+.++|++|+|||++|+.+++.. ...| +.++..+...
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~---~~~~---i~i~~~~i~~- 250 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA---GAYF---ISINGPEIMS- 250 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh---CCeE---EEEecHHHhc-
Confidence 34789999999988876421 1234678899999999999999999876 2222 2233211111
Q ss_pred hhhhhhchhHHHHHHHHHHccCcEEEEEeCccccc--------c-----hhhh-----------hhhhh-cccchh-hhh
Q 042597 79 KKWKEKSLQDKAADISSILSRKKFVLLLDDIWERI--------D-----LKEL-----------VSLFL-TTRSVD-VCD 132 (693)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~--------~-----~~~~-----------~~ili-Ttr~~~-~~~ 132 (693)
. ............+.........+++|||++... . ...+ ..++| ||.... +-.
T Consensus 251 ~-~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~ 329 (733)
T TIGR01243 251 K-YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDP 329 (733)
T ss_pred c-cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCH
Confidence 0 000111122222333334567899999986431 0 1111 12333 443322 111
Q ss_pred hc----CCc-eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcch
Q 042597 133 QM----DAE-KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPL 184 (693)
Q Consensus 133 ~~----~~~-~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Pl 184 (693)
.. ... .+.+...+.++-.+++..+........ ......+++.+.|..-
T Consensus 330 al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~----d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE----DVDLDKLAEVTHGFVG 382 (733)
T ss_pred HHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc----ccCHHHHHHhCCCCCH
Confidence 11 112 277777788888888876543322111 2235778888888653
No 219
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.06 E-value=0.0064 Score=61.03 Aligned_cols=51 Identities=24% Similarity=0.310 Sum_probs=35.1
Q ss_pred CCCCcccchHHHHHH---HHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 7 PVDHTVVGQELLLYR---VWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 7 p~~~~~vGr~~~~~~---l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+....+||+.+..+. +.+.+....=..+.+.+.|++|.|||+||..+++.+
T Consensus 21 ~~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eL 74 (398)
T PF06068_consen 21 YIADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKEL 74 (398)
T ss_dssp SEETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHC
T ss_pred eccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHh
Confidence 345789998665543 555555532245899999999999999999999987
No 220
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0032 Score=66.33 Aligned_cols=119 Identities=22% Similarity=0.234 Sum_probs=65.3
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHccCcEEEEEeCcccc
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILSRKKFVLLLDDIWER 112 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~ 112 (693)
..=|.+|||+|+|||-||++|++.. .-.| +.+.+.---......+........++.-...+|+|++|+++..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa---g~NF-----isVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL 616 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA---GANF-----ISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDAL 616 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc---cCce-----EeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhc
Confidence 4567899999999999999999986 4333 3331100001111112222222233333468999999999755
Q ss_pred cc-------------hhhh------------hhhhhcccchhhhh--hcCCc---e-EEeccCCchHHHHHHHHHhhc
Q 042597 113 ID-------------LKEL------------VSLFLTTRSVDVCD--QMDAE---K-LEVYSLANDEAWKLFQEMVDR 159 (693)
Q Consensus 113 ~~-------------~~~~------------~~iliTtr~~~~~~--~~~~~---~-~~l~~l~~~e~~~l~~~~~~~ 159 (693)
.- +.++ .-||-.|..+++.. ..+++ . ..++.-+.+|-.+++......
T Consensus 617 ~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn 694 (802)
T KOG0733|consen 617 VPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKN 694 (802)
T ss_pred CcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhcc
Confidence 11 1111 22333333333321 12222 2 667777778888888887764
No 221
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.02 E-value=0.004 Score=63.33 Aligned_cols=51 Identities=16% Similarity=0.126 Sum_probs=34.3
Q ss_pred HHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEE-EEEEE
Q 042597 19 LYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVV-IWAAV 72 (693)
Q Consensus 19 ~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~-~wv~~ 72 (693)
..++++.+.-- .+-+.+.|+|++|+|||||++.+++... .++.+.. +|+-+
T Consensus 120 ~~RvID~l~Pi-GkGQR~LIvG~pGtGKTTLl~~la~~i~--~~~~dv~~vv~lI 171 (380)
T PRK12608 120 SMRVVDLVAPI-GKGQRGLIVAPPRAGKTVLLQQIAAAVA--ANHPEVHLMVLLI 171 (380)
T ss_pred hHhhhhheeec-CCCceEEEECCCCCCHHHHHHHHHHHHH--hcCCCceEEEEEe
Confidence 34466666532 2346779999999999999999999762 2234443 45444
No 222
>PRK06696 uridine kinase; Validated
Probab=97.02 E-value=0.0011 Score=63.97 Aligned_cols=44 Identities=16% Similarity=0.214 Sum_probs=38.0
Q ss_pred chHHHHHHHHHHhhh-cCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 14 GQELLLYRVWRCITD-QEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 14 Gr~~~~~~l~~~l~~-~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.|.+.+++|.+.+.+ ..++..+|+|.|.+|+||||+|++++..+
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 477888889998876 34567899999999999999999999987
No 223
>PRK04132 replication factor C small subunit; Provisional
Probab=97.01 E-value=0.007 Score=68.62 Aligned_cols=146 Identities=10% Similarity=0.081 Sum_probs=85.7
Q ss_pred EEc--CCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHH--Hcc-CcEEEEEeCcccc
Q 042597 38 LYG--TGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSI--LSR-KKFVLLLDDIWER 112 (693)
Q Consensus 38 i~G--~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~--l~~-~~~LlvlDdv~~~ 112 (693)
+.| |.++||||+|..+++.. -..+.-..++-+++..... .....+.+...... +.+ +.-++|+|+++..
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rg-----id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~L 642 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALAREL-FGENWRHNFLELNASDERG-----INVIREKVKEFARTKPIGGASFKIIFLDEADAL 642 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCccc-----HHHHHHHHHHHHhcCCcCCCCCEEEEEECcccC
Confidence 347 88999999999999986 1111112233444322211 11222222222211 112 3469999999977
Q ss_pred c--chhhh----------hhhh-hcccchhhhhhcCCce--EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHH
Q 042597 113 I--DLKEL----------VSLF-LTTRSVDVCDQMDAEK--LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLAR 177 (693)
Q Consensus 113 ~--~~~~~----------~~il-iTtr~~~~~~~~~~~~--~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~ 177 (693)
. +...+ .++| +|+....+.....+.. +++.+++.++..+.+.+.+...+...+ .+....|++
T Consensus 643 t~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~---~e~L~~Ia~ 719 (846)
T PRK04132 643 TQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT---EEGLQAILY 719 (846)
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHH
Confidence 4 33333 3444 4554445544444444 899999999999988877664432222 678899999
Q ss_pred HhCCcchHHHHHHHH
Q 042597 178 ECSGLPLALKTVGRA 192 (693)
Q Consensus 178 ~~~G~Plal~~~~~~ 192 (693)
.++|.+..+..+...
T Consensus 720 ~s~GDlR~AIn~Lq~ 734 (846)
T PRK04132 720 IAEGDMRRAINILQA 734 (846)
T ss_pred HcCCCHHHHHHHHHH
Confidence 999988555444433
No 224
>PRK06921 hypothetical protein; Provisional
Probab=97.01 E-value=0.0012 Score=65.15 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=29.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
....+.++|++|+|||.||.++++.. . +.+...++|+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l-~-~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANEL-M-RKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH-h-hhcCceEEEEEH
Confidence 45789999999999999999999987 2 121344567665
No 225
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.01 E-value=0.019 Score=57.99 Aligned_cols=152 Identities=10% Similarity=0.070 Sum_probs=90.4
Q ss_pred HHHHHHHHhhhcCCC-eeEEEEEcCCCCcHHHHHHHHHhhhccc------------------cCCCCEEEEEEEeccCCc
Q 042597 18 LLYRVWRCITDQEKN-RRIIGLYGTGGVGKTTILTQVNNNFCHQ------------------QHNFDVVIWAAVIGFSDD 78 (693)
Q Consensus 18 ~~~~l~~~l~~~~~~-~~vv~i~G~~GiGKTtla~~~~~~~~~~------------------~~~f~~~~wv~~~~~~~~ 78 (693)
..+++...+.. ++ .+...++|+.|+||+++|..++...-.. ..|.|.......
T Consensus 11 ~~~~l~~~~~~--~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~------ 82 (319)
T PRK06090 11 VWQNWKAGLDA--GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPE------ 82 (319)
T ss_pred HHHHHHHHHHc--CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecC------
Confidence 34455555544 33 4678899999999999999998876211 123332211110
Q ss_pred hhhhhhchhHHHHHHHHHH-----ccCcEEEEEeCcccccc--hhhh-----------hhhhhcccchhhhhhcCCce--
Q 042597 79 KKWKEKSLQDKAADISSIL-----SRKKFVLLLDDIWERID--LKEL-----------VSLFLTTRSVDVCDQMDAEK-- 138 (693)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~--~~~~-----------~~iliTtr~~~~~~~~~~~~-- 138 (693)
...+....++. ..+.+.+ .+.+=++|||+++.+.. ..++ .-|++|+....+.....++.
T Consensus 83 ~~~~~I~vdqi-R~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~ 161 (319)
T PRK06090 83 KEGKSITVEQI-RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQ 161 (319)
T ss_pred cCCCcCCHHHH-HHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccee
Confidence 00111122222 2333333 23445889999987732 2233 33556666666766665555
Q ss_pred EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHH
Q 042597 139 LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTV 189 (693)
Q Consensus 139 ~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~ 189 (693)
+.+.+++.+++.+.+.... . . ....+++.++|.|+.+..+
T Consensus 162 ~~~~~~~~~~~~~~L~~~~---~-------~-~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 162 WVVTPPSTAQAMQWLKGQG---I-------T-VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred EeCCCCCHHHHHHHHHHcC---C-------c-hHHHHHHHcCCCHHHHHHH
Confidence 8999999999999886531 1 1 2457789999999866544
No 226
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0053 Score=63.68 Aligned_cols=91 Identities=19% Similarity=0.260 Sum_probs=56.0
Q ss_pred CcccchHH---HHHHHHHHhhhc------CCC-eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch
Q 042597 10 HTVVGQEL---LLYRVWRCITDQ------EKN-RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK 79 (693)
Q Consensus 10 ~~~vGr~~---~~~~l~~~l~~~------~~~-~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 79 (693)
++.-|.|+ ++++|+++|.+. +++ .+=|.++|++|.|||-||++++-.. .-.| |. .. . .
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA---~VPF----F~-~s---G-S 371 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA---GVPF----FY-AS---G-S 371 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc---CCCe----Ee-cc---c-c
Confidence 34567654 566777777652 122 4568899999999999999998875 2222 11 11 1 2
Q ss_pred hhhhhchhHHHHHHHHHH----ccCcEEEEEeCcccc
Q 042597 80 KWKEKSLQDKAADISSIL----SRKKFVLLLDDIWER 112 (693)
Q Consensus 80 ~~~~~~~~~~~~~l~~~l----~~~~~LlvlDdv~~~ 112 (693)
+..+.-....+.++++.. +..+|+|+||+++..
T Consensus 372 EFdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 372 EFDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred chhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 233333333444444444 346899999998754
No 227
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.99 E-value=0.0059 Score=66.77 Aligned_cols=46 Identities=26% Similarity=0.348 Sum_probs=38.1
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+.++|.+..++.+...+.. .....|.|+|++|+|||++|+.+++..
T Consensus 65 ~~iiGqs~~i~~l~~al~~--~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCG--PNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred HHeeCcHHHHHHHHHHHhC--CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999887755 445677899999999999999998753
No 228
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.98 E-value=0.022 Score=58.76 Aligned_cols=43 Identities=23% Similarity=0.456 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHhhhcC-CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 15 QELLLYRVWRCITDQE-KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 15 r~~~~~~l~~~l~~~~-~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
|+.-.+.+.+.+...+ +...+|+|.|.=|+|||++.+.+...+
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456677888887643 677899999999999999999999988
No 229
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.95 E-value=0.00066 Score=58.47 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+|+|.|++|+||||+|+.++.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999986
No 230
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.95 E-value=0.0024 Score=73.47 Aligned_cols=48 Identities=23% Similarity=0.334 Sum_probs=39.4
Q ss_pred CcccchHHHHHHHHHHhhhc----CCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQ----EKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~----~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+|.+...+.+.+++... ..+..++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999877531 2244689999999999999999999987
No 231
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.014 Score=63.49 Aligned_cols=91 Identities=22% Similarity=0.229 Sum_probs=57.7
Q ss_pred CcccchHHHHHHHHHHhhh---------c-CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch
Q 042597 10 HTVVGQELLLYRVWRCITD---------Q-EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK 79 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~---------~-~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 79 (693)
+..=|-++...+|.+.+.- + -.+.+=|.+||++|.|||-+|++|+... ..-|+.+.+ .
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc--------sL~FlSVKG----P 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC--------SLNFLSVKG----P 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc--------eeeEEeecC----H
Confidence 5566778888888887742 1 1235668899999999999999999986 233444421 1
Q ss_pred hhhhh----chhHHHHHHHHHHccCcEEEEEeCcccc
Q 042597 80 KWKEK----SLQDKAADISSILSRKKFVLLLDDIWER 112 (693)
Q Consensus 80 ~~~~~----~~~~~~~~l~~~l~~~~~LlvlDdv~~~ 112 (693)
+...+ +.+...+-..+.-..++|+|++|+++..
T Consensus 740 ELLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ELLNMYVGQSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHHHHHhcchHHHHHHHHHHhhccCCeEEEecccccc
Confidence 12222 2222222233333458999999998754
No 232
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.94 E-value=0.0019 Score=62.19 Aligned_cols=102 Identities=12% Similarity=0.147 Sum_probs=69.9
Q ss_pred cccchHHHHHHHHHHhhh-----cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhc
Q 042597 11 TVVGQELLLYRVWRCITD-----QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKS 85 (693)
Q Consensus 11 ~~vGr~~~~~~l~~~l~~-----~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~ 85 (693)
.++|..-..+.++..+.+ ...+.-++.++|++|+||.-+++.+++...+..-+-+++......-.+......+.-
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Y 162 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDY 162 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHH
Confidence 467777777777777654 245678999999999999999999999874433333333322222223324555555
Q ss_pred hhHHHHHHHHHHcc-CcEEEEEeCcccc
Q 042597 86 LQDKAADISSILSR-KKFVLLLDDIWER 112 (693)
Q Consensus 86 ~~~~~~~l~~~l~~-~~~LlvlDdv~~~ 112 (693)
-+++.+.+++..+. +|-++|+|+++.+
T Consensus 163 k~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 163 KEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred HHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 66667777776654 8899999999876
No 233
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.94 E-value=0.02 Score=61.90 Aligned_cols=58 Identities=22% Similarity=0.386 Sum_probs=43.9
Q ss_pred CcccchHHHHHHHHHHhhhc---CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 10 HTVVGQELLLYRVWRCITDQ---EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~---~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
++++...+-++++..||... ....+++.++||+|+||||.++.+++.. .|+.+=|.+-
T Consensus 19 ~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el-----g~~v~Ew~np 79 (519)
T PF03215_consen 19 DELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL-----GFEVQEWINP 79 (519)
T ss_pred HHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh-----CCeeEEecCC
Confidence 44556677789999999862 2345799999999999999999999875 3555556533
No 234
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.93 E-value=0.0016 Score=65.36 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=44.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCc-hhhhhhchhHHHHHHHHHH--ccCcEEEEEe
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDD-KKWKEKSLQDKAADISSIL--SRKKFVLLLD 107 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~-~~~~~~~~~~~~~~l~~~l--~~~~~LlvlD 107 (693)
.....++|||++|+|||.+|+.++... ...| +-++..+.... ....+..+.+....-.+.. +++.++|+||
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el---g~~~---i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFID 219 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM---GIEP---IVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFIN 219 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc---CCCe---EEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEe
Confidence 456889999999999999999999987 3322 22333222110 0011112222222222221 5689999999
Q ss_pred Cccc
Q 042597 108 DIWE 111 (693)
Q Consensus 108 dv~~ 111 (693)
|++.
T Consensus 220 EIDA 223 (413)
T PLN00020 220 DLDA 223 (413)
T ss_pred hhhh
Confidence 9873
No 235
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0099 Score=63.94 Aligned_cols=144 Identities=14% Similarity=0.099 Sum_probs=81.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHccCcEEEEEeCccc
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILSRKKFVLLLDDIWE 111 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~ 111 (693)
....|.|.|+.|+|||+||+++++.. . ++..-.+.++++....... .+.....+-..+.+.+.-.+-+|||||++-
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~-~-k~~~~hv~~v~Cs~l~~~~--~e~iQk~l~~vfse~~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYY-S-KDLIAHVEIVSCSTLDGSS--LEKIQKFLNNVFSEALWYAPSIIVLDDLDC 505 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHh-c-cccceEEEEEechhccchh--HHHHHHHHHHHHHHHHhhCCcEEEEcchhh
Confidence 45788999999999999999999998 2 4444455566664443311 222222233334445566888999999974
Q ss_pred c--------cchhhh----------hhhhhcccchhh----------------hhhcCCc-eEEeccCCchHHHHHHHHH
Q 042597 112 R--------IDLKEL----------VSLFLTTRSVDV----------------CDQMDAE-KLEVYSLANDEAWKLFQEM 156 (693)
Q Consensus 112 ~--------~~~~~~----------~~iliTtr~~~~----------------~~~~~~~-~~~l~~l~~~e~~~l~~~~ 156 (693)
. .++... -.++.+++++.+ ....-.. ...++++...+-.++++..
T Consensus 506 l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~ 585 (952)
T KOG0735|consen 506 LASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTI 585 (952)
T ss_pred hhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHH
Confidence 3 122211 112223332221 1111111 1788888888888888776
Q ss_pred hhcccCCCCCChHHHHHHHHHHhCCc
Q 042597 157 VDRSTLGSHTSIPELAETLARECSGL 182 (693)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~I~~~~~G~ 182 (693)
+...... .. .+..+-+..+|+|.
T Consensus 586 ~s~~~~~--~~-~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 586 FSKNLSD--IT-MDDLDFLSVKTEGY 608 (952)
T ss_pred HHhhhhh--hh-hHHHHHHHHhcCCc
Confidence 6543311 11 23333477888774
No 236
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0055 Score=57.72 Aligned_cols=98 Identities=20% Similarity=0.235 Sum_probs=61.9
Q ss_pred ceecCCC--CcccchHHHHHHHHHHhhh-----------cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEE
Q 042597 3 AVELPVD--HTVVGQELLLYRVWRCITD-----------QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIW 69 (693)
Q Consensus 3 ~~~~p~~--~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~w 69 (693)
+++-|.. ...=|-.+.++++.+...- +-+..+=|.++|++|.|||-.|++|+++- .. .|
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt---da-----cf 239 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT---DA-----CF 239 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc---Cc-----eE
Confidence 3444443 3355678888888877542 11456678899999999999999999986 22 23
Q ss_pred EEEeccCCchhhhhhchhHHHHHHHHHH---cc-CcEEEEEeCcccc
Q 042597 70 AAVIGFSDDKKWKEKSLQDKAADISSIL---SR-KKFVLLLDDIWER 112 (693)
Q Consensus 70 v~~~~~~~~~~~~~~~~~~~~~~l~~~l---~~-~~~LlvlDdv~~~ 112 (693)
+.+. . ....+....+.+.++++.+ +. |-|++++|+++..
T Consensus 240 irvi---g-selvqkyvgegarmvrelf~martkkaciiffdeidai 282 (435)
T KOG0729|consen 240 IRVI---G-SELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAI 282 (435)
T ss_pred Eeeh---h-HHHHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccc
Confidence 3331 1 3334444444444444444 44 5689999988644
No 237
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0082 Score=66.18 Aligned_cols=162 Identities=16% Similarity=0.202 Sum_probs=94.0
Q ss_pred CcccchHHHHHHHHHHh---hh-------cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch
Q 042597 10 HTVVGQELLLYRVWRCI---TD-------QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK 79 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l---~~-------~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 79 (693)
..+.|.|+..++|.+.. .. +..-.+=|.++||+|+|||-||++++-.. . +=|+.+.. .
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA---g-----VPF~svSG----S 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---G-----VPFFSVSG----S 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc---C-----Cceeeech----H
Confidence 56788877776666654 32 11335667899999999999999999875 2 22233311 1
Q ss_pred hhhhhchhHHHHHHHHHH----ccCcEEEEEeCcccccchh-----------------hh-----------hhhh-hccc
Q 042597 80 KWKEKSLQDKAADISSIL----SRKKFVLLLDDIWERIDLK-----------------EL-----------VSLF-LTTR 126 (693)
Q Consensus 80 ~~~~~~~~~~~~~l~~~l----~~~~~LlvlDdv~~~~~~~-----------------~~-----------~~il-iTtr 126 (693)
+..+.-.....+.+++.. +..++++.+|+++...--. ++ ..|+ -+|.
T Consensus 379 EFvE~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tn 458 (774)
T KOG0731|consen 379 EFVEMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATN 458 (774)
T ss_pred HHHHHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccC
Confidence 222221112123333333 4577899999987552211 11 2333 4444
Q ss_pred chhhhhh--cCCce----EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHH
Q 042597 127 SVDVCDQ--MDAEK----LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLAL 186 (693)
Q Consensus 127 ~~~~~~~--~~~~~----~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal 186 (693)
..+++.. .++.. +.+..-+..+..++|.-++...... .+..++.+ |+..+-|.+-|.
T Consensus 459 r~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~--~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 459 RPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD--DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC--cchhhHHH-HHhcCCCCcHHH
Confidence 4444322 22222 7777778888888998887655422 23345555 999998888443
No 238
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.014 Score=54.93 Aligned_cols=173 Identities=14% Similarity=0.182 Sum_probs=93.7
Q ss_pred CcccchHHHHHHHHHHhhhc-----------CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCc
Q 042597 10 HTVVGQELLLYRVWRCITDQ-----------EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDD 78 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~-----------~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 78 (693)
...=|-+..++++++.+.-. -...+=|.+|||+|.|||-+|++++..- ...|- .+..
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT---~aTFL--------KLAg- 238 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT---NATFL--------KLAG- 238 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc---cchHH--------Hhcc-
Confidence 45668899999999887421 1234668899999999999999998764 33331 1111
Q ss_pred hhhhhhchhHHHHHHHHHH----ccCcEEEEEeCcccccc--------------------hhhh--------hhhhhccc
Q 042597 79 KKWKEKSLQDKAADISSIL----SRKKFVLLLDDIWERID--------------------LKEL--------VSLFLTTR 126 (693)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~l----~~~~~LlvlDdv~~~~~--------------------~~~~--------~~iliTtr 126 (693)
.+..+.-..+.++.+++.+ +..+.+|++|+++.... +.++ .+||..|.
T Consensus 239 PQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATN 318 (424)
T KOG0652|consen 239 PQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATN 318 (424)
T ss_pred hHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecc
Confidence 2333333334444444433 35688999998764311 0011 56776666
Q ss_pred chhhhhh-----cCCce-EEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHHHh
Q 042597 127 SVDVCDQ-----MDAEK-LEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRAMK 194 (693)
Q Consensus 127 ~~~~~~~-----~~~~~-~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~l~ 194 (693)
..+++.. -+.+. ++++--+++.-..+++-+........+.+++++++.-=..-|.---|+.+-|+.++
T Consensus 319 RvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiA 392 (424)
T KOG0652|consen 319 RVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIA 392 (424)
T ss_pred cccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHH
Confidence 5554322 22222 55544444444446666665554445555555544322222222244555555443
No 239
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.79 E-value=0.0009 Score=63.24 Aligned_cols=115 Identities=20% Similarity=0.124 Sum_probs=66.2
Q ss_pred cccceeEeccccccc-------cccccccCCccEEEEeccccccch------hhhhcCCccEEEEeccccchhhhccccc
Q 042597 526 TNLEEMKIDSTEEVK-------KRFRSGFRSLNTVRVNGCKVKDLT------WLVFVQNLKELEISFCHAVEDIIIVDKL 592 (693)
Q Consensus 526 ~~L~~L~i~~~~~~~-------~~~~~~~~~L~~L~l~~~~l~~~~------~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 592 (693)
.+|++++|..++.-+ ......+++|+.|+|.+|.++... .+...+.|+.|.+.+|-....-.. ...
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~-~v~ 263 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVK-SVL 263 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHH-HHH
Confidence 466666665544321 223356789999999999665533 233356789999988854322110 000
Q ss_pred ccccccccccCCcCCCcceeecccccccccc------c-cCCCCCCCccEEEEccCCCCCCcC
Q 042597 593 RDISEIIGLEHNFFAQLEYLRILYGRNLKSI------Y-PNPLPFPKLKKIQVLHCPELKKLP 648 (693)
Q Consensus 593 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l------~-~~~~~~~~L~~L~l~~c~~L~~lp 648 (693)
.. .....+|+|..|...|...-..+ + .....+|-|..|.+.+ +.++.+.
T Consensus 264 ~~------f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng-Nr~~E~~ 319 (388)
T COG5238 264 RR------FNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG-NRIKELA 319 (388)
T ss_pred HH------hhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc-CcchhHH
Confidence 01 24456899999998876432211 1 2234677777777754 3454443
No 240
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.78 E-value=0.0051 Score=56.98 Aligned_cols=38 Identities=29% Similarity=0.422 Sum_probs=30.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
...++++.|++|+||||+|+.++... ..++...++++.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l---~~~~~~~~~~~~ 43 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL---KLKYSNVIYLDG 43 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEec
Confidence 45799999999999999999999988 445556666644
No 241
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.75 E-value=0.007 Score=57.83 Aligned_cols=41 Identities=27% Similarity=0.373 Sum_probs=33.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEec
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIG 74 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~ 74 (693)
...+++.|+|++|+|||++|.+++... ......++|++..+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~---~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNA---ARQGKKVVYIDTEG 50 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH---HhCCCeEEEEECCC
Confidence 356899999999999999999999876 33456788998744
No 242
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.75 E-value=0.0059 Score=59.67 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=27.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWA 70 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv 70 (693)
+-+.++|.|.+|.||||||+.+++.. +.+|..+.++
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i---~~~~~~~~V~ 103 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI---AKAHGGYSVF 103 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH---HhcCCCEEEE
Confidence 45788999999999999999999987 4444433333
No 243
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.73 E-value=0.021 Score=61.56 Aligned_cols=185 Identities=13% Similarity=0.182 Sum_probs=104.2
Q ss_pred CCcccchHHHHHHHHHHhhh--cC-CCeeEEEEEcCCCCcHHHHHHHHHhhhcc--c---cCCCCEEEEEEEeccCCchh
Q 042597 9 DHTVVGQELLLYRVWRCITD--QE-KNRRIIGLYGTGGVGKTTILTQVNNNFCH--Q---QHNFDVVIWAAVIGFSDDKK 80 (693)
Q Consensus 9 ~~~~vGr~~~~~~l~~~l~~--~~-~~~~vv~i~G~~GiGKTtla~~~~~~~~~--~---~~~f~~~~wv~~~~~~~~~~ 80 (693)
+..+-+|+.+..+|..++.. .+ ...+.+.|.|.+|.|||+....|.+.+-. . -..|++ +.++...+.....
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l~~~~~ 473 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRLASPRE 473 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceeecCHHH
Confidence 35677999999999999875 22 34569999999999999999999997621 1 134443 2333322222111
Q ss_pred -----hhh-----hchhHHHHHHHHHH-----ccCcEEEEEeCcccccc-----hhhh--------hhhhhcccc-----
Q 042597 81 -----WKE-----KSLQDKAADISSIL-----SRKKFVLLLDDIWERID-----LKEL--------VSLFLTTRS----- 127 (693)
Q Consensus 81 -----~~~-----~~~~~~~~~l~~~l-----~~~~~LlvlDdv~~~~~-----~~~~--------~~iliTtr~----- 127 (693)
+.. .........+.... +.+.+++++|+++.... +..+ ++++|.+=.
T Consensus 474 ~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdl 553 (767)
T KOG1514|consen 474 IYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDL 553 (767)
T ss_pred HHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccC
Confidence 111 11122233333333 23568899999875522 1122 444332211
Q ss_pred ------hhhhhhcCCceEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHHHh
Q 042597 128 ------VDVCDQMDAEKLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKTVGRAMK 194 (693)
Q Consensus 128 ------~~~~~~~~~~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~l~ 194 (693)
..++.+.+...+.+.+.++++-.++...+.....-....-.+-++++|+.-.|..-.|+.+.-++.+
T Consensus 554 PEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA~E 626 (767)
T KOG1514|consen 554 PERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRAAE 626 (767)
T ss_pred HHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 1234445666688889999998888876654332111111233445555555555566665555443
No 244
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.72 E-value=0.036 Score=56.57 Aligned_cols=80 Identities=19% Similarity=0.125 Sum_probs=51.7
Q ss_pred cCcEEEEEeCcccccc--hhhh-----------hhhhhcccchhhhhhcCCce--EEeccCCchHHHHHHHHHhhcccCC
Q 042597 99 RKKFVLLLDDIWERID--LKEL-----------VSLFLTTRSVDVCDQMDAEK--LEVYSLANDEAWKLFQEMVDRSTLG 163 (693)
Q Consensus 99 ~~~~LlvlDdv~~~~~--~~~~-----------~~iliTtr~~~~~~~~~~~~--~~l~~l~~~e~~~l~~~~~~~~~~~ 163 (693)
+++=++|||+++.+.. ..++ .-|++|++...+.....++. +.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 4455888999987732 3333 34556666666665544443 9999999999999887641 1
Q ss_pred CCCChHHHHHHHHHHhCCcchHHHHH
Q 042597 164 SHTSIPELAETLARECSGLPLALKTV 189 (693)
Q Consensus 164 ~~~~~~~~~~~I~~~~~G~Plal~~~ 189 (693)
+ + .+.++..++|.|..+..+
T Consensus 206 -~----~-~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 -A----D-ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -C----h-HHHHHHHcCCCHHHHHHH
Confidence 1 1 234678899999655433
No 245
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.71 E-value=0.0098 Score=54.00 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=33.3
Q ss_pred chHHHHHHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 14 GQELLLYRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 14 Gr~~~~~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
|.++..+.+.+.+.. ++. +.+.++|+.|+||+++|..+++..
T Consensus 1 gq~~~~~~L~~~~~~--~~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS--GRLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp S-HHHHHHHHHHHHC--TC--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHc--CCcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 667777778777766 454 567999999999999999999977
No 246
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0058 Score=57.10 Aligned_cols=89 Identities=18% Similarity=0.275 Sum_probs=54.5
Q ss_pred ccchHHHHHHHHHHhhh-----------cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchh
Q 042597 12 VVGQELLLYRVWRCITD-----------QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKK 80 (693)
Q Consensus 12 ~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 80 (693)
.=|.+-..+++.+...- +-+..+=|.++|++|.|||.||++|+++- ... |+.+ .. ..
T Consensus 157 iggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t---~a~-----firv---vg-se 224 (408)
T KOG0727|consen 157 IGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT---TAA-----FIRV---VG-SE 224 (408)
T ss_pred cccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc---chh-----eeee---cc-HH
Confidence 44566666666666431 12566788999999999999999999975 322 2323 11 23
Q ss_pred hhhhchhHHHHHHHHHH----ccCcEEEEEeCcccc
Q 042597 81 WKEKSLQDKAADISSIL----SRKKFVLLLDDIWER 112 (693)
Q Consensus 81 ~~~~~~~~~~~~l~~~l----~~~~~LlvlDdv~~~ 112 (693)
..+..+.+.-.++++.. ++.+-+|++|+++..
T Consensus 225 fvqkylgegprmvrdvfrlakenapsiifideidai 260 (408)
T KOG0727|consen 225 FVQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAI 260 (408)
T ss_pred HHHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhH
Confidence 33333333333333333 456789999988644
No 247
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.01 Score=64.91 Aligned_cols=140 Identities=18% Similarity=0.152 Sum_probs=76.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHccCcEEEEEeCccc
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILSRKKFVLLLDDIWE 111 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~ 111 (693)
..+.+.++|++|.|||.+|+++++.. ..+|-.+..-.+ . ..+...+............+...+.|++|+++.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~~l---~--sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs 346 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKGSEL---L--SKWVGESEKNIRELFEKARKLAPSIIFIDEIDS 346 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeCHHH---h--ccccchHHHHHHHHHHHHHcCCCcEEEEEchhh
Confidence 45689999999999999999999965 333322211111 0 111112222223333333457889999999975
Q ss_pred ccchh---------hh---------------hh-hhhcccchhhhhh---c--CCce-EEeccCCchHHHHHHHHHhhcc
Q 042597 112 RIDLK---------EL---------------VS-LFLTTRSVDVCDQ---M--DAEK-LEVYSLANDEAWKLFQEMVDRS 160 (693)
Q Consensus 112 ~~~~~---------~~---------------~~-iliTtr~~~~~~~---~--~~~~-~~l~~l~~~e~~~l~~~~~~~~ 160 (693)
..... .+ .. +|-||-....... . .... +.++.-+.++..++|..+....
T Consensus 347 ~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~ 426 (494)
T COG0464 347 LASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDK 426 (494)
T ss_pred hhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhccc
Confidence 42111 11 22 3333333332221 1 2222 8888889999999999887644
Q ss_pred cCCCCCChHHHHHHHHHHhCC
Q 042597 161 TLGSHTSIPELAETLARECSG 181 (693)
Q Consensus 161 ~~~~~~~~~~~~~~I~~~~~G 181 (693)
... .......+.+++.+.|
T Consensus 427 ~~~--~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 427 KPP--LAEDVDLEELAEITEG 445 (494)
T ss_pred CCc--chhhhhHHHHHHHhcC
Confidence 311 0112334555555555
No 248
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.69 E-value=0.0012 Score=62.48 Aligned_cols=85 Identities=22% Similarity=0.315 Sum_probs=43.6
Q ss_pred ccccceeeeccccchhhccCCCCCccceeecccc--ccccccccccCCCCcccEEEccCCcchhhch--HhhhccccccE
Q 042597 338 WEGAKRVSLMDNRILRLLEIPTCSRLITLLLYEN--WIEEITDGFFQPMSSLRVLALGRNFFLSKLR--SGIANLVSLHH 413 (693)
Q Consensus 338 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~--~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p--~~~~~l~~L~~ 413 (693)
..++..+++.+..++.+.+++.+++|+.|.++.| .+..-..-....+++|++|++++| .+..+. ..+..+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcchhh
Confidence 3455666666666666666666666666666666 332211111334466666666666 322110 12334455555
Q ss_pred EeeCCCCCCc
Q 042597 414 LDLSSTNITG 423 (693)
Q Consensus 414 L~l~~~~i~~ 423 (693)
|++..|..+.
T Consensus 121 Ldl~n~~~~~ 130 (260)
T KOG2739|consen 121 LDLFNCSVTN 130 (260)
T ss_pred hhcccCCccc
Confidence 5555554444
No 249
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.65 E-value=0.0025 Score=67.94 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=41.8
Q ss_pred CcccchHHHHHHHHHHhhh----cCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITD----QEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~----~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..++|.++.+++|++.+.. ...+.+++.++||+|+||||||+.+++-.
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 4689999999999999932 23566899999999999999999999987
No 250
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.63 E-value=0.014 Score=54.56 Aligned_cols=86 Identities=20% Similarity=0.333 Sum_probs=54.9
Q ss_pred CcccchHHHHHHHHHHhhh--cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchh
Q 042597 10 HTVVGQELLLYRVWRCITD--QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQ 87 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~--~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~ 87 (693)
..++|.|...+.+.+=-.. .+.....|.+||-.|.|||+|.+++.+.+ .+..-- +.+... .++.
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~---~~~glr-----LVEV~k------~dl~ 125 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEY---ADEGLR-----LVEVDK------EDLA 125 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHH---HhcCCe-----EEEEcH------HHHh
Confidence 3489988888777664332 23456789999999999999999999987 332211 111111 1111
Q ss_pred HHHHHHHHHHc--cCcEEEEEeCcc
Q 042597 88 DKAADISSILS--RKKFVLLLDDIW 110 (693)
Q Consensus 88 ~~~~~l~~~l~--~~~~LlvlDdv~ 110 (693)
. ...+.+.|+ .+||.++.||..
T Consensus 126 ~-Lp~l~~~Lr~~~~kFIlFcDDLS 149 (287)
T COG2607 126 T-LPDLVELLRARPEKFILFCDDLS 149 (287)
T ss_pred h-HHHHHHHHhcCCceEEEEecCCC
Confidence 1 223444444 578999999985
No 251
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.63 E-value=0.0052 Score=61.91 Aligned_cols=56 Identities=18% Similarity=0.235 Sum_probs=37.6
Q ss_pred chHHHHHHHHHHhhhc--CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 14 GQELLLYRVWRCITDQ--EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 14 Gr~~~~~~l~~~l~~~--~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
+|........+++..- ....+-+.|+|+.|+|||.||.++++... +..+ .+.++.+
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~-~v~~~~~ 192 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGV-SSTLLHF 192 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCC-CEEEEEH
Confidence 4555555556666531 12346799999999999999999999982 2233 3455555
No 252
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.62 E-value=0.0011 Score=62.80 Aligned_cols=81 Identities=27% Similarity=0.321 Sum_probs=41.1
Q ss_pred CCccceeeccccccccccccccCCCCcccEEEccCC--cchhhchHhhhccccccEEeeCCCCCCccC--hhhhcCCCCc
Q 042597 360 CSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRN--FFLSKLRSGIANLVSLHHLDLSSTNITGLP--QDLKALEKLR 435 (693)
Q Consensus 360 ~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~--~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~ 435 (693)
+..|..|++.++.++.+.. |..|++|++|+++.| .....++-....+++|++|++++|+|..+. ..+..+.+|.
T Consensus 42 ~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 3444455555444443322 345666666666666 223333333444566666666666554321 1244555566
Q ss_pred EeccCCc
Q 042597 436 YLNLDHA 442 (693)
Q Consensus 436 ~L~l~~~ 442 (693)
.|++.+|
T Consensus 120 ~Ldl~n~ 126 (260)
T KOG2739|consen 120 SLDLFNC 126 (260)
T ss_pred hhhcccC
Confidence 6666655
No 253
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.57 E-value=0.003 Score=68.05 Aligned_cols=68 Identities=21% Similarity=0.334 Sum_probs=41.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHc--------cCcE
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILS--------RKKF 102 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~--------~~~~ 102 (693)
..-+++.++|++|+||||||.-++++. .|. ++=+++ ............+...++ +++.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa-----GYs-VvEINA--------SDeRt~~~v~~kI~~avq~~s~l~adsrP~ 389 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA-----GYS-VVEINA--------SDERTAPMVKEKIENAVQNHSVLDADSRPV 389 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc-----Cce-EEEecc--------cccccHHHHHHHHHHHHhhccccccCCCcc
Confidence 356899999999999999998887753 332 222222 122222333333333333 4556
Q ss_pred EEEEeCcccc
Q 042597 103 VLLLDDIWER 112 (693)
Q Consensus 103 LlvlDdv~~~ 112 (693)
-+|+|+++-.
T Consensus 390 CLViDEIDGa 399 (877)
T KOG1969|consen 390 CLVIDEIDGA 399 (877)
T ss_pred eEEEecccCC
Confidence 6999999855
No 254
>PRK07667 uridine kinase; Provisional
Probab=96.56 E-value=0.0036 Score=58.84 Aligned_cols=39 Identities=26% Similarity=0.461 Sum_probs=31.5
Q ss_pred HHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 19 LYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 19 ~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
++.+.+.+..-.+...+|+|.|++|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 455666665544556899999999999999999999987
No 255
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.52 E-value=0.0094 Score=66.89 Aligned_cols=160 Identities=16% Similarity=0.177 Sum_probs=81.8
Q ss_pred cccchHHHHHHHHHHhh---hc-------CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchh
Q 042597 11 TVVGQELLLYRVWRCIT---DQ-------EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKK 80 (693)
Q Consensus 11 ~~vGr~~~~~~l~~~l~---~~-------~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~ 80 (693)
.+.|.+...+++.+.+. .. ..-.+-+.++|++|+|||++|+.++... ...| +.+....... .
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~---~~~f---~~is~~~~~~--~ 224 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPF---FTISGSDFVE--M 224 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCE---EEEehHHhHH--h
Confidence 35666665555544432 10 0112348999999999999999998876 3222 1222211110 0
Q ss_pred hhhhchhHHHHHHHHHHccCcEEEEEeCcccccc----------------hhhh------------hhhhhcccchhhhh
Q 042597 81 WKEKSLQDKAADISSILSRKKFVLLLDDIWERID----------------LKEL------------VSLFLTTRSVDVCD 132 (693)
Q Consensus 81 ~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~~----------------~~~~------------~~iliTtr~~~~~~ 132 (693)
............+....+..+++++||+++.... +..+ ..+|.||...+...
T Consensus 225 ~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD 304 (644)
T PRK10733 225 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD 304 (644)
T ss_pred hhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcC
Confidence 0011111122222333345678999999976411 0111 12334555544322
Q ss_pred h--c---CCc-eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCc
Q 042597 133 Q--M---DAE-KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGL 182 (693)
Q Consensus 133 ~--~---~~~-~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~ 182 (693)
. . ..+ .+.++..+.++-.+++..+........+.+ ...+++.+.|.
T Consensus 305 ~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d----~~~la~~t~G~ 356 (644)
T PRK10733 305 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGF 356 (644)
T ss_pred HHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCC----HHHHHhhCCCC
Confidence 1 1 122 277777777788888887765543222222 34466666653
No 256
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.52 E-value=0.0047 Score=57.89 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=28.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
.+++.++|+.|+||||.+.+++.+. ..+ -..+..++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~-~~~--~~~v~lis~ 37 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL-KLK--GKKVALISA 37 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH-HHT--T--EEEEEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH-hhc--cccceeecC
Confidence 3689999999999999999999988 323 445566666
No 257
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.50 E-value=0.0098 Score=53.13 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+|-|++..|-||||.|...+.+.
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999999987
No 258
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.50 E-value=0.0093 Score=55.70 Aligned_cols=27 Identities=33% Similarity=0.607 Sum_probs=24.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+++-+|+|.|.+|+||||+|++++..+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~ 32 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQL 32 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999999988
No 259
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.47 E-value=0.0047 Score=62.12 Aligned_cols=39 Identities=26% Similarity=0.328 Sum_probs=31.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
...+++-|+|++|+||||||.+++... ...-..++|++.
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~---~~~g~~v~yId~ 91 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDA 91 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEEcc
Confidence 456899999999999999999998876 333456678877
No 260
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.45 E-value=0.00061 Score=74.67 Aligned_cols=110 Identities=22% Similarity=0.211 Sum_probs=52.7
Q ss_pred CCccceeecccc-cccccc-ccccCCCCcccEEEccCC-cchhhc----hHhhhccccccEEeeCCCC-CCc--cChhhh
Q 042597 360 CSRLITLLLYEN-WIEEIT-DGFFQPMSSLRVLALGRN-FFLSKL----RSGIANLVSLHHLDLSSTN-ITG--LPQDLK 429 (693)
Q Consensus 360 ~~~L~~L~l~~~-~l~~~~-~~~~~~l~~L~~L~L~~~-~~~~~~----p~~~~~l~~L~~L~l~~~~-i~~--lp~~~~ 429 (693)
++.|+.|.+.++ .+.... ......+++|+.|+++++ ...... ......+.+|+.|+++++. ++. +..-..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 555556555555 222211 122445666666666652 111111 1223345666677776664 444 211122
Q ss_pred cCCCCcEeccCCcccccccc-cccccCCCccccccccccCC
Q 042597 430 ALEKLRYLNLDHAYKLSIIP-HKLKSGFSKLEALRLLECGS 469 (693)
Q Consensus 430 ~l~~L~~L~l~~~~~l~~~p-~~~~~~l~~L~~L~l~~~~~ 469 (693)
.+++|++|.+.+|..++.-. ..+...+++|++|++++|..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 35667777666664322211 11124566677777766654
No 261
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.43 E-value=0.0071 Score=60.86 Aligned_cols=39 Identities=28% Similarity=0.337 Sum_probs=31.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
...+++-|+|++|+||||||.+++... ...-..++|++.
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~---~~~g~~~vyId~ 91 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEA---QKLGGTVAFIDA 91 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCCEEEECc
Confidence 456899999999999999999998876 333456778877
No 262
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.43 E-value=0.01 Score=57.93 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=31.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccC----CCCEEEEEEEec
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQH----NFDVVIWAAVIG 74 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~----~f~~~~wv~~~~ 74 (693)
....++.|+|++|+|||++|.+++... .... ....++|++..+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~-~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTV-QLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHe-eCccccCCCCccEEEEeCCC
Confidence 356899999999999999999998653 1111 136788987733
No 263
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.43 E-value=0.01 Score=52.79 Aligned_cols=37 Identities=24% Similarity=0.155 Sum_probs=29.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
..+|.|+|.+|+||||||+++..++ ...-..+.+++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L---~~~g~~~~~LDg 38 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRL---FARGIKVYLLDG 38 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHH---HHTTS-EEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEecC
Confidence 4689999999999999999999998 444556667766
No 264
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.43 E-value=0.0042 Score=65.36 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=39.9
Q ss_pred CCcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 9 DHTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 9 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...++||++.++.+...+.. ...|.|.|++|+|||++|+.++...
T Consensus 19 ~~~i~gre~vI~lll~aala----g~hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALS----GESVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hhhccCcHHHHHHHHHHHcc----CCCEEEECCCChhHHHHHHHHHHHh
Confidence 46799999999999888866 4678999999999999999999876
No 265
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.42 E-value=0.017 Score=55.98 Aligned_cols=40 Identities=30% Similarity=0.369 Sum_probs=32.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEe
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVI 73 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~ 73 (693)
....++.|+|++|+|||++|.+++... ...-..++|++.-
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~---~~~~~~v~yi~~e 60 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEA---AKNGKKVIYIDTE 60 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEECC
Confidence 346899999999999999999999876 2334678888774
No 266
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.42 E-value=0.053 Score=54.92 Aligned_cols=49 Identities=29% Similarity=0.298 Sum_probs=33.3
Q ss_pred eEEeccCCchHHHHHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHH
Q 042597 138 KLEVYSLANDEAWKLFQEMVDRSTLGSHTSIPELAETLARECSGLPLAL 186 (693)
Q Consensus 138 ~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal 186 (693)
.+++++++.+|+..++.-+....-......-+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 5799999999999999877655442221223445566666669999544
No 267
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.41 E-value=0.0083 Score=54.59 Aligned_cols=35 Identities=29% Similarity=0.464 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
++.|+|++|+||||+|..++... ..+-..++|+..
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~---~~~~~~v~~~~~ 35 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI---ATKGGKVVYVDI 35 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH---HhcCCEEEEEEC
Confidence 47899999999999999999987 323455667665
No 268
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.39 E-value=0.012 Score=68.10 Aligned_cols=48 Identities=27% Similarity=0.329 Sum_probs=39.7
Q ss_pred CcccchHHHHHHHHHHhhhc-------CCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQ-------EKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~-------~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..++|.++.++.+.+.+... +....++.++|++|+|||.+|+.++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999998531 1234578999999999999999998876
No 269
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.39 E-value=0.0079 Score=56.76 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=45.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE--eccCCch----h---hhhhchhHHHHHHHHHHccCcEEE
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV--IGFSDDK----K---WKEKSLQDKAADISSILSRKKFVL 104 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~--~~~~~~~----~---~~~~~~~~~~~~l~~~l~~~~~Ll 104 (693)
..+.|+|+.|+||||++..+.... .......++.-- .+..... . ............++..++...=.+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~---~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~i 78 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI---NKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVI 78 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---hhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEE
Confidence 478999999999999999988776 222222222211 1110000 0 000112334555677777667789
Q ss_pred EEeCcccccchh
Q 042597 105 LLDDIWERIDLK 116 (693)
Q Consensus 105 vlDdv~~~~~~~ 116 (693)
++|++-+.+...
T Consensus 79 i~gEird~e~~~ 90 (198)
T cd01131 79 LVGEMRDLETIR 90 (198)
T ss_pred EEcCCCCHHHHH
Confidence 999986654433
No 270
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.37 E-value=0.0071 Score=55.00 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+.+.++|.+|+||||+|++++..+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 467899999999999999999987
No 271
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.36 E-value=0.012 Score=58.08 Aligned_cols=99 Identities=19% Similarity=0.229 Sum_probs=53.9
Q ss_pred cchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE-eccCCch----hhhhhchh
Q 042597 13 VGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV-IGFSDDK----KWKEKSLQ 87 (693)
Q Consensus 13 vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~-~~~~~~~----~~~~~~~~ 87 (693)
.|......+.++.+.. ....++.|.|+.|+||||++..+.... ...-..++.+.- .+..... ........
T Consensus 62 lg~~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~l~all~~i---~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~ 136 (264)
T cd01129 62 LGLKPENLEIFRKLLE--KPHGIILVTGPTGSGKTTTLYSALSEL---NTPEKNIITVEDPVEYQIPGINQVQVNEKAGL 136 (264)
T ss_pred cCCCHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHHHHHHHhhh---CCCCCeEEEECCCceecCCCceEEEeCCcCCc
Confidence 3444333333333333 345689999999999999999887765 211112222211 1111000 00011112
Q ss_pred HHHHHHHHHHccCcEEEEEeCcccccchh
Q 042597 88 DKAADISSILSRKKFVLLLDDIWERIDLK 116 (693)
Q Consensus 88 ~~~~~l~~~l~~~~~LlvlDdv~~~~~~~ 116 (693)
.....++..++...=.++++++.+.+...
T Consensus 137 ~~~~~l~~~lR~~PD~i~vgEiR~~e~a~ 165 (264)
T cd01129 137 TFARGLRAILRQDPDIIMVGEIRDAETAE 165 (264)
T ss_pred CHHHHHHHHhccCCCEEEeccCCCHHHHH
Confidence 34556777777778888888887765433
No 272
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.36 E-value=0.015 Score=59.98 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=39.5
Q ss_pred cccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 11 TVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 11 ~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+|.+....++..+........+.+.++|++|+||||+|..+++..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l 48 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKEL 48 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHH
Confidence 46788888999999988643334459999999999999999999987
No 273
>PRK09354 recA recombinase A; Provisional
Probab=96.35 E-value=0.0084 Score=60.83 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=32.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
..-+++-|+|++|+||||||.+++... ...-..++|++.
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~---~~~G~~~~yId~ 96 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEA---QKAGGTAAFIDA 96 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECC
Confidence 456899999999999999999998876 344467788887
No 274
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.35 E-value=0.0084 Score=59.12 Aligned_cols=76 Identities=20% Similarity=0.216 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE--eccCCchhhhhhch----hHHHHHHHHHHccCcEEEEEe
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV--IGFSDDKKWKEKSL----QDKAADISSILSRKKFVLLLD 107 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~~~----~~~~~~l~~~l~~~~~LlvlD 107 (693)
+.|.|.|.||+||||+|+++...+ .. ...+ +.+++- .......-...... ..+...+.+.+ +++.++|+|
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~-~~-~~~~-v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~D 77 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL-EE-KGKE-VVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL-SKDTIVILD 77 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH-HH-TT---EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH-TT-SEEEE-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH-Hh-cCCE-EEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh-ccCeEEEEe
Confidence 468999999999999999999987 22 2222 344432 11001000011112 22233444444 455788999
Q ss_pred Cccccc
Q 042597 108 DIWERI 113 (693)
Q Consensus 108 dv~~~~ 113 (693)
|.....
T Consensus 78 d~nYiK 83 (270)
T PF08433_consen 78 DNNYIK 83 (270)
T ss_dssp S---SH
T ss_pred CCchHH
Confidence 986554
No 275
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.28 E-value=0.025 Score=54.44 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=30.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
....++.|+|++|+||||+|.+++... ...-..++|++.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~---~~~g~~v~yi~~ 55 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVET---AGQGKKVAYIDT 55 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH---HhcCCeEEEEEC
Confidence 346899999999999999999999876 233446677765
No 276
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.28 E-value=0.0063 Score=55.63 Aligned_cols=42 Identities=21% Similarity=0.266 Sum_probs=33.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhhcccc-CCCCEEEEEEEeccCC
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNFCHQQ-HNFDVVIWAAVIGFSD 77 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~~~~~-~~f~~~~wv~~~~~~~ 77 (693)
..++.+.|+.|+|||.+|+.++... . +.....+-+++..+..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l---~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELL---FVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHH---T-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHh---ccCCccchHHHhhhcccc
Confidence 5788999999999999999999988 4 5556666777755443
No 277
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.28 E-value=0.028 Score=57.20 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=22.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
-.+.+.++|+.|+||||+|..++...
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999876
No 278
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.27 E-value=0.009 Score=57.08 Aligned_cols=40 Identities=18% Similarity=0.372 Sum_probs=31.7
Q ss_pred HHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 18 LLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 18 ~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...++.+.+.....+..+|+|+|+||.|||||..++...+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 4456666666655678899999999999999999999998
No 279
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.25 E-value=0.017 Score=63.75 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=41.6
Q ss_pred CCcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 9 DHTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 9 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+||....+.++.+.+..-......|.|+|..|+|||++|+.+++..
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 3578999999999999887644555678899999999999999998865
No 280
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.23 E-value=0.0093 Score=62.63 Aligned_cols=48 Identities=23% Similarity=0.250 Sum_probs=36.6
Q ss_pred CcccchHHHHHHHHHHhhh-------c-C------CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITD-------Q-E------KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~-------~-~------~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.++||.+..++.+...+.. . . -..+.+.++|++|+|||++|+.++...
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999998887655521 0 0 123678999999999999999999876
No 281
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.23 E-value=0.014 Score=67.67 Aligned_cols=100 Identities=19% Similarity=0.283 Sum_probs=59.3
Q ss_pred CcccchHHHHHHHHHHhhhc-------CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhh-
Q 042597 10 HTVVGQELLLYRVWRCITDQ-------EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKW- 81 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~-------~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~- 81 (693)
..++|.++.++.+.+.+... ......+.++|+.|+|||++|+.+++.. -..-...+-+++.++......
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l---~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF---FGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh---cCCccceEEEEchhccccccHH
Confidence 56899999999999888631 1123567799999999999999999876 221223344444332110000
Q ss_pred h-----hh-chhHHHHHHHHHHccCc-EEEEEeCcccc
Q 042597 82 K-----EK-SLQDKAADISSILSRKK-FVLLLDDIWER 112 (693)
Q Consensus 82 ~-----~~-~~~~~~~~l~~~l~~~~-~LlvlDdv~~~ 112 (693)
. .. ........+.+.++.++ -++++|+++..
T Consensus 586 ~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 586 KLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred HhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC
Confidence 0 00 00001123445555555 48889999855
No 282
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.022 Score=54.89 Aligned_cols=101 Identities=22% Similarity=0.257 Sum_probs=60.7
Q ss_pred ceecCCC--CcccchHHHHHHHHHHhh----------hcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEE
Q 042597 3 AVELPVD--HTVVGQELLLYRVWRCIT----------DQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWA 70 (693)
Q Consensus 3 ~~~~p~~--~~~vGr~~~~~~l~~~l~----------~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv 70 (693)
+.+-|.. ..+-|-+...+.+.+... .....-+-+.++|++|.||+-||++|+... ... |+
T Consensus 124 v~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nST-----FF 195 (439)
T KOG0739|consen 124 VREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NST-----FF 195 (439)
T ss_pred hccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CCc-----eE
Confidence 3445543 567788888888877642 112335788999999999999999999976 222 22
Q ss_pred EEeccCCchhhhhhchhHHHHHHHHHH-ccCcEEEEEeCcccc
Q 042597 71 AVIGFSDDKKWKEKSLQDKAADISSIL-SRKKFVLLLDDIWER 112 (693)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~ 112 (693)
.+....-...+...+ +.+.+.+.+.- ++|+-+|++|+++..
T Consensus 196 SvSSSDLvSKWmGES-EkLVknLFemARe~kPSIIFiDEiDsl 237 (439)
T KOG0739|consen 196 SVSSSDLVSKWMGES-EKLVKNLFEMARENKPSIIFIDEIDSL 237 (439)
T ss_pred EeehHHHHHHHhccH-HHHHHHHHHHHHhcCCcEEEeehhhhh
Confidence 231111111122222 23333444333 468899999999743
No 283
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.21 E-value=0.0017 Score=71.12 Aligned_cols=174 Identities=28% Similarity=0.274 Sum_probs=101.9
Q ss_pred CCCCcccEEEccCCcchhh--chHhhhccccccEEeeCCC--CCCccC----hhhhcCCCCcEeccCCcccccccccccc
Q 042597 382 QPMSSLRVLALGRNFFLSK--LRSGIANLVSLHHLDLSST--NITGLP----QDLKALEKLRYLNLDHAYKLSIIPHKLK 453 (693)
Q Consensus 382 ~~l~~L~~L~L~~~~~~~~--~p~~~~~l~~L~~L~l~~~--~i~~lp----~~~~~l~~L~~L~l~~~~~l~~~p~~~~ 453 (693)
..++.|+.|.+.++..+.. +-.....+++|+.|+++++ .+...+ .....+.+|+.|+++.|..+.+.--..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 3478999999999876665 3346678999999999983 222222 2345578999999999864554432222
Q ss_pred -cCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCceeEEEeechhhHhhhhccchhhhhhcc-ccccee
Q 042597 454 -SGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELELEN-TNLEEM 531 (693)
Q Consensus 454 -~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~L~~L 531 (693)
..+++|++|.+..|.... ......-...++.|+.+++..+.......+... ..+ ++++.+
T Consensus 265 ~~~c~~L~~L~l~~c~~lt------------~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~------~~~c~~l~~l 326 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLT------------DEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL------LKNCPNLREL 326 (482)
T ss_pred HhhCCCcceEccCCCCccc------------hhHHHHHHHhcCcccEEeeecCccchHHHHHHH------HHhCcchhhh
Confidence 347899999987776321 122333344566688888876654311111111 111 344444
Q ss_pred EeccccccccccccccCCccEEEEecc-ccc--cc--hhhhhcCCccEEEEeccc
Q 042597 532 KIDSTEEVKKRFRSGFRSLNTVRVNGC-KVK--DL--TWLVFVQNLKELEISFCH 581 (693)
Q Consensus 532 ~i~~~~~~~~~~~~~~~~L~~L~l~~~-~l~--~~--~~l~~l~~L~~L~l~~~~ 581 (693)
.+... ..+..++.+.+.++ ... .. -....+++|+.+.+..|.
T Consensus 327 ~~~~~--------~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 327 KLLSL--------NGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred hhhhc--------CCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 43333 22555666666665 211 11 134457777777777766
No 284
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.19 E-value=0.022 Score=50.61 Aligned_cols=73 Identities=21% Similarity=0.312 Sum_probs=43.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEe---ccCCchhhhhhchhHHHHHHHHHHccCcEEEEEeC
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVI---GFSDDKKWKEKSLQDKAADISSILSRKKFVLLLDD 108 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDd 108 (693)
...+++|.|+.|.|||||++.++... ....+.+|++-. .+.. . -...+...-.+...+-.+.-++++|+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~----~~~~G~i~~~~~~~i~~~~--~--lS~G~~~rv~laral~~~p~illlDE 96 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGEL----EPDEGIVTWGSTVKIGYFE--Q--LSGGEKMRLALAKLLLENPNLLLLDE 96 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCC----CCCceEEEECCeEEEEEEc--c--CCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 45799999999999999999988764 223444444210 0000 0 11112222335555666777889998
Q ss_pred cccc
Q 042597 109 IWER 112 (693)
Q Consensus 109 v~~~ 112 (693)
-...
T Consensus 97 P~~~ 100 (144)
T cd03221 97 PTNH 100 (144)
T ss_pred CccC
Confidence 6543
No 285
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.18 E-value=0.015 Score=67.39 Aligned_cols=62 Identities=23% Similarity=0.273 Sum_probs=44.4
Q ss_pred CcccchHHHHHHHHHHhhhc-------CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEec
Q 042597 10 HTVVGQELLLYRVWRCITDQ-------EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIG 74 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~-------~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~ 74 (693)
..++|.+..++.+...+... +....++.++|++|+|||++|+.+++.. ...-...+.+++.+
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l---~~~~~~~i~id~se 636 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM---FDSDDAMVRIDMSE 636 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh---hcCCCcEEEEEhHH
Confidence 45889999999999988742 1123578899999999999999999876 22222345555533
No 286
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.17 E-value=0.016 Score=66.34 Aligned_cols=48 Identities=23% Similarity=0.303 Sum_probs=39.2
Q ss_pred CcccchHHHHHHHHHHhhhc------C-CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQ------E-KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~------~-~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..++|.++.++.+.+.+... . ....++.++|++|+|||.+|+.++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh
Confidence 46899999999999888742 1 124578999999999999999999876
No 287
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.15 E-value=0.021 Score=59.73 Aligned_cols=48 Identities=23% Similarity=0.241 Sum_probs=36.9
Q ss_pred CcccchHHHHHHHHHHhh-------h---cC--C----CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCIT-------D---QE--K----NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~-------~---~~--~----~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...||.++.++.+...+. . .. + ....+.++|++|+|||++|+.++...
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 457999999988876652 1 00 0 13579999999999999999999876
No 288
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.015 Score=64.77 Aligned_cols=100 Identities=19% Similarity=0.282 Sum_probs=64.4
Q ss_pred CcccchHHHHHHHHHHhhhc-------CCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchh--
Q 042597 10 HTVVGQELLLYRVWRCITDQ-------EKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKK-- 80 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~-------~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~-- 80 (693)
..+||.++.+..+.+.+... +....+....||.|+|||-||++++..+ -+.=+..+-++++++...-.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L---fg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL---FGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh---cCCCccceeechHHHHHHHHHH
Confidence 56899999999999998642 2345678889999999999999999987 32224455555533221000
Q ss_pred ----hhhh-chhHHHHHHHHHHccCcE-EEEEeCcccc
Q 042597 81 ----WKEK-SLQDKAADISSILSRKKF-VLLLDDIWER 112 (693)
Q Consensus 81 ----~~~~-~~~~~~~~l~~~l~~~~~-LlvlDdv~~~ 112 (693)
..+. ..-+-.-.+.+..+.++| +|.||+|+..
T Consensus 568 rLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 568 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred HHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc
Confidence 0000 000112345666777877 7778999855
No 289
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.12 E-value=0.0045 Score=58.34 Aligned_cols=23 Identities=39% Similarity=0.686 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+|+|.|++|+||||+|+++...+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L 23 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQIL 23 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 69999999999999999999988
No 290
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.11 E-value=0.0044 Score=53.91 Aligned_cols=22 Identities=41% Similarity=0.691 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 042597 36 IGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 36 v~i~G~~GiGKTtla~~~~~~~ 57 (693)
|+|.|++|+||||+|+++..+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999983
No 291
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.08 E-value=0.03 Score=55.11 Aligned_cols=49 Identities=12% Similarity=0.176 Sum_probs=39.7
Q ss_pred CCcccchHHHHHHHHHHhhhc--CCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 9 DHTVVGQELLLYRVWRCITDQ--EKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 9 ~~~~vGr~~~~~~l~~~l~~~--~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...++|..++..++..|+... .+...-|.|+||.|.|||++......+.
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~ 73 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI 73 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH
Confidence 356899999999999998752 2455678899999999999998887764
No 292
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.08 E-value=0.0046 Score=58.63 Aligned_cols=196 Identities=18% Similarity=0.135 Sum_probs=108.6
Q ss_pred cCCCCcccEEEccCCcchhhc----hHhhhccccccEEeeCCC---CCCc-cCh-------hhhcCCCCcEeccCCcccc
Q 042597 381 FQPMSSLRVLALGRNFFLSKL----RSGIANLVSLHHLDLSST---NITG-LPQ-------DLKALEKLRYLNLDHAYKL 445 (693)
Q Consensus 381 ~~~l~~L~~L~L~~~~~~~~~----p~~~~~l~~L~~L~l~~~---~i~~-lp~-------~~~~l~~L~~L~l~~~~~l 445 (693)
+..+..+..++||+|..-++- ...+.+-.+|+..+++.- .... +|. .+-++++|+..++++|-+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 345788889999999544433 334555677888887753 1221 443 3457788888888888666
Q ss_pred cccccc---cccCCCccccccccccCCCccccccCcccccCcchhHHhhccCCCCceeEEEeechhhHhhhhccchhhhh
Q 042597 446 SIIPHK---LKSGFSKLEALRLLECGSGGVIEEEGNVLCDDAEPLMKELLGLKHLNVLSWSFRSSLAVQKFFKYPKLELE 522 (693)
Q Consensus 446 ~~~p~~---~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~~l~~~~~~~~~~~~~~~~~~l~~~ 522 (693)
...|.. ++++-+.|.||.+.+|..... .++.+...+.++...+ ..
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~-------aG~rigkal~~la~nK-------------------------Ka 153 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPI-------AGGRIGKALFHLAYNK-------------------------KA 153 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCcc-------chhHHHHHHHHHHHHh-------------------------hh
Confidence 555542 346677788888887764321 1111111111111100 00
Q ss_pred hcccccceeEeccccccc------cccccccCCccEEEEecccccc--ch-----hhhhcCCccEEEEeccccchhhhcc
Q 042597 523 LENTNLEEMKIDSTEEVK------KRFRSGFRSLNTVRVNGCKVKD--LT-----WLVFVQNLKELEISFCHAVEDIIIV 589 (693)
Q Consensus 523 l~~~~L~~L~i~~~~~~~------~~~~~~~~~L~~L~l~~~~l~~--~~-----~l~~l~~L~~L~l~~~~~~~~~~~~ 589 (693)
-..+.|++..+..+...+ -..+.+..+|+.+.|..|++.. +. .+..+.+|+.|+|.+|.....-...
T Consensus 154 a~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~ 233 (388)
T COG5238 154 ADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY 233 (388)
T ss_pred ccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHH
Confidence 011455555443332211 1122445789999999995542 22 3455899999999998643211000
Q ss_pred cccccccccccccCCcCCCcceeecccc
Q 042597 590 DKLRDISEIIGLEHNFFAQLEYLRILYG 617 (693)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 617 (693)
+. ......+.|+.|.+.+|
T Consensus 234 --------La-~al~~W~~lrEL~lnDC 252 (388)
T COG5238 234 --------LA-DALCEWNLLRELRLNDC 252 (388)
T ss_pred --------HH-HHhcccchhhhccccch
Confidence 00 12334567888888887
No 293
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.053 Score=55.85 Aligned_cols=139 Identities=18% Similarity=0.270 Sum_probs=75.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHccCcEEEEEeCccccc--
Q 042597 36 IGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILSRKKFVLLLDDIWERI-- 113 (693)
Q Consensus 36 v~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~~-- 113 (693)
=.++||||.|||+++.++++.+ .|+ ++ ..++ .....+.-...|.....++.+++ |.|++-.-
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L-----~yd--Iy--dLeL------t~v~~n~dLr~LL~~t~~kSIiv-IEDIDcs~~l 301 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYL-----NYD--IY--DLEL------TEVKLDSDLRHLLLATPNKSILL-IEDIDCSFDL 301 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhc-----CCc--eE--Eeee------ccccCcHHHHHHHHhCCCCcEEE-Eeeccccccc
Confidence 3789999999999999999987 222 11 1111 11111111333333334555554 44444220
Q ss_pred ---------chh----hh------------------hh-hhhcccchhhhhh--cCCce----EEeccCCchHHHHHHHH
Q 042597 114 ---------DLK----EL------------------VS-LFLTTRSVDVCDQ--MDAEK----LEVYSLANDEAWKLFQE 155 (693)
Q Consensus 114 ---------~~~----~~------------------~~-iliTtr~~~~~~~--~~~~~----~~l~~l~~~e~~~l~~~ 155 (693)
... .+ -| ||+||-..+-+.. .+++. +.+.--+.+.-..|+..
T Consensus 302 ~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~n 381 (457)
T KOG0743|consen 302 RERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASN 381 (457)
T ss_pred ccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHH
Confidence 011 01 23 4566665443222 22222 88888899988889888
Q ss_pred HhhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHH-HHhcC
Q 042597 156 MVDRSTLGSHTSIPELAETLARECSGLPLALKTVGR-AMKSQ 196 (693)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~-~l~~~ 196 (693)
..+... -..++.+|.+...|.-..=..++. .+.++
T Consensus 382 YL~~~~------~h~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 382 YLGIEE------DHRLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred hcCCCC------CcchhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 776432 145666666666666554445554 44543
No 294
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.06 E-value=0.019 Score=66.82 Aligned_cols=48 Identities=25% Similarity=0.305 Sum_probs=39.8
Q ss_pred CcccchHHHHHHHHHHhhhcC-------CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQE-------KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~-------~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..++|.+..++.+...+.... ....++.++|++|+|||++|+.++...
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 458999999999999987521 124578899999999999999999876
No 295
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.05 E-value=0.0053 Score=46.54 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+++|.|.+|+||||+|+.+.+++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999885
No 296
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.04 E-value=0.03 Score=60.63 Aligned_cols=95 Identities=14% Similarity=0.099 Sum_probs=52.9
Q ss_pred CcccchHHHHHHHHHHh---hhcC-------CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch
Q 042597 10 HTVVGQELLLYRVWRCI---TDQE-------KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK 79 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l---~~~~-------~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~ 79 (693)
...-|.|+..+++.+.+ .... .=.+=|.++|++|.|||.||++++... .-.|-.+---+..+++.
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA---~VPFf~iSGS~FVemfV-- 224 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVEMFV-- 224 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc---CCCceeccchhhhhhhc--
Confidence 44678777666655554 3311 224567899999999999999999875 32221110000001100
Q ss_pred hhhhhchhHHHHHHHHHHccCcEEEEEeCcccc
Q 042597 80 KWKEKSLQDKAADISSILSRKKFVLLLDDIWER 112 (693)
Q Consensus 80 ~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~~ 112 (693)
..-.........+..++.++.+++|+++..
T Consensus 225 ---GvGAsRVRdLF~qAkk~aP~IIFIDEiDAv 254 (596)
T COG0465 225 ---GVGASRVRDLFEQAKKNAPCIIFIDEIDAV 254 (596)
T ss_pred ---CCCcHHHHHHHHHhhccCCCeEEEehhhhc
Confidence 001111122233444567899999988755
No 297
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.04 E-value=0.1 Score=59.53 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=40.7
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..++|+...+..+.+.+..-......|.|+|..|+|||++|+.+++..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 469999999999888877544556789999999999999999998865
No 298
>PTZ00301 uridine kinase; Provisional
Probab=96.04 E-value=0.0058 Score=57.88 Aligned_cols=25 Identities=28% Similarity=0.624 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+|+|.|++|+||||||+.+..+.
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHH
Confidence 4789999999999999999998776
No 299
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.03 E-value=0.013 Score=50.69 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 17 LLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 17 ~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
++.+++.+.+...=....++++.|.-|+||||+++.++...
T Consensus 6 ~~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 44555555555422345799999999999999999999986
No 300
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.02 E-value=0.042 Score=53.23 Aligned_cols=40 Identities=25% Similarity=0.283 Sum_probs=31.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCC------CEEEEEEEe
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNF------DVVIWAAVI 73 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f------~~~~wv~~~ 73 (693)
....++.|+|++|+|||++|..++... .... ..++|++..
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~---~~~~~~~g~~~~v~yi~~e 62 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEA---QLPGELGGLEGKVVYIDTE 62 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHh---hcccccCCCcceEEEEecC
Confidence 456899999999999999999998765 2222 567888763
No 301
>PRK06547 hypothetical protein; Provisional
Probab=96.02 E-value=0.01 Score=54.38 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=24.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....+|+|.|++|+||||+|+.++...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 667899999999999999999998875
No 302
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.01 E-value=0.0082 Score=54.72 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=35.7
Q ss_pred ccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 12 VVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 12 ~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+||.+..+.++.+.+..-......|.|+|..|+||+.+|+.+++.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 4788888888888887644444777899999999999999998865
No 303
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.00 E-value=0.13 Score=54.19 Aligned_cols=50 Identities=20% Similarity=0.457 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhh-----cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEE
Q 042597 16 ELLLYRVWRCITD-----QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWA 70 (693)
Q Consensus 16 ~~~~~~l~~~l~~-----~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv 70 (693)
..-+.++..||.. ..-+.+++.|+|++|+||||.++.++..+ .++.+=|.
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel-----g~~~~Ew~ 142 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL-----GYQLIEWS 142 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh-----Cceeeeec
Confidence 4556788889882 22356799999999999999999888765 44555665
No 304
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.99 E-value=0.015 Score=65.99 Aligned_cols=48 Identities=25% Similarity=0.289 Sum_probs=39.7
Q ss_pred CcccchHHHHHHHHHHhhhc-------CCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQ-------EKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~-------~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+||.++.++.+.+.+... ......+.++|++|+|||.+|+.++...
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999998741 1234578999999999999999998876
No 305
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.98 E-value=0.018 Score=57.00 Aligned_cols=58 Identities=22% Similarity=0.269 Sum_probs=42.8
Q ss_pred CCCCcccchHHHHHH---HHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCC
Q 042597 7 PVDHTVVGQELLLYR---VWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFD 65 (693)
Q Consensus 7 p~~~~~vGr~~~~~~---l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~ 65 (693)
+..+.+||..+.-+. +.+.+....-.-+.|.++|++|.|||+||..+++.+ -..-+|.
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL-G~dvPF~ 96 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL-GEDVPFV 96 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh-CCCCCce
Confidence 345789998765543 566665543456899999999999999999999988 3344553
No 306
>PRK08233 hypothetical protein; Provisional
Probab=95.95 E-value=0.0064 Score=56.64 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=23.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+|+|.|++|+||||+|+.++..+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4789999999999999999999876
No 307
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.93 E-value=0.032 Score=57.11 Aligned_cols=26 Identities=42% Similarity=0.627 Sum_probs=23.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+.++++++|++|+||||++.+++...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L 265 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF 265 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 45799999999999999999999877
No 308
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.92 E-value=0.0054 Score=51.30 Aligned_cols=22 Identities=32% Similarity=0.744 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 042597 36 IGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 36 v~i~G~~GiGKTtla~~~~~~~ 57 (693)
|.|+|++|+|||++|+.++...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5699999999999999999887
No 309
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.92 E-value=0.02 Score=56.06 Aligned_cols=76 Identities=21% Similarity=0.180 Sum_probs=45.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHccCcEEEEEeCccc
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILSRKKFVLLLDDIWE 111 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlDdv~~ 111 (693)
+..-+.++|++|+|||.||.++.++. . ..---+.++++.++.. ......+......++.+.++ +-=|+||||+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l-~--~~g~sv~f~~~~el~~-~Lk~~~~~~~~~~~l~~~l~-~~dlLIiDDlG~ 178 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNEL-L--KAGISVLFITAPDLLS-KLKAAFDEGRLEEKLLRELK-KVDLLIIDDIGY 178 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH-H--HcCCeEEEEEHHHHHH-HHHHHHhcCchHHHHHHHhh-cCCEEEEecccC
Confidence 56789999999999999999999998 2 3334456666644332 11111111222223333222 223889999865
Q ss_pred c
Q 042597 112 R 112 (693)
Q Consensus 112 ~ 112 (693)
.
T Consensus 179 ~ 179 (254)
T COG1484 179 E 179 (254)
T ss_pred c
Confidence 3
No 310
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.92 E-value=0.013 Score=56.77 Aligned_cols=28 Identities=29% Similarity=0.548 Sum_probs=25.2
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 30 EKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 30 ~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+..+++|.|++|+|||||++.+....
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l 57 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALL 57 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999999876
No 311
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.91 E-value=0.032 Score=55.33 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=35.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEec
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIG 74 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~ 74 (693)
...+++.|+|.+|+|||++|.++...- ......++|+...+
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~---~~~ge~vlyvs~~e 61 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEG---AREGEPVLYVSTEE 61 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHH---HhcCCcEEEEEecC
Confidence 567999999999999999999999987 55588899998833
No 312
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.90 E-value=0.0031 Score=35.43 Aligned_cols=18 Identities=44% Similarity=0.752 Sum_probs=9.2
Q ss_pred ccEEeeCCCCCCccChhh
Q 042597 411 LHHLDLSSTNITGLPQDL 428 (693)
Q Consensus 411 L~~L~l~~~~i~~lp~~~ 428 (693)
|++||+++|+++.+|+++
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555555443
No 313
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.84 E-value=0.0086 Score=57.22 Aligned_cols=27 Identities=37% Similarity=0.631 Sum_probs=24.6
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+..+|+|.|++|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999999876
No 314
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.83 E-value=0.02 Score=56.23 Aligned_cols=41 Identities=22% Similarity=0.240 Sum_probs=30.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhcccc----CCCCEEEEEEEe
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQ----HNFDVVIWAAVI 73 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~----~~f~~~~wv~~~ 73 (693)
...++=|+|++|+|||.||..++-.. ... +.-..++|++..
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~-~l~~~~~g~~~~vvyidTe 81 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNV-QLPEEIGGLGGKVVYIDTE 81 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT-TSGGCTTSSSSEEEEEESS
T ss_pred CCcEEEEEEecccccchHHHHHHHHh-hcccccccCCCceEEEeCC
Confidence 34799999999999999999887654 211 223568999883
No 315
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.83 E-value=0.066 Score=48.74 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=44.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch--hh-hh-------hc-hhHHHHHHHHHHccC
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK--KW-KE-------KS-LQDKAADISSILSRK 100 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~--~~-~~-------~~-~~~~~~~l~~~l~~~ 100 (693)
...+++|.|+.|.|||||++.++... ....+.++++-....... .. .. .+ .+...-.+...+-.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~----~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~ 100 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLY----KPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARN 100 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcC
Confidence 45799999999999999999998764 233455554332211100 00 00 11 122223355556667
Q ss_pred cEEEEEeCcccc
Q 042597 101 KFVLLLDDIWER 112 (693)
Q Consensus 101 ~~LlvlDdv~~~ 112 (693)
+-++++|+-...
T Consensus 101 p~illlDEP~~~ 112 (163)
T cd03216 101 ARLLILDEPTAA 112 (163)
T ss_pred CCEEEEECCCcC
Confidence 778889987544
No 316
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.82 E-value=0.032 Score=55.06 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=30.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
..+++.|+|++|+|||++|.+++... ...-..+++++.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~---a~~Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ---ASRGNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH---HhCCCcEEEEEe
Confidence 56899999999999999999998765 223456777766
No 317
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.81 E-value=0.0076 Score=53.56 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+|.+.|++|+||||+|+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
Confidence 68899999999999999998765
No 318
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.76 E-value=0.016 Score=56.24 Aligned_cols=39 Identities=23% Similarity=0.503 Sum_probs=33.2
Q ss_pred HHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 19 LYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 19 ~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+++..+.....+..+|+|+|.||+|||||..++-.++
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 356666666666788999999999999999999999988
No 319
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.75 E-value=0.01 Score=56.60 Aligned_cols=27 Identities=33% Similarity=0.556 Sum_probs=24.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
++..+|+|+|++|+||||||+.++...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999999876
No 320
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.75 E-value=0.053 Score=57.95 Aligned_cols=78 Identities=21% Similarity=0.212 Sum_probs=47.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCC--------------------chhhhhhchhHHHH
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSD--------------------DKKWKEKSLQDKAA 91 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~--------------------~~~~~~~~~~~~~~ 91 (693)
+-..++|+|++|+|||||++.+++.. ...+.++.+++.+...-. .............-
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i--~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAI--TTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHH--hhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 45788999999999999999999975 233455655554411111 01111111222233
Q ss_pred HHHHHH--ccCcEEEEEeCccc
Q 042597 92 DISSIL--SRKKFVLLLDDIWE 111 (693)
Q Consensus 92 ~l~~~l--~~~~~LlvlDdv~~ 111 (693)
.+.+.+ .++.+||++|++..
T Consensus 493 ~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCchH
Confidence 344444 67999999999743
No 321
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.71 E-value=0.023 Score=49.39 Aligned_cols=102 Identities=18% Similarity=0.338 Sum_probs=34.2
Q ss_pred CCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhch-HhhhccccccEEeeCCCCCCccChh-hhcCCCC
Q 042597 357 IPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLR-SGIANLVSLHHLDLSSTNITGLPQD-LKALEKL 434 (693)
Q Consensus 357 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L 434 (693)
|.++.+|+.+.+.. .+..+....|..+++|+.+.+..+ +..++ ..+.++.+|+.+.+.. .+..++.. +..+++|
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 33444444444442 344444444444444555554443 22222 1233444455555533 33333322 3334455
Q ss_pred cEeccCCcccccccccccccCCCcccccccc
Q 042597 435 RYLNLDHAYKLSIIPHKLKSGFSKLEALRLL 465 (693)
Q Consensus 435 ~~L~l~~~~~l~~~p~~~~~~l~~L~~L~l~ 465 (693)
+.+++..+ +..++...+.++ +|+.+.+.
T Consensus 84 ~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 55554332 333333334443 44444443
No 322
>PRK06762 hypothetical protein; Provisional
Probab=95.70 E-value=0.0097 Score=54.48 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.++.|.|++|+||||+|+.++.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 688999999999999999999875
No 323
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.68 E-value=0.0075 Score=53.22 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=35.1
Q ss_pred cchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 13 VGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 13 vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
||....++++.+.+..-......|.|+|.+|+||+++|+.++...
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 577788888888887643556778999999999999999888875
No 324
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.68 E-value=0.0087 Score=52.33 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+|.|.|++|+||||+|+.++++.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~ 24 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL 24 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh
Confidence 68999999999999999999987
No 325
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.021 Score=54.77 Aligned_cols=91 Identities=20% Similarity=0.231 Sum_probs=56.4
Q ss_pred CcccchHHHHHHHHHHhhh-----------cCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCc
Q 042597 10 HTVVGQELLLYRVWRCITD-----------QEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDD 78 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~-----------~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~ 78 (693)
...=|-+..+++|.+...- +-...+=|.+||.+|.|||-||++|+|.- ...|-- ...
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT---SATFlR--------vvG- 252 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT---SATFLR--------VVG- 252 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc---chhhhh--------hhh-
Confidence 3456788999999888642 11345678899999999999999999975 333311 111
Q ss_pred hhhhhhchhHHHHHHHHHH----ccCcEEEEEeCcccc
Q 042597 79 KKWKEKSLQDKAADISSIL----SRKKFVLLLDDIWER 112 (693)
Q Consensus 79 ~~~~~~~~~~~~~~l~~~l----~~~~~LlvlDdv~~~ 112 (693)
....+..+.+.....++.+ ....-++++|+++..
T Consensus 253 seLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAi 290 (440)
T KOG0726|consen 253 SELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAI 290 (440)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhh
Confidence 2233333333333333333 245678888988644
No 326
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.67 E-value=0.0077 Score=62.03 Aligned_cols=93 Identities=13% Similarity=0.207 Sum_probs=55.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhcccc----CCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHccCcEEEEEe
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQ----HNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILSRKKFVLLLD 107 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~----~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~LlvlD 107 (693)
..+=+.|||..|.|||.|...+|+.. .++ -||. -++ .+... .........+.+..+.+.+.++..|+.+|
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~l-p~~~k~R~HFh--~Fm--~~vh~-~l~~~~~~~~~l~~va~~l~~~~~lLcfD 134 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSL-PIKRKRRVHFH--EFM--LDVHS-RLHQLRGQDDPLPQVADELAKESRLLCFD 134 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhC-Ccccccccccc--HHH--HHHHH-HHHHHhCCCccHHHHHHHHHhcCCEEEEe
Confidence 45778999999999999999999987 332 1232 111 11111 00111112233445566667777899999
Q ss_pred Ccccccchhhh------------hhhhhcccchhh
Q 042597 108 DIWERIDLKEL------------VSLFLTTRSVDV 130 (693)
Q Consensus 108 dv~~~~~~~~~------------~~iliTtr~~~~ 130 (693)
++.-...-++. +.++|+|.+..-
T Consensus 135 EF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P 169 (362)
T PF03969_consen 135 EFQVTDIADAMILKRLFEALFKRGVVLVATSNRPP 169 (362)
T ss_pred eeeccchhHHHHHHHHHHHHHHCCCEEEecCCCCh
Confidence 87644322222 667788877543
No 327
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.67 E-value=0.034 Score=57.38 Aligned_cols=81 Identities=19% Similarity=0.195 Sum_probs=48.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE--eccCCch----h---hhhhchhHHHHHHHHHHccCcEE
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV--IGFSDDK----K---WKEKSLQDKAADISSILSRKKFV 103 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~--~~~~~~~----~---~~~~~~~~~~~~l~~~l~~~~~L 103 (693)
...+.|.|+.|+||||+++.+.... ..+....++.-- .+..... . ............++..++...=.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i---~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~ 198 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYI---NKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDV 198 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh---CcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCE
Confidence 4789999999999999999988865 323333333311 1110000 0 00111224555677778888888
Q ss_pred EEEeCcccccchh
Q 042597 104 LLLDDIWERIDLK 116 (693)
Q Consensus 104 lvlDdv~~~~~~~ 116 (693)
|++|++-+.....
T Consensus 199 i~vgEird~~~~~ 211 (343)
T TIGR01420 199 ILIGEMRDLETVE 211 (343)
T ss_pred EEEeCCCCHHHHH
Confidence 9999987655443
No 328
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.66 E-value=0.053 Score=49.88 Aligned_cols=78 Identities=21% Similarity=0.157 Sum_probs=43.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhc-hhHHHHHHHHHHccCcEEEEEeCc
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKS-LQDKAADISSILSRKKFVLLLDDI 109 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~LlvlDdv 109 (693)
+...+++|.|+.|+|||||++.++... ....+.++++-............+ .+...-.+...+-.++-++++|+-
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEP 98 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL----IPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEP 98 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC----CCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 345799999999999999999888754 122233332210000000000011 122233455566667788999986
Q ss_pred ccc
Q 042597 110 WER 112 (693)
Q Consensus 110 ~~~ 112 (693)
...
T Consensus 99 ts~ 101 (177)
T cd03222 99 SAY 101 (177)
T ss_pred ccc
Confidence 543
No 329
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.66 E-value=0.043 Score=53.46 Aligned_cols=40 Identities=25% Similarity=0.199 Sum_probs=31.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEe
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVI 73 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~ 73 (693)
...+++.|.|++|+|||++|.++.... ...-..++|+...
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~---~~~ge~~lyvs~e 58 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG---LQMGEPGIYVALE 58 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH---HHcCCcEEEEEee
Confidence 456899999999999999999987764 2335677888763
No 330
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.66 E-value=0.032 Score=56.06 Aligned_cols=78 Identities=14% Similarity=0.149 Sum_probs=47.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch-------------hhhhhchhHHHHHHHHHHc
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK-------------KWKEKSLQDKAADISSILS 98 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~-------------~~~~~~~~~~~~~l~~~l~ 98 (693)
..+++-|+|+.|+||||||..+.... +..-..++|++.-...+.. ...+...++........++
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~---q~~g~~~a~ID~e~~ld~~~a~~lGvdl~rllv~~P~~~E~al~~~e~lir 128 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEA---QKQGGICAFIDAEHALDPEYAESLGVDLDRLLVVQPDTGEQALWIAEQLIR 128 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHTT-EEEEEESSS---HHHHHHTT--GGGEEEEE-SSHHHHHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhh---hcccceeEEecCcccchhhHHHhcCccccceEEecCCcHHHHHHHHHHHhh
Confidence 45799999999999999999999876 4445678999982211110 0112233444444444444
Q ss_pred c-CcEEEEEeCcccc
Q 042597 99 R-KKFVLLLDDIWER 112 (693)
Q Consensus 99 ~-~~~LlvlDdv~~~ 112 (693)
. ..-++|+|.|...
T Consensus 129 sg~~~lVVvDSv~al 143 (322)
T PF00154_consen 129 SGAVDLVVVDSVAAL 143 (322)
T ss_dssp TTSESEEEEE-CTT-
T ss_pred cccccEEEEecCccc
Confidence 3 4458899998655
No 331
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.042 Score=55.76 Aligned_cols=77 Identities=22% Similarity=0.212 Sum_probs=47.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhh-----------hhhchhHHHHHHHHHHc-c
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKW-----------KEKSLQDKAADISSILS-R 99 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~-----------~~~~~~~~~~~l~~~l~-~ 99 (693)
.-+++.|-|.+|||||||..+++.++ ...- .++||.--+....... ...-.+.-...+...++ .
T Consensus 92 ~Gs~iLIgGdPGIGKSTLLLQva~~l---A~~~-~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~ 167 (456)
T COG1066 92 PGSVILIGGDPGIGKSTLLLQVAARL---AKRG-KVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQE 167 (456)
T ss_pred cccEEEEccCCCCCHHHHHHHHHHHH---HhcC-cEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhc
Confidence 45899999999999999999999998 3322 6788876222110000 00001112233444443 4
Q ss_pred CcEEEEEeCcccc
Q 042597 100 KKFVLLLDDIWER 112 (693)
Q Consensus 100 ~~~LlvlDdv~~~ 112 (693)
+.-++|+|.+...
T Consensus 168 ~p~lvVIDSIQT~ 180 (456)
T COG1066 168 KPDLVVIDSIQTL 180 (456)
T ss_pred CCCEEEEecccee
Confidence 6779999998654
No 332
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.61 E-value=0.01 Score=55.56 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=23.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+.++++|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999998765
No 333
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.60 E-value=0.035 Score=51.92 Aligned_cols=35 Identities=23% Similarity=0.115 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
++.|.|++|+|||++|.+++.... ..-..++|+..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~---~~g~~v~~~s~ 35 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL---ARGEPGLYVTL 35 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH---HCCCcEEEEEC
Confidence 368999999999999999988762 22345677766
No 334
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.57 E-value=0.052 Score=52.86 Aligned_cols=39 Identities=18% Similarity=0.105 Sum_probs=31.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
...+++.|+|++|+|||++|.+++... ...-..++|+..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~---~~~g~~~~y~~~ 61 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA---LKQGKKVYVITT 61 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH---HhCCCEEEEEEc
Confidence 456899999999999999999997664 223457788877
No 335
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.57 E-value=0.072 Score=55.36 Aligned_cols=26 Identities=35% Similarity=0.627 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+..++.++|+.|+||||.+.+++.++
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999877
No 336
>PRK05973 replicative DNA helicase; Provisional
Probab=95.53 E-value=0.049 Score=52.35 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=29.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
+..++.|.|.+|+|||++|.+++.... ..-..++++..
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a---~~Ge~vlyfSl 100 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM---KSGRTGVFFTL 100 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH---hcCCeEEEEEE
Confidence 457999999999999999999988762 22345666665
No 337
>PRK03839 putative kinase; Provisional
Probab=95.53 E-value=0.011 Score=54.90 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.|.|.|++|+||||+|+.++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999986
No 338
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.52 E-value=0.024 Score=56.96 Aligned_cols=48 Identities=23% Similarity=0.371 Sum_probs=42.5
Q ss_pred CcccchHHHHHHHHHHhhhc----CCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQ----EKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~----~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+.|+|.++.++++++.+.+. +.+.+++.+.||.|.||||||..+.+-+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999762 3467899999999999999999998877
No 339
>PRK10867 signal recognition particle protein; Provisional
Probab=95.52 E-value=0.06 Score=56.80 Aligned_cols=26 Identities=27% Similarity=0.394 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...++.++|++|+||||.|.+++..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l 124 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYL 124 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 36799999999999999999999877
No 340
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.50 E-value=0.021 Score=58.90 Aligned_cols=49 Identities=27% Similarity=0.336 Sum_probs=39.4
Q ss_pred CCcccchHHHHHHHHHHhhhc------------CCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 9 DHTVVGQELLLYRVWRCITDQ------------EKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 9 ~~~~vGr~~~~~~l~~~l~~~------------~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+.++||+++....+.-.+... ....+.+.++|++|+|||++|+.++...
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 467999999998887666531 1124789999999999999999999976
No 341
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.49 E-value=0.041 Score=57.04 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=30.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
...++.|.|.+|+|||||+.+++... ...-..++|+..
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~---a~~g~~VlYvs~ 118 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARL---AKRGGKVLYVSG 118 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHH---HhcCCeEEEEEC
Confidence 45799999999999999999999876 222346777765
No 342
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.073 Score=57.63 Aligned_cols=139 Identities=21% Similarity=0.185 Sum_probs=72.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHH-ccCcEEEEEeCcccc
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSIL-SRKKFVLLLDDIWER 112 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlvlDdv~~~ 112 (693)
.=|.++|++|+|||-||.+++... ..-++.+.+.---......+ ++....+.++- ..++|.+++|+++..
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~--------~~~fisvKGPElL~KyIGaS-Eq~vR~lF~rA~~a~PCiLFFDEfdSi 772 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNS--------NLRFISVKGPELLSKYIGAS-EQNVRDLFERAQSAKPCILFFDEFDSI 772 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhC--------CeeEEEecCHHHHHHHhccc-HHHHHHHHHHhhccCCeEEEecccccc
Confidence 457899999999999999998876 23345442210001111112 22223333333 459999999998754
Q ss_pred ---------cc----hhhh-----------hh-hh-hcccchhh----hhhcCCce-EEeccCCchHHHHHHHHHhhccc
Q 042597 113 ---------ID----LKEL-----------VS-LF-LTTRSVDV----CDQMDAEK-LEVYSLANDEAWKLFQEMVDRST 161 (693)
Q Consensus 113 ---------~~----~~~~-----------~~-il-iTtr~~~~----~~~~~~~~-~~l~~l~~~e~~~l~~~~~~~~~ 161 (693)
.. +.++ +. |+ .|||..-+ ++.-+.+. +.-+.-+..|-.++++.......
T Consensus 773 APkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~ 852 (952)
T KOG0735|consen 773 APKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLL 852 (952)
T ss_pred CcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccC
Confidence 11 1122 22 33 45554322 11112222 33334455566667766554332
Q ss_pred CCCCCChHHHHHHHHHHhCCcchH
Q 042597 162 LGSHTSIPELAETLARECSGLPLA 185 (693)
Q Consensus 162 ~~~~~~~~~~~~~I~~~~~G~Pla 185 (693)
... ....+.++.++.|..-|
T Consensus 853 ~~~----~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 853 KDT----DVDLECLAQKTDGFTGA 872 (952)
T ss_pred Ccc----ccchHHHhhhcCCCchh
Confidence 222 33457788888876643
No 343
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.48 E-value=0.036 Score=52.79 Aligned_cols=27 Identities=33% Similarity=0.557 Sum_probs=24.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
++...+.++||+|+||||+.++++.+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl 43 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL 43 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH
Confidence 356688899999999999999999987
No 344
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.47 E-value=0.024 Score=54.85 Aligned_cols=38 Identities=26% Similarity=0.311 Sum_probs=28.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCC-CCEEEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHN-FDVVIWAAV 72 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~-f~~~~wv~~ 72 (693)
..+++.|.|++|+|||+||.+++... ... -+.++|+..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~---~~~~ge~vlyvs~ 56 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNG---LKNFGEKVLYVSF 56 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH---HHHHT--EEEEES
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHh---hhhcCCcEEEEEe
Confidence 46899999999999999999988765 222 346677766
No 345
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.45 E-value=0.059 Score=55.11 Aligned_cols=43 Identities=26% Similarity=0.343 Sum_probs=32.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccC----CCCEEEEEEEec
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQH----NFDVVIWAAVIG 74 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~----~f~~~~wv~~~~ 74 (693)
....++-|+|++|+|||++|.+++... .... .-..++|++.-+
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~-~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNV-QLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHh-ccccccCCCCceEEEEeCCC
Confidence 346899999999999999999998764 1111 114788998744
No 346
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.44 E-value=0.0022 Score=60.92 Aligned_cols=98 Identities=26% Similarity=0.272 Sum_probs=60.6
Q ss_pred ccccceeeeccccchhhccCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchH--hhhccccccEEe
Q 042597 338 WEGAKRVSLMDNRILRLLEIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRS--GIANLVSLHHLD 415 (693)
Q Consensus 338 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~--~~~~l~~L~~L~ 415 (693)
+.+++.|..+++.+.++.-..+++.|++|.|+-|+|+.+.+ +..|++|+.|.|+.| .+..+-+ -+.++++|+.|=
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHh
Confidence 34566666777777666656667777777777777766655 566777777777777 4444332 345666777777
Q ss_pred eCCCCCCc-cChh-----hhcCCCCcEec
Q 042597 416 LSSTNITG-LPQD-----LKALEKLRYLN 438 (693)
Q Consensus 416 l~~~~i~~-lp~~-----~~~l~~L~~L~ 438 (693)
|..|.... -++. +.-|++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 76664333 2221 45566776665
No 347
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.44 E-value=0.036 Score=51.10 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
++.++|++|+||||++..++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999887
No 348
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.023 Score=56.92 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=34.1
Q ss_pred CcccchHHHHHHHHHHhhh----------cCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITD----------QEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~----------~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+.+.|.++..+-|.+...- -...=+-|.++||+|.|||-||++|+..-
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh
Confidence 3456666666666665421 11234678899999999999999999975
No 349
>PRK10536 hypothetical protein; Provisional
Probab=95.42 E-value=0.033 Score=53.74 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=41.2
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEE
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIW 69 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~w 69 (693)
..+.++......+..++.. ...|.+.|++|+|||+||.+++.+. -..+.|+.++.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~-l~~~~~~kIiI 109 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEA-LIHKDVDRIIV 109 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHH-HhcCCeeEEEE
Confidence 3467788888888888855 3599999999999999999999864 11344554433
No 350
>PRK04040 adenylate kinase; Provisional
Probab=95.42 E-value=0.014 Score=54.46 Aligned_cols=24 Identities=33% Similarity=0.628 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+|+|+|++|+||||+++.+....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 589999999999999999999987
No 351
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.41 E-value=0.043 Score=54.18 Aligned_cols=27 Identities=30% Similarity=0.505 Sum_probs=25.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+..++.|.|.+|+|||||+..+.+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999999986
No 352
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.40 E-value=0.012 Score=51.91 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 042597 36 IGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 36 v~i~G~~GiGKTtla~~~~~~~ 57 (693)
|.|+|++|+|||++|+.++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999986
No 353
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.075 Score=53.61 Aligned_cols=70 Identities=21% Similarity=0.259 Sum_probs=42.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHHc--cCcEEEEEeCc
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSILS--RKKFVLLLDDI 109 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlvlDdv 109 (693)
..+.|..|||+|.|||.+|++++.+- ..|+-+-- ..+...........++++.+.-+ .+-.|++||++
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~S-----GlDYA~mT-----GGDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDEA 452 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHS-----GLDYAIMT-----GGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEA 452 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhc-----CCceehhc-----CCCccccchHHHHHHHHHHHHHhhcccceEEEehhh
Confidence 35789999999999999999998863 22221111 00011112233455566665553 35578888988
Q ss_pred cc
Q 042597 110 WE 111 (693)
Q Consensus 110 ~~ 111 (693)
+.
T Consensus 453 DA 454 (630)
T KOG0742|consen 453 DA 454 (630)
T ss_pred HH
Confidence 63
No 354
>PRK04296 thymidine kinase; Provisional
Probab=95.38 E-value=0.056 Score=50.60 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.++.|+|+.|.||||+|..++.+.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
Confidence 578899999999999999999987
No 355
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.37 E-value=0.06 Score=54.49 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=31.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhcccc----CCCCEEEEEEEec
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQ----HNFDVVIWAAVIG 74 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~----~~f~~~~wv~~~~ 74 (693)
...+++-|+|++|+|||+||..++-.. ... ..-..++|++.-+
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~-~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTA-QLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHH-hcchhhcCCCCeEEEEEcCC
Confidence 356899999999999999999887543 111 1224688998744
No 356
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.34 E-value=0.012 Score=54.94 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+|.|.|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998876
No 357
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.34 E-value=0.03 Score=55.14 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.|.+.|.+|+||||+|++++...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l 23 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKL 23 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999887
No 358
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.33 E-value=0.048 Score=51.29 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=28.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhhccccCC-------CCEEEEEEE
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNFCHQQHN-------FDVVIWAAV 72 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~-------f~~~~wv~~ 72 (693)
..++.|+|++|+||||++..++......... -..++|++.
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~ 78 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISL 78 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEec
Confidence 3689999999999999999999988543322 236778766
No 359
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.32 E-value=0.025 Score=49.78 Aligned_cols=37 Identities=19% Similarity=0.442 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
++|.|+|+.|+|||||++.+.+.+ . +..+...+..+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~-~~g~~v~~ik~~ 37 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-K-RRGYRVAVIKHT 37 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-H-HTT--EEEEEE-
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-h-HcCCceEEEEEc
Confidence 479999999999999999999998 2 344555555555
No 360
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.31 E-value=0.045 Score=54.58 Aligned_cols=54 Identities=13% Similarity=0.198 Sum_probs=39.7
Q ss_pred ccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEE
Q 042597 12 VVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVV 67 (693)
Q Consensus 12 ~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~ 67 (693)
.-+|..+..--.++|.+ +....|.+.|.+|.|||.||.+..-...-.++.|.-+
T Consensus 226 i~prn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Ki 279 (436)
T COG1875 226 IRPRNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKI 279 (436)
T ss_pred cCcccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceE
Confidence 34566667777788887 7899999999999999999877665442334555443
No 361
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.30 E-value=0.044 Score=58.61 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=30.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
....++.|.|.+|+|||||+.+++.... ..-..++|++.
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a---~~g~kvlYvs~ 130 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLA---KNQMKVLYVSG 130 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHH---hcCCcEEEEEC
Confidence 3568999999999999999999988762 22235777765
No 362
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.28 E-value=0.054 Score=50.53 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=22.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...++|.|+.|+||||+++.++...
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5789999999999999999998765
No 363
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.27 E-value=0.11 Score=54.89 Aligned_cols=26 Identities=35% Similarity=0.470 Sum_probs=24.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+..++.++|++|+||||.|.+++..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L 119 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYF 119 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999999999887
No 364
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.27 E-value=0.057 Score=58.63 Aligned_cols=49 Identities=24% Similarity=0.155 Sum_probs=36.0
Q ss_pred HHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 21 RVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 21 ~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
.+-+.|..+=...+++.|.|++|+|||||+.+++... ..+-+.++++..
T Consensus 251 ~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~---~~~ge~~~y~s~ 299 (484)
T TIGR02655 251 RLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENA---CANKERAILFAY 299 (484)
T ss_pred hHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHH---HHCCCeEEEEEe
Confidence 3444444433467899999999999999999999976 333456777766
No 365
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.26 E-value=0.015 Score=51.68 Aligned_cols=20 Identities=45% Similarity=0.712 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 042597 35 IIGLYGTGGVGKTTILTQVN 54 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~ 54 (693)
.++|+|.||+||||+|..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 366
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.24 E-value=0.099 Score=47.33 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=24.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
++..++.|+|++|.|||||.+.+|...
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 456899999999999999999999875
No 367
>PRK05439 pantothenate kinase; Provisional
Probab=95.23 E-value=0.029 Score=56.21 Aligned_cols=27 Identities=33% Similarity=0.399 Sum_probs=24.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...-+|+|.|.+|+||||+|+.+....
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l 110 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALL 110 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998866
No 368
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.073 Score=48.10 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+.|.|+.|+|||||.+.++--.
T Consensus 28 Ge~~~i~G~NG~GKTtLLRilaGLl 52 (209)
T COG4133 28 GEALQITGPNGAGKTTLLRILAGLL 52 (209)
T ss_pred CCEEEEECCCCCcHHHHHHHHHccc
Confidence 4688999999999999999998755
No 369
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.22 E-value=0.29 Score=49.14 Aligned_cols=150 Identities=15% Similarity=0.052 Sum_probs=83.3
Q ss_pred HHHHHHhhhcCCCe-eEEEEEcCCCCcHHHHHHHHHhhhcc-------ccCCCCEEEEEEEeccCCchhhhhhchhHHHH
Q 042597 20 YRVWRCITDQEKNR-RIIGLYGTGGVGKTTILTQVNNNFCH-------QQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAA 91 (693)
Q Consensus 20 ~~l~~~l~~~~~~~-~vv~i~G~~GiGKTtla~~~~~~~~~-------~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~ 91 (693)
+.+...+.. ++. ++..++|..|.||+++|..+++..-. ...|.+...+++..+ .....++..
T Consensus 6 ~~l~~~i~~--~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g-------~~i~vd~Ir- 75 (299)
T PRK07132 6 KFLDNSATQ--NKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD-------KDLSKSEFL- 75 (299)
T ss_pred HHHHHHHHh--CCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC-------CcCCHHHHH-
Confidence 344444443 444 55569999999999999999987611 112232333332101 111222222
Q ss_pred HHHHHH-----c-cCcEEEEEeCcccccc--hhhh----------hh-hhhcccchhhhhhcCCce--EEeccCCchHHH
Q 042597 92 DISSIL-----S-RKKFVLLLDDIWERID--LKEL----------VS-LFLTTRSVDVCDQMDAEK--LEVYSLANDEAW 150 (693)
Q Consensus 92 ~l~~~l-----~-~~~~LlvlDdv~~~~~--~~~~----------~~-iliTtr~~~~~~~~~~~~--~~l~~l~~~e~~ 150 (693)
.+.+.+ . +.+=++|+|+++.... ..++ .. |++|+....+......+. +.+.+++.++..
T Consensus 76 ~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~ 155 (299)
T PRK07132 76 SAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKIL 155 (299)
T ss_pred HHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHH
Confidence 222222 2 4667888999886643 2223 33 445555555555444333 899999999998
Q ss_pred HHHHHHhhcccCCCCCChHHHHHHHHHHhCCcchHHHH
Q 042597 151 KLFQEMVDRSTLGSHTSIPELAETLARECSGLPLALKT 188 (693)
Q Consensus 151 ~l~~~~~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~ 188 (693)
+.+... + .. ++.+..++..++|.-.|+..
T Consensus 156 ~~l~~~-~-~~-------~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 156 AKLLSK-N-KE-------KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HHHHHc-C-CC-------hhHHHHHHHHcCCHHHHHHH
Confidence 877653 1 11 34566667667762234443
No 370
>PRK00625 shikimate kinase; Provisional
Probab=95.21 E-value=0.017 Score=52.87 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.|.|+|++|+||||+++.++.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999876
No 371
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.20 E-value=0.09 Score=55.73 Aligned_cols=39 Identities=26% Similarity=0.371 Sum_probs=28.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
.++++++|++|+||||++.+++... ........+..++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~-~~~~~g~~V~li~~ 259 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY-ALLYGKKKVALITL 259 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCCeEEEEEC
Confidence 4689999999999999999998876 21122344556655
No 372
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.20 E-value=0.017 Score=53.28 Aligned_cols=25 Identities=32% Similarity=0.309 Sum_probs=23.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...|.|+|++|+||||+|+.++.+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999986
No 373
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.19 E-value=0.014 Score=54.01 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 374
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.17 E-value=0.11 Score=50.77 Aligned_cols=41 Identities=15% Similarity=0.245 Sum_probs=30.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhcc-ccCCCCEEEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCH-QQHNFDVVIWAAV 72 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~-~~~~f~~~~wv~~ 72 (693)
+-+.++|.|..|+|||+|+..+.++..- .+++-+.++++-+
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~I 109 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAM 109 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEe
Confidence 4578899999999999999998887510 1233466677766
No 375
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.14 E-value=0.15 Score=46.13 Aligned_cols=77 Identities=19% Similarity=0.203 Sum_probs=45.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCc--hhhh--------hhchhHHHHHHHHHHccCc
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDD--KKWK--------EKSLQDKAADISSILSRKK 101 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~--~~~~--------~~~~~~~~~~l~~~l~~~~ 101 (693)
...+++|.|+.|.|||||++.++... ....+.++++....... .... -...+...-.+...+-...
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~----~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~ 99 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNP 99 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC----CCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCC
Confidence 34799999999999999999998865 22344444433211110 0000 0112222333555556667
Q ss_pred EEEEEeCcccc
Q 042597 102 FVLLLDDIWER 112 (693)
Q Consensus 102 ~LlvlDdv~~~ 112 (693)
=++++|+....
T Consensus 100 ~i~ilDEp~~~ 110 (157)
T cd00267 100 DLLLLDEPTSG 110 (157)
T ss_pred CEEEEeCCCcC
Confidence 78999987644
No 376
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.14 E-value=0.04 Score=56.98 Aligned_cols=49 Identities=27% Similarity=0.329 Sum_probs=39.9
Q ss_pred CCcccchHHHHHHHHHHhhhc--------C----CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 9 DHTVVGQELLLYRVWRCITDQ--------E----KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 9 ~~~~vGr~~~~~~l~~~l~~~--------~----~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+.+++|.++....+..++... . ...+.+.++|++|+|||++|+.++...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 467999999999998888531 0 124688999999999999999999976
No 377
>PRK14974 cell division protein FtsY; Provisional
Probab=95.13 E-value=0.12 Score=52.76 Aligned_cols=26 Identities=27% Similarity=0.463 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+..+++++|++|+||||.+.+++..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l 164 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYL 164 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999876
No 378
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.11 E-value=0.032 Score=51.56 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=23.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|.|++|+||||+|+.++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45699999999999999999999987
No 379
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.11 E-value=0.013 Score=49.73 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhccccCCCC
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNFCHQQHNFD 65 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~ 65 (693)
.|.|+|.+|+||||+|+.++... ...|.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~---~~~f~ 28 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL---GLSFK 28 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT---T--EE
T ss_pred CEeeECCCccHHHHHHHHHHHHc---CCcee
Confidence 37899999999999999999987 45553
No 380
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.10 E-value=0.12 Score=50.88 Aligned_cols=41 Identities=27% Similarity=0.276 Sum_probs=34.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEec
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIG 74 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~ 74 (693)
...+++=|+|+.|+||||+|.+++-.. +..-..++|++.-.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~a---q~~g~~a~fIDtE~ 98 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANA---QKPGGKAAFIDTEH 98 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHh---hcCCCeEEEEeCCC
Confidence 456899999999999999999998876 55555889998833
No 381
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.10 E-value=0.039 Score=51.61 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 15 QELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 15 r~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
+..+.....+.+.. ..+|.+.|++|.|||.||.+.+.+. -..++|+.++++.-
T Consensus 5 ~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~-v~~g~~~kiii~Rp 57 (205)
T PF02562_consen 5 KNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALEL-VKEGEYDKIIITRP 57 (205)
T ss_dssp -SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHH-HHTTS-SEEEEEE-
T ss_pred CCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHH-HHhCCCcEEEEEec
Confidence 45556667777764 6799999999999999999999877 34588888877644
No 382
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.10 E-value=0.061 Score=48.05 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
++.|.|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999986
No 383
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.09 E-value=0.015 Score=55.75 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+|+|.|++|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999876
No 384
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.07 E-value=0.016 Score=57.44 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=26.5
Q ss_pred HHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 20 YRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 20 ~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+++.+.. . .+-|.++|+.|+|||++++.+....
T Consensus 23 ~~ll~~l~~--~-~~pvLl~G~~GtGKT~li~~~l~~l 57 (272)
T PF12775_consen 23 SYLLDLLLS--N-GRPVLLVGPSGTGKTSLIQNFLSSL 57 (272)
T ss_dssp HHHHHHHHH--C-TEEEEEESSTTSSHHHHHHHHHHCS
T ss_pred HHHHHHHHH--c-CCcEEEECCCCCchhHHHHhhhccC
Confidence 345555554 2 4677999999999999999988765
No 385
>PF13245 AAA_19: Part of AAA domain
Probab=95.07 E-value=0.023 Score=43.86 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=19.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+++.|.|++|.|||+++.+.....
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5788899999999996655555554
No 386
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.06 E-value=0.04 Score=47.44 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+.+.|+|.||+||||+|.+++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 4678999999999999999999754
No 387
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.06 E-value=0.056 Score=54.05 Aligned_cols=26 Identities=42% Similarity=0.687 Sum_probs=23.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+..+++|+|++|+||||++.+++...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999999887
No 388
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.06 E-value=0.14 Score=62.14 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+=|.++|++|+|||.||+++|...
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 45678899999999999999999986
No 389
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.05 E-value=0.023 Score=52.58 Aligned_cols=23 Identities=35% Similarity=0.746 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999886
No 390
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.04 E-value=0.073 Score=54.35 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=31.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccc----cCCCCEEEEEEEec
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQ----QHNFDVVIWAAVIG 74 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~----~~~f~~~~wv~~~~ 74 (693)
...+++-|+|++|+|||+||..++-.. .. ...-..++|++.-+
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~-qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTT-QLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHH-hcchhhCCCCceEEEEEcCC
Confidence 355888999999999999999987543 11 11124678998844
No 391
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.03 E-value=0.02 Score=52.09 Aligned_cols=23 Identities=43% Similarity=0.583 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+.|+|.+|+||||++++++...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 37899999999999999999987
No 392
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.03 E-value=0.055 Score=56.67 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=23.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+..+|.++|++|+||||.|.+++..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999999999877
No 393
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.02 E-value=0.13 Score=48.75 Aligned_cols=35 Identities=43% Similarity=0.801 Sum_probs=27.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
-..++|.|.+|+|||+|+..+++.. .-+.++++.+
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~-----~~d~~V~~~i 49 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQ-----DADVVVYALI 49 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHC-----TTTEEEEEEE
T ss_pred CCEEEEEcCcccccchhhHHHHhcc-----cccceeeeec
Confidence 3789999999999999999999975 2344466655
No 394
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.02 E-value=0.065 Score=53.12 Aligned_cols=39 Identities=31% Similarity=0.446 Sum_probs=29.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
.+.+++.++|++|+||||.+.+++... . ..-..+.++++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l-~--~~g~~V~li~~ 108 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL-K--KQGKSVLLAAG 108 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH-H--hcCCEEEEEeC
Confidence 346899999999999999999999877 2 22234555554
No 395
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.01 E-value=0.044 Score=47.51 Aligned_cols=113 Identities=19% Similarity=0.365 Sum_probs=55.8
Q ss_pred cccceeeeccccchhhc--cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhch-HhhhccccccEEe
Q 042597 339 EGAKRVSLMDNRILRLL--EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLR-SGIANLVSLHHLD 415 (693)
Q Consensus 339 ~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p-~~~~~l~~L~~L~ 415 (693)
.+++.+.+.. .+..+. .|..+.+|+.+.+..+ +..+....|..++.|+.+.+.++ +..++ ..+..+.+|+.++
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECEEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccccccc
Confidence 4566666653 444443 3777778888888764 77777777888878888888653 33333 3456688888888
Q ss_pred eCCCCCCccChh-hhcCCCCcEeccCCcccccccccccccCCCcc
Q 042597 416 LSSTNITGLPQD-LKALEKLRYLNLDHAYKLSIIPHKLKSGFSKL 459 (693)
Q Consensus 416 l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~~l~~L 459 (693)
+..+ +..++.. +.+. +|+.+.+.. .+..++...+.++++|
T Consensus 88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 88 IPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL 128 (129)
T ss_dssp ETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred cCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence 8764 5555443 5555 777777664 3555665556666555
No 396
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.00 E-value=0.06 Score=56.16 Aligned_cols=38 Identities=16% Similarity=0.288 Sum_probs=29.7
Q ss_pred HHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 18 LLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 18 ~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+.+++.+.. .....+.|.|+||.|||++.+++.+..
T Consensus 9 ~~~~v~~~~~~--~~~~~~fv~G~~GtGKs~l~~~i~~~~ 46 (364)
T PF05970_consen 9 VFDTVIEAIEN--EEGLNFFVTGPAGTGKSFLIKAIIDYL 46 (364)
T ss_pred HHHHHHHHHHc--cCCcEEEEEcCCCCChhHHHHHHHHHh
Confidence 34445555554 456788999999999999999999887
No 397
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=95.00 E-value=0.088 Score=55.78 Aligned_cols=39 Identities=28% Similarity=0.509 Sum_probs=30.7
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
+-+.++|.|.+|+|||||+.++++.. . +.+-+.++++-+
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~-~-~~~~dv~V~~li 180 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNI-S-KQHSGSSVFAGV 180 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-H-hhCCCEEEEEcC
Confidence 45789999999999999999999886 2 235577777655
No 398
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.99 E-value=0.017 Score=54.66 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+|+|.|++|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 399
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=94.98 E-value=0.039 Score=60.73 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=40.3
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+..+.|.+..+.|.++......+..+|.|+|++|+||||+|+.++.+.
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L 416 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKL 416 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHh
Confidence 456778887888888877665666799999999999999999999987
No 400
>PHA02244 ATPase-like protein
Probab=94.96 E-value=0.028 Score=57.08 Aligned_cols=49 Identities=20% Similarity=0.168 Sum_probs=32.9
Q ss_pred CCcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 9 DHTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 9 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+..++|...........+..--....-|.|+|++|+|||++|+++++..
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHh
Confidence 4567886655544333333211223457889999999999999999875
No 401
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.95 E-value=0.033 Score=55.36 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=23.2
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+..-+|+|.|+.|+||||+|+.+....
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999998776655
No 402
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.95 E-value=0.022 Score=52.92 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+++|.|++|+||||+++.++...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999998876
No 403
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.95 E-value=0.022 Score=52.60 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+++.+.|++|+||||+|+.+....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998875
No 404
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.94 E-value=0.018 Score=51.60 Aligned_cols=23 Identities=30% Similarity=0.523 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
++.|+|++|+||||+|+.+..+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 37899999999999999998875
No 405
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.93 E-value=0.023 Score=52.38 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=23.6
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+|+|-||=|+||||||+.++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 5789999999999999999999998
No 406
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.92 E-value=0.094 Score=59.47 Aligned_cols=100 Identities=17% Similarity=0.267 Sum_probs=70.2
Q ss_pred CcccchHHHHHHHHHHhhhc----CC--CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQ----EK--NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKE 83 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~----~~--~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 83 (693)
...+|.++.+..|.+.+... .+ ....+.+.|+.|+|||-||++++..+ .+..+..+-+++.++........
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~---Fgse~~~IriDmse~~evsklig 638 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV---FGSEENFIRLDMSEFQEVSKLIG 638 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH---cCCccceEEechhhhhhhhhccC
Confidence 45789999999999998752 12 45678899999999999999999987 66666666666654222111111
Q ss_pred ----hchhHHHHHHHHHHccCcE-EEEEeCcccc
Q 042597 84 ----KSLQDKAADISSILSRKKF-VLLLDDIWER 112 (693)
Q Consensus 84 ----~~~~~~~~~l~~~l~~~~~-LlvlDdv~~~ 112 (693)
-...+....+.+.++.++| +|.||||+..
T Consensus 639 sp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 639 SPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred CCcccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 1234445578888888887 5556999865
No 407
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.92 E-value=0.084 Score=47.83 Aligned_cols=26 Identities=31% Similarity=0.216 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+|-|++..|-||||.|..++.+.
T Consensus 4 ~~Gli~v~~g~GkGKtt~a~g~a~ra 29 (173)
T TIGR00708 4 ERGIIIVHTGNGKGKTTAAFGMALRA 29 (173)
T ss_pred cccEEEEECCCCCChHHHHHHHHHHH
Confidence 34688899999999999999999987
No 408
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=94.91 E-value=0.073 Score=54.05 Aligned_cols=38 Identities=24% Similarity=0.408 Sum_probs=29.8
Q ss_pred HHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 20 YRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 20 ~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+.+.+.....+..+|+|.|++|+|||||+..+...+
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34555544333567899999999999999999998887
No 409
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.90 E-value=0.13 Score=48.36 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
++++|+|+.|.||||+++.+.-..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 899999999999999999987543
No 410
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.058 Score=52.50 Aligned_cols=69 Identities=22% Similarity=0.275 Sum_probs=42.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHH----ccCcEEEEEe
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSIL----SRKKFVLLLD 107 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~~LlvlD 107 (693)
....++|||++|.|||-+|+.|+... .-.|- .+.. .........+....|++.. ...+|.+++|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~m---g~nfl---~v~s------s~lv~kyiGEsaRlIRemf~yA~~~~pciifmd 232 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATM---GVNFL---KVVS------SALVDKYIGESARLIRDMFRYAREVIPCIIFMD 232 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhc---CCceE---EeeH------hhhhhhhcccHHHHHHHHHHHHhhhCceEEeeh
Confidence 45788999999999999999999987 33331 1111 1222222333333333333 3367999999
Q ss_pred Ccccc
Q 042597 108 DIWER 112 (693)
Q Consensus 108 dv~~~ 112 (693)
|++..
T Consensus 233 eiDAi 237 (388)
T KOG0651|consen 233 EIDAI 237 (388)
T ss_pred hhhhh
Confidence 98744
No 411
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.87 E-value=0.024 Score=52.17 Aligned_cols=23 Identities=26% Similarity=0.492 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.|.|.|++|+||||+|+.++.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999985
No 412
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.85 E-value=0.021 Score=50.97 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+|.|.|++|+||||+|++++...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999999875
No 413
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.85 E-value=0.083 Score=55.71 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+..++.++|++|+||||.|.+++...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l 123 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYL 123 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 35799999999999999999999886
No 414
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.84 E-value=0.079 Score=55.51 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++++|+.|+||||++.+++.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998764
No 415
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.84 E-value=0.035 Score=51.74 Aligned_cols=37 Identities=32% Similarity=0.512 Sum_probs=30.0
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
.++++|+|+.|+|||||+.++.... .++|..+++.+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~---~~~~~~~v~~TT 38 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEF---PDKFGRVVSHTT 38 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHS---TTTEEEEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc---ccccccceeecc
Confidence 4789999999999999999999986 667755555544
No 416
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.83 E-value=0.24 Score=44.82 Aligned_cols=84 Identities=17% Similarity=0.269 Sum_probs=53.9
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE----eccCC----chhhhhhchhHHHHHHHHHHccCcEEE
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV----IGFSD----DKKWKEKSLQDKAADISSILSRKKFVL 104 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~----~~~~~----~~~~~~~~~~~~~~~l~~~l~~~~~Ll 104 (693)
.-.+++.|.-++|||+|+..++++. ....|+..+=++. ....+ -..+...-.+.....+-...++-.+-|
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~--fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav 99 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDK--FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV 99 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhh--hcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence 3578889999999999999999873 5666665554444 11111 122333444555566667778888877
Q ss_pred EEeCcccccchhhh
Q 042597 105 LLDDIWERIDLKEL 118 (693)
Q Consensus 105 vlDdv~~~~~~~~~ 118 (693)
|+=|+-+...++..
T Consensus 100 iVyDit~~~Sfe~t 113 (221)
T KOG0094|consen 100 IVYDITDRNSFENT 113 (221)
T ss_pred EEEeccccchHHHH
Confidence 77666665554444
No 417
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=94.82 E-value=0.092 Score=56.69 Aligned_cols=98 Identities=17% Similarity=0.170 Sum_probs=55.6
Q ss_pred cchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE-eccCCchh----hhhhchh
Q 042597 13 VGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV-IGFSDDKK----WKEKSLQ 87 (693)
Q Consensus 13 vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~-~~~~~~~~----~~~~~~~ 87 (693)
.|...+..+....+.. ....++.|+|+.|+||||+...+.+... ..-..++-+-- .+..-... .......
T Consensus 224 Lg~~~~~~~~l~~~~~--~~~GlilitGptGSGKTTtL~a~L~~l~---~~~~~iiTiEDpvE~~~~~~~q~~v~~~~g~ 298 (486)
T TIGR02533 224 LGMSPELLSRFERLIR--RPHGIILVTGPTGSGKTTTLYAALSRLN---TPERNILTVEDPVEYQIEGIGQIQVNPKIGL 298 (486)
T ss_pred cCCCHHHHHHHHHHHh--cCCCEEEEEcCCCCCHHHHHHHHHhccC---CCCCcEEEEcCCeeeecCCCceEEEccccCc
Confidence 4444433333333333 3456999999999999999998877651 11111222110 11110000 0011123
Q ss_pred HHHHHHHHHHccCcEEEEEeCcccccch
Q 042597 88 DKAADISSILSRKKFVLLLDDIWERIDL 115 (693)
Q Consensus 88 ~~~~~l~~~l~~~~~LlvlDdv~~~~~~ 115 (693)
.....++..|+...=.+++.++-+.+..
T Consensus 299 ~f~~~lr~~LR~dPDvI~vGEiRd~eta 326 (486)
T TIGR02533 299 TFAAGLRAILRQDPDIIMVGEIRDLETA 326 (486)
T ss_pred cHHHHHHHHHhcCCCEEEEeCCCCHHHH
Confidence 4567788888889989999998777543
No 418
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.82 E-value=0.15 Score=45.53 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=24.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+..++.++|.+|+||||+|.+++..+
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L 47 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKL 47 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999988
No 419
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.81 E-value=0.041 Score=56.01 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=36.9
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..++|.++.++.+.-.+.. .+...+.+.|++|.||||+|+.+..-.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~--~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAID--PGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHhCCHHHHHHHHHHHHhc--cCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 5789999998877755433 234569999999999999999998765
No 420
>PRK06217 hypothetical protein; Validated
Probab=94.80 E-value=0.025 Score=52.70 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.|+|.|.+|+||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999886
No 421
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.75 E-value=0.13 Score=53.76 Aligned_cols=26 Identities=27% Similarity=0.558 Sum_probs=22.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+...++|.|+.|+|||||++.++...
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~ 186 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT 186 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC
Confidence 45789999999999999999888653
No 422
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.73 E-value=0.054 Score=50.43 Aligned_cols=44 Identities=23% Similarity=0.247 Sum_probs=31.6
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..++|.+.....+.-.... .+-+.++|++|+|||++|+.+..-+
T Consensus 3 ~dI~GQe~aKrAL~iAAaG----~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG----GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC----C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhcCcHHHHHHHHHHHcC----CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 4678888777665544432 4789999999999999999998755
No 423
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.73 E-value=0.045 Score=51.66 Aligned_cols=27 Identities=19% Similarity=0.389 Sum_probs=24.4
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+..+++|+|++|+||||+|+.+....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999999876
No 424
>PRK15453 phosphoribulokinase; Provisional
Probab=94.70 E-value=0.046 Score=53.44 Aligned_cols=27 Identities=30% Similarity=0.519 Sum_probs=24.3
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+..+|+|.|.+|+||||+|+.+...+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999998766
No 425
>PRK08149 ATP synthase SpaL; Validated
Probab=94.69 E-value=0.14 Score=53.71 Aligned_cols=26 Identities=19% Similarity=0.503 Sum_probs=22.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+...++|.|..|+|||||+..++...
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~ 175 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHS 175 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCC
Confidence 45788999999999999999888753
No 426
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.69 E-value=0.036 Score=50.36 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=24.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|+|+.|+|||||+.++....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 46799999999999999999999887
No 427
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.67 E-value=0.11 Score=52.81 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=30.8
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccc---cC-CCCEEEEEEEec
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQ---QH-NFDVVIWAAVIG 74 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~---~~-~f~~~~wv~~~~ 74 (693)
....++.|+|++|+|||+||..++... .. .. .-..++|++..+
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~-~~~~~~Gg~~~~vvyIdtE~ 140 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTC-QLPIDQGGGEGKALYIDTEG 140 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHH-hhhhhcCCCCceEEEEECCC
Confidence 456899999999999999999988643 11 11 123568887744
No 428
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.67 E-value=0.027 Score=49.47 Aligned_cols=23 Identities=43% Similarity=0.761 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.++|+|+.|+|||||++.++...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999999875
No 429
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.67 E-value=0.052 Score=54.50 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=35.1
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+.++=..+....+..++.. .+.|.|.|++|+||||+|+.++...
T Consensus 45 ~~y~f~~~~~~~vl~~l~~----~~~ilL~G~pGtGKTtla~~lA~~l 88 (327)
T TIGR01650 45 PAYLFDKATTKAICAGFAY----DRRVMVQGYHGTGKSTHIEQIAARL 88 (327)
T ss_pred CCccCCHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHH
Confidence 4466666666777777754 3569999999999999999999987
No 430
>PRK14530 adenylate kinase; Provisional
Probab=94.66 E-value=0.027 Score=54.01 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+.|+|.|++|+||||+|+.++.++
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 431
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.63 E-value=0.21 Score=45.91 Aligned_cols=26 Identities=35% Similarity=0.590 Sum_probs=23.0
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|.|+.|.|||||++.++...
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 45799999999999999999998864
No 432
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.62 E-value=0.041 Score=56.40 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=40.8
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+.++|+...+.++.+.+..-.....-|.|+|..|+||+++|+.++..-
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s 53 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC
Confidence 468999999999999988654556788999999999999999988653
No 433
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.62 E-value=0.15 Score=53.83 Aligned_cols=39 Identities=33% Similarity=0.579 Sum_probs=28.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
+-+.++|.|.+|+|||||+.+++... .. ++-+.++++-+
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~-~~-~~~~v~V~~li 181 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNI-AK-EHGGYSVFAGV 181 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-Hh-cCCCEEEEEEe
Confidence 45788999999999999999988875 21 22245555544
No 434
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.59 E-value=0.032 Score=53.02 Aligned_cols=26 Identities=23% Similarity=0.521 Sum_probs=22.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNN 56 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~ 56 (693)
...+.++|+|++|+|||||++.+...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 46688999999999999999998754
No 435
>PTZ00035 Rad51 protein; Provisional
Probab=94.59 E-value=0.15 Score=52.20 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=30.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccc----cCCCCEEEEEEEec
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQ----QHNFDVVIWAAVIG 74 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~----~~~f~~~~wv~~~~ 74 (693)
....++.|+|++|+|||+|+..++-.. +. ...-..++|++..+
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~-qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTC-QLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHh-ccccccCCCCceEEEEEccC
Confidence 356899999999999999999987654 21 11223567887743
No 436
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.58 E-value=0.12 Score=55.36 Aligned_cols=38 Identities=24% Similarity=0.362 Sum_probs=30.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
...++.|.|.+|+|||||+.+++.... .+-..++|++.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a---~~g~~vlYvs~ 116 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA---AAGGKVLYVSG 116 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH---hcCCeEEEEEc
Confidence 457999999999999999999999872 22345778776
No 437
>PRK13947 shikimate kinase; Provisional
Probab=94.57 E-value=0.029 Score=51.64 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.|+|.|++|+||||+|+.+++..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999986
No 438
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.57 E-value=0.12 Score=49.04 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNN 55 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~ 55 (693)
..+++|+|+.|.||||+.+.++.
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHH
Confidence 37999999999999999999983
No 439
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.57 E-value=0.027 Score=52.28 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
++++|+|+.|+||||+|+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998864
No 440
>PRK13949 shikimate kinase; Provisional
Probab=94.54 E-value=0.031 Score=51.10 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.|+|+|++|+||||+++.++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999986
No 441
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.53 E-value=0.045 Score=51.24 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.|+|+|-||+||||+|..++.++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l 24 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRL 24 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHH
Confidence 58999999999999999867766
No 442
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.53 E-value=0.11 Score=53.22 Aligned_cols=38 Identities=39% Similarity=0.514 Sum_probs=29.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
+.++++++|+.|+||||++.+++... ..+ -..+.++++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l-~~~--g~~V~lIta 242 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL-LKQ--NRTVGFITT 242 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH-HHc--CCeEEEEeC
Confidence 46899999999999999999999876 222 234556655
No 443
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.49 E-value=0.06 Score=53.33 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=26.2
Q ss_pred HHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 18 LLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 18 ~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+++..++.. ...+.+.|++|+|||++|+.++...
T Consensus 10 l~~~~l~~l~~----g~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 10 VTSRALRYLKS----GYPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred HHHHHHHHHhc----CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 33444444433 3566799999999999999998754
No 444
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.49 E-value=0.059 Score=55.02 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=38.0
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+||.++.+..+.-.+.+ .+..-|.|.|++|+||||+++.+..-+
T Consensus 4 ~~ivgq~~~~~al~~~~~~--~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVID--PKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcC--CCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999998887666655 445668899999999999999998766
No 445
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.48 E-value=0.037 Score=51.89 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=22.8
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..++.|.|.+|+||||+|+.++.+.
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999875
No 446
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.48 E-value=0.16 Score=51.80 Aligned_cols=42 Identities=21% Similarity=0.242 Sum_probs=31.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhcccc----CCCCEEEEEEEec
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQ----HNFDVVIWAAVIG 74 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~----~~f~~~~wv~~~~ 74 (693)
...++-|+|++|+|||++|.+++... ... ..-..++|++.-+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~-~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNV-QLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh-cCCcccCCCcceEEEEECCC
Confidence 46899999999999999999998775 211 0112789998744
No 447
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.47 E-value=0.21 Score=52.50 Aligned_cols=26 Identities=27% Similarity=0.604 Sum_probs=22.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+...++|.|..|+|||||++.+++..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~ 182 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNA 182 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 45788999999999999999888764
No 448
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.46 E-value=0.13 Score=49.79 Aligned_cols=39 Identities=18% Similarity=0.244 Sum_probs=28.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
....++.|.|++|+||||+|.+++.... .+-..+++++.
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~---~~g~~~~yi~~ 60 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFL---QNGYSVSYVST 60 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH---hCCCcEEEEeC
Confidence 3457999999999999999988777651 12244566654
No 449
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.44 E-value=0.064 Score=55.23 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=38.6
Q ss_pred CCcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 9 DHTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 9 ~~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...++|+++.+..+...+.. ...+.+.|++|+|||++|+.++...
T Consensus 23 ~~~~~g~~~~~~~~l~a~~~----~~~vll~G~PG~gKT~la~~lA~~l 67 (329)
T COG0714 23 EKVVVGDEEVIELALLALLA----GGHVLLEGPPGVGKTLLARALARAL 67 (329)
T ss_pred CCeeeccHHHHHHHHHHHHc----CCCEEEECCCCccHHHHHHHHHHHh
Confidence 34589998888888777766 4678999999999999999999987
No 450
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.42 E-value=0.027 Score=51.34 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 042597 36 IGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 36 v~i~G~~GiGKTtla~~~~~~~ 57 (693)
++|.|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999876
No 451
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.41 E-value=0.14 Score=53.89 Aligned_cols=39 Identities=33% Similarity=0.572 Sum_probs=30.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
+-+.++|.|.+|+|||+|+.++.+.. . +.+-+.++++-+
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~-~-~~~~~v~V~~~i 175 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNM-V-GQHQGVSIFCGI 175 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHH-H-hcCCCEEEEEEe
Confidence 45788999999999999999998875 2 223467777755
No 452
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.41 E-value=0.051 Score=55.65 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=38.4
Q ss_pred ccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 12 VVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 12 ~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+||+...+.++.+.+..-.....-|.|+|..|+||+++|+.+++.-
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 4788888888888887644556778999999999999999998764
No 453
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.40 E-value=0.049 Score=60.41 Aligned_cols=57 Identities=16% Similarity=0.299 Sum_probs=45.3
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
+.++|+++.++.+...+... +.+.++|++|+||||+|+.++... ...+++..+|..-
T Consensus 31 ~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l--~~~~~~~~~~~~n 87 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELL--PKEELQDILVYPN 87 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHc--ChHhHHHheEeeC
Confidence 66999999988888777552 479999999999999999999876 2334577778655
No 454
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.39 E-value=0.036 Score=52.78 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|+|++|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999999999999999999875
No 455
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.39 E-value=0.0035 Score=57.98 Aligned_cols=86 Identities=17% Similarity=0.157 Sum_probs=56.6
Q ss_pred cCCCCCccceeeccccccccccccccCCCCcccEEEccCCcchhhchHhhhccccccEEeeCCCCCCccChhhhcCCCCc
Q 042597 356 EIPTCSRLITLLLYENWIEEITDGFFQPMSSLRVLALGRNFFLSKLRSGIANLVSLHHLDLSSTNITGLPQDLKALEKLR 435 (693)
Q Consensus 356 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 435 (693)
++..+.+.++|+++.|.+...... |+.++.|..|+++.| .+..+|..++.+..+..+++..|..+..|.+.+..+.++
T Consensus 37 ei~~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcc
Confidence 345566666777766665555544 556666666777666 666667667666666666666666666776677777777
Q ss_pred EeccCCcc
Q 042597 436 YLNLDHAY 443 (693)
Q Consensus 436 ~L~l~~~~ 443 (693)
+++..++.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 77666664
No 456
>PRK14527 adenylate kinase; Provisional
Probab=94.35 E-value=0.04 Score=51.69 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...++.|.|++|+||||+|+.++..+
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998876
No 457
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.34 E-value=0.064 Score=47.99 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 16 ELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 16 ~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+.++++.+++. + +++++.|..|+|||||+..+....
T Consensus 23 ~~g~~~l~~~l~----~-k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 23 GEGIEELKELLK----G-KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTTHHHHHHHHT----T-SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CcCHHHHHHHhc----C-CEEEEECCCCCCHHHHHHHHHhhc
Confidence 345677777773 3 899999999999999999998764
No 458
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.34 E-value=0.077 Score=52.97 Aligned_cols=99 Identities=13% Similarity=0.122 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE-eccCCc----hhhhh-hchhHH
Q 042597 16 ELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV-IGFSDD----KKWKE-KSLQDK 89 (693)
Q Consensus 16 ~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~-~~~~~~----~~~~~-~~~~~~ 89 (693)
....+++.+.|...-.....+.|.|+.|+||||++..+.... ...-..++-+-- .+.... ..... ......
T Consensus 110 ~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i---~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~ 186 (270)
T PF00437_consen 110 GSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEI---PPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISY 186 (270)
T ss_dssp HHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHC---HTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSH
T ss_pred hhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhc---cccccceEEeccccceeecccceEEEEeecCcccH
Confidence 333445555555421246899999999999999999998876 222122222211 111100 00000 123445
Q ss_pred HHHHHHHHccCcEEEEEeCcccccchhh
Q 042597 90 AADISSILSRKKFVLLLDDIWERIDLKE 117 (693)
Q Consensus 90 ~~~l~~~l~~~~~LlvlDdv~~~~~~~~ 117 (693)
...++..|+...=.++++++-+.+....
T Consensus 187 ~~~l~~~LR~~pD~iiigEiR~~e~~~~ 214 (270)
T PF00437_consen 187 EDLLKSALRQDPDVIIIGEIRDPEAAEA 214 (270)
T ss_dssp HHHHHHHTTS--SEEEESCE-SCHHHHH
T ss_pred HHHHHHHhcCCCCcccccccCCHhHHHH
Confidence 5567777777777888888876654433
No 459
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.33 E-value=0.031 Score=29.01 Aligned_cols=17 Identities=29% Similarity=0.645 Sum_probs=10.3
Q ss_pred CCccEEEEccCCCCCCcC
Q 042597 631 PKLKKIQVLHCPELKKLP 648 (693)
Q Consensus 631 ~~L~~L~l~~c~~L~~lp 648 (693)
++|+.|++++|. |+.+|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 578888888886 77776
No 460
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.30 E-value=0.1 Score=48.64 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 042597 35 IIGLYGTGGVGKTTILTQVNN 55 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~ 55 (693)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999984
No 461
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.30 E-value=0.037 Score=49.84 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=20.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhhh
Q 042597 36 IGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 36 v~i~G~~GiGKTtla~~~~~~~ 57 (693)
|.|+|++|+||||+|+.++...
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998875
No 462
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.29 E-value=0.041 Score=51.14 Aligned_cols=26 Identities=19% Similarity=0.360 Sum_probs=23.2
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+..+++|+|++|+|||||++++..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998764
No 463
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.28 E-value=0.18 Score=57.66 Aligned_cols=171 Identities=17% Similarity=0.204 Sum_probs=83.3
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCC-C------CEEEEE-EE-eccCCchhhhhhc---hhHHHHHHHHHHc-
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHN-F------DVVIWA-AV-IGFSDDKKWKEKS---LQDKAADISSILS- 98 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~-f------~~~~wv-~~-~~~~~~~~~~~~~---~~~~~~~l~~~l~- 98 (693)
+..+++|+|+.|.||||+.+.+.-.....+.. | ....++ .+ ..... ....... ...-...+...+.
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~-~~si~~~LStfS~~m~~~~~il~~ 399 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGD-EQSIEQNLSTFSGHMKNISAILSK 399 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecCh-HhHHhhhhhHHHHHHHHHHHHHHh
Confidence 34799999999999999999987652111111 1 000000 00 11111 1111111 1111122333333
Q ss_pred -cCcEEEEEeCcccccchhh---h------------hhhhhcccchhhhhhcCCc-e---EEeccCCchHHHHHHHHHhh
Q 042597 99 -RKKFVLLLDDIWERIDLKE---L------------VSLFLTTRSVDVCDQMDAE-K---LEVYSLANDEAWKLFQEMVD 158 (693)
Q Consensus 99 -~~~~LlvlDdv~~~~~~~~---~------------~~iliTtr~~~~~~~~~~~-~---~~l~~l~~~e~~~l~~~~~~ 158 (693)
+.+-|+++|+....-+... + +.+|+||-...+....... . ..+ .++.+ ......+ ..
T Consensus 400 ~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~-~~d~~-~l~p~Yk-l~ 476 (771)
T TIGR01069 400 TTENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASV-LFDEE-TLSPTYK-LL 476 (771)
T ss_pred cCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEE-EEcCC-CCceEEE-EC
Confidence 4788999999875422111 1 4678888877653332111 1 122 12221 1100000 00
Q ss_pred cccCCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhcCCChhHHHHHHHHHhhhh
Q 042597 159 RSTLGSHTSIPELAETLARECSGLPLALKTVGRAMKSQTKVGDWQRAIKKMRISA 213 (693)
Q Consensus 159 ~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~l~~~~~~~~~~~~l~~l~~~~ 213 (693)
. + .+ -...+-.|++++ |+|-.+.--|..+.. ....+..+++..+....
T Consensus 477 ~-G---~~-g~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~L~~~~ 524 (771)
T TIGR01069 477 K-G---IP-GESYAFEIAQRY-GIPHFIIEQAKTFYG-EFKEEINVLIEKLSALE 524 (771)
T ss_pred C-C---CC-CCcHHHHHHHHh-CcCHHHHHHHHHHHH-hhHHHHHHHHHHHHHHH
Confidence 0 0 01 134677888776 788777777776655 34456677776666544
No 464
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=94.26 E-value=0.048 Score=52.86 Aligned_cols=32 Identities=25% Similarity=0.300 Sum_probs=22.1
Q ss_pred EEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 38 LYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 38 i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
|.||+|+||||+++.+.+.. ...-..++-|+.
T Consensus 1 ViGpaGSGKTT~~~~~~~~~---~~~~~~~~~vNL 32 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWL---ESNGRDVYIVNL 32 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHH---TTT-S-EEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHH---HhccCCceEEEc
Confidence 68999999999999999987 333334555555
No 465
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.25 E-value=0.19 Score=52.89 Aligned_cols=39 Identities=33% Similarity=0.579 Sum_probs=28.8
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
+-+.++|.|.+|+|||||+.+++... . +++-..++++-+
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~-~-~~~~~v~V~alI 180 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNI-A-KEHGGYSVFAGV 180 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHH-H-hcCCCeEEEEEe
Confidence 45788999999999999999998875 1 222345565544
No 466
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.24 E-value=0.19 Score=50.83 Aligned_cols=26 Identities=27% Similarity=0.588 Sum_probs=22.4
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....++|.|..|+|||||++.++...
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~ 93 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGT 93 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCC
Confidence 44688999999999999999888754
No 467
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.24 E-value=0.15 Score=46.93 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=23.6
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....|.|+|..|-||||.|..++.+.
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra 46 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA 46 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH
Confidence 45799999999999999999999887
No 468
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.23 E-value=0.03 Score=29.10 Aligned_cols=16 Identities=50% Similarity=0.814 Sum_probs=6.3
Q ss_pred cccEEeeCCCCCCccC
Q 042597 410 SLHHLDLSSTNITGLP 425 (693)
Q Consensus 410 ~L~~L~l~~~~i~~lp 425 (693)
+|+.|++++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555443
No 469
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.22 E-value=0.21 Score=52.60 Aligned_cols=81 Identities=19% Similarity=0.175 Sum_probs=53.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE-eccCCc----hhhhhhchhHHHHHHHHHHccCcEEEE
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV-IGFSDD----KKWKEKSLQDKAADISSILSRKKFVLL 105 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~-~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~Llv 105 (693)
....++.++||.|+||||....+.... ......++-+-- .+...+ ....+...-+....++.+|+..+=+|.
T Consensus 256 ~p~GliLvTGPTGSGKTTTLY~~L~~l---n~~~~nI~TiEDPVE~~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvIm 332 (500)
T COG2804 256 RPQGLILVTGPTGSGKTTTLYAALSEL---NTPERNIITIEDPVEYQLPGINQVQVNPKIGLTFARALRAILRQDPDVIM 332 (500)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHh---cCCCceEEEeeCCeeeecCCcceeecccccCCCHHHHHHHHhccCCCeEE
Confidence 457899999999999999999998876 444443333311 111110 011122334556779999999999999
Q ss_pred EeCcccccc
Q 042597 106 LDDIWERID 114 (693)
Q Consensus 106 lDdv~~~~~ 114 (693)
+.++-+.+.
T Consensus 333 VGEIRD~ET 341 (500)
T COG2804 333 VGEIRDLET 341 (500)
T ss_pred EeccCCHHH
Confidence 999877643
No 470
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.20 E-value=0.045 Score=46.72 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.|.|.|..|+|||||++.++...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999999876
No 471
>PLN02200 adenylate kinase family protein
Probab=94.20 E-value=0.047 Score=52.89 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=23.1
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|.|++|+||||+|+.++..+
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45688999999999999999998875
No 472
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.19 E-value=0.062 Score=57.92 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=24.8
Q ss_pred CCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 30 EKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 30 ~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.++..+|+|.|++|+||||||+.++...
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 3567899999999999999999998765
No 473
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.18 E-value=0.11 Score=58.46 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=47.7
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEEeccCCch-------------hhhhhchhHHHHHHHHHH
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAVIGFSDDK-------------KWKEKSLQDKAADISSIL 97 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~~~~~~~~-------------~~~~~~~~~~~~~l~~~l 97 (693)
...+++-|+|++|+||||||..++... ...-..++|++.-+..... .......++....+...+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a---~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv 134 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANA---QAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLI 134 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH---HHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHh
Confidence 456899999999999999999887765 2333557888772211100 111112233444444444
Q ss_pred cc-CcEEEEEeCccc
Q 042597 98 SR-KKFVLLLDDIWE 111 (693)
Q Consensus 98 ~~-~~~LlvlDdv~~ 111 (693)
+. +--++|+|.+..
T Consensus 135 ~~~~~~LVVIDSI~a 149 (790)
T PRK09519 135 RSGALDIVVIDSVAA 149 (790)
T ss_pred hcCCCeEEEEcchhh
Confidence 43 556899998753
No 474
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.17 E-value=0.037 Score=50.46 Aligned_cols=21 Identities=29% Similarity=0.438 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhh
Q 042597 36 IGLYGTGGVGKTTILTQVNNN 56 (693)
Q Consensus 36 v~i~G~~GiGKTtla~~~~~~ 56 (693)
|+|+|..|+|||||++.+..+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 799999999999999999875
No 475
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.14 E-value=0.052 Score=44.79 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHH
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVN 54 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~ 54 (693)
....++|.|+.|+|||||++.+.
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHHhh
Confidence 34789999999999999999876
No 476
>PRK06936 type III secretion system ATPase; Provisional
Probab=94.14 E-value=0.24 Score=52.04 Aligned_cols=36 Identities=25% Similarity=0.519 Sum_probs=27.9
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhhccccCCCCEEEEEEE
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFDVVIWAAV 72 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~~~~wv~~ 72 (693)
+...++|.|..|+|||||.+.+++.. ..+.++++-+
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~-----~~dv~V~~li 196 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSA-----EVDVTVLALI 196 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCC-----CCCEEEEEEE
Confidence 45789999999999999999998864 1245555544
No 477
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.13 E-value=0.05 Score=47.96 Aligned_cols=25 Identities=36% Similarity=0.628 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+|+|+|.+|+||||+.+.+....
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5799999999999999998776654
No 478
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=94.11 E-value=0.047 Score=50.56 Aligned_cols=48 Identities=25% Similarity=0.450 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhhccccCCC
Q 042597 15 QELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNFCHQQHNF 64 (693)
Q Consensus 15 r~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f 64 (693)
.++......+.|.. +.-..+++.|.||.||+|+|.++.++|......|
T Consensus 103 ~de~y~~~~e~L~~--n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f 150 (323)
T KOG2702|consen 103 DDEFYPVKYEALTS--NNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKF 150 (323)
T ss_pred hhhhhHHHHHHhcc--cchheeeeecCCCCcchhHHHHHHhhcchhhhhh
Confidence 34555566777765 6678999999999999999999999985444455
No 479
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.10 E-value=0.052 Score=49.11 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+++|.||+|+||||+++++..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4688999999999999999998863
No 480
>PRK13975 thymidylate kinase; Provisional
Probab=94.10 E-value=0.046 Score=51.54 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..|+|.|+.|+||||+|+.++...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999987
No 481
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.09 E-value=0.1 Score=52.81 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=30.1
Q ss_pred HHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 19 LYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 19 ~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+.+.+........+++|.|++|+||||++..+....
T Consensus 20 ~~~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 20 AKQLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred HHHHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 344455554334567999999999999999999998876
No 482
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.09 E-value=0.24 Score=56.93 Aligned_cols=171 Identities=15% Similarity=0.145 Sum_probs=85.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhcccc-------------CCCCEEEEEEEeccCCchhhhhhchhHHHHHHHHHH
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQQ-------------HNFDVVIWAAVIGFSDDKKWKEKSLQDKAADISSIL 97 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~~-------------~~f~~~~wv~~~~~~~~~~~~~~~~~~~~~~l~~~l 97 (693)
.+.+++.|+|+.+.||||+.+.+.-...-.+ ..|+.+ +..+..... ..............+...+
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i-~~~ig~~~s-i~~~lStfS~~m~~~~~Il 402 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEI-FADIGDEQS-IEQSLSTFSGHMTNIVRIL 402 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceE-EEecCCccc-hhhchhHHHHHHHHHHHHH
Confidence 3457899999999999999998865421000 112222 222211100 0011111111122233333
Q ss_pred c--cCcEEEEEeCcccccchh---hh------------hhhhhcccchhhhhhcCCce----EEeccCCchHHHHHHHHH
Q 042597 98 S--RKKFVLLLDDIWERIDLK---EL------------VSLFLTTRSVDVCDQMDAEK----LEVYSLANDEAWKLFQEM 156 (693)
Q Consensus 98 ~--~~~~LlvlDdv~~~~~~~---~~------------~~iliTtr~~~~~~~~~~~~----~~l~~l~~~e~~~l~~~~ 156 (693)
. +.+-|+++|+....-+.. .+ ..+|+||-...+........ ..+. ++.+ ......+
T Consensus 403 ~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~~-~l~~~Yk- 479 (782)
T PRK00409 403 EKADKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGVENASVE-FDEE-TLRPTYR- 479 (782)
T ss_pred HhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCeEEEEEE-EecC-cCcEEEE-
Confidence 2 477799999987443221 11 56788888876655432221 1111 1211 1110000
Q ss_pred hhcccCCCCCChHHHHHHHHHHhCCcchHHHHHHHHHhcCCChhHHHHHHHHHhhhh
Q 042597 157 VDRSTLGSHTSIPELAETLARECSGLPLALKTVGRAMKSQTKVGDWQRAIKKMRISA 213 (693)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~I~~~~~G~Plal~~~~~~l~~~~~~~~~~~~l~~l~~~~ 213 (693)
.. .+ .+ -...+-.|++.+ |+|-.+..-|..+.. .+..+..+++..+....
T Consensus 480 l~-~G-~~---g~S~a~~iA~~~-Glp~~ii~~A~~~~~-~~~~~~~~li~~l~~~~ 529 (782)
T PRK00409 480 LL-IG-IP---GKSNAFEIAKRL-GLPENIIEEAKKLIG-EDKEKLNELIASLEELE 529 (782)
T ss_pred Ee-eC-CC---CCcHHHHHHHHh-CcCHHHHHHHHHHHh-hhhhHHHHHHHHHHHHH
Confidence 00 01 01 145577788776 788887777776655 34456777777666544
No 483
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.07 E-value=0.085 Score=58.68 Aligned_cols=44 Identities=25% Similarity=0.374 Sum_probs=36.8
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+.++|+++..+.+...+... +.+.++|++|+||||+|+.+++..
T Consensus 18 ~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l 61 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELL 61 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHc
Confidence 66899999888777777552 366699999999999999999887
No 484
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.06 E-value=0.042 Score=51.30 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+++|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997764
No 485
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.06 E-value=0.13 Score=55.01 Aligned_cols=26 Identities=35% Similarity=0.638 Sum_probs=23.5
Q ss_pred CeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 32 NRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...+++|+|++|+||||++.+++...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999999999999876
No 486
>PRK13948 shikimate kinase; Provisional
Probab=94.05 E-value=0.05 Score=50.22 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=24.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.....|+++|+.|+||||+++.++.+.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~l 34 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRAL 34 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 345889999999999999999999876
No 487
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.03 E-value=0.073 Score=54.35 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=38.0
Q ss_pred CcccchHHHHHHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 10 HTVVGQELLLYRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 10 ~~~vGr~~~~~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
..+||.++....+...... .+..-|.|.|+.|+||||+|+.+++-.
T Consensus 17 ~~ivGq~~~k~al~~~~~~--p~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 17 TAIVGQEEMKLALILNVID--PKIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred HHHhChHHHHHHHHHhccC--CCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 5689999887777776655 566667799999999999999998766
No 488
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.02 E-value=0.12 Score=48.62 Aligned_cols=36 Identities=31% Similarity=0.451 Sum_probs=27.7
Q ss_pred HHHHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 20 YRVWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 20 ~~l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+.+..+.. .+.+++.|.|++|.||||+++.+...+
T Consensus 7 ~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~~~ 42 (196)
T PF13604_consen 7 REAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAEAL 42 (196)
T ss_dssp HHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHHHH
Confidence 344444444 345789999999999999999998877
No 489
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.02 E-value=0.17 Score=51.79 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=31.5
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhhccc---c-CCCCEEEEEEEecc
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNFCHQ---Q-HNFDVVIWAAVIGF 75 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~~~~---~-~~f~~~~wv~~~~~ 75 (693)
....++-|+|++|+|||+||..++-.. .. . ..-..++|++.-+.
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~-~~~~~~gg~~g~vlyIdtE~~ 168 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTC-QLPLDQGGGEGKAMYIDTEGT 168 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHh-hcchhhCCCCceEEEEECCCC
Confidence 346889999999999999999888643 11 1 11136889988443
No 490
>PLN02165 adenylate isopentenyltransferase
Probab=94.01 E-value=0.041 Score=55.34 Aligned_cols=27 Identities=19% Similarity=0.490 Sum_probs=24.1
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....+++|+|+.|+||||||..++...
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 445699999999999999999999886
No 491
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.00 E-value=0.048 Score=50.09 Aligned_cols=25 Identities=40% Similarity=0.494 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
...|+|.|+.|+||||+|+.++...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3569999999999999999999875
No 492
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.99 E-value=0.25 Score=48.36 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=19.4
Q ss_pred CeeEEEEEcCCCCcHHHHH-HHHHh
Q 042597 32 NRRIIGLYGTGGVGKTTIL-TQVNN 55 (693)
Q Consensus 32 ~~~vv~i~G~~GiGKTtla-~~~~~ 55 (693)
+-+.++|.|.+|+|||+|| ..+.+
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~ 92 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIIN 92 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHH
Confidence 4578899999999999996 44544
No 493
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=93.98 E-value=0.082 Score=44.95 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=24.0
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
....+|.+.|.=|+|||||++.+++.+
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 346899999999999999999999987
No 494
>PRK04182 cytidylate kinase; Provisional
Probab=93.97 E-value=0.048 Score=50.58 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+|+|.|+.|+||||+|+.++.++
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999876
No 495
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.97 E-value=0.19 Score=52.09 Aligned_cols=82 Identities=15% Similarity=0.167 Sum_probs=46.7
Q ss_pred eeEEEEEcCCCCcHHHHHHHHHhhhccccCCCC-EEEEEEE-eccC--Cc-------hhhhhhchhHHHHHHHHHHccCc
Q 042597 33 RRIIGLYGTGGVGKTTILTQVNNNFCHQQHNFD-VVIWAAV-IGFS--DD-------KKWKEKSLQDKAADISSILSRKK 101 (693)
Q Consensus 33 ~~vv~i~G~~GiGKTtla~~~~~~~~~~~~~f~-~~~wv~~-~~~~--~~-------~~~~~~~~~~~~~~l~~~l~~~~ 101 (693)
...+.|+|+.|+||||+++.+.+.... ...+ .++.+.- .+.. .. ......+.......++..++..+
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~--~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~P 226 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGE--TYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAP 226 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh--cCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCC
Confidence 357889999999999999999876511 1112 1222211 1100 00 00001112234556777777788
Q ss_pred EEEEEeCcccccchh
Q 042597 102 FVLLLDDIWERIDLK 116 (693)
Q Consensus 102 ~LlvlDdv~~~~~~~ 116 (693)
=.|+++++-+.+..+
T Consensus 227 D~I~vGEiRd~et~~ 241 (372)
T TIGR02525 227 KIIGVGEIRDLETFQ 241 (372)
T ss_pred CEEeeCCCCCHHHHH
Confidence 888888887765554
No 496
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.96 E-value=0.065 Score=39.12 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+..|+|+.|+||||+..++..-+
T Consensus 24 ~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 24 DVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 379999999999999998876644
No 497
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=93.94 E-value=0.05 Score=49.99 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 042597 35 IIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 35 vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+|+|.|+.|+||||+|+.+....
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998865
No 498
>PRK06761 hypothetical protein; Provisional
Probab=93.93 E-value=0.07 Score=52.69 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 34 RIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 34 ~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+++.|.|++|+||||+++.++...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999999987
No 499
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.93 E-value=0.24 Score=52.04 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=22.9
Q ss_pred CCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 31 KNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 31 ~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
.+...++|.|..|+|||||++.++...
T Consensus 153 ~~GqrigI~G~sG~GKSTLL~~I~~~~ 179 (433)
T PRK07594 153 GEGQRVGIFSAPGVGKSTLLAMLCNAP 179 (433)
T ss_pred CCCCEEEEECCCCCCccHHHHHhcCCC
Confidence 345789999999999999998887754
No 500
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=93.91 E-value=0.13 Score=49.59 Aligned_cols=49 Identities=24% Similarity=0.304 Sum_probs=37.3
Q ss_pred CCcccchHHHHHH---HHHHhhhcCCCeeEEEEEcCCCCcHHHHHHHHHhhh
Q 042597 9 DHTVVGQELLLYR---VWRCITDQEKNRRIIGLYGTGGVGKTTILTQVNNNF 57 (693)
Q Consensus 9 ~~~~vGr~~~~~~---l~~~l~~~~~~~~vv~i~G~~GiGKTtla~~~~~~~ 57 (693)
+..|||.+...+. +.+.+....=..+.|.+.|++|.|||+||..+...+
T Consensus 37 ~~g~vGQ~~AReAagiivdlik~KkmaGravLlaGppgtGKTAlAlaisqEL 88 (456)
T KOG1942|consen 37 AAGFVGQENAREAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTALALAISQEL 88 (456)
T ss_pred ccccccchhhhhhhhHHHHHHHhhhccCcEEEEecCCCCchhHHHHHHHHHh
Confidence 4689998765432 555555422245889999999999999999999987
Done!